{ "primary_comparison": "Matched original-architecture GRASP control, A1, A2; training replicate 0; three shared outer splits.", "matched_endpoint_split_triplets": 69, "individual_prediction_cells_verified": 207, "model_mean_endpoint_mae": { "control": 0.3702320498982857, "a1": 0.3685879578170505, "a2": 0.3662318774785543 }, "model_split_macro_population_sd": { "control": 0.004206375431646905, "a1": 0.0010903069555724331, "a2": 0.002152111407523036 }, "lowest_mean_endpoint_counts": { "a1": 10, "control": 8, "a2": 5 }, "contrasts": [ { "baseline": "control", "changed": "a1", "mean_mae_difference": -0.001644092081235165, "relative_macro_mae_reduction_pct": 0.4440707069220114, "endpoint_bootstrap_lower95": -0.011490278989452225, "endpoint_bootstrap_upper95": 0.008019370245648885, "changed_lower_endpoints": 11, "changed_higher_endpoints": 12, "changed_lower_split_cells": 36 }, { "baseline": "control", "changed": "a2", "mean_mae_difference": -0.00400017241973136, "relative_macro_mae_reduction_pct": 1.0804500639073136, "endpoint_bootstrap_lower95": -0.012635722835392695, "endpoint_bootstrap_upper95": 0.004425803942156549, "changed_lower_endpoints": 14, "changed_higher_endpoints": 9, "changed_lower_split_cells": 37 }, { "baseline": "a1", "changed": "a2", "mean_mae_difference": -0.002356080338496194, "relative_macro_mae_reduction_pct": 0.6392179365951124, "endpoint_bootstrap_lower95": -0.010505056285555462, "endpoint_bootstrap_upper95": 0.004859561931627686, "changed_lower_endpoints": 8, "changed_higher_endpoints": 15, "changed_lower_split_cells": 38 } ], "repeat_context": { "control": 0.3652608053129453, "a1": 0.36943776142909285 }, "historical_released_grasp_macro_mae": 0.374183478126786, "bootstrap": { "draws": 100000, "seed": 20261024, "unit": "endpoint mean across the three fixed splits", "interval": "95% percentile, exploratory; no multiplicity correction" }, "checks": "Passed: cohort hashes and row counts, ordered test targets, split IDs, seeds, run configs, software versions, Step2 data/recipe, initialized heads; all primary MAEs recomputed.", "limitations": [ "One pretraining seed per architecture and one matched downstream replicate for A2.", "A2 has fewer downstream replicates than the completed control/A1 repeated evaluation.", "Fixed test molecules recur across outer splits; they are not three independent data collections.", "Different endpoint scales make the macro MAE a collection-specific score, not a scale-free effect.", "Endpoint bootstrap omits pretraining-seed variance and does not establish architectural causation; endpoints share data sources.", "Chemistry-enabled runner hash differs intentionally from control/A1; scientific settings and cohorts were compared explicitly.", "A2 TDC and A3 downstream results are not covered. No chemical mechanism for individual gains or losses is inferred." ] }