diff --git a/.gitattributes b/.gitattributes index a6344aac8c09253b3b630fb776ae94478aa0275b..6e1867bc6ba682074eeb94336d38eacd57e32572 100644 --- a/.gitattributes +++ b/.gitattributes @@ -33,3 +33,10 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text *.zip filter=lfs diff=lfs merge=lfs -text *.zst filter=lfs diff=lfs merge=lfs -text *tfevents* filter=lfs diff=lfs merge=lfs -text +extract/manifest/ec_classification.csv filter=lfs diff=lfs merge=lfs -text +extract/manifest/go_bp.csv filter=lfs diff=lfs merge=lfs -text +extract/manifest/stability.csv filter=lfs diff=lfs merge=lfs -text +extract/manifest/go_mf.csv filter=lfs diff=lfs merge=lfs -text +extract/manifest/fluorescence.csv filter=lfs diff=lfs merge=lfs -text +extract/manifest/membrane_soluble.csv filter=lfs diff=lfs merge=lfs -text +extract/manifest/subcellular_localization.csv filter=lfs diff=lfs merge=lfs -text diff --git a/confirmation/labels_v44.h5 b/confirmation/labels_v44.h5 new file mode 100644 index 0000000000000000000000000000000000000000..d366272133b479d350d2dac8227531aaaee4941d --- /dev/null +++ b/confirmation/labels_v44.h5 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cbde04bb4ea1d1b57f01dc3b2144043fabaab51e2b429ec96ed458c2ef37c697 +size 38430021 diff --git a/confirmation2/labels_v44.h5 b/confirmation2/labels_v44.h5 new file mode 100644 index 0000000000000000000000000000000000000000..c22ac9b30a10acbe7ede64e119d2458974a1ab17 --- /dev/null +++ b/confirmation2/labels_v44.h5 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f2a210a24fe78eb8d4849689dbe5ae61ed2f996558858cb0ddbf3c2c5c655ce +size 25800382 diff --git a/extract/ab_modality/embeddings/solubility/esm3_seqonly/test.npy b/extract/ab_modality/embeddings/solubility/esm3_seqonly/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..58eb4bb990f93a70c89a7e1a9958db0af8fcd20f --- /dev/null +++ b/extract/ab_modality/embeddings/solubility/esm3_seqonly/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:708f7be215febba01cb9084189150de069f318e9814c1f314bd117d0d6d8536e +size 8165504 diff --git a/extract/ab_modality/probing_embeddings/lengths.npy b/extract/ab_modality/probing_embeddings/lengths.npy new file mode 100644 index 0000000000000000000000000000000000000000..21a6151992f86dfca5627e373814cf61c58862ad --- /dev/null +++ b/extract/ab_modality/probing_embeddings/lengths.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:45a7cd188c5f5f86bd0521bc0f16818513dfb1861bb1ea2dc3506255fdf49821 +size 155816 diff --git a/extract/ab_modality/probing_embeddings/offsets.npy b/extract/ab_modality/probing_embeddings/offsets.npy new file mode 100644 index 0000000000000000000000000000000000000000..89f672df58a785ed91e2cb36ad50c24e32e6527c --- /dev/null +++ b/extract/ab_modality/probing_embeddings/offsets.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb1e007cad98eb70bc3ba9611dc0a814ec3d7f1d680251d4302b7fc7105bce88 +size 155816 diff --git a/extract/embeddings/ec_classification/ankh_base/test.npy b/extract/embeddings/ec_classification/ankh_base/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f2ad49a4f7a20c5c2a167de21b92924e96d1c1fb --- /dev/null +++ b/extract/embeddings/ec_classification/ankh_base/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3c617b551906f4e2822098bd3205887e0ac0b2726f9a1230648f50ac772da2e5 +size 9216128 diff --git a/extract/embeddings/ec_classification/ankh_base/train.npy b/extract/embeddings/ec_classification/ankh_base/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..6a3adfe48830a8bf77b568d5c595c5982e57aad3 --- /dev/null +++ b/extract/embeddings/ec_classification/ankh_base/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:879db272f866e9e1be2d9ac8564622b2579ca953670bf6dbe3a59c2055c7046f +size 18432128 diff --git a/extract/embeddings/ec_classification/cdconv/test.npy b/extract/embeddings/ec_classification/cdconv/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..8086d2dfd2b758d534fe83d10e96a313bcfef4fa --- /dev/null +++ b/extract/embeddings/ec_classification/cdconv/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c341db5eadc0167f537a14696f292aaeb4cccc3e50676892bb6e0fe9e337268a +size 3072128 diff --git a/extract/embeddings/ec_classification/cdconv/train.npy b/extract/embeddings/ec_classification/cdconv/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..1ba96aed62f5aaf870fdb12d917077081daf29dc --- /dev/null +++ b/extract/embeddings/ec_classification/cdconv/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:123eaf81b2106a58cb0280891558ba91701f306f07a1ee88319468c331f6d61b +size 6144128 diff --git a/extract/embeddings/ec_classification/cdconv/valid.npy b/extract/embeddings/ec_classification/cdconv/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7ef6cfb9d0674b370a18a8d8b6c863e8c1a128fd --- /dev/null +++ b/extract/embeddings/ec_classification/cdconv/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:747100c739fcfd4e55f0ed6341e4e42e6b9c1b83fff9518657ff5ad81974b373 +size 1536128 diff --git a/extract/embeddings/ec_classification/dimenet/test.npy b/extract/embeddings/ec_classification/dimenet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f3caf4c3f07ba50f147d62dcdac9a405d780503d --- /dev/null +++ b/extract/embeddings/ec_classification/dimenet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:47ddd90aefcf8b735ce030fc8ceccaa946ac5d604745376fd9bdf170f7e95715 +size 1536128 diff --git a/extract/embeddings/ec_classification/dimenet/train.npy b/extract/embeddings/ec_classification/dimenet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad83808eac6a487cd2d5d2de3241571404ed55d3 --- /dev/null +++ b/extract/embeddings/ec_classification/dimenet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5abb288af28839488b5cc5afb0acc7c2ef6d764ee97c98d60626cea34fe45e87 +size 3072128 diff --git a/extract/embeddings/ec_classification/dimenet/valid.npy b/extract/embeddings/ec_classification/dimenet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1144893f6cd7f22d9a6256fce6019966a70a449 --- /dev/null +++ b/extract/embeddings/ec_classification/dimenet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea942650921cadcfd83cce6ff15162f5c7b4f07cf0904d16824364cdc9476cb9 +size 768128 diff --git a/extract/embeddings/ec_classification/esm1b/test.npy b/extract/embeddings/ec_classification/esm1b/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..9625b8913ecca55830366637cc0cb1080337af09 --- /dev/null +++ b/extract/embeddings/ec_classification/esm1b/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6faafd06d6c291e3dd748806f35a77aabe8d64df421983a1f79f9ccbb7fb61bb +size 15360128 diff --git a/extract/embeddings/ec_classification/esm1b/train.npy b/extract/embeddings/ec_classification/esm1b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..59252719308488ad5d8d6c9237860a1542762e41 --- /dev/null +++ b/extract/embeddings/ec_classification/esm1b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:daa9e43cdb747933f2c888ba8a5c13f6eacaf66352f9684dd8590a35b1b23e3a +size 30720128 diff --git a/extract/embeddings/ec_classification/esm1b/valid.npy b/extract/embeddings/ec_classification/esm1b/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5491559b0a52b4f4396edd0b4f2e71530deb8693 --- /dev/null +++ b/extract/embeddings/ec_classification/esm1b/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0c62662ce6c9b33dac6c91778d8b488fdc2464de73792119f7dbd90f4a581943 +size 7680128 diff --git a/extract/embeddings/ec_classification/esm2_150m/test.npy b/extract/embeddings/ec_classification/esm2_150m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..fba71fe7eba1bf8b45c8a9069294f5be672aefc0 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_150m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0d4e56e6e80b242c7acbece4a254015f4d42977437de01a37767a9a2651cc77e +size 7680128 diff --git a/extract/embeddings/ec_classification/esm2_150m/train.npy b/extract/embeddings/ec_classification/esm2_150m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..192777a83e079a72823644bc6b6cadfdfc5cf1ce --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_150m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c3e25988bf410a2ea6aeb99510090a9c6d75cfd449240c1d6e76ec91ee9d4a16 +size 15360128 diff --git a/extract/embeddings/ec_classification/esm2_150m/valid.npy b/extract/embeddings/ec_classification/esm2_150m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..9a2841039228fea82f0e397315eb5c0160bb7b4f --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_150m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfd2d24447b257aba587ad6bd561163d8ac05eab85c7dd53c3baa928b1f81220 +size 3840128 diff --git a/extract/embeddings/ec_classification/esm2_35m/test.npy b/extract/embeddings/ec_classification/esm2_35m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..fac2fcf1d9379188debb4f9e6e22e3c740ff4388 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_35m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d703899a8ed860c5523a32bf777a1a0d0a963fad29cf63f606dafc76b710451c +size 5760128 diff --git a/extract/embeddings/ec_classification/esm2_35m/train.npy b/extract/embeddings/ec_classification/esm2_35m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..b6691c44d9695585f84fc803ab7aaed9628bc13a --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_35m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:68ec35078c4d7ccaccce39a68d35a83a9ae458df3a8c5d3f7865cc1996f78d1a +size 11520128 diff --git a/extract/embeddings/ec_classification/esm2_35m/valid.npy b/extract/embeddings/ec_classification/esm2_35m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..74dce5dc452d8ba528e46d72b95fd64448039c4d --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_35m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ec42c3b0720e5dba6adac3230420a7c4d6a89b49f8dcea10fb6ef12f4f8ced23 +size 2880128 diff --git a/extract/embeddings/ec_classification/esm2_3b/test.npy b/extract/embeddings/ec_classification/esm2_3b/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..96779c83fd88e4f4b99dc1c397a7980fece93891 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_3b/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:13af707f2fad7397fad8a88f97ef233747efeeed47e9d91a132519055b84bc3e +size 30720128 diff --git a/extract/embeddings/ec_classification/esm2_3b/train.npy b/extract/embeddings/ec_classification/esm2_3b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ae2a27d90f2fd9e82c190aedb4578bc2bb240ed4 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_3b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c632548adb36e318669b35a455d5faeeb36ed2602d8706b8217f0b2a5b5f6365 +size 61440128 diff --git a/extract/embeddings/ec_classification/esm2_3b/valid.npy b/extract/embeddings/ec_classification/esm2_3b/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e99cb664739a030304a4a928b832c6e2cff83010 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_3b/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6cc4ead3d33aa88f6fd428a239464d023d32442dbe7e6c8454a1be8149c47aab +size 15360128 diff --git a/extract/embeddings/ec_classification/esm2_650m/test.npy b/extract/embeddings/ec_classification/esm2_650m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..4726ab6cab3db382e6be99ccceaf196f16b5e938 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_650m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e0fd3af788957ba2cb25e04207d8f8bd443cfe0f821c7b0b92bc253e69616c7d +size 15360128 diff --git a/extract/embeddings/ec_classification/esm2_650m/train.npy b/extract/embeddings/ec_classification/esm2_650m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..70f45bbd3c7fe70b9c8f70a406c65ebf0efbeb5f --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_650m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6291090f62d27d62e820705cbb48ab1b7eec1a4804c1e20ad719ca033b681f1f +size 30720128 diff --git a/extract/embeddings/ec_classification/esm2_650m/valid.npy b/extract/embeddings/ec_classification/esm2_650m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1da96655b3c698483c05508d4382e2969e20a5c --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_650m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ffeb7133f671c596ddef9fa0a95ca428a00de11f8352e9961b5eba133066e41 +size 7680128 diff --git a/extract/embeddings/ec_classification/esm2_8m/test.npy b/extract/embeddings/ec_classification/esm2_8m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..e1fd1d8b0c9c32390500c45fe03ac1c6e0f833b9 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_8m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be4a004be2d953453449f01e906cce60cd2c6b5001438b027a59426a177c39e2 +size 3840128 diff --git a/extract/embeddings/ec_classification/esm2_8m/train.npy b/extract/embeddings/ec_classification/esm2_8m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..54d1b191590ad7c5f4834a42390e7b41d99b59b1 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_8m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3a23029ef10232095f789541ca75ca413d0e124614b26fce6b84572493638e6f +size 7680128 diff --git a/extract/embeddings/ec_classification/esm2_8m/valid.npy b/extract/embeddings/ec_classification/esm2_8m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..65839f1c809bc912307c86710282b17a83950891 --- /dev/null +++ b/extract/embeddings/ec_classification/esm2_8m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fa8c6c5f8becd1a6b306066b928aad5f7710d297159a49a49e236b11dbe50603 +size 1920128 diff --git a/extract/embeddings/ec_classification/esm3/test.npy b/extract/embeddings/ec_classification/esm3/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..1d8084e7390a57086889dea11b518b4f63b6a802 --- /dev/null +++ b/extract/embeddings/ec_classification/esm3/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56de80951c126d3ef70338c838e8407e121c743a5038ec88d43f38356d4492b8 +size 18432128 diff --git a/extract/embeddings/ec_classification/esm3/train.npy b/extract/embeddings/ec_classification/esm3/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..40a9e4faeee22cc0bbe37d124b115cd0cfb61164 --- /dev/null +++ b/extract/embeddings/ec_classification/esm3/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0b0d99fec05ac05a3b049278afca2b56fdee348490ca009c3852ebeddd6847bf +size 36864128 diff --git a/extract/embeddings/ec_classification/esm3/valid.npy b/extract/embeddings/ec_classification/esm3/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e2593e4ff648ba6f244f13453499b76f3dae274e --- /dev/null +++ b/extract/embeddings/ec_classification/esm3/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:416c89f11c05c31aacf04c3cc4e2f42e74a05da55fabbd490c7499e95b3a2560 +size 9216128 diff --git a/extract/embeddings/ec_classification/esm_if1/test.npy b/extract/embeddings/ec_classification/esm_if1/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..164316dc0d7bb4f8ed69de86ef404a40d2051e14 --- /dev/null +++ b/extract/embeddings/ec_classification/esm_if1/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:841dcd6735b84fa79ebb59cd1ba525a5045de55143c7ed6e0dfbdd48dfaa69b2 +size 6144128 diff --git a/extract/embeddings/ec_classification/esm_if1/train.npy b/extract/embeddings/ec_classification/esm_if1/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..47581d2009ffc327c3039cda1761846a8400450e --- /dev/null +++ b/extract/embeddings/ec_classification/esm_if1/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b24e6d13f2eb8193a60b83901cb8e8be87c06bb7b1608531c900fd506898397b +size 12288128 diff --git a/extract/embeddings/ec_classification/esm_if1/valid.npy b/extract/embeddings/ec_classification/esm_if1/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..8ae408f1ffa07088dea0debe35d813beb47a07e0 --- /dev/null +++ b/extract/embeddings/ec_classification/esm_if1/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a26830c12a42267c6a5c5283f7233755a4ccb42471c7b1de2fd3fb0afee36eae +size 3072128 diff --git a/extract/embeddings/ec_classification/foldseek_3di/test.npy b/extract/embeddings/ec_classification/foldseek_3di/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f565b910a1cb290775256b0021febe1c7d82ccc0 --- /dev/null +++ b/extract/embeddings/ec_classification/foldseek_3di/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ec005a137a0ba10ae631a3bafcc25ca49831e0ccba2163eb44ddc12a706ba2d5 +size 240128 diff --git a/extract/embeddings/ec_classification/foldseek_3di/train.npy b/extract/embeddings/ec_classification/foldseek_3di/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f8680f81f5c9aaeb67c124d5d7a4be473bf4811f --- /dev/null +++ b/extract/embeddings/ec_classification/foldseek_3di/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dcf57692b9827a94cf9f9bfbb24022097bd5303616b412f177d3628665d5dfae +size 480128 diff --git a/extract/embeddings/ec_classification/foldseek_3di/valid.npy b/extract/embeddings/ec_classification/foldseek_3di/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..32695121538ee0f588f4e57e500c630e2eaaba2a --- /dev/null +++ b/extract/embeddings/ec_classification/foldseek_3di/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3ce2b6691a7e232983783e03df31caf1cd6a81696de0fbb79476a8117004888 +size 120128 diff --git a/extract/embeddings/ec_classification/foldvision/test.npy b/extract/embeddings/ec_classification/foldvision/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..68edfaa5a1021a583eefb92fd489e2ca187b1624 --- /dev/null +++ b/extract/embeddings/ec_classification/foldvision/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:18b8fe9b084f90fce5873b6d2589d2319f2c22a57d3e48916fca8894f995031b +size 12288128 diff --git a/extract/embeddings/ec_classification/foldvision/train.npy b/extract/embeddings/ec_classification/foldvision/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..a34103bf749d12eb043be84cdad5ece3f17a84be --- /dev/null +++ b/extract/embeddings/ec_classification/foldvision/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1fbc8b4fdefca4aac1da3fd2b4b18cc40c7966d861d6ef1a79b66de7df9f40ac +size 24576128 diff --git a/extract/embeddings/ec_classification/foldvision/valid.npy b/extract/embeddings/ec_classification/foldvision/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad987440c044cf4a0f3326359386d55590591791 --- /dev/null +++ b/extract/embeddings/ec_classification/foldvision/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c55e22df1f5dddf45a14dc9335a11a06bb256ca321d193aa557fc788ac011367 +size 6144128 diff --git a/extract/embeddings/ec_classification/gcpnet_pretrained/test.npy b/extract/embeddings/ec_classification/gcpnet_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..568fbe6578404f45b07633b4ccb51280eb0423f5 --- /dev/null +++ b/extract/embeddings/ec_classification/gcpnet_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a218d6135fbfc31475d83a828a2bf977738dcbdb860642af93dd7a777cfd721 +size 1392128 diff --git a/extract/embeddings/ec_classification/gcpnet_pretrained/train.npy b/extract/embeddings/ec_classification/gcpnet_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..80633e658eb33a5c39c77b68a769e5b7b86f8d1c --- /dev/null +++ b/extract/embeddings/ec_classification/gcpnet_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7afeeeb0f5ba0c410e81d56d44e724a98cf703fc6a949db742e089a6e1e1fa51 +size 2784128 diff --git a/extract/embeddings/ec_classification/gcpnet_pretrained/valid.npy b/extract/embeddings/ec_classification/gcpnet_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..17d82afea4f6ec05b660750c3d68a66d1b0669fc --- /dev/null +++ b/extract/embeddings/ec_classification/gcpnet_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7c819e8bc92fe847300169a0c95ee20baa1fb7e166ce5302ab4687fc65374582 +size 696128 diff --git a/extract/embeddings/ec_classification/gcpnet_random/test.npy b/extract/embeddings/ec_classification/gcpnet_random/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f345789839d332118eb25fee551f97bcc6baa896 --- /dev/null +++ b/extract/embeddings/ec_classification/gcpnet_random/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2296190788fe2d90d663c7bfb15a99690946a03750a5d59bd2b6808c9a9d7b43 +size 1392128 diff --git a/extract/embeddings/ec_classification/gcpnet_random/train.npy b/extract/embeddings/ec_classification/gcpnet_random/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ec3ffbddb2a2b9710de9dcd47ea3c2b88623f25 --- /dev/null +++ b/extract/embeddings/ec_classification/gcpnet_random/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a5aa287e0ee6c1f4a62741af082163187c949c2d009461d2fb13e8a10d9c351 +size 2784128 diff --git a/extract/embeddings/ec_classification/gcpnet_random/valid.npy b/extract/embeddings/ec_classification/gcpnet_random/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..3e1b91b12a9d3a1a5dec4d5fa9ac7546d8219603 --- /dev/null +++ b/extract/embeddings/ec_classification/gcpnet_random/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:71f20da06bb8accbd12963740d2254cb226836cf3061890e9bd5c1de2d098dc1 +size 696128 diff --git a/extract/embeddings/ec_classification/gearnet/test.npy b/extract/embeddings/ec_classification/gearnet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ca2e2ac25b0e597d546b912b6c0a7cab96278d8 --- /dev/null +++ b/extract/embeddings/ec_classification/gearnet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6bc1c3b69e9c899574fbcc4cb0a2672f59ba162915c5b6df08f5b9ac0b4769a0 +size 6144128 diff --git a/extract/embeddings/ec_classification/gearnet/train.npy b/extract/embeddings/ec_classification/gearnet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..d9d990649d71d81f35a8df062ab290f674200bf3 --- /dev/null +++ b/extract/embeddings/ec_classification/gearnet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:73ded6adedfd6f4480789bec990d437db335450fd8bac0d1a0a78b62cb2f817f +size 12288128 diff --git a/extract/embeddings/ec_classification/gearnet/valid.npy b/extract/embeddings/ec_classification/gearnet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..2c62d3e8f90d412a15efc458d01b395800ab8460 --- /dev/null +++ b/extract/embeddings/ec_classification/gearnet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:875340379021d9eafd08687122a65543b8cea0a58a5b709a35c556313f25d2a6 +size 3072128 diff --git a/extract/embeddings/ec_classification/gearnet_pretrained/test.npy b/extract/embeddings/ec_classification/gearnet_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..64119449c3fb0d026ad4ef6084ca673daca3952e --- /dev/null +++ b/extract/embeddings/ec_classification/gearnet_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b7e202429826459b5d76447f8f7bd82252081d8b4c631797262d59a9d9cf9112 +size 6144128 diff --git a/extract/embeddings/ec_classification/gearnet_pretrained/train.npy b/extract/embeddings/ec_classification/gearnet_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..29285a5da2a21f97d01a3651a74c7cf4695e6c99 --- /dev/null +++ b/extract/embeddings/ec_classification/gearnet_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e5baefd45a44a4f33ad70654312a384c2c6aaca96abcd99ee3e9d20c0743d4de +size 12288128 diff --git a/extract/embeddings/ec_classification/gearnet_pretrained/valid.npy b/extract/embeddings/ec_classification/gearnet_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..c818d7a3d30c1a9957b6e855c40490a3e0613e42 --- /dev/null +++ b/extract/embeddings/ec_classification/gearnet_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:54e6f6de694eac0324b37bd760b4eb92b2fef9d209dc740d417f9020a43adbe1 +size 3072128 diff --git a/extract/embeddings/ec_classification/gvp/test.npy b/extract/embeddings/ec_classification/gvp/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..50d870bbe7bb057fbf2f522db87a9a25e2e09286 --- /dev/null +++ b/extract/embeddings/ec_classification/gvp/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5e9f455252a4f1b7114054e6ceec6a91fcf64b69f327e7e49ae36e0d164f210a +size 1392128 diff --git a/extract/embeddings/ec_classification/gvp/train.npy b/extract/embeddings/ec_classification/gvp/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..7fd38a5da363cb64e262b9770251f69b7e443708 --- /dev/null +++ b/extract/embeddings/ec_classification/gvp/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0a39a55837b02434557dcbe9e106157149badfc895ea7289d152d9b620ccb2b +size 2784128 diff --git a/extract/embeddings/ec_classification/gvp/valid.npy b/extract/embeddings/ec_classification/gvp/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..89ce9d1d5a36587cc810cd952e97e20e76f2cb06 --- /dev/null +++ b/extract/embeddings/ec_classification/gvp/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b633c4786942be388dd4081659dc20eb6360290a1a9daefb2fa3e9594b925ded +size 696128 diff --git a/extract/embeddings/ec_classification/ipa/test.npy b/extract/embeddings/ec_classification/ipa/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..d75b3e8c037bb6d14b41335e32a267df14f0ee4a --- /dev/null +++ b/extract/embeddings/ec_classification/ipa/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9b58a223e312c5e42a6c2a0c8fad068bae31e5edab6e92e72f7e75a31044e7b +size 1536128 diff --git a/extract/embeddings/ec_classification/ipa/train.npy b/extract/embeddings/ec_classification/ipa/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ac25ffe7222471d9f8a3c9d73c4aab4ebe55aa6c --- /dev/null +++ b/extract/embeddings/ec_classification/ipa/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:682d483857f6a8afddb0da8836da8e293e05fdd06071ff090cbf48facfeea9c5 +size 3072128 diff --git a/extract/embeddings/ec_classification/ipa/valid.npy b/extract/embeddings/ec_classification/ipa/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..d5ad1aa47137e5b3c8fb7e8c51a0f5d1b5a6f14b --- /dev/null +++ b/extract/embeddings/ec_classification/ipa/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f344e37f4d37b58eaf88cde0654ae49753a3d5ab725bd9e63aac6efb19addbb +size 768128 diff --git a/extract/embeddings/ec_classification/ipa_pretrained/test.npy b/extract/embeddings/ec_classification/ipa_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..6ae8d93213ceab8ca18e97e85ec7b44babec7a93 --- /dev/null +++ b/extract/embeddings/ec_classification/ipa_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:71052149431c2db2489f17cd4e9695f8e7d76fb7b46227f84e7dede1b64f3b03 +size 1536128 diff --git a/extract/embeddings/ec_classification/ipa_pretrained/train.npy b/extract/embeddings/ec_classification/ipa_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..19ed4a4c184e03fc47a5c1e7ba1e17744b3ada1a --- /dev/null +++ b/extract/embeddings/ec_classification/ipa_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:37f79e2ddca555e9429953366a31c9a5401ebedc76fae985e0f548ee931d1f0f +size 3072128 diff --git a/extract/embeddings/ec_classification/ipa_pretrained/valid.npy b/extract/embeddings/ec_classification/ipa_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..acc680fa42439263fcf785dae42008618f70fa6e --- /dev/null +++ b/extract/embeddings/ec_classification/ipa_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:636fea37ecd09c641072781a7f67b1e0711123d040457f9b81749642d5414964 +size 768128 diff --git a/extract/embeddings/ec_classification/mace/test.npy b/extract/embeddings/ec_classification/mace/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5531c77da7b0dc994043811cb7cb69f7da98bf90 --- /dev/null +++ b/extract/embeddings/ec_classification/mace/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3fbf12e9c4d7bef561042c58fda3d0535bee2db292395c147799c3573cb1f9a5 +size 1536128 diff --git a/extract/embeddings/ec_classification/mace/train.npy b/extract/embeddings/ec_classification/mace/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..0b469c5dc78b9e06c446f4ef361e54c3582acb66 --- /dev/null +++ b/extract/embeddings/ec_classification/mace/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7fd753d36e006327f0a852a4af1573566b687550c08be7923f2506cd0f428a52 +size 3072128 diff --git a/extract/embeddings/ec_classification/mace/valid.npy b/extract/embeddings/ec_classification/mace/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..3d28a66f7501fcca0813b1e65b5878d470355efb --- /dev/null +++ b/extract/embeddings/ec_classification/mace/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a0b2568aa1b5aaa57db8a9e8e470dd30eebbbeca6572a74af1d2feb9790839b +size 768128 diff --git a/extract/embeddings/ec_classification/pottsmpnn/test.npy b/extract/embeddings/ec_classification/pottsmpnn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..4de9f52644dba2a3b4054f56cee794958e11eea8 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:95ff95145c64da235bfd48ca797ea08f5d4fb2344e8717c1b6937a045cc065c2 +size 1536128 diff --git a/extract/embeddings/ec_classification/pottsmpnn/train.npy b/extract/embeddings/ec_classification/pottsmpnn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..887ff482559e1dbc34c82e1df0498936a5c293fb --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:49eb87cb41ff5122806e330aa2a35e8900ea5399ad57408d4e84e65e29a7109d +size 3072128 diff --git a/extract/embeddings/ec_classification/pottsmpnn/valid.npy b/extract/embeddings/ec_classification/pottsmpnn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e4213f40b8cb1ad5fed6a543ddab93f2c47c705f --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:30cb2b2ee1d9de7216eb7c092e7f18850c4baaf4b94f10fa576176987b5d0173 +size 768128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_ft/test.npy b/extract/embeddings/ec_classification/pottsmpnn_ft/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..0335a3d764b0ce51b5269c55461e7617f8a67709 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_ft/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:518322e2f56779813004aa9c1ecec8c562abe49a950a63acb315da7f50cdd350 +size 1536128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_ft/train.npy b/extract/embeddings/ec_classification/pottsmpnn_ft/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f71cc2790b39046b9fa0fa9e4894385152dbc629 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_ft/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dade1b080dc5242097b45487c0674432a03b67c6db77ceeb11f6bf9d281e614b +size 3072128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_ft/valid.npy b/extract/embeddings/ec_classification/pottsmpnn_ft/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..63f4f8b031a4cb6f9492c99d100bea6b148fa23a --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_ft/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c90d23e0eb277e6b71e77a1ca6fd6781cb447741f95fc819cc1b4a40697af357 +size 768128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_pretrained/test.npy b/extract/embeddings/ec_classification/pottsmpnn_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..bfb85a6da0bdd0ffa0cdeca7c9e452acd91e3227 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0a6bcf6bb3713b638e10338bf4ba7e4ea1c23e7cd7e198a8a0c98529cc9946f4 +size 1536128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_pretrained/train.npy b/extract/embeddings/ec_classification/pottsmpnn_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..58b225256c0d88915c3ecd51414008b21c590051 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a2ffe90ae3ef50381f6aca84ddd21680cbe3993262ebe013e4d74dcb4e5b9f1 +size 3072128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_pretrained/valid.npy b/extract/embeddings/ec_classification/pottsmpnn_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..dfdb57d36a47a246a1f41ca65963ba852e5a252c --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a6253cb5a45c017cc5c2f211eace915d90610ce5fdfd8b5ccaca1d96a8711a6e +size 768128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_soluble/test.npy b/extract/embeddings/ec_classification/pottsmpnn_soluble/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..e05e0b44172b2f64ba4dde4dd9ebbf53649c2c6c --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_soluble/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f2a1fb2d94059b98340255ae8e08b689a39367ae97bd22ac14189e475da367c3 +size 1536128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_soluble/train.npy b/extract/embeddings/ec_classification/pottsmpnn_soluble/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..9eb8656befa7e268f05da732351e15ec89e47344 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_soluble/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f174974be2fcaf4dd120630306b82192dbe3fdc2737dbd8ecc3db4bc9dbf94d +size 3072128 diff --git a/extract/embeddings/ec_classification/pottsmpnn_soluble/valid.npy b/extract/embeddings/ec_classification/pottsmpnn_soluble/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5814cd178620948e37463f6c89598b9d80e7c1d4 --- /dev/null +++ b/extract/embeddings/ec_classification/pottsmpnn_soluble/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d19abfc72a2aea8c4bfeaaf7582e87653f343ebb5a23deb695fbccb18a7bde16 +size 768128 diff --git a/extract/embeddings/ec_classification/prostt5/test.npy b/extract/embeddings/ec_classification/prostt5/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5e0067bd01b7ebf83bc44b68c712aebead9546e3 --- /dev/null +++ b/extract/embeddings/ec_classification/prostt5/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0110db6f46888beecc82adc15649aed55fb6db1cfce032e1735c8eded4c693f6 +size 12288128 diff --git a/extract/embeddings/ec_classification/prostt5/train.npy b/extract/embeddings/ec_classification/prostt5/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..3b372f1488e61a16a90620d7ccd14a2e8d44cff2 --- /dev/null +++ b/extract/embeddings/ec_classification/prostt5/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:154ce4e9560b14f380d1be7747ed7ca27ff5eed4590c0eb9454d28d028ac438a +size 24576128 diff --git a/extract/embeddings/ec_classification/prostt5/valid.npy b/extract/embeddings/ec_classification/prostt5/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..b63294624365d2c9797a5cb1e8819f08eac9a051 --- /dev/null +++ b/extract/embeddings/ec_classification/prostt5/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f96ea356b1769794e5b08727444f9888dc554645026108c46efb7679676d09f +size 6144128 diff --git a/extract/embeddings/ec_classification/protbert_bfd/test.npy b/extract/embeddings/ec_classification/protbert_bfd/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..23e79bab718fdeea3613fd42e67a9a7cfd916cfb --- /dev/null +++ b/extract/embeddings/ec_classification/protbert_bfd/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ee424ee535f6710d6d60db84d0cc196e9f0412575e7d2a6821960ace17031f7 +size 12288128 diff --git a/extract/embeddings/ec_classification/protbert_bfd/train.npy b/extract/embeddings/ec_classification/protbert_bfd/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..e954ba967ffbf9dca48674c1f2e6c55ff6e080c7 --- /dev/null +++ b/extract/embeddings/ec_classification/protbert_bfd/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c380a08c5e0d3165e8d8ca743a58b492befaf78c83125e9809112e17f098a39f +size 24576128 diff --git a/extract/embeddings/ec_classification/protbert_bfd/valid.npy b/extract/embeddings/ec_classification/protbert_bfd/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..9667274d52509400b74611b4f823012729412d2f --- /dev/null +++ b/extract/embeddings/ec_classification/protbert_bfd/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f448f9182ea0fb0305790400d61273a41017e7525b9d28906bd139e8d22f6e10 +size 6144128 diff --git a/extract/embeddings/ec_classification/proteinmpnn/test.npy b/extract/embeddings/ec_classification/proteinmpnn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f6fa6fab65996f1fc2195a132e0df827307a2daa --- /dev/null +++ b/extract/embeddings/ec_classification/proteinmpnn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:955c12fbbb30c596dbfb79229e530e50828f8b407742d9559e96b31daeed2dfb +size 1536128 diff --git a/extract/embeddings/ec_classification/proteinmpnn/train.npy b/extract/embeddings/ec_classification/proteinmpnn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..9ba93915e3714530a73ada57ff8be46acf14205d --- /dev/null +++ b/extract/embeddings/ec_classification/proteinmpnn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e99c20b5a72b865bf33ce6dfbaa5c968d3fd35990fea6d110dadc19cbac84dcb +size 3072128 diff --git a/extract/embeddings/ec_classification/proteinmpnn/valid.npy b/extract/embeddings/ec_classification/proteinmpnn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f5e132986294caf090d6b4409ba9ee1dc3196cf --- /dev/null +++ b/extract/embeddings/ec_classification/proteinmpnn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f85bd51b8061c87ac5b4f23de352674ebe91ebcc58f76e9010d380021e2e906 +size 768128 diff --git a/extract/embeddings/ec_classification/prottrans_t5_xl_u50/test.npy b/extract/embeddings/ec_classification/prottrans_t5_xl_u50/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..94521c3f4a8b182b672cc975c347075ddfc05214 --- /dev/null +++ b/extract/embeddings/ec_classification/prottrans_t5_xl_u50/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1906cd8091433c9eaef14662a08739e2c08f0414b25ae1d914479397414a3c1f +size 12288128 diff --git a/extract/embeddings/ec_classification/prottrans_t5_xl_u50/train.npy b/extract/embeddings/ec_classification/prottrans_t5_xl_u50/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ae786a560e392c7f6b1983d0f136c9d8883f7442 --- /dev/null +++ b/extract/embeddings/ec_classification/prottrans_t5_xl_u50/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:74fb83119fb3203a2ddaf510660c2be62397a45a0ef63a8199520a08442ebdd8 +size 24576128 diff --git a/extract/embeddings/ec_classification/prottrans_t5_xl_u50/valid.npy b/extract/embeddings/ec_classification/prottrans_t5_xl_u50/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..3f35c0c2f8b028571fdc4cef05f810ccd72e980a --- /dev/null +++ b/extract/embeddings/ec_classification/prottrans_t5_xl_u50/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8fd137a606c27592ead137ade9279c47556a9b2592145da23342bd487abe10ca +size 6144128 diff --git a/extract/embeddings/ec_classification/ref_composition/test.npy b/extract/embeddings/ec_classification/ref_composition/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..85d14f3fd68b85c21073804a54c4129d095dd04f --- /dev/null +++ b/extract/embeddings/ec_classification/ref_composition/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:09892518355497b360caede1bb35a318abfd6256e8e780a8e329ba966b6f5c1e +size 276128 diff --git a/extract/embeddings/ec_classification/ref_composition/train.npy b/extract/embeddings/ec_classification/ref_composition/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f6466b15bef93dee9de0503015595503edf63e30 --- /dev/null +++ b/extract/embeddings/ec_classification/ref_composition/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2843d21d85f603edf86a6398c8fc9aceeacb13fca332846d7d1bf01ea1be025a +size 552128 diff --git a/extract/embeddings/ec_classification/ref_composition/valid.npy b/extract/embeddings/ec_classification/ref_composition/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..73001136e8291ab6628a82c2daf5112b8827b2c6 --- /dev/null +++ b/extract/embeddings/ec_classification/ref_composition/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f986365fa1bc6dc7f14ff6e9c242ec9fb7ece0029aa74efc636af7446cc88231 +size 138128 diff --git a/extract/embeddings/ec_classification/saprot/test.npy b/extract/embeddings/ec_classification/saprot/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..de80537356d4d621d1616f7b74c6c49c66dbc8f0 --- /dev/null +++ b/extract/embeddings/ec_classification/saprot/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9afb9f44d8592aa823d2a9ec181f95c17a2d6717868e60b79e20bfd9eddd46d3 +size 15360128 diff --git a/extract/embeddings/ec_classification/saprot/train.npy b/extract/embeddings/ec_classification/saprot/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..38e3310463a61322abdde1d8641c5f8e920f52e8 --- /dev/null +++ b/extract/embeddings/ec_classification/saprot/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f39567267a796e1deb43c3db90de930d8a1cc4ea94c24a7b5d5473665ffc5b43 +size 30720128 diff --git a/extract/embeddings/ec_classification/saprot/valid.npy b/extract/embeddings/ec_classification/saprot/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..f7251e69593c09171bd3b7839fab84b859957397 --- /dev/null +++ b/extract/embeddings/ec_classification/saprot/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a0c7c44677feb18d83ae7e6889d71c92ee58bbfc822acc74f3f68314725324b +size 7680128 diff --git a/extract/embeddings/ec_classification/schnet/test.npy b/extract/embeddings/ec_classification/schnet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..76c3856faf9ec40922391e745a657233d380ad03 --- /dev/null +++ b/extract/embeddings/ec_classification/schnet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e630f0962d939918c7d34a8db5dc4609bfe6428f4119b0225113fd0499df3af9 +size 1536128 diff --git a/extract/embeddings/ec_classification/schnet/train.npy b/extract/embeddings/ec_classification/schnet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..909b45914dec298efb2333e1e4dfcb11834f2eba --- /dev/null +++ b/extract/embeddings/ec_classification/schnet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9808ffbb87380e95b0048d4ba70066c01b614087d3b0eeb62920b281676d153 +size 3072128 diff --git a/extract/embeddings/ec_classification/schnet/valid.npy b/extract/embeddings/ec_classification/schnet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..070cdd146f1ac4a912d77fa2e6745621f105a48f --- /dev/null +++ b/extract/embeddings/ec_classification/schnet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a17fd3b494af803c3837b675404fcaf247c002226512519bfd924f0fe34731a0 +size 768128 diff --git a/extract/embeddings/ec_classification/tfn/test.npy b/extract/embeddings/ec_classification/tfn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5d3a0046eead6349924b28fb1bf2278b4b11e706 --- /dev/null +++ b/extract/embeddings/ec_classification/tfn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:af6542e4a2ad767a12d87302830be1e546dbdc4c9b8ad89ff302b257163f2c12 +size 1536128 diff --git a/extract/embeddings/ec_classification/tfn/train.npy b/extract/embeddings/ec_classification/tfn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..03ab6bd2915aa179c40f77b071aae2cdb9ce4d07 --- /dev/null +++ b/extract/embeddings/ec_classification/tfn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9819faf2ea209ae13b7c25b618d108ed2fc2c57e7caa0c12172baccf014ac35 +size 3072128 diff --git a/extract/embeddings/ec_classification/tfn/valid.npy b/extract/embeddings/ec_classification/tfn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..39a7a1f71f987f4ceb769d361fbde74ec58ac110 --- /dev/null +++ b/extract/embeddings/ec_classification/tfn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d6985995b1c373bfcc3fedbd1100eed23ca0ba4a15ee69f30e810983397bf4cf +size 768128 diff --git a/extract/embeddings/ec_classification/tfn_pretrained/test.npy b/extract/embeddings/ec_classification/tfn_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..cbf4f0659bfe4bf9842f1c8fe59bf304d44bb375 --- /dev/null +++ b/extract/embeddings/ec_classification/tfn_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7cc6ef10c70a70ffe39cea33caa294c43f61c7d10a42104aac5cd94fdc1accd4 +size 1536128 diff --git a/extract/embeddings/ec_classification/tfn_pretrained/train.npy b/extract/embeddings/ec_classification/tfn_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..6e2e9098a3626fd230168072c6dbb8468648c0e3 --- /dev/null +++ b/extract/embeddings/ec_classification/tfn_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dc8c3be3b3b621a7ad34914485ef778f88fd7698dddf7171c1290c16187e8563 +size 3072128 diff --git a/extract/embeddings/ec_classification/tfn_pretrained/valid.npy b/extract/embeddings/ec_classification/tfn_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5dfdc34570961020f6327cf93a06ef384c9d6f45 --- /dev/null +++ b/extract/embeddings/ec_classification/tfn_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:013f2a074a7b1c6a5d1d0f2ab1177da9d22ec4ed90a64048a2416375b57c9336 +size 768128 diff --git a/extract/embeddings/fluorescence/ankh_base/test.npy b/extract/embeddings/fluorescence/ankh_base/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..2d251c819a1184b29cc501b8bd98eb218a8cbb96 --- /dev/null +++ b/extract/embeddings/fluorescence/ankh_base/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:44a0ccf4bcfb36bc61e3e2fab691b8bb6a590b003d5703b0c4e75d75dd4fbce8 +size 9216128 diff --git a/extract/embeddings/fluorescence/ankh_base/train.npy b/extract/embeddings/fluorescence/ankh_base/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..8ccb4eaa7e8815c001efc7947f2694bf7d0e0e2c --- /dev/null +++ b/extract/embeddings/fluorescence/ankh_base/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4ed5b1c9b1dcfa37c500cfddbd88af7844d0d26927ff012c96fd889c1673df6c +size 18432128 diff --git a/extract/embeddings/fluorescence/ankh_base/valid.npy b/extract/embeddings/fluorescence/ankh_base/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..fe5b9cacdbaa09b03422495353d3cf994d71007d --- /dev/null +++ b/extract/embeddings/fluorescence/ankh_base/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3722728abc1a7d0e3b93efe65571637fc0f2c43d0e2a4fd4fbc026fe7cac7448 +size 4608128 diff --git a/extract/embeddings/fluorescence/cdconv/test.npy b/extract/embeddings/fluorescence/cdconv/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..0b37ccbfe97a6b7c0c7c47a8bc6fd9e43b8402b3 --- /dev/null +++ b/extract/embeddings/fluorescence/cdconv/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5c292289ac47886058e357dfdcb4ef7770ae264cd2c1776ae9842605c6b02530 +size 3072128 diff --git a/extract/embeddings/fluorescence/cdconv/train.npy b/extract/embeddings/fluorescence/cdconv/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..2b2e2828f5861d16c0f5862addc0f9920d7e32dd --- /dev/null +++ b/extract/embeddings/fluorescence/cdconv/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:731da32108a8e7833ce060b1471ff5d59b6d8542bc6b4911e6c5c9c7675ba51c +size 6144128 diff --git a/extract/embeddings/fluorescence/cdconv/valid.npy b/extract/embeddings/fluorescence/cdconv/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7f43bece00384d4a69317238096c238a8c8b606c --- /dev/null +++ b/extract/embeddings/fluorescence/cdconv/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be64a9c9d9257e71b9286d291764e114f5413c229986cd24ca96f9270c8c4919 +size 1536128 diff --git a/extract/embeddings/fluorescence/dimenet/test.npy b/extract/embeddings/fluorescence/dimenet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..0bbe8f67990b7c7f2adcb1d1f2ae1d3f82d18514 --- /dev/null +++ b/extract/embeddings/fluorescence/dimenet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:72a0dabb6c385731a685a05994f8e9c80302f4b170b836d0f332727fdc034bbd +size 1536128 diff --git a/extract/embeddings/fluorescence/dimenet/train.npy b/extract/embeddings/fluorescence/dimenet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..a492805aa344ff7bbe4ab066a983cd3403bfaadd --- /dev/null +++ b/extract/embeddings/fluorescence/dimenet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c6378e63a82bf9eb3e9390ae2a6ee8e88796e11f9d580cada62f6d2e42b59fd7 +size 3072128 diff --git a/extract/embeddings/fluorescence/dimenet/valid.npy b/extract/embeddings/fluorescence/dimenet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e0b47540ab8ceb1e124595bf87d4de118f0b1782 --- /dev/null +++ b/extract/embeddings/fluorescence/dimenet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c5cdbdca4bc6114de2c6255676b8b687cdf82fb71bad6f538df2b891fa5e670f +size 768128 diff --git a/extract/embeddings/fluorescence/esm1b/test.npy b/extract/embeddings/fluorescence/esm1b/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..8c97369f892f667851a65f6f1a48886c17465d2e --- /dev/null +++ b/extract/embeddings/fluorescence/esm1b/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5be49cbe7043823e371f8c0d7026aa338b1d818726d09feba208e836ad0dcc85 +size 15360128 diff --git a/extract/embeddings/fluorescence/esm1b/train.npy b/extract/embeddings/fluorescence/esm1b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..b5f0f3bbe60ce1c376508cbc6ff5c3b0432adab2 --- /dev/null +++ b/extract/embeddings/fluorescence/esm1b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85539a5c01ca621f522b37a900f663254210f537374724929b017f7fea5ee6f2 +size 30720128 diff --git a/extract/embeddings/fluorescence/esm1b/valid.npy b/extract/embeddings/fluorescence/esm1b/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5541e81a22150863f10aefbbb7f17a77c846535b --- /dev/null +++ b/extract/embeddings/fluorescence/esm1b/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:873d507d16d3e98ff7ed763b502545940c9ab6751b75bce5a1464f99c8c247cc +size 7680128 diff --git a/extract/embeddings/fluorescence/esm2_150m/test.npy b/extract/embeddings/fluorescence/esm2_150m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5011139734457e81f5d68ead8432e92d1d829c59 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_150m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b202da73edc26f107b43e4fa80e32227ddbd254da5717792d0aba6e54a401431 +size 7680128 diff --git a/extract/embeddings/fluorescence/esm2_150m/train.npy b/extract/embeddings/fluorescence/esm2_150m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..22d3256b6862dbfda01b0056db5c83db0c9ceb03 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_150m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:89a06fdc9261048ca617f42fed7169957fed27cc0f5cd50dc4691a4968cdbe3e +size 15360128 diff --git a/extract/embeddings/fluorescence/esm2_150m/valid.npy b/extract/embeddings/fluorescence/esm2_150m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..b41899fddfa5318b88894fdbfb54801043193132 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_150m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6faa2130863fb6ff9058c370124278f7c7ad22eb23e2c87d853986d3917f06c8 +size 3840128 diff --git a/extract/embeddings/fluorescence/esm2_35m/test.npy b/extract/embeddings/fluorescence/esm2_35m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..9e4ca154377112a11dc4337dec7109857cfd244f --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_35m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ae1d6840c8d85bb262489ac82fe9c2a43f75249830ad90dcda41b38472d01e32 +size 5760128 diff --git a/extract/embeddings/fluorescence/esm2_35m/train.npy b/extract/embeddings/fluorescence/esm2_35m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..db8c87ab41feb9b7da79ad345ead06478414f275 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_35m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:70762396cb914a8b2cabd9b2adcfae83d858baf67ec2e909cb3eef286180ad92 +size 11520128 diff --git a/extract/embeddings/fluorescence/esm2_35m/valid.npy b/extract/embeddings/fluorescence/esm2_35m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..617f74f4c856a8f83b424243865e23ceb55f55e9 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_35m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d5413c7b50ee15f0c05c5e723ee2871e712f1b6ea7342e428e3e50715e7ea579 +size 2880128 diff --git a/extract/embeddings/fluorescence/esm2_3b/test.npy b/extract/embeddings/fluorescence/esm2_3b/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..ba09f82ef5027bbc0cbfe6884fd43075a3ee4247 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_3b/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4dfc1194b1ea2ad565ced0f20e4b8ab4770eec0ce4f934b6cf1a2d4045412ed +size 30720128 diff --git a/extract/embeddings/fluorescence/esm2_3b/train.npy b/extract/embeddings/fluorescence/esm2_3b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..5f06c3672e3dac73037a7ab2d8b748efb914753f --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_3b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff403b877197d411446d51c694627959391e0905499c1966ae929aea352c1531 +size 61440128 diff --git a/extract/embeddings/fluorescence/esm2_3b/valid.npy b/extract/embeddings/fluorescence/esm2_3b/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..a73e5bba60561134c6d937255591cfe50effead9 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_3b/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e750f074efab9251fd0f91d9863063a6861ed11cd03f159112c6bb9d47704fbb +size 15360128 diff --git a/extract/embeddings/fluorescence/esm2_650m/test.npy b/extract/embeddings/fluorescence/esm2_650m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..b306075d61bcc14bff4f76f6152cd7861650f8d2 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_650m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5867c9600357dc83c4c417565f6afe5d14577eaaf070889eea4d8f26bac565eb +size 15360128 diff --git a/extract/embeddings/fluorescence/esm2_650m/train.npy b/extract/embeddings/fluorescence/esm2_650m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..90eddb4b8069d1087e57c435ff3bf6edab0c9df9 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_650m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:34f94ef13527b408949bf9323abe45718530d58416f94d97afe84336740bb64e +size 30720128 diff --git a/extract/embeddings/fluorescence/esm2_650m/valid.npy b/extract/embeddings/fluorescence/esm2_650m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..836d0b1a7a657a959c5cf0047b250c1a2ca6a97a --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_650m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b69aded00d60b13b183d44a2a9f4a483b65e6e3d145806925c351c05b7e91818 +size 7680128 diff --git a/extract/embeddings/fluorescence/esm2_8m/test.npy b/extract/embeddings/fluorescence/esm2_8m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..9ef5481c8dbf91f1f4086616c22342a163e0f8f1 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_8m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f36a639cf0fe3674386b157c360b9338f2fc23b1ca1a294c40581be756865a1 +size 3840128 diff --git a/extract/embeddings/fluorescence/esm2_8m/train.npy b/extract/embeddings/fluorescence/esm2_8m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..d256f2605ab24576f62adcf7e9046a46fb3a1b19 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_8m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3293aa24384861d71cf20ecf8921b493f6babaf5be04866bcea3091c22763352 +size 7680128 diff --git a/extract/embeddings/fluorescence/esm2_8m/valid.npy b/extract/embeddings/fluorescence/esm2_8m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5c35e411eb0fa616f11b604b0bf547fa32e55140 --- /dev/null +++ b/extract/embeddings/fluorescence/esm2_8m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2e09f739e34df991d08f10fc8fa147f7b7f841828757c1a0d6a4711118d9756e +size 1920128 diff --git a/extract/embeddings/fluorescence/esm3/test.npy b/extract/embeddings/fluorescence/esm3/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..837875a403cb7696ec1f02deee318a36ae62e6d2 --- /dev/null +++ b/extract/embeddings/fluorescence/esm3/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:45df408471e45ee270f1223e17a657e5f67131041b6b17b58bd28e65bd4f6179 +size 18432128 diff --git a/extract/embeddings/fluorescence/esm3/train.npy b/extract/embeddings/fluorescence/esm3/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..2e0a6dfdaff3aad8da53dc0f69ac0c61317e5f46 --- /dev/null +++ b/extract/embeddings/fluorescence/esm3/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ab47a17273f04eb9f52bba100d9baa77e13e7ddf13a79f971ff4f47a897f5894 +size 36864128 diff --git a/extract/embeddings/fluorescence/esm3/valid.npy b/extract/embeddings/fluorescence/esm3/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..4d37bf5e564e7a333e1b5a93e54f2add6bfae91a --- /dev/null +++ b/extract/embeddings/fluorescence/esm3/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ae21e255e68ee9dfc03dfec82a5595a2d3d6ed00d045a7c0c066e4ba8050e67b +size 9216128 diff --git a/extract/embeddings/fluorescence/esm_if1/test.npy b/extract/embeddings/fluorescence/esm_if1/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..da1ce076123584423b869abf5acbc15cf0bf9f24 --- /dev/null +++ b/extract/embeddings/fluorescence/esm_if1/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:80489f80bf59a2500a216d967ec6eab87cf7907445a8ee9f56e779c9efa07368 +size 6144128 diff --git a/extract/embeddings/fluorescence/esm_if1/train.npy b/extract/embeddings/fluorescence/esm_if1/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..8802ec061892e5ed757396e18605946f31d3ea60 --- /dev/null +++ b/extract/embeddings/fluorescence/esm_if1/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b429e43fac34f30f4cb45199c89a2b0a9679c9a45742faf8af9dede9d20e519c +size 12288128 diff --git a/extract/embeddings/fluorescence/esm_if1/valid.npy b/extract/embeddings/fluorescence/esm_if1/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..27278332f3d712d83a7766380f385d4b38e3c533 --- /dev/null +++ b/extract/embeddings/fluorescence/esm_if1/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b6683438b7b06fac38d55af16ce64b7f7969c89f810c49a82f81e270d0317d38 +size 3072128 diff --git a/extract/embeddings/fluorescence/foldseek_3di/test.npy b/extract/embeddings/fluorescence/foldseek_3di/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..0ac7b890729cddf1664ef117c9860ec64b4f0b78 --- /dev/null +++ b/extract/embeddings/fluorescence/foldseek_3di/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:86f36c9783acddd25cee5a0b453aa25940400328dc9a2d7230b60660acda1c07 +size 240128 diff --git a/extract/embeddings/fluorescence/foldseek_3di/train.npy b/extract/embeddings/fluorescence/foldseek_3di/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..5aa4f7c43aa18c41f30672a87c1d04efb25e8b0a --- /dev/null +++ b/extract/embeddings/fluorescence/foldseek_3di/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e56d4b77c38389992147c0fd4c19a2fbc50b7a1601af4a1d80b0bdec8c6b117f +size 480128 diff --git a/extract/embeddings/fluorescence/foldseek_3di/valid.npy b/extract/embeddings/fluorescence/foldseek_3di/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5d9b4accbacef65af13a06f48cd519231eeee16a --- /dev/null +++ b/extract/embeddings/fluorescence/foldseek_3di/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0d6c63e017b747f66e4d5242be1d4c77bacd8d32ecb801369b793b7f21cc8678 +size 120128 diff --git a/extract/embeddings/fluorescence/foldvision/test.npy b/extract/embeddings/fluorescence/foldvision/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..1a294e26953e9f9afa0ac33073656b7274cd9a95 --- /dev/null +++ b/extract/embeddings/fluorescence/foldvision/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56b184b153880a8bea112a556f4f6711bb4d160f76a0f7ee3bd70312b32e110e +size 12288128 diff --git a/extract/embeddings/fluorescence/foldvision/train.npy b/extract/embeddings/fluorescence/foldvision/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..140783c26e1ff04ef03037f22e08ab8825466fd9 --- /dev/null +++ b/extract/embeddings/fluorescence/foldvision/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fbb0ef5c86184368fa214a1b16f42e956f76b6c3194028c863c017637d44a8d5 +size 24576128 diff --git a/extract/embeddings/fluorescence/foldvision/valid.npy b/extract/embeddings/fluorescence/foldvision/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..2219a271d8fc85f2742c4c0b0fc0dbdc22c230d3 --- /dev/null +++ b/extract/embeddings/fluorescence/foldvision/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:586215a31baf05e4e8b27126ea2295af740d898206de73b47d60e74139025ba3 +size 6144128 diff --git a/extract/embeddings/fluorescence/gcpnet_pretrained/test.npy b/extract/embeddings/fluorescence/gcpnet_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..d047bd73153983c7f1a202085df80f20a69586f0 --- /dev/null +++ b/extract/embeddings/fluorescence/gcpnet_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ecf1c416b45e336ed4707bf55f451aee123a9a75f09b177fd47ca6a2089ff386 +size 1392128 diff --git a/extract/embeddings/fluorescence/gcpnet_pretrained/train.npy b/extract/embeddings/fluorescence/gcpnet_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..6576fdf62536a3886bd19a61704dc07bc821d3e0 --- /dev/null +++ b/extract/embeddings/fluorescence/gcpnet_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e45087f644ffa30d1ca1427cc1ca63eb14a113204ffeda612d42c327a0b7b3f1 +size 2784128 diff --git a/extract/embeddings/fluorescence/gcpnet_pretrained/valid.npy b/extract/embeddings/fluorescence/gcpnet_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..193706cb7722e3680f73f0e1e6174980825bea25 --- /dev/null +++ b/extract/embeddings/fluorescence/gcpnet_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b552d7a2176489aafa50e6ce26b063ea0e2331ea6271777b921b3faf9484022 +size 696128 diff --git a/extract/embeddings/fluorescence/gcpnet_random/test.npy b/extract/embeddings/fluorescence/gcpnet_random/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..bb9792c9523009302635fb08c10d5b0d26f5c74b --- /dev/null +++ b/extract/embeddings/fluorescence/gcpnet_random/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4a3009b01bdde2af2a8289812abf9fbe18c87cda319694f52871aa0cfd825a4b +size 1392128 diff --git a/extract/embeddings/fluorescence/gcpnet_random/train.npy b/extract/embeddings/fluorescence/gcpnet_random/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f9a972adda75d91e3d3a46635e99192310abdedf --- /dev/null +++ b/extract/embeddings/fluorescence/gcpnet_random/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:53f372f9ebc00972f10c213050af84d4327b3cf6045e1d7b06da2dffd0787945 +size 2784128 diff --git a/extract/embeddings/fluorescence/gcpnet_random/valid.npy b/extract/embeddings/fluorescence/gcpnet_random/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..f12ca718834123000da09f1081531fd336c66134 --- /dev/null +++ b/extract/embeddings/fluorescence/gcpnet_random/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3cb0aeff750f46b8b98e2b5d09debaa497a960a92787397c8f204109b47bad26 +size 696128 diff --git a/extract/embeddings/fluorescence/gearnet/test.npy b/extract/embeddings/fluorescence/gearnet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..7b55b77a1c2e96fb73f6376dfb94f256f0aa30fa --- /dev/null +++ b/extract/embeddings/fluorescence/gearnet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:563b40d3685c7bfb5236c34b13180761bac34e97854421435fd39e5399ecbadf +size 6144128 diff --git a/extract/embeddings/fluorescence/gearnet/train.npy b/extract/embeddings/fluorescence/gearnet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..7b1154d5612c1a2264569ea5ec110e6df51b2984 --- /dev/null +++ b/extract/embeddings/fluorescence/gearnet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a4decc42b2d82651b4185329c906b47ae3df0094137b77d65dacb45c3b57f0f7 +size 12288128 diff --git a/extract/embeddings/fluorescence/gearnet/valid.npy b/extract/embeddings/fluorescence/gearnet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5a67b09838d2ac67bf5ac6ffa13c28cc889399fb --- /dev/null +++ b/extract/embeddings/fluorescence/gearnet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1290bbecf9bd0512d7d20da54ccbdae42530924d801a59c58740f931f146cc9c +size 3072128 diff --git a/extract/embeddings/fluorescence/gearnet_pretrained/test.npy b/extract/embeddings/fluorescence/gearnet_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5210df6da5ab884af15b5d9649f15e4703dbcabb --- /dev/null +++ b/extract/embeddings/fluorescence/gearnet_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3c7b57423831099b6c4c7b4cf2285df16614c5b2a99c78ffbeb510fc079f2154 +size 6144128 diff --git a/extract/embeddings/fluorescence/gearnet_pretrained/train.npy b/extract/embeddings/fluorescence/gearnet_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ada8f5cd0ea4a0de3757d6b4e737f705ff9d2b6e --- /dev/null +++ b/extract/embeddings/fluorescence/gearnet_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3ec34544bce97b89a1b6e8e25c1f1aca6e8d079338e96d006f1a949b60098ec +size 12288128 diff --git a/extract/embeddings/fluorescence/gearnet_pretrained/valid.npy b/extract/embeddings/fluorescence/gearnet_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..8a616b50a5a56e939dd11e366156de6315d3f759 --- /dev/null +++ b/extract/embeddings/fluorescence/gearnet_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f9997fd43c2886185f0513ac16e9cc30351a2c2d712f015010ddcf7c049a4739 +size 3072128 diff --git a/extract/embeddings/fluorescence/gvp/test.npy b/extract/embeddings/fluorescence/gvp/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ce70c982647ac335591458dcd3f63be0c73300c --- /dev/null +++ b/extract/embeddings/fluorescence/gvp/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:275e55cc6df7f70b72a4b00dd25a5fcbe8cb926d8d6dd16894b3b90efed22e82 +size 1392128 diff --git a/extract/embeddings/fluorescence/gvp/train.npy b/extract/embeddings/fluorescence/gvp/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..6ef0bd1baafb3347f104a0e9ba9c04f3215615e4 --- /dev/null +++ b/extract/embeddings/fluorescence/gvp/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b27c7d60727f6bdd58a4d830cd59f0cfc67770473e899b62773c5064fd60a81 +size 2784128 diff --git a/extract/embeddings/fluorescence/gvp/valid.npy b/extract/embeddings/fluorescence/gvp/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..c21b3d4ff022a5743a09b47bd2838efb2891679f --- /dev/null +++ b/extract/embeddings/fluorescence/gvp/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e91d77c49b13c36a2201115bef34fe16f571740a878718ff154f7945730607b4 +size 696128 diff --git a/extract/embeddings/fluorescence/ipa/test.npy b/extract/embeddings/fluorescence/ipa/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..4fb76a9819e00af5140caf184c56aca3a93fe340 --- /dev/null +++ b/extract/embeddings/fluorescence/ipa/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c6328cef0f44ab7b3c3df124436e6abb94c2fe6a645987ce16d39335a430040 +size 1536128 diff --git a/extract/embeddings/fluorescence/ipa/train.npy b/extract/embeddings/fluorescence/ipa/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..44cbf1bf98501b9c39889e1df61c6c46eb03ac20 --- /dev/null +++ b/extract/embeddings/fluorescence/ipa/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:854247a7941b431908e0dd803614a1314af19ffec279fd24214d717ffcde1a09 +size 3072128 diff --git a/extract/embeddings/fluorescence/ipa/valid.npy b/extract/embeddings/fluorescence/ipa/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..c8b4265e4d378e7a7ab7a7bacc7fab0944f5bede --- /dev/null +++ b/extract/embeddings/fluorescence/ipa/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ab37f4c6f527f25935de7356c3418dc504eeec47abdf9f7e60ee51b1657c3d85 +size 768128 diff --git a/extract/embeddings/fluorescence/ipa_pretrained/test.npy b/extract/embeddings/fluorescence/ipa_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..738ef7b96c395aebf776d04eab92bfc6e28d7699 --- /dev/null +++ b/extract/embeddings/fluorescence/ipa_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c5dda3f4865309fcfea80447f37ab71f33b4278e0890b9e66b098c921ea98a4d +size 1536128 diff --git a/extract/embeddings/fluorescence/ipa_pretrained/train.npy b/extract/embeddings/fluorescence/ipa_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..2589d8fc9ef0a370bdeb1cb47da4765a3b51e194 --- /dev/null +++ b/extract/embeddings/fluorescence/ipa_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e58cdd18b54b73741a64444bc0aeff15cadb7b67a438dd4aa5d7145aae137f3d +size 3072128 diff --git a/extract/embeddings/fluorescence/ipa_pretrained/valid.npy b/extract/embeddings/fluorescence/ipa_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..ef075e905eb966ea54e72c169c37d1726dca522e --- /dev/null +++ b/extract/embeddings/fluorescence/ipa_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e50035cc4b7594bdb927eb47682d1f6952fd34bb8573f217f848004693e0981 +size 768128 diff --git a/extract/embeddings/fluorescence/mace/test.npy b/extract/embeddings/fluorescence/mace/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..6844ba92d2445f524ee5dd06f8efba980dc4d7a0 --- /dev/null +++ b/extract/embeddings/fluorescence/mace/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ba40a7b9e39f9fbe4fb5b6e64d6f442fe18d9a27ca5b46c88c9eb1ff51596281 +size 1536128 diff --git a/extract/embeddings/fluorescence/mace/train.npy b/extract/embeddings/fluorescence/mace/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..61d24f771ab97a252be491300e9a5d681f1538e1 --- /dev/null +++ b/extract/embeddings/fluorescence/mace/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0bc8f08357d83282f906de3f44c311c9c84097b355e33fb4b0e46ab4d0885657 +size 3072128 diff --git a/extract/embeddings/fluorescence/mace/valid.npy b/extract/embeddings/fluorescence/mace/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..f988c0cef43ed6b6218fb3ca8085ea488f8129d8 --- /dev/null +++ b/extract/embeddings/fluorescence/mace/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:47f4f91c46d19afe69fb735f09595d58a5fb4c71be1b7b099af5c3e5fe43872c +size 768128 diff --git a/extract/embeddings/fluorescence/pottsmpnn/test.npy b/extract/embeddings/fluorescence/pottsmpnn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..15c8473f261d1e403281c079e3fa84859449ff62 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5ee3d47a5d548fe8c01bfa39bcb16b82da3277d712370e46b06e5602aa4b96ba +size 1536128 diff --git a/extract/embeddings/fluorescence/pottsmpnn/train.npy b/extract/embeddings/fluorescence/pottsmpnn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..fc888f2f7bbe54e54c2c3ecae735d5f0869c8d79 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a3e328edbdbc1b32c6218dc4b62356e02d7f2905688922fffb139ff64f3b9cd +size 3072128 diff --git a/extract/embeddings/fluorescence/pottsmpnn/valid.npy b/extract/embeddings/fluorescence/pottsmpnn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..0ee700b326b611f92302332720e5197f5ba75654 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:78ab09e2ff32f199a3f3a08afa352b8996cd9f18118cbcf791aad9d418bb4e86 +size 768128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_ft/test.npy b/extract/embeddings/fluorescence/pottsmpnn_ft/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..2643fec9a6c7f165e3beb891b352bde0c4a7a3ca --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_ft/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93958844fbf4449b74483c6237ae5d7c906292254d58bd437709a21343903e5b +size 1536128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_ft/train.npy b/extract/embeddings/fluorescence/pottsmpnn_ft/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f1a824ebaea29b380a3fddc22567607daff1cbb6 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_ft/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f92be3f8d1039368332b33f834d2605f8db4e5bc6387a0cc9deba4174e35608a +size 3072128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_ft/valid.npy b/extract/embeddings/fluorescence/pottsmpnn_ft/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..f425365169348da183bda70017c7216f6195d8fb --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_ft/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cb914ba52f1ea4b7b7669c65506e223e8778b43f2e75411f01b3fba913318e81 +size 768128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_pretrained/test.npy b/extract/embeddings/fluorescence/pottsmpnn_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..38a222c2ad8fb1fdc7e5d49d0bd9564940b0c60e --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51f62a36653cecb192336f80046cba34e0d620b6938c04bd20882c168d830302 +size 1536128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_pretrained/train.npy b/extract/embeddings/fluorescence/pottsmpnn_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..be29af3da5eee2fe2dd0839192cc41714f7ce273 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1194b6326c62214438abf4877cf9084b99e67ba40cc5097516c5228b83516fc1 +size 3072128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_pretrained/valid.npy b/extract/embeddings/fluorescence/pottsmpnn_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..581877306c13a32ae791a376c674f6e7235b51d9 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:966440af12ee42d7b30252d581504deb74ceb604283068952510f75254438b8c +size 768128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_soluble/test.npy b/extract/embeddings/fluorescence/pottsmpnn_soluble/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5b3f42b9de6fb2089964884fb312846c10e73ce4 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_soluble/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0a346a3584262c6a5d75856a801173f117e59bb7cc4bb448c4af2d5a1f21a1b9 +size 1536128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_soluble/train.npy b/extract/embeddings/fluorescence/pottsmpnn_soluble/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..591aa7477d5dc9dd101ccd08b2fc3ba910eae802 --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_soluble/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:57b9d2198dfce1afb5b6bab1d284121c07e5f2eb3e4e3e010701c2f6916c85e5 +size 3072128 diff --git a/extract/embeddings/fluorescence/pottsmpnn_soluble/valid.npy b/extract/embeddings/fluorescence/pottsmpnn_soluble/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..666876f39ba8f436b63fd7bb0e3e03bb208f4cfd --- /dev/null +++ b/extract/embeddings/fluorescence/pottsmpnn_soluble/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3b9a23da96a3cb950151792d6e718b06d3cffd29750110ddf1943cf9afb94238 +size 768128 diff --git a/extract/embeddings/fluorescence/prostt5/test.npy b/extract/embeddings/fluorescence/prostt5/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..b5e5a752f9ab802c97ba9062c28eb371add33649 --- /dev/null +++ b/extract/embeddings/fluorescence/prostt5/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:48d4142e316847964e84281a5ab016f75821c104eaca6e73c4618afd23c69c77 +size 12288128 diff --git a/extract/embeddings/fluorescence/prostt5/train.npy b/extract/embeddings/fluorescence/prostt5/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..e861b066fb0560a16a26a9c5e70234af17568930 --- /dev/null +++ b/extract/embeddings/fluorescence/prostt5/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dec54571dd0136a00bbb5ede4c2e79c3148c9d4bc3897e7a8f8b37d5d3d2ffa4 +size 24576128 diff --git a/extract/embeddings/fluorescence/prostt5/valid.npy b/extract/embeddings/fluorescence/prostt5/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..d4376b8137716ebc2b4ffaa34f8b0de31f16924f --- /dev/null +++ b/extract/embeddings/fluorescence/prostt5/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:df13cee8a363b41b04a10eb6916f9df77d9aef5e36256626aca5f10d352022bb +size 6144128 diff --git a/extract/embeddings/fluorescence/protbert_bfd/test.npy b/extract/embeddings/fluorescence/protbert_bfd/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..c9f1a62a3b7eb7cc277b7f036198cf06b3a062ce --- /dev/null +++ b/extract/embeddings/fluorescence/protbert_bfd/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:60d391db177ebdc206bf4304f522e557211807e20009339ec27e8c615c319e90 +size 12288128 diff --git a/extract/embeddings/fluorescence/protbert_bfd/train.npy b/extract/embeddings/fluorescence/protbert_bfd/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..d45589b8ca71ebfabb19a8f2a4311e6846890bd9 --- /dev/null +++ b/extract/embeddings/fluorescence/protbert_bfd/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ca711540e91ebad638ce934e3792e36822b782b8fe4e7cc95e6fd1342ab03364 +size 24576128 diff --git a/extract/embeddings/fluorescence/protbert_bfd/valid.npy b/extract/embeddings/fluorescence/protbert_bfd/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..dcad4464bbb73cc7312d3033fccce9b5193d9a82 --- /dev/null +++ b/extract/embeddings/fluorescence/protbert_bfd/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:174acb32adb8bb1a7067391a5540a80662066340d598b5c498f986dff7effd6e +size 6144128 diff --git a/extract/embeddings/fluorescence/proteinmpnn/test.npy b/extract/embeddings/fluorescence/proteinmpnn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..77cf6b0238513d69ad763048e9a8cc358ff9ee56 --- /dev/null +++ b/extract/embeddings/fluorescence/proteinmpnn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41c259a80e03ce2fa1322c0f12fa7c8e4189b08892e3e5ffb04911a64f0e28fc +size 1536128 diff --git a/extract/embeddings/fluorescence/proteinmpnn/train.npy b/extract/embeddings/fluorescence/proteinmpnn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..3bb48295e212e5de72dc65be60caa1d59105ef43 --- /dev/null +++ b/extract/embeddings/fluorescence/proteinmpnn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dab1def2425ba545896741198fd4d1cd8a4b74bc46b24b40a11ae250b97ccce9 +size 3072128 diff --git a/extract/embeddings/fluorescence/proteinmpnn/valid.npy b/extract/embeddings/fluorescence/proteinmpnn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e8650b73a610404708faba3a7c54ae443205ce32 --- /dev/null +++ b/extract/embeddings/fluorescence/proteinmpnn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c7d88acc37058145e16e74866889923fd36724267e68250ebf2569d35d39fead +size 768128 diff --git a/extract/embeddings/fluorescence/prottrans_t5_xl_u50/test.npy b/extract/embeddings/fluorescence/prottrans_t5_xl_u50/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..57c9d7dd6e7124e52d6d2b8f1bdcde5cd974cd5e --- /dev/null +++ b/extract/embeddings/fluorescence/prottrans_t5_xl_u50/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0d85c1939c5d4a570ce409d624046fc867c09b659454bc7a7367c98e07416b4b +size 12288128 diff --git a/extract/embeddings/fluorescence/prottrans_t5_xl_u50/train.npy b/extract/embeddings/fluorescence/prottrans_t5_xl_u50/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..df4e8467663af54a50944bcf90d9f4a17978061b --- /dev/null +++ b/extract/embeddings/fluorescence/prottrans_t5_xl_u50/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:68b4c820a53495b201681ea116d1d0b95e6c28c0fc436726ef2231a1233a5377 +size 24576128 diff --git a/extract/embeddings/fluorescence/prottrans_t5_xl_u50/valid.npy b/extract/embeddings/fluorescence/prottrans_t5_xl_u50/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e0f95543bfadfbeef195cea18d9547a8405f4927 --- /dev/null +++ b/extract/embeddings/fluorescence/prottrans_t5_xl_u50/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:82f728e77b019b6f09dbc7e1f2e5cacdda99adfbd580910f5ab87d3f53f50bcc +size 6144128 diff --git a/extract/embeddings/fluorescence/ref_composition/test.npy b/extract/embeddings/fluorescence/ref_composition/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..41c39bb2021808a0bd5ec9c13f513f9fe553450d --- /dev/null +++ b/extract/embeddings/fluorescence/ref_composition/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:55e25a4117d4e6a77e26e499d89d58a912f2f41d4cfbe2e6b9cd3ca7337b40b8 +size 276128 diff --git a/extract/embeddings/fluorescence/ref_composition/train.npy b/extract/embeddings/fluorescence/ref_composition/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..9e95afaff1badfacef9a3c35c2f82735e4e64d82 --- /dev/null +++ b/extract/embeddings/fluorescence/ref_composition/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c26dbfe6037dba4cc98b4cc593680f34439de57ede39e3ac260ab96b546caf99 +size 552128 diff --git a/extract/embeddings/fluorescence/ref_composition/valid.npy b/extract/embeddings/fluorescence/ref_composition/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..eb61bad431dc5e35bd75b524058cb2e3e45446f5 --- /dev/null +++ b/extract/embeddings/fluorescence/ref_composition/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:74265e8ee54053081f8699ff686af37c3a951db17ba5be092fe66976b00bbb7a +size 138128 diff --git a/extract/embeddings/fluorescence/saprot/test.npy b/extract/embeddings/fluorescence/saprot/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..6ea69739511b5586359f293300b2dfa069817834 --- /dev/null +++ b/extract/embeddings/fluorescence/saprot/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5895fc4fff5336d891ba565543fee2d378b59201effa9de29ee3b253789506eb +size 15360128 diff --git a/extract/embeddings/fluorescence/saprot/train.npy b/extract/embeddings/fluorescence/saprot/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..4b643c8a62f5a9448f6c0e9f7ac4b5e9226ba64a --- /dev/null +++ b/extract/embeddings/fluorescence/saprot/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ba4cee5fa5d71b3277c0a543611a8c8f3f02f024a63a936347c338d06bb66876 +size 30720128 diff --git a/extract/embeddings/fluorescence/saprot/valid.npy b/extract/embeddings/fluorescence/saprot/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..250a8d58aa2d1122621194c2c2300753be6b0a8f --- /dev/null +++ b/extract/embeddings/fluorescence/saprot/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85622ecc6c36d2d81ce511ac3c353695bc4f6875c00b8e810ade7edccec54b87 +size 7680128 diff --git a/extract/embeddings/fluorescence/schnet/test.npy b/extract/embeddings/fluorescence/schnet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..586b024f65bd852c974df64b15442304ef0820d5 --- /dev/null +++ b/extract/embeddings/fluorescence/schnet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d3d981ba151f035c011d83f9049ee8eaaca0ffee2aee3f9fa0442909ccf11779 +size 1536128 diff --git a/extract/embeddings/fluorescence/schnet/train.npy b/extract/embeddings/fluorescence/schnet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..a750e1cd4dcc13b7db8f329fee327b7f58fd8bd8 --- /dev/null +++ b/extract/embeddings/fluorescence/schnet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ee9684f26ad52a01c992db37a466d95996bf97f4b8fa0e2fc78b890590a28b1f +size 3072128 diff --git a/extract/embeddings/fluorescence/schnet/valid.npy b/extract/embeddings/fluorescence/schnet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..4286119e5e659915ae1e1dbca1ec2b4fe0fce0cf --- /dev/null +++ b/extract/embeddings/fluorescence/schnet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:895597eecf83dc4924e761990ea99a9becfccd749c5b7a61ce6bf164a8152499 +size 768128 diff --git a/extract/embeddings/fluorescence/tfn/test.npy b/extract/embeddings/fluorescence/tfn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..6580a66f38ee2534cc1a96a462cf26592c1eeffc --- /dev/null +++ b/extract/embeddings/fluorescence/tfn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9d2e74961dce66e435e8c5a4e4fb37105b7226296b32f50f5053a395f682f0d +size 1536128 diff --git a/extract/embeddings/fluorescence/tfn/train.npy b/extract/embeddings/fluorescence/tfn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..062b2d18bce56121acbea92b9634caa960ca4211 --- /dev/null +++ b/extract/embeddings/fluorescence/tfn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5473eb0a366b72def832a7199247eda73a7265544d3304b2ec8c3c7f3b42475f +size 3072128 diff --git a/extract/embeddings/fluorescence/tfn/valid.npy b/extract/embeddings/fluorescence/tfn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..22305dda714dc3be328c6ba19c26c0b213c842e5 --- /dev/null +++ b/extract/embeddings/fluorescence/tfn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e121b1045ba6f9c2631711167f537736b904f3f1c774d67dc1a8dbad42ff0bb3 +size 768128 diff --git a/extract/embeddings/fluorescence/tfn_pretrained/test.npy b/extract/embeddings/fluorescence/tfn_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..57db07a6975c2b50bb623e9db0eabebd38fa59b9 --- /dev/null +++ b/extract/embeddings/fluorescence/tfn_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b9abcd5d49e1c48ae9e9f2c61803a5c5737393b3f8806d2755cee8c8d52fdccd +size 1536128 diff --git a/extract/embeddings/fluorescence/tfn_pretrained/train.npy b/extract/embeddings/fluorescence/tfn_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ce691e0950c1c313a9e81ba1a1d68e8c763488e2 --- /dev/null +++ b/extract/embeddings/fluorescence/tfn_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:68920014017e321d21f0b86dc34dbb78828797c6d4a8686856449472fd3e50ab +size 3072128 diff --git a/extract/embeddings/fluorescence/tfn_pretrained/valid.npy b/extract/embeddings/fluorescence/tfn_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..ef8699a62d45e8dfbdddd76259ad15f70565db38 --- /dev/null +++ b/extract/embeddings/fluorescence/tfn_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87bdc457ec0015687387709f9d082287fda9c4f30fada50b0e6b014a599f199d +size 768128 diff --git a/extract/embeddings/go_bp/ankh_base/test.npy b/extract/embeddings/go_bp/ankh_base/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f9fb7cc35966b800a0876d76e985e6d7da8244a8 --- /dev/null +++ b/extract/embeddings/go_bp/ankh_base/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8fc8e78b706b653410a995feec954b05b8248cf3f8bb7cd02bf31c8dcfce940f +size 8918144 diff --git a/extract/embeddings/go_bp/ankh_base/train.npy b/extract/embeddings/go_bp/ankh_base/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..0eae10992e36a3e99e4224bc66977d1b15000439 --- /dev/null +++ b/extract/embeddings/go_bp/ankh_base/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3c7d74ad2f802f6ad1d4fe0528dea5f0f953706a731ab871266a143f301cdfa +size 18432128 diff --git a/extract/embeddings/go_bp/ankh_base/valid.npy b/extract/embeddings/go_bp/ankh_base/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..1cf6f18ca378660e2a0f7b1f36fc95a7d5cf1fe3 --- /dev/null +++ b/extract/embeddings/go_bp/ankh_base/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e87e71b722359928ab56ca3a0bb429f503bdeae16935ba51ac41f888e538f70 +size 4608128 diff --git a/extract/embeddings/go_bp/gcpnet_random/train.npy b/extract/embeddings/go_bp/gcpnet_random/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..4d79dea40272fe55028dea348c026eedbf1b6f84 --- /dev/null +++ b/extract/embeddings/go_bp/gcpnet_random/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7b25f72600595a8deabfb7c61268eca068cc01e448dada5248a01a2adfc41610 +size 2784128 diff --git a/extract/embeddings/solubility/ankh_base/test.npy b/extract/embeddings/solubility/ankh_base/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..111c34db74f7febf125cb248d328023dd52d9395 --- /dev/null +++ b/extract/embeddings/solubility/ankh_base/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9acefbc44972721800a0f5eb73fe6fedee7670d4502928f68fb80fc942e2ec35 +size 4082816 diff --git a/extract/embeddings/solubility/ankh_base/train.npy b/extract/embeddings/solubility/ankh_base/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..c2370be1a0963b4f5fc55dae22a877efb26588b3 --- /dev/null +++ b/extract/embeddings/solubility/ankh_base/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fa33d1c0aa67cde95531a9bd8620fbc940f076bf26edf4b818da26e6e19e2529 +size 16641152 diff --git a/extract/embeddings/solubility/ankh_base/valid.npy b/extract/embeddings/solubility/ankh_base/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..01b726d2f231556e552878de1c8ae580437a8c0b --- /dev/null +++ b/extract/embeddings/solubility/ankh_base/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c92352c28013bb0831a2fffb9c28c55376c31df079a26dda5def4e7158dec023 +size 4187264 diff --git a/extract/embeddings/solubility/cdconv/test.npy b/extract/embeddings/solubility/cdconv/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..aa9e6c7c06c810c63877d287963efa7418f35d89 --- /dev/null +++ b/extract/embeddings/solubility/cdconv/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:21538d32a664785c6767e78b8666fd15307ff53d8b5b3e095221ee1eb6ec5ba0 +size 1361024 diff --git a/extract/embeddings/solubility/cdconv/train.npy b/extract/embeddings/solubility/cdconv/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..a3c39cdc7c2ca6b66241a08aa723c8f2cd4787b1 --- /dev/null +++ b/extract/embeddings/solubility/cdconv/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:17d35cdaaddd55916332d73af854716ca38517f3ff3cdfcb4675e96d7a677247 +size 5547136 diff --git a/extract/embeddings/solubility/cdconv/valid.npy b/extract/embeddings/solubility/cdconv/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..46bd8fe31e8219151a176b7f85f0add2d37d71d3 --- /dev/null +++ b/extract/embeddings/solubility/cdconv/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3bc3bd53baa3bf0d54cda65a88172321dfd64e6578bedbea2a30507b49b707c9 +size 1395840 diff --git a/extract/embeddings/solubility/dimenet/test.npy b/extract/embeddings/solubility/dimenet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..737c1ba0a3f09700916a1032dbd45034171029a8 --- /dev/null +++ b/extract/embeddings/solubility/dimenet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b69d850216917b0ceef5078bdca7fdd5bb1a257ea4cabd315c82d7efa36da3f4 +size 680576 diff --git a/extract/embeddings/solubility/dimenet/train.npy b/extract/embeddings/solubility/dimenet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..2c0c71ab3d26f4136a992cab3c8f8c29e18c38f3 --- /dev/null +++ b/extract/embeddings/solubility/dimenet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dffada34795969b1e0ef4963a7ea27bf91c097039effcecc28e974d3bd9a9959 +size 2773632 diff --git a/extract/embeddings/solubility/dimenet/valid.npy b/extract/embeddings/solubility/dimenet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7c6fe17a95ea3d3d19a4b0c34aac53c68738c202 --- /dev/null +++ b/extract/embeddings/solubility/dimenet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3cf4031864730391cbf79ccd86ba401115f158691dbcd4ec29022e4b3a19bbf1 +size 697984 diff --git a/extract/embeddings/solubility/esm1b/test.npy b/extract/embeddings/solubility/esm1b/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..c3b80ab000cdcc3fb02cf0e6e349f2c407c5474c --- /dev/null +++ b/extract/embeddings/solubility/esm1b/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3fdcf4267448fbe579a96fc9ea45c793b95a953d07304b16e283f5e253a6a246 +size 6804608 diff --git a/extract/embeddings/solubility/esm1b/train.npy b/extract/embeddings/solubility/esm1b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..bd42fc6ff1bf3da366af569c1b5f6516fce2e652 --- /dev/null +++ b/extract/embeddings/solubility/esm1b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9627dc252c63d2d1b3c41081852864db2da3721d53b47479842cab979ec33c99 +size 27735168 diff --git a/extract/embeddings/solubility/esm1b/valid.npy b/extract/embeddings/solubility/esm1b/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ef345931698d99f2514335b726c7f97e5b21a0e --- /dev/null +++ b/extract/embeddings/solubility/esm1b/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e53e2968b65e93e5c7345329ae402b89c60c5d7e42ba1be971e9d4de274f7c74 +size 6978688 diff --git a/extract/embeddings/solubility/esm2_150m/test.npy b/extract/embeddings/solubility/esm2_150m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..0e811b8f3f98139c0bf0fe4bbc14c1b7e13032dd --- /dev/null +++ b/extract/embeddings/solubility/esm2_150m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d4d39f6e76aa76f74f8b2f86e0d355f05db2d505923ced93ee29c139c8e380ed +size 3402368 diff --git a/extract/embeddings/solubility/esm2_150m/train.npy b/extract/embeddings/solubility/esm2_150m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..242b04db77b8f535f7a374c39c1c00e478eeea74 --- /dev/null +++ b/extract/embeddings/solubility/esm2_150m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:66ef323cf83292048d35c41df3f131dfb568926ab8bcbf76397a266467afa383 +size 13867648 diff --git a/extract/embeddings/solubility/esm2_150m/valid.npy b/extract/embeddings/solubility/esm2_150m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..fc7a0fbf33eb26e8b2ec5d469bd4fd12a84a286f --- /dev/null +++ b/extract/embeddings/solubility/esm2_150m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef67054a487ca3812bda809ce2029df95a0d1e43bea2a27ed9d695385ad89ea4 +size 3489408 diff --git a/extract/embeddings/solubility/esm2_35m/test.npy b/extract/embeddings/solubility/esm2_35m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..6a965d6ec6fa036b889a772f56acf85ea1bccde1 --- /dev/null +++ b/extract/embeddings/solubility/esm2_35m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f6fd67d00560c4a6e15a3a103ecbd90bb0914b858c3148882fba6c6e3500b10 +size 2551808 diff --git a/extract/embeddings/solubility/esm2_35m/train.npy b/extract/embeddings/solubility/esm2_35m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..44b19b6ad9d46d39ed285d541414a27b89b5fc0c --- /dev/null +++ b/extract/embeddings/solubility/esm2_35m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0bd53c3a86a1a8f379e4aa5d80a338e6e36cfda8a7df05694734e3cf44df22bd +size 10400768 diff --git a/extract/embeddings/solubility/esm2_35m/valid.npy b/extract/embeddings/solubility/esm2_35m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..b90466b6adc449d5f4106d1cc268be12c19850f1 --- /dev/null +++ b/extract/embeddings/solubility/esm2_35m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6773b0d3670a2a974850b4d2a6e26ab919e48a35295f7383c14a24174e23eb0 +size 2617088 diff --git a/extract/embeddings/solubility/esm2_3b/test.npy b/extract/embeddings/solubility/esm2_3b/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..039483d48eac078423ac5e12fec48a9ae5aa1341 --- /dev/null +++ b/extract/embeddings/solubility/esm2_3b/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93b5bc03b5707aed6122d414e9866ed184b34fecbb020462a2416ef6a0ec36a8 +size 13609088 diff --git a/extract/embeddings/solubility/esm2_3b/train.npy b/extract/embeddings/solubility/esm2_3b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..34e3103974951d3a8dadecbad65259138853383e --- /dev/null +++ b/extract/embeddings/solubility/esm2_3b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a03c6e6e7f095d29e36b6527cb94af030f4eb16c59b820ac45af12271f2c5cf7 +size 55470208 diff --git a/extract/embeddings/solubility/esm2_3b/valid.npy b/extract/embeddings/solubility/esm2_3b/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..06642117c07ad8ea6e2dd8679a2fc9b4b9f623e7 --- /dev/null +++ b/extract/embeddings/solubility/esm2_3b/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a9d4acba4e01cffa82e079db83975ee8a210cdff23537549d92ac93e024630d +size 13957248 diff --git a/extract/embeddings/solubility/esm2_650m/test.npy b/extract/embeddings/solubility/esm2_650m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..d15b768bfab88846a6da1276830c6cf815e59708 --- /dev/null +++ b/extract/embeddings/solubility/esm2_650m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:37c761da15d45db5e6ac832ba869559386eb3da5a9e6ef3724ef3c56e62d27eb +size 6804608 diff --git a/extract/embeddings/solubility/esm2_650m/train.npy b/extract/embeddings/solubility/esm2_650m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..adf1ff3a853c74c1b1ca133d277423ba5d3bdc6a --- /dev/null +++ b/extract/embeddings/solubility/esm2_650m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4daceaa9ad62d6701654ff33d60bc773ef047e9482c72b7fd5a8768b4b5c3456 +size 27735168 diff --git a/extract/embeddings/solubility/esm2_650m/valid.npy b/extract/embeddings/solubility/esm2_650m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..526d917a94466be8c6e7f166dff4801de5a26b1e --- /dev/null +++ b/extract/embeddings/solubility/esm2_650m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d851f11bdf610ddb44890787d45b40641cdec8818c91b86ec7bddd3c89a26533 +size 6978688 diff --git a/extract/embeddings/solubility/esm2_8m/test.npy b/extract/embeddings/solubility/esm2_8m/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..36e7a07119d2e759356f389992be3d24feaf686e --- /dev/null +++ b/extract/embeddings/solubility/esm2_8m/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19d094f8951779f8c15876f15698bee1fae462e0f14a8de817c62462282e1722 +size 1701248 diff --git a/extract/embeddings/solubility/esm2_8m/train.npy b/extract/embeddings/solubility/esm2_8m/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..0e3c9b46c6e059715662236e6286fb0e7b082d0b --- /dev/null +++ b/extract/embeddings/solubility/esm2_8m/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c88b9dd4cb5a9fe0518d2c370ec4c398a193233e0d895bf2e137a92d7616f97b +size 6933888 diff --git a/extract/embeddings/solubility/esm2_8m/valid.npy b/extract/embeddings/solubility/esm2_8m/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..ecc0c73e7a561ed15efcecda2aa9804563289e2b --- /dev/null +++ b/extract/embeddings/solubility/esm2_8m/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:382844a8cceefaad05f9fb140a670a06e322998370d8ef4b651e27b040688854 +size 1744768 diff --git a/extract/embeddings/solubility/esm3/test.npy b/extract/embeddings/solubility/esm3/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5de1b4ca5c291f7267f0cf3f6375484f403559ae --- /dev/null +++ b/extract/embeddings/solubility/esm3/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c25474c45d91724947bbbf10cc0ca899ea5f278b7ee97aae650a0d288892696f +size 8165504 diff --git a/extract/embeddings/solubility/esm3/train.npy b/extract/embeddings/solubility/esm3/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..804da26d19cdf65c37b15b64c4b87f5f88605f0d --- /dev/null +++ b/extract/embeddings/solubility/esm3/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ce5e644d82e4efcf1ce484e4d06a7156fb952361ec1ec7ce871a16a79d6a4a98 +size 33282176 diff --git a/extract/embeddings/solubility/esm3/valid.npy b/extract/embeddings/solubility/esm3/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..090afc012a2f0ffaa022e0aecf7410e7696c523e --- /dev/null +++ b/extract/embeddings/solubility/esm3/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f87b3043981bc280f3b535be0c2dd5bde684017d017ed8975e01b612d191767 +size 8374400 diff --git a/extract/embeddings/solubility/esm_if1/test.npy b/extract/embeddings/solubility/esm_if1/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..9edba523e4c89dd60b4d4011ca161600a8f847b5 --- /dev/null +++ b/extract/embeddings/solubility/esm_if1/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea9fa08e00698c1ea56fa7077afda979851d965cc3ed788a14721bb0ff75a40b +size 2721920 diff --git a/extract/embeddings/solubility/esm_if1/train.npy b/extract/embeddings/solubility/esm_if1/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..a171141873763b5abe0ab3648cbd002eb78bf726 --- /dev/null +++ b/extract/embeddings/solubility/esm_if1/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a2c38d1d27a6e9d214a390e1e14d0ea6b83e50d93cf8e0e5e00f12246fa8eea +size 11094144 diff --git a/extract/embeddings/solubility/esm_if1/valid.npy b/extract/embeddings/solubility/esm_if1/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..913111a1fe73a6d3d7ffd5fb70cf2d18cd078416 --- /dev/null +++ b/extract/embeddings/solubility/esm_if1/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:36311022567c97d3459f76fc3baf009dee102123dd65f49b1b7d14c82d45a836 +size 2791552 diff --git a/extract/embeddings/solubility/foldseek_3di/test.npy b/extract/embeddings/solubility/foldseek_3di/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..413e82d3c239b33912660e901981ee1b4b93d621 --- /dev/null +++ b/extract/embeddings/solubility/foldseek_3di/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:13e9d6b34c7945fe74579fcdb44133c316ae5a1d4b445bcb03dbae1658ed6518 +size 106448 diff --git a/extract/embeddings/solubility/foldseek_3di/train.npy b/extract/embeddings/solubility/foldseek_3di/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..dedbe04c40fe412727087ba1419fac2d2c5c876e --- /dev/null +++ b/extract/embeddings/solubility/foldseek_3di/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67d7ec05b3c6a1ce1102246ac280c08d518cb26a4d6bee1ffb3172e752ef9dad +size 433488 diff --git a/extract/embeddings/solubility/foldseek_3di/valid.npy b/extract/embeddings/solubility/foldseek_3di/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..81ac52eeec253f1ef3806ccc9bb031e05475e9bd --- /dev/null +++ b/extract/embeddings/solubility/foldseek_3di/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a578c17c66e29d638cd135814a245d411d188115a629aa64a17fbab3fb7038c6 +size 109168 diff --git a/extract/embeddings/solubility/foldvision/test.npy b/extract/embeddings/solubility/foldvision/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..39b7619cea307779263aaff81b2257188f3d1d9c --- /dev/null +++ b/extract/embeddings/solubility/foldvision/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2b18957914b009009056e22ab7430a8908142432cee6a9250899ab1e60263c7e +size 5443712 diff --git a/extract/embeddings/solubility/foldvision/train.npy b/extract/embeddings/solubility/foldvision/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..bca3de4b201ecfcc5645501e6791cdfaaa77ffa0 --- /dev/null +++ b/extract/embeddings/solubility/foldvision/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56a11aa774ac3c0ef2d2379c1c36942b6a0aa57bcfa879c9f5c2a8450d334772 +size 22188160 diff --git a/extract/embeddings/solubility/foldvision/valid.npy b/extract/embeddings/solubility/foldvision/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..10e0890ba205f84298a1026495ee30384a1226c3 --- /dev/null +++ b/extract/embeddings/solubility/foldvision/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bcca8536d4afaa04ca7f6e793a534fb2da4e31fffb566f5b3f3a13d5c44703a5 +size 5582976 diff --git a/extract/embeddings/solubility/gcpnet_pretrained/test.npy b/extract/embeddings/solubility/gcpnet_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..d016c1e65f2e8b1ebd32fd518b6dc43879e1b0d5 --- /dev/null +++ b/extract/embeddings/solubility/gcpnet_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:96aac8ec6175cd7195d9f8661884b1730e3ac5d59544fd4eeaf5e2ecc493bb2b +size 616784 diff --git a/extract/embeddings/solubility/gcpnet_pretrained/train.npy b/extract/embeddings/solubility/gcpnet_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..d0346e47c352105bb63859f49f3ed21ab6c27b47 --- /dev/null +++ b/extract/embeddings/solubility/gcpnet_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b818583e1ec1c057372212892f05ce3f6f5e0f0a59fba58a5f6839167caa4e0 +size 2513616 diff --git a/extract/embeddings/solubility/gcpnet_pretrained/valid.npy b/extract/embeddings/solubility/gcpnet_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..60d2060af83af5e7004d263086e411d331e3cfbf --- /dev/null +++ b/extract/embeddings/solubility/gcpnet_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f7e2672cd62b155967aff29d479304791d88d64d5d0e34b5bd0ec908d747c96 +size 632560 diff --git a/extract/embeddings/solubility/gcpnet_random/test.npy b/extract/embeddings/solubility/gcpnet_random/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..f64e96220b619de94256ee33916f571e4ce45935 --- /dev/null +++ b/extract/embeddings/solubility/gcpnet_random/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:33dd53b78738fe396b3281a61817f39d1b31a0e9114bf1b8a131cace9dc7b992 +size 616784 diff --git a/extract/embeddings/solubility/gcpnet_random/train.npy b/extract/embeddings/solubility/gcpnet_random/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..633fd9db312aa065e9a6a3ee14130c4a620bb579 --- /dev/null +++ b/extract/embeddings/solubility/gcpnet_random/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a2237d1d7d7599391907afb8231a0703264d617e9c33254c31753455073aa8e3 +size 2513616 diff --git a/extract/embeddings/solubility/gcpnet_random/valid.npy b/extract/embeddings/solubility/gcpnet_random/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..657a12a2f41fe8cb3017f2d1733ecd6da100c7b1 --- /dev/null +++ b/extract/embeddings/solubility/gcpnet_random/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9bdc24cf969dc4e5fb70eb2a8aa09bbed59c353052ffb45df3f6486dcaa9db92 +size 632560 diff --git a/extract/embeddings/solubility/gearnet/test.npy b/extract/embeddings/solubility/gearnet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..a8a6392908ef3e105e7c9a04c6ccc1d27d267f6b --- /dev/null +++ b/extract/embeddings/solubility/gearnet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51ee10c81c18605f82bf26736f18c206252b5200d3dda564ea9f419f0f165677 +size 2721920 diff --git a/extract/embeddings/solubility/gearnet/train.npy b/extract/embeddings/solubility/gearnet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..df3eb0f27673346f588d893aa527e38eac0e2a8d --- /dev/null +++ b/extract/embeddings/solubility/gearnet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4355e48fd7ef61fdb0016076531c08273ad9eca27d7bc565ca42d38f1881a12c +size 11094144 diff --git a/extract/embeddings/solubility/gearnet/valid.npy b/extract/embeddings/solubility/gearnet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad7fe08c54ab0a049f579499200ddfd2ad39fc9f --- /dev/null +++ b/extract/embeddings/solubility/gearnet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0c0073d96321c5918665b9c49bf7e9e93728ce9d93cd4c4eab1ff1ee7534408f +size 2791552 diff --git a/extract/embeddings/solubility/gearnet_pretrained/test.npy b/extract/embeddings/solubility/gearnet_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..6af1a36f0764195685c35ae516725cec9d881c78 --- /dev/null +++ b/extract/embeddings/solubility/gearnet_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:174584310a766cc6cb5d73106218d6d2c440420856ee4e135cf3517da5705a27 +size 2721920 diff --git a/extract/embeddings/solubility/gearnet_pretrained/train.npy b/extract/embeddings/solubility/gearnet_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..42dc88086a1d3b28a366c0fee3a9bd05ce0d22b7 --- /dev/null +++ b/extract/embeddings/solubility/gearnet_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0df59dcaa63219d1ad4e46edf9328944e0dbce49631ae05d0bd80f19fefc8ccd +size 11094144 diff --git a/extract/embeddings/solubility/gearnet_pretrained/valid.npy b/extract/embeddings/solubility/gearnet_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..646d2c8cd7168c7abdac7293b810dc91f11c709a --- /dev/null +++ b/extract/embeddings/solubility/gearnet_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3185459373cbfb7b14478e1372390ed3758e0f1b09e37275a9ca445f2d53eb97 +size 2791552 diff --git a/extract/embeddings/solubility/gvp/test.npy b/extract/embeddings/solubility/gvp/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..b3a12257fe24f1eec1e71aeac2ff14636ec575cf --- /dev/null +++ b/extract/embeddings/solubility/gvp/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:40e8863c390aa1f7c7a41c4d7af08d92237637b583d1521fd9e511e6448b4c3f +size 616784 diff --git a/extract/embeddings/solubility/gvp/train.npy b/extract/embeddings/solubility/gvp/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..2dde80e1f19c6b8d141d7f593faba9b400120fc1 --- /dev/null +++ b/extract/embeddings/solubility/gvp/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5e80cd83306a4e55fe97afdc9c7eb6f9ab7855b1cd1b46741947b3292f8d255e +size 2513616 diff --git a/extract/embeddings/solubility/gvp/valid.npy b/extract/embeddings/solubility/gvp/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7fe4b57e25c552fcaccd45bf43371b2cea684767 --- /dev/null +++ b/extract/embeddings/solubility/gvp/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e2e3adb5de0c3a351d091b7a62c977f9923abd0d7cc2bf7693f97df7d0d71f4f +size 632560 diff --git a/extract/embeddings/solubility/ipa/test.npy b/extract/embeddings/solubility/ipa/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..9ce8a09e3fb565712be1958ffdbc4d08df030ae5 --- /dev/null +++ b/extract/embeddings/solubility/ipa/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c98ef0b5fa6511383873e659b10cbf2b3437bcdda7be122e4d4c8bc3bf78ab27 +size 680576 diff --git a/extract/embeddings/solubility/ipa/train.npy b/extract/embeddings/solubility/ipa/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..b46c22dba49a4451e217cc431ceade12b16ad111 --- /dev/null +++ b/extract/embeddings/solubility/ipa/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:52e603da3b8ce3b62dfe4c9b698e6e050af47a7dd23e9a2eb7587ae172df7d31 +size 2773632 diff --git a/extract/embeddings/solubility/ipa/valid.npy b/extract/embeddings/solubility/ipa/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..d6566d28bb7607f750d540e26bb33089f5dfdbeb --- /dev/null +++ b/extract/embeddings/solubility/ipa/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f8fc4503c8f84f153413032b851d6457e2a7b724280007426e419ad6fc4ff56b +size 697984 diff --git a/extract/embeddings/solubility/ipa_pretrained/test.npy b/extract/embeddings/solubility/ipa_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..b9a305fcdf33ea067234a36b5780491c872d3531 --- /dev/null +++ b/extract/embeddings/solubility/ipa_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2c4a32816480b00bc52c9a2dde3b1ac313760128fed2370ba29e87dc3cf7020e +size 680576 diff --git a/extract/embeddings/solubility/ipa_pretrained/train.npy b/extract/embeddings/solubility/ipa_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..fd538796c79e112a4b674f920737ee34146179b3 --- /dev/null +++ b/extract/embeddings/solubility/ipa_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:34fb4d11cf83668e69639dc1a888364b7b9eed0d31a8db71e0c8ef81eccb5559 +size 2773632 diff --git a/extract/embeddings/solubility/ipa_pretrained/valid.npy b/extract/embeddings/solubility/ipa_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..598a1dbd9e383d5612098ab155cff05feec209c5 --- /dev/null +++ b/extract/embeddings/solubility/ipa_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb8d882ea018992649b7d50e838f1333c36e8c4e4a2d221de87ac2c34e9a5e86 +size 697984 diff --git a/extract/embeddings/solubility/mace/test.npy b/extract/embeddings/solubility/mace/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..c25cce84c6b59f1e7221510e819175d620e9a30f --- /dev/null +++ b/extract/embeddings/solubility/mace/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:124e0ce380bfdf100d6ad5166b9c7d8230c0c3c394c2aba6ea300feeb0243e5a +size 680576 diff --git a/extract/embeddings/solubility/mace/train.npy b/extract/embeddings/solubility/mace/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..65921befd7a5663911380bdd27f392d2a43a6511 --- /dev/null +++ b/extract/embeddings/solubility/mace/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef27eb6802773c72798b4bdf7329ddb0984fdc2f2c7331ceceb7bc4beffd75ea +size 2773632 diff --git a/extract/embeddings/solubility/mace/valid.npy b/extract/embeddings/solubility/mace/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..26873a8aaa39336f4004c8d353f04618aa34de67 --- /dev/null +++ b/extract/embeddings/solubility/mace/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e1a9e273454fa911d976e3d68811648dbaebc47df4782990d86dde7b5f0d9c89 +size 697984 diff --git a/extract/embeddings/solubility/pottsmpnn/test.npy b/extract/embeddings/solubility/pottsmpnn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..b29edf56acc98178c4d74c3181bc086441bf39bf --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7c93315525fed62ab0b3541217cce3e6415b2802658352eb2c672009e6d2bca2 +size 680576 diff --git a/extract/embeddings/solubility/pottsmpnn/train.npy b/extract/embeddings/solubility/pottsmpnn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..5c4b04f873ebda5a8ce696f34512f60ea48e0051 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eeb51af083b5d44248d4bb1b6435fa2e36063f6e1b40a4de50a828e568b0d15f +size 2773632 diff --git a/extract/embeddings/solubility/pottsmpnn/valid.npy b/extract/embeddings/solubility/pottsmpnn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..14c233da48656071fb033356780aabc44ea092e7 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41f115fbcb8d789a04ef5451592adc78298111311a2ea6e64f5d895b0cce1e70 +size 697984 diff --git a/extract/embeddings/solubility/pottsmpnn_ft/test.npy b/extract/embeddings/solubility/pottsmpnn_ft/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..46df35c89db32e16f361c33490d65ac9878d9b01 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_ft/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:62ddb986c10c25d400b9a34504eda3fd7b7edb08a5b1920c985ef24138fe52f8 +size 680576 diff --git a/extract/embeddings/solubility/pottsmpnn_ft/train.npy b/extract/embeddings/solubility/pottsmpnn_ft/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..4124fe5fc7dbbbb5e40ac90b624861e41bc1e900 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_ft/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3717879ec55ca0077900170ada93077d92ee68196c058e0673a12130e67bc00f +size 2773632 diff --git a/extract/embeddings/solubility/pottsmpnn_ft/valid.npy b/extract/embeddings/solubility/pottsmpnn_ft/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..fc07bca79a8ce2cdc46f4643e84dbdaa3cfd1ef4 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_ft/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a0454e7868e6b53afbdb8348239d5eab7d98b8eff2f78bde29b55e8342dca0d +size 697984 diff --git a/extract/embeddings/solubility/pottsmpnn_pretrained/test.npy b/extract/embeddings/solubility/pottsmpnn_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..e94cf3321e4aeaf05fbc2700db5090a701a18751 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6c0b0c550d8a7f82eaa26bb310fbf6da7025be8791d5326f442b984169f1b18d +size 680576 diff --git a/extract/embeddings/solubility/pottsmpnn_pretrained/train.npy b/extract/embeddings/solubility/pottsmpnn_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..d53718b8758fd993361c503c889458ac31c4f0b7 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:86ebd92636a9b2e84969d47c83ca9897b2ea8d1acec2f71b0421279b446c42cb +size 2773632 diff --git a/extract/embeddings/solubility/pottsmpnn_pretrained/valid.npy b/extract/embeddings/solubility/pottsmpnn_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..a5661f57e61178e887685512f2fbf6aad3a5a251 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0aaedd80712ca89c58f2fd3797574c338ba56d6257bd3e96086ff91fa2e4beb0 +size 697984 diff --git a/extract/embeddings/solubility/pottsmpnn_soluble/test.npy b/extract/embeddings/solubility/pottsmpnn_soluble/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5bbd5c1625c0fe67cffc80d259fa212107df3a80 --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_soluble/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bb12c042786f92f1ce29a88c89eb1e4419f34dc61581f57edc7b5d66ff38a4eb +size 680576 diff --git a/extract/embeddings/solubility/pottsmpnn_soluble/train.npy b/extract/embeddings/solubility/pottsmpnn_soluble/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..8e4b2fd30d5c11f726b3fc4d46ba083f1190f72c --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_soluble/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ada8865db840f6ff598a951a2622506a7d1532fac6400d58c47f3aa28edee323 +size 2773632 diff --git a/extract/embeddings/solubility/pottsmpnn_soluble/valid.npy b/extract/embeddings/solubility/pottsmpnn_soluble/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..0defdda87b848950203c0ed32e1386aca31781fe --- /dev/null +++ b/extract/embeddings/solubility/pottsmpnn_soluble/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d10da20eedc6d6bc9f91689429afd7baba28a34bdadc78ffdd9123f87cc1d1eb +size 697984 diff --git a/extract/embeddings/solubility/prostt5/test.npy b/extract/embeddings/solubility/prostt5/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..0291e430264862ec192d3d5703e372f863e6847d --- /dev/null +++ b/extract/embeddings/solubility/prostt5/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3d98f922549a712a551483a5b3490e54a1589e5b26e9140509c289372c9543b8 +size 5443712 diff --git a/extract/embeddings/solubility/prostt5/train.npy b/extract/embeddings/solubility/prostt5/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..df5b0d55eb6b86c1f2d1709c7711ef5a688f65f3 --- /dev/null +++ b/extract/embeddings/solubility/prostt5/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:59c010bc7b99cdb5f8f86562fc98ab93953b317f24c59818f7aa357dce76fadf +size 22188160 diff --git a/extract/embeddings/solubility/prostt5/valid.npy b/extract/embeddings/solubility/prostt5/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..33eda4b77fdf2bf60fffaef106667d0e6647b9e7 --- /dev/null +++ b/extract/embeddings/solubility/prostt5/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:79d6aa1cb37401847b9f270ef8583f8bfb7c69e17b1188df5eb9c5a3f6835f84 +size 5582976 diff --git a/extract/embeddings/solubility/protbert_bfd/test.npy b/extract/embeddings/solubility/protbert_bfd/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..704a4e84c2d90a2baf9a5a2c8d31a0a6c6bc4ba0 --- /dev/null +++ b/extract/embeddings/solubility/protbert_bfd/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7dacfd25ee0c7446ca57259b4ab779057df2e29427fd7e35d60466e851dd6cab +size 5443712 diff --git a/extract/embeddings/solubility/protbert_bfd/train.npy b/extract/embeddings/solubility/protbert_bfd/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..960e252d37666717852e791d47ea0d525b6d7425 --- /dev/null +++ b/extract/embeddings/solubility/protbert_bfd/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:27fed3421e03490489ad112907b2ade87e4d121d8cef9e162a7a7c650cb2f6e5 +size 22188160 diff --git a/extract/embeddings/solubility/protbert_bfd/valid.npy b/extract/embeddings/solubility/protbert_bfd/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..e2292f884cc4653bb37ae9f88ec0731f08bd1cd7 --- /dev/null +++ b/extract/embeddings/solubility/protbert_bfd/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2df1c9186194ac21d300a73ad52cf74523fde54fcddad5511f9a3bfa4d0e12b9 +size 5582976 diff --git a/extract/embeddings/solubility/proteinmpnn/test.npy b/extract/embeddings/solubility/proteinmpnn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..c63b5e200a996c2870c67dbf403a04cf023fff36 --- /dev/null +++ b/extract/embeddings/solubility/proteinmpnn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6366395a6a2598ac29f78bef4e448e9470a3c8f46c81a18bb0beb6eba1715697 +size 680576 diff --git a/extract/embeddings/solubility/proteinmpnn/train.npy b/extract/embeddings/solubility/proteinmpnn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..ec5a78d80633624f1f41e1b6c7fcf5a98459667f --- /dev/null +++ b/extract/embeddings/solubility/proteinmpnn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7af0e03a59a104bb6584fb09215839df8526de90b43f04168fdfc6c80cd8818 +size 2773632 diff --git a/extract/embeddings/solubility/proteinmpnn/valid.npy b/extract/embeddings/solubility/proteinmpnn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..66134509c33b494111b3c484019bed50097d7b84 --- /dev/null +++ b/extract/embeddings/solubility/proteinmpnn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9fd835b761dcb585706a0a765cadde2174fb08c3d559649cff971cd18c4dd35 +size 697984 diff --git a/extract/embeddings/solubility/prottrans_t5_xl_u50/test.npy b/extract/embeddings/solubility/prottrans_t5_xl_u50/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..9602ca67eac33dd5569616e646f537996e8ad96e --- /dev/null +++ b/extract/embeddings/solubility/prottrans_t5_xl_u50/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51aec658a64ea8c6c53b9096700b992bf56d74602271df3707fec2b851631d8d +size 5443712 diff --git a/extract/embeddings/solubility/prottrans_t5_xl_u50/train.npy b/extract/embeddings/solubility/prottrans_t5_xl_u50/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..3e0257f721a0e4ac69956732aad9515925447162 --- /dev/null +++ b/extract/embeddings/solubility/prottrans_t5_xl_u50/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1874f7feae19d7fd588df8d47e0972a24308a85c7af5191079e91c3db2afaecb +size 22188160 diff --git a/extract/embeddings/solubility/prottrans_t5_xl_u50/valid.npy b/extract/embeddings/solubility/prottrans_t5_xl_u50/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..d8ed779b3da545a46c4026e2655567b74ec04c2c --- /dev/null +++ b/extract/embeddings/solubility/prottrans_t5_xl_u50/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:936ea10b3fb773990755415217e1432435fdfddb6f8a8cf3f27fb8fe10bf2eeb +size 5582976 diff --git a/extract/embeddings/solubility/ref_composition/test.npy b/extract/embeddings/solubility/ref_composition/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..38b7b222c53da7257b7afff2082993ced80b4f34 --- /dev/null +++ b/extract/embeddings/solubility/ref_composition/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f40f54af5d7b6bcab19bac02671b46e69f5a6a68c72442195647fd9ee2d8aebf +size 122396 diff --git a/extract/embeddings/solubility/ref_composition/train.npy b/extract/embeddings/solubility/ref_composition/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..62ff71e447a93676286eeb4ceef3d455c961e06f --- /dev/null +++ b/extract/embeddings/solubility/ref_composition/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4af2d6afdbd193e8a3e27b1c3dea51a76d0140f9f921bcb96b0b94162ad5af69 +size 498492 diff --git a/extract/embeddings/solubility/ref_composition/valid.npy b/extract/embeddings/solubility/ref_composition/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..04132e3f53b67a94046aa23cdf5f779b074b3cce --- /dev/null +++ b/extract/embeddings/solubility/ref_composition/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:daffeef1f87f59667a2ec9a70c7ea6ada9069d051a00254f8cc0b6b3cd41543f +size 125524 diff --git a/extract/embeddings/solubility/saprot/test.npy b/extract/embeddings/solubility/saprot/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..a9fbb56ba3b9268fab406cca17c0ea33ad1d83bf --- /dev/null +++ b/extract/embeddings/solubility/saprot/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:25878d3044fa7c7e739641ef23e2cb7e053d2faf03acc77a9be515e0f7a4fbdf +size 6804608 diff --git a/extract/embeddings/solubility/saprot/train.npy b/extract/embeddings/solubility/saprot/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..b2ebdd6c1cc61cbbbb5ec4e1d1251ce73f45bb9d --- /dev/null +++ b/extract/embeddings/solubility/saprot/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ed43f469f8a4d0dbd968b3f2f79d81ed9791fb0653ffd4ddb5b716850b766bc1 +size 27735168 diff --git a/extract/embeddings/solubility/saprot/valid.npy b/extract/embeddings/solubility/saprot/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7b22d008efbbde66237d4b423660ff2dc0deecf2 --- /dev/null +++ b/extract/embeddings/solubility/saprot/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:54c597cfd0ff143546ad72939b36367cc7a367311b592b49847e3d630c199865 +size 6978688 diff --git a/extract/embeddings/solubility/schnet/test.npy b/extract/embeddings/solubility/schnet/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..705f2e4f8d63e8d0ce0b5ae01bf47833fbb902c5 --- /dev/null +++ b/extract/embeddings/solubility/schnet/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19dae121eeb96c55e1ab16327fd2bca0bac0704cd81063f428e93c036cb36e1b +size 680576 diff --git a/extract/embeddings/solubility/schnet/train.npy b/extract/embeddings/solubility/schnet/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f295f392316493637157a1c1c807bd8ba26cf6de --- /dev/null +++ b/extract/embeddings/solubility/schnet/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a3c0d5340f13280ed8cf7e36c8c858e3e5cacebaba12a630c87caa31d043c40d +size 2773632 diff --git a/extract/embeddings/solubility/schnet/valid.npy b/extract/embeddings/solubility/schnet/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..b12ce4b7355d79c3aae42dd9cae8cbb7120be997 --- /dev/null +++ b/extract/embeddings/solubility/schnet/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b6d24d57994eadca4efc12445871e98852a82eb30f2cda66b59ada2e2ffd76f +size 697984 diff --git a/extract/embeddings/solubility/tfn/test.npy b/extract/embeddings/solubility/tfn/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..d9a26bc8fb56cd6ce3833da9ddd66de88d85a829 --- /dev/null +++ b/extract/embeddings/solubility/tfn/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1334449e2e77a368ded61a81c129ac1b8f3f6bb16fefa7e40bd57e7d1f0b9a72 +size 680576 diff --git a/extract/embeddings/solubility/tfn/train.npy b/extract/embeddings/solubility/tfn/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..c66438038795f8582b186818fe8681af5a79c29c --- /dev/null +++ b/extract/embeddings/solubility/tfn/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f5ddac298465f6a5a2d26eb6881b16f40e26ecca4f23712e1f874ef01648379d +size 2773632 diff --git a/extract/embeddings/solubility/tfn/valid.npy b/extract/embeddings/solubility/tfn/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..59a5dfb344b4e6366cbf2ac6ef74a1022acefab2 --- /dev/null +++ b/extract/embeddings/solubility/tfn/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a733fa69edec75fe753dd93841b3fcb09c2fab656bc97ca97dfc51e7afda4766 +size 697984 diff --git a/extract/embeddings/solubility/tfn_pretrained/test.npy b/extract/embeddings/solubility/tfn_pretrained/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..8495f0281fe9e57b1afa21b0cf551e5fe6fc908a --- /dev/null +++ b/extract/embeddings/solubility/tfn_pretrained/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:170f79644a303713f7f9104096da543cb61c922fe69453099088c6afa6502ac7 +size 680576 diff --git a/extract/embeddings/solubility/tfn_pretrained/train.npy b/extract/embeddings/solubility/tfn_pretrained/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..0373b49431f946a8055c87969aa6f12762e0063e --- /dev/null +++ b/extract/embeddings/solubility/tfn_pretrained/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5fd80ce61d41e4c6a409ce5f230a27c43c29870be81321ab0f02120322a40a18 +size 2773632 diff --git a/extract/embeddings/solubility/tfn_pretrained/valid.npy b/extract/embeddings/solubility/tfn_pretrained/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..2e00cc6b14c8d8cab07b65de939cb765e6125c8b --- /dev/null +++ b/extract/embeddings/solubility/tfn_pretrained/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ba54ad09e1606e04f777740f0f4d6fd065911699383835cd3c27123e056da1a8 +size 697984 diff --git a/extract/embeddings/subcellular_localization/esm2_3b/train.npy b/extract/embeddings/subcellular_localization/esm2_3b/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..10a5f5c19ea3152417e7b05d1ff1a509226c0801 --- /dev/null +++ b/extract/embeddings/subcellular_localization/esm2_3b/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5bd28c88de75b054fe04046376ffb137139d003ffdbb8f9f64bf260144ad176d +size 61440128 diff --git a/extract/embeddings/subcellular_localization/gvp/test.npy b/extract/embeddings/subcellular_localization/gvp/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..4c32e63ac338394db447a9270b2afb6903dab904 --- /dev/null +++ b/extract/embeddings/subcellular_localization/gvp/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:451ccffc1e20189c03b8bd8a0a5d394e3d94d39f8767002c3025f4202a44d67f +size 1147600 diff --git a/extract/embeddings/subcellular_localization/gvp/train.npy b/extract/embeddings/subcellular_localization/gvp/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..067adac1b4e675a5cae65a464dc061dbd46809b7 --- /dev/null +++ b/extract/embeddings/subcellular_localization/gvp/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ba8fe873eb036c1c785565b1133416edab663882f2bb6720dfc1c5f704bc4b1 +size 2784128 diff --git a/extract/embeddings/subcellular_localization/gvp/valid.npy b/extract/embeddings/subcellular_localization/gvp/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7da1c5f090d72c70f663d92dff7e3849b913d346 --- /dev/null +++ b/extract/embeddings/subcellular_localization/gvp/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:894e0acd0398dc742b95da49b5fefe480ab468014dcc4d31b1e20e6c6c6ae117 +size 696128 diff --git a/extract/embeddings/subcellular_localization/mace/test.npy b/extract/embeddings/subcellular_localization/mace/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..ee9fc0b099d4fec871e85b3d0d6393792b07650c --- /dev/null +++ b/extract/embeddings/subcellular_localization/mace/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eedb57878469876b73a48a25757e5ecfb7beadd23eeb535ef68fbde14ef2c2ed +size 1266304 diff --git a/extract/embeddings/subcellular_localization/mace/train.npy b/extract/embeddings/subcellular_localization/mace/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..409fa06eb8e3c9a1a82a96a47d2503afb7beeb68 --- /dev/null +++ b/extract/embeddings/subcellular_localization/mace/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ca0808279c5aa82fef46952b0ad667910b0171cef2c8bf5cfbcdc278076ba63 +size 3072128 diff --git a/extract/embeddings/subcellular_localization/mace/valid.npy b/extract/embeddings/subcellular_localization/mace/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..7518c0afb1c9ad9339001a4072b53dbdac4373f9 --- /dev/null +++ b/extract/embeddings/subcellular_localization/mace/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:34d8464edbf3e9b6a2df35c1461e1de5685465413d88a82522a6165d5b21f60a +size 768128 diff --git a/extract/embeddings/subcellular_localization/pottsmpnn_ft/test.npy b/extract/embeddings/subcellular_localization/pottsmpnn_ft/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..d1bacf28e9d749a3dfbb8db7f5f87adc93486c65 --- /dev/null +++ b/extract/embeddings/subcellular_localization/pottsmpnn_ft/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:656567e2fe8c844c2088f2d350de037d44da97de703e4cd1d0b12a8413aa5b9f +size 1266304 diff --git a/extract/embeddings/subcellular_localization/pottsmpnn_ft/train.npy b/extract/embeddings/subcellular_localization/pottsmpnn_ft/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..f23e63b9f87c2869d59ec1954b4939bd15e1103b --- /dev/null +++ b/extract/embeddings/subcellular_localization/pottsmpnn_ft/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:746714cc5416bd5881de68774abdd1e89841f71aae13bf1c04136e0fb3c9f520 +size 3072128 diff --git a/extract/embeddings/subcellular_localization/pottsmpnn_ft/valid.npy b/extract/embeddings/subcellular_localization/pottsmpnn_ft/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..fa72293e55e981f5755df866f15ce98a7f73bb42 --- /dev/null +++ b/extract/embeddings/subcellular_localization/pottsmpnn_ft/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:516623772e148317a97e52ab6ab1e7ab222bfbe67ded59e0f0abe50e16a53d7c +size 768128 diff --git a/extract/embeddings/subcellular_localization/pottsmpnn_soluble/test.npy b/extract/embeddings/subcellular_localization/pottsmpnn_soluble/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..5bc52e7eb416f04c4c6bcc93ab1d4da62f7eda4a --- /dev/null +++ b/extract/embeddings/subcellular_localization/pottsmpnn_soluble/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e46ab7b96d34f644194959e0171203a0fa0c04503d7be8578540d73db1b1aa1f +size 1266304 diff --git a/extract/embeddings/subcellular_localization/pottsmpnn_soluble/valid.npy b/extract/embeddings/subcellular_localization/pottsmpnn_soluble/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..bc73d190028e06e8f49f4071847da9985504e122 --- /dev/null +++ b/extract/embeddings/subcellular_localization/pottsmpnn_soluble/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9f6d75cfe0a45d20dfd1d0446b6b1e4fe147bf7a889e58005f43f2b2d80006d5 +size 768128 diff --git a/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/test.npy b/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/test.npy new file mode 100644 index 0000000000000000000000000000000000000000..4a08e86534b9ce530b2abd90749008a5e0197f44 --- /dev/null +++ b/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7bee112339ad7974ee68f85992a6e3d15bf6a207584a083984d15e4735d39165 +size 10129536 diff --git a/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/train.npy b/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/train.npy new file mode 100644 index 0000000000000000000000000000000000000000..17ae4ba4888f7bd60dc7399909567c33f0d55975 --- /dev/null +++ b/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3f69aefd1e791ef41a046f84f0d9e525fa97646537e76df307af5ad154d91f1a +size 24576128 diff --git a/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/valid.npy b/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/valid.npy new file mode 100644 index 0000000000000000000000000000000000000000..cec9d08b692fb807ddecb7a3f1371b406cd3369c --- /dev/null +++ b/extract/embeddings/subcellular_localization/prottrans_t5_xl_u50/valid.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b2113f329db58787ceb4039616d6a73db1fb7554dbd9152c42d2265f425169a1 +size 6144128 diff --git a/extract/manifest/ec_classification.csv b/extract/manifest/ec_classification.csv new file mode 100644 index 0000000000000000000000000000000000000000..93eabe8de5dce44dde3a90a7625205d7b1919727 --- /dev/null +++ b/extract/manifest/ec_classification.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8108b2ab98da6323d311ddc701ed6f9daea795f551205d9ea6d4943df0402ae1 +size 13503579 diff --git a/extract/manifest/fluorescence.csv b/extract/manifest/fluorescence.csv new file mode 100644 index 0000000000000000000000000000000000000000..180e8e1e788d5fcb260d6afc2a321bf5f4bd0218 --- /dev/null +++ b/extract/manifest/fluorescence.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6342460c495ed03192b696965dddbe895c408085c2bc9120dd7b9097fd318f1d +size 20451541 diff --git a/extract/manifest/go_bp.csv b/extract/manifest/go_bp.csv new file mode 100644 index 0000000000000000000000000000000000000000..bbf754ac62d1f6483c65bbc1c7e1ef2531b000f4 --- /dev/null +++ b/extract/manifest/go_bp.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:afa96c729222771a910a6af150f13032ee8ddf79e9e4e94fac4be8ca004c248c +size 13268240 diff --git a/extract/manifest/go_mf.csv b/extract/manifest/go_mf.csv new file mode 100644 index 0000000000000000000000000000000000000000..d9b14d5e2d409ffa127e902046af08c9111119f9 --- /dev/null +++ b/extract/manifest/go_mf.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:254be7c8c95f3bd29aa76466bd102dc097d6e861bbbdfab20c2592362dde3a9a +size 11917000 diff --git a/extract/manifest/membrane_soluble.csv b/extract/manifest/membrane_soluble.csv new file mode 100644 index 0000000000000000000000000000000000000000..17a5b7e9b0f96809bb67faf7c6fda9c08238909e --- /dev/null +++ b/extract/manifest/membrane_soluble.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:35c9999f4b21bbd6c9292932671d7511f0b2aa1d70f64d02019ede99bd259228 +size 12428032 diff --git a/extract/manifest/stability.csv b/extract/manifest/stability.csv new file mode 100644 index 0000000000000000000000000000000000000000..a1fa0c6b980a169a3b5da0baed3884e6b4a3267a --- /dev/null +++ b/extract/manifest/stability.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:15339309254280894dd792325c353220052c94a1e8f3411f3e5d98781e7c2fc9 +size 14670997 diff --git a/extract/manifest/subcellular_localization.csv b/extract/manifest/subcellular_localization.csv new file mode 100644 index 0000000000000000000000000000000000000000..61f602b75ba41850a0620c9719ef52e82c7dce76 --- /dev/null +++ b/extract/manifest/subcellular_localization.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef91bde5b9121e3a1a00008d6fe591f21d6057a2930ee6a09fa68c084d4835f7 +size 12382403 diff --git a/masif_site/embeddings/ankh_base/pooled_fp32.npy b/masif_site/embeddings/ankh_base/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..529902cdc2a8dedd55f92680740c1019421ed73e --- /dev/null +++ b/masif_site/embeddings/ankh_base/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87a229c85cba2f8bfa6cf3378b2c92dd6aa8c848c1e944ddd591ff5820129e3d +size 10220672 diff --git a/masif_site/embeddings/ankh_base/residue_fp16.npy b/masif_site/embeddings/ankh_base/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..42e6552942cbd63be7da34d8277378d64000e34e --- /dev/null +++ b/masif_site/embeddings/ankh_base/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a40525ff6f56fa91eba122e33e4ac6b3ad123cefee867cd05cb7252d2661a64a +size 994302080 diff --git a/masif_site/embeddings/cdconv/pooled_fp32.npy b/masif_site/embeddings/cdconv/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..d0b3b59fab67201516b8dcd234f97d45e633c6d7 --- /dev/null +++ b/masif_site/embeddings/cdconv/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2022a82f205df028dcd3df6926353a9b4d5b681fa897e3d14622cdca21811df5 +size 3406976 diff --git a/masif_site/embeddings/cdconv/residue_fp16.npy b/masif_site/embeddings/cdconv/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..1936389edfaf80adb78bcfaf0976ebba255e03c0 --- /dev/null +++ b/masif_site/embeddings/cdconv/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6c8a183eb74a8eec6df2ec6df2bb726408501e088a8b9ba7f9abc5a201920fc9 +size 331434112 diff --git a/masif_site/embeddings/dimenet/pooled_fp32.npy b/masif_site/embeddings/dimenet/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..c48a072bc20a9453baabd3fb5f458f0fb21a63d6 --- /dev/null +++ b/masif_site/embeddings/dimenet/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f84d7fa6ef5152750ce0adad70638a650319fd0c0b19a95d9a27d3828277c9d +size 1703552 diff --git a/masif_site/embeddings/dimenet/residue_fp16.npy b/masif_site/embeddings/dimenet/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..99db5912ed7512724ac9ef9ac7b4f55195c9e9b4 --- /dev/null +++ b/masif_site/embeddings/dimenet/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e2ae8aa0151b2a7943291a0dbd65513ef4965d1df2b77859dd67319365c893d +size 165717120 diff --git a/masif_site/embeddings/esm1b/pooled_fp32.npy b/masif_site/embeddings/esm1b/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..d9342fcd56f96537601159a96eae1780e91cad3d --- /dev/null +++ b/masif_site/embeddings/esm1b/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:72c09a70776ffd13e5b7c34183e19a93d9c447ebf6682e0722eaa3aa24b53754 +size 17034368 diff --git a/masif_site/embeddings/esm1b/residue_fp16.npy b/masif_site/embeddings/esm1b/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..03dc2103044ab2687953c89f221f4647d33effbf --- /dev/null +++ b/masif_site/embeddings/esm1b/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4a273511f9e961799d90a9f66fa885045996e168c3923ee9c30b853d761e353b +size 1657170048 diff --git a/masif_site/embeddings/esm2_150m/pooled_fp32.npy b/masif_site/embeddings/esm2_150m/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0e9cc8fea6e8ea405b0396715f4a75fe5ee56e1 --- /dev/null +++ b/masif_site/embeddings/esm2_150m/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5f4f7b4262f39cb55c2dc42d80cbbc7a6a112e1d10473c26fdf45f9a16f0d19b +size 8517248 diff --git a/masif_site/embeddings/esm2_150m/residue_fp16.npy b/masif_site/embeddings/esm2_150m/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..92d2108483b101cdf95389095095c4dcee72c386 --- /dev/null +++ b/masif_site/embeddings/esm2_150m/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6ae90a19a208873357bafb04b3fa1b470f75ef5a1b2e812911f1c52c7bcbb71a +size 828585088 diff --git a/masif_site/embeddings/esm2_35m/pooled_fp32.npy b/masif_site/embeddings/esm2_35m/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..dfd8d5b878a7e6bd52c9e7416ef938b12a55f00c --- /dev/null +++ b/masif_site/embeddings/esm2_35m/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a6ad5339cef3174d48173a0ae7840011d7badff4d497bc5d157cceb482e94f7f +size 6387968 diff --git a/masif_site/embeddings/esm2_35m/residue_fp16.npy b/masif_site/embeddings/esm2_35m/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..d99dba94a7593da1e03bff9d22a9342177c2933f --- /dev/null +++ b/masif_site/embeddings/esm2_35m/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7172fc4660b8daaccead0a9b4bbcdf8e873f3e7a885f23fe7864b87d5a1fb4c5 +size 621438848 diff --git a/masif_site/embeddings/esm2_3b/pooled_fp32.npy b/masif_site/embeddings/esm2_3b/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..3844bf4cf02b8912f0411062ad314dd710e844c4 --- /dev/null +++ b/masif_site/embeddings/esm2_3b/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2423c501cb0fdb8cc91c66bd7869e2aa3b17daa90e88d79050c4f8bf8267f2a4 +size 34068608 diff --git a/masif_site/embeddings/esm2_650m/pooled_fp32.npy b/masif_site/embeddings/esm2_650m/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..51e6563fb225160e0bda74beb641028aac74cb81 --- /dev/null +++ b/masif_site/embeddings/esm2_650m/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d44e13464814b3c752590e95c068f157d699b6b94da359eb40ba027e9957a605 +size 17034368 diff --git a/masif_site/embeddings/esm2_650m/residue_fp16.npy b/masif_site/embeddings/esm2_650m/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..68cabcc9386548e590c2765e4ca613616c3987ad --- /dev/null +++ b/masif_site/embeddings/esm2_650m/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:daec61bc2cc78b2c3dd437b5207c7ad2238d31b61649e2ac2d42ef8b2c7bf959 +size 1657170048 diff --git a/masif_site/embeddings/esm2_8m/pooled_fp32.npy b/masif_site/embeddings/esm2_8m/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..54cb250370a8ea351418e003756c2ca19332a21d --- /dev/null +++ b/masif_site/embeddings/esm2_8m/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db4270f457b9c3a5f30afe34f6ad506b4b871c64490f528a3f7aaa3b591c3da5 +size 4258688 diff --git a/masif_site/embeddings/esm2_8m/residue_fp16.npy b/masif_site/embeddings/esm2_8m/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..eb42a5515cf640682fa632fdc964d85f1ff488bd --- /dev/null +++ b/masif_site/embeddings/esm2_8m/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:328eb9e7ffc797f4a251a658b64d511e7323efe9df21d7a645b28081c8dde649 +size 414292608 diff --git a/masif_site/embeddings/esm3/pooled_fp32.npy b/masif_site/embeddings/esm3/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..65af32afd39639788847e027419371aae568cc04 --- /dev/null +++ b/masif_site/embeddings/esm3/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d4a015aad4cc721b269c5abe15cab1edc18b730389b107230c67c66bba2d18f6 +size 20441216 diff --git a/masif_site/embeddings/esm3/residue_fp16.npy b/masif_site/embeddings/esm3/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..98ef64fab312661f0b84d87918a46793dcb270f3 --- /dev/null +++ b/masif_site/embeddings/esm3/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ac85d059d6095c70899f8089cade78ce176aa43b01b144d8b9b01f1442cd8fe3 +size 1988604032 diff --git a/masif_site/embeddings/esm_if1/pooled_fp32.npy b/masif_site/embeddings/esm_if1/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ea731f9cf1b71180689d0d33c9c4f9fb4445f19 --- /dev/null +++ b/masif_site/embeddings/esm_if1/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:337a4fa1876ed85e45819955e17acd3ca294ba7754bfe4e77c3dbb243eefb087 +size 6813824 diff --git a/masif_site/embeddings/esm_if1/residue_fp16.npy b/masif_site/embeddings/esm_if1/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..39471ebcece328f15b25cb6049a54842e518e134 --- /dev/null +++ b/masif_site/embeddings/esm_if1/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:730ca9b9b1db8c0ab461856ccd45ab622f05fd5a7c06d5b30c29d37ad3350fb2 +size 662868096 diff --git a/masif_site/embeddings/gearnet/pooled_fp32.npy b/masif_site/embeddings/gearnet/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..2e2ff564deaea766a2025dd12084823e1b925275 --- /dev/null +++ b/masif_site/embeddings/gearnet/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:18de94b535e4a55b3cf27da744aa5eba9e21564aecd6b39eb01fa316fbc62446 +size 6813824 diff --git a/masif_site/embeddings/gearnet/residue_fp16.npy b/masif_site/embeddings/gearnet/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..d14dc85a73b4ca3e112b3e9b79db9cc9f1c24881 --- /dev/null +++ b/masif_site/embeddings/gearnet/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e196d5360b57a4b5207d2c12eb28a2d445925c28dfe2020ace4b36435ad4a71 +size 662868096 diff --git a/masif_site/embeddings/gearnet_pretrained/pooled_fp32.npy b/masif_site/embeddings/gearnet_pretrained/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..c3f00331200822dd0d575b1911b1d1445c85d95a --- /dev/null +++ b/masif_site/embeddings/gearnet_pretrained/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d8b6bb3f11444635affdb0893a2cfd22939436f02beccaf09483d0e4f956d397 +size 6813824 diff --git a/masif_site/embeddings/gearnet_pretrained/residue_fp16.npy b/masif_site/embeddings/gearnet_pretrained/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..ddf1fc8f6366f60e34d646acb5df70b0067acd91 --- /dev/null +++ b/masif_site/embeddings/gearnet_pretrained/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c962d30f0b5cc0230bc453dce3ddda54a91e0b734b0550a8deaab0dcb165e1b9 +size 662868096 diff --git a/masif_site/embeddings/gvp/pooled_fp32.npy b/masif_site/embeddings/gvp/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..f7dcda5ebeac48539ccbb55d869fa4123eec24cf --- /dev/null +++ b/masif_site/embeddings/gvp/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c96cf07d84a9c36c58eae8f9557b965e01504d2b0e65ca4c703a255e8fb15d1a +size 1543856 diff --git a/masif_site/embeddings/gvp/residue_fp16.npy b/masif_site/embeddings/gvp/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..7861045f3808ec857eda3d28bf319a01924e99e6 --- /dev/null +++ b/masif_site/embeddings/gvp/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e0cab702cebfab3351162f1f267d2130f5a85da7f214b88cd5d17d74ac986b04 +size 150181152 diff --git a/masif_site/embeddings/ipa/pooled_fp32.npy b/masif_site/embeddings/ipa/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..4b8257c674079d7331a0629ba932c77e5f0c51a1 --- /dev/null +++ b/masif_site/embeddings/ipa/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5da100f21212e0e0934f62ab6993e07d235a320805cf92174fe12b370b7db496 +size 1703552 diff --git a/masif_site/embeddings/ipa/residue_fp16.npy b/masif_site/embeddings/ipa/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..3b2b266f8eedbd075a60f898a63c1ed92d6f90e4 --- /dev/null +++ b/masif_site/embeddings/ipa/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be1ceab6baaa60a4a106f4252055dd5f5e93efb19c029d66b69ffe47b177ad0d +size 165717120 diff --git a/masif_site/embeddings/ipa_pretrained/pooled_fp32.npy b/masif_site/embeddings/ipa_pretrained/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..e5551b8696337252768b640111a316a31d264492 --- /dev/null +++ b/masif_site/embeddings/ipa_pretrained/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d85693807797626ca145816811ddf40121d2f209f5e870e59ac33f169c2753e8 +size 1703552 diff --git a/masif_site/embeddings/ipa_pretrained/residue_fp16.npy b/masif_site/embeddings/ipa_pretrained/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..40a2e37735a1bee7fbac503a1a1afb5be9384cad --- /dev/null +++ b/masif_site/embeddings/ipa_pretrained/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a0ea026caa73ceb1eca4ff6f2d959afd15ae480805440cde67e837bca65dae7 +size 165717120 diff --git a/masif_site/embeddings/lengths.npy b/masif_site/embeddings/lengths.npy new file mode 100644 index 0000000000000000000000000000000000000000..5a104ca231360400d0edaf2b5d0abfee3ffe5d0d --- /dev/null +++ b/masif_site/embeddings/lengths.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:20bd9524361390b724d4ef3c418498dfd0437d4f558e87a93cb996fff8d9c99b +size 26744 diff --git a/masif_site/embeddings/mace/pooled_fp32.npy b/masif_site/embeddings/mace/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..2303aa1ea431862ff21342f51d7404b8ef77a151 --- /dev/null +++ b/masif_site/embeddings/mace/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8ed2726232e1676a7b529d7a58abb1fd6061096c85f1d308d77f1e72ec6b8816 +size 1703552 diff --git a/masif_site/embeddings/mace/residue_fp16.npy b/masif_site/embeddings/mace/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..164f0d8892e5f5f56716533d807cbba3c82ec91e --- /dev/null +++ b/masif_site/embeddings/mace/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cd732cefbf3182f7ec78741c951e1ac7f0e075b3fee835110299747ed42c7ac8 +size 165717120 diff --git a/masif_site/embeddings/offsets.npy b/masif_site/embeddings/offsets.npy new file mode 100644 index 0000000000000000000000000000000000000000..97068cfc4bac782189574eaf0ddc58870e35aec9 --- /dev/null +++ b/masif_site/embeddings/offsets.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8024ddb07ea1cdccc6a37fa9292b7ac8b82f811e551f7b25de3bfe9dc84d76ba +size 26744 diff --git a/masif_site/embeddings/pottsmpnn/pooled_fp32.npy b/masif_site/embeddings/pottsmpnn/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..47429b2c24d1b8e65f7fba62c86ef23f581da9e0 --- /dev/null +++ b/masif_site/embeddings/pottsmpnn/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7f3aeebdb7c5ac7f8d8f12fc90f7049f5b3f82078115444e27e94be7c3298633 +size 1703552 diff --git a/masif_site/embeddings/pottsmpnn/residue_fp16.npy b/masif_site/embeddings/pottsmpnn/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..4c6096b56ceffb09fef088284f44cad8b41b3b33 --- /dev/null +++ b/masif_site/embeddings/pottsmpnn/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c2dfb8eaa42dc3cae8c4377a2cb4c31129657d56ea52478b2a42d3cef190aaf6 +size 165717120 diff --git a/masif_site/embeddings/pottsmpnn_ft/pooled_fp32.npy b/masif_site/embeddings/pottsmpnn_ft/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..d6c6dbc22c1ab63b615f2911da5614365a1b2591 --- /dev/null +++ b/masif_site/embeddings/pottsmpnn_ft/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3ee5cd4eb3ebdb323b539ca39f3ae537b91cdd3c206eba0fbc5bc7d3bd4fe707 +size 1703552 diff --git a/masif_site/embeddings/pottsmpnn_ft/residue_fp16.npy b/masif_site/embeddings/pottsmpnn_ft/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..5fb815cdbe8f83f43bf796f61d82241f4035034a --- /dev/null +++ b/masif_site/embeddings/pottsmpnn_ft/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c04dd3b12936dc1b567d0adcfde6b8c0a6833f3788f22f3d66cc8872e9ba0e5 +size 165717120 diff --git a/masif_site/embeddings/pottsmpnn_pretrained/pooled_fp32.npy b/masif_site/embeddings/pottsmpnn_pretrained/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..f7798a70249c6cb2ff1ee6e05b867351bcc3f324 --- /dev/null +++ b/masif_site/embeddings/pottsmpnn_pretrained/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c00f77120598db70cd559257dbaf410d005424de2a0d927dc9269c3294daf75b +size 1703552 diff --git a/masif_site/embeddings/pottsmpnn_pretrained/residue_fp16.npy b/masif_site/embeddings/pottsmpnn_pretrained/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..1e099dd4cdcabbc1b0dd537a3810d833d310f7c1 --- /dev/null +++ b/masif_site/embeddings/pottsmpnn_pretrained/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a5b0fd7cbabf1e33b9fe877ea968964c9bb5b49f210bc2406192f49b588900d +size 165717120 diff --git a/masif_site/embeddings/pottsmpnn_soluble/pooled_fp32.npy b/masif_site/embeddings/pottsmpnn_soluble/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..8eafe355e5a92e9355ba6b950fad728bddfee277 --- /dev/null +++ b/masif_site/embeddings/pottsmpnn_soluble/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c7769faa7f6535193513d2da711ff97d0a8b83313bf2a1f182cbd99795cbc98 +size 1703552 diff --git a/masif_site/embeddings/pottsmpnn_soluble/residue_fp16.npy b/masif_site/embeddings/pottsmpnn_soluble/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..732b50556d76d824e735da409d0e262bb38727ac --- /dev/null +++ b/masif_site/embeddings/pottsmpnn_soluble/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:45264f0a74f07238db3bd7e3edcd0602079936b7b296a310c611fe0d9fbcb608 +size 165717120 diff --git a/masif_site/embeddings/prostt5/pooled_fp32.npy b/masif_site/embeddings/prostt5/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..d62a86512ce8ae118312a5b5d373fc0c8bec0626 --- /dev/null +++ b/masif_site/embeddings/prostt5/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b84f4bd2ba190328c515c6c2e3cf8045ddea625d2aedd8e2468605b342cbd9d3 +size 13627520 diff --git a/masif_site/embeddings/prostt5/residue_fp16.npy b/masif_site/embeddings/prostt5/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..49fae5e44f1c199c5a6b10784f2db36358390aa3 --- /dev/null +++ b/masif_site/embeddings/prostt5/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ac8b699749c87968d36271c195f745761d363a1a95307f326667f3ac23a75eee +size 1325736064 diff --git a/masif_site/embeddings/protbert_bfd/pooled_fp32.npy b/masif_site/embeddings/protbert_bfd/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..7d37b5490a3bcb005443b82b27295eec99945903 --- /dev/null +++ b/masif_site/embeddings/protbert_bfd/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3920ad21bb7c62ea80e00d9bca95990364b9f70f676a6cfb9e743da687d4c70b +size 13627520 diff --git a/masif_site/embeddings/protbert_bfd/residue_fp16.npy b/masif_site/embeddings/protbert_bfd/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..77559a9ac1e4158dc1d617f566d56aa2fd7408c9 --- /dev/null +++ b/masif_site/embeddings/protbert_bfd/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e299ffcc7e1b5a0f4c1bf616213e262172108efab4c06d2bdaed4e31b31330c +size 1325736064 diff --git a/masif_site/embeddings/proteinmpnn/pooled_fp32.npy b/masif_site/embeddings/proteinmpnn/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..98a9094e1e5138ff8b6f535093a6b8c44669daf7 --- /dev/null +++ b/masif_site/embeddings/proteinmpnn/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d73ea2d26e364bdc581efb46c3caf977b6c70f52336ff8fbb50451f184dcd9c5 +size 1703552 diff --git a/masif_site/embeddings/proteinmpnn/residue_fp16.npy b/masif_site/embeddings/proteinmpnn/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..e40d29aefa2de06b6583f4a5aa51669791cacdb4 --- /dev/null +++ b/masif_site/embeddings/proteinmpnn/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cc205cfffd57a31f947f4f83e77bdc0643d4f2c867c6efc94ebe3d4606adbb72 +size 165717120 diff --git a/masif_site/embeddings/prottrans_t5_xl_u50/pooled_fp32.npy b/masif_site/embeddings/prottrans_t5_xl_u50/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..62b9ea83c8a5b368ad5ae9d9b2eb17fdb103709c --- /dev/null +++ b/masif_site/embeddings/prottrans_t5_xl_u50/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d6f142848c64aba39d523bd2317e31054c76b42f5f8738f3286286ffaf20a76 +size 13627520 diff --git a/masif_site/embeddings/prottrans_t5_xl_u50/residue_fp16.npy b/masif_site/embeddings/prottrans_t5_xl_u50/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..283bef0e6d222368b0490b9bb9fa48906af0c759 --- /dev/null +++ b/masif_site/embeddings/prottrans_t5_xl_u50/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:97b85fb2bef70821e6e59c1664918bd011c3b0061c1d5cdedbca56b301b9cfbd +size 1325736064 diff --git a/masif_site/embeddings/schnet/pooled_fp32.npy b/masif_site/embeddings/schnet/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ec72842329cfc0c0f3dc35f5ec2b9a05e624de5 --- /dev/null +++ b/masif_site/embeddings/schnet/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4d20b45dba47a146d95ab853ff0a41daa30e53a3dc86e7d6684c61a8abf00d42 +size 1703552 diff --git a/masif_site/embeddings/schnet/residue_fp16.npy b/masif_site/embeddings/schnet/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..23eedd1f21292d139ef0c971c8b3435560ff7f93 --- /dev/null +++ b/masif_site/embeddings/schnet/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b00fd419da373eb691c49d8e7dd77772413df66472f43c021b072e14e740d2b9 +size 165717120 diff --git a/masif_site/embeddings/tfn/pooled_fp32.npy b/masif_site/embeddings/tfn/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..7cc9f89ce67b9ccfc5776daf603da3e8ae77ec67 --- /dev/null +++ b/masif_site/embeddings/tfn/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:adeda634caad5b8d5639a3274b83d989f77c527a65badcfbbcd5d2752f85738a +size 1703552 diff --git a/masif_site/embeddings/tfn/residue_fp16.npy b/masif_site/embeddings/tfn/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..f82c737746956fc9b542768c3b21dcad8ca71751 --- /dev/null +++ b/masif_site/embeddings/tfn/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9771089e135ae0127680ffa1d4f800b5bd42022245265a77f5f23d6fdf7c7d98 +size 165717120 diff --git a/masif_site/embeddings/tfn_pretrained/pooled_fp32.npy b/masif_site/embeddings/tfn_pretrained/pooled_fp32.npy new file mode 100644 index 0000000000000000000000000000000000000000..28eac4b1cf748c3cd896591cbae2254015fe3c60 --- /dev/null +++ b/masif_site/embeddings/tfn_pretrained/pooled_fp32.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:28803a7cf8ebea0a583dddd37f1187fb5f71ea5f6b2ba11b713812281f97fc8b +size 1703552 diff --git a/masif_site/embeddings/tfn_pretrained/residue_fp16.npy b/masif_site/embeddings/tfn_pretrained/residue_fp16.npy new file mode 100644 index 0000000000000000000000000000000000000000..7bec463567319fe4f20f29da794d9057ec9b1b9e --- /dev/null +++ b/masif_site/embeddings/tfn_pretrained/residue_fp16.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dbb8f400c9f664ed91c3b801fcc4aeca3378a9187f0d0eac6317df7c07a23799 +size 165717120 diff --git a/masif_site/labels.h5 b/masif_site/labels.h5 new file mode 100644 index 0000000000000000000000000000000000000000..047c4a89243ac6fec81a367ee7b9d96130ec8558 --- /dev/null +++ b/masif_site/labels.h5 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4be22cbc98cc1f8a99b51622606ff883d77328802ea1895b4072f18bdd1f5847 +size 48704026 diff --git a/probing_data/labels.h5 b/probing_data/labels.h5 new file mode 100644 index 0000000000000000000000000000000000000000..70c5054332202aa77e37663ea02a69d1678b2a16 --- /dev/null +++ b/probing_data/labels.h5 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c4eb2b26ade39c0ef2f9eb9f38c3c3d15416d549d0b25974e828da2ba0818a37 +size 315794845 diff --git a/probing_embeddings/lengths.npy b/probing_embeddings/lengths.npy new file mode 100644 index 0000000000000000000000000000000000000000..21a6151992f86dfca5627e373814cf61c58862ad --- /dev/null +++ b/probing_embeddings/lengths.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:45a7cd188c5f5f86bd0521bc0f16818513dfb1861bb1ea2dc3506255fdf49821 +size 155816 diff --git a/probing_embeddings/offsets.npy b/probing_embeddings/offsets.npy new file mode 100644 index 0000000000000000000000000000000000000000..89f672df58a785ed91e2cb36ad50c24e32e6527c --- /dev/null +++ b/probing_embeddings/offsets.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb1e007cad98eb70bc3ba9611dc0a814ec3d7f1d680251d4302b7fc7105bce88 +size 155816 diff --git a/probing_embeddings_vframe/gcpnet_pretrained_vframe/meta.json b/probing_embeddings_vframe/gcpnet_pretrained_vframe/meta.json new file mode 100644 index 0000000000000000000000000000000000000000..b9e33f2026642e051f412af5b97174efaf4576ad --- /dev/null +++ b/probing_embeddings_vframe/gcpnet_pretrained_vframe/meta.json @@ -0,0 +1,75 @@ +{ + "encoder": "gcpnet_pretrained_vframe", + "source_encoder": "gcpnet_pretrained", + "source_dir": "protcompass/probing_embeddings/gcpnet_pretrained", + "representation": "[scalar channels (s), frame-projected vector channels (3v)]", + "s": 100, + "v": 16, + "dim": 148, + "frame": "F_i rows (x, y, z): x = (C - CA)/|C - CA|, z = x cross (N - CA) normalised, y = z cross x (protcompass/scripts/prereg_floors.py frame); vector block = F_i @ v_c(i) for c = 1..v, channel-major (v1x, v1y, v1z, v2x, ...)", + "vector_source": "chi (16 x 3 per atom) after the last GCP interaction layer; residue vector block = the CA atom's chi projected on F_i. residue_atommean_fp16.npy holds the mean over the residue's heavy atoms of F_i @ chi_a instead", + "scalar_source": "mean over the residue's heavy atoms of h, as released", + "released_rule": "official PSR model; 100 scalar channels + 16 vector norms, mean over the heavy atoms of each residue", + "weights": "pretrained", + "seed": null, + "checkpoint": "external_repos/GCPNet/checkpoints/PSR/model_epoch_115_localpearson_0_616_localspearman_0_532_localkendall_0_385_globalpearson_0_871_globalspearman_0_869_globalkendall_0_676.ckpt", + "checkpoint_sha256": "ff7b73be01fb57d5", + "weights_sha256": "15bd126ac55f26a2", + "weights_sha256_released": null, + "frame_coordinates": "N, CA, C atoms of the structure file as passed to GCPNet", + "env": "gcpnet", + "script": "protcompass/extract/extract_vector_frame.py", + "dataset": "protcompass/probing_data/labels.h5", + "date": "2026-09-23 23:11", + "seconds_extraction": 3235.5, + "seconds_total": 3245.9, + "n_domains": 19461, + "row_convention": "row r of residue_fp16.npy is row r of residue/* in labels.h5; pooled_fp32.npy row k is protein k (mean over its residues)", + "health": { + "n_rows": 19461, + "dim": 148, + "nan_values": 0, + "all_zero_rows": 0, + "distinct_rows": 19461, + "numerical_rank": 147, + "max_abs": 2.1466562747955322 + }, + "verification_vs_released": { + "a_scalar_maxabs_fp16_vs_released": 0.001953125, + "a_scalar_n_mismatch": 1115091, + "a_scalar_max_diff_in_fp16_ulps": 338.0, + "a_released_rule_maxabs_vs_released": 0.001953125, + "b_norm_maxabs_fp32_vs_released": 0.0009765625, + "b_norm_maxabs_fp16stored_vs_released": 0.001953125, + "b_norm_maxrel_fp32_vs_released": 0.0004852589090072101, + "b_norm_max_diff_fp16stored_in_fp16_ulps": 1.0, + "b_projection_norm_maxabs_vs_unprojected": 3.500246927856665e-07, + "n_values_scalar": 282352500, + "n_values_norm": 45176400, + "a_pooled_scalar_maxabs_vs_released": 6.67572021484375e-06 + }, + "rigid_motion_invariance": { + "median_rel_change_new": 7.067325867515433e-07, + "median_rel_change_released_rule": 6.254217271119709e-07, + "median_rel_change_atommean": 7.862303547001528e-07, + "max_rel_change_new": 0.002690649519475535, + "max_rel_change_released_rule": 0.0023747660044337315, + "max_rel_change_atommean": 0.0029557233950134394, + "n_proteins": 32, + "motion": "random proper rotation (QR of a Gaussian matrix) and a Gaussian translation of scale 10 A, applied to the input coordinates (GVP, MACE) or to every atom of the structure (GCPNet)", + "proteins": "the 32 proteins of the released input audit (input_audit.audit_proteins('probing'))" + }, + "extra_files": { + "residue_atommean_fp16.npy": "[mean_a h_a (100), mean_a F_i @ chi_a (48)] per residue, a = heavy atoms of residue i", + "pooled_atommean_fp32.npy": "mean over residues of residue_atommean_fp16.npy (from fp32)" + }, + "health_atommean": { + "n_rows": 19461, + "dim": 148, + "nan_values": 0, + "all_zero_rows": 0, + "distinct_rows": 19461, + "numerical_rank": 147, + "max_abs": 2.1466562747955322 + } +} diff --git a/probing_embeddings_vframe/lengths.npy b/probing_embeddings_vframe/lengths.npy new file mode 100644 index 0000000000000000000000000000000000000000..21a6151992f86dfca5627e373814cf61c58862ad --- /dev/null +++ b/probing_embeddings_vframe/lengths.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:45a7cd188c5f5f86bd0521bc0f16818513dfb1861bb1ea2dc3506255fdf49821 +size 155816 diff --git a/probing_embeddings_vframe/offsets.npy b/probing_embeddings_vframe/offsets.npy new file mode 100644 index 0000000000000000000000000000000000000000..89f672df58a785ed91e2cb36ad50c24e32e6527c --- /dev/null +++ b/probing_embeddings_vframe/offsets.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb1e007cad98eb70bc3ba9611dc0a814ec3d7f1d680251d4302b7fc7105bce88 +size 155816