"""Tools module for scPTR."""

from ._beta import estimate_beta
from ._gamma import estimate_gamma
from ._variance import variance_decomposition
from ._pt_states import pt_states
from ._rank_genes import rank_pt_genes
from ._network import infer_network
from ._velocity import pt_velocity
from ._motif_priors import load_motif_priors, list_known_rbps
from ._mirna_targets import load_targetscan_predictions, mirna_gamma_correlation

__all__ = [
    "estimate_beta",
    "estimate_gamma",
    "variance_decomposition",
    "pt_states",
    "rank_pt_genes",
    "infer_network",
    "pt_velocity",
    "load_motif_priors",
    "list_known_rbps",
    "load_targetscan_predictions",
    "mirna_gamma_correlation",
]