{ "encoder": "esm3", "family": "patched", "target": "esm3_inproc", "weights": "pretrained", "rule": "final trunk residue embeddings, sequence and structure tracks", "env": "base", "checkpoint": "esm3-sm-open-v1/data/weights/esm3_sm_open_v1.pth", "dtype": "bfloat16", "n_parameters": 1401735748, "inputs_passed": "sequence track: true residues; structure track: VQ-VAE tokens from the real backbone (N, CA, C, O, CB) plus coordinates for geometric attention; function, SASA and secondary-structure tracks at their defaults", "patch": "patched/esm3_inproc.py", "dataset": "protcompass/confirmation/labels_v44.h5", "date": "2026-09-22 16:06", "seconds": 99.8, "n_domains": 1990, "dim": 1536, "row_convention": "row r of residue_fp16.npy is row r of residue/* in labels.h5", "health": { "n_rows": 1990, "dim": 1536, "nan_values": 0, "all_zero_rows": 0, "distinct_rows": 1990, "numerical_rank": 1536, "max_abs": 9211.4287109375 }, "input_audit": { "rel_change_jitter_1A": 0.509009407826544, "rel_change_coord_swap": 0.4000935921683898, "rel_change_seq_shuffle": 0.35550636124077734, "rel_change_rigid_motion": 0.0018285819013779668, "verdict": "pass" } }