{ "encoder": "protbert_bfd", "family": "hf_plm", "target": "Rostlab/prot_bert_bfd", "weights": "pretrained", "rule": "final residue states, special tokens removed, masked mean over valid residues", "env": "base", "checkpoint": "Rostlab/prot_bert_bfd", "checkpoint_revision": "6c5c8a55a52ff08a664dfd584aa1773f125a0487", "dtype": "float32", "hidden_size": 1024, "n_layers": 30, "n_parameters": 418881536, "inputs_passed": "amino-acid sequence only", "task": "ec_classification", "date": "2026-09-20 11:40", "seconds": 75.4, "pooling": "masked mean over all residues of the chain", "manifest": "manifest/ec_classification.csv", "rows": "stage1 == 1", "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", "n_per_split": { "test": 3000, "train": 6000, "valid": 1500 }, "health": { "n_rows": 10500, "dim": 1024, "nan_values": 0, "all_zero_rows": 0, "distinct_rows": 8868, "numerical_rank": 1023, "max_abs": 2.1483848094940186 }, "input_audit": { "rel_change_jitter_1A": 0.0, "rel_change_coord_swap": 0.0, "rel_change_seq_shuffle": 0.4072423163663681, "rel_change_rigid_motion": 0.0, "verdict": "pass" } }