{ "encoder": "ankh_base", "family": "hf_plm", "target": "ElnaggarLab/ankh-base", "weights": "pretrained", "rule": "final residue states, special tokens removed, masked mean over valid residues", "env": "base", "checkpoint": "ElnaggarLab/ankh-base", "checkpoint_revision": "d99cb6b966530dfc2ae96bc69d9255c2a07308b0", "dtype": "float32", "hidden_size": 768, "n_layers": 48, "n_parameters": 453170688, "inputs_passed": "amino-acid sequence only", "task": "ec_classification", "date": "2026-09-22 17:00", "seconds": 59.1, "pooling": "masked mean over all residues of the chain", "manifest": "manifest/ec_classification.csv", "rows": "held-out cohort: protcompass/confirmation_downstream/ids_ec_classification.txt", "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", "n_per_split": { "test": 2000 }, "health": { "n_rows": 2000, "dim": 768, "nan_values": 0, "all_zero_rows": 0, "distinct_rows": 1674, "numerical_rank": 768, "max_abs": 0.7743563652038574 }, "input_audit": { "rel_change_jitter_1A": 0.0, "rel_change_coord_swap": 0.0, "rel_change_seq_shuffle": 0.5002829140921271, "rel_change_rigid_motion": 0.0, "verdict": "pass" } }