"""Pairwise cross-encoders, fine-tuned on the ce split (disjoint from stack/val/test, so their scores are leak-free features downstream): m = microsoft/mdeberta-v3-base (MIT, 278M) text "name | address" b = BAAI/bge-reranker-v2-m3 (Apache-2.0, 568M) text "name: .. | addr: .. | country: .." Resumable training (exact step, same data order); inference shards are claimed dynamically by one worker per GPU, so the two shared cards drain one queue at whatever speed each has.""" import math import os import queue import threading import time import numpy as np import pandas as pd import torch from common import (Progress, drain, get_logger, gpu_patient, load_json, save_json, save_npy, save_parquet, shard_path, spawn_gpu_workers) from config import CES, CFG, PATHS, WORK from prep import load_prep, load_splits from retrieve_dense import n_shards log = get_logger("ce") os.environ.setdefault("HF_HOME", str(PATHS["hf_home"])) def ce_dir(key): return WORK / f"ce_{key}" def texts(split, side, key): d = load_prep(split, side, ["raw_name", "raw_addr", "raw_country"]) if CES[key]["text"] == "tagged": return ("name: " + d.raw_name + " | addr: " + d.raw_addr + " | country: " + d.raw_country).values return (d.raw_name + " | " + d.raw_addr).values def _hf(): from transformers import AutoModelForSequenceClassification, AutoTokenizer return AutoTokenizer, AutoModelForSequenceClassification def build_pairs(): """Positives + hard (top RRF rank) + random negatives of ce-split entities. Shared by both cross-encoders.""" path = WORK / "ce_pairs.parquet" if path.exists(): return pd.read_parquet(path) sp = load_splits() K = load_json(WORK / "reports" / "k_choice.json")["K"] parts = [] for i in range(n_shards("train")): d = pd.read_parquet(shard_path("block", "train", i), columns=["q", "c", "y", "rrf_rank"]) parts.append(d[np.isin(d.q.values, sp["g_ce"]) & (d.rrf_rank < K)]) d = pd.concat(parts, ignore_index=True) rng = np.random.default_rng(CFG["seed"]) # every true pair of the ce split, including those blocking missed ce_set = np.isin(sp["gt_q"], sp["g_ce"]) pos = pd.DataFrame({"q": sp["gt_q"][ce_set], "c": sp["gt_c"][ce_set], "y": 1}) neg = d[d.y == 0].sort_values(["q", "rrf_rank"]) hard = neg.groupby("q").head(CFG["ce_neg_hard"]) rest = neg.drop(hard.index) rnd = rest.assign(r=rng.random(len(rest))).sort_values(["q", "r"]).groupby("q").head(CFG["ce_neg_rand"]) pairs = pd.concat([pos, hard[["q", "c", "y"]], rnd[["q", "c", "y"]]], ignore_index=True) pairs["y"] = pairs.y.astype(np.int8) pairs = pairs.sample(frac=1.0, random_state=CFG["seed"]).reset_index(drop=True) from decide import fold_of pairs["dev"] = fold_of(pairs.q.values, 30, salt=3) == 0 save_parquet(pairs, path) log.info(f"ce pairs: {len(pairs)} (pos {int(pairs.y.sum())}), dev {int(pairs.dev.sum())}") return pairs def _lr_lambda(total, warm): return lambda s: min(1.0, (s + 1) / max(1, warm)) * max(0.0, (total - s) / max(1, total - warm)) class Prefetch: """Tokenise upcoming batches on a background thread (HF fast tokenisers release the GIL).""" def __init__(self, make, steps, depth=4): self.q = queue.Queue(depth) self.t = threading.Thread(target=self._run, args=(make, steps), daemon=True) self.t.start() def _run(self, make, steps): for s in steps: try: self.q.put((s, make(s))) except Exception as e: # surface tokeniser errors in the main thread self.q.put((s, e)) return self.q.put(None) def __iter__(self): while True: item = self.q.get() if item is None: return if isinstance(item[1], Exception): raise item[1] yield item def run_ce_train(key): spec = CES[key] D = ce_dir(key) final = D / "final" if (final / "config.json").exists(): return AutoTokenizer, AutoModel = _hf() pairs = build_pairs() tr, dv = pairs[~pairs.dev].reset_index(drop=True), pairs[pairs.dev].reset_index(drop=True) if len(tr) > spec["max_pairs"]: tr = tr.head(spec["max_pairs"]) # pairs are pre-shuffled: a uniform sample, pos/neg mix kept ta, tb = texts("train", "s1", key), texts("train", "pool", key) tok = AutoTokenizer.from_pretrained(spec["model"]) # transformers>=5 loads the stored dtype (fp16 for mDeBERTa); fp16 master weights + AdamW -> NaN. fp32 master # weights + bf16 autocast. model = AutoModel.from_pretrained(spec["model"], num_labels=1, dtype=torch.float32) model = gpu_patient(lambda: model.cuda(), log, "load cross-encoder") B = spec["batch"] spe = math.ceil(len(tr) / B) total = spe * spec["epochs"] if CFG["ce_max_steps"]: total = min(total, CFG["ce_max_steps"]) opt = torch.optim.AdamW(model.parameters(), lr=spec["lr"], weight_decay=0.01) sched = torch.optim.lr_scheduler.LambdaLR(opt, _lr_lambda(total, int(0.05 * total))) ck = D / "ckpt.pt" step = 0 if ck.exists(): st = torch.load(ck, map_location="cuda", weights_only=False) model.load_state_dict(st["model"]); opt.load_state_dict(st["opt"]); sched.load_state_dict(st["sched"]) step = st["step"] log.info(f"[{key}] resumed from step {step}/{total}") lossf = torch.nn.BCEWithLogitsLoss() model.train() perms = {} def make(s): e, b = divmod(s, spe) if e not in perms: perms.clear() perms[e] = np.random.default_rng(CFG["seed"] + e).permutation(len(tr)) idx = perms[e][b * B:(b + 1) * B] q, c, y = tr.q.values[idx], tr.c.values[idx], tr.y.values[idx] swap = ((q.astype(np.int64) + c + e) % 2) == 1 # both text orders a, bb = ta[q], tb[c] x1, x2 = np.where(swap, bb, a).tolist(), np.where(swap, a, bb).tolist() enc = tok(x1, x2, truncation=True, max_length=spec["max_len"], padding=True, return_tensors="pt") return enc, torch.tensor(y, dtype=torch.float32) t0, run = time.time(), [] D.mkdir(parents=True, exist_ok=True) it = iter(Prefetch(make, range(step, total))) pending = None n_micro = 1 # grows on OOM: same effective batch, less memory oom_since = None # continuous OOM for > 2 h fails the stage (retry may pick another GPU) while step < total: s, (enc, y) = pending if pending else next(it) pending = None assert s == step try: lv = 0.0 n = len(y) for rows in np.array_split(np.arange(n), min(n_micro, n)): part = {k: v[rows].to("cuda") for k, v in enc.items()} with torch.autocast("cuda", dtype=torch.bfloat16): logits = model(**part).logits.squeeze(-1) loss = lossf(logits.float(), y[rows].cuda()) * (len(rows) / n) loss.backward() lv += loss.item() except torch.cuda.OutOfMemoryError: # shared GPU filled up: smaller micro-batches, then wait opt.zero_grad(set_to_none=True) logits = loss = part = None torch.cuda.empty_cache() if n_micro < 16: n_micro *= 2 log.warning(f"[{key}] OOM at step {step}: now {n_micro} micro-batches per step") else: oom_since = oom_since or time.time() if time.time() - oom_since > 2 * 3600: raise RuntimeError(f"[{key}] GPU out of memory for 2 h even with 16 micro-batches") log.warning(f"[{key}] OOM at step {step}; waiting 60s for the shared GPU") time.sleep(60) pending = (s, (enc, y)) continue oom_since = None loss = torch.tensor(lv) gn = torch.nn.utils.clip_grad_norm_(model.parameters(), 1.0) if not torch.isfinite(gn): raise RuntimeError(f"[{key}] non-finite gradient at step {step}; refusing to save a corrupted checkpoint") opt.step(); sched.step(); opt.zero_grad(set_to_none=True) step += 1 run.append(loss.item()) if step % 100 == 0: log.info(f"[{key}] step {step}/{total} loss {np.mean(run[-100:]):.4f} {(time.time() - t0) / 60:.1f}m") if step % CFG["ce_ckpt_every"] == 0 or step == total: tmp = ck.with_suffix(".tmp") torch.save({"model": model.state_dict(), "opt": opt.state_dict(), "sched": sched.state_dict(), "step": step}, tmp) os.replace(tmp, ck) model.eval() p = score(model, tok, ta[dv.q.values], tb[dv.c.values], spec) from sklearn.metrics import roc_auc_score auc = roc_auc_score(dv.y.values, p) if dv.y.nunique() > 1 else float("nan") tmpd = D / "final.tmp" model.save_pretrained(tmpd); tok.save_pretrained(tmpd) os.replace(tmpd, final) save_json({"dev_auc": auc, "steps": total, "n_train": len(tr), "model": spec["model"]}, WORK / "reports" / f"ce_train_{key}.json") ck.unlink(missing_ok=True) log.info(f"[{key}] cross-encoder dev AUC {auc:.5f}") @torch.no_grad() def score(model, tok, a, b, spec, bs=None): """Length-sorted batches (minimal padding), tokenised one batch ahead on a background thread.""" bs = bs or spec["infer_batch"] n = len(a) out = np.empty(n, dtype=np.float32) if n == 0: return out order = np.argsort([len(x) + len(y) for x, y in zip(a, b)], kind="stable") waited = 0 while True: batches = [order[i:i + bs] for i in range(0, n, bs)] def make(k): idx = batches[k] return tok([a[j] for j in idx], [b[j] for j in idx], truncation=True, max_length=spec["max_len"], padding=True, return_tensors="pt") try: for k, enc in Prefetch(make, range(len(batches))): enc = enc.to("cuda") with torch.autocast("cuda", dtype=torch.bfloat16): out[batches[k]] = model(**enc).logits.squeeze(-1).float().cpu().numpy() return out except torch.cuda.OutOfMemoryError: torch.cuda.empty_cache() if bs <= 16: waited += 60 if waited > 2 * 3600: raise RuntimeError("cross-encoder inference: GPU out of memory for 2 h at the minimum batch") log.warning("OOM at the minimum batch; waiting 60s for the shared GPU") time.sleep(60) bs = max(16, bs // 2) log.warning(f"OOM -> inference batch {bs} (restarting this shard)") def s2_file(split): return WORK / "s2" / f"{split}.parquet" # Scores are cached by (q, c): when the stage-2 set changes (e.g. the ename union), only pairs without a score are # sent to the GPUs. Work units are shards of the "need" list, named by a hash of that list, so a changed list can # never pick up shards of an older one. def cache_path(key, split): return WORK / "ce_cache" / f"{key}_{split}.parquet" def _read_cache(key, split): p = cache_path(key, split) return pd.read_parquet(p) if p.exists() else pd.DataFrame({"q": np.empty(0, np.int32), "c": np.empty(0, np.int32), "ce": np.empty(0, np.float32)}) def _write_cache(key, split, add): cur = _read_cache(key, split) new = pd.concat([cur, add[["q", "c", "ce"]]], ignore_index=True).drop_duplicates(["q", "c"], keep="last") save_parquet(new.reset_index(drop=True), cache_path(key, split)) def cache_scores(key, split, old_s2): """Move legacy row-position shards (scores of an older stage-2 set, in its row order) into the keyed cache, then rename their folder so they can never be matched against a different set.""" n = len(old_s2) paths = [shard_path(f"ce_scores_{key}", split, i, "npy") for i in range(max(1, math.ceil(n / CFG["ce_shard_pairs"])))] if n and all(p.exists() for p in paths): ce = np.concatenate([np.load(p) for p in paths]) if len(ce) == n: _write_cache(key, split, old_s2.assign(ce=ce)) d = paths[0].parent os.replace(d, d.with_name(f"{split}_legacy_{int(time.time())}")) log.info(f"ce_{key}/{split}: cached {n} legacy scores by (q, c)") def _need(key, split): s2 = pd.read_parquet(s2_file(split), columns=["q", "c"]) cache = _read_cache(key, split) k2 = s2.q.values.astype(np.int64) * (1 << 32) + s2.c.values kc = np.sort(cache.q.values.astype(np.int64) * (1 << 32) + cache.c.values) from decide import in_sorted need = s2[~in_sorted(k2, kc)].reset_index(drop=True) import hashlib h = hashlib.sha1((need.q.values.astype(np.int64) * (1 << 32) + need.c.values).tobytes()).hexdigest()[:10] return need, h def _need_file(key, split, h): return WORK / "ce_need" / f"{key}_{split}_{h}.parquet" def _need_paths(key, split, h, n): return [shard_path(f"ce_scores_{key}", split, i, "npy", sub=h) for i in range(max(1, math.ceil(n / CFG["ce_shard_pairs"])))] def load_infer_model(key): """Inference copy: bf16 weights (autocast already runs every matmul in bf16; bf16 weights drop the per-op casts and halve memory -> larger batches) and fused SDPA attention where the architecture supports it.""" AutoTokenizer, AutoModel = _hf() d = ce_dir(key) / "final" tok = AutoTokenizer.from_pretrained(d) kw = {"attn_implementation": "sdpa"} if "xlm" in (d / "config.json").read_text().lower() else {} dt = torch.bfloat16 if CFG["infer_bf16"] else torch.float32 model = AutoModel.from_pretrained(d, dtype=dt, **kw) model = gpu_patient(lambda: model.cuda().eval(), log, "load cross-encoder") return tok, model def _text_shard(key, split, h, i): return WORK / "ce_need" / f"{key}_{split}_{h}" / f"shard_{i:05d}.parquet" def _write_text_shards(key, split, h, need, paths): """The stage process materialises each unfinished shard's text pairs once, so every GPU worker holds only the model and one shard in RAM (loading the texts of all 10M pool records per worker made them the largest processes on the box - and the kernel's OOM killer's first choice when other users fill the RAM).""" todo = [i for i, p in enumerate(paths) if not p.exists() and not _text_shard(key, split, h, i).exists()] if not todo: return ta, tb = texts(split, "s1", key), texts(split, "pool", key) S = CFG["ce_shard_pairs"] for i in todo: q, c = need.q.values[i * S:(i + 1) * S], need.c.values[i * S:(i + 1) * S] save_parquet(pd.DataFrame({"a": ta[q], "b": tb[c]}), _text_shard(key, split, h, i)) log.info(f"ce_{key}/{split}: wrote text for {len(todo)} shard(s)") def run_ce_infer_worker(key, split, h): need = pd.read_parquet(_need_file(key, split, h), columns=["q"]) paths = _need_paths(key, split, h, len(need)) del need if all(p.exists() for p in paths): return spec = CES[key] tok, model = load_infer_model(key) def job(i): t = pd.read_parquet(_text_shard(key, split, h, i)) save_npy(paths[i], score(model, tok, t.a.values, t.b.values, spec)) drain(paths, job, log, f"ce_{key} infer {split} (GPU {os.environ.get('CUDA_VISIBLE_DEVICES')})") def run_ce_infer(key, split): need, h = _need(key, split) log.info(f"ce_{key}/{split}: {len(need)} pairs need scores (list {h})") if len(need): f = _need_file(key, split, h) if not f.exists(): save_parquet(need, f) paths = _need_paths(key, split, h, len(need)) _write_text_shards(key, split, h, need, paths) import gc gc.collect() spawn_gpu_workers(["ce_infer_worker", key, split, h], log, CES[key]["mem_infer"]) while True: # helpers on other GPUs may still hold claims on the last shards missing = [p for p in paths if not p.exists()] if not missing: break if not any(os.path.exists(str(p) + ".claim") for p in missing): raise RuntimeError(f"missing ce_{key} shards {[str(p) for p in missing[:5]]}") time.sleep(30) _write_cache(key, split, need.assign(ce=np.concatenate([np.load(p) for p in paths])[:len(need)])) load_ce_scores(key, split) # asserts full coverage def load_ce_scores(key, split): s2 = pd.read_parquet(s2_file(split), columns=["q", "c"]) d = s2.merge(_read_cache(key, split), on=["q", "c"], how="left") miss = int(d.ce.isna().sum()) if miss: raise RuntimeError(f"ce_{key}/{split}: {miss} stage-2 pairs have no score") return d.rename(columns={"ce": f"ce_{key}"})