{ "encoder": "esm3", "family": "patched", "target": "esm3_inproc", "weights": "pretrained", "rule": "final trunk residue embeddings, sequence and structure tracks", "env": "base", "checkpoint": "esm3-sm-open-v1/data/weights/esm3_sm_open_v1.pth", "dtype": "bfloat16", "n_parameters": 1401735748, "inputs_passed": "sequence track: true residues; structure track: VQ-VAE tokens from the real backbone (N, CA, C, O, CB) plus coordinates for geometric attention; function, SASA and secondary-structure tracks at their defaults", "patch": "patched/esm3_inproc.py", "task": "ec_classification", "date": "2026-09-22 17:05", "seconds": 267.4, "pooling": "masked mean over all residues of the chain", "manifest": "manifest/ec_classification.csv", "rows": "held-out cohort: protcompass/confirmation_downstream/ids_ec_classification.txt", "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", "n_per_split": { "test": 2000 }, "health": { "n_rows": 2000, "dim": 1536, "nan_values": 0, "all_zero_rows": 0, "distinct_rows": 2000, "numerical_rank": 1536, "max_abs": 9253.294921875 }, "input_audit": { "rel_change_jitter_1A": 0.3911045424821484, "rel_change_coord_swap": 0.1052052461015038, "rel_change_seq_shuffle": 0.23244728451209695, "rel_change_rigid_motion": 0.0020265780064980155, "verdict": "pass" } }