{ "codex_markers": [ "HOECHST", "CD44", "FOXP3", "CDX2", "CD8", "p53", "GATA3", "CD45", "T-bet", "beta-catenin", "HLA-DR", "PD-L1", "Ki67", "CD45RA", "CD4", "CD21", "MUC-1", "CD30", "CD2", "Vimentin", "CD20", "LAG-3", "Na-K-ATPase", "CD5", "IDO-1", "Cytokeratin", "CD11b", "CD56", "aSMA", "BCL-2", "CD25", "Collagen IV", "CD11c", "PD-1", "Granzyme B", "EGFR", "VISTA", "CD15", "CD194", "ICOS", "MMP9", "Synaptophysin", "CD71", "GFAP", "CD7", "CD3", "Chromogranin A", "CD163", "CD57", "CD45RO", "CD68", "CD31", "Podoplanin", "CD34", "CD38", "CD138", "MMP12" ], "orion_markers": [ "HOECHST", "AF1", "CD31", "CD45", "CD68", "Argo550", "CD4", "FOXP3", "CD8", "CD45RO", "CD20", "PD-L1", "CD3", "CD163", "E-cadherin", "PD-1", "Ki67", "Cytokeratin", "aSMA" ], "shared_markers": [ "HOECHST", "FOXP3", "CD8", "CD45", "PD-L1", "Ki67", "CD4", "CD20", "Cytokeratin", "aSMA", "PD-1", "CD3", "CD163", "CD45RO", "CD68", "CD31" ], "codex_shared_indices": [ 0, 2, 4, 7, 11, 12, 14, 20, 25, 28, 33, 45, 47, 49, 50, 51 ], "orion_shared_indices": [ 0, 7, 8, 3, 11, 16, 6, 10, 17, 18, 15, 12, 13, 9, 4, 2 ], "aliases": { "cd3e": "CD3", "panck": "Cytokeratin", "ecadherin": "E-cadherin", "betacatenin": "beta-catenin", "hoechst": "HOECHST" } }