"""Stages: fetch (Hugging Face inputs), manifest (integrity), prep (normalised views + legal forms), test_tsv, splits.""" import os import random from collections import Counter from multiprocessing import Pool from pathlib import Path import numpy as np import pandas as pd import pyarrow.parquet as pq import text_utils as tu from common import Progress, get_logger, load_json, n_workers, save_json, save_npz, save_parquet from config import CFG, EMB, EMB_MODELS, HF, PATHS, PREP, WORK from embeddings import emb_ids, load_emb log = get_logger("prep") RAW_COLS = ["entity_id", "business_name", "business_address", "country"] SIDES = [("train", "s1"), ("train", "pool"), ("test", "s1"), ("test", "pool")] # ----------------------------------------------------------------------------------------------- fetch def _needed_files(): need = {"data": [p for sp in PATHS["data"].values() for p in sp.values()] + [PATHS["ground_truth"]]} for m in EMB_MODELS: spec = EMB[m] fs = [] for split in ("train", "test"): d = Path(spec[split]) if spec["kind"] == "shards": fs += [d / f"source{s}" / "manifest.json" for s in (1, 2, 3)] elif spec["kind"] == "s1pool": fs += [d / f"{s}{x}" for s in ("s1", "pool") for x in (".npy", ".ids.txt")] else: fs += [d / f"{split}_{s}" / x for s in ("s1", "pool") for x in ("matrix.npy", "ids.txt")] need[m] = fs return need def run_fetch(): """Download any missing input from Hugging Face (snapshot_download resumes partial files). Nothing is downloaded when every file is already present.""" missing = {k: [str(f) for f in fs if not Path(f).exists()] for k, fs in _needed_files().items()} missing = {k: v for k, v in missing.items() if v} if not missing: log.info("all inputs present locally; nothing to download") return from huggingface_hub import snapshot_download token = os.environ.get("HF_TOKEN") for key, files in missing.items(): repo, local, allow = HF[key] log.info(f"{key}: {len(files)} missing file(s), e.g. {files[0]} -> downloading {repo} into {local}") for attempt in range(5): try: snapshot_download(repo_id=repo, repo_type="dataset", local_dir=str(local), token=token, allow_patterns=allow, max_workers=8) break except Exception as e: # network flake: back off and resume log.warning(f"{repo}: download attempt {attempt + 1} failed: {e}") if attempt == 4: raise import time time.sleep(60 * (attempt + 1)) still = [str(f) for fs in _needed_files().values() for f in fs if not Path(f).exists()] if still: raise RuntimeError(f"inputs still missing after download: {still[:5]}") # ----------------------------------------------------------------------------------------------- manifest def read_raw(split, side): files = [PATHS["data"][split][1]] if side == "s1" else [PATHS["data"][split][2], PATHS["data"][split][3]] df = pd.concat([pq.read_table(f, columns=RAW_COLS).to_pandas() for f in files], ignore_index=True) for c in RAW_COLS: df[c] = df[c].fillna("").astype(str) return df def prep_path(split, side): return PREP / f"{split}_{side}.parquet" def load_prep(split, side, columns=None): return pd.read_parquet(prep_path(split, side), columns=columns) def _norm_scan(e, rng, n=50_000): rows = np.unique(np.concatenate([rng.choice(len(e), min(n, len(e)), replace=False), np.arange(min(1000, len(e))), np.arange(max(0, len(e) - 1000), len(e))])) x = e.take(rows).astype(np.float32) nr = np.linalg.norm(x, axis=1) return {"sampled": int(len(rows)), "norm_min": float(np.nanmin(nr)), "norm_max": float(np.nanmax(nr)), "norm_bad": int((~np.isfinite(nr) | (np.abs(nr - 1) > 0.01)).sum())} def run_manifest(): """Fatal integrity checks: row counts, id order (id_mismatch must be 0), unit norm, and a semantic row alignment test on ground-truth pairs (true pair vs the pair shifted by one row).""" rep, problems = {}, [] ids = {} rng = np.random.default_rng(0) for split, side in SIDES: df = read_raw(split, side) n = len(df) dup = int(df.entity_id.duplicated().sum()) ok_pref = df.entity_id.str[:3].isin(["S1-"] if side == "s1" else ["S2-", "S3-"]).all() r = rep[f"{split}_{side}"] = {"rows": n, "dup_ids": dup, "prefix_ok": bool(ok_pref), "countries": df.country.value_counts().to_dict(), "empty_name": int((df.business_name == "").sum()), "empty_addr": int((df.business_address == "").sum()), "emb": {}} if dup or not ok_pref: problems.append(f"{split}_{side}: dup={dup} prefix_ok={ok_pref}") ids[(split, side)] = df.entity_id.values for m in EMB_MODELS: e = load_emb(m, split, side) er = r["emb"][m] = {"rows": len(e), "dim": e.dim, **_norm_scan(e, rng)} if len(e) != n: problems.append(f"{m} {split}_{side}: {len(e)} emb rows vs {n} data rows") eids = emb_ids(m, split, side) if eids is not None: mm = int((np.asarray(eids, dtype=object) != df.entity_id.values).sum()) if len(eids) == n else None er["id_mismatch"] = mm if mm != 0: problems.append(f"{m} {split}_{side}: id_mismatch={mm}") if er["norm_bad"]: problems.append(f"{m} {split}_{side}: {er['norm_bad']} sampled rows not unit-norm") log.info(f"checked {split}_{side}: {r}") gt = pd.read_csv(PATHS["ground_truth"], sep="\t", dtype=str, keep_default_na=False) s1ids, pool_ids = ids[("train", "s1")], ids[("train", "pool")] matched = [x for m in gt.matched_entity_ids if m for x in m.split(",")] cnt = Counter(matched) pool_set = set(pool_ids) rep["ground_truth"] = {"rows": len(gt), "s1_covered": int(gt.source1_entity_id.isin(set(s1ids)).sum()), "n_matched": len(matched), "unknown_ids": int(sum(1 for x in cnt if x not in pool_set)), "multi_owner": int(sum(1 for v in cnt.values() if v > 1))} if rep["ground_truth"]["unknown_ids"] or rep["ground_truth"]["s1_covered"] != len(s1ids): problems.append(f"ground truth coverage: {rep['ground_truth']}") if rep["ground_truth"]["multi_owner"]: problems.append("S2/S3 ids owned by >1 S1: one-owner arbitration invalid") s1_index = pd.Index(s1ids) pool_index = pd.Index(pool_ids) sub = gt[gt.matched_entity_ids != ""].sample(20_000, random_state=0) a = s1_index.get_indexer(sub.source1_entity_id) b = pool_index.get_indexer(sub.matched_entity_ids.str.split(",").str[0]) ok = (a + 1 < len(s1ids)) & (b + 1 < len(pool_ids)) a, b = a[ok], b[ok] rand = rng.choice(len(pool_ids), len(b)) for m in EMB_MODELS: es, ep = load_emb(m, "train", "s1"), load_emb(m, "train", "pool") qa, pb = es.take(a).astype(np.float32), ep.take(b).astype(np.float32) t = (qa * pb).sum(1) sh_q = (es.take(a + 1).astype(np.float32) * pb).sum(1) sh_p = (qa * ep.take(b + 1).astype(np.float32)).sum(1) rnd = (qa * ep.take(rand).astype(np.float32)).sum(1) al = {"cos_true": float(t.mean()), "cos_random": float(rnd.mean()), "frac_true_beats_s1_shift": float((t > sh_q).mean()), "frac_true_beats_pool_shift": float((t > sh_p).mean())} rep["ground_truth"][f"{m}_alignment"] = al if al["frac_true_beats_s1_shift"] < 0.95 or al["frac_true_beats_pool_shift"] < 0.95 or \ al["cos_true"] - al["cos_random"] < 0.1: problems.append(f"{m}: embedding rows not aligned with parquet rows: {al}") rep["problems"] = problems save_json(rep, WORK / "reports" / "manifest.json") if problems: raise RuntimeError("integrity manifest failed: " + "; ".join(problems)) log.info("manifest OK") # ----------------------------------------------------------------------------------------------- prep _FORMS = None def _init(forms): global _FORMS _FORMS = forms def _tok_chunk(names): return [tu.name_tokens(x) for x in names] def _proc_chunk(args): names, addrs, countries = args rows = [] for n, a, c in zip(names, addrs, countries): forms, long_single = _FORMS.get(c, ([], set())) r = tu.process_name(n, forms, long_single) r.update(tu.parse_address(a)) rows.append(r) return pd.DataFrame(rows) def norm_country(s): return s.strip().lower() or "unknown" def run_prep(): PREP.mkdir(parents=True, exist_ok=True) forms_path = PREP / "legal_forms.json" raws = {} with Pool(n_workers()) as pool: if not forms_path.exists(): by_c = {} for split, side in SIDES: df = read_raw(split, side) df["cn"] = df.country.map(norm_country) raws[(split, side)] = df for c, g in df.groupby("cn"): by_c.setdefault(c, []).extend(g.business_name.tolist()) rng = random.Random(CFG["seed"]) forms = {} for c, names in by_c.items(): if len(names) > CFG["legal_sample"]: names = rng.sample(names, CFG["legal_sample"]) chunks = [names[i:i + 50_000] for i in range(0, len(names), 50_000)] toks = [t for part in pool.map(_tok_chunk, chunks) for t in part] f = tu.discover_legal_forms(toks, CFG["legal_min_frac"], CFG["legal_boundary_ratio"], CFG["legal_max_cooc"], CFG["legal_bigram_tight"]) forms[c] = [" ".join(x) for x in f] log.info(f"legal forms [{c}] from {len(names)} names: {forms[c]}") save_json(forms, forms_path) forms = load_json(forms_path) forms_t = {c: ([tuple(x.split()) for x in v], {x for x in v if " " not in x and len(x) >= 3}) for c, v in forms.items()} with Pool(n_workers(), initializer=_init, initargs=(forms_t,)) as pool: for split, side in SIDES: out = prep_path(split, side) if out.exists(): continue df = raws.pop((split, side), None) if df is None: df = read_raw(split, side) df["cn"] = df.country.map(norm_country) step = 100_000 args = [(df.business_name.values[i:i + step], df.business_address.values[i:i + step], df.cn.values[i:i + step]) for i in range(0, len(df), step)] prog = Progress(log, len(args), f"prep {split}_{side}") parts = [] for part in pool.imap(_proc_chunk, args): parts.append(part) prog.step() feat = pd.concat(parts, ignore_index=True) res = pd.DataFrame({"id": df.entity_id.values, "country": df.cn.values, "src": df.entity_id.str[1].astype(np.int8).values, "raw_name": df.business_name.values, "raw_addr": df.business_address.values, "raw_country": df.country.values}) res = pd.concat([res, feat], axis=1) save_parquet(res, out) log.info(f"wrote {out} rows={len(res)}") def run_test_tsv(): """The organisers' validator reads test_source{1,2,3}.tsv; write them from the parquet (same ids/rows).""" d = PATHS["test_tsv"] for s in (1, 2, 3): out = d / f"test_source{s}.tsv" if out.exists(): continue df = pq.read_table(PATHS["data"]["test"][s], columns=RAW_COLS).to_pandas() tmp = out.with_name(f".{out.name}.tmp") tmp.parent.mkdir(parents=True, exist_ok=True) df.to_csv(tmp, sep="\t", index=False) os.replace(tmp, out) log.info(f"wrote {out} rows={len(df)}") # ----------------------------------------------------------------------------------------------- splits GROUPS = ("ce", "lce", "stack", "val") def run_splits(): s1 = load_prep("train", "s1", ["id", "country"]) pool_ids = load_prep("train", "pool", ["id"]).id.values rng = np.random.default_rng(CFG["seed"]) perm = rng.permutation(len(s1)) # ce/stack/val are carved first in model-4's order so that, at the full-size config, ce/stack/val equal # model-4's groups; lce comes from the remainder sizes = [("ce", CFG["n_ce"]), ("stack", CFG["n_stack"]), ("val", CFG["n_val"]), ("lce", CFG["n_lce"])] groups, o = {}, 0 for g, n in sizes: groups[g] = np.sort(perm[o:o + n]) o += n for a in GROUPS: # leakage guard for b in GROUPS: if a < b: assert len(np.intersect1d(groups[a], groups[b])) == 0, f"split groups {a} and {b} overlap" q_train = np.sort(np.concatenate(list(groups.values()))) n_test = len(load_prep("test", "s1", ["id"])) q_test = np.arange(n_test) if CFG["test_limit"]: q_test = np.sort(rng.choice(n_test, CFG["test_limit"], replace=False)) gt = pd.read_csv(PATHS["ground_truth"], sep="\t", dtype=str, keep_default_na=False) s1_index = pd.Series(np.arange(len(s1)), index=s1.id.values) pool_index = pd.Series(np.arange(len(pool_ids)), index=pool_ids) gt = gt[gt.matched_entity_ids != ""] ex = gt.assign(m=gt.matched_entity_ids.str.split(",")).explode("m") gq = s1_index.loc[ex.source1_entity_id.values].values.astype(np.int64) gc = pool_index.loc[ex.m.values].values.astype(np.int64) n_true = np.bincount(gq, minlength=len(s1)).astype(np.int16) save_npz(WORK / "splits.npz", q_train=q_train, q_test=q_test, n_true=n_true, gt_q=gq, gt_c=gc, **{f"g_{k}": v for k, v in groups.items()}) rep = {k: {"n": int(len(v)), "countries": pd.Series(s1.country.values[v]).value_counts().to_dict(), "singleton_rate": float((n_true[v] == 0).mean())} for k, v in groups.items()} rep["q_test"] = int(len(q_test)) save_json(rep, WORK / "reports" / "splits.json") log.info(f"splits: {rep}") def load_splits(): z = np.load(WORK / "splits.npz") return {k: z[k] for k in z.files}