diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000002.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000002.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3acc18c0c387362f289e05022c5cd8402785c66b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000002.fa
@@ -0,0 +1,113 @@
+>AS2_ACLBLIBL_00757
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01280
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRIAAEGTWDTVLATLTAAADAQGLVDWSVSVDSTIARAHQHATNTTRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01303
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01313
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRIAAEGTWDTVLATLTAAADAQGLVDWSVSVDSTIARAHQHATNTTRHTGGW
+IELQESA
+>AS2_ACLBLIBL_01318
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRIAAEGTWDTVLATLTAAADAQGLVDWSVSVDSTIARAHQHATNTTRHTGGW
+IELQESA
+>AS2_ACLBLIBL_02332
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_02348
+MSRFQMLSDAQWELIAPMLPTRTGRPGRPFTGARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>AS2_ACLBLIBL_02630
+MSRFQMLSDAQWELIAPMLPTRTGRPGRPFTGARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KBS0714_MOLHKGIG_01069
+MFRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRGLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KBS0714_MOLHKGIG_01387
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_00316
+MSRFQTLSDAQWELIAPMLPARTGRQGRPFADARTMVEAIIYRYRCGIPWRDLPEVYGPW
+QTVWTWHRRMAEEGTWDTVLATLTAAADAEGLIDWSVAVDSTIARAHQHATNTTRLTGGW
+IELQESA
+>KD337_NAFOICDF_00621
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRMAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+IELQESA
+>KD337_NAFOICDF_00626
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRMAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+IELQESA
+>KD337_NAFOICDF_01795
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_01837
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_02208
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>KD337_NAFOICDF_02231
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFSDARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDAVLARLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>SA211_MHAAABBN_00320
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>SA211_MHAAABBN_00332
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFSDARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDAVLARLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>SA211_MHAAABBN_00787
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>SA211_MHAAABBN_01117
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATSITRHTGGW
+IELQESA
+>SA211_MHAAABBN_01328
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>SA211_MHAAABBN_01659
+MSRFQMLSDTQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>SA211_MHAAABBN_02266
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>TT9_LFPAFLNI_00113
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+>TT9_LFPAFLNI_01019
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFSDARTMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEEGTWDAVLARLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+IELQESA
+>TT9_LFPAFLNI_01540
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW
+VELQESA
+>TT9_LFPAFLNI_01883
+MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARAMVEAIIYRYRCGIAWRDLPEVYGPW
+QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRLTGGW
+VELQESA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000003.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000003.fa
new file mode 100644
index 0000000000000000000000000000000000000000..37d9839204079d8bef99b6983719ff1ef3a75f29
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000003.fa
@@ -0,0 +1,131 @@
+>AS2_ACLBLIBL_00758
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01281
+------------------------------------------------------------
+-----------------------------------------MLLPLLGQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01304
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPAGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01312
+------------------------------------------------------------
+-----------------------------------------MLLPLLGQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_01317
+------------------------------------------------------------
+-----------------------------------------MLLPLLGQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>AS2_ACLBLIBL_02331
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_02347
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGSAGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_02614
+------------------------------------------------------------
+---------------------------------------------------MTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>AS2_ACLBLIBL_02631
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGSAGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYATIYRAAVVLNAVLAWSKALSDTP
+>KBS0714_MOLHKGIG_01068
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPIGLDADAYKG
+RNVIERQYAHLKPWRGLATRYDKYAIIYRAAVVLNAVIAWSKRLSDMP
+>KBS0714_MOLHKGIG_01386
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KBS0714_MOLHKGIG_02280
+MAAEGTWDTVLTKLTAATDAQGLVDWSVSVDSTIARAHQHATNTTGTQGDRSSDTNLREE
+PANHGVGRSRGGLSTKIHQLVDGAGMPLVNLITPGQAGDSPMLLPLLEQLRVARPVGRTR
+TRPEAVLGDKAYSSQPVRAHLRARRIKAVIPEPADPRGHRKRSGPRGGRPVGPDAAAYKG
+RNVIERQYAHLKQWRRLATRYDKYATVYRAAVLLNAVTAWSKLLSDTP
+>KD337_NAFOICDF_00317
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPAGRPR
+TRPDAVLGDKAYSSRAIRAHLRSRRIRAVIPEPADQRGHRRRRGPRGGRPVGLDATAYKG
+RNVIERRYAHLKQWRGLATRYDKYSIVYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_00625
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVISEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_01796
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARRIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_01836
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARRIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>KD337_NAFOICDF_02207
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARRIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>SA211_MHAAABBN_00319
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDAAAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>SA211_MHAAABBN_00788
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>SA211_MHAAABBN_01116
+------------------------------------------------------------
+-----------------------------------------MLLPLLAQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>SA211_MHAAABBN_01327
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>SA211_MHAAABBN_01658
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLEQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVGLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>SA211_MHAAABBN_02267
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDAAAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIVYRSAVVLNAVIAWSKRLSDMP
+>TT9_LFPAFLNI_00114
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLEQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>TT9_LFPAFLNI_01539
+------------------------------------------------------------
+-----------------------------------------MLLPLLEQLRVTRPVGRPR
+TRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDADAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+>TT9_LFPAFLNI_01884
+------------------------------------------------------------
+--------------------MDGTGLPLVSLITPGQAGDSPMLLPLLAQLRVTRPVGRPR
+TRPAAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRRRRGARGGRPVSLDAAAYKG
+RNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWSKRLSDMP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000004.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000004.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d75e31ae9be15f9a6c8c33cd11493470c1eedb9e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000004.fa
@@ -0,0 +1,226 @@
+>AS2_ACLBLIBL_00228
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------MVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_00229
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEAPKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYA----------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------
+>AS2_ACLBLIBL_00643
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEAPKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_00895
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------MVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_00899
+MT----------------DTADAQNPLAGVLSADQVDALVNAAEDLGEGRHGVEELLSRM
+TQAVLERALETEMSEHLGYEAGDPAGAGTGNSRNGKT--TKSVQTLQGPGQITVPRDRNG
+SFEPVIVPKRSRRLGRVEDMILSLYARGMTTRDIGSHLEEIYGSKVSAATISRVTDVVAD
+EVAQWQSRPLETVYPIVYIDAIWLKIRDGGVVTNKACHVAVGVDLEGRKQVLGLWLGVSE
+GAKFWANVLTEIRNRGTKDILILCCDGLSGLPAAVNSIYPETVVQTCVVHLLRSAMKYAS
+YADRKTMAKDMRPIYTAATVEAAQLALEAF-AEIWQTKAPGAVLAWRTAWEDFIPFLAFT
+PEIRKVIYTTNQIESINYQLRKITKTRGSFPSDEAAIKLVYLGIRNIETRRGGEL-----
+--------------GTGTQGWHQALNAFAVQFPNRL-P-L
+>AS2_ACLBLIBL_01506
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEAPKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>AS2_ACLBLIBL_02100
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYGKGSEDASKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_00376
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_01393
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_02069
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTP--------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------LTQTS-------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------
+>KBS0714_MOLHKGIG_02112
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KBS0714_MOLHKGIG_02277
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>KD337_NAFOICDF_01829
+MSESTTEMTGPMIDPVTGEIIDQKDLAEQ---------LLAQAKEQGVRLVGPGGLLNQL
+TKNVLETALEAELTEHLGHDHGQTPIA--ANMRNGTR--SKTVLTEIGPVEIEVPRDRDG
+SFEPVIVPKRKRRLDGTDQIVLSLSARGLTTGEIAVHFEEVYGAKVSKDTISRITEKVAG
+ELAEWSSRPLD-------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------------P-L
+>SA211_MHAAABBN_00355
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01012
+------------------------------------------------------------
+---------------------------------MGRTQWPLT----------DVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01015
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVCK----
+--RP--------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------
+>SA211_MHAAABBN_01125
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01746
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_01819
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>SA211_MHAAABBN_02016
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_00116
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01547
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01549
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01880
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+>TT9_LFPAFLNI_01974
+MT---------MIDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPAL
+VKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTT--PKTVESEVGPIELDVPRDRGG
+SFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSE
+EVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVLNRAAYIAVGVDLEGIKHVLGIWVQDTE
+GSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAVEATWPDSMVQTCVVHLIRAAMRFVA
+YQDRKKVAAALKPIYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFP
+PMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAAERARDRG
+KPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000009.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000009.fa
new file mode 100644
index 0000000000000000000000000000000000000000..52bd98a1831f04e2e5f6efd056a9952ec62deb48
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000009.fa
@@ -0,0 +1,112 @@
+>KBS0714_MOLHKGIG_00712
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>KBS0714_MOLHKGIG_01400
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>KBS0714_MOLHKGIG_01503
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVGRRPGLPAHRRRPPHRD------AHRHRPGHRR
+LGRPRYLQHRGGSPVSIHTPNTAAPAR
+>KBS0714_MOLHKGIG_02228
+--------------------------------------------------------------------------------
+---------------------------------MHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_00091
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_00344
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_01014
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_01393
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>SA211_MHAAABBN_02283
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_00607
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_01017
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_01157
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_01350
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
+>TT9_LFPAFLNI_02163
+MKDAAETMKILSAYDLTKSLRGAAELAGCSHHTVARLVRARDAGQTPGSGASRPKVTDVWLPKIEEWVEASTGRIRADVV
+HAKLTAMGYTGSERSTRRAVAEVKAAWRAGKRRVHRPWITEPGAWLQYDFGDGPAIDGAKTVLFVAWLAWSRYRIVIALR
+DRTAPSVFAALDRCFRLIGGAPTYVLTDNEKTVTVSHVAGVPVRNQATVAFARHYGVEVLTCQPADPAAKGGVENAVKLA
+KADLVPKDTNLRDQYASFAELEAACAGFMAMVNSREHRVTRRRPDHMLAEETSALHRIPATAHTVAYGVGRKVPENTPMV
+SFENAQYSVPAHLLGAEVFVRHHGTGPDSMVVIMHAGAQGPVEVARHRVARPGSPAIDDAHFPGHETDKVPGDYTPVPRS
+AAEAEFLAIGAGARTWLVEAAAAGTSRIGQKMAEAVTLAKLAGTDQVDRALGVAAVHQRFAHGDLASLLTAAGHRTGMHT
+ATEERSLTQGTAGWAGLGTSNTEGAAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000010.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000010.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8e87467b96b621706667b29e112a2be94afc3786
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000010.fa
@@ -0,0 +1,118 @@
+>AS2_ACLBLIBL_00108
+ML----------------------------------------------------------
+----------------------ILWRQRVWRCAEPGCARGTFVEQLPSLVAPRGSITTRA
+ISWAIGQLRREHGTIAGLARQLGTSWKTLWRAIRPE-LEHLADDESRFEGVTSLGVDEHI
+WHHVDRRR-----RGPRELTGMVDLSRDEHGRVRARLLDLVPGRSGKAYAGWLAERGDAF
+RRGVQVAALDPFAGYKTAIDQRLDDATAVLDAFHVVKLGTQVVDEVRRRVQQATLGHRGR
+KGDPLYGIQTILRAGAEHLTDKQLARLAAAIESDPAHEEVFVAWQCAQDLRAAYRSGNLA
+DGRAIAERLADSLHTS---PIPEVARLGRTLRRWRAAFLAYFTTNRSSNGGTEAINGIIE
+LHRRLARGFRNRDNYRLRMLLAAGGLTP-------
+>AS2_ACLBLIBL_00508
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------MVDLSRDEHGRVRARLLDLVPGRSGKAYAGWLAERGDAF
+RRGVQVAALDPFAGYKTAIDQRLDDATAVLDAFHVVKLGTQVVDEVRRRVQQATLGHRGR
+KGDPLYGIQTILRAGAEHLTDKQLARLAAAIESDPAHEEVFVAWQCAQDLRAAYRSGNLA
+DGRAIAERLADSLHTS---PIPEVARLGRTLRRWRAAFLAYFTTNRSSNGGTEAINGIIE
+LHRRLARGFRNRDNYRLRMLLAAGGLTP-------
+>AS2_ACLBLIBL_00509
+ML----------------------------------------------------------
+----------------------ILWRQRVWRCAEPGCARGTFVEQLPSLVAPRGSITTRA
+ISWAIGQLRREHGTIAGLARQLGTSWKTLWRAIRPE-LEHLADDESRFEGVTSLGVDEHI
+WHHVDRRR-----RGPKS------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------
+>AS2_ACLBLIBL_01091
+ML----------------------------------------------------------
+----------------------ILWRQRVWRCAEPGCARGTFVEQLPSLVAPRGSITTRA
+ISWAIGQLRREHGTIAGLARQLGTSWKTLWRAIRPE-LEHLADDESRFEGVTSLGVDEHI
+WHHVDRRR-----RGPKS------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------
+>AS2_ACLBLIBL_01092
+MT-------------------RSG------------------------------------
+----------------------VACRSRRW---------------------------TRS
+C-----------------------------------------------------------
+------------------------------------------------------------
+-------------GYKTAIDQRLDDATAVLDAFHVVKLGTQVVDEVRRRVQQATLGHRGR
+KGDPLYGIQTILRAGAEHLTDKQLARLAAAIESDPAHEEVFVAWQCAQDLRAAYRSGNLA
+DGRAIAERLADSLHTS---PIPEVARLGRTLRRWRAAFLAYFTTNRSSNGGTEAINGIIE
+LHRRLARGFRNRDNYRLRMLLAAGGLTP-------
+>KBS0714_MOLHKGIG_00454
+MLHPTF---ATPDLTTFCRLDELGL----VAVGQLIEPDRATIECRVVEDDPWCRKCGVE
+GVPRDTVTRRLAHEPFGHRPTTLLVRVRRYRCG--HCRR-TWRQDMTRAAAPRAKISRGG
+LEWALRGIVIDHLTVTRVAAGLGVSWSAANAAVLAEGKRRLIDDPARFDGVTTIGVDEHV
+WRHTR--------LGDKYVTVIIDLTPARNKTGPARLLDMVEGRSKAVFKQWLAARPADW
+AKRIEVVAMDGFAGFKTAAAEELPDAVPVMDPFHVVRLAGDALDVCRRRVQQDTTGHRGL
+KGDPLYKARRTLHTGASLLTDRQRARLDAVF-ASEEHIEVEATWGIYQRIVAAYREPDKK
+KAKAMMQEVIATISSGVPAALVEVRKLGRTMKQRAGDILAFFDRPGTSNGPTEAINGRLE
+HLRGSALGFRNLTHYIARSLLEAGGFRPALHPRS-
+>KBS0714_MOLHKGIG_00845
+M-----------------------------------------------------------
+---------------------------RRYRCS--GCGY-VWRQDTTASAEPRAKLSRRA
+LRWALEGIVVQHLTVARVAEGLGVAWDTANDAVLAEGKRVLIDEEHRFEGVKVVGVDEHV
+WRHTR--------RGDRYVTVIIDLTPVRDGTGPARLLNMVEGRSKQAFKTWLADRPQDW
+RDGVEVVAMDGFTGFKTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGR
+KGDPLYAARRTLSTGVDLLNDKQKDRLDTLF-ADDAHVEVEVTWSVYQRMIAAYRHENRR
+HGRELMARLIDSISTGVPKALVEITKLGRTLKKRAADVLAYFDRPSTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLETGGFRPRLHPGFG
+>KBS0714_MOLHKGIG_01392
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------MSLLTDRQEEHLSVLF-AHEKHAAVEAAWEIYQAMVAAYREFDRA
+KAKAKMEKVIAALSKKVPDTLEELGKLGRTLTKRAADVLAFFERLGTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLESGGFRPLLHPQMR
+>KD337_NAFOICDF_00630
+MPEPTLYCRARGDYCTCCDL-LVGLPGLHVLTAERDDHDRLVVTVESAPEPMGCRSCGVI
+ARGHGRIEVSLVDAPAFGRPVRIIWRKRRWLCPDPACEVGSFIEQDEKVAAPRAVLTTRA
+CRWAIEQIRREHASVNGIRRQLGTGWRTVWDSIQPL-LQAADEDPSRFEGVAILGVDEHV
+WHHVSTKPIHHGGRGPKELTGMVDLTRDEGGRTRARLLDLVPGRSGRVYKDWLDQRGDAF
+RARIEVATLDPFHGYKNAIDDQLEDARSVLDAFHVVKLATTVVDDVRRRVQQQIHGHRGR
+KSDPLYRVRNVLRAGAENLTDRQRDRLETAWAAHEQHIEVEIAWLCAQKVRSAYRQGTHA
+AGRAVAEKILATFTSC---PIPEVARLGKTLNRWRREFLGYFDTNGASNGGTEAINGLIE
+LHRRIARGFRNRDNYRLRMLLIGGGLDMTHHTQR-
+>KD337_NAFOICDF_00638
+MPEPTLYCRARGDYCTCCDL-LVGLPGLHVLTAERDDHDRLVVTVESAPEPMGCRSCGVI
+ARGHGRIEVSLVDAPAFGRPVRIIWRKRRWLCPDPACEVGSFIEQDEKVAAPRAVLTTRA
+CRWAIEQIRREHASVNGIRRQLGTGWRTVWDSIQPL-LQAADEDPSRFEGVAILGVDEHV
+WHHVSTKPIHHGGRGPKELTGMVDLTRDEGGRTRARLLDLVPGRSGRVYKDWLDQRGDAF
+RARIEVATLDPFHGYKNAIDDQLEDARSVLDAFHVVKLATTVVDDVRRRVQQQIHGHRGR
+KSDPLYRVRNVLRAGAENLTDRQRDRLETAWAAHEQHIEVEIAWLCAQKVRSAYRQGTHA
+AGRAVAEKILATFTSC---PIPEVARLGKTLNRWRREFLGYFDTNGASNGGTEAINGLIE
+LHRRIARGFRNRDNYRLRMLLIGGGLDMTHHTQR-
+>KD337_NAFOICDF_00839
+MPEPTLYCRARGDYCTCCDL-LVGLPGLHVLTAERDDHDRLVVTVESAPEPMGCRSCGVI
+ARGHGRIEVSLVDAPAFGRPVRIIWRKRRWLCPDPACEVGSFIEQDEKVAAPRAVLTTRA
+CRWAIEQIRREHASVNGIRRQLGTGWRTVWDSIQPL-LQAADEDPSRFEGVAILGVDEHV
+WHHVSTKPIHHGGRGPKELTGMVDLTRDEGGRTRARLLDLVPGRSGRVYKDWLDQRGDAF
+RARIEVATLDPFHGYKNAIDDQLEDARSVLDAFHVVKLATTVVDDVRRRVQQQIHGHRGR
+KSDPLYRVRNVLRAGAENLTDRQRDRLETAWAAHEQHIEVEIAWLCAQKVRSAYRQGTHA
+AGRAVAEKILATFTSC---PIPEVARLGKTLNRWRREFLGYFDTNGASNGGTEAINGLIE
+LHRRIARGFRNRDNYRLRMLLIGGGLDMTHHTQR-
+>SA211_MHAAABBN_01124
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------MSLLTDRQKEHLSVLF-AHEKHAAVEAAWEIYQAMVAAYREFDRA
+KAKAKMEKVIAALSKKVPDTLEELGKLGRTLTKRAADVLAFFERLGTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLESGGFRPLLHPQTR
+>TT9_LFPAFLNI_01343
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------MSLLTDRQKEHLSVLF-AHEKHAAVEAAWEIYQAMVAAYREFDRA
+KAKAKMEKVIAALSKKVPDTLEELGKLGRTLTKRAADVLAFFERLGTSNGPTEAINGRLE
+HLRGSALGFRNLTNYIARSLLESGGFRPLLHPQMR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000011.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000011.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9ca1bc7cfbdaf8e673d1d06cd3888a850b1f8706
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000011.fa
@@ -0,0 +1,53 @@
+>AS2_ACLBLIBL_00719
+-----------------------MLTITSRLEVMNRLGRAMADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>AS2_ACLBLIBL_00727
+-----------------------MLTIASRLDVMNRLGRAMADPTRSRILMTLLEGPSYP
+AVLARDLGLTRSNVSNHLTCLRDCGIVVAEPEGRQTRYEIADPHLGAAMTALVEVTLAVD
+ENAPCVDATCTVPGCCPSGTVA-
+>AS2_ACLBLIBL_02366
+-----------------------MLTVASRLDVMNRLGRAMADPTRSRILMTLLDGPSYP
+AVLSRELELTRSNVSNHLTCLRDCGIVVAEPEGRQTRYEIADPHLAAALTALVDVTLAVD
+EHAPCVDSSCTVPGCCGTGAGE-
+>KBS0714_MOLHKGIG_00609
+-----------------------MLTIATRLDVMNRLGRAMADPTRSRILLNLLEGPGYP
+AELAQALGLTRSNVSNHLACLRDCGIVAAEHQGRRTRYAIVDAHLARALSALLEVTLAVD
+ASAPCLDPGCPVPGCCDTGQVAS
+>KBS0714_MOLHKGIG_00616
+-----------------------MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>KBS0714_MOLHKGIG_02074
+----------------------------------------MADPTRSRILMTLLERPAYP
+AELARDLGLTRSNVSNHLACLRDCGIAVAVAEGRQTRYEIADAHLARALTALVEVTLAVD
+ESAPCIDPACSLPGCDAAGEGA-
+>SA211_MHAAABBN_00339
+-----------------------MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>SA211_MHAAABBN_00350
+MQMCRYQQREPHTRGQQVLYAQRMLTIASRLDVMNRLGRAMADPTRSRILMTLLEGPSYP
+AVLARDLGRV--------------------------------------------------
+-----------------------
+>SA211_MHAAABBN_00789
+MQMCRYQQREPHTRGQQVLYAQRMLTIASRLDVMNRLGRAMADPTRSRILMTLLEGPSYP
+AVLARDLGHV--------------------------------------------------
+-----------------------
+>SA211_MHAAABBN_01769
+-----------------------MLTIATRLDVMNRLGRAMADPTRSRILLSLLEGPGYP
+AELAQALGLSRSNVSNHLACLRDCGIVAVEHQGRRTRYAIVDAHLARALSSLLEVTLAVD
+ASAPCLDPGCPVPRCCDTAEVAS
+>SA211_MHAAABBN_01779
+-----------------------MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYP
+AELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVD
+EDAPCIDPACSLPGCDAAGEGA-
+>TT9_LFPAFLNI_02002
+----------------------------------------MADPTRSRILMTLLERPAYP
+AELARDLGLTRSNVSNHLACLRDCGIAVAVAEGRQTRYEIADAHLARALTALVEVTLAVD
+ESAPCLDPACSVPGCCEKGVGA-
+>TT9_LFPAFLNI_02005
+M----------------------STTTLTHVSALSRLGHALSDDTRTRILLALRDGPARP
+SALAGELGVSKQVMSNQLACLRGCGLVTTTAEGRNVWYALADPRLGQTLGELLELTLTID
+PD------CCSAAGCTCA-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000015.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000015.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3b2600ecc3fc35baf24c1b8e2fb8e5372db5206e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000015.fa
@@ -0,0 +1,91 @@
+>AS2_ACLBLIBL_01106
+-----MTERPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAWLD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGAGGVRPTDETVDYPVQAVYRAVGYFGSPLDGVEFDAARGVVPNDEGRVLDA
+DGVPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDVDGLWTAQDPAEESVIDLLEA
+REVPYTTWEGWQALDAHEKSLGAQATEAGPVERERVKVVDREEMTRISREGAWAPTA-
+>AS2_ACLBLIBL_01897
+MTLTPSSPKPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAWLD
+VPGVELAGSYGGADFASWYDGHPDVPRHWPLDATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDREQSASRRLHLHFLQAPEQFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPLDGVEFDAARGVVPNDEGRVLDA
+DGVPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVRYTTWAGWLALDDHEKALGVQATEAGPVERERVKVVDREEMTRISRESVLLGAGG
+>KBS0714_MOLHKGIG_00992
+--MTPTPSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEQFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWRAQEPSEESVIELLES
+RGVPYTTWAGWHALDEHEKSLGVQATEAGPVARERVKVVDREEMTRISREGVLLGAGG
+>KBS0714_MOLHKGIG_01771
+-----MTVRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAVLD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRDGASVPTA-
+>KD337_NAFOICDF_01032
+-----MTERPDRPLRIAVVGAGPAGVYTADILTKEERDFQVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFIGNVDVGTTVSLEDLRRLYDVVVFTTGAVRDAALD
+VPGVELEGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+VTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRTEQASRRLHLHFLQAPEEFLDADGDGRVDGL
+RMRRMELDGQGGITPTDETVDYDVQAVYRAVGYFGSPVPGVEFDDVRGVIPNAEGRVLDA
+AGHPVPGLYTSGWIKRGPVGLIGSTKGDSLETIKHLIEDEPGLYTAEDPSEQAVLDLLAE
+RGVDYTTWEGWHALDAHEKALGAEATQAGPVERERVKVVDRAEMTRISRAGTGLA---
+>KD337_NAFOICDF_01844
+MTPTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEQAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEQFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETITHLIEDEPGLWRAQEPSEESVIELLES
+REVPYTTWAGWHALDDHEKSLGAQATEAGPVARERVKVVDREEMTRISRKSILLGAGG
+>SA211_MHAAABBN_00706
+MTLTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDA
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTDETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRESVLLGAGG
+>SA211_MHAAABBN_01478
+-----MTVRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAVLD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRDGASVPTA-
+>TT9_LFPAFLNI_00935
+MTLTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFASWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTDETVDYPVQAIYRAVGYFGSPVEGVEFDEVRGVIPNAEGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRESVLLGAEG
+>TT9_LFPAFLNI_01700
+-----MTARPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV
+APDHPRIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD
+VPGVELAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLL
+PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE
+ASEKAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL
+RMRRMELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAQGRVLDA
+DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETIKHLIEDEPGLWTAQEPSEESVIELLES
+REVPYTTWAGWHALDDHEKSLGAQATEAGPVARERVKVVDREEMTRISRDGASVPTA-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000016.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000016.fa
new file mode 100644
index 0000000000000000000000000000000000000000..db54a3c038875ffde049bfe92f746cbaf8557558
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000016.fa
@@ -0,0 +1,80 @@
+>AS2_ACLBLIBL_01238
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELDDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKKGIEVAVAAVEQRLQENARPVEGK-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDPYVLINSGKISNVQELLPVLEKVLQ
+ASRPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMLQDIAVLTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGSAEDVEARVAQIKAESAATDSDWDREKLQERLAKLAGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALSVLDTDADVQALTGDAASGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKPEDEDE------------HQH
+>AS2_ACLBLIBL_02606
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVDAVTAELLSASREIETKEQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGTARK
+VVITKDETTIVEGAGDAEQIAGRVAQIRAEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLTLEGDEATGANIVKVAIEAPLKQIAFNAGMEPGVVADKVKTLQDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>KBS0714_MOLHKGIG_00355
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGSARK
+VVITKDETTIVEGGGDAEQIAGRVAQIRSEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKTLDDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>KBS0714_MOLHKGIG_01656
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKRGIEVAVAAVEQRLQENARPVEGK-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVVQ
+ANKPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGAPEDVEARIAQIKAEAAATDSDWDREKLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALTVLDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANATSIAALVLTTETLVADKPADEDEA----------GHQH
+>KD337_NAFOICDF_01149
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIARDVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPNEVKKGIETAVAAVEKRLQENARPVEGK-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGYLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQ
+ANKPLFVIAEDVEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGATVVSPDLGMKLEQADLDVLGSARR
+VTVTKDATTIVDGGGEAADVEARVSQIKAEVAATDSDWDREKLQERLAKLAGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALSVLDEDAEVTALTGDAATGVEIVRKALKEPLRWIAQNAGEDGYVVVSKVAEMKPNEGFN
+AKTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKVEDEDE------------HQH
+>KD337_NAFOICDF_02465
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPISLKRGIEKAVEAVTSELLSAAREIETKDQIAATASISAADAQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISTVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENASLDLLGTARK
+VVITKDETTIVEGAGDADQIAGRVAQIRSEIANTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFEGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKSLESGHGLN
+AATGEYVDLMAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>SA211_MHAAABBN_00071
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPCGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGTARK
+VVVTKDETTIVEGGGDAEQIAGRVAQIRSEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKTLDDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>SA211_MHAAABBN_01361
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKKGIEVAVAAVERRLQENARPVEGQ-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQ
+ANKPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGAAEDVEARVAQIKAESAATDSDWDREKLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALTALDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANATSIAALVLTTETLVADKPADEDEA----------GHQH
+>TT9_LFPAFLNI_00362
+MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT
+DDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIEKAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLI
+AEALDKVGKEGVITVEESNTFGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ
+SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVISSEVGLSLENATLDLLGTARK
+VVVTKDETTIVEGGGDAEQIAGRVAQIRSEIENTDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRN
+AKAAVEEGIVAGGGVALIQAGA---KAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADKVKTLDDGHGLN
+AATGEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMGGMM
+>TT9_LFPAFLNI_01586
+MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVELEDPYENMGAQLAKEVATKT
+NDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKKGIEVAVAAVERRLQENARPVEGQ-EVAHVAAISAQNDEVGELL
+ARAFDTVGTDGVITIEESSTTSTELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQ
+ANKPLFVIAEDVEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSPDLGMKLEQADLDVLGSARR
+ITVTKDETTIVDGGGAAEDVEARVAQIKAEAAATDSDWDREKLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSS
+TRAALEEGIVAGGGTALINALTVLDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGFN
+AKTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKPADEDEA----------GHQH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000018.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000018.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5dfa593da608fbe9a468cf5764f14bc3d3654f43
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000018.fa
@@ -0,0 +1,28 @@
+>AS2_ACLBLIBL_02275
+MPAPYPQEFRDEVVRVAQNREPGTQLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>AS2_ACLBLIBL_02497
+MPAPYPQEFRDDVVRVAQNREPGTHLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>AS2_ACLBLIBL_02616
+MPAPYPQEFRDDVVRVAQNREPGTHLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>AS2_ACLBLIBL_02634
+MPAPYPQEFRDDVVRVAQNREPGTQLKQIAKDFGISFSCLTNWMRQAEIEAGNKPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>KD337_NAFOICDF_01886
+MSKPYPKEFRDDVVRIARNREPGVELSQIAKDFGIHFTTLYAWMKKADIEDGDRPGTTEA
+QYAELREAKRRIRTLEQEVEVLRRAAAYLSQAHLPGK-----
+>SA211_MHAAABBN_00342
+MPAPYPQEFRDDVVRVARSREEGVTLAQIAKDFGTHEMTLSKWMRQADVEDGAKPGTTKA
+ESAENRELKKRIRLLEQENEVLRRAAAYLSQANLPGKGSTRS
+>SA211_MHAAABBN_01766
+MPAPYPKEFRDDVVRVAQNREPGTHLKDIAKDFGISESCLTNWIRQADIEAGNIPGTTKA
+EAEELRAARRRIRLLEQENEVLRRAAAYLSQANLPKK-----
+>TT9_LFPAFLNI_00899
+MSKPYPKEFRDDVVRVARNRGPGVELSQIAKDSGIHVTTLYAWMKKADIEDGDRPGTTEA
+QSAELREAKRRIRTLEQEVEVLRRAAAYLSQAHPPGK-----
+>TT9_LFPAFLNI_01543
+MPGPCPREFREDVVAVARSRESGVTIKQIATDFGVSEATLQNWLRQADVEDGNRPGQTAA
+DAAEARELKKRIRLLEQENEVLRRAAAYLSQANLRLGGSPK-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000022.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000022.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fa9c5901746ecf1c70436a6ea373df113bd2661c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000022.fa
@@ -0,0 +1,57 @@
+>AS2_ACLBLIBL_00513
+MANDDANTTTTDQLTLQDPVKRYPVISPPEQSLPGTGLDAEMTPKADLGEHSYRGTGRLT
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDARNVLAVLEKEGRTAVGIAGD
+LRDRQFCQDVVA----QAVE--AMGGLDVLVNNGGKQVAQKEFEAIDDEQLEATFDVNIL
+AQFRLVRAALPHLKP---GASIINTTSVVSYMPPETLIDYASTKAAINNFTKGLGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQPTEELPDFGQSTPLGRAGQPTELAPAFVFLASAESSY
+VVGATIAVTGGMPTP---------
+>KBS0714_MOLHKGIG_02238
+MAHDDANTTTTDQLTLQDPTKRYPVISPPEQSLPGTGLDAEMTPKVDLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAVGIPGD
+LRDKTFCVDLVA----QAVE--KLGGLDVLVNNGGKQVAQDSIEDIDDEQLEATFDINIL
+AQFRLVKAALPHLKP---GSTIINTTSVVAYMAPEQLVDYSATKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+>KD337_NAFOICDF_00440
+MTDVSTSTDTAVG-------------------------DSDTRPAAART-DAPAATVLLA
+GRAALVTGGTLGIGSGIAASLRDAGARVAVTGLTEQECAAAR------EAGFPAYVL--D
+VRDRAACAEVVG----AVVE--EFGGLDVLASNAGI-YPQARIADMTDEDIDLIFDVNVK
+GTIHAVQAALPALVASGRGRVVITSSITGNHTGYPAWSHYGATKAAQLGFVRSAAIELAR
+QGVTVNAVLPGNIITPGLEEMGQ--EYLDSMARSVPAGHLGEPADIGATVAFLASDGARY
+ITGQGIVVDGGQILPETPEALEGL
+>KD337_NAFOICDF_00454
+MANDDTNTTTTDQLTLQDPTKRYPVISPPEQSLPGTGLDAEMTPKADLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVLTYLPEEEKDAQHVKEVIEAEGRKAVTVSGD
+LRDKQFCKDLVE----RAVQ--ELGGLDILVNNGGKQVAQEEFEQIDDEQLEATFDINIL
+AQFRLVRAALPHLKP---GSTIINTTSVVAYMAPEQLVDYSSTKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+>KD337_NAFOICDF_00650
+M-----------------------------------------------------------
+-----------GI------------------HYARDSTAAEAVVERVNEAGASGVLIRAD
+LAEGAAGAAHLATRWRDEVRRHDARGTDVLVSNAGINGAQ-SLSELDEGTVARVVNVNLV
+APLMLVHHLSDHIND---HGRVIGISSGFARIAAPTHVAYTASKAGLEAAFRAIAAELAE
+RDITVNTVRPGVIDTDINADWINEPGARDAVAAAAALRRVGQPDDVADIVAFLASHSSRW
+MTGQSLDATGGTQL----------
+>KD337_NAFOICDF_01865
+MSTHD----------LPDPLTQFPRFAPERQTQEEPGLSARMDPEPDCGEDTYVGIGRLK
+GRRALVTGGDSGIGRAVALAYAREGADVVFTHLPEEAEDAARTTELLDAEGVRHVAREVD
+LRDEAATRALVR----DAVK--FLGGLDLIANVAGEQRYVDDLAELDPRQVRDTFEINVF
+ALIWIVQEALPHLPA---GAAIVNTASTQATTPLPGLVDYAGTKGAIVSITKALAQQLTP
+RGIRVNAVVPGAIWTPIQVSLGRAPEQVDVLGQDAPLGRPGQPAEMAPAYVFLASTEASY
+VSGEVLGATGGTLY----------
+>SA211_MHAAABBN_01940
+MAHDDANTTTTDQLTLQDPTKRYPVISPPEETLPGTGLDAEMTPKADLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAVGIPGD
+LRDKTFCVDLVA----QAVE--KLGGLDVLVNNAGKQVAQDSIEDIDDEQLEATFDVNIL
+AQFRLVKAALPHLKP---GSTIINTTSVVTYMAPPQLVDYASTKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKSEDLPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+>TT9_LFPAFLNI_02170
+MAHDDANTTTTDQLTLQDPTKRYPVISPPEETLPGTGLDAEMTPKADLGEKSYRGTGRLE
+GRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAAGIPGD
+LRDKTFCADLVA----QAVE--KLGGLDVLVNNGGKQVAQDSIEDIDDEQLEATFDINIL
+AQFRLVKAALPHLKP---GSTIINTTSVVAYMAPEQLVDYSATKAAINTFTKALGQQLAP
+KGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSY
+VVGATIPVTGGMPTP---------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000024.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000024.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cbf9f7c412aa6e212bbaf625951a0a8c39dcec7c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000024.fa
@@ -0,0 +1,73 @@
+>AS2_ACLBLIBL_02374
+MPSASPSSPAARRARAHPVARRDVVRARWAATLAFLTNGGMLGALIPHYPQAKAAFGLDA
+DAFGLLVVALAAGAAAAGSLPAPVLRRWGSRRVMLAGTVVMAVVVVAAGLVVDLSAPAQG
+R------PWAGAVWLFAALLGVAGILDAVVDTAQNAQGLTVQTRLARPVLTSMHAGWSLG
+AGLGAGLGALAVGAGMPAGLHLGLNGAACVAVLVAAGRRFLPD------------DARPA
+P-----DADAPEGTAAPAPGPSP-------------------------------------
+-----------------------------RRPAR----------------PPPPRP-APP
+---------------------------PGWPC----------------------------
+-----------------------------SP---
+>AS2_ACLBLIBL_02375
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------MAGFGVEEFGNAWTALFLQSERGLDV
+AAAGLGASTLLLAQFVGRLVGDRVLHRLGRRRTLAGSLAVVVAALVLVLTAP-----AAP
+AVFAGLALAGLGCAVVVPTAYALGDEVPGLPPRTGLAVVSWLMRVAGIGLSPLVGLLATG
+LPLPAALAVFPALAVLGLVGTGVVGRRRRRP---
+>KBS0714_MOLHKGIG_00570
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------MHAGWSLG
+AAAGAGLGAAVITVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPVDSASARGAADQSPA
+PS-ETSAPPAPAAQALP--RRAAVAVLVPAVVIAMAGFGVEEFGNAWATLFLITERGLDP
+AAAVLGASTLLGAQFVGRLAGDRTLAVLGRRGALTAGLGAVVVGLGLAL-APLPGPVAVP
+AAFAGLALAGLGCAVVVPVAYALGDEAPGLRPQTGLAVTSWCMRLAGVGLSPAVGALAGA
+VGLAPALTVFLGLAAVGTVLAARLPA---AP---
+>KBS0714_MOLHKGIG_00571
+MSEAPPHLPTADDGVAR------ARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDP
+AAFGLLVIALAVGGTLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDIAGAGAG
+AGHGAGTAAAWLLWVFAGLVLASGVLDAVVDTAQNAQGLQV-------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------
+>KD337_NAFOICDF_02254
+MTSAPADTPR--------IDRRAATRSRWAATAAFFTNGALAAAMIPHYPQAKAAFGLDP
+AGFGLLVTVMTLGAACAGPAGAPILRRAGSRATVLWGSLAIAVVLTGAGLALDLGARSDA
+AG-----PWLGA---YAAAVFASGLCDAVVDTAQNAQGLRAQHALGRPVLTSMHAGWSLG
+AAVGAALGAAAVGAGVPAGLHLGLNGAACVLLLALTLPRFLPDTP----------DHAPA
+PALLTADDPGPESEATPASHRHPWLLLAPIVVISMAGFSVEEFGNSWTSLFLQAERGLDP
+ATAGLGASTLLGAQFLGRLTGDRVLAALGRTRALTGGLAVVLAGLTVTLLVP-----TPA
+AMFTGLALAGLGSAVVVPTAFALADEVPGLPAQTGLAVVSWLMRLAGLGLSPLVGLLAGV
+LPLTAALGAFVVLAALGTVLALTLRAPRLAPDFR
+>SA211_MHAAABBN_00294
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------MHAGWSLG
+AAAGAGLGAAVITVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPVDSASARGAADQSPA
+PS-ETSTPPAPAAQALP--RRAAVAVLVPAVVIAMAGFGVEEFGNAWATLFLITERGLDP
+AAAVLGASTLLGAQFVGRLAGDRTLAALGRRGALTAGLGAVVVGLGLAL-APLPEPVAVP
+AAFAGLALAGLGCAVVVPVAYALGDEAPGLRPQTGLAVTSWCMRLAGVGLSPAVGALAGA
+VGLAPALTVFLGLAAVGAVLAARLPA---AP---
+>SA211_MHAAABBN_00295
+MSEAPPHLPTADDGVAR------ARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDP
+AAFGLLVIALAVGGTLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDIAGAGAG
+AGHGAGTAAAWPLWVFAGLVVASGVLDAVVDTAQNAQGLQV-------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------
+>TT9_LFPAFLNI_00572
+MSEAPPHLPTADDGFAR------ARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDP
+AAFGLLVIALAVGGTLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDIAGAGAG
+AGHGAGTAAAWPLWVFAGLVLASGVLDAVVDTAQNAQGLQVQTRLARPVLTTMHAGWSLG
+AAAGAGLGAAVITVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPTDSASARDASDQSPA
+PS-ETSTPPAPAAQALP--RRAAVAALLPAVVIAMAGFGVEEFGNAWATLFLITERGLDP
+AAAVLGASTLLGAQFVGRLAGDRTLAALGRRGALTAGLGAVVVGLGLAL-APLPGPVAVP
+AAFVGLALAGLGCAVVVPVAYALGDEAPGLRPQTGLAVTSWCMRLAGVGLSPAVGALAGA
+VGLAPALTVFLGLAAVGAVLAARLPA---AP---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000025.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000025.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7024b0cff13eac6b47460e19d699ed63a66d0915
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000025.fa
@@ -0,0 +1,56 @@
+>AS2_ACLBLIBL_00109
+MPESTAVRSRLLSGAPRRARRSSSPDEES---LGPAGRWRAFWAAGPLSRVYLVAGSVLLLVSAASDLGLIGGGAFATAP
+LD-----VAVIVSTTAAFLAQWWR----STVGFALLVPAGAATIAGGTEALVTLVTAAMLAAVTV---------TARSWA
+FVVAAATLALAWGVVRPV--------ASGRPS-EAWFVLALMTAALGVGLFIRESVARRERDRRRILEA------EERAR
+LAAER---ERRSLARDLHDVVAHNLTIISMQARTAQYL--GTPEAAQSVLAVVGDSAKDALVDLRRMLAILQEDGIVDPA
+GEPGAAGGADGATSADLALTAGRMAAELRSLGMSVEQDLR-FDPEAVPMSVRSALHRVLQEATTNAAKHAGTGAEVRIMV
+AEQGRDVVLEVENS--------VAAP-----QRSMRWNSSGVGLQSMRDRVATFGGTLEAGP-GGRGWLVRAAIPRAPEG
+A---------------------------------
+>AS2_ACLBLIBL_00590
+M--------------------------------------------AGVELAYL------------SDFISEMPWRHGVGW
+-------VALGAAV-LALPLAWRRRFPVTVMLTISVLYIALASWVG--IELYASQVVLFLGFYSVGAWCPDRRRALWSRT
+AVAAAMAVWLGWVTVDGFTDPEVGERGVNAYA-AVAAIQFLVNLAYFSGAWIFGDRAWREAIRRQRLEAAHAEIRAQQAR
+IAAQEVSLERLRIARELHDVVAHHVTAMGVQAGAARLTLDRDPEAAAGHLRGIESSAREAVAELKTMVHTLR-DADAAPD
+SLPRLADLED------LVAQAVRLGTDARLTRVGPEPRLG--------APAELALYRVAQEGLTNARRHAGPRAAVEVRL
+RTEPERVELEVSDDGRARPDAEAGSERSPGGAGGAVPAGTGLGLVGMAERMASVGGTVRCGPKPGGGWLVRASVPTLPEP
+GEDAAWDAPDEPAPAPDETVQPETMPDPTTEATR
+>KBS0714_MOLHKGIG_00260
+MPDSSPSTPSVRSGAPSRARRSSAWRQAR------SLRWRAFWAAAPLSRVYLAFGSAFLLASTASDIGLFGPGHGAIPV
+LD-----GIAIASATSAFLAQWWR----STVGFALLLPGAVATVVGGSEVLFAVVAPVVLGAVAA---------TARSWG
+FVVTAAVLALTWGVAQPF--------AVGQSN-ATWFILLLMSMGLGGGLFIRESLARRERDRRRVFEA------EERAR
+LAAEA---ERRSLARDLHDVVAHNLTIISMQARTARYL--GAPEAAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPS
+GEPGAAGGADGATSADPVLSVAQLAEELRSLGMTVETDVR-CDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVCIEL
+RDAGPDVVLEVENT--------VTER-----SGPPQWNSSGVGLNSMRDRVATFGGTIEAGP-GGWGWRVRAVLPRSV--
+----------------------------------
+>KD337_NAFOICDF_00077
+M---------------SRARLGSTLRSLLDPVSPPAGGRVRFWDAAPANRVYLVVGSVFSVASTTSDVMIELGRGGGDTR
+AD-----IAFMVLACLAFLAQWWR----TTVAYAVVLLLMAASLVGGDAVSVVLVLPFVLGTVVA---------TAQSGR
+YLLAAGATALAWVVAVSLV-------GSGKVDGVAWLTLLLVVVGLGVGASIRAAKLQRVQDGRRIAEA------ERLAR
+EAAER---ERRILARDLHDIVAHNLTIIAMQANAAQYL--GTPEAAQQVVRVVGESARDALTDLRRMLSILQEDGVVEPA
+PTPGTPETDDAATVAQLGPGAERLAEELRLAGVDAAVRVE-LGEVGLNLGVRAALYRVMQESVTNVAKHAGPGQACEISI
+EARGGEVVLEVVNT--------LPED----GPRSVVGNSSRVGLTSMRDRIEAFGGRLEVGPCGGDRWRVRAAVPR-PEA
+----------------------------------
+>KD337_NAFOICDF_00524
+M----------------------------------------------------VGG--LLLVWETADLALGAAGRPGGGL
+LDSADALFSLGTGVTLVLALAGAR----ALMGCYTLL--VLSALASGFYALPVVTVGLAMGFAAL----------YLSRT
+PLVVFSCTLLATTVLTAAL-------RPDHLD-VLPLMLVPALAGTAVGLLLRRESVSLERARRRNLEL------VEARD
+RATAD---IRRSLARDLHDVVAQDLAVLAMQTQAIRVA--PDRAAQQRMADAVADVARQAHANLRGLLQVLYAGTDVDAR
+RGTGTPDALDTALVTSSAQAARDAAARLRAHGFDVDLQVQEQDGVRAPRHVDATVHRIAHEAVTNVVKHAPAGGACQVLF
+TLSPGQVRLRVLSE--------LSPAQHPGRPRDAPQPDGSFGVLNIRERAGLLGGRADVGPREG-RWHVDVRIPFGVPA
+----------------------------------
+>SA211_MHAAABBN_02273
+MPDSSPSTPSVRSGAPSRARRSSAWRQAR------SLRWRAFWAAAPLSRVYLAFGSAFLLASTASDLGLIGPGLGAIPV
+LD-----GIAIASATSAFLAQWWR----STVGFALLLPGAVATAAGGSEVLFAVVAPVVLGAVAA---------TARSWW
+FVVTAAVLALTWGVAQPF--------AVGQSN-ATWFILLLMSMGLGGGLFIRESLARRERDRRRVFEA------EERAR
+LAAEA---ERRSLARDLHDVVAHNLTIISMQARTARYL--GAPEAAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPS
+GEPGAAGGADGATSADPVLSVAQLAEELRSLGMTVETDVR-CDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVCIEL
+RDAGPDVVLEVENT--------VTER-----SGPPQWNSSGVGLNSMRDRVATFGGTIEAGP-GGWGWRVRAVLPRSV--
+----------------------------------
+>TT9_LFPAFLNI_00258
+MPDSSPSTPSVRSGAPSRARRSSAWRQAR------SLRWRAFWAAAPLSRVYLAFGSAFLLASTASDIGLFGPGHGVIPV
+LD-----GIAIASVTSAFLAQWWR----STVGFALLLPGAVATVVGGSEVLFAVVAPVVLGAVAA---------TARSWG
+FVVTAAVLALTWGVAQPF--------AVGQSN-ATWFILLLMSMGLGGGLFIRESLARRERDRRRVFEA------EERAR
+LAAEA---ERRSLARDLHDVVAHNLTIISMQARTARYL--GAPEAAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPS
+GEPGAAGGADGATSADPVLSVAQLAEELRSLGMTVETDVR-CDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVCIEL
+RDAGPDVVLEVENT--------VTER-----SGPPQWNSSGVGLNSMRDRVATFGGTIEAGP-GGWGWRVRAVLPRSV--
+----------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000030.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000030.fa
new file mode 100644
index 0000000000000000000000000000000000000000..86cae0aaafb3f47bc00cf27146dfd1e1aefee239
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000030.fa
@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_00389
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGVTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLVQSPK
+>AS2_ACLBLIBL_00393
+MPAAYHREFRQDVIAIARKGQMPIAQVAKDFGIAESRLRRWLAQDDVEAGIRPGVTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLVQSPK
+>AS2_ACLBLIBL_00410
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGVTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>KBS0714_MOLHKGIG_00627
+MPAAYPREFRQDVVAIARKGQIPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>KD337_NAFOICDF_02189
+MPAAYPREFRQDVVAIARNGQMPIAQVAKDLGITASCLRRWLAQDDVEAGIRPGLTKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>SA211_MHAAABBN_00372
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+>TT9_LFPAFLNI_00604
+MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN
+EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000033.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000033.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1c25fdb92be91d9132b7961e3d02effef99a294e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000033.fa
@@ -0,0 +1,56 @@
+>AS2_ACLBLIBL_00403
+MT-----------GRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFREHLEPA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGEQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLGNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQAHGGTLSATSTT--AGATFTIDLPTKQPPDQPTYRRTRSSTVNTGAP---PLA
+>AS2_ACLBLIBL_01253
+M-------------RTRLSTLLALVLVLSLAVSGITAYAVLRITVNDRIEASLQRAVEQVALLSETGVDPETGEPPDSAA
+AFIRLAMLRVLPHDNEGILG---LAPDRAELAASDAVELRLEEDPELVAWALARVGDQEARAETVTTASATYRAVVVPVT
+GWGQDDAGALLLAVDVDAEVGRLDRTFLGFAGGALLTTVFALAVGVPLLRRVFAPLESLQEAVGEVTEHDLDRRVEVIGH
+-DDVAALGHSFNAMLER-----LEDSFASQRRLLDDAGHELRTPVTIVQGHLEVMDPDDPADV----RETTRLTLDELDR
+MSRLVDDLLVLAKAQHPDF-LRPAPVDV--AELTRGVL-----ARASGFDGHVWELDGV-AEATVSLDAQRITQAWLQLA
+AN---AVRYSEPGS-----------------VVRLGSAVEGDTLRLWVQDHGVGVRPEDRAQIFERFGRGAHGTRAD---
+------GSGLGLAIVSSIAAAHGGEVSLDSVPG-LGSVFRIELPLSTPSRPAG----------SLTPGKDP-A
+>AS2_ACLBLIBL_01330
+MTRSKPTGRLSASGRARVVAWILGVSALGMVLMLVSIVLTLRWVERDAIETSLTQESDEVAVFAQNGRDPETGEPFATPE
+RFVGHYLERQRVEPTELMFGGTAATPVIAQIHGDAA------APVELLAPATRQ-AMEQPRSRGTLVDPTHGRISYANLT
+VTTPADTGHVVVAVFHERYEQRVMTQTLLLSALALAALAATAAAAWLVSSRILGHTVEFHRAVDASLKDRGLRRLPENGS
+-EEYAGLARRANDLVRR-----ADRRLEEERRFAEDVTFALRTPLTVIEGGL-----RNPGGDEQERRTSYRHIGAEATR
+VRGLLEDLVILSRLQQDDVVLERTPVDV--GVLVATAAQAWRERHPDAADEPRLDVEAPAEGLTAVTDRARLVQVLEELL
+DNARHAVRFAPGSDLPRDLTAVTPLERTLSVRVREEERDGEPWAVVEVADRGRGIPEEDREEVFERLANASNDPYP----
+------GNGLGLPVAALLSTALDGELTLEPGPGAAGTVARLAVPLTADQDGEDA-------------------
+>KBS0714_MOLHKGIG_00631
+MT-----------GRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFHEHLEQA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGEQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLGNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQTHGGTLSATSTT--AGATFTIDLPTKQPPTSPP----------TGAPVYPP--
+>KD337_NAFOICDF_00451
+M-------------------------------------------------------------------------------
+------------SPTPALRGRPAPGP-----------------DAALVARAARRIGLRTALACAALVLGGAG--VFFGY-
+-------------------------------------------LWWQIAHPGVDPRDA--DATVTVQLDLVDLATAAILA
+GAAAVLITGFASLWFSRSAVQPLADALRRQREFVSNASHELRTPLTVLSARTQVLQARVPAGDPL--EPLADELRRDTDV
+MAGVVEDMLSTAR-------LDSAPEGMCDAGEVAAAACA--DLSLVGAEERGVRLRADLPSLPVALPEAALRRMLAALL
+DN---ALGFAPPGT-----------------EVTVSGERVRGVVELRVADRGAGIQGVEPDHVFDRFARGRPAAVPGSGP
+GAVPRSSHGIGLALVRETAHRYRGEVRVESTGP-EGTVMLLTLPAAQEAR-----------------------
+>KD337_NAFOICDF_02198
+MT-----------SRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFHEHLEQA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGGQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLDNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQTHGGTLSVTSTT--AGATFTIDLPTKQPPDQPTYRRTRLSTVNTGAP---PLE
+>TT9_LFPAFLNI_00600
+MT-----------GRRRYQGLAARFFLAQLLVVGASVLAAV-------VVASL---------------------------
+-----------------------AGPPLFHEHLEQA--------------------------------------------
+GAGHDAAQML------HVEQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAMGA
+GTEVEELAGSFNTMAAR-----LQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD----EPTGELMGEQLAR
+LTRLVEDINDVSRAEEGRIELDRSPQGV--SGLLHAATEA--HKEAYATKGVALTMDAD-PGLAVDVDRQRMGQVLGNLL
+TN---ALRHTPAGG-----------------RVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDHG-
+------GSGVGLAISRALIQTHGGTLSATSTT--AGATFTIDLPTKQPPTSPP----------TGAPVYPP--
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000034.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000034.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3dc2e1ca7f053f38fc4f6f7fa1854406a5f3f846
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000034.fa
@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_00412
+MPKEQTAGKPTTRRYSPEE-AAAVRMVRTMRAELGTEHGTVQRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEAQRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>KBS0714_MOLHKGIG_01397
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVNRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEAQRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>KD337_NAFOICDF_00325
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVQRVATQLGYGVESVRMWVK
+HADIDDGVTSGVSSAEAQRVRELEQEVRKLRRANEVLKRAASFFGAELDRHYRK
+>KD337_NAFOICDF_00648
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRVELGTEHGTVQRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEARRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>KD337_NAFOICDF_02216
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRVELGTEHGTVQRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEARRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>SA211_MHAAABBN_01130
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVNRVATQLGYGVESVRMWVK
+QADIDDGVTSDVSSAEAQRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+>TT9_LFPAFLNI_01347
+MPKEQTAGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVNRVATQLGYGVESVRMWVK
+QADIDDGVTSGVSSAEARRVRELEQEVRELRRANEVLKRAASFFGAELDRHYRK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000037.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000037.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8b230c51a74dfeffcf7352bee984e2a46ed58330
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000037.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00589
+MT--------TRVLLVDDQPLIRLGFAAILQSQ---DDIEVVGEAGDGAECLERAAALDP
+DVICMDVQMPRMDGIEATRALAEAG-TRAAVLILTTFDRDDFLFETLEAGASGFLLKSAE
+AEHLIDAVRVLGRGDALLDPQVTRRVLRRMASAAPEGVDGPAGVGQPRDDDGAAPGQAEA
+SDAVGKAGLTGREAEILTLMARGLSNGEIAGQLFVGESTVKTHVSNVLMKLGARDRVHAV
+IWAFEHGVAG------------
+>AS2_ACLBLIBL_00598
+MS-TDAENAPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRTLLQRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLMAHMA---------------PRLRSDHARTAECE
+HEQAAVESLTPREREVLVLMAQGSANLEIAGELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+>AS2_ACLBLIBL_02580
+M--------------VLPDAGVRGGVRVRTSRTGVVGDIRLVEGAVSG------------
+DLDSADLLLGGVNSLGETRQVARQGRDVPPFLLVAEATIVEELSGIDASGAAAVLAYPLD
+TVELAS----VAHGIAGSGPFLSPRL--------------------PQLSVEPLG-----
+------EGLSAREAEVVVALGEGLSDAEIAQALCVSVKTVHTHVLNLRRKLGARNRAHAV
+SLARSVGPLGDACSEPGLVAAL
+>KBS0714_MOLHKGIG_02160
+MS-SE-ETVPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLLTHMA---------------PRLRSDQVRSAECE
+EQQAAVASLTPREHEVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+>KD337_NAFOICDF_00520
+MSPDDAQPTPIRVALVDDQALIRSGLAMLIDSQ---PDLTVVAQASDGREAAASVAVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEHVMDAIEAGASGFLLKDAP
+PEELLAAIRTVHGGDAVIAPSTTRRLLAHMA---------------PRLRQDAARSAECA
+DEQAAVGSLTPREREVLVLMGQGAANPEIAAQLVLSEATVKTHVGRVLAKLSARDRVQAV
+LIAHRTGLVG-----------F
+>SA211_MHAAABBN_01873
+MS-SE-ETVPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLLTHMA---------------PRLRSDQVRSAECE
+EQQAAVASLTPREHEVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+>TT9_LFPAFLNI_02104
+MS-SE-ETAPVRVALVDDQALIRSGLAMLVDSQ---PDLTVVAEAGSGREAVASVSVAGA
+DVVLMDVRMPEMDGIEATRALLRRP-DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAP
+PEELLAAIRTVHRGDAVIAPSTTRRLLTHMA---------------PRLRSDQVRSAECE
+EQQAAVASLTPREREVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAV
+LIAHRAGLVQ-----------F
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000038.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000038.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7a2515908383b6ba9aa3e3d4d3f51aa27048646a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000038.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00620
+MKTRRLTLAAVGILASAGLITGCSTADDAGPSASPSSGQSAATSSSQPASESGSASESAS
+GG-GHMDHKMDGGPAPEGIAEAASPAHPVGSEITLTADHMPGMDGATARITGAFDTTAYS
+VDYTPTTGGEPVEDHKWVVHEELQDAGDAPLQVGDTAVMEAEHMAGMKGAEATVASVTDE
+TVYMVDYTADGMTMTNHKWVVESEIQPKG
+>KBS0714_MOLHKGIG_01288
+MRKHLKTTVAAGVLGGALVFTGCSTGGDQDQGT-------PSTTSQH----EGHGSSSDS
+GG---MEHPMDGGPAPEGIETAASPTYPVGTEVTLTADHMEGMDGANAMIAGAYDTYTYA
+VDFTPSAGGEPVKDHKWVVQQEIKDAGDERLADGTEVTLEAEHMEGMKGAKATIASSTEE
+TVYMVDYESDGMTMTNHKWVVESELKPAS
+>KBS0714_MOLHKGIG_01627
+MTMRFWTRTVAVTAASLLALTGCATGGEE-----------AATSSSH----GGHAG----
+-------HAMDGGPAPEGIEPAADPAHPVGTEVTLMADHMPGMEGAAATVVGAYETTAYS
+VDYRPTTGGPEVTDHKWVVQEELEDAGAERLPDGAAVTLAADHMPGMQGAEGTVHSSTDE
+TVYMVDYESDGMRMRNHKWVVESEIASAG
+>KD337_NAFOICDF_00712
+MQRRLRTGLAAGALGVALVLAGCASGADDNQQTD------PSATEEH----QGHGGNNAE
+SGDEEMEHPMDGGPAPEGIAEASEPTYPVGTEVQLTADHMEGMEGATATISGAFDTYTYS
+VNYTPAGGGDPVTDHKWVVQEEIEDAGDARLADGTEVTLLAEHMEGMEGVKAIIASSTDE
+TVYMVDYETDGMKMTNHKWVVESEIQPAS
+>SA211_MHAAABBN_01007
+MRKHLKTTVAAGVLGGALVFTGCSTGGDQDQGT-------PSTTSQH----EGHGSSSDS
+GG---MEHPMDGGPAPEGIETAASPTYPVGTEVTLTADHMEGMDGANAMIAGAYDTYTYA
+VDFTPSAGGEPVKDHKWVVQQEIKDAGDERLADGTEVTLEAEHMEGMKGAKATIASSTEE
+TVYMVDYESDGMTMTNHKWVVESELKPAS
+>TT9_LFPAFLNI_01246
+MRKHLMTTVAAGVLGGALVFTGCSTGGGQDQGT-------PSTTSQH----EGHGSSSDS
+GG---MEHPMDGGPAPEGIETAASPTYPVGTEVTLTADHMEGMDGANATIAGAYDTYTYA
+VDFTPSAGGEPVKDHKWVVQQEIKDAGDERLADGTEVTLEAEHMEGMKGAKATIASSTEE
+TVYMVDYESDGMTMTNHKWVVESELKPAS
+>TT9_LFPAFLNI_01556
+MTMRFWTRTVAVTAAGLLALTGCATGGEE-----------VATSSSH----GGHAG----
+-------HAMDGGPAPEGIEPAADPAHPVGTEVTLVADHMPGMEGAAATVVGAYETTAYS
+VDYRPTTGGPEVTDHKWVVQEELEDAGAERLPDGAAVTLAADHMPGMQGAEGTVHSSTDE
+TVYMVDYESDGMRMRNHKWVVESEIAPAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000041.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000041.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8bee4d51735c605eb93dec0d44219f2ea818d20f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000041.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00718
+MNLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLRAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEHILF
+PIVLIGLGIVILVSGGAFGL
+>KBS0714_MOLHKGIG_00617
+MSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPPAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWENILF
+PIVLIGLGIVILVSGGAFGL
+>KBS0714_MOLHKGIG_02075
+MSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPPAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWENILF
+PIVLIGLGIVILVSGGAFGL
+>KD337_NAFOICDF_02214
+MILTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVKPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEHVLF
+PIVLIGLGIVILVSGGAFGL
+>SA211_MHAAABBN_00340
+MILTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVKPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEHVLF
+PIVLIGLGIVILVSGGAFGL
+>SA211_MHAAABBN_01780
+MSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVT
+IGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLA
+NGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWENILF
+PIVLIGLGIVILVSGGAFGL
+>TT9_LFPAFLNI_02003
+MTLSSALQAIGLFLVTNIDDLIVLSLFFGRGAGQRGTTVRILVGQYLGFAGILGAAVLVS
+LGAGVFLPPEVIPYFGLIPLGLGLWAAWQTWRGDDDDDDDEAKIEGKNVAAWTVAGVTFA
+NGGDNIGVYVPVFLSVGPGAVVAYCVVFLVLVAGLVGLAKFVATRRPIAEVLERWEHILF
+PIVLIGLGVFILISGGAFGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000042.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000042.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5a4802d80110467d563ea40a1187353e68fea412
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000042.fa
@@ -0,0 +1,15 @@
+>AS2_ACLBLIBL_00724
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>KBS0714_MOLHKGIG_00161
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>KBS0714_MOLHKGIG_01073
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>SA211_MHAAABBN_00336
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>SA211_MHAAABBN_00347
+MTAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>SA211_MHAAABBN_00792
+MAAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+>TT9_LFPAFLNI_01022
+MAAKHGKGPGPDEGQRPARRGVVLTLLGIGLVAAAYVVTIVVMVVR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000045.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000045.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d1a00bc04bc8cb7e4931e957edd68832044e4a8e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000045.fa
@@ -0,0 +1,63 @@
+>AS2_ACLBLIBL_00822
+MSS------VLDAAGTPATPHPSPAAPSARV--PSSSGGGRLGAGRIGVPALVCMIVAASAPLTAVAGGITSNFAVTGLL
+GVPLSFLVLGVVLLLFSVGYAAMSRHVHNAGAFFAYVARGMGKPAG-------VGAALVALVSYACMQVG-----IAGMF
+GFATSSFLEGTFGIAVPWWASALAAWVLVGVLGLYRVDFSAKVLMGVVALEFLVVCVYTVLGLRAAPEGVSAAGLLPGQL
+-------FTSG----VGAALVFSVAAFMGFESGAIYNEEVKDPKRTAGRATLISVVLIAVFYAFSA-----WAMVMTEGP
+GGVVAAAQAVGPDVVFAFLGAHAPLWFTDLANILFIVSLLAALLAFHNIVARYAFALGREHVLPAFLAHTSTRTGAPVGG
+SLVQSGAALVVLVVFALAGSRSDDPLFPVVTLFTWLTNMGAFGLVLLM--ALTSVSVIGYLRRH--RDEFGVFTRVVAPA
+LAAVGLLTLFVLTMVNFPVLLGADGTTPLSWLLPALVVTPG--ALGTAWALWL----RARRPATYAG-------------
+IAR---GGEL----------S
+>AS2_ACLBLIBL_01873
+MSASTPRRRVVDSEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTLVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVLVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTALDSTDPDYGSGSSVFG-VGTVFVLGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGTAVVRDPNERTHS
+>KBS0714_MOLHKGIG_01015
+MSASTPRRRVVDNEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTLVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTAMDSTDPDYGSGSSVFG-VGTVFILGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGSAVVRDPNERTHS
+>KD337_NAFOICDF_02256
+MLSTHQ---------------------------------------------SVSVSTSSVAPVYSAVVTVPLVVGLVG-S
+GAPLAYLLALLPILGVWAGMSANDEREPDKGSVYSWAVTGH-PVLGWTAGWCLALTGIVATSGLAYVALD------AWLP
+GLGA--------GVKVLIGAGIIA---AATALASANVRITAAVQTAGVLVQVA-----ATAYLAWVLAR---VGLTPLPP
+---------AGTVQDWVHAVLLAVFAFWGFDAVYALSEESH--RGVPRRSAAVSLGLLAAIFLVFS------------AL
+G-------ASEDPAAVAALTHPVV-------MAGVVVSCVGAIGSTLIPTARGLSAMAERGHLSAVLA--------PLRA
+AEVVSALLAIAWLVVSLA---VPGVFEDSIE---------MLSVFVGGYFTISSATAAAH--ASGGARMLHAATAVVMGL
+ITAASLAWMF--------EPDYGA-TVVGG-VGGVGLLAVGFAVLGLILAVGAGHRGRAVHPT--SG-------------
+--------------------V
+>SA211_MHAAABBN_00729
+MSASTPRRRVVDSEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTVVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAIAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTAMDSTDPDYGSGSSVFG-VGTVFILGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGTAVVRDPNERTHS
+>TT9_LFPAFLNI_00958
+MSASTPRRRVVDNEGHEHVYPTTSAIEQVNLLNPGGVSNKGLQAGKVGLLGAVVIGVSVVAPAYTLTSGLGPTISTVG-T
+HVPAILLLGFIPMLLVALG-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------
+>TT9_LFPAFLNI_00959
+--------------------------------------------------------------------------------
+--------------------------MPDSGTSFTWATHAFGPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQIT
+GSQAIADLAGNLWVNIPLTLVYLA---LAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRG---AGFDPTPV
+QLDWFNPFTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSALAVISWAGIGSEGL
+G----AGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFA
+TWVCAGFAGLFYVVTRLL---SENALWDTIT---------ALGLMICFYYGITALACVWYFRREWFTSVGNALTTFLFPL
+IGGLVLLVMFCVTAMDSTDPDYGSGSSVFG-VGTVFILGMGVLAIGVVLMMWT----RLRHPAYFRGETLPQTDSTRPIP
+IIRPDDDGTAVVRDPNERTHS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000051.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000051.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6ca65ee9360a59ceb5bb75a8760c9dc7c6841b66
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000051.fa
@@ -0,0 +1,57 @@
+>AS2_ACLBLIBL_01707
+MT----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---DGTPEIGDAEGEAPSEMVVQPLIRGEGPEVGPDDSVTVNYVGETWSEGTRFDSSWER
+GAPISFSLNQVIPGWKEGLAGQPVGSRVLLSIPAEKAYGEQGSPP-DIGPNEP-----LL
+FVVDILDAQAPS--TP----------------PTN
+>AS2_ACLBLIBL_01708
+MSSFQTPETTTPRRRRRLLPLVSLGVAGLFLA---TACASGQ--DDTPEPQEDAASASQ-
+-SAAPERAAVGEGQGEPDALEGLSFSEGEDGAPSVEVDGELATDQPTTRVLTAGEGDQVK
+EGDVLKMSIAVVDPASGDVLAENFTGDP-ESVPVDQQLKSMNPEMHDLLVRNGVGSVVAA
+YSPEREVPAPPADGASPSASPPPRPSPPSSSCTRSSRSCPRRP-------RARRSPSAT-
+---SGCPR----------------------------------------------------
+------------------------------------------------------------
+--------------SP-------------------
+>KBS0714_MOLHKGIG_01181
+MSSFETPQPPTARRRRRLLPLLSLGAAGLMLA---TACATGD--DGADQPHSDTASAST-
+-SAAPERAAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQ
+EGDVLKMSIAVVDPASGEVVAENFSGEP-EAVPVDDQLKSMNPEIHEMLVGSGAGTIVAA
+YSPEYDVSVPQTESASPSASPSTQTQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTV
+DEQSGRPSIAKPDGEAPQELVVQPLIEGEGHEVGADDTVTVQYEGVTWSDGEVFDSSWET
+GQAITFSLNRVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPP-DIGENEP-----LL
+FVVDILDAQASA--TP----------------SAN
+>KD337_NAFOICDF_00314
+M-----------------RPLLPLALTVLMLSAGLTGCA---------------PSSPL-
+-DSVQVEEVTGQAQGR-----------------SVKFQTPVAVEEVSIRQLRAGTGAELD
+AGDAIVLKMDLFKGSDGTPIEAPFAGGPGQVIALDDQFKAQVPELHEALLQAQEGTMLAY
+SS-------PQTAGAAGDESTAVE-------IYEVAQKIPTTIEGKTSPVPDG-LPPITE
+DE-TGAPVVGPPQGQVPDELVAEYLIQGGGEPVQAGDTVIVHHLGMRWADAQVFDSSYQR
+GAPARFVLDNVIKGWQKGLIGKRTGSRVVLSVPVDQAYGTEA----ELGDNAPFPAGDLL
+FVIDILTTQP----TPPV--------------PTP
+>KD337_NAFOICDF_01606
+MN--RAPSSAAAPRRRRPRTALSLSLAGLLLA---TACGAGESSDGSSSPASASSSAAAQ
+GSEATSSSAAPVEYGDPAALDGLTFTVGADGTPSATVGKAIESDKAVVKTLTKGTGATPK
+AGDVLRLSTALLDPATGKVLNENFTTQP-EMVAVGSDPASMNPYVHKAVYGAPVGSDVAV
+Y-----LPAPSSSASAPSG---TEAAPAQLAVFRV------QGVAEQLPQADERLPKVSV
+DPATGRPSIEKPTGSAPEELVVEPLIQGEGPEVEDTDTVAVQYQGVTWSDGSTFDSSYER
+GTPATFSLDQVIAGWKEGLAGQKVGSRVLISVPSEKAYGAEGTPDGSIGKDED-----LL
+FVVDILAAQPAAASSPAAPSGSTAPSGSSSASPSN
+>SA211_MHAAABBN_00900
+MSSFETPQPPTARRRRRLLPLLSLGAAGLMLA---TACATGD--DGADQPHSDTASAST-
+-SAAPERAAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQ
+EGDVLKMSIAVVDPASGEVVAENFSGEP-EAVPVDDQLKSMNPEIHEMLVGSGAGTIVAA
+YSPEYDVPVPQTESASPSASPSTQTQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTV
+DEQSGRPSIAKPDGEAPQELVVQSLIEGEGREVGADDTVTVQYEGVTWSDGEVFDSSWET
+GQAITFSLNQVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPP-AIGENEP-----LL
+FVVDILDAQAPA--TE----------------SAN
+>TT9_LFPAFLNI_01131
+MSSFETPQPPTARRRRRLLPLLSLGAAGLMLA---TACATGD--DGADQPHSDTASAST-
+-SAAPERAAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQ
+EGDVLKMSIAVVDPASGEVVAENFSGEP-EAVPVDDQLKSMNPEIHEMLVGNGAGTIVAA
+YSPEYDVSVPQTESASPSASPSTQTQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTV
+DEESGRPSIAKPDGEAPQELVVQPLIEGEGREVGADDTVTVQYEGVTWSDGEVFDSSWET
+GQAITFSLNQVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPP-DIGENEP-----LL
+FVVDILDAQASA--TP----------------SAN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000054.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000054.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bdfbdd1aea0f95f23246836d96ef2c8ab482673a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000054.fa
@@ -0,0 +1,56 @@
+>KBS0714_MOLHKGIG_01590
+MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQWAISGYTLVFGMVLVPAGRA
+GDLFGRRRLFMVGLGVFALGALLSGLAPTGVLLVLARLVMGVGAGLLNPQVTGFIQSEFSGTSRARAFGALGAVVGVSVA
+VGPLLSGGLIAWLGGDLGWRATFLVNVPIALGALVVARHWLPRTAPERARRPDLDPVGVVLLAGALVAVMLPFL---DRE
+LGPWRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMFVVIAMFMQNGLG-----
+---YPALHAALIGLPSAVMSSVMSTVAGRVVLRTGRK-IVVLGIALALLAVVGSIGVAWANR-----EFGLSP--WWLLL
+TLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTGQRVGTAVGTAVIVGVFLGVASGADW----------------
+--DGAFMAAFT-----LVAGCMALALLVALADLRGPRTAAPRG------------------------
+>KD337_NAFOICDF_00643
+M--------------------------LFASFMDLLDVTIVTVAAPHIAADLNASPAQLQWMLAAYTLALGSGLITGGRI
+GDDYGRRRVFLAALAAFAIASAACALAPTAGALIAVRAVQGLAGGFMVPQVFGIIRSSFEPAAMAKAFGAYGAVQGLASV
+AGPLIGGALADADLWGLGWRTIFWINIPIALVALVLGWRVLPDS--RAAARSRLDGVGALLAAVGVLLVLLPLVQGRDWG
+WPTWGWALLAAGVLVLAGFLRYENALARRGGEPVLDPDLLRVRPFVAGLAASVLFFGGLASFFLVVSIYLQAGTG-----
+---RSAWDTGLVILPYAIGSMLTSGAGVALAARAGRA-LLLTG-SLTLAA--SQALLWWLVR-----DGSTTPDYWPLAG
+AMFLGGLGLGLGAPILVNVVLAGVPGRRAGAAGGVLSTVNQIGGAVGVAVLGTVFFNAASSAGP----------------
+--ATAPAELFGDALAQVMPWQVATYLLAAVAMLALPKTAAPHQD-----------------------
+>KD337_NAFOICDF_00714
+M----------AGDCIRQIPRWGFVLSLAATILMMAAASAPSLFYPQIAERLGLIPVATTLVFAVYTFTLLAALLYLGPL
+SDHVGRRPVVAAGSLALALSVAMFWFAGSLAALLVARALQGLAAGLLIPALSAMM-IDFESPSH-RNIAALWNTIGPMIG
+LG---AGALGAALLLDLTSEPTTAVFGSLVLAFLIVA----------------------------TVVWSTPEL------
+---------------------VPKTQIRRGD---LRPRFTVPPHL---RRMFTVGVPVIIAGWATNGLFLALGADLVGSE
+LGGSTHTQAGIVLFALAISGVTASS---VLQRRSART-ISLYA-TSALAF--GTAVSIGAL------ALGSYP---AYVA
+SVAIVGSGFGTAFLGVLRTLMPHTASSERAAVMAVIYTVAYLAFGVPTIVAGLLV-----------------------PV
+LTLSGTMTILG-------AIIIALSLVATVLRLRIPHPAAGPAEADDFPEPPTGSHRRSAPDREEQP
+>KD337_NAFOICDF_01240
+M----NPSAGTSGGVFTARQRRVLAVLLVPVFMSLLAVSSINVALPSLQRGLGASDAELQWSISGYTLAFGMVLVPAGRA
+GDLLGRARLFRIGVLGFGLGALLSGLAPSGLLLVLARVLMGVGAGLLNPQVSGFIQAEFEGQARARAFGALGSTVGVSVA
+AGPLLAGGLIAVLGGDLGWRATFLVNVPIALAAVLIARGWLPEESPAPAGRRDFDPVGVALLASALVAVMLPFL---DRG
+LGPWRFALLPLGAALAAGWAVWERGYRARGRAPMVDLSLFGLPGFRNGALMIGVYFTGSTSLFIVVAMFMQNGLG-----
+---YGALQAALVGLPSAVCSSVMATVAGRLVLRAGRR-LVVVGVSLVLAAVVGSIGVVAAHQ-----AFGLSP--WWLLA
+TLGLFGMGQGLTVSPNQTLSLAEVPRPQSGTAGGILQTGQRVGTSVGSAVIVGVYLGVAGTGGP----------------
+--DRGFMAALG-----LIAVSIAAALAVAVADQR--RRARQGGR-----------------------
+>KD337_NAFOICDF_01828
+M----------------PRPRLLLAVILLAQFVIPLSISGTAVALPAIASDLGSDPTPLQWVVNGFNVAFAVCTIVWGAC
+SDRIGYTRSFRIGIAIAIAGGIVSMFAPNIAVLDAGRIIAGIGSAAVLTSAAPILSHLFEGKARAQAFALFGTINGLGLA
+AGPALSGLLLSA----WGWQGIFAAHT-------------------------------IVLIVAFIGAARLPQL---GRG
+GTSLR---------------------------EILDFSALKAPKF---LAMTLVPIAGAI-GFVTFLTYLPSALGAIHGL
+TAGVTGALMLVMTIPVLIAPVAVH----RLMERSHLTPTAIVAVSFACLI-VGGIGVLLLLRPDLPVALGVTP-------
+-MILLGLGFGLPLGFVDAEALAAVPAERAGAASGVINLFRIGSEAVFVAAYGALLAAVITTTLPGTTGELIASGSPGEPW
+IYHSGLMAAAG-----TMIGLVAIAGVTFLALTRAANRSAVTARQ-----------------VEVAR
+>SA211_MHAAABBN_01302
+MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQWAISGYTLVFGMVLVPAGRA
+GDLFGRRRLFMVGLGVFALGALLSGLAPTGVLLVLARLVMGVGAGLLNPQVTGFIQGEFSGASRARAFGALGAVVGVSVA
+VGPLLSGGLIAWLGGDLGWRATFLVNVPIALGALIVARQWLPRTAPERARRPDLDPVGVVLLAGALVAVMLPFL---DRG
+LGPWRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMFVVIAMFMQNGLG-----
+---YPALHAALIGLPSAVMSSVMSTVAGRVVLRTGRK-IVVLGIALALLAVVGSIGVAWANR-----EFGLSP--WWLLL
+TLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTGQRVGTAVGTAVIVGVFLGVASGADW----------------
+--DGAFMAAFT-----LVAGCMALALLVALADLRGPRTAAPRG------------------------
+>TT9_LFPAFLNI_01517
+MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQWAISGYTLVFGMVLVPAGRA
+GDLFGRRRLFLVGLGVFALGALLSGLAPTGVLLVLARLVMGVGAGLLNPQVTGFIQGEFSGASRARAFGALGAVVGVSVA
+VGPLLSGGLIAWLGGDLGWRATFLVNVPIALGALIVARQWLPRTVPERARRPDLDPVGVVLLAGALVAVMLPFL---DRG
+LGPWRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMFVVIAMFMQNGLG-----
+---YPALHAALIGLPSAVMSSVMSTVAGRVVLRTGRK-IVVLGIALALLAVVGSIGVAWANR-----EFGLSP--WWLLL
+TLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTGQRVGTAVGTAVIVGVFLGVASSADW----------------
+--DGAFMAAFA-----LVAGCMALALLVALADLRGPRTAAPRG------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000057.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000057.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e0b649c8c7a9a04f783f60b9113a74f2f5ee1ae1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000057.fa
@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00027
+MSETTRTPGTGRGTMRAVRFTGEGGAGSLAVGQEPIPTPGPGEVLVKVAAAGLNRADVMQ
+-REGKYPPPPGASDVPGLEVSGVVVALGEEAGLPGEGRFAPGDEVCAL----LAGGGYAE
+HVVVPAGQLMAVPPGVDLVTA------AALPEVACTVWSTMSERGGVRAGDVVLVHGGSG
+GIGTFAVQYLAAIGARVLATAGGPAKCERVRGLGAEDVFDHRSGEPGAFADWVLERTGGR
+GADVVLDVVGGPYLDANVRCLAEEGRIVVIA--VQGGPKADGFNLMRLVSKRGWLTGATL
+RARSVVDKARIVAGTERAVAPLVAAGRIDLAVGARFPLDDAAAAHRRFEAEDRVGRVLLV
+TDPADALWPQEDRT
+>KBS0714_MOLHKGIG_00310
+MD----VP----AQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQ
+-REGRYPPPRGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCAL----LAGGGFAE
+YVAVPAGQLMAVPDGVGLVEA------AALPEVACTVHSTLVGRAGVQAGDRVLVHGATG
+GIGSFAVQFLTAVGARVLGTAGGPEKVALGRGLGAEHMFDHRAAESGAFAPWVKEVTDGH
+GADVILDVVGAPYLAPNVSALAPEGRIVTLA--VQGGAVPEDFNIMKLVVKRGWLTGATL
+RSRSVTDKAGIVAAAERAVWPLVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLV
+TDPADARRPSGDRA
+>KD337_NAFOICDF_00023
+MD----TA----PDMLAVRFAGAGGTDVIRVGREPVPEPGPGEVLVRVAAAGLNRADVVQ
+-REGHYPVPPGASEVPGLEVSGTVVALGPQAGVAGEGRFAVGDRVCAL----LAGGGYAE
+HVAVPAGQLMSVPDGLDLVSA------AGLPEVACTVHSNLEGRAGVRPGEWALVHGATG
+GIGAFAVQYLSAVGVRVLATAGGPAKVARALELGADAAFDHRAAAPGAFADWVREITGGH
+GADVVLDVVGGPYLAPNVKALAMDGRIVVIA--AQDGPVPEDFHLMRLAARRGWVTGSLL
+RPRPPDEKAGIVAAAERAVWPLVAAGRIDPGVTARFPLREAAAAHAHFEGAARMGKVLLV
+TDDADALLPGG-AA
+>KD337_NAFOICDF_00654
+MHPS--LP----RTMLAAIIPAPGGRPELR--QCPVPEPGPGEVLVRVMASSVNPTDVMT
+WRRGMFVTGQTVPFVGGYDMSGIVVKLG-----RGVTALDVGDAVTGMPRFPAPAAAFAQ
+YSAVPARHLARIPTGTEDLSAGAWGRWAGLPLAGLTAYQALVDTAHLQSGQTVLVHAASG
+GVGSLACQLAVNLGAQVTAVTSDRGR-TLVEVLGTRHVVDR------ATVDW--QRFAG-
+CFDVVLDTVGGDTTPRSLAMASPDGVVVALHPYAHDDLAQRDPRLRRMLVE---------
+-----PDHHALELLIEQA-----ARGRLTVQVGAGYPLSDLGDALLHVETNKTPGKTIIH
+I--------QGDNA
+>SA211_MHAAABBN_00025
+MD----VP----AQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQ
+-REGRYPPPRGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCAL----LAGGGFAE
+YVAVPTGQLMAVPDGVGLVEA------AALPEVACTVHSALVGRAGVQAGDRVLVHGATG
+GIGSFAVQFLAALGARVLGTAGGPEKVALGRRLGTEHMFDHRAAESGAFAPWVKEVTDGH
+GADVILDVVGAPYLAPNVSALAPEGRIVTLA--VQGGAVPEDFNIMKLVVKRGWLTGATL
+RSRSVVDKAGIVAAAERAVWPLVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLV
+TDPADARRPSGDRA
+>TT9_LFPAFLNI_00317
+MD----VP----AQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQ
+-REGRYPPPRGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCAL----LAGGGFAE
+YVAVPAGQLMAVPDGVGLVEA------AALPEVACTVHSALVGRAGVQAGDRVLVHGATG
+GIGSFAVQFLAALGARVLGTAGGPEKVALGRRLGAEHMFDHRAAESGAFAPWVKEVTDGH
+GADVILDVVGAPYLAPNVSALAPEGRIVTLA--VQGGAVPEDFNIMKLVVKRGWLTGATL
+RSRSVVDKAGIVAAAERAVWPLVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLV
+TDPADARRPSGDRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000059.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000059.fa
new file mode 100644
index 0000000000000000000000000000000000000000..598504c862a5bd558fe0cc7323ff1ce1ec6b6d0f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000059.fa
@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00057
+MLSE------------------------------------KSRPVIEATA--AVVAEHMPEITPK---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGVFSRANQRSGEQAQALAGSIVTFAVH----LLEHPDTLPEAVLARIAHKHTALGIVPEQY
+QIVYENLFWAIADVL-------GEAVTPEVAEAWTEVYWLMADALIKIEEGLYAQQANTKMWTDWKVVAKEPTGNAAVTF
+RFAPADETPQTPGRPGGYLSVRLKVEDGLRQCRQYSLSDHAESTDERVITVKLDEGGEVSPVLIQNVEVGDVIELSNPYG
+DITLRD--DAETPLVLATAGIGITPAAAILDTLASRGSQREVHFFHGDASWDSVALREQVAESLQALENGTGRLWLGVPP
+QEA---PAAFTTTEGLMEFDDVELP--ADASYLLCGPLAFMQATRSKLIDAGVPATSIRYEIFGPDLWLAA-
+>KBS0714_MOLHKGIG_00297
+MLSE------------------------------------KSRPVIEATA--AAVAEHMPEITPL---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGVFSRANQRNGEQAQALAGSIVKFAVH----LLENPGTLPEAVLSRIAHKHTALGIVEEQY
+PIVYENLFWAIGEVL-------GDAVTPEVADAWTEVYWLMADALIKIEKGLYAQQANDRMWTDWKVVAKEPTGNAAVTF
+RFEPADDTPQSRGKAGGYVSVRLKVEDGLRQCRQYSLSEKAESATERVITVKLDEGGEVSPMLIQNVEVGDVIELSNPYG
+DITLED-EDSTAPLVLATAGIGITPAAAILDALAQQGSDRQVLLLHGDASWEAVALREQVTESLAALAHGDARLFLGVRP
+EQD---PEGVTTVEGVMHFDDVELP--RDGHYILCGPLAFMQSTRSKLIDAGVPATSIRYEIFGPDLWLAA-
+>KD337_NAFOICDF_00035
+MLSE------------------------------------KSRPVIEATA--AVVSANMPQITPA---------------
+--------------------------------------------------------------------------------
+-----FYGHMFEAHPELLDGTFSRANQLNGEQAQALAGSIVHFAAH----LLEHPDSLPEAVLARIAHKHTALGITEDQY
+QVVYENLFWAIAQVL-------GDAVTPEVAEAWTEVYWLMADALITLEKDLYAVQANDRMWTDWKVVAKEPTGNAAVTF
+RLEPADDTPQTPGRPGGYVSVRVTVADGLRQARQYSLSESASSTGQRVITVKLDEAGEVSPVLIQEVEVGDVVELSNPYG
+DITLQD---SDAPLVLMTAGIGITPAAAILDSLAASGSQREVRVLHGDASWDSVALRDQVLEDVASLPHAQADLWFGVAP
+ETA---PEGVSVHEGKVDTAAAALP--EGADYILCGPLAFMKSERSALIEAGVPAPRIRYEIFGPDLWIAAT
+>KD337_NAFOICDF_01222
+MPAHGWGARAGRTSFREHPVDVQECLWRGAHASSHDRSALHSRPSRGGSADPAPADRPPPPLTPAPGPAGIRDRPAGRIP
+AWWRDASGSLLWLVLLAVTALWVHGGGVQDLAAVGSGLTSLGRLTGLIASALLLAQVFLMARVPLVEQAWGQDRLTRVHR
+RVGFTSFTLMF-AHLALITAGYA------WDTPAGLWGTLVDFAVDYPGMLLAIAGTAALVMVVVTSFKAARARLRYESW
+HLIHLYGYLGAGLALPHQLWTGQEFLASPVATAFWWTLWAVTAGAVVVFRALLPLWCSAR--AGLRVQSVTAAGPHAVTV
+TVA-GRGAHRLHARGGQFFQWRFLDGPGWTRAHPYSLSAAPDGRTLQFTAAVVGDGTG----RLWDMRPGTRVLVEGPYG
+R--MHDGVRTGRKALLMGAGIGITPMKALLESLPADAG--EITVVHRVSDPDDPTLHADLLAAARTRGARYIRLEGRRRP
+GADSWLPASAGDVDDVTALRRI-CPDLAEHDVFVCGAPAWTDLVRQAARRGGVPAERIHDERFSF-------
+>SA211_MHAAABBN_00005
+MLSE------------------------------------KSRPVIEATA--AAVAEHMPEITPK---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGLFSRANQRNGEQAQALAGSIVRFAVH----LLENPGTLPEAVLARIAHKHTALGITEDQY
+QIVYENLFWAIADVL-------GDAVTPEVAEAWTEVYWLMADALIKLEKGLYAKQANDKMWLDWKVVSKEPTGNAAVTF
+RFEPADDTPQTPGEAGGFVSVRVKVADGLRQARQYSLSDHAASTTERVITVKLDEGGEVSPMLIQNVEVGDVIELSNPYG
+DITLED-EDSTAPLVLATAGIGITPAAAILDALAQQGSDRQVLFFHGDASWEAVALREQVTESLAALPHGDARLFLGVRP
+EQD---PEGVTTVEGVMHFDDVELP--RDGHYILCGPLAFMQSTRSKLIDAGVPATSIRYEIFGPDLWLAA-
+>TT9_LFPAFLNI_00304
+MLSE------------------------------------KSRPVIEATA--AVVAEHMPEITPL---------------
+--------------------------------------------------------------------------------
+-----FYAHMFEAHPELLDGVFSRANQRNGEQAQALAGSIVKFAVH----LLENPGTLPEAVLSRIAHKHTALGIVEEQY
+PIVYENLFWAIGEVL-------GDAVTPAVADAWTEVYWLMADALIKIEKGLYSQQANDRMWTDWRVVAKEPTGNAAVTF
+RFEPADDTPQSRGRAGGYVSVRLKVEDGLRQCRQYSLSEKAESTTERVITVKLDEGGEVSPMLIQNVEVGDVIELSNPYG
+DITLED-EDSTAPLVLATAGIGITPAAAILDALAQQGSDRQVLFFHGDASWEAVALREQVTESLAALPHGDARLFLGVRP
+EQD---PEGVTTVEGVMHFDDVELP--RDGHYILCGPLAFMQSTRSKLIDAGVPATSIRYEIFGPDLWLAA-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000063.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000063.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d52c310cab17ae0a6439bd2b217fa6d7f24e8c4c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000063.fa
@@ -0,0 +1,90 @@
+>AS2_ACLBLIBL_00086
+M--------TPPLSRRHRALGMTSALALVLTGASAAGATSGTGAP-AAAEADAVTAVTGAAGTADQGP----RTAPEVFE
+DGGYIVLMAEAP--VASYDGG-TPGYAPTKPGKGLGRDKGFNPKSANAKKYAAHLERGQDRALERAGAEAAPHTRYTTSL
+NGFAGELTAQEAAALASDPAVLAVVPDEIRQPDTVSSPDFLGLTGKKGLWAQVVGKKAPATDAGRGVVVGVVDSGIRPE-
+-------AASF--QDRGHPAAPADWAGG---------------CETGDEEAFPADSCNDKLIGAKYFVQGF----GAGRL
+APVETLSPLDAGGHGTHTASTAAGNAGVPAVVDGTPRGEISGMAPGAHVAAYKACWEGV--PSGGCATSDTVAAINAAVE
+DGVDVLNYSISGTTSNVVDPVEVAFMHAAAAGVFVAASSGNSGPTVSTTAHPSPWITTVAAST-QAVYEQTLVTGDGQRF
+IGSSITAPLEAETPMVHAADLAADGVDAARAALCLPGTLDATAAADMLVVCDRGENARAEKSQVVADAGGAGMVLVNVAD
+SGLNADLHALPAVHLPHTERDRLLAYVDTEEPTGRILP--TTEGTTTRVPEVAGFSSRGPSLAAASDLLKPDVSAPGVDV
+LAAYS---PDEAGEDFAYASGTSMSSPHVAGLAALVKQGRPDLGPMEIKSSLMTTAGDHASATSP-----FAEGAGFVDP
+MKILDPGLVFDTDQGDWYDYLAGQGIVFSGSGEPVSETPIDASDLNVPSIAVGELYGSQTVTRTLKNVGGNNGVWTARVE
+GMEGMDVSVSPQVIKPRRGQEQDVEITLTAAGAPAGQWATGHVVWSGPAGK---EVRIPVVARPGVADAPASVTVDRDAD
+GLELPVLSGVDGTFTTRVNGLTAGTEHIGTTVRRMFFDSTDPALTGHDFAYPRGYPTVRIEAETSAEDVDLDVYVTGSWT
+SYPVARSVTRGTGMEVFQGPIYSSAPQHRIFVVAKTGAD---GVEHDEPIDYT-LRVFFPQAGGG------------DNG
+VLSFDPASAAVKPGQTHVFHGTLNTDGTSVYTGTVDILHEGKVV----DTTQIRVQ--
+>AS2_ACLBLIBL_00159
+MRKAEAMPHIPTPARRRRAL------------AAAVVGASLVAAPALAASAIAVELPDGSVVTSPQGE----AKVEQQFE
+DGRYFVVLKDAPSVTAQEAGAPAPGAAPKAK---------FDPDHPRVKNYEAKLQRQQEKVARDNGVE--PKTTFQRAV
+NAFVAELTAEEAMRLSKDSAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWNTTYGK---PENAGKGVVVGVIDTGIHPDN
+PFIDAEPVKPL--KGKAKVGEPYRTADGDIAVLKADGTTATAECETG--PGFPADSCDTKLIGAYAFSDDFERFVPVENR
+HPAEQLSPLGVFSHGTHVATTILGNTGVEQTIDGTSFGEGAGVAPAASLISYKICWEDNDPNTGGCYTSASVAAIEQAIE
+NNVDVLNYSISGSNTTIVDPVAMAFKSAAEAGIFVAASGGNSGPTPNTVNHSSPWLTTVAAETFSNELTGTVEFSDGTKY
+RGASSAGSDAGPAEVIHASEVAAG--DAEAARLCLPGSLT-AEAADKIVLCERGQNARVEKSAVVAEAGGVGMILANTPT
+GSLDADIHSVPTVHINDT--DGVIEKVKSSDLTATIVRGDTTGLPQDPLPQIAGFSSRGPSNAVNQEFLKPDVAAPGVNV
+IAGVSPLDPDYNGNEFGLMSGTSMASPNLAGMAALLIGKEAAWSPMAVKSALMTTAGDVFNADGSVNEDNFATGAGSADP
+KAAARPGLVYEADSTQWDALLLGE---------------IAGREVNVPSVAIPDVVGSASVTRTLTAT--ENGRWQFS-G
+SVPGFEVTASPSMLDLKKGQSAEVELTFTRTDAEVNTWAHGSMSWSTAKGKAVPTVTSPVTLKALSATATSAVEGSGAEG
+SATVEIEPGMTGELTPQILGLGKVEAAEVSAVANTSASGA--ALAGRVVNVEEGTKALVASINAGAEGVDWDLYVI----
+------------------------TPQGRQLNMATAAGDETLTIQNPVPGEYTVIGHLYSAPAGTDTASLETLKLREDVG
+NLTVDPNPVPVTTGEA--------TTAELAWSGLTEGTWKGLVTWDAGVTTDVTVTVP
+>KBS0714_MOLHKGIG_00221
+MRKAEAMPQNPTPARRRRAL------------AAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGE----VQVQQQFE
+DGRYFVVLKDQPSVTAPEAGA-VPGAAPKAK---------FDPSHPRVKNYEAKLQRQQAKVAKAHGAK--AEISFQRAV
+NAFVAELTAEEAQSIAKDPAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWKSVYGK---AENAGKGVVVGVIDSGIHPDN
+PFIDGQPVQPL--KGKAKVGVPYRTADGQIAVLKADGTTATAECETG--PDFPASSCDSKLIGAYAFSDDFERFVPVDER
+APEERISPLGVFSHGTHVATTILGNTGVEQTIDDDSFGEGAGVAPAAHLISYKICWEDTDPDTGGCYTSASVAAIEQAIE
+NNVDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAETFSNELTATVQFSDGTQL
+RGASSARTGVGPAEVIHASEVAAG--DAEAARLCLPGGLT-EEAADKIVLCERGGNARTEKSQVVEEAGGVGMILVNTPS
+GSLDADIHAVPTVHMND---NGVIEKVKSSDLTATVVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNV
+IAGVSPLDPDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNTDNFATGAGSADP
+AAAARPGLVYDSGKEQWDALLRGD---------------IAGREVNVPSLAIPDVVGSATVTRTVTAL--ENGRWQFS-A
+SVPGFEVTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWTTAKGKAVPEVTSPVTVKAKSAAVTSAVEGSGATG
+SADVEITPGVTGELTPQVLGLGKVDSTVAAATASNSLVSS--ALAVSTVTVEEGTKSLVASINAGAAGADWDLYVI----
+------------------------TPEGKQLSRATADESETLTIANPTPGAYTVVGHLYAANGGKDTGTLETLKLREDAG
+NLTVSPNPVPVTSGKA--------TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP
+>KD337_NAFOICDF_00117
+------MNRHP---QRLRLL------------GAAVTAVGLMAAP-LAAPAFA----------APQAEHAVGVQAATPLK
+AGRYFVILKDAPSAVAESQAT-APGAAPSAK---------FDANHPRVKNYEAKLKRQQEKVAAQQGVT--PKVTFQRAL
+NGFVAELSAEQAQAYAEDPAVLAVTADEQVAPD-YTSTDFLGLNGKKGAWNTTFGK---AENAGRGVVVGVIDSGIYPDS
+PFLDGTPVGPRTNNGKLKAGDTFRTADGRIAVQKADGTLATAECQSG--PDFPASTCDSKLIGAYAFSDDFVRGTPVEKR
+DPAERISPLGVKSHGTHVATTIVGAKDVEQTIDGASFGLGSGVAPAAKLISYKVCWEDTDPDTGGCYSSASVAAVEKAIE
+NNVDVLNYSISGNNTSVVDPVALAFRSAAEAGIFVAASGGNSGPTPSTVNHSSPWVTTVAAETFSNELTGTLELSDGTKV
+RGASSARTGVGPAPVIHAADAAAAGVSADDARLCKPGALDPAKAAGKIVLCERGVNARVEKSAVVKDAGGVGMILVNVTP
+GSLDADIHAVPTVHTND---ASLIAKAKAGGLQATIVPGDTTGQAPDPLPQIAGFSSRGPSNAVNQEFLKPDVAAPGVNV
+IAGVSEYDSDYHGNVFGLMSGTSMASPNLAGMATLLIGKHPEWSPMAVKSALMTTAGDVYNADGTVNQDNFATGAGSADV
+AAANRPGLVYESDATQWNALILGD---------------LAGREVNVPSVALPDVLGTASVKRTVTAL--ENGRWTFS-G
+SVPGYTVTASPSVLDLKAGQKAEVTLTFTRTDAALSQWTHGSFSWTTAKGKAVPSVTSPVTLKSVPATADASVTGTGASG
+SAAVAVQPGFTGQLTPSVLGLNKVESQAVTLQPGGS--------KVTPVTVAPGTKSVTFAVDSGVDTADWDMLVQ----
+------------------------TPSKKQFTSATESSDESVTIQDPEPGTYLVLTQLYANPAGADTAALETVQLRSDAG
+NMTVTPNPIPVTTGQE--------TSATVNWTGLTSGTWRGQVTWAEGTATQVEVTVP
+>SA211_MHAAABBN_02234
+MRKAEAMPQNPTPARRRRAL------------AAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGE----VQVQQQFE
+DGRYFVVLKDQPSVTAPEAGA-VPGAAPKAK---------FDPSHPRVKNYEAKLQRQQAKVAKTHGAK--AEISFQRAV
+NAFVAELTAEEAQAIAKDPAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWKSVYGK---AENAGKGVVVGVIDSGIHPDN
+PFIDGQPVQPL--KGKAKVGVPYRTADGQIAVLKADGTTATAECETG--PDFPASSCDSKLIGAYAFSDDFERFVPVDER
+APEERISPLGVFSHGTHVATTILGNTGVEQTIDDDSFGEGAGVAPAAHLISYKICWEDTDPNTGGCYTSASVAAIEQAIE
+NNVDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAETFSNELTATVQFSDGTQL
+RGASSARTGVGPAEVIHASEVAAG--DAEAARLCLPGGLT-EEAAGKIVLCERGGNARTEKSQVVEEAGGVGMILVNTPS
+GSLDADIHAVPTVHMND---NGVIEKVKSSDLTATIVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNV
+IAGVSPLDPDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNTDNFATGAGSADP
+AAAARPGLVYDSGKEQWDALLRGD---------------IAGRDVNVPSLAIPDVVGSATVTRTVTAL--ENGRWRFS-A
+NVPGFEVTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWTTAKGKAVPEVTSPVTVKAKSATVTSAVEGSGATG
+SADVEITPGVTGELTPQVLGLGKVDSTVAAATASNSLESS--ALAVSTVTVEEGTQSLVASINAGAAGADWDLYVI----
+------------------------TPEGKQLSRATADESETLTIADPAPGAYTVVGHLYAANGGKDTGTLETLKLREDAG
+NLTVSPNPVPVTSGKA--------TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP
+>TT9_LFPAFLNI_00222
+MRKAEAMPQNPTPARRRRAL------------AAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGE----VQVQQQFE
+DGRYFVVLKDQPSVTAPEAGA-VPGAAPKAK---------FDPSHPRVKNYEAKLQRQQAKVAKAHGAK--AEISFQRAV
+NAFVAELTAEEAQAIAKDPAVLGVAPDEQVAPD-YSSTEFLGLPGKKGTWKSVYGK---AENAGKGVVVGVIDSGIHPDN
+PFIDGQPVQPL--KGKAKVGVPYRTADGQIAVLKADGTTATAECETG--PDFPASSCDSKLIGAYAFSDDFERFVPVDER
+APEERISPLGVFSHGTHVATTILGNTGVEQTIDGDSFGEGAGVAPAANLISYKICWEDTDPDTGGCYTSASVAAVEQAIE
+NNVDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAETFSNELTATVQFSDGTQL
+RGASSARTGVGPAEVIHASEAAAG--DAEAARLCLPGGLT-EEAADKIVLCERGVNARTEKSQVVEEAGGVGMILVNTPS
+GSLDADIHAVPTVHMND---NGVIEKVKSSDLTATIVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNV
+IAGVSPLDPDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNTDNFATGAGSADP
+AAAARPGLVYDSGKEQWDALLRGD---------------IAGRDVNVPSLAIPDVVGSATVTRTVTAL--ENGRWRFS-A
+NVPGFEVTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWTTAKGKAVPEVTSPVTVKAKSATVTSAVEGSGATG
+SADVEITPGVTGELTPQVLGLGKVDSTVAAATASNSLESS--ALAVSTVTVEEGTKSLVASINAGAAGADWDLYVI----
+------------------------TPEGKQLSRATAAESETLTIANPTPGAYTVVGHLYAANGGKDTGTLETLKLREDAG
+NLTVSPNPVPVTSGEA--------TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000064.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000064.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1887866a01f0210ada3030771a4ec3e16ae5d0a2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000064.fa
@@ -0,0 +1,54 @@
+>AS2_ACLBLIBL_00088
+M-----------------------TA-ALTTRENTAPAAEPAGARIPVAELRNLRVGFDDGAGGTRAVVHGVDLRIEPGQ
+CVAIVGESGSGKSVTARTLVGLTGAGSRVSADLARLGEDDVLALDERAWRRRRGVRVGYILQDALVSLDPLRTVGAEIGD
+VLRLHGVSDRGERRRRAADLLAEVGVPEPQVRLDQRPGELSGGLRQRALIASAVALQPELVIADEPTTALDVSVQVQVLE
+LLSRL-KSSGTAVLLISHDFAVVSRLADHVLVMEGGRIVESGPVRRILDAPEHPYTRRLLAAIPSGDTRGQRLSPE----
+-PRAVV---THAPLV-AAPTAQGGPTLAARGLTKRYRGPDGR-DRTVVDDVSFDVFAGQTLGIVGESGSGKSTTAAMALG
+LVQPDAGTVELDGRPWSGVSARARRARRRQVAVVYQDPLSSFDPRWNGERILADAAGAGVPPWASPARRRAARDDARARA
+VDLARLVGLDPRHLTRSPARLSGGQRQRLAITRALAVQPRVLVLDEAVSALDVSVQAQVLDLLGDLKEGLGL-TSLFISH
+DLGVIHHVSDRILVMKDGRAVEQGDADQVFHAPRHEYTRGLLASL--EQLSIR-------------------------
+>AS2_ACLBLIBL_00265
+MD-PKHDDGALGAGSHAAAPEAAPTAGTDPAGVGSAE-MPAPGA--PLLEIRDLDVEFR-TQQGTVKAVEGASLTLPAGG
+TLAIVGESGSGKSTTAMAAIGLLPGNGRVTGGSVKFAGEELVGLSDAKMRRIRGRRIGLVPQDPMSNLNPVTRVGQQIGE
+TLLTHGLATKKDVGAKVVEVMERAGIPEPARRAKQYPHELSGGLRQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILD
+QIDEMTRELGSSVLLITHDLGLAADRAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPS--VAAARLLPEAFDP
+APSALKEDDTAALSTVALAKKDLTPLVEIRDLTKVYP-VRGHDDFTAAKDVSLKIPRGKTVSIVGESGSGKTTTARMLLK
+LIEPTSGEITFEGKDVLGMKGEDLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYKRGNAKERRARV
+LELMEQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGL-SYLFISH
+DLAVVRLISDYVCVMKDGEVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGEHV-----------------
+>KBS0714_MOLHKGIG_00119
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------------------------------------------------------------------------MLLK
+LIEPTSGEISFEGRDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYRRGNATQRRARV
+LELMDQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGLRSYLFISH
+DLAVVRLISDYVCVMKDGRVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV-----------------
+>KD337_NAFOICDF_00137
+MSIPK-----------------SPTS-TLPSAVAPA----------PALSVHGLDVDYA-GRHGQAPALRDVRLEVPAGG
+TLAVVGESGSGKSTLARVLLGLSAANARIRSGRIHVAGQTVDAADTDALARLRGRCIGFVPQDPVTGLNPVRTIGEQVVA
+AVRTHTRLRVDDAYGRAEALLAEAGVDRPGHRLGQFPHELSGGLRQRVLIALALAGDPEVIVADEPTSALDATVQQQVLD
+RLGLLQERTGAALVLITHDLAVAAGRAERIVVMRQGRIVEAGPAEQIAQSPQDSFTRRLVAASPG-----RR--------
+-PTARV---LAAPDVEAGPGADPAPVVRVRGLRHEYPGVHGSAPHVAVDGVDLDIRAGETLALIGESGSGKTTTGRLVLG
+LETVREGSVQIRGVETAGVGGRAWRRARRHLQTVHQNPFASLDPRQTVERIVAEPL---------RAFSVGSRTERRDRV
+TELLERVSLPAATASRRPGELSGGQRQRVAIARALALDPDVLVCDEPTSALDVSVQAQVLELLARLQDEQGL-ACLFITH
+DLRVVWDIAHRVAVMRDGRILETAATERLFRAPEHPYTAELLAAA-----GVTAPLTGTQTSAGTMTPAGARALVGRP
+>SA211_MHAAABBN_02135
+MD-PKHDDGAPG-------PGAAPA-------------VPAAGA--PLLEIRDLDVEFT-TQQGTVQAVEGASLTLPAGG
+TLAIVGESGSGKSTTAMAAIGLLPGNGRVTAGSVRFAGEELVGLPESRMRRIRGRRIGLVPQDPMSNLNPVTRVGQQIGE
+TLLTHGMATKKDVGAAVVEVMERAGIPEPARRAKQYPHELSGGLRQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILD
+QIGEMTRELGSSVLLITHDLGLAAERAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPS--VAAARLLPEAFDP
+APVALAEDDTAALTTVALAKQDLTPLVEIRDLTKVYP-VRGHEDFIAVKDVSLKIPRGKTVSIVGESGSGKTTTARMLLK
+LIEPTSGEITFEGRDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYRRGNATQRRARV
+LELMDQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGL-SYLFISH
+DLAVVRLISDYVCVMKDGEVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV-----------------
+>TT9_LFPAFLNI_00127
+MD-PKHDDGAPG-------PGAAPA-------------VPAAGA--PLLEIRDLDVEFT-TQQGTVQAVEGASLTLPAGG
+TLAIVGESGSGKSTTAMAAIGLLPGNGRVTAGSVRFAGEELVGLPESRMRRIRGRRIGLVPQDPMSNLNPVTRVGQQIGE
+TLLTHGMATKKDVGAAVVEVMERAGIPEPARRAKQYPHELSGGLRQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILD
+QIGEMTRELGSSVLLITHDLGLAAERAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPS--VAAARLLPEAFDP
+APVALAEDDTAALTTVALAKQDLTPLVEIRDLTKVYP-VRGHEDFIAVKDVSLKIPRGKTVSIVGESGSGKTTTARMLLK
+LIEPTSGEITFEGRDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFTVGRIIEEPL---------QTYRRGNATQRRARV
+LELMDQVALPSHFHRRYPAELSGGQRQRVAIARALALNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGL-SYLFISH
+DLAVVRLISDYVCVMKDGEVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV-----------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000065.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000065.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bac52f14b0b5b7ab495669fc2516608bccd1bd26
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000065.fa
@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00092
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------MDLTYKLWEGSWDEGAVLQDKGGSRHADPEKVHKIHHVSERYRVEGPHLPAPSP-QRTPVLF
+QAGSSGPGRAFAARNAEAVFLIAPSVEAARQQIEDPRRQAVEFGRRPEDIKFFQGLSFVIGDTEEEAQAKLEEYERYVSV
+DGYLA-HAALV---DPDGRVYPPDTPLRELETNTQ-KGFAESLQKAITDREPVVADVA--------------WRSHRDSR
+VVGTPEQIADELQRWQ-DAGVDGVNVINWVIPGSFEEFIEKVLPVLRERSLAQSDYG--EGTLRHRLFGEGDRLPDRHPA
+AKYRGAFTGTPRSQRAPRTEPQGADPAPAA
+>AS2_ACLBLIBL_00093
+MT---------KTARRRPLHLNAFAMNTTSHIHHGQWRRPDARQHEFADLRTWTELARTLEDAAFDAMFFADVVGHYGDA
+DADYAVYVEEGLQIPSNDPTVLLGALAAVTERIGLATTSNVFQAHPFQFARQLSTLDHLSRGRIAWNIVTGT--------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>AS2_ACLBLIBL_00195
+-------------------------MMTPVHQSPGLWRHPESRIAEFDRLAYWTGLARTVEDGGFSALFLADVLGLYDVY
+GGGIEATVRGGVQWPVLDPAVAVPAMAAATERIGFGVTASVTYERPYLLARTLATLDHFTGGRVAWNIVTSYQDSAARNL
+GLDRQIPHDARYDLADEALDALYRLWEGSVEPGAVAFDRAAGVVADPDRVHPAAVAGAHVRVPDAALTHPGP-QGTPYLF
+QAGASARGRRFALDHAEAVFAIGPTPAHVRRFVDQTRAGLTEAGRSADAIRVLAMVTVVVAETDEAAAQRLAGYAEHVDV
+AGALALWGGWT---GVDVAGLDPDAPLEHVVTDAN-RSALAAFTEDPSGRTWTLRDVAEF-----------VAIGGRGPV
+IVGSPETVADELQRWQAETGVDGFNVSAAVRPADLERFAALVSPELRRRGVLREPEP--GRTLRENLSGAGPALPADHRG
+HAFRTA-----------------------G
+>KD337_NAFOICDF_00133
+MTGTHPSTPRPRTADRQLILGAHF----PGVNNTTVWSDPESGSQIAPE--SFIRFAEIAERGRLDFIFLAEGLRLREQR
+GLLHDLDVVGR---PATLP--ILAALAAATEHIGLIGTLSTTYNEPYELARQLAGLDALSGGRAGWNVVTSPDAFTGENF
+RRGGYLPRERRYQHAGEFLATAQQIWDAA---------SGRPPHVDVD--------VEDFSVHGT-VDAPAPVHGRPVIL
+QAGDSDEGRDLAAREADAVFTRHGDWEAGQEFTADMRRRAAAAGRPDGAVRVLPGVTVVVGDTDEEAAAEAEQIRR-AQV
+SGATA-VLTLERIWNRDLSGWDPDGPLPDVEPVLEDTGLSQGRVRHVADPHAEVARLREISQRQGLTLRETVIATGQRQD
+FVGSPETVAQELIRHVEHDVCDGFILIPHLTPGGLEPFVDRVVPLLQERGALRTDYPEDGGGLRGLLGAA--VHPTAGRA
+S-----------------------------
+>KD337_NAFOICDF_00146
+MT---------ATPAPAPFILSAFDMVTPVHQSPGLWRHPESRAHEFDRLSFWTDLARTVEEGGFTAVFLADILGLYDVH
+GGGVDATVRGGVQWPLLDPFTVVSAMAAVTERVGFGVTASVTYEQPYLLARTLTSLDHFTGGRIAWNVVTGYQDSAARNL
+GLDRQPGHDERYDRADAYLDAMYRQFEGSVERDAVVADRESGVFADPAKVHPIDVEGPHVRLPGVALAHPGP-QGTPFLF
+QAGASSRGRRFALEHAEAVFYIGPTTAHVRRFVEQTREGLREAGRPEDAIRVLAMVTVVVADTDEEAQARLASYHEHVDV
+ESALALFGGWT---GVDLSGLDPDAELEHVESEAS-RTALAAFTTQSPDRRWTVREVAEF-----------VSVGGRGPV
+IVGSPATVADELERWHRETGVDGFNISAAVRPTDLERFARLVSPELRRRGVLREPEA--GRTLRENVAGAGPLLPEDHRG
+AGFRR-------------------------
+>TT9_LFPAFLNI_00201
+MT---------AT--PAPFILSAFDMVTPVHQSPGLWRHPESRAHEFDRLSFWTDLARTVEEGGFTAVFLADILGLYDVH
+GSGVDATVRGGVQWPLLDPFTVVSAMAAVTERVGFGVTASVTYEQPYLLARTLTSLDHFTEGRIAWNVVTGYQDSAARNL
+GLDRQPGHDERYDRADAYLDAMYRQFEGSVERDAVVADRESGVFADPAKVHPIGVEGPHVRLPGVALAHPGP-QGTPFLF
+QAGASSRGRRFALEHAEAVFYIGPTTAHVRRFVEQTREGLREAGRPEDAIRVLAMVTVVVADTDEEAQARLAEYHEHVDV
+ESALALFGGWT---GVDLSGLDPDAELEHVESEAS-RTALAAFTTQSPDRRWTVREVAEF-----------VSVGGRGPV
+IVGSPATVADELERWHRETGVDGFNISAAVRPTDLERFARLVSPELRRRGLLREPEA--GRTLRENVAGGGPLLPEDHRG
+ARFR--------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000069.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000069.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cba095b5c55edd4d5abfbaa0038458927532af8a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000069.fa
@@ -0,0 +1,61 @@
+>AS2_ACLBLIBL_00135
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTQSMDQHGVLERTARVEAELFGSLAATGIG
+HGSDTAVLLGLAGQDPETIDPDACVGLVDEILQGGRMPL-----DGRHEIAFDRQKDMTL
+HMRRTLPGHPNGMRLTAFDADGEQLHTRDYYSVGGGFVVTSDELEAELDESRDVSRHDDG
+EGGEPYPFATGAELAGRCRTNGLSIAELMLANEATRHDLGELRTQLLAIWDVMQECVHNG
+VTRTEPILPGGLKVRRRAPALRAHLLET-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVLHYYMRFVLPQDATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+>KBS0714_MOLHKGIG_00236
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVAEIVTGGRLPL-----DGRHEIAFDRQADLTL
+HMRESLPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDG
+DTGEPYPFSTGAELAARCREAGLSIAELMLANEATRHDLDELRTQLLAIWAVMEECVHNG
+VTRTEPILPGGLQVRRRAPALREHLLQT-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAITTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+>KD337_NAFOICDF_00100
+MALSILDLFSIGIGPSSSHTVGPMRAARRFTYALERDGLVERTARVKGELFGSLSATGVG
+HGSDMAVILGLCGNDPETIDPEAAAPQVQACVEGGTLPL-----DGTHEIPFDRPKDLVL
+HMRRSLPGHPNGMRLTAFDADGAELLTRDYYSVGGGFVVTGEELEAELDETRDVSRH--G
+EEPEPHPFSTGADLIAQCEIHGLSIADVVRANEAARGDLADVEAKVLEIWDVMQECVAHG
+IHRTEPILPGGLKVKRRAPGLHAQLLEKGT--------DGAEKDPMWAMEWVNLFALAVN
+EENASFGRIVTAPTNGAAGIIPAVLHYYDRFVLPPGTPAEERRAKILDFLFTAAAIGILF
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTPLQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALVGDGDHRVTLDQAIQTMRETGADMKSKYKETSRGG
+LAVNVIEC
+>SA211_MHAAABBN_00102
+MALSVVDLFSVGIGPSSSHTVGPMRAGRRFALGLVERGLVDATERIHVQLFGSLSATGHG
+HGSDRAVLLGLEGEDPETVDTDRANARVESMKAERRLALAAGAEQGGKDLDFDPDADLVM
+HRRRSLPYHPNGMSFTAYDGSGEVVVERVYYSVGGGFVVD--------DEAAGADRVVED
+ATEPPLPFSSGRELLNHCDREGISIPELMRRNEEAFRPWEAARAALLNTWRVMQECVEAG
+CEATG-TLPGGLKVPRRAALLKEQLEVSAPRDGSAPPRDGGAPDALGAMEWVNLYALAVN
+EQNASGGRIVTAPTNGAAGIIPAVLHYWRDFLARE-MTAEHIEDGVVDFLLTAAAIGILI
+KENASISGAEMGCQGEVGSACSMAAAGLCQLLGGTPQQVENAAEVGIEHNLGLTCDPVGG
+LVQIPCIERNAIASVKAINAARLCRRGDGRHTVSLDQAIKTMRETGQDMKVKYKETSRGG
+LAVNVIEC
+>SA211_MHAAABBN_02249
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPL-----DGRHEIAFDRQGDLTL
+HMRESLPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDG
+DTGEPYPFSTGAELAARCHEAGLSIAELMLANEATRHDLDELRTRLLAIWAVMEECVHNG
+VSRTEPILPGGLQVRRRAPALREHLLQT-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+>TT9_LFPAFLNI_00237
+MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG
+HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPL-----DGRHEIAFDRQGDLTL
+HMRESLPGHPNGMRLTAYDDAGEQLHTRDYYSVGGGFVVTSDELEAELDATKDVNRTDDG
+DTGEPYPFSTGAELAARCHEAGLSIAELMLANEATRHDLDELRTRLLAIWAVMEECVHNG
+VTRTEPILPGGLQVRRRAPALREHLLQT-T--------D--RTDPMWAMEWVNLFALAVN
+EENASGGRIVTAPTNGAAGIIPAVMLYYMRFVLPKGATQQERDDKVVEFLLTAAAIGILY
+KRNASISGAEVGCQGEVGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGG
+LVQVPCIERNAIASVKAINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGG
+LAVNVIEC
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000070.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000070.fa
new file mode 100644
index 0000000000000000000000000000000000000000..94a247ad134b87f67f92e8223694c9d3a0022df7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000070.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00157
+------------------------MAHGLARSFGDVHAVRDVSLTVPSGSVTALVGPNGS
+GKTTLMLLLATLLRPDAGAVTIGGVDAVREPQEARRRLGWMPDTLGVWESLTCRDILTSL
+GRLYGMGAAEAAARAGEQLERVALTEFADRPARVLSRGQQQRLSLARATVHRPGVLLLDE
+PANGLDPAARIRLRDDVRAMAAEGTAILVSSHVLAELEEMSDRAVFVREGATLSTQEFRE
+DA--AQTRPYRIAGPASA-RPDVLVRALEARGLAVEPA--AAHGQPRAGVVVGLRGET--
+AAAELLADLVREGVPVSHFAPEGSRLENAYLGLHLDRDTAEGDRP---------------
+>AS2_ACLBLIBL_00588
+M----------------------ITVNEVSKSFGSTPVLQDLTFSIRPGLMTGFVGGNGA
+GKTTTMRILLGVLDADSGRIEVDGAPITRD---YRAGIGYMPEERGLYPKMSVLDQLVYL
+GRLHHMRGADAKARALELLERLNLGDRAGSRLEELSLGNQQRAQIAAALVHDPVALVLDE
+PFSGLDPNAVETTLQVLRETADTGVPVLFSSHQLDLVERLCDELVILAGGRVRAS-----
+----GTRDELLAAHADPEWELHADADTGWVRGLPGIEVL------HFDGGRARFRADTPQ
+AAQRVLADAAARG-PVHRFGPVTRSLHEIFTEVT------------------------R-
+>KBS0714_MOLHKGIG_00223
+MTA---PAPPPASPVLGVAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGS
+GKTTLLLILATLLRPDAGAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASL
+GRLYGMGKAEASARADEQLAWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDE
+PANGLDPAARIRLRDDLRAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRA
+AD--DLARPYRIAGPDPT-ARDTLIRALETRGLTVTAATGAGAGQRRDGVVVQLRGEA--
+AAAALLADLVREGVLVSHFAPEGSRLENAYLGLHLEGPRTEGDRP---------------
+>KD337_NAFOICDF_00115
+MTSSVLPQPP-----------SGIVAHGLARSFGSVHAVRDVSLTAPAGSVTALVGPNGS
+GKTTLMLLLATLLRPDRGSVSVAGVDAMADPGQARRLLGWMPDTLGVWDSLTCADILTSL
+GRLYGMGQAEAATRAREQLAWVQLEPFADRPARVLSRGQQQRLSLARATVHRPAVLMLDE
+PANGLDPTSRIRLRDDVRAMAAAGVAVLVSSHVLAELEEMADRAVFVSEGATVAVRDLSG
+ADDAGRERPYRIAGPDPS-RRDELVRALQARGVPLAAPLEG----HRPGVVVRLRGED--
+AAAALLADLVAAGVPVSRLAPEGSRLENAYLDLALGGPAPHAAGPVTAAGPAPTVEGGRA
+>SA211_MHAAABBN_02236
+MTA---PAPPPASPVLGVAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGS
+GKTTLLLILATLLRPDAGAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASL
+GRLYGMGKAEASARADEQLAWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDE
+PANGLDPAARIRLRDDLRAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRA
+AD--DLARPYRIAGPDPT-ARDTLIRALETRGLTVTAATGAGAGQRRDGVVVQLRGEA--
+AAAALLADLVREGVLVSHFAPEGSRLENAYLGLHLEGPRTEGDRP---------------
+>TT9_LFPAFLNI_00224
+MTA---PAPPPASPVLGAAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGS
+GKTTLLLILATLLRPDAGAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASL
+GRLYGMGKAEASARADEQLAWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDE
+PANGLDPAARIRLRDDLRAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRA
+AD--GLARPYRIAGPDPT-ARDTLVRALETRGLTVTAATGAGAGQRRDGVVVQLRGEA--
+AAAALLADLVREGVLVSHFAPEGSRLENAYLGLHLEGPRTEGDRP---------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000071.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000071.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bf7e560484a71d83aca39cf099c1c460f2fc0034
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000071.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00162
+MVGLLGPTAGGLLLGVVGVLAAASVIAAVLRARMGARNPELIG------NLVQRIGAWWA
+MVAVLAAVL--ALGETATLLLFLVLTWLSLREFLTISPTGRADHRTLVWLFFVVTPLHYW
+FVWEHWYGMFSVFIPVYAFLFLPVRAALAGRTEGFLRRAAAVQWAAMVCVYAVSHIPAVL
+QLPVAMEHGRHMAEGSAPGSGDEAGALLLLFLLLVVQGSDVFQYVWGKTLGRRPIAPSVS
+PNKTWEGFVGGVLTATALG-AALSFLTPFPWWVAALFAFVSCLLGFGGGLVMSAIKRDRG
+IKDFGSLIPGHGGIMDRIDSLVFAAPVFFHLVRFFYA
+>AS2_ACLBLIBL_02307
+MT------------------TAVST-PAPPRGGRDLKSAVLVGVGLLVLALVGLVWLDWL
+LVLLVVALLVGAVTEVAT----------------AVRGIGLQVPRPPLWAAAVALPVSAW
+L-----WGVPALFVALAACL------ALLAVWTALTRHRPTGQF-MLAGVFIVLWAPFLL
+SFAVAM-------------LDQPRGNLLVAITLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSALVGVVTVPLFVGQPWWVGAILAVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+>KBS0714_MOLHKGIG_00656
+MT------------------SAVSTSPAPPRGGRDLKSAVLVGVGLLATALVGLFWLDWL
+LVLLVVALLVGAVSEIAT----------------AVRGIGLDVPRPPLWVAAAVLPLTAW
+R-----WGVPALFIALVACL------ALVAVWTALTRRRPAGQF-MLAGVFIVLWAPFLL
+SFAAAL-------------LDEPLGHRMVAVLLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWVGAVLGVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+>KD337_NAFOICDF_02164
+MT------------------PDATA-PSPPRGGRDLRSAVLVGVGLLGTALVGLVWLPWL
+LVLLVVSLLVGAVNEVAV----------------AIRQIGLDVPRPPLWVGATVMPLAAW
+T-----GGIPALFLALMASL------VLMFAWTAVTRRRPTGQF-MLAGTFVLLWAPFLL
+SFAAAL-------------LDQPAGHMMVVCLVLMVVSNDTFGYMVGYRWGRTPIAPRIS
+PKKSWEGALGSLAGSVAVGSVLVPVLVGHPWWAGALLGALTVGAATAGDFSESMVKRELG
+IKDMSSALPGHGGIMDRLDSLVFAAPVAYAVLALPLS
+>SA211_MHAAABBN_00393
+MT------------------SAVSTSPAPPRGGRDLKSAVLVGVGLLATALVGLFWLDWL
+LVLLVVALLVGAVSEIAT----------------AVRGIGLDVPRPPLWVAAAVLPLTAW
+R-----WGVPALFIALVACL------ALVAVWTALTRRRPAGQF-MLAGVFIVLWAPFLL
+SFAAAL-------------LDEPLGHRMVAILLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWVGAVLGVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+>TT9_LFPAFLNI_00626
+MT------------------SAVSTSPAPPRGGRDLKSAVLVGVGLLATALVGLFWLDWL
+LVLLVVALLVGAVSEIAT----------------VVRGIGLDVPRPPLWVAAAVLPLTAW
+R-----WGVPALFIALVACL------ALVAVWTALTRRRPAGQF-MLAGVFIVLWAPFLL
+SFAAAL-------------LDEPLGHRMVAVLLLMVVSNDTFGYIVGYRFGRTPIAPRIS
+PKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWVGAVLGVTTVAAATSGDFSESMVKRELG
+IKDMSSALPGHGGVMDRLDSLVFAAPVAYTVLALPLT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000074.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000074.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5f4a3361e08e80d9587b55313530d949bb7d8783
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000074.fa
@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_00184
+MAEHPAARPEQDATTSTSAATSTSPASRAGRELLFNAFDMNCVAHQSPGLWRHPEDRARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTAEAAIRSGAQTPVNDPFLLVSAMAAVTGHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVRYDKETGVFADPAKVHDIGH
+EGRYFKVPGAAVT-EPSPQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELT
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVEAFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGYNLAYHITPGTFEDV
+VEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPEGHHGASFALRRR-G
+>KBS0714_MOLHKGIG_00207
+M------------STAENAGAGAPTRPDEHRAILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGRYFTVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVETFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGAFEDV
+VEFVVPALQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR--
+>KD337_NAFOICDF_00130
+M------------STAENAGAGAPTRPDEHREILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTRLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGTWFKVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVETFQKASGTDEGWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGTFEDI
+VEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFAFRNRRG
+>KD337_NAFOICDF_00132
+M------------STPTPTLGIA-------------------LTTQTPA------------DARGHWTRLSQALEETSLD
+WAVLTDPLGTAPQAG------------THRIDAVLAACWTATRTHRIGLVPEVTTTHTEPFHVSIGLATLDHVSHGRAGW
+LATVSAAPEVSALFGRRRHPAERTPGLQASRVDLELWEELQDAVAAVRDLWE-SWEPDAEIRDIATGRFIDRERVHHVDV
+EAERFSVRGPSITPRPPQGRLPVLVEA-AGPAGLEAARRTADVVLLPAAEVGRTDAARLPDRRRRGATPAVPVEPTRIVA
+DVTLEGDGARVADAVRHALQAGADGARLVPNPTADPFDALALAADVHDRLDDIRPPDTGTVPLRECLGLAPALSPWRHPE
+DPT--------------ARPTDEEATA-----------------------------------------------------
+--------------------------------------------------
+>SA211_MHAAABBN_02200
+M------------STAENAGAGAPTRPDEHRAILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGRYFTVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSTVETFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGTFEDI
+VEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR--
+>TT9_LFPAFLNI_00207
+M------------STAENAGAGAPTRPDEHRAILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQTLEKGLFD
+GLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVTAGTAYEHPYPFARRLATLDHLTGGRVGW
+NVVTGYLPSAAQNMGQDDQMEHD-----------ERYEHADEYLDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAH
+EGRYFTVPGHAVT-EPSVQRTPVIYQAGASTRGRAFAGKHAEAVFINS--------------------------PTKELA
+AATVKKIRQALVDAGRDPYDVKIFAMQTIVTGATDE-DARAKYDDLAQYVD----PLGGLVLMSGWMGIDLSQYDLDEPI
+GDVKSNAIQSAVETFQKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPGAFEDV
+VEFVVPALQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR--
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000076.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000076.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6287cd60a103d09664bcc8cdc46196c1a715d1fe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000076.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00186
+MS--EALSRIL--QVWPEIVVALGQTLTMLAVTIPLAVLLGTPLGIWLFTHAPGGLSPSP
+RLHRVVD-AAVSMLRSFPFLILLIAIIPVTRLIVGTTIGTAAVIVPLTVNAIPYFARFVE
+QNLAQLGPGPVEAARAMGATRGQIVRDVLLVDARPALVGSLTIMSVSFISYSAMAGLVGG
+GGIGDFAIRYGYYRYETPLMVVAILLMIGLVALLQFAGTRLSQRLDHRRPRTARRPRRRA
+LAPAG
+>AS2_ACLBLIBL_01853
+MTWLETLTTNP--AITDALPEALVETLLMVAISGVATVLIGGLLGIVLHVTRPGGLNPMP
+ALYTVLSTVIVNITRSVPYAILMVALIPLTKWLVGTAIGPIAATVSLTIGTAPFFARLVE
+SALREIPSGTVDAAQVMGSTRGQVIRKVLLPEAMPGLIAATTTTLVTLVGYSAMAGLIGG
+GGLGRLAYNYGYQRFQTEVMVVTIVVIVILVQLIQWIGDLLIRRVDHR------------
+-----
+>KBS0714_MOLHKGIG_01030
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWSFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FIVNLIRPIPFVILIAALQPLTIAVLGTGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRAVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+>KD337_NAFOICDF_01742
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWAFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FVVNLIRPIPFVILIAALQPLTIAVLGSGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRTVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+>SA211_MHAAABBN_00745
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWSFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FIVNLIRPIPFVILIAALQPLTIAVLGTGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRAVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+>TT9_LFPAFLNI_00974
+MI--DRFQNLDWGYYGPELMTAVGDTLYMVGWSFILGGILGLLVGLVLYTTRPGGIFANR
+AVYLVTN-FIVNLIRPIPFVILIAALQPLTIAVLGTGIGNTAVVFCMIWASTFGIARIVE
+QNLVSLDPGVIEAARAMGASRMRIVRAVVLPEALGPLILGFTFVIISLVDMSAMAGIIGG
+GGVGNFAIVEGYNRFRPEVTWLAVIVVIVFVQALQLIGNGIARKVMRR------------
+-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000077.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000077.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d546430b3ee97620a67054aa8ca0755dd5ab7bb6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000077.fa
@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00187
+-------------------------MISIQNVSTAF--GE-----HRAVDDVSLEIPTGS
+IQGIIGFSGAGKSTLLRNVNLLLRPSAGRVVVDGTDLTALSPSGLREARRGIGMVFQHFN
+LVHNLTAAQNVALALKFAG-VDRRARQARAHEALEIVGLADHAGRYPAELSGGQAQRVAI
+ARALSTRPSVLLCDEPTSAVDPRTTATVLQHLVDINRDLGITTVIVTHEMNVIRAVADDV
+AVMEDGRAVERFALADL-----ERADFAPRTGIGRYLLEDEIALERPPLRGAA------G
+APDG------DRAGSGTTPGTSPGTTSIPGDVREAVVAGV--------------------
+---------------------------------------
+>AS2_ACLBLIBL_01854
+M-----SSSPTVST---SAHPVGTPMIEVRGLEKTFRQGAKE---IRALRGVDLAVAPGR
+IHGIIGQSGAGKSTLVRCLTLLEPPTSGTVSVAGKDLTRESRSGLLDSRRRIGMVFQHAN
+LFSSRTARDNVAYPLEVAGGSDAAARRARADELLALVGLKGFEGSYPAQLSGGQKQRVGI
+ARALASDPDVLLCDEPTSALDPASTEGVLTLIQDLSQRLGLTVLVITHEMHVVKRLCHEV
+SLLQDGRIVQSGDLGDV------AAD-----------LDSPLSSALLPLPAPH------A
+APDQRLIEVLGRGAAASLPITQLVRDAGAGEVE--VLAGTVEDLAGERFSHQLLGLAGTW
+AAGDAAVARLQEAGLTARTLSARQASQDQHTADEIGGAR
+>KBS0714_MOLHKGIG_01029
+MAGSHTSDRDAVTPGRPSAGAPGEPVIVFDHVSRVY--AAKKGAGVKAVDDVSLAVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSKRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDSGRVVESGKVYDLFSRPAHSAD-----------AASFVATALKDRPNAEEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+>KD337_NAFOICDF_01743
+MAGSHSSDRDAVTPGRHSEGAPGEPVIVFDHVSRVY--AAKKGRGVTAVDDVSLSVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSTRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDTGRVVETGKVYDLFSRPAHSAD-----------AASFVATALKDRPNADEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+>SA211_MHAAABBN_00744
+MAGSHTSDRDAVTPGRPSAGAPGEPVIVFDHVSRVY--AAKKGAGVKAVDDVSLAVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSKRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDSGRVVESGKVYDLFSRPAHSAD-----------AASFVATALKDRPNAEEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+>TT9_LFPAFLNI_00973
+MAGSHTSDRDAVTPGRPSAGAPGEPVIVFDHVSRVY--AAKKGAGVKAVDDVSLAVNRGE
+VFGVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFN
+LLTSRTVAGNIEFALDTAG-WPRSKRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGI
+ARALAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRV
+AVMDSGRVVESGKVYDLFSRPAHSAD-----------AASFVATALKDRPNAEEVARIRA
+RTEGRLIMVSLKDSAAVSAVLGTASTRGVG-FE--IVHGGMSATKDSAYGLLTVALTGEA
+AAVDAFVADLAGAG----------DVQEVHQ--------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000080.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000080.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6f1cbc9c0d8c44900133481bb7c87a6af60201c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000080.fa
@@ -0,0 +1,49 @@
+>AS2_ACLBLIBL_00201
+------M-------------------------------TPGSPDD---------------
+DGAPAVRRRVLVLLNPHAGRRRSLARAQARLRTHPGLALDLVVPDPADHAAQLAAGRTAL
+ADGVDAVVVRGGDGMVAAGVGLVGDHAEATGRRVPLGIVPAGTGNDLARAAGLHRRDPGA
+ALEAVLRALEDPAAPVRRIDALRLTVTRAGAVVERRWAANSVNIGFDARVNARA-NALGA
+VPGPLRYLAALGLEARAFAAVEMGLGLDDGPVRRERVALVSVQNGPTIGGGIPLAPGARL
+DDGRAEATVVGPLPTAGLALLFPLVYVRAHRLLRPLCTERARRVRVAVPDGVPVYADGDE
+VLPASHGGAAVEVEAVPGAVALLG--------------------------
+>AS2_ACLBLIBL_00332
+------MALVALVLGAVLAVAVIVLAVRHRGLAERHERTRGQLDAVEHRLDAAQRRLGEL
+PGVDRPRQEIALVLNPVKARADEVRRTLEAMADREGLGSVLVLETEEDDPGT-QMAKDAL
+EAGVRLVIAAGGDGTVRTVA------EQLTGTDVALGVVPLGTGNLLARNLDLPINDIEE
+CLRIALTGRQ------RRIDTVDVRFTHEEGEVTRQTFTVIGGAGYDADIMADTKDELKD
+VAGWLAYSEA-GMRHLRGKRHDVSISLDGGASRRFKVRTVMVANCGMLTGGVELLPEAKL
+DDGLLDVLVLSPRHALDWARIAAKTVTRHGANIPVMHTEQAQRVKVEFADPMPSQLDGD-
+---ATGHIVALDARVQPDSLVVMLLDEKEASVHDDGRSEAAPVPEPAPHI
+>KBS0714_MOLHKGIG_00063
+MTPEWWMALAALVLLALLVVVVVVLAVRQVRLGVQHERTRLLVDALDARVGGVQRRLEEV
+PGIGTGRHEVALVLNPIKTHADRVRRELERLAEAEGLGEVLVLETQEDDPGT-AMARQAL
+DAGARLVIAAGGDGTVRTVA------EQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQ
+CLRIAVGGRQ------RRIDTVDVRFTHEDGRVTRQTFTVIGGAGYDADIMGDTKDELKS
+LAGWLAYSEA-GMRHLRGKRHEVTVALDGGQPRRFKVRTVMVANCGMLTGGVELLPQAKL
+DDGLLDVMVLSPRHALDWARIAVKTVTRHRSSVPAMHTEQAQRVKVEFAEPMPSQLDGD-
+---ATGVITALDARVQPDSLVVMLVAEDDASVRDDGVSAAAPVPEPAPHI
+>KD337_NAFOICDF_00273
+------MALAALVLAALFAVAVVVLGLRLRRLDGAHERTRGQLDAVEARLGDLRRRAGRA
+PGVDLPGPQVALVLNPVKARADEVRRAMEALAEKEGLGEVLVLETTEEDPGT-AMTREAL
+TAGVRLVVAAGGDGTVRTVA------EQLAGTDVALGVMPLGTGNLLARNLDLPINDIEE
+CLRIALTGRQ------RRIDTVDVRLTHEDGARTRQTFTVIGGAGYDADIMGDTKDELKD
+MAGWLAYSEA-GMRHLRGRRHEVSITLDGGAVQRFKVRSVMVANCGMLTGGMELLPEAKL
+DDGLLDVLVLSPRHALDWVRIAAKTLTRHRASIPVMHTEQAQRVQVRFAEPMSSQLDGD-
+---ATGDITALDARIQPDSLVVMLGDEDDASVEDGGRSAEAPVPEPAPHI
+>SA211_MHAAABBN_02076
+MTPEWWMALAALVLLALLVVVVVVLAARQVRLGVQHKRMRLRVDALDARVGGVQRRLEKV
+PGIGTGRHEVALVLNPIKTNAGQVRRELERLAEAEGLGEVLVLETQEDDPGT-AMARQAL
+GAGARLVIAAGGDGTVRTVA------EQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQ
+CLRIAVGGRQ------RRIDTVDVRFTHEDGRVTRQTFTVIGGAGYDADIMGDTKDELKD
+LAGWLAYSEA-GIRHLRGKRHEVTVALDGGQPRRFKVRTVMVANCGMLTGGVELLPQAKL
+DDGLLDVMVLSPRHALDWARIAVKTVTRHRSSVPAMHTEQAQRVKVEFAEPMPSQLDGD-
+---ATGVITALDARVRPDSLVVMLVAEDDASVRDDGVSAAAPVPEPAPHI
+>TT9_LFPAFLNI_00058
+------MALAALVLLAVLAVVVVVLAVRQVRLGVQHQRTRLLVDALDARVGGVQRRLEEV
+PGIGTGRHEVALVLNPIKTHADRVRRELERLAAAEGLGEVLVLETQEDDPGT-AMARQAL
+DAGARLVIAAGGDGTVRTVA------EQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQ
+CLRIAVGGRQ------RRIDTVDVRFTHEDGRVTRQTFTVIGGAGYDADIMGDTKDELKD
+LAGWLAYSEA-GIRHLRGKRHEVTVALDGGQPRRFKVRTVMVANCGMLTGGVELLPQAKL
+DDGLLDVMVLSPRHALDWARIAVKTVTRSRSSIPVMHTEQAQRVKVEFAEPMPSQLDGD-
+---ATGVITALDARVQPDSLVVMLVAEDDASVRDDGVSAAAPVPQPAPRI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000081.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000081.fa
new file mode 100644
index 0000000000000000000000000000000000000000..719b5cc1ba2c8da1a085467f6bf2b28e2cd32eb3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000081.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00317
+MDESIDAAAREANRALLGRLPADRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRSGARAVPPAEEQARILPVIEALLAEDVVVSVDTRHTATARAALALGP
+VIVNDVSGLVHEPEMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRLLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGAPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRTAAAWVG
+A----HAPGEPVSEDVLP
+>AS2_ACLBLIBL_02338
+M------------------LR-SRVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRV
+GSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGV
+GYLNDIQGF-PDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR
+VSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLG
+ATV----GLP----VKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRS
+RDARDRGLDHA-------
+>KBS0714_MOLHKGIG_00076
+MDESIDAAAREANRALLGRLPADRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRPGARAVPPAEEQERILPVIEALLAEDVVLSVDTRHTATARAALALGP
+VIVNDVSGLAHEPDMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRFLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGTPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRTAAAWAG
+A----HAPGEPVSEDVLP
+>KD337_NAFOICDF_00258
+M---LPKPFHE--------LP-DRTLVMGILNVTPDSFSDGGAHDRVDAAVAHGLDLLAQ
+GADLIDVGGESTRTGATPVDPAEEQRRILPVVEALLAEGAVLSIDTMHTATARACLALGP
+VIVNDVSGLVHEPDMPALVAESGAPCILMHN--RGHAQVMDSLAHYEDTLGEVVRELSEV
+TDRFLAAGASPEQIILDPGLGF--AKAGEQNWELLRGLERIE-SLGRPVLVAASRKRFLG
+TVLAGEDGTPRPALDRDHATAAVSA--ISAAHGAWGVRVH---DVRSSVDAVRVGDAWRG
+AAPRPAGPGEARA-----
+>SA211_MHAAABBN_02089
+MDESIDAAAREANRALLGRLPAGRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRPGARAVPPAEEQERILPVIEALLAEDVVLSVDTRHTATARAALALGP
+VIVNDVSGLAHEPDMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRFLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGTPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRAAAAWVG
+A----HAPGEPVSEDVLP
+>TT9_LFPAFLNI_00070
+MDESIDAAAREANRALLGRLPADRTLVMGILNVTPDSFSDGGEHATVRAAVEHARRMVAD
+GADIVDVGGESTRPGARAVPPAEEQERILPVIEALLAEDVVLSVDTRHTATARAALALGP
+VIVNDVSGLAHEPDMPALIAASGAPYILMHN--RGNPQTMDGLAVYEDTVPDVVCELRDV
+AGRFLAAGVEPAQLIVDPGLGF--AKAGEQNWELLRGLEWLR-AMGHPVLVAASRKRFLG
+TLLADDDGTPAPPAARDAATAAISA--LAAAQGAWGVRVH---DVRASADAVRTAAAWAG
+A----HAPGEPVSEDVLP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000082.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000082.fa
new file mode 100644
index 0000000000000000000000000000000000000000..136b5cec45f4844cba59d147ff46253f8a0b8d3e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000082.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00326
+MPHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDAMV
+LLPGFDLVPGCVVEARPVGVFNMTDDGGGDAKLLCVPA-DKRFDHITELEHIEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWQGRADAEAELEASIARFDAAGEHSPTDEPQGRDVETEDP
+SPATEEGEEKDVPQGR
+>KBS0714_MOLHKGIG_00068
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+YLPGFDLVPGCVVEARPIGVFNMTDDGGGDAKLLCVPA-DKRYDHITELEHVEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFDAEGEESPTDEPQGRAVDTEEA
+QPATEEGEATDEPQGR
+>KD337_NAFOICDF_00266
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+FLPGFDLVPGCIVEARPVGVFNMTDDGGGDAKLLCVPA-DKRFDHIQELEDVEESLKQEI
+EHFFTRYKDLEPGKWVKADGWEGREAAEKELEASIERFAAEGEHSPSDEPQGRDVDTEEA
+APAAEQEA--------
+>KD337_NAFOICDF_00684
+MLFDVTIEIPRGSGNKYEVDHTTGRIRLDRAVFTSMVFPQDYGSIDNTLGDDGDPLDALV
+LLPR-PTFPGVVITVRPVGMLRMVDENGGDDKILTVPAGDDRFAQLRDITDVPEHTLAEI
+EHFFAHYKEIEHGKHVTTNGWADRAAAEAVIRTA--------QNAHTRHP----------
+----------------
+>SA211_MHAAABBN_02081
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+YLPGFDLVPGCVVEARPVGVFNMTDDGGGDAKLLCVPA-DKRYDHITELEHVEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFNAEGEESPTDEPQGRAVDTEEA
+QPATEEGEATDEPQGR
+>TT9_LFPAFLNI_00062
+MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV
+YLPGFDLVPGCVVEARPIGVFNMTDDGGGDAKLLCVPA-DKRYDHITELEHVEESLKQEI
+EHFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFDAQGEESPTDEPQGRDVDTEEA
+QPATEEGE----PQGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000083.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000083.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d340fa804b27b13917c69deaffe7ef5c439a856d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000083.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00331
+MP----------------------------------------------------------
+------------------------------------HQLDNADYGSCLNQDESFCPDGE-
+-WVQARTVDITRPDADPLYGRPTCTSDVAAGAGGAR----SFTLEEVRTLLLLDPTIESD
+NAGRGVRNAETNFYTDAGVETLSTTINGVPVELRATPVSFHWNYGDGTAPRVTHVGGHAQ
+AEFNTPTPTSHVYEETGEYTVTLTTVYIGEYREADGDWVLIPGTITLDAAPVTADIWRTV
+TRNVAEDCAADPSAWGCTGPIEAPDAP
+>AS2_ACLBLIBL_00544
+MP----------------------------------------------------------
+------------------------------------HQLDNADYGSCLNQDESFCPDGE-
+-WVQARTVDITRPDADPLYGRPTCTSDAAAGADGAR----SFTLEEVRTLLLLDPTIESD
+NAGRGVRNAETNFYTDAGVETLSTTINGVPVELRATPVSFHWNYGDGTAPRVTHVGGHAQ
+AEFNTPTPTSHVYKETGEYTVTLTTVYIGEYREADGDWVLIPGTITLDAAPVTADIWRTV
+TRNVAEDCAADPSAWGCTGPIEAPDAP
+>KBS0714_MOLHKGIG_01042
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------MLEPEIRSD
+NGGRGIRNAETNFYADAETRTLVTTLNGVEVELRATPVSFHWDYGDGSPTKTTSVAGQSQ
+PEFNVPTPTSHVYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTANIWRTI
+TRNVADDCSVDSSAWGCTGPIESAPAG
+>KD337_NAFOICDF_01735
+MTSRRGDFPACMAVLFALIFLVSAVTLVTPSQAHASSCDTAGRKAQLTDDSLIVGQRCHK
+SSIAEIVGDGLADDQEKSAKATSPTTKVTTLQNACYENLPEPGFENCATQQELICGDQNV
+AWLQPSTKDTARPEDAPVKGDAFCADGSAAPSAPPQPSRPAVSIDDMGEVIAPEPRILAD
+TDGRGVRNAETNFYSPEAVRHETAVIDGVSVEMRLTPVSFIWDYGDGTAPVTTDVGGNPQ
+DGFDVRTPTSHVYDETGTYEVTLTTVYTGEIRYPGQGWEAVPGTIRRTATPVTADIWTTS
+TRNVADDCSADASAWGCAGPVEAPNGG
+>SA211_MHAAABBN_00755
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------MLKPEIRSD
+NGGRGIRNAETNFYADAETRTLVTTLNGVEVELRATPVSFRWDYGDGSPTKTTSVAGQSQ
+PEFNVPTPTSHVYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTADIWRTI
+TRNVADDCSVDSSAWGCTGPIESTPAG
+>TT9_LFPAFLNI_00983
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------MSIDEVRTLLVLEPEIRSD
+NGGRGIRNAETNFYADAETRTLVTTLNGVEVELRATPVSFHWDYGDGSPTKTTSVAGQSQ
+PEFNVPTPTSHVYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTANIWRTI
+TRNVADDCSVDSSAWGCTGPIESAPAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000087.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000087.fa
new file mode 100644
index 0000000000000000000000000000000000000000..63d567ec5605dda5a3ba33da17024e08e523e036
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000087.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00392
+MTYPVVKDLARDGIPVRLCCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALARR
+GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWQSFDQLRLAIVSWIERTYHRRRRQAPLGRLTPVEFEMVQSVQAAAAA
+>AS2_ACLBLIBL_00411
+MTYPVVKDLARDGIPVRLCCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFLKR--------------------------
+----------PGSDEDS-------------------------------------------
+-----------------------------------------------------
+>KBS0714_MOLHKGIG_00626
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSAREWSDAHAANAVLDAHAGDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVRVRCCHWFRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLALDALQMALARR
+GGKAEVQGCRVHSDRGSQGGFNR--SSQHPLGITGGMGD----GKQGLGEE---------
+---------DQ------------------------------------------
+>KD337_NAFOICDF_02188
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYPWLAEPVSAREWSDAHAANAVFDAHADDP
+EFGYRFLADELRGRGLDVSDHQVLKACRLVRVRCCHSIRRGSGKRPGPAVHDDLVRRQFR
+ADKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSIDRRMSSQLAVDALQMALARR
+GGKAGVQGCRVHSDRGSQFRARRFVETLRVNSLIGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWDSFAQLRLAIVSWIERTYHRRRRQARLGKLTPVEFEMVQSVQAAAAA
+>SA211_MHAAABBN_00371
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALARR
+GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWQSFDQLRLAIVSWIERTYHRRRRQARLRKLTPVEFEMVQSVQAAAAA
+>TT9_LFPAFLNI_00605
+MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
+EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFA
+AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALGRR
+GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
+LNRRRWQSFDQLRLAIVSWIERTYHRRRRQARLGKLTPVEFEMVQSVQAAAAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000089.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000089.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6daa0128ce7fb879527e3b51bc2ac491fe7499a4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000089.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00402
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVMVLDLGLPGLDGIEVCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLAAHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDTDPARY
+IDTVRGVGYRMAEQ-----
+>KBS0714_MOLHKGIG_00630
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVIVLDLGLPGLDGIEVCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLAAHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDADPARY
+IDTVRGVGYRMAEQ-----
+>KD337_NAFOICDF_00452
+M-----------TGP---DLLLIEDDDRLGPLLRDLLS-LDWEV-----TWSP----TLA
+AARAELDRRLFAVLVVDRGLPDGDGVDLVRELRARGVAVPALLLTAYGELEDRVHGLDAG
+ANDYLVKPFEVAELQARLRALTRDYSGRGAGVE-----IGSWMFYPDNRTVESPYTGRIL
+-LTEKESALLAVLASAPDTAFTRAHLLSAVFEHG--EQEGTVDTYVHYLRRKTDRS---L
+VETVRGVGYRLGTP----T
+>KD337_NAFOICDF_01060
+M----------------------------ARLLMLTRAASAVEVLPALDLLTHDVERADP
+RAALAAGREDVDGVLLDATSGLAEARTLARDLASLAPEVPVVAVMAEGALT--AVGPEWS
+LADIVLTGAGPAEVDARVR-LLRPADAPVAGGAAERLAVGGVEI--DPVGYRARLDGRAL
+NLTFREFELLKHLAQSPGRAFSREQLLREVWGDDYFGGTRTVDVHVRRLRAKLGPDREQM
+IGTVRNVGYRFTPRPDGDA
+>KD337_NAFOICDF_02199
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVMVLDLGLPGLDGIEVCWRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLAAHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDADPARY
+IDTVRGVGYRMAEQ-----
+>TT9_LFPAFLNI_00601
+MNSGTGTGTDTGTGPAAGRVLVVDDEKPLARMVATYLERAGYEV-----ALTH----TGP
+AAVQAARVHEPDVIVLDLGLPGLDGIEVCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVG
+ADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERV-CGDLVI--DLATHEARVSGQVV
+QLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDVHIKNLRRKLDADPARY
+IDTVRGVGYRMAEQ-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000093.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000093.fa
new file mode 100644
index 0000000000000000000000000000000000000000..94096b490f778c3fee024b34eac712068c44d681
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000093.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00469
+MDVTFTPLDPAGADRDALVALLTENAWPFHTRPLVTRPEAEEAVDGGAWEDEDHRTFWIEHPEHGRVGVVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTALTRHVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYTQPEVVRHLLDEPWDE
+ATAREKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVARMDARNTASARLAETLGMRREAHHRQDWWSKGEWTDTLVYAMLASDRG-------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>AS2_ACLBLIBL_00641
+--------------------------------------------------------------------------------
+-----MAERFRGRGLGAQILAALTRHVFETMPAVDRFEGQTREDNIPMLRAFRRAGWVKEAHYRRGWPVEGGEPLASVAY
+AVLRQDWETGTTTPVPADVDVPSRRKRDVGAESNGHIPDWPMRTERLTLRPHREDDLGWLQEMYAQPEVVRHLLDEPWDE
+PTARQKLVRRIEWNDLAGPSGVASLVIEHAGVPVGDVILWLTNRERGVAEIGWALDPRHAGQGFAREAAAAMLALGFEVH
+GLHRVVAQMDARNTASARLAEAIGLRREAHHRQDWWSKGKWTDTLVYATLSSDRD-------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>KBS0714_MOLHKGIG_02265
+MDVTFTPLDPAGADRDALVALLTENAWPFHTRPRVTRPEAEKAVDGGAWEDEDHRTFWIEHPEHGRVGVVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTALTRHVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYMQPVVVRHLLDEPWDE
+ATARAKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVAQMDARNTASARLAETLGMRREAHHRQDLWSKGEWTDTLVYAMLASDRGVRG----------------------
+------------------------------------------------------------------------HL------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>KD337_NAFOICDF_00419
+MDVTFTPLDPAGADRDALVALLTENVWPFHMRPRITRSEAEEAVDGGAWEDEDHRTLWIEHPEHGRVGVVRLDELTDPTP
+LFDLRVTERFRGRGLGAPILTALTRLVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVEGGEPLASVAY
+AVLRQDWETGTTTPVPAEVDVPPQVEHGEGAAAVGPAPDWPLRTERLTLRPHREDDLGWLRDMYARPEVVRHLLDEPWDE
+ATARQKLAKRIAWDGLAGPSGAVSLVVEHRGVPVGDVILWLTDRERGVAQIGWALHPEHAGQGFAREAAAALLTLAFETY
+DLHRVVAQMDARNTASAQLAEAVGLRREAHHRQDWWSKGEWTDTLVYATLASDRG-------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
+>SA211_MHAAABBN_01960
+MDVTFTPLDPAGADRDALVALLTENAWPFHTRPRVTRPEAEKAVDGGAWEDEDHRTFWIEHPEHGRVGVVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTALTRRVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYMQPEVVRHLLDEPWDE
+ATARAKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVAQMDARNTASARLAETLGMRREAHHRQDLWSKGEWTDTLVYAMLASDRGGGGPSMTANGLLRSPHAARDREGVD
+SRGSPGVRTEVLEDLQVEKPLVRAGGLGEHRLVGADVDDLPHTEAGGLLRLKDRQVSVAGDAVDLGEPPRGPHLVCRPHH
+GPHTTQRDRPGGAAVVVMGDDPACRGQGPSLTHSPGGQQDQLVDFPHGDRVTAAFLLPVRERGAADGADGDVHGRSVGAG
+PHPGARGASSPVMLGIGLEARRVKARTTHPHRVHRIDAMTRTGAFTIAGLAAFAISTGILVLLLITGSETPRETMAFFAL
+IIGCYALSALCFAAAKRVLLALLSGALAVVSFPLALFIGYVVEMLQSQQ
+>TT9_LFPAFLNI_02198
+--------------------------------------------------------------------MVRLEDLTDPTP
+LFDLRVAERFRGRGLGAQILTAITRHVFETMPAVDRFEGQTREDNVPMLRTFRRAGWVKEAHYRRGWPVDGGEPLASVAY
+AMLRQDWASGTTTPVPADVDAPPPAGRKEGAAEGGRAPDWPLPTARLTLRPHREDDLGWLQEMYTQPEVVRHLLDEPWDE
+ATARAKLAKRITWDDLGGPSGAVSLVVEHAGVPVGDVILWLTDRERGVAEIGWALDPRHAGQGFAREAAAALLDLGFETS
+GLHRVVAQMDARNTASARLAETLGMRREAHHRQDLWSKGEWTDTLVYAMLASDRGVRG----------------------
+------------------------------------------------------------------------HL------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000094.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000094.fa
new file mode 100644
index 0000000000000000000000000000000000000000..42ef57342e855db24d657a15ef07e7fa99a7a145
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000094.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00489
+MTAQTP--ATPAVPETMKAVIMRAPGDVVVEEVDTPRVAKPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPADPDRLADYLAASDVLGTGWYAAVAANAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIAFSRHEDRAALAREFGADVIIAERGEEGAAKV
+KELTNGYGAHGVCEAVGTQESMDQALASVRPGGHVGFVGVSHDQTIDGSRLFGLEIHLEG
+GPAPVRRFLPELIERIQAGEIQPGRVFTARMPIDDAAEAYKAMDERREIKVLLEV
+>KBS0714_MOLHKGIG_02252
+MTAQTP--ATPAIPETMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLGAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGRQIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARRPIDDAAEAYQAMDERREIKVLLEV
+>KBS0714_MOLHKGIG_02276
+MTTETPTLAAPEIPATMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLTDYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARRPIDDAAEAYQAMDERREIKVLLEV
+>KD337_NAFOICDF_00435
+MTAQTP--TTPAIPETMKAVVMRAPGDVVVEEVDTPRVVQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYRAMDERREIKVLLEV
+>SA211_MHAAABBN_01951
+MTAQTL--ATPAIPETMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSRAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFAREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYRAMDERREIKVLLEV
+>TT9_LFPAFLNI_02183
+MTAQTL--ATPAIPETMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWP
+YRGHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVN
+AGEYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPG
+KTIAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQV
+RELTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFAREIHLEG
+GPAPVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYQAMDERREIKVLLEV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000097.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000097.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ad56e44796c950b6d5bd66c3bea2cff6115cb27f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000097.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00578
+---------------------------MFDAVAERYDLMNTVMT-------WGQEPRLVR
+HTVARANVPAHGRVLDLATGTGDLAFEVLRQHPDATVVGADISAEMMEVGRRR-EGGDRV
+EWVVADAQDLPFEDASFDSVTHGYLLRNVADIPAALAEQFRVLRPGGWMAALETSPPPAN
+IIRPFSTFYMHQVMPRLARVITDKPEAYEYLSSSTKAFHAPEEIADMLAHAGFVNIGHET
+HMFGTLATHWAMKPVA
+>KBS0714_MOLHKGIG_00604
+MPK-----------------------------------MSGIETAFCRSALWGRFARDII
+VPWSLGGQDLGGDVLELGAGSGQMAAALLQRSPGMRLTLTDIDERMVATARRRFPTSPRL
+TVQQADSTALPFAESSFDVVLSFLMLHHVVNWKAAVAEAARVLKPGGMLIGYDLT-----
+------------------------------------AWSSP-------------------
+---------------S
+>KBS0714_MOLHKGIG_02174
+MSQ-NPLPAPRGDAQRGAADHHDRVSAMFDAIAGRYDLMNAVMT-------WGQEPRLVR
+RTVARANIPAQARVLDLATGTGDLAFEVLKQHPDAQVVGADIAAEMMEVGRAR-AGGDRI
+EWVVADATDLPFEAGSFDAVTHGYLLRNVADIPATLAEQFRVLRPGGWVAALETSPAPDN
+VLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSSTKAFHTPDEVADLFAEAGFVNIGHET
+HMFGTLATHWAMKPVD
+>KD337_NAFOICDF_00505
+MSETSPSPLPRPASLAHDADHGARVSGMFDAIAGRYDLMNTVMT-------WGQEPRLVR
+RTVERANVPAAARVLDLATGTGDLALEILKQHPDAHVVAADFAPEMMEVGRTR-PNGDRI
+EWVEADALALPFADGEFDSLTHGYLLRNVANIPAALAEQFRVLRPGGWVAALETSPAPDN
+LIKPFSSFYMHRIMPRLARLITDRAEAYEYLSSSTRAFHTPEEIAGMLADAGFVNIGHEL
+HMFGTLATHWAMKPLD
+>SA211_MHAAABBN_01888
+MSQ-NPLPAPRGDAQRGAADHHDRVSAMFDAIAGRYDLMNAVMT-------WGQEPRLVR
+RTVARANIPAQARVLDLATGTGDLAFEVLKQHPDAQVVGADIAAEMMEVGRAR-AGGDRI
+EWVVADATDLPFEAGSFDAVTHGYLLRNVADIPATLAEQFRVLRPGGWVAALETSPAPDN
+VLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSSTKAFHTPDEVADLFAEAGFVNIGHET
+HMFGTLATHWAMKPVD
+>TT9_LFPAFLNI_02119
+MSQ-NPLPAPRGDAQRGAADHHDRVSAMFDAIAGRYDLMNAVMT-------WGQEPRLVR
+RTVARANIPAQARVLDLATGTGDLAFEVLKQHPDAQVVGADIAAEMMEVGRAR-AGGDRI
+EWVVADATDLPFEAGSFDAVTHGYLLRNVADIPATLAEQFRVLRPGGWVAALETSPAPDN
+VLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSSTKAFHTPDEVADLFAEAGFVNIGHET
+HMFGTLATHWAMKPVD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000099.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000099.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3d16a75ed9c6975600e9ddf268676086b0491680
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000099.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00595
+MRADARANRQDLLAAAGRLLEEQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLLDAVLED
+VVARVSGILHAFLDG------GGSADRRWRRLAEELAAVNLTSLVTAGDDLEAADRPQEA
+LIVEAEQVIISLTDRAVTEARRAGLVALGVTGTRYLTGLL-AVTRPPAGELLARHADQRD
+WLLGVYLRGLRP--
+>KBS0714_MOLHKGIG_02162
+MRADARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVRTLYRHFPTRRDLLDAVLED
+VVARTGGILQAFLDGVGGDGHGGGTEARWRRLAEDLGAVNLASLAAARDDFDPADRPPEA
+LIAEAERVILELADQVVAEARRAGLVGPDVTGADYLFGLL-MVTRSPECALLGHGPDQRG
+WLLDTYLRGLRP--
+>KD337_NAFOICDF_00518
+M-----------------------------------------------------------
+---------------------------------------------------QEEDTPPAE
+AMGRAEDAVMGLADRAVDLAREAGLVGDDVTGRAYMNGLI-AVTRPPLPALESCRDDLED
+WLLTVFLRGLRPAA
+>SA211_MHAAABBN_01875
+------------------------------------------------------------
+------------------------------------------------------------
+-------MILELADQVVAEARRAGLVGPDVTGADYLFGLL-MVTRSPECALLGHGPDQRG
+WLLDTYLRGLRP--
+>SA211_MHAAABBN_01876
+MRADARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLLDAVLED
+VVARTGGILQAFLDGVGGDGHGGGTEARWRRLAEDLGAVNLASLAAARDDFDPADRPPR-
+----------------------------------------------PSSP----------
+----------RPSV
+>TT9_LFPAFLNI_02107
+MRADARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLLDAVLED
+VVARTGGILQAFLDGVGGDGHGGGTEARWRRLAEDLGAVNLASLAAARDDFDPADRPPEA
+LIAEAERVILELADQVVAEARRAGLMGPDVTGADYLLWVMRFLARGPG------------
+--------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000101.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000101.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5dd0034d3a83fc70de6fcf544676285d4e394af2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000101.fa
@@ -0,0 +1,78 @@
+>AS2_ACLBLIBL_00658
+MAASPSPSDRAAEALGRTALQDAEGTRRVDLDVTGMTCASCVGRVERKLGKIEGVEASVNLPLERATVTVPASVSDQDLL
+DAVAKAGYTAAVRPDAQARPARRGRHDDGGTRPGADHAGHPDHR-------DH-ETPGEDHAG-HEG--HDDHMAHGPRA
+DVLRPRLIVAAILTVPIVLISMVPALQFPHWGWVALALSAPVALWCGWPFHSAAFRAARHGSSTMDSLVSVGVLVAWTYS
+AVELVLE----PGMTAHVGGTMAEM-MRHSLYFETAAVITTFLLLGRWLEARAKREAGRALRSLLDLGAAQATVLPNWDA
+QTPHPSTSAAATPVAAVSGDFSEVEAASTSDKSPQTHHDGGADALTERVIPAEELEPGDVVVIRPGEKVPTDAVVLEGTS
+AVDASLLTGESVPVEVGPGDEITGATVNTSGRLIARATRTGADTTLAQMGRLVSDAQTGKARVARLADRISAVFVPIVLV
+LAVLTFVVWMLVTGGDVAPALRAGVAVLVIACPCALGLATPVGLLAGTGRASQLGILIGGPEVLEDTRTVDTIVLDKTGT
+VTEGRMALSDV--------------------------HAFADDAALTE--DRILALAAAVEAGSEHPIARAIVAGARERG
+LTVPRVADFASTAGGGVTGTVALPE--------------AGSVRVAVGRGDLV-----GEPSPAQQAEFDAAEQAGATAV
+WVAVDGRVAGVLSVKDTVKPSSAAAIARLKELGLRPLLVTGDNAAVAAQVAAAVGIPAEDVVAGVRPEDKVDVVTRLQSE
+GRVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLDQVVQALDLSRRTLGIIRMNLFWAFAYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>KBS0714_MOLHKGIG_02122
+MTHP---------ASSTPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPAGVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPAGHAGHAGHAHTS--------EHGEEHAADHDGVDHHDHMAHGPSE
+DVLTPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFETAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAESLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATRVGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLG
+IAVLTFAVWMIVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRAAQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVAETGAS-----------RSAFVDETAPDQAADVLLTLAAAVERGSEHPIARAIVAGAEERG
+LTVPGVADFASTAGGGVSGLVALPHDDGAPGSGAHGAAGPDPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKETSADAIARLKELGLRPLLVTGDNAAVATQVAAAVGIPAEDVVAGVRPEDKVDVVRRLQSE
+GHVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFAYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>KD337_NAFOICDF_00575
+MTHP---------ASSAPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPADVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPA---GHAGHAHTS----EHGEGHGEEHAADHDGVDHHDHMAHGPGE
+DVLKPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFEAAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAESLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDAVTGATLNTSGRLVARATRVGADTTLAQMGRLVADAQTGKARVARLADRISAVFVPVVLG
+LAVLTFAVWMLVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRASQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVTDTGASRSASVAETDAPRSAFVAETAPDRATDLLLTLAAAVERGSEHPIARAIVTGAEERG
+LTVPDVADFASTAGGGVSGLVALPHDDGALASGAHGAAGPAPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKDTSADAIARLKELGLRPLLVTGDNAAVATQVADAVGIPAEDVVAGVRPEDKVDVVRRLQSE
+GRVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFLYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>KD337_NAFOICDF_00718
+M--------------STSAPPT--GGPDIELEIGGMTCASCANRIEKKLNKLDGVAATVNYATEKAKVTVPAGYDPSLLV
+AEVEKTGYTAALP-----KPK-----------DTT--------ANTS----E--TEAGEE---------EDSELTS----
+--LRHRLIGAIVLTVPVIAMAMIPALQFTYWQWASLALAAPVIIWGAWPFHKAAWTNLKHGAATMDTLISMGTSVALLWS
+LYALFLGTAGTPGMTHPFEFTIAPSDGAANIYLEVGAGVTMFILAGRYFEKRSKRQAGAALRALLELGAKEVAVL-----
+-------------------------------------RDG-----VEVKIPTSELAVGDEFIVRPGEKIATDGLVTSGSS
+AVDASMLTGESVPVEVREGDSVTGATVNAGGRLVVRATRVGSDTQLAQMAKLVEDAQTGKAEVQRLADRISGIFVPIVIV
+VAFITLGAWLGGG-FPVAAAFTAAVAVLVIACPCALGLATPTALLVGTGRGAQMGVLIKGPEVLESTRKVDTVVLDKTGT
+VTSGKMTLTDV-----------------------------ITEPGVDR--AELLRFAGALEDSSEHPIAQAIAKGATQEV
+GQLPTPEDFANVEGKGVQGIVE-------------------GTPVVVGRESLL-ADWSQKLSPEVAQAKAQAEGEGKTVV
+AIGWDGAARGILVVADTVKPTSAEAIRGLKEIGLTPVLLTGDNEAVARQIASEVGI--DEVIAEVLPKDKVDVVTRLQEE
+GKIVAMVGDGVNDAPALAQADLGLAMGTGTDVAIEASDITLVRGDLRAAVDAIRLSRKTLSTIKTNLFWAFAYNTAAIPV
+AALGMLNPMLAGAAMAFSSVFVVGNSLRLRGFTSVASK
+>SA211_MHAAABBN_01830
+MTHP---------ASSTPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPAGVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPAGHAGHAGHAHTSEHGEEHGEEHGEEHAADHDGVDHHDHMAHGPSE
+DVLTPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFETAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAQSLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATRVGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLG
+IAVLTFAVWMLVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRAAQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVAETGAS-----------RSAFVAETAPDQAADVLLTLAAAVERGSEHPIARAIVAGAEERG
+LTVPDVADFASTAGGGVSGLVALPHDDGALGSGAHDAAGPAPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKETSADAIARLKELGLRPLLVTGDNAAVATQVAAAVGIPAEDVVAGVRPEDKVDVVTRLQSE
+GAVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFLYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
+>TT9_LFPAFLNI_02060
+MTHP---------ASSTPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLEGVTASVNLPLEQATVTAPAGVSDEELV
+AAVEKAGYGATVR-----RPA-----------PPAGHAGHAGHAHTS----EHGEEHGEEHAADHDGVDHHDHMAHGPSE
+DVLTPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWPFHSAAFRAARHGSSTMDTLVSLGVLVSFSFS
+AVELILA----PDMTAHVGGTMAEM-AHHSLYFETAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLY-----
+--------------------------------DPETH--------DERTVPAESLAPGDVVLIRPGEKVPTDAEVLEGTS
+AVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATRVGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLG
+IAVLTFAVWMIVT-GDLPSALRAGVAVLVIACPCALGLATPVGLLAGTGRAAQLGILIRGPEVLEDSRTVDTIVLDKTGT
+VTEGRMALADVLVLDPAFVAETGAS-----------RSAFVDETAPDQAADVLLTLAAAVERGSEHPIARAIVAGAEERG
+LTVPGVADFASTAGGGVSGLVALPHDDGAPGSGAHGAAGPDPVRVAVGRGSVLETALDGGIPAEHRAAFEAAEQAGATAV
+WVAVGGRVAGVLSVRDTVKDTSADAIARLRQMGLRPLLVTGDNAAVAAQVAEAVGIPAEDVVAGVRPEDKVDVVTRLQSE
+GAVVAMVGDGVNDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAFLYNVLGIPV
+AALGLLNPMIAGGAMAASSVLVVLNSLRLTRYA----R
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000102.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000102.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d3227ad5761287d232e99cbaef8c720898882990
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000102.fa
@@ -0,0 +1,132 @@
+>AS2_ACLBLIBL_00681
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEAG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDAHQALDDARRKLAEMVTTADALPAPAGRGHDDAARPDAGPRGAAAG
+PDGESAAPEAPHSGLDWRRVMEPLAGLD-APRRLGAPPALAIGVELVAESSRNAFQQWGPAPAGEDQVREGRPLYVTLRP
+LKRGAKGTWIKGGLTWKNFQFGRAEFAPAQERAMRLIWRQLQAEDSYPTDAWFGLHSFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPAAVGLDVARAPDGGLDVAPSLDPA---------------PPGRGLAGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAERPVPEAVQQLVLAGGPVRVPAVDREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPDHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVAAARFSEQVLPLLQQAEHVRVDVTGHRPD
+YRELKSAPRIEVGTKATKNDWFDLGVQVSVDGHVLPFVELFTALVQGKTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPENTAVSRHQVGFWEDLKELADEVEEDPEWTAAVGRLAAVERLPEAPEVPGLQADLRPYQEDGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALSAHARQARPERPPFLVVAPSSVVSVWAAEA-QTFTPDLDVRVLDTTVRKRGTDVAAEAAG--
+ADVVVTSYTL-LRIDAGQFGGIDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLTDLWALLGV
+VVPGLFPSHRRFREAYVTPIETGEDP---ERMVALRRRVRPFMLRRSKEL---VAKDLPPKQEQVLNVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFKSLT---
+-----------------------------------LLRMLALAPQIVDEQYASVPSSKLERFLDDLTEVIAEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHMEVAHAYLDGSTRG-----------RADVIRGFR-EGQAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----RELLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AED---------------------------------------------
+>AS2_ACLBLIBL_01500
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----NLPLTDYQAKYYA--HELQRSYAND-----HVGKLAGL--------LFDAQVEPKPHQIDAA--LFALQTPFLPG
+VILADEVGLGKTIEAGIVISQYWAER--RRSILIVAPSSLRQQWQQELYEKFL--IPSAILDPKSKD---SLLAAAGGRS
+AQVLICSYEFALRHETSLLKA--WDLVVADEAHRLRNYWTGKTKAAEAVAHVVSGAHKTVLLTATPLQNKLEELYGLVSI
+FDPNYFYSLDAFRERYVKNRDLGGDDDLVERVATVSKRT----LRRDADKYIHFTKRLP------LTVEFTPSPDEARLY
+DLVNDYLQRDELFAFAGSQRHLSALIIRKRLGSSTYAVASTLENIANRLAEEVAAGQRRDGRGGLVTADFTVDDEITSEE
+LEEAEEIEGAGPASRPSSSPLDESLLEAMRAEVAELRDYAALARSITENQKAVKLGEALDLGFERLRE-LGAPQKAIIFT
+DSTKTQEYIARSLREAGRGDGLVLFNGSNNGPEQTAIYQAWLKANQDGDLITGIAAVDRRKALVDYFRTEG---TIMIAT
+EAAAEGINLQFCSMLVNYDLPWNPQRVEQRIGRVHRFGQKHNVVVVNFSNKGNIAEQRILELLTNKFQLFSSVFGASDEV
+-LGAIEDGLDFEKTISDILTRCRTADELDAAFRELEGQYASEISREMASAKAKVFDNLDPHVQDRLKAYDTQSGEVLNKF
+ERLLLAVTRHELDRFATFEGDGRAFVLNESPVQDVPTGRYFFKSQPLENAHQYRYASSLAQYVVDTSKGHETPARELTFS
+LGQSERVSSAIRALEGTSGELTVNLATFRMKARDEDVSESYMLAGALTDDGQWLDEEYVADILDLACISVGEQPVAIDES
+RFTPHLDARRAELEKEVQGRNSRYYDQQEELLYRNQQDRKAEHEGKIREYRAKEKEARKLARQADDPMEQLRLKKEARKW
+EQRAEEADEDFRDTRKKLRAEADKYLELIEQSLQGTQETEHLFTIRWRITT
+>KBS0714_MOLHKGIG_02098
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEDG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDADQALDDARRKLAEMVTTADALPAPAGRGHD-----GGGPAGLDA-
+PAADGAAPPPP-AGLDWRRVMEPLAGLH-GPRRVGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPVAVGLDVTAAPDGGLDVAPSLDPA---------------PPGPGLSGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAARPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPGHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVGAARFSEQVLPLLQRADHVRVDVTGDRPD
+YRELKAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVERLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALFAHARQARPEPPPFLVVAPSSVVSVWAAEA-EKFTPDLDVRVLDTTTRKRGTAVADEVAG--
+ADVVVTSYTL-LRIDAGQYGGLDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLSDLWALLDV
+VVPGLFPSHRRFRETYVTPIETGGDP---ERMAALRRRVRPFMLRRSKEL---VAKDLPSKQEQILQVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFTSLT---
+-----------------------------------LLRMLALAPQIVDDQYASVPSSKLERFLDDLTEVIGEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHLEIEHAYLDGSTRG-----------RADVIRGFR-EGEAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----REMLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
+>KD337_NAFOICDF_00595
+MAPGVSGDPLPHLRTEAIRALVGPTSADRGFDIAAEGGVLRVTYDASRLRLTSAVRGTAPQPYRQAVRLQPS-GETGPDG
+E-PLLEPTAGRCQCPVGEDCKHVAAALYEITRRHADAARHAAREELASRVTTADRLPSPE-RA-------GAAPARPDA-
+--------PAPEAGLPWRGVLESLAGLDGGPRRLAPPPDLAIGVELVAESSRNAFAQWGPAPAGEEHLREARLLYVIVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEYDPAQERALRLIWRQLQAEDSYPTEGWFGLHAFDSPRIWQLLAEAQEAGVELVPQ
+GILADVVLDAPVEVGLDVASAPDGGLEVAPSLAPAGGAGEGAPADDAAARPDAERLRDTHAIGSIGFYRADEEEDGTWTL
+HLLPAVRRVPEPVQEMVLAGRPVHVPTADREEFLGRIYPRLRAALDVGSADASVELPEFEPPVLRLQADFRPGHRLVLRW
+SWLYFDPPRELGL--GHDGLRDPRHEEAVLRAAAQVWPRVGRAEEQELEGVGAARFSESVLPQLQRLDHVRVDVTGERPD
+YRELKAAPRIEVSTKAAQNDWFDLGVQVSVDGHVLPFVELFTALVHGKTTLMLQDGTWLGLDHPAFDRLRALLSEAAALQ
+EWTPEHTTLSRHQVGFWEDLKELADEAEEDPEWTAAVGRLAAVERLPEAPAVPGLKAELRPYQEDGLRWLRFLHDQDL-G
+GILADDMGLGKTVQTLALMAYARAEHPDRPPFLVVAPSSVLSVWASEA-AKFTPGLDVRVLDTTTRKRGTSVTEAAEG--
+ADVVVTSYTL-LRIDAAQHADASWAGIVLDEAQFLKN----RASKVHQVARDLRAPFR-LAITGTPMENSLSDLWALLEV
+VVPGLFPSHRRFRETYVTPIETGEHP---ERMASLRRRVRPFMLRRSKEL---VAKDLPPKQEQVLRVELDAA--HRKVY
+DRV---LARER----------------RKVLGL----------------------------LGDMDGNRFTIFKSLT---
+-----------------------------------LLRMLALAPQIVDREYAAVPSSKLERFLDDLEEVLAEGHRVIVFS
+QFTSFLRVVAEEL-------------------DAMEVEHAYLDGSTRN-----------RAEVIQDFR-EGDAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAENQAVDRAHRIGQERTVMVYRMVSEGTI-EEKVLELQQRKAELFGALMDESDDS
+GAGAFTDSL--------------TADDI----RELLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
+>SA211_MHAAABBN_01805
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEDG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDADQALDDARRKLAEMVTTADALPAPAGRGHD-----GGGPAGLDA-
+PAADGAAPPPP-AGLDWRRVMEPLAGLH-GPRRVGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPVAVGLDVTAAPDGGLDVAPSLDPA---------------PPGPGLSGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAARPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPGHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVGAARFSEQVLPLLQRADHVRVDVTGDRPD
+YRELKAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVERLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALFAHARQARPEPPPFLVVAPSSVVSVWAAEA-EKFTPDLDVRVLDTTTRKRGTAVADEVAG--
+ADVVVTSYTL-LRIDAGQYGGLDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLSDLWALLDV
+VVPGLFPSHRRFRETYVTPIETGGDP---ERMAALRRRVRPFMLRRSKEL---VAKDLPSKQEQILQVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFTSLT---
+-----------------------------------LLRMLALAPQIVDDQYASVPSSKLERFLDDLTEVIGEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHLEIEHAYLDGSTRG-----------RADVIRGFR-EGEAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----REMLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
+>TT9_LFPAFLNI_02038
+MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAPSPYRVQVQLQEAYDDAAEDG
+AGALMEPVGGRCTCPVGTDCKHVAAALYQVVRLDADQALDDARRKLAEMVTTADALPAPAGRGHD-----GGGPAGLDA-
+PAADGAAPPPP-AGLDWRRVMEPLAGLH-GPRRVGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRP
+LKRGAKGTWIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLAEAREVGVELVPL
+GLLTDVVLEAPVAVGLDVTRAPDGGLDVAPSLDPA---------------PPGLGLSGVHAVGGIGFYRV-ELTDEEAVL
+HLIPAARPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGALPVTSGDASVELPEFEPPVLRLRADFRPGHELVLRW
+SWLYFDPPRELGLDAGGDPLRDTRHEDAVLRAVAELWPRAGRAEEQVLEGVGAARFSEQVLPLLQRADHVRVDVTGDRPD
+YRELKAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLILADGSYLGLDHPAFDRLRALLSEAATLQ
+EWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVERLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDL-G
+GILADDMGLGKTVQTLALFAHARQARPERPPFLVVAPSSVVSVWAAEA-EKFTPDLDVRVLDTTTRKRGTAVADEVAG--
+ADVVVTSYTL-LRIDAGQYGGLDWGGVVFDEAQFLKN----RAAKVHTVARDLRAPFR-LAITGTPMENSLSDLWALLGV
+VVPGLFPSHRRFRETYVTPIETGGDP---ERMAALRRRVRPFMLRRSKEL---VAKDLPSKQEQILQVELEPA--HRKLY
+DRV---LQRER----------------RKVLGL----------------------------LGDMDGNRFTIFTSLT---
+-----------------------------------LLRMLALAPQIVDDQYASVPSSKLERFLDDLTEVIGEGHRVIVFS
+QFTSFLRVIAEEL-------------------DHLEIEHAYLDGSTRG-----------RADVIRGFR-EGEAPVFLISL
+KAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIGQERTVMVYRLVSEGTI-EEKVLELQRRKAELFGALMDESDDS
+GAGAFTDSL--------------TAEDI----REMLG-------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---AEE---------------------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000103.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000103.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4563df984f9d1f61fa6f504875ae2275d36e4aee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000103.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00685
+MSHVTRGGTMTDTTTARPMRPTHHDDDPPVRGIGHLRHPVVSGGLI----DGAMAAQGLL
+ASPRPD------------------------------------------------------
+------------------------------------------------------------
+------------------------------
+>KBS0714_MOLHKGIG_02093
+---------MTDTTTARPKRPAHRDDGPPVRGIGHLRHPAVSGGLIGVIGGGAFLFGGIA
+GLPAEHRATLRGIAISLISFTLVVVLLRRRMLPTVPTPARGALRVYGIAVVAMLAFLPVT
+RLVALALDAPTAQIALVAAVVGGHFLPFARAFQAPVFWWIGGAMAALGLAGAALAALGDP
+VAGPAGAAAAGVAMLVIVAAQGLLASPRQD
+>KD337_NAFOICDF_00555
+MER----------------------DSTHARGIAHPMHPAVLGAVVGMVGGSLFMLLSRP
+ELPFPWPTVTLVAWIALLAAAAWAVFLAPRRLRDVGAPSRHAGPIYGLSVLGMVALIIAS
+PHLVRALGIEAAQPAVVVMAVGLHFIPFASAFGARVFAWLGGSLTAIGLAGVIAAAVVGA
+PAGAVAAVLAGAAMLAFLAVDARRGA----
+>KD337_NAFOICDF_00601
+MSHVMRGGTMTATTTARPMRPTHHDDDPPVRGVGHLRHPVVSGGLI----DGAMAAQGLL
+ASPRQD------------------------------------------------------
+------------------------------------------------------------
+------------------------------
+>SA211_MHAAABBN_01800
+MSHVMRGGTMTDTTTARPMRPAHFDDDPPVRGIGHLRHPVVWGGLIGVVGGGAFLFGGIA
+GLPAEHQGTLRGSAIALIGFTLVVVLLRRRVLPAVQAPARGA------------------
+-----STGSPSSR------------------------CW---------------------
+-----------------------RSSP---
+>SA211_MHAAABBN_01801
+------------------------------------------------------------
+----------------------------------------------------MLALLPVT
+RLVALALDAPTAQIALVAAVVGGHFLPFARAFQAPVFWWIGGAMAVLGLAGAVVAVLGDP
+VAGPAGAAEAGAAMLVIVAAQGLLASPRQD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000107.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000107.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6b30e092d82eb15498ad03d1214502c19d1938a8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000107.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00771
+MA----------EFDGKVALVTGGGSGIGEACAKDLARGGAKVLVTDINLE-AAERVAEE
+IKADGGEAAAYRLDSASPDDNEKAVAFAEETFGALHLAVNNAGIGAGTEPAGELKIEDWD
+RVIDIDLNGVLYGMRHQLPAMERAGGGAVVNMASIHGTVATGLGASAYTAAKHGVVGLTK
+QAGVDYGPRGVRVNAVGPGYIETPLLAELPDEVHEALVAKHPIGRLGRAEEVAHLVSFLL
+SDKASFLTGAYYLVDGGY-TAP
+>AS2_ACLBLIBL_01745
+MADQTTPTAADAKASGRSVLVTGGNRGIGLAIARAFAANGDRVAVTSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEAHGPVEVLVANAGI-TNDQLLLRMSEEDFT
+SVVDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLGEDLKAQYKKSIPAGRFAQPEEVADVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+>KBS0714_MOLHKGIG_01147
+MADQTTTPTADAQAAGRSVLVTGGNRGIGLAIARAFAANGDRVAITSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEVHGPVEVLVANAGI-THDQLLLRMSEDDFT
+SVIDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+>KD337_NAFOICDF_01639
+MAEQT-------EPGGRSVLVTGGNRGIGRAIAEAFLANGDRVAVTSRSGEGGPEGAL-T
+VAADVTDAASV----------DAAFRAVEEAHGPVEVLVANAGV-TNDQLLLRMSEDDFT
+SVVDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLIGMAR
+SITRELGARGITANVVAPGYIDTEMTRSLDEELKAQYRKSIPAGRFAEPEEVADVVRWLA
+SPGAGYVSGAVIPVDGGLGMGH
+>SA211_MHAAABBN_00866
+MADQTTTPAADAQAAGRSVLVTGGNRGIGLAIARAFAAHGDRVAITSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEVHGPVEVLVANAGI-THDQLLLRMSEDDFT
+SVIDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+>TT9_LFPAFLNI_01097
+MADQTTTPAADAQAAGRSVLVTGGNRGIGLAIARAFAAHGDRVAITSRSGE-GPEGVL-A
+VRADVTDAASV----------DAAFREVEEVHGPVEVLVANAGI-THDQLLLRMSEDDFT
+SVIDTNLTGAFRVVQRATKGMMRLKRGRIVLVSSVVGLLGSP-GQVNYAASKSGLVGMAR
+SITRELGARGVTANVVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLA
+SDEAAYISGAVIPVDGGLGMGH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000110.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000110.fa
new file mode 100644
index 0000000000000000000000000000000000000000..61c39a59aba4605136c2acc59c34bbdc2ded4530
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000110.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_00803
+M---TETPDTSRASVPAVVGVLGGGRMGGGIAHAFLTSGSSEVVVVERDPQSAEAAKERI
+ESDLAASLERGKLDGD-LDVWAERLTVSVD-RADFARCDLVVEAVFEDMQVKIDALTDVE
+SHLREDAWLATNTSSLSVDEIATHLRRPERFCGLHYFNPVPASKLVEVVIGAQTGDELKA
+LTTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDYSK
+G
+>KBS0714_MOLHKGIG_02018
+MTDQQHTPDTVPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAEAAKERI
+EADLAASLERGKIDGD-LDEWAQRLTVSVD-RADFARCDLVVEAVFEDMQVKIDALTDVE
+AHLREDAWLASNTSSLSIGEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+>KD337_NAFOICDF_00762
+MTENQQT----TGSVPSIVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAEAAQERI
+VADLAASLERGKIDGD-LNVWAQRLTVSVD-RTDFARCDLVVEAVFEDMQVKIEALTDVE
+AHLREDAWLASNTSSLSIDEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+>SA211_MHAAABBN_00095
+MGQTQK------------VAVIGAGAMGSQIAMLAAMAG-CQTTMVDVDQERLDAARDQV
+LQTAQRQAERGRLEADAVEQAAARLTTEPDLAAAVAEADVVVEAIIEDLEAKRDLFAQLG
+EHTRPDTILATNSSSIVSSRLA-QIPHPERVCNMHFFNPALVMRLVEVVGGDHTSQKTIE
+TVKALAERMGKTPVVVRQEIFGFIANRIVAAIFDEAISLYEQGIASAEDIDTAVTHGLGH
+PIGPFALLDLTGIDVNVGIKRLEAQETGDPSRGPSQTLLDLMAQGRLGRKTGHGFYEYGD
+R
+>SA211_MHAAABBN_01727
+MTDQQHTPDTAPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPRSAEAAQERV
+ESDLAASLDRGKIDGD-LDEWAQRLTVTVD-RADFARCDLVVEAVFEDMQVKIEALTDVE
+AHLREDAWLASNTSSLSIDEIATHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-NAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+>TT9_LFPAFLNI_01955
+MTDQQRTPDTAPSSVPAVVGVLGGGRMGGGIAHAFLVSGSSEVVVVERDPQSAQAAKERI
+EADLAASLERGKIDGD-LDEWAQRLTVSVD-RADFARCDLVVEAVFEDMQVKIEALTDVE
+AHLREDAWLASNTSSLSIDEIASHLQRPERFCGLHYFNPVPASKLVEVVIGEQTGAELQA
+LSTEWVRGLGKTPVVVK-DAPGFASSRLGVAIALEAIRMVEEGVASPEDIDAAMVLGYKF
+PVGPLALTDIVGLDVRLGIAEYLESQLGE-RFAPPQLMRDMVARGELGRKSGKGFFDY--
+R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000111.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000111.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7a4771a556c3d6c668a0d01cf6c1954fdb921790
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000111.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00806
+-MAR------YITRNPATGETLEEFAELPASEVESVIERADTAYRAWRERPVAERAAVLA
+RAADLYEERAEQLAQDVTTEMGKPISAARGEMKTVAGIFRYYAEQGPAMLEHERIEVAGG
+GTAYVRRDPVGVLLGVMPWNFPHYQIARFAAPNLLLGNTMILKHAGICARSALNVEQLLL
+DAGLPEGAFVNAFIGHEAVAQIVADERVQGVSLTGSDKAGQIIGEQAGRNVKKAVLELGG
+SDPFIVAGDADVARAAKDAVSGRCVNSGQTCTSSKRFIVVEEHYEQFLSAFVEGMRAVPH
+GDPTD-ESTVVGPLSSPEAVQEVHELVQDAVAHGATLHVGGEPGEGP---GAYYPPTVLT
+DVDESARAFREEIFGPVAVVHRVKDLDAAIELANDSPYGLSSSVYTTSAEVAEEVSARLE
+TGMVWVNSTSKSSAELPFGGVKRSGIGRELGTLGIEEFANHKLVRSPEGLIGA
+>AS2_ACLBLIBL_02161
+-MTTTSASQGYRTINPATGELLKSFDTATDQQIADALDASQAAYEQWSQKSVAERAAVVK
+RISELLAERSKDIATLITTEMGKSLGAAVGEVRFGAQIFAYYADNAEELLADQPIKDFSG
+QEAFVERLPLGPLLGIMPWNFPVYQVARFVAPNLILGNTILLKHSEINPQTAALLEDLFR
+EAGLPEGVYQNLYATHEQVSTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARQAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRASAMKA
+ADPTSRDEDVYGPLSSESAADGLAEQIKAAKDAGATVHVGGERVSGPAGEGFYVSPAVIT
+DVDQDNPAYTQELFGMAAVVYKVSSPEEAVALANDSQYGLGGAVFSTDLDEARRVADQLE
+VGMANVNLPSAAGANLPFGGVKRSGFGRELGPFAVDEFANKRLYAVKGPLQG-
+>KBS0714_MOLHKGIG_00769
+-MTTTSASQGYRTINPATGELLKSFDNATDQQIADALDASQAAYEQWSRKSVAERAAVVK
+RISELLAERSKDIAAVITTEMGKSLGAAVGEVRYGAQIFGYYADEAEELLADQPIKQFSG
+QEAFVQRLPLGPLLGIMPWNFPVYQVARFVAPNLVLGNTILLKHAEINPQVAQLLEELFT
+EAGLPEGVYQNVFATHDQISTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSEMKP
+GDPTSRDADVYGPLSSESAADGLAEQIAEAKQAGATVHVGGERTSGPEGEGFYVSPAVIT
+DVDQENPAYTQELFGMASVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLE
+VGMANVNLASAAGANLPFGGVKRSGFGRELGPLALDEFANKRLYAVQGPLEG-
+>KD337_NAFOICDF_02057
+MTTTTSASQGYRTINPATGELIKQYDNATDQQVQDALAASQAAYEQWAATTVAERAGVVK
+RISELLAERSKDIAALITTEMGKSLGGAIGEVRFSAQIFAYYADNAEELLADQPIKDFSG
+QEAFLEKLPLGPLLGVMPWNFPVYQVARFAAPNLVLGNTILLKHSEINPQTAQLLQDLFE
+EAGLPAGVYQNLYATHDQISTIIADPRVQGVSLTGSERAGASIAEQAGRHLKKCVLELGG
+SDPYIVLSAPDARQAAREALQTRMGNWGQACNSNKRMIVMEDLYDEFVDELVKQSTALKP
+GDPTSRDEDVYGPLSSESAADGLAAQIRDAKEAGATV-VGGERLSGPSGEGFYVSPAVIT
+DVDQENPAYSQELFGMASVVYRVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVAEQLE
+VGMANVNLPSAQGANLPFGGVKRSGFGRELGPFAVDEFANKRLYAVKGDLQG-
+>SA211_MHAAABBN_00499
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------MQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSAMKP
+GDPTSRDADVYGPLSSESAADGLTEQIAAAKEAGATVHVGGERVSGPEGEGFYVSPAVIT
+DVDQENPAYTQELFGMAAVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLE
+VGMANVNLASAAGANLPFGGVKRSGFGRELGPMAVDEFANKRLYAVQGPLEG-
+>TT9_LFPAFLNI_00733
+-MTTTSASQGYRTINPATGELLKSFDNATDQQIADALDASQAAYEQWSRKSVAERAAVVK
+RISELLAERSKDIAAVITTEMGKSLGAAVGEVRYGAQIFGYYADEAEELLADQPIKQFSG
+QEAFVQRLPLGPLLGIMPWNFPVYQVARFVAPNLVLGNTILLKHAEINPQVAQLLEELFT
+EAGLPEGVYQNVFATHDQISTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGG
+SDPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSAMKP
+GDPTSRDADVYGPLSSESAADGLTEQIAAAKEAGATVHVGGERVSGPQGEGFYVSPAVIT
+DVDQENPAYTQELFGMAAVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLE
+VGMANVNLASAAGANLPFGGVKRSGFGRELGPMAVDEFANKRLYAVQGPLEG-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000113.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000113.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8fd07d6a228deaeaf1f77c5aa9166920f1af36a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000113.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00875
+MTLAIVVSVLAVLLLIVGVVGTVYPILPGSMLILVTAVAWAWILGSGASWTFGLLAAGLA
+VAGMSASAVLTGRRLLRERVTRGPIAAGVVGAIVGFFVIPVVGLFIGFAVGLFGSQWART
+KDARAALASSWGALKAMGLGMLVELGCAMLALVSVGVGILVHFV-F
+>KBS0714_MOLHKGIG_01983
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWART
+RDARAALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGLTA
+>KD337_NAFOICDF_00810
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGLIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVAGLFLGFAVGLFASQWART
+RDARTALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGVTA
+>KD337_NAFOICDF_00823
+MTFAILVSLLAVLLLIVGLVGTVYPVLPGSVLNAVVSLAWAWVLGSVASWTFGLIACAFS
+IAGMSASAALTGRRLVKERIPRGPILTGVAAAVVGFFVIPVVGVFVGFAAGLFGAEWARR
+RDARAALTSSWGALKAMGLGMLVEFGCAMVALASVGAGALVHVLSL
+>SA211_MHAAABBN_01677
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWART
+RDARAALSSSIGALTAMGMGMLVEFCCALGSLTAVGVGALVHGLTA
+>TT9_LFPAFLNI_01909
+MTPA-LISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLA
+VAGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWART
+RDARAALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGLTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000114.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000114.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d8132227496f58c604ebb2143ceca389e0fd50de
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000114.fa
@@ -0,0 +1,54 @@
+>AS2_ACLBLIBL_00882
+MPPSQDGAELVQLGVIGVIVLVVFFYGGTMLMSLAISRRKENADAYMTAGNKIGFGVSAASMTATWIWASSMYASVTAGY
+TYGVSGPIHYGLWGALMILFIYPFGRRIRKVAPRAHTLAEVMYARHGRSSQLMLAGSNVLGSVISLTSNFIAGGALIAIL
+SPLSFGAGILIVAAGVLLYTLWSGFRASVLTDFAQVMAMLGATVVIIPAVFFAAGGPGMFEAGVQAGNVTAQQQDFFSSE
+AFMNQGAPYIAAVLAYAIGNQTIAQRLFAVREDLIKPTFITATVGYGGTVIGVGMIGVMALYLGVQPLDGDVNNLLPQMV
+SSYLPLLVVALAFLMIIGSLSSTADSDLSALSSIVMTDVYGQSVGRENANPKTMLLIGRVTMIVATAAALYFATARFNIL
+DLLVFVGALWGCLVFPVIASFYWRKVTNAAFTVGVLAALAVFLPVRFEWIPLTGAWALVVEALAILGVGVVLGIMAFGFF
+GLRAAVVVGALATAATAFVGFGFLRDYATLSGSLVAYAVSFLVCWGMSVRSGQDFDFDRIARVTGDFDPATDDAADRPVA
+QPAGARAS
+>KBS0714_MOLHKGIG_01975
+MPPSQDAASLTQLGVIGVILLVVLFYGGTMIMSVAISKKKENADAYMTAGNQIGFGVSAASMTATWIWAASMYASVTAGY
+TYGVSGPLHYGL--------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------
+>KBS0714_MOLHKGIG_01976
+--------------------------------------------------------------------------------
+----------------MILFIYPFGRRIRAVAPRAHTLAEVMYARHGRSSQLMLAGSNVLGSVISLTSNFIAGGALISLL
+SPLSFGAGILIVAAGVLLYTLWSGFRASVLTDFAQVMAMLGATVIIIPAVFFAAGGPDMFQAGVEAGHVTAQQQSFFSSD
+AFMNQGAPYIAAVLAYAIGNQTIAQRLFAVREDLIKPTFITATLGYGGTVIGVGMLGVMALYLGVEPLDGDVNNLLPQMV
+ADHLPLALVALAFLMIIGSLSSTADSDLSALSSIVMTDVYGQSVGRKNADPKTMLLIGRITMIVATAAALYFATAKFDIL
+DLLVFVGALWGCLVFPVIASFYWGRITNVAFTVSVLAALTVFLPVRFEWIPIEGAWAFVVETLAILGVGVVLCIMCFGFF
+GLRPAVVVGAIASVVMLFLGYGFLRDYATLTGSLVAYAVSFLVCWGLSVRSGQDFDFDRIARVTGDFDPATEDL---PQV
+ERASAPVS
+>KD337_NAFOICDF_00817
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------MSVLAALAVFLPVRFEWFPLEGAWAFVVETLAILGVGVALGIMCFGFF
+GLRPAVVVGAIASVVMLFLGYGFLRDYATLTGSLVDYAVSFLVCWGLPVRSGQDFDFDQIARVTGDFDPATEDL---PQV
+ERVAASVS
+>SA211_MHAAABBN_01669
+MPPSQDAASLTQLGVIGVILLVALFYGGTMIMSVAISKKKENADAYMTAGNQIGFGVSAASMTATWIWAASMYASVTAGY
+TYGVSGPLHYGLWGALMILFIYPFGRRIRAVAPRAHTLAEVMYARHGRSSQLMLAGSNVLGSVISLTSNFIAGGALISLL
+SPLSFGAGILIVAAGVLLYTLWSGFRASVLTDFAQVMAMLGATVIIIPAVFFAAGGPGMFQAGVEAGHVTAQQQSFFSSE
+AFMNQGAPYIAAVLAYAIGNQTIAQRLFAVREDLIKPTFITATLGYGGTVIGVGMLGVMALYLGVEPLDGDVNNLLPQMV
+ADHLPLALVALAFLMIIGSLSSTADSDLSALSSIVMTDVYGQSVGRQNADPKTMLLIGRITMIVATAAALYFATAKFDIL
+DLLVFVGALWGCLVFPVIASFYWGRITNVAFTASVLAALAVFLPVRFEWIPLEGAWAFVVETLAILGVGVVLGIMCFGFF
+GLRPAVVVGAIASVVMLFLGYGFLRDYATLTGSLVAYAVSFLVCWGLSVRSGQDFDFDRIARVTGDFDPATEDL---PQV
+ERASASVS
+>TT9_LFPAFLNI_01901
+MPPSQDAASLTQLGVIGVILLVALFYGGTMIMSVAISKKKENADAYMTAGNRIGFGVSAASMTATWIWAASMYASVTAGY
+TYGVSGPLHYGLWGALMILFIYPFGRRIRAVAPRAHTLAEVMYARHGRSSQLMLAGSNVLGSVISLTSNFIAGGALISLL
+SPLSFGAGILIVAAGVLLYTLWSGFRASVLTDFAQVMAMLGATVIIIPAVFFAAGGPDMFQTGVEAGHVTAQQQSFFSSD
+AFMNQGAPYIAAVLAYAIGNQTIAQRLFAVREDLIKPTFITATLGYGGTVIGVGMLGVMALYLGVEPLDGDVNNLLPQMV
+ADHLPLALVALAFLMIIGSLSSTADSDLSALSSIVMTDVYGQSVGRQNADPKTMLLIGRITMIVATAAALYFATAKFDIL
+DLLVFVGALWGCLVFPVIASFYWGRITNVAFTASVLAALAVFLPVRFEWIPIEGAWAFVVETLAILGVGVVLGIMCFGFF
+GLRPAVVVGAIASVVMLFLGYGFLRDYATLTGSLVAYAVSFLVCWGLSVRSGQDFDFDRIARVTGDFDPATEDL---PQV
+ERASAPAS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000118.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000118.fa
new file mode 100644
index 0000000000000000000000000000000000000000..97cc9f8507b0d89cd0309ec6690983f6515debfa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000118.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01065
+MQTPATVHLVRHGEVHNPDRVLYGRLPEFGLSELGRQMADGVAAWFLERAEQTGRRPDVV
+AASPLTRAQQTAEPIAAALGRPLATEPDLIEAENDFEGMSQVAA-SLKRNPRLWPKLRNP
+LRPSWGEPYRQQAARMLAVVDRVRDEAEAAGGPGAEAVLVSHQLPIWVTRLAVEGRPLWH
+DPRRRECSLTSVTSLVFEEGRALPRVEYHEPNQALLKDASSLPGA
+>AS2_ACLBLIBL_02644
+M-SDKLLHLVRHGEVHNPDRVLYGRLPGFRLSEPGHRMAEAAAL----ELAGSDRVVARL
+LASPLERTRQSARPIASALGLEVSIEERIVEPANVFEGMVNSGSDSAFRQPRYWYRFVNP
+FRPSWGEPYRQIAARVREAMDEAWETTRD-----GDIVMVSHQAPIWIAHLDVAGKPLFH
+NPATRRCELSSITSFE-KRGERWFEVDYRTPAAGLVDDAVDVGAV
+>KBS0714_MOLHKGIG_01809
+MQTLATVHLVRHGEVHNPDRVLYGRLPEFGLSELGHEMARGVAAWFAERAAQTGRAPAVV
+AASPLTRAQQTAAPLAAAFDLPLVTEPDLIEAENAFEGMSQVAA-SLKRNPRLWPRLRNP
+LRPSWGEPYRAQAARMLAVVDRLRGEAVAADGPGAESVLVSHQLPIWVTRLAVEGRPLWH
+DPRRRECSLTSVTSLVYEEGRGVPRVEYHEPNQALLKDASSLPGA
+>KD337_NAFOICDF_01000
+MQTLATVHIVRHGEVHNPDRVLYGRLDGFGLSELGQRMAVGVAEWFLDRATELQRRPAIV
+AASPLLRAQQTAAPIAGAFATQLRTEQDLIEAENTFEGMSDVAA-TLRRSPRLWPLLRNP
+LRPSWGEPYRQQAARMLAVVDRVKDEAVDALGPGAEAILVSHQLPIWVTRLAVEGRPLAH
+DPRRRECSLTSVTSLVFEDGRALPRVEYHEPNAALLKDASSLPGA
+>SA211_MHAAABBN_01506
+MQTLATVHLVRHGEVHNPDRVLYGRLPEFGLSELGHEMARGVAAWFAERAAQTGRAPAVV
+AASPLTRAQQTAAPLAAAFDLPLVTEPDLIEAENAFEGMSQVAA-SLKRNPRLWPRLRNP
+LRPSWGEPYRAQAARMLAVVDRLRGEAVAADGPGAESVLVSHQLPIWVTRLAVEGRPLWH
+DPRRRECSLTSVTSLVYEEGRGVPRVEYHEPNQALLKDASSLPGA
+>TT9_LFPAFLNI_01730
+MQTLATVHLVRHGEVHNPDRVLYGRLPEFGLSELGHEMARGVAAWFEERAAQTGRAPAVV
+AASPLTRAQQTAAPIAAAFDLPLVTEPDLIEAENAFEGMSQVAA-SLKRNPRLWPRLRNP
+LRPSWGEPYRAQAARMLAVVDRLRGEAVAAEGPGAESVLVSHQLPIWVTRLAVEGRPLWH
+DPRWRECSLTSVTSLVYEEGRRVPRVEYHEPNQALLKDASSLPGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000123.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000123.fa
new file mode 100644
index 0000000000000000000000000000000000000000..798ad8b0c11f47411b5f5787800e386d32048021
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000123.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_01197
+MPMRVLVTGGAGYLGSHTVVVLLEAGHDVLVLDSLVAGSTAPLERAAELAGVALGGRRLD
+LVVADIRCPADYRAALEAFAPEAMVHFAGLKSPAESLSRPADYYDVNVGGTAAVAAAALA
+AGARTVLFSSSATVYGDRAPVPVDETAPTDPVSPYGRSKLMAEQVLRDVCATTDGVGLAM
+LRYFNPVGAHPSGRLGEDPRGVPANLMPFVARVATGAYPELQVFGADFPTRDGSAVRDFI
+HVMDLAEAHLAALAWLAARRGDGAEPTTRVWNIGRGEGVTVFEMVRAFEEVTGARIPCRV
+TARRAGDIAESCAAVDAVGAEVGWRARRDVTAMVRDLWAWQRAHPHGFGTGAA
+>AS2_ACLBLIBL_01209
+--MRVLVTGGAGFLGSHTVSVLLDAGHDVLVLDSLVSSTTVPLERIADLAGVTFGGSRLR
+FHRADVREPTSYREAVVAFGPDAVVHFAGLKSPTESLADPASYYTVNVAGTAAVAEVAGG
+AGVRAFLFSSSATVYGDEAPVPVGEDAAVAPVTPYGHSKLMAEQVLRHMHEAGRHMGVAV
+LRYFNPVGAHPSGRLGEDPQGVPANLMPFVARVAGGRYEQLNVFGADFATRDGSAVRDFI
+HVMDLAEAHVATLEWMVAQPGD--EVGVRVWNIGRGEGVTVFEMIQAFERVTGRPVPFQV
+VGRRPGDIAASCASVDAIAATVGWRASRDTDAMVRDLWAWQQANPSGYAGDAP
+>KBS0714_MOLHKGIG_01681
+--MRVLVTGGAGYLGSHTVLTLLEAGHDVLVLDSLVTATTTSLERVAELAETRLGGSRLR
+LHVADIRRPEDYRGALADFGPAALVHFAGLKSPTESMTRPAAYYDVNVGGTAAVAEAALA
+AGARTVLFSSSATVYGDRAPVPVAEDAATDPVSPYGHSKLMAEQVLRDVCATVDGGGLAM
+LRYFNPVGAHPSGRLGEDPSGVPANLMPFVARVASGAYPELRVFGADFDTRDGSAVRDFI
+HVMDLAEAHVAGLEWLAARVAAGGGTTTRVWNIGRGEGVTVFEMVRAFEAVTGGRIPYRV
+VERRPGDIAESCAAVDAIGAEVGWHARRDVTAMVRDLWAWQEANPAGFSPRTE
+>KD337_NAFOICDF_01126
+--MRALVTGGAGYLGSHTVTTLLDAGHDVLVLDSLAGAGRAGLERAAEVCGVGLGGARLR
+LVVADIRRPEDWADEVVAWAPDTVVHFAGLKSPTESMASPAEYYSVNVGGTAHVAEAAVR
+AGARTLLFSSSATVYGDRAPVPVAESAPIDPVSPYGRSKAMAEQVLTDVHAASPGLSVAS
+LRYFNPVGAHPSGRMGEDPQGTPANLMPFVSRVASGAYPELTVFGADFATRDGSAVRDFI
+HVMDLAEAHVAALEWMAARPSE--EAGVRVWNIGRGEGVTVFEMVRAFEEVTGRPVPFTV
+GGRRAGDIAESCADVGAVARDVGWRARRDVREMVRDLWAWQQAEQEGDGG--P
+>SA211_MHAAABBN_01385
+--MRVLVTGGAGYLGSHTVLTLLEAGHDVLVLDSLVTATTTSLERVAELAGTRLGGSRLR
+LHVADIRRPEDYRGALADFGPAALVHFAGLKSPTESMTRPAAYYDVNVGGTAAVAEAALA
+AGVRTVLFSSSATVYGDRAPVPVAEDAATDPVSPYGHSKLMAEQVLRDVCATVDGGGLAM
+LRYFNPVGAHPSGRLGEDPSGVPANLMPFVARVASGAYPELRVFGADFDTRDGSAVRDFI
+HVMDLAEAHVAGLEWLAARVATGGGTTTRVWNIGRGEGVTVFEMVRAFEAVTGGRIPYRV
+VERRPGDIAESCAAVDAIGAEVGWHARRDVTAMVRDLWAWQEANPAGFSSRAE
+>TT9_LFPAFLNI_01610
+--MRVLVTGGAGYLGSHTVLTLLEAGHDVLVLDSLVTATTTSLERVAELAGTRLGGSRLR
+LHVADIRRPEDYRGALADFGPAALVHFAGLKSPTESMTRPAAYYDVNVGGTAAVAEAALA
+AGARTVLFSSSATVYGDRAPVPVAEDAATDPVSPYGHSKLMAEQVLRDVCATVDGGGLAM
+LRYFNPVGAHPSGRLGEDPSGVPANLMPFVARVASGVYPELRVFGADFDTRDGSAVRDFI
+HVMDLAEAHVAGLEWLAARVATGGGTTTRVWNIGRGEGVTVFEMVRAFEAVTGGRIPYRV
+VERRPGDIAESCAAVDAIGAEVGWHARRDVTAMVRDLWAWQEANPAGFSSRTE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000128.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000128.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f7a17132621d38aaf7957f56a1f58fe9c8e2ba79
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000128.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01259
+MTENAAQNAPLTGKTVAFLATNGVEQVELTSPWEAVIAAGATPVLVSPESGTITAMQSDW
+DHGESFEVNTTVKDAKAEDFDGIVLPGGTLNADAMRVNKDAQAFVRAFFEQHKPVAAICH
+APWTLIEAGVVEGRKMTSYSSLKTDLKNAGAQWVDEEVVVDAGLTTSRSPEDLDAFNAKL
+VEEL-AEGKHEDQTA
+>KBS0714_MOLHKGIG_01636
+MTENANQNAPLTGKTVAFLATNGVEQVELTSPWEAVIAAGATPVLVSSKSGTITAMKSDW
+EHGESFEVNTTVKDAKAEDFHGLVMPGGTLNADTLRIDKDVQAFVRAFFEQHKPVAAICH
+APWTLIEAGVVDGRRLTSYASLESDLKNAGAQWVDEEVVVDNGLTTSRTPDDLDAFNAKL
+VEEL-GEGKHEDQTA
+>KD337_NAFOICDF_01168
+MTENAVQNAPLTGKTVAFLATNGVEQVELTSPWEAVIAAGATPVLVSPESGTITAMQSDW
+DHGESFEVNTTVKDAKAEDFHGLVMPGGTLNADAMRVNKDAQAFVRAFFDQHKPVAAICH
+APWTLIEAGVVDGRRLTSYASLESDLKNAGAQWVDEEVVVDNGLTTSRSPEDLDAFNAKL
+VEEL-GEGKHEDQTA
+>KD337_NAFOICDF_01210
+MAVD------LQGKRVTILAADGVERVELDQPREALDRAGARTEVLSVDEGEIKARENDL
+DPAGTFGVDGLVAEASGADYDALVLPGGTVNPDKLRIDEDAVAFVRDFAENGKPVVAICH
+GPWTLIEADVATGRTLTSFPSIRTDLRNDGANVVDQEVVVDKNLITSRSPEDLPAFSEAI
+VAQLAGTTTKEEETS
+>SA211_MHAAABBN_01341
+MTENANQNAPLTGKTVAFLATNGVEQVELTSPWEAVIAAGATPVLVSPESGTITAMQSDW
+DHGESFDVNTTVKDAKAEDFDGLVMPGGTLNADAMRVNKDAQAFVRAFFEQHKPVAAICH
+APWTLIEAGVVEGRRLTSYPSLKTDLKNAGAQWVDEEVVVDNGLTTSRSPEDLDAFNAKL
+VEEL-GEGKHEDQTA
+>TT9_LFPAFLNI_01565
+MTENAVQNAPLSGKTVAFLATDGVEQVELTSPWEAVIAAGATPVLVSPKSGTITAMKSDW
+EHGESFEVNTTVKDAKAEDFHGLVMPGGTLNADALRIDTDAQAFVRAFFEQHKPVAAICH
+APWTLIEAGVVDGRRLTSYASLESDLKNAGAQWVDEEVVVDSGLTTSRTPDDLDAFNAKL
+VEEL-GEGKHEDQTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000131.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000131.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cb081bb9f167b5a75da971b4f5c11fcd842332e0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000131.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01310
+MVGQTVGYVRVSSAEQNLDRQLEA-----VGECDRIFRDKISGSSRAKRAGLAELLGYVR
+EGDLVKIASMDRLGRDTRDLYAIVDELTGKGCAVQFVSERITVDKSGTSPVDG---LMLG
+ILAAFAEFERRRIKERQAEGIALAKARGKYV-QAPKLSDTDVEQAKAMVDMGI-PKSEVA
+RTLGVSRQTLYTSLGRIASS--
+>KBS0714_MOLHKGIG_00620
+MVGQTVGYVRVSSAEQNLDRQLEA-----VGECDRIFQDKISGSSRAKRTGLAELMQYVR
+EGDLVKVASMDRLGRDTRDLYAIVDELTGKGCAVQFVSERITVDKSGTSPVDG---LMLG
+ILAAFAEFERRRIKERQAEGIALAKARGKYV-QAPKLSGTDVEQARVMIEMGI-PKAEVA
+RTFGVSRQTLYTSLRRFESG--
+>KD337_NAFOICDF_00689
+MVGQTVGYVRVSSVEQNLDRQLEA-----VGECDRIFEDKISGSSRAKRTGLAELMRYVR
+EGDLVKVASMDRLGRDTRDLYAIVDELTGKGCAVQFVSERITVDKSGTSPVDG---LMLG
+ILAGFAEFERRRIKERQAEGIALAKARGKYV-QAPKMSDLDVEQARVMISIGI-PKAEVA
+RTFGVSRQTLYASLRRVAP---
+>KD337_NAFOICDF_02211
+MVGQAVGYVRVSSAEQNLDRQLEA-----VGECDRVFEGKISGSSRAKRTGLAELMRYVR
+EGDLVKVASMDRLGRDTRDLYAIVDELTDKGCAVQFVSERITVDKSGTSPVDG---LMLG
+ILAAFAEFERRRIKERQAEGIALAKARGKYV-QAPKLSGTDVEQARVMINMGI-PKAEVA
+RTFGVSRQTLYTSLARMGL---
+>KD337_NAFOICDF_02215
+M---HVGYARVSTLEQDLSAQREALERLGVENKDIYFDHGLTGTTRA-RPGLREALAATR
+DGDTLVVTKLDRLARSLPDARDIADELTTKGVA-------LSLGGSVYDPNDAVGRLLFN
+VLGMVAEFEADLIRLRTREGMAIARSKGKLKGKKPKLSPSQRKHLLTLHAAGEHTQAELA
+ELFNVSRTTIYRELRRTTTDT-
+>SA211_MHAAABBN_00361
+MVGQTVAYVRVSSAEQNLDRQLEA-----VGECDRIFEDKISGSSRAKRAGLAELIGYVR
+EGDLVKVASMDRLGRDTRDLYAIVDELTDKGCAVQFVSERITVDKSGTSPVDG---LMLG
+ILAAFAEFERRRIKERQAEGIALAKARGKYV-QAPKLSGADVEQARVMIDMGI-PKAEVA
+RTFGVSRQTLYTSLSRGAGAEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000132.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000132.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ebd89b684149bd67ce7d2198680b44bd395253df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000132.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_01337
+MSTDRDAGAEIRLESLTKRYPGQDRPAVDALDLLIPAGETVVFVGPSGCGKTTSLKMINR
+LIEPTSGRILIGGEDITRRDPTRLRRQIGYVVQGGGMMPHLSVAENVGLVPRLLKWDRRR
+IADRVDELLDLVGLDPAVYRDRFPRELSGGQQQRVGVARGLAADPPVLLMDEPFGAVDPL
+TRQRLQQEMLDIQARVGKTIVMVTHDVDEAVLLGDRILVLEPGAHVAQYATPEEVLARPA
+TEFVADFVGSGAGLKRLGLRSVDSLPLRPIAHHPTGTLPDGPVLDAATPISEALAALVTA
+PTEEIAVVRDGTVIGLLDYPTLRAHARAGDEQARP
+>KBS0714_MOLHKGIG_01585
+MSTDRDAGAEIRLESLTKLYPGQDRPAVDALDLIIPAGETVVFVGPSGCGKTTSLKMINR
+LIEPTSGRILIGGEDITRRDPTRLRRQIGYVVQGGGMMPHLSVAENVGLVPRLLKWDRRR
+IADRVDELLDLVGLDPAIYRDRFPRELSGGQQQRVGVARGLAADPPVLLMDEPFGAVDPL
+TRQRLQKEMLDIQARVGKTIVMVTHDVDEAVLLGDRILVLEPGAHVAQYATPEEVLARPA
+TEFVADFVGSGAGLKRLGLRSVDSLPLRPIAQHPTGTLPGEPVLDAATPISEALAALVMA
+PTEEIAVVRDGTVIGLLDYPTLRAHARASDEQARP
+>KBS0714_MOLHKGIG_02251
+M---------IRFEHVEKTFPDGTR-AVEDFSLEVPSHTTTVLLGSSGCGKTTLLQMVNR
+MVDPTGGRVLIEGRDVASLDPVKLRRGIGYVMQNAGLLPHRTVLDNVLTVPRLTGRISRQ
+DRDHAHELLELVGL-PAAVASRYPSQLSGGQRQRVGAARALAPDPDVLLMDEPFSAVDPV
+VRADLQAEMLRIQRELSKTVLFVTHDVDEAVLLGDEVLVLREGARVAQHGTGEDILLRPA
+DDFVRSFVG---GARR-----------ELHVEDRTGT---PIVVDAS-------------
+----------GRVAGTLVQP---------------
+>KD337_NAFOICDF_00456
+M---------IRFEHVGKVFDDGTA-AVEDFSLEVPSHTTTVLLGSSGCGKTTLLQMVNR
+MVDPTSGRVWIDDADVASVDPVRLRRRIGYVMQQAGLLPHRTVLDNVLTVPRLTGRVSAA
+DRSRAHELLELVGL-PADAARRRPDQLSGGQRQRVGVARALASDPDILLMDEPFSAVDPV
+VRAELQAELLRIQRELAKTVLFVTHDVDEAVLLGDEVLVLRTGAQVAQRGRGEEILLHPA
+DGFVDRFVG---GDRR-----------RLHVEERAGT---ATVVDAA-------------
+----------GRVAGLLETP---------------
+>SA211_MHAAABBN_01296
+MSTDRDAGAEIRLESLTKLYPGQDRPAVDALDLIIPAGETVVFVGPSGCGKTTSLKMINR
+LIEPTSGRILIGGEDITRRDPTRLRRQIGYVVQGGGMMPHLSVAENVGLVPRLLKWDRRR
+IADRVDELLDLVGLDPAIYRDRFPRELSGGQQQRVGVARGLAADPPVLLMDEPFGAVDTL
+TRQRLQKEMLDIQARVGKTIVMVIHDVDEAVLLGDRILVLEPGAHVAQYATPEEVLARPA
+TEFVADFVGSGAGLKRLGLRSVDSLPLRPIAQHPTGTLPGGPVLDAATPISEALAALVMA
+PAEEIAVVRDGTVIGLLDYPTLRAHARAGDEQARP
+>TT9_LFPAFLNI_01512
+MSTDRDAGAEIRLESLTKLYPGQDRPAVDALDLIIPAGETVVFVGPSGCGKTTSLKMINR
+LIEPTSGRILIGGEDITRRDPTRLRRQIGYVVQGGGMMPHLSVAENVGLVPRLLKWDRRR
+IADRVDELLDLVGLDPAIYRDRFPRELFGGQQQRVGVARGLAADPPVLLMDEPFGAVDPL
+TRQRLQKEMLDIQARVGKTIVMVTHDVDEAVLLGDRILVLEPGAHVAQYATPEEVLARPA
+TEFVADFVGSGAGLKRLGLRSVDSLPLRPIAQHPTGTLPGGPVLDAATPISEALAVLVTA
+PAEEIAVVRDGTVIGLLDYPTLRAHARAGDEQARP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000133.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000133.fa
new file mode 100644
index 0000000000000000000000000000000000000000..081875d917e7ab6404d0a109f477a2beeac8ba9b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000133.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_01338
+MIARLRAASAEDRLLLIGLPLLVAALLIGWTVWVRGAALDDVEARLLTWPTVLRLTAEHL
+ALVGVSTVLVVATAVPLGVLLSRPAARRFTPVAMGLANAGQAAPVIGVIVLLAMAWGFGF
+RVA----VLALSLYAFLPVLANTLAGLRGVDPTVVEAARGMGMSPLQTLLRVELPLALPV
+IMAGLRTALVLLVGTGAFATFIDAGGLGLLIQTGIVLFRFPLLVSGAILVAALALMIEWI
+GRLVETLATPRGL---A
+>KBS0714_MOLHKGIG_01584
+MIARLRAASAEDRLLLIGLPLLVAALLIGWTVWVRGAALDDVEARLLTWPTVLRLTAEHL
+ALVGVSTVLVVATAVPLGVLLSRPAARRFTPVAMGLANAGQAAPVIGVIVLLAMAWGFGF
+RVA----VLALSLYAFLPVLANTLAGLRGVDPTVVEAARGMGMSPLQTLLRVELPLALPV
+IMAGLRTALVLLVGTGAFATFIDAGGLGLLIQTGIVLFRFPLLVSGAILVAALALMIEWI
+GRLVETLATPRGL---A
+>KBS0714_MOLHKGIG_02249
+M---------------------ISSLFSWFADPAHWAGPNGVPARV----------LEHL
+GYSVLALVIAAAIAFPVGVWIGHTGRGRRVVVA--LSSALRALPTLGLLTFLAIVLDIRL
+RQALIPTVMVLVILAIPPLLAGTYAGLQAVPREVVHAARANGHSTGQLIGQVELPIALPM
+AVGGLRSATLQVIATTSVASYLGLGGLGRYLFDALAVQDYVTMLAGAVLIAVLALLCDGL
+LLLVQRILTPAGLRARG
+>KD337_NAFOICDF_00458
+M---------------------IADLFAWFADPAHWTGPGGVPARV----------AEHL
+GYSLLALAIAAVIALPAGVAIGHTGKGRRVVVA--VSSALRALPTLGLLTFLAIVLQVGL
+RQALIPAVIVLVVLAVPPLLAGAYAGVHAVPRDVVVAARANGHSTRQLVSQVEVPLALPM
+IVGGLRSASLQVLATTSVAAYLGLGGLGRYLFDALAVQDYTTMLAGAVLIALLALVSDAV
+LLLFQRLVTPA------
+>SA211_MHAAABBN_01295
+MIARLRAASAEDRLLLIGLPLLVATLLIGWTVWVRGAALDDVEARLLTWPTVLRLTAEHL
+ALVGVSTVLVVATAVPLGVLLSRPAARRFTPVAMGLANAGQAAPVIGVIVLLAMAWGFGF
+RVA----VLALSLYAFLPVLANTLAGLRGVDPTVVEAARGMGMSPLQTLLRVELPLALPV
+IMAGLRTALVLLVGTGAFATFIDAGGLGLLIQTGIVLFRFPLLVSGAILVAALALMIEWI
+GRLVETLATPRGL---A
+>TT9_LFPAFLNI_01511
+MIARLRAASAEDRLLLIGLPLLVAALLIGWTVWVRGAALDDVEARLLTWPTVLRLTAEHL
+ALVGVSTVLVVATAVPLGVLLSRPAARRFTPVAMGLANAGQAAPVIGVIVLLAMAWGFGF
+RVA----VLALSLYAFLPVLANTLAGLRGVDPTVVEAARGMGMSPLQTLLRVELPLALPV
+IMAGLRTALVLLVGTGAFATFIDAGGLGLLIQTGIVLFRFPLLVSGAILVAALALMIEWI
+GRLVETLATPRGL---A
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000136.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000136.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0dd9b369ab3f1a554e7e959d8d7240f8b9cb709f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000136.fa
@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_01355
+MGGGETGIGSGARPRPHRTHQHRRVHDRLAHPVAGPAA-GPRFALPRGVEPGRAVVVGAGPNGLTAAALLAREGWEVDVY
+ERAPVPGGASASAPVLGEGTVVDLGAAGHPFGAASPVFRDLDLAAHGLQWLHPAVPMGHPLPDGPAAILHRDLDATAEGL
+GPDGRAWRAVHGALVEHIEELVADVLGPLVRPWPHPVAMARFGLRAPWPAAHFGRAVFRTEQARALYTGSAVHAIMPPGR
+PLTSAFGALFGALGMSSGWPVARGGSGVITDALVSVLRAHGGRLHLDQEVTDLRALPDVDAVVLDMTPRQVARLRGTDLS
+PSYAAALQRWCPGPAVSKVDFLLDGPVPWRDGRLAGAGTVHLGGTAADIQRAEADVAAGRMPARPFVMLCQQQSADPSRA
+AGPAAGRTVLWSYAHVPHGHPGDVRPLIEAEVERHAPGFRDRILGAVDMRPADLEAWNPNLVGGDIAGGSMAGLRLLLRP
+TASPRPHR------------AGR--PGLYLASASTPPGAGVHGMAGAWAVRTLLADRARATSR
+>AS2_ACLBLIBL_02577
+M---------------------------NAAPTQDTAEDHARFPLPRDAEPGRAVVVGAGPNGLTAAALLARAGWEVDVH
+ERHPSPGGACASAPLLGEGTVVDLGAAGHPFGVASPVFADLDLIGHGLRWAHPEVVMAHPLPDGEPGLLYRDLERTAAGL
+DADAARWWAVHAPLVEGAEQLVDNVLGPIVRPWPHPLTMTRFGLRAPWPASWLTGGLFRTEQARALFVGSAVHAVMAPSR
+PFTAAFGALFAALGMSSGWPVAEGGSQAIVDALVRVLRTHGGRLHLGSPVEDLRAFADVDAVLLDLTPTQVARLRGTDLP
+KHSLSRMRRWRHGSAAFKVDMLLDGPIPWADPRVGQAGTVHLGGTAAQVQRAEADVAAGRMPDEPFVMLCQQQSADPSRA
+VGPAAGRHVVWSYAHVPHRHSGDATHAVLARIERFAPGLRDRIVRIVATSPAELEAWNPNLVGGDIAGGAMDGLQLLARP
+RISAAPHRLRAAAPSAWRTSSGRTAPGLYLASASTSPGAGVHGMAGAWAVRTLLSDRRCAR--
+>KBS0714_MOLHKGIG_01569
+M--------------------------------TEIAA-GPGFALPRGVEPGRAVVVGAGPNGLTAAALLAREGWEVDVF
+ERAPVPGGACASAPVLGEGTVVDLGAAGHPFGVASPVFRELGLTDHGLAWLHPAMPMGHPLPDGPAALLHRDLEATAAGL
+GVDARAWRAVHGALVAHVDEILAGALGPVLRPPPHPVAMARFGLRAPWPADLLGRAMFRTEAARALFTGSAAHAILPSSR
+PLTAAFGALFGALGMSSGWPVARGGSGAIVDALVAVLRAHGGRLHLGHEVTDLRALPAADAVVLDLTPRQVLRVAGTGLP
+PRYAAALRRWRPGPSVSKVDFLLDGPIPWRDARLAGAGTVHLGGTAAEIRRAEDDVAAGRMPTRPFVMLCQQQAADPSRA
+TGPARGHTVVWSYAHVPHGHPGDVRPLIEAEVERHAPGFRDRIGAAVAMRPADLEAWNPNLVGGDIAGGSLAGARALLRP
+TASPRPHR------------AGR--TGLYLASASTPPGAGVHGMGGAWAVRTLLADRRR----
+>KD337_NAFOICDF_01248
+M-------------------------PRDAAPIDAPAARDRGFALPQGAEPGRAVVVGAGPNGLTAAALLAREGWEVDVY
+ERHHAPGGASASAPLLGRGTVVDLGAAGHPFGVVSPVFRELDLTGHGLRWVHPEFPMGHPLPDGPAAVLHRDLDATAEGL
+GVDGRAWRALHAPLVRDADRLAADVLGPLLRPWPHPVSMARLGLRAPWPAGWVNRAVFRTEQARALYTGAAAHAILPPGR
+PLTSAFGALFGALGMSSGWPVAAGGSQSIVDALLAVLRAHGGRLHLDHEVTDLRELPAADAVVLDLTPRQVAALAGTDLP
+PAYARSLRRWRHGSAVSKVDFLLDGPVPWTDVRLAGAGTVHLGGNAAQLQHAEAEAVAGRMPEHPFVMLCQQQAADPSRA
+VGPSAGRTVVWSYAHVPFGWDGDVRPLVEEQVERFAPGFRDRIVHAVATRPADLEAWNPNLVGGDIAGGSMGGLQLLLRP
+TASPRPHR------------AGR--PGLYLASAATPPGGGVHGMAGAWAVRTLLRDRARAAF-
+>SA211_MHAAABBN_01279
+M--------------------------------TDTAA-GPGFALPRGVEPGRAVVVGAGPNGLTAAALLAREGWEVDVF
+ERAPVPGGACASAPVLGEGTVVDLGAAGHPFGVASPVFRELGLTDHGLAWLHPAMPMGHPLPDGPAALLHRDLEATAAGL
+GVDARAWRAVHGALVAHVDEILAGALGPVLRPPPHPVAMARFGLRAPWPADLLGRAMFRTEAARALFTGSAAHAILPSSR
+PLTAAFGALFGALGMSSGWPVARGGSGAIVDALVAVLRAHGGRLHLGHEVTDLRALPAADAVVLDLTPRQVLRVAGTGLP
+PRYAAALRRWRPGPSVSKVDFLLDGPIPWRDARLAGAGTVHLGGTAAEIRRAEDDVAAGRMPTRPFVMLCQQQAADPSRA
+TGPARGHTVVWSYAHVPHGHPGDVRPLIEAEVERHAPGFRDRIGAAVAMRPADLEAWNPNLVGGDIAGGSLAGARALLRP
+TASPRPHR------------AGR--TGLYLASASTPPGAGVHGMGGAWAVRTLLADRRR----
+>TT9_LFPAFLNI_01496
+M--------------------------------TEIAA-GPGFALPRGVEPGRAVVVGAGPNGLTAAALLAREGWEVDVF
+ERAPVPGGACASAPVLGEGTVVDLGAAGHPFGVASPVFRELGLTDHGLAWLHPAVPMGHPLPDGPAALLHRDLEATAAGL
+GVDARAWRAVHGALVAHVDEILAGALGPVLRPPPHPVAMARFGLRAPWPADLLGRAMFRTEAARALFTGSAAHAILPSSR
+PLTAAFGALFGALGMSSGWPVARGGSGAIVDALVAVLRALGGRLHLGHEVTDLRALPAADAVVLDLTPRQVLRVAGTGLP
+PRYAAALRRWRPGPSVSKVDFLLDGPIPWRDARLAGAGTVHLGGTAAEIRRAEDDVAAGRMPARPFVMLCQQQAADPSRA
+TGPAQGHTVVWSYAHVPHGHPGDVRPLIEAEVERHAPGFRDRIEAAVAMRPADLEAWNPNLVGGDIAGGSLAGARALLRP
+TASIRPHR------------AGR--AGLYLASASTPPGAGVHGMGGAWAVRTLLADRRR----
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000137.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000137.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cca8936c92771aff2af140a06dfd8394f791e522
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000137.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01363
+-------------MVGGALLGVVAGALGTAVH---------LTLSPLPG---GWTLPWGA
+VLALVLAGSVQRWWMRRTAERGGAPLPAGAAVVAGAFTAVLALHRLPVHDALGVS--WTA
+-------GLWAAAPGAVVASVAWNVGQ---PVL-GLVLLAAGRRLDRRPAEAADGATRPR
+RTSVTARETRPGERVPWTAAPQPRAQREVDGQP--
+>AS2_ACLBLIBL_02268
+-------------MSRRVLLLLTAAVLVYALQFLPPLIFHDLVIAPSLGEHFGWALPY--
+-LAPVMVVPPLAW-----AAVAAAPVLRGGSTRRASGLSMTLLFFAPFAYAFATPVTWVA
+VRGVDAIGGLEDDPLLLGMVLPFLSGMILSPVLVGVVLQWWLRRTARR------------
+-----AAAGGAQAEAAPERPAPEAPTHDASGLPLP
+>KBS0714_MOLHKGIG_01563
+-------------MVGGTLLGVVAGALGTAVH---------LNLASLPG---GWTLPWGA
+VLALVLVGSTQRWWMVRRADRGGRALPAGAAVVAGAFTAVLALQRLPVDDALGVS--WTA
+-------GLWAAAPGAVVASVAWNVGQ---PAL-GLVLLAVGRRLDRRPAGAADGATRPR
+RATVTARETRPGERVPWTAAPQPRAQREVDGQP--
+>KD337_NAFOICDF_01254
+-------------MLPGLALGVGTGALGTATH---------LSLLPV-G---SWLLPWGL
+VLALVLVGSTQRWWMRRAAAAGGRPVRAGAAVVLAAFTMASALRWLPATDRLDLP--WTA
+-------GVAQAMPVAFAASVGWTLGL---PVL-GVVLLWLGAR----------------
+-----AGEGRAAGESTLERTPNPVPARKVDGQP--
+>SA211_MHAAABBN_01273
+MPERPRRRARPADVVGGALLGVVAGALGTAVH---------LNLASLPG---GWTLPWGA
+VLALVLVGSTQRWWMVRRAGRGGRALPAGAAVVAGAFTVVLALQRLPVDDALGLS--WTA
+-------GLWAAAPGAVVASVAWNVGQ---PAL-GMVLLAAGRRLDRRPAEAAEAATRPR
+RATVTARETRPGERVPWTAAPQPRAQREVDGQP--
+>TT9_LFPAFLNI_01490
+-------------MVGGTLLGVVAGALGTAVH---------LNLASLPG---GWTLPWGA
+VLALVLVGSTQRWWMVRRAGRGGRALPAGAAVVAGAFTAVLALQRLPVDDALGLS--WTA
+-------GLWAAAPGAVVASVAWNVGQ---PVL-GMVLLAAGRRLDRRPAEAAEAATRPR
+RATVTARETRPGERVPWTAAPQPRAQREVDGQP--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000139.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000139.fa
new file mode 100644
index 0000000000000000000000000000000000000000..104354d8fd1e47dad32f630426d09cdad7c567eb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000139.fa
@@ -0,0 +1,96 @@
+>AS2_ACLBLIBL_01386
+MNR------------------------------------------------------AHGASG----PSR-------PP-
+------------CRRPNRNASR-----------HDPELRAHPRPGRRRPPQVA---------------------------
+--------------------DIAEEI-VTEEAVETAPEQ--------------------TFADF----------------
+--------------GVHPAIVQALEAKG-------------------------------------------------IVH
+PF----------------PIQAMTLPVAL-----GGHDII----------------------------------------
+-------------------------------------------GQA-----------KTGTGKTLGF-------------
+-------------------------------------GIP----------ALQRAI-----------------GPGEPGW
+DKLEA-QGSAGAPQALIVAPTRELAVQVAGDLTAAAAQRPLRIATIYGGRAYEPQIEELQRGVE------VVVGTPGRLI
+DLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLGAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEG
+LTKKDIRQLVYRAHHMDKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAR----------
+---------------EQALRAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV
+D-WEDMPRWSLI-------DKALGLGQPEPQETYSSSPHLFADLGIPKGTKGRLPKEKRVLEGLE-GEVLEDLGGPESAP
+-------------R-GRGGR-SRDGERDGG------------RGGR-GGRGER---------GGRGGRSRDDERGGR-EG
+GR----------GGRGERA-GREGGRGRDAEQSSARGEEAGESKGRGRGGERAGREGGRGESTGRGRG--GRSGESRTRG
+ESRTEASEARAAQPVAGVERTEARMAERAEARAEARRRRGGRTRTRRRNGEVV-----------DG
+>KBS0714_MOLHKGIG_01539
+M-------------------------------------------------------------------------------
+----------------TQNSE-------------------HTPASADLDPTVA---------------------------
+--------------------AIAEDI-VTEDAAPVAPEQ--------------------TFADF----------------
+--------------GVHPAIVEALEAKG-------------------------------------------------IVH
+PF----------------PIQAMTLPVAL-----GGHDII----------------------------------------
+-------------------------------------------GQA-----------KTGTGKTLGF-------------
+-------------------------------------GIP----------ALQRAI-----------------GPGEPGW
+DGLEA-KGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQRGVE------IVVGTPGRLI
+DLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEG
+LTKKDIRQLVYRAHHMDKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAR----------
+---------------EQALRAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV
+D-WEDMPRWSLI-------DKALGLGQPEPVETYSSSPHLFSDLGIPKGTKGRLPQAKRVLEGLE-GETLEDLGGPEAKQ
+-------------R-------------DGG------------RG--------R---------GREGGRSRDGERGGR-EG
+GR----------GGRGGRGRGGRSGEGRDAARGGSRGER-SERSGRGRGEAPAEQ---RAEGRGRGR------GEGRKRT
+ASRSETPAARTSEPVAGVELTEARRAERAEARAEARRRRGGRSRTRRRNGEVV-----------DG
+>KD337_NAFOICDF_00286
+MKSIDNVNVKLGDDLKAEITAGSKVRIAASAFSIYAFEALREELEGLEELQFIFTDPAFSASSIDGTPRREHRRYFIPPL
+DIESSLTGTEFEVRLRNRLTQRAIARECADWVRRKVRFR-SNTSGKGMQPIIGVGDDAAYLPVQDFSTSALGYEAGGALS
+NVVGKFEGPLEAAGLLTVFDQVWNDPSALEDVTSTVLERIEQVYAENSPRHIYFLILNSIFSDFLADLSEDALPNDRTGY
+RETKVWRALYDFQRDAAESIIQKLETYNGCILADSVGLGKTFTALAVIQYYEKRNKSVLVLCPKKLAENWTTYNNNYVTN
+PFVEDRFNYDVLAHTDLSRTRGESLGVRLDRINWGNYDLVVIDESHNFRNATYGEDRDTRYQRLMEKVIREGVRTKVLML
+SATPVNNRFNDLKNQLQLAYEGEEENLSQHLNLSTTIDGVFRGAQAAFNEWSKLPAEERTPGRILGMLDFDFFELLDAVT
+IARSRKQIQRFYDTAAIGAFPTRLPPLSLQEPLSEDKSVPSYNDIFEQLQALNLAVYTPLAFVHASRRYKYETGPGEENT
+DNFRSGRGQAGRETGL----KRLMTVNLLKRLESSVHAFRKTLVSI------ESQVDALHRRLESEALGPLRVDAPAVEE
+DILREDD---DVAEALFALPGDLELDLNDV-DVLSWTSALWHDRETL--------------RELIGEMDKI---TPERD-
+LKLQRLRRLI-----RDK----ATSPLNEGNRKVLVFSAFADTADYLYEQLSPALSAAGLETGIITGGSHSARSTLDGAV
+DFQTLMTLFSPVSKNRSALMPEETREVDVLIGTDVISEGQNLQDCDFLVNYDIHWNPVRIVQRFGRIDRIGSTNERIQLV
+NFWPDMDLDAYIQLKDRVENRMVMVDVTGTADDNVLTPQQEQDAAYRTAQLKRMREEVVELEDTQAGVSITDLGLNEFRS
+ALMAYVREHGDLTRAPRGLHAVVPADPDAGLPAGVIFALHNLQADPAMHRGNRLHPYYLVYVGEDGATVLEHTKAKP---
+--------------------------LLDLLRSA------------------AEKQ--SVPLADAVRAFNTATAEGTDMA
+AYSALLTRAIESMVEADEEQDVASLFTAGPTTALTSAIRG------LEDFELIAFLAVVDTAGTDA
+>KD337_NAFOICDF_01277
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------------------TENTAAAEAVAPTAPEQ--------------------TFADF----------------
+--------------GVQEPIVRALSEKG-------------------------------------------------IVH
+PF----------------PIQAMTLPVAL-----GGHDII----------------------------------------
+-------------------------------------------GQA-----------KTGTGKTLGF-------------
+-------------------------------------GIP----------ALQRAV-----------------GPDEAGW
+DTRVA-AGAAGAPQALVVAPTRELAVQVAGDLVAAAKHRPLRIATIYGGRAYEPQIEELQRGVE------VVVGTPGRLI
+DLLRQKHLRLDAVNTVVLDEADEMLDLGFLPDVETLLAAVPEVRQTMLFSATMPGPVIAMARRYMTRPTHIRASDPEDEG
+LTKKDIRQLVYRAHHMDKDELVARALQAEGRGRTIIFTRTKRTAARVAEELTNRGFAAGPLHGDLGQGAR----------
+---------------EQALRAFRNGKVDILVATDVAARGIDVDDVTHVINFQAPEDAKTYVHRVGRTGRAGHKGTAVTLV
+D-WEDMPRWSLI-------DKALGLNQPEPVETYSSSPHLFSDLGIPKGTKGRLPKEKRVLAGLD-AERLEDLGGPEAKE
+-------------KAARGGRDERSGSRSGG------------RGERSGGRGGR---------AGGGSRASREDRPPR---
+----------------------------------------EDRTPRGERAPRPEK---TVKAERAPR------AE-RAPR
+AEKADRPAA----------------AERSEGASGERRR---RTRTRRRGGDVI-----------DG
+>SA211_MHAAABBN_01249
+M-------------------------------------------------------------------------------
+----------------TQNSE-------------------HTPAPADVDPTVA---------------------------
+--------------------EIAEDI-VTEDAAPVAPEQ--------------------TFADF----------------
+--------------GVHPKIVEALEAKG-------------------------------------------------IVH
+PF----------------PIQAMTLPVAL-----GGHDII----------------------------------------
+-------------------------------------------GQA-----------KTGTGKTLGF-------------
+-------------------------------------GIP----------ALQRAI-----------------GPGEPGW
+DGLEA-KGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQRGVE------IVVGTPGRLI
+DLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTMLFSATMPGTVVAMARRYMTQPTHIRAADPEDEG
+LTKKDIRQLVYRAHHMDKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAR----------
+---------------EQALRAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV
+D-WEDMPRWSLI-------DKALGLGQPEPVETYSSSPHLFSDLDIPKGTKGRLPQAKRVLEGLE-GETLEDLGGPEAKQ
+-------------R-------------DGG------------RG--------R---------GREGGRSRDGERGGRGRG
+GRSGEGRDRARGGGRGERTE--RSPRGRDEARA----------EGRGRGEAPAEQ---RAEGRGRGR------GEGRERT
+ASRPETPAARTPEPVAGVELTEARRAERAEARAEARRRRGGRTRTRRSNGEVV-----------DG
+>TT9_LFPAFLNI_01466
+M-------------------------------------------------------------------------------
+----------------TQNSE-------------------HTPASADLDPTVA---------------------------
+--------------------AIAEDI-VTEDAAPVAPEQ--------------------TFADF----------------
+--------------GVHPAIVEALEAKG-------------------------------------------------IVH
+PF----------------PIQAMTLPVAL-----GGHDII----------------------------------------
+-------------------------------------------GQA-----------KTGTGKTLGF-------------
+-------------------------------------GIP----------ALQRAI-----------------GPGEPGW
+DGLEA-KGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQRGVE------IVVGTPGRLI
+DLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEG
+LTKKDIRQLVYRAHHMDKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAR----------
+---------------EQALRAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV
+D-WEDMPRWSLI-------DKALGLGQPEPVETYSSSPHLFSDLGIPKGTKGRLPQAKRVLEGLE-GETLEDLGGPEAKQ
+-------------R-------------DGG------------RG--------R---------GRDGGRSRDGERGGRGRG
+GRSGEGRDRARGGGRGERNRGGRSGEGRDDARGGGRG----ERSGRGRGEAPAEQ---RAEGRGRGR------GEGRERT
+ASRSETPAARTSEPVAGVELTEARRAERAEARAEARRRRGGRSRTRRRNGEVV-----------DG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000142.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000142.fa
new file mode 100644
index 0000000000000000000000000000000000000000..34684bb29d5512892f7919b5424990c0ed650010
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000142.fa
@@ -0,0 +1,72 @@
+>AS2_ACLBLIBL_01501
+M---TDEIYETPSTTPNFQTELAAQLADL------IPEAIADGK---------VDVEKLK-ELLDGD-AADSNERFGL--
+--FWP---------GKKRAL-------------------RAAQEPTTATL---------------KPDFEDSKDWDTTQN
+VFIEGDNLEVLKIL------QKHYHAKIKLIYIDPPYNTG-KDFVYPDNYKEGLDTYLEWTRQVNEEGKKVTTNAETEGR
+YHSNWLNMMYPRLKLARNLLTDDGVIF-ISIDDNEIDNLLRLAKEVFGEP--NVSTTFIRQKKKKPSFLHANVGSMTEYL
+VCITRNKAFTF--PFSVDTTTAGKK--------------------------YPINNAGNSLGKLTFPAG-AVRFSQKFAE
+YEP--QDMSEGNIVTRLLDHVVVSEGVNR----NAFTLEGEWRYSQVTLDEFITAGDLITISKA-PFRP-------NHVK
+A--------------GGEIKKM--------HNLLTPSTY----GVGTNEDGTAELEDLM-EGSYFDNPKPTSLVRVLAQA
+VTYDDPSAIVLDFFAGSGTTADAVFRLNAQDGGNRRVISVQLPE-PLDERSEAWA-----AGYRT----------ISQLA
+KERIRRAGVRVLDREALLLEGRGVPLDTGFRAYKL-SDTNFSK-----WRLSSD-VEEDALQQHLLSLRDSATDDANA--
+---DELLTEI---LLKQGYSLTEAVSPAEVAG-----LDVRFVRDRDG-----DVAVLAYLNEHVKPTLEQLRALVDEEP
+---------------------------------TRIIVLEDAFQGDDELKTNLAQLAK--SKGIELWTA-----------
+>KD337_NAFOICDF_00288
+M---EMSMDKLRGTSPDLTQDNVARLAEL------FPTVVTEARDEDGQVTRAVDFDLLRQELSDHV-VEGPQERYHL--
+--DWP---------GKRAAA-------------------FAANAPTTATL---------------RPDREESVDFDTTKN
+VFIEGDNLEVLKVL------QESYLGKVKMIYIDPPYNTG-NDFVYADDFAESTADYLQRSGEIDDDGARLRANPETNGR
+FHSDWLSMMYPRLKLARNLLTEDGAIL-ASIGEREVSNLRAILNELFGET--NFVGELVWEKKKKGAFLSSHVTNVKEYI
+LVFCRDRSSFG--GLIGEVTHAAET--------------------------YPVIKSTNSRGIRTIPAGIASNYSERDHE
+VGA-GTRLTSGNMEMILLSDLIIRDGRLA----HDVEVESNWIYSQTLIDQFSLSGDLY-ITRD-LYIR-------RHVR
+EPRTKMLKD-LLMMRGESTSGS--------TFTLEPSLH--SDGWGTNEDAFGELHSILGEQNLMDFPKPSKLIAKLIRS
+VTWADSDAIILDFFAGSGTTGQAVTQLNAADGGRRQYLLVQLNE-AAEESSALRR-----AGFSS----------ISALS
+RERLRRSAAAV--RETSGTE----RLDLGFRAFRL-DASPFVE-----RNHSADSITPDMLAE----LENPVLADRSP--
+---EDLLTHV---LLAWGLDLSATIETVSLAG-----EEVYDVEDG---------ALLAALGSTVSDELAH--AMAERHP
+---------------------------------DRALFLDSGFV-SDAARINVEQIFREVSPGTDVKVL-----------
+>KD337_NAFOICDF_00347
+MSSLSDLLGQVRATNPDLAANLEREIKNRTRRQRQFGLVFEEHRPE------AVELPSREVRKGDKVRILPPRGETKKGD
+QTLWRVQRINRADD--IAHLVEVD--------GEQG------AEAALADLVVVAEFRDHMYPGLVETGRVERGG-DKPFH
+TVINAENFHALEML------TYTHRHQVHCIYIDPPYNTGAKDWKYNNDYVASDDDY-----------------------
+RHSKWLSFMERRLQVARELLNPEDSVLIVTIDEKEYLRLGMLLEQTFPQARMQMVSTVINPK---GSHRAGGFARSDEYV
+FFLFVGASQPAPMPLSSEWKVVQDSRALGLRWADLLRTADGSTRAARPNMFYPVFIRLAGDGPVFVSVGEPF-YDADLTA
+VEA--------------------PEDAVAIWPIKADGSQGRWQIGADTLRDLITKGYVR-IGR---WR--GSKTTLTYLK
+AGEQAKVEDGRFPVRGRRADGSVLVDASEYSASFVPTSQWRISSHNAEQGGTNLLKSIM-GDKRFPFPKSLYAVEDALRF
+LIKKNPDAVVLDFFSGSGTTAHAVMRLNKQDGGRRQCISVTNNEVSAEEQKGLRK-----QGLRPGDPEWEQWGICDYVT
+KP-----------RVTAAITGRTPTGDPIKGDYKFTDEFPMSDGFE--ENAAFFTLTYESPLM---VRQDLAFKRIAPLL
+WMRAGSRGRVITEVHARGWDVAEAYGVLTKVDRATPFAEAV-AEAGVGTVYVVTDDERRY------------QAVCALLP
+-------------------------------EDVTPVRLYESYL-------TNFEINTGGRAGA----------------
+>KD337_NAFOICDF_00694
+MSRLTDLLAQARKTDPQLAADLEAEFRQLTQRS-QFGLVFERHQPE------AVELPGRPVRRGDTVRVLPPRGTLTIGD
+TRHWVVTDLERTPDGKQAHLTEAD--------VDPEVREPATSTAALEDLVVVARFEDPIYPGLVETGRVENGGPDKPFH
+TVINAENFHALEML------TYTHRHKVDCIYIDPPYNTGAKDWKYNNDYVEADDDY-----------------------
+RHSKWLSFMERRLQVARELLNPDDSVLIATIDEKEYLRLGMLLEQTFPEARIQMISAIINPK---GSSRRDQFSRFDEYI
+FFVMNGSARPA--AVAGDMTMRQARSKEKVRWAGLMRQGANGRRSARPNLFYPIFV--ANETGRVHSVGDSLPLDVPRSE
+VSP--------------------PPGTTAIWPLSKAGGESTWGRDPESLRKALSAGYVK-IGR---FTPGSERCGFTHLQ
+SGQIKAIEEGALVVTGRDSDGSLQVEFAEGGQTAMPGTAWHRPAHSASEHGSTLLNAIL-PDRKFPFPKSLYAVEDAVRF
+FVHGKPDAVVLDFFSGSGTTAHAVMRLNRQDGGRRQCISVTNNEVSAEEQKGLRK-----KGLRPGDPEWERWGICDYIT
+KP-----------RITAAITGKTPAGDPIKGNYKFTDEFPMADGFE--ENAAFFTLTYEAPRQ---VRRNRAFARVAPML
+WFKAGSRGRIISSLPERGWDVAQAYGVLEDMDHAPEFLAALEADPQVGMAFIVTDSEVAF------------QSVARQLP
+-------------------------------EHATAVRLYESYL-------HNFQINRRA--------------------
+>SA211_MHAAABBN_02019
+M-------------------------------------------------------------------KRSPKGRLEL--
+--TWM---------GKDSALIPVEDGKYDYSFVDPN-DPRALEVKSIEVL---------------EQVGEVEGPTGANEN
+LLIIGDSGDALRSLGTIPEYAEKYGGKVKLVYIDPPFNTE-QAFDHYADQLE----------------------------
+-HSIWLTMMRDRIRDFKPLLHPDASIW-VHLDDSEVHRMRALMDEEFGAE--NFIATVVWQKKYSRDNRPA-IGTVHDYI
+LVYAPAGAQRW--------KTLRNR--------------------------IPRISAAQYRNPNNDPNG----------P
+WRPVPMDVQGGHATASQFYDVITPSGKIV----RPANGRA-WSVTAPVMQAMRDRGEVY-FGLDGSGKP-------NTIR
+Y-----LKD---------------------DEGLVPWTWWPHEEVGNNDDAKKEIIALFGEDQVFDTPKPERLLERVIRI
+AT--NADDLVLDCFAGSGTSAAVAHKLG------RRWLTVELSQ-EVADTFTVPRLRKVQRGTDS----------I----
+-------GISV--REAEGFA----DADMDGRVKPD-DAKALLRAIKEVQKVGLKSLSPEAGAA----LVQELRERLKP--
+---VSARQSV---CQDGGF-------TVAKMG-----PSMYEVDDEHGMVFLSPEATNGAWSKAIAGQLKF--TLTPDDP
+VFCGVRKRQRLAVIDGVADETVVRTVVEHLGEKERAVIVAKGVL-PEA-----GDLLQRLSPGSRIKKAPEDMFPKGTVN
+>TT9_LFPAFLNI_00111
+MSSLSDLLGQVRATNPDLAANLEREIKNRTRRQRQFGLVFEGHRPE------AVELPSRPVRKGDKVRILPPRGETKKGD
+QTLWHVDHIDRTTG--TARLTAVD--------GEQE------AQAAISDLVVVAEFRDHMYPGLVETGRVENGG-GKPFH
+TVINAENFHALEML------TYTHHRKVDS--------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------------------------------------------------------C----
+--------------------------------------------------------------------------------
+--RASDLGHV----------------------------------------------------------------------
+--------------------------------------------------------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000147.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000147.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9b86fe6a76f8a85a674f2e2dd03d68841d463a05
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000147.fa
@@ -0,0 +1,96 @@
+>AS2_ACLBLIBL_01615
+MSA-----------------------------------EPSPL-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------SGLAADPEERRLEAA-----
+----------------LRP-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------KHLDEFVGQRRVREQLDLML
+ASARLRD----------RAADHVLLSGPPGLGKTTLAMIVAAEMNAPLRLSSGPAI---------QHAGDLAAILSSLTE
+---GEVLFLDEIHRMS--------RPAEEMLYMAMEDFRVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRF
+GFTGHLDFYAEAELERVLRRSALLLDVRLASDGYRQI---ATRSRGTPRIANRLLRRVRDWALVKGVEQVEADHAAAALD
+MYDVDARGLDRLDRSVLTALCTTFGGGPVGLTTLATAVGEEA--ETVETVAEPFLIREGMVARTPRGRIALPGAWDHLGL
+A-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------SPEAGSGA-------------------------------------------------
+>KBS0714_MOLHKGIG_01272
+MSA-----------------------------------ESSPL-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------SAAAVDPEERRLEAA-----
+----------------LRP-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------KHLDEFVGQMRVREQLDLML
+ASARLRD----------RAADHVLLSGPPGLGKTTLAMIVAAEMNAPLRLSSGPAI---------QHAGDLAAILSSLTE
+---GEVLFLDEIHRMS--------RPAEEMLYMAMEDFRVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRF
+GFTGHLDFYTEVELERVLRRSALLLDMRLATEGYRQI---ARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALD
+MYEVDGRGLDRLDRSVLTALCTTFGGGPVGLSTLATAVGEEA--ETVETVAEPFLIREGMVARTPRGRVALPGAWEHLGL
+A-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------APEATPGP-------------------------------------------------
+>KD337_NAFOICDF_01510
+MS-------------------------------------ERPV-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------TAFEADAEERRLEAA-----
+----------------LRP-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------KHLDEFVGQARVREQLDLML
+ASARLRD----------RAADHVLLSGPPGLGKTTLAMIVAQEMNAPLRLSSGPAI---------QNAGDLAAILSSLTE
+---GEVLFLDEIHRMS--------RPAEEMLYMAMEDFRVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRF
+GFTGHLEFYAIEELERVLRRSSALLDMRVETDGYRQI---ASRSRGTPRIANRLLRRVRDWALVKGLDTVDAEAASAALT
+MYEVDARGLDRLDRSVLTALCTTFGGGPVGLTTLATAVGEEA--ETVETVAEPFLIREGMMARTPRGRVALPGAWDHLGM
+T-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------PPEAPLG--------------------------------------------------
+>SA211_MHAAABBN_00991
+MSA-----------------------------------ESSPL-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------SAAAVDPEERRLEAA-----
+----------------LRP-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------KHLDEFVGQMRVREQLDLML
+ASARLRD----------RAADHVLLSGPPGLGKTTLAMIVAAEMNAPLRLSSGPAI---------QHAGDLAAILSSLTE
+---GEVLFLDEIHRMS--------RPAEEMLYMAMEDFRVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRF
+GFTGHLDFYTEVELERVLRRSALLLDMRLATEGYRQI---ARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALD
+MYEVDGRGLDRLDRSVLTALCTTFGGGPVGLSTLATAVGEEA--ETVETVAEPFLIREGMVARTPRGRVALPGAWEHLGL
+A-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------APEATPGP-------------------------------------------------
+>TT9_LFPAFLNI_01230
+MSA-----------------------------------ESSPL-------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------SAAAVDPEERRLEAA-----
+----------------LRP-------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------KHLDEFVGQMRVREQLDLML
+ASARLRD----------RAADHVLLSGPPGLGKTTLAMIVAAEMNAPLRLSSGPAI---------QHAGDLAAILSSLTE
+---GEVLFLDEIHRMS--------RPAEEMLYMAMEDFRVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRF
+GFTGHLDFYTEVELERVLRRSALLLDMRLATEGYRQI---ARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALD
+MYEVDGRGLDRLDRSVLTALCTTFGGGPVGLSTLATAVGEEA--ETVETVAEPFLIREGMVARTPRGRVALPGAWEHLGL
+A-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------APEATPGP-------------------------------------------------
+>TT9_LFPAFLNI_01882
+MSILRVHDGLFGLTFQQALDKASPGATIALTPGTYAEFESIPVGNLRIIGAGSRPEDVILVTQLDVHGQISVENLTLQAP
+HFHNAVRLHGPTASAVFLYTAIQPEPTGQFPAVYSEGGAVTVRRSTLDQGPGGCALYVEGQGTATFEDSTTGTVNAVAST
+VTTVDSTHGAFHLSAASKVHARGTLCLAPAEGMRGLVLTAFSVLKAERLTTDITYLELSLEDSALDVAEVSTSSDVDVHV
+MTSGGSHVQIPPDTVRVTDIDRQKAEQEVAERRQREEAAARRRAEEAAAEAAATGEAARQAAAEAQAEARRQEEAKPRAV
+MWTAAQGADFTTVQDQLRPGDTLVLEEGDFHLPDPAIMLNCHIRGTGRADRIRLHGAVGIPNGATVRLENMLLVTPSTGN
+AVNVHAGGNATLTGVLVDPTKAEVFSPLCSSGGRLTLNEVRVVSEPTSYLADVLGTQGGVIVAEDSTFGIVRLESSARAT
+LTDCTANQLYVLGSGEALSLGTLRIPPTTPHLRALAVEEGGRGTIADLCVEEPCEVFVAGSLQIAHVSSAPHALHLITTD
+TALHSIPEDAIATAEEPSQTATADATLVEHPGENSTGDREPSAGRGHDGADLADTNCDPMAQLSALTGLADVKNQVQTFI
+AEVRFAEARRQRGFAVRRQTLHSQFLGNPGTGKTTVARLLGRALHQAGVLSSDVFVEVTREDLVSEHIGGTGPKTRRILE
+SALGGILFIDEAYTLAEGGPQDFGREAIATLLAFMENHRDEFMV----ILAGYPEQMHAFFKAN--------PG-LRSRV
+PLRFDFEDYSTAELVQMGLAALADDGFTVDPDAYRRTVAEAHRSSGD-RSNGRWVRNLND-RLVRHMAHRVMAESGAAED
+MVGVEDERLTQVDPADLHALLGRSTEDDTGVDHLLVELDEMVGLETVKAWVRGLVAQAEADERLRDAGVDLPRPTYHMVF
+AGSPGTGKTTVARLVGKLFHRLGILSTPQVVEASRERMVGRYIGHTEERTGLLLDEARGGVLFVDEAYQLDMPDSSNDFG
+KVAVETLITRLEDDRHSFIAIFAGYTDRMAQFLSLNPGLASRVPHNIEFPDYSPDDIAEIVVRTLRRTWSFDETVLRSAV
+AQGYAALPPESRANARQARNYADAISQAHKTWITESSTDGDDIRHIRDATIIGVLAAEPTGQDQ
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000148.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000148.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b8c9a642e302ba592a22e49e2c44aaa7c2c722ea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000148.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_01740
+M----AEPAATAEPDGREVRLARAEDLADPRLVPYTTLTDAALRRRVDAEHG------VF
+LAESSQVVRRALAAGHTPRSFLLGD--RYRGSFADVLAAHPDVPVFTGPDDVLEALTGFH
+LHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLT-PQ
+AADPLYRRAIRVSMGTVFRLPWARLEGPVAEAVPALREAGFAVAALEV-TERAVGLDSPE
+LEPLRSADRLALVLGQEGPGVRTETLEHTDADVVIPMPDGVDSLNVAAAAAVALWELRAR
+------
+>KBS0714_MOLHKGIG_01152
+M----------GEVGTREVRLERIEDLADPRLAPYTTMTDAALRRRVDAEHG------VF
+LAESSQVVRRALDAGHTPRSFLLGD--RYRGSFADVLAAHPDVPVFTGPDDVLEALTGFH
+LHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLT-PQ
+AADPLYRRAIRVSMGTVFRLPWARLPGPVAQSLPALRAAGFAVAALEV-TERAVGLDSAR
+IEPLRTAERLALVLGQEGPGVRPETLAQTDADVVIPMPAGVDSLNVAAAAAVALWELRAR
+------
+>KD337_NAFOICDF_00545
+MSSESPAQPASA-DQPAE---APAGVIVDPK--------DARLRKVRELLKGKNKASRAI
+IVDDEENLLAALAAGVELFTVFHGEDAELPAALAAVLPADQDVQVVS--THAAKELFGVE
+RRSRVFALARRPKPLTVAEVLEHPGDVLVLDGVKLMGNIGAITRSARALGAAGLVLVDAD
+LASVTDRRLIRASRGMVFSLPVALASA--DDVAAQLAEAGVPLVSLDLGSEKA--LDSVA
+EIP----GRVALLLGSEKHGPSARLAETAEHTVSITIHPEVESLNVSVSAALALYERRAS
+NPLPQA
+>KD337_NAFOICDF_01634
+M----PDDGAPA-PFPGEVRLQSAADLADPRLAPYTTLTDAALRRDVDAAHG------VF
+LAESSPVVRRALDAGHAPRSFLLGD--RYRETFADVIAAHPGVPVFTGPDEVLTALTGFH
+LHRGALAAMDRPAPRSVAEALDGAHRVLIAEDLVDHTNLGAVVRSAVALGWDALLLT-PR
+AADPLYRRAIRVSMGTVFRLPWARADGPLEEALPALRAAGFATAALEV-TDRAVGLDSPE
+LEPVRTAERLALVLGQEGPGVRPETLAAVDAHVVIPMPAGVDSLNVAAAAAVALWELRPR
+DT-PAA
+>SA211_MHAAABBN_00871
+M----------GEGGAREVRLERIEDLADPRLAPYTTMTDAALRRRVDAEHG------VF
+LAESSQVVRRALDAGHTPRSFLLGD--RYRGSFADVLAAHPDVPVFTGPDDVLEALTGFH
+LHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLT-PQ
+AADPLYRRAIRVSMGTVFRLPWARLPGPVAQSLPALRAAGFAVAALEV-TERAVGLDSAW
+IEPLRTAERLALVLGQEGPGVRPETLAQTDADVVIPMPAGVDSLNVAAAAAVALWELRAR
+------
+>TT9_LFPAFLNI_01102
+M----------GEGGAREVRLERIEDLADPRLAPYTTMTDAALRRRVDAEHG------VF
+LAESSQVVRRALDAGHTPRSFLLGD--RYRGSFADVLAAHPDVPVFTGPDDVLEALTGFH
+LHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLT-PQ
+AADPLYRRAIRVSMGTVFRLPWARLPGPVAQSLPALRAAGFAVAALEV-TERAVGLDSAW
+IEPLRTAERLALVLGQEGPGVRPETLAQTDADVVIPMPAGVDSLNVAAAAAVALWELRAR
+------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000149.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000149.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5283668896c2152daba0448b5ae7bb8dcee3d8f8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000149.fa
@@ -0,0 +1,90 @@
+>AS2_ACLBLIBL_01776
+MPKNSSTTVSSAV--ETHAGGLASGPGGARSGERDRIVVQGAREHNLKDVDVSFPRDAMVVFTGLSGSGKSSLAFDTIFA
+EGQRRYVESLSSYARMFLGRVDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLWARVGVPHCPQCGEPV
+SRQTPQQIVDQLEELPERTRFQVLAPVVRGRKGEFVDLFADLSTQGFARAVVDGETVQLSDPPVLKKQVKHTIAVVVDRL
+AMKEGIRQRLTDSVETALKLADGLVVAEFVDVEVVAEKGKKNTAEFGGRDAEGNPRYRSFSEKLSCPNGHEQTVDEIEPR
+SFSFNNPFGACPECTGIGSRLQVDPDLVVANDELSLREGAVVPWSLGKSTSDYWLRVLGGLAKEMGFSLDTPWRELEPAQ
+REAVL----------HGKDFKVEVTFRNRFGRERRYTTGFEGVVPYVLRKHGETESDGARERYESFMREIPCPVCHGARL
+NPTVLNVLVGGLSIAEATRLPLREARDFLAGL------------------ELSARERQIADQVLKEILARLAFLLDVGLE
+YLNLERPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLLRLRDLGNTLIVVEHDEDTIAEADW
+IVDIGPRAGEHGGEVVHSGSLEDLKANTASITGDYLAGRRAITAPQTRRAPQEGRT-LTVRGARENNLKDVSVDIPLGVL
+TAVTGVSGSGKSTLINEILYKVLANRLNGAKLVPGRHRAVDGL-----EHLD-----------KVVHVDQSPIGRTPRSN
+PATYTGVFDAIRKLFAETPEAKVRGYQQGRFSFNIKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCDGARYNRETLEVTY
+KGKNIAEVLDMPIEEAAQFFSAYTRISRYLDTLVDVGLGYVRLGQPATTLSGGEAQRVKLAAELQKRSNGRSVYVLDEPT
+TGLHFDDIRKLLQVLQSLVDKGNTVITIEHNLDVVKCADHVIDLGPEGGSGGGTIVATGTPEEVARVEASHTGRFLAELL
+--------A
+>KBS0714_MOLHKGIG_01117
+MPKNSSTTVSSAV--EAHPGGLASGSGGARSGERDRIVVQGAREHNLKDVDVSFPRDAMVVFTGLSGSGKSSLAFDTIFA
+EGQRRYVESLSSYARMFLGRVDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIYDYMRLLWARVGVPHCPQCGEPV
+SRQTPQQIVDQLEELPERTRFQVLAPVVRGRKGEFVDLFKDLSTQGFARAVVDGETVQLSDPPVLKKQVKHTIAVVVDRL
+AMKEGIRQRLTDSVETALKLADGLVVAEFVDVEPVAEKGRKNTAEFGGRDAEGNPRYRSFSEKLSCPNGHEQTVDEIEPR
+SFSFNNPFGACPECTGIGSRLQVDPDLVVANDELSLREGAVVPWSLGKSTSDYWLRVLGGLGKEMGFSLDTPWKDLTEAE
+RDAVL----------HGKDFKVEVTFRNRFGRERRYTTGFEGVIPYVMRKHGETESDGARERYESFMREIPCPACHGARL
+NPTVLNVLVGGLSIADATRLPMREAMEFFSGL------------------RLTDRERQIADQVLKEILARLAFLLDVGLE
+YLNLERPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLLRLRDLGNTLIVVEHDEDTIAEADW
+IVDIGPRAGEHGGEVVHSGSLADLKANTRSVTGDYLSGRRSIAVPERRRVPEKGRV-LTVRGAQENNLKDVSVEVPLGVL
+TAVTGVSGSGKSTLINEILYKVLANRLNGAKLVPGRHRSVEGL-----EHLD-----------KVVHVDQSPIGRTPRSN
+PATYTGVFDAIRKLFAETPEAKVRGYQQGRFSFNIKGGRCEACAGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVTY
+KGKNIAEVLDMPIEEAADFFSAYTRISRYLDTLVDVGLGYVRLGQPATTLSGGEAQRVKLAAELQKRSNGRTIYVLDEPT
+TGLHFDDIRKLLHVLQSLVDKGNTVLTIEHNLDVIKSADHVIDLGPEGGSGGGTIVAAGTPEEVAHVAESHTGRFLAELL
+--------A
+>KD337_NAFOICDF_01669
+MPKNSSSAAAPARPDAAARGGLASGPARG-SAQHERIVVKGAREHNLKNVDVSIPRDSMVVFTGLSGSGKSSLAFDTIFA
+EGQRRYVESLSSYARMFLGRVDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIYDYMRLLWARVGVAHCPVCGEVV
+SKQTPQQIVDQLEQLPERTRFQVLAPVVRGRKGEFVDLFSSLSTQGYARALVDGELIQLSDPPALKKQNKHTIAVVVDRL
+AVKEGIRQRLTDSVETALKLADGLVAVEFVDVDVVAQAGKKNQGDLAGEDAEGNPRFRTFSEKLSCPHGHPQTVDEIEPR
+SFSFNNPFGACPECTGIGSRLQVDPDLVVPNDELSLNEGAILPWSLGKSTSDYWLRVLGGLAKEMKFSLDTPFKDLTAQQ
+RDAVL----------NGKDFKVEVSFRNRFGRERRYTTGFEGVLPYVMRKHGETESDNARERYESFMRQIPCPACHGARL
+NPTVLNVRVGGLSIADATRLPLRESLAFLDGL------------------QLTERELAIADQVVREIRARLEFLLDVGLD
+YLNLERNAGTLSGGEAQRIRLATQIGAGLVGVLYVLDEPSIGLHQRDNRRLIDTLIRLRDLGNTLIVVEHDEDTIAEADW
+IVDIGPRAGEHGGEVVHSGSLDELKANTRSVTGDYLAGRRRIEVPAARRPVDPKRR-LTVKGATENNLKDVTVDIPLGVF
+TAVTGVSGSGKSTLINEILYKVLADKLNGAKMVPGRHRSVAGL-----EHLD-----------KVVHVDQSPIGRTPRSN
+PATYTGVFDQIRKLFAETPEAKVRGYQQGRFSFNIKGGRCEACAGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVTY
+KGKNIAEVLDMPIEEAAEFFGAYTRISRYLDTLVDVGLGYVRLGQPATTLSGGEAQRVKLAAELQKRSTGRTVYVLDEPT
+TGLHFEDIRKLLQVLQTLVDKGNTVLTIEHNLDVVKCADHVIDLGPEGGSGGGTVVATGTPEEVAAVPESHTGRFLAELL
+--------G
+>SA211_MHAAABBN_00373
+MVESSSFV-----------------PPKL-SVQPD-VRVLGARENNLQDVDLTVPRDATVVFTGVSGSGKSSLAFGTLYA
+ESQRRYLESVAPYARRLIDQAGVPDVDSITGMPPAVALQQQRGSGNARSTVGSITTLSSLVRMLYSRAG-----------
+------------------------------------------------------------DYP-----------------
+---------------------------------------------------EGQPM--------------------LYAE
+DFSANTVQGACSECHGIGRVYEVNEQQMVPDPSLTIRERAIASWP-----TAWHGHQLRDVLVALGYDVDVPWRDLPKKD
+RDWILYTDETPFVPVHSRLTLSESKAAIEAGVEPSYSGTFVGARRYILDTFANTKSASMKRRVAQFLTAAICPTCNGKRL
+KPEALSVTFEGFDIAEFSQLPLRELATILSGVVAREEDHEAASSDVRPTASRTPEKRAAAVQLASGVLQRLRPLVDLGLG
+YLSLSRTTPTLSGGELQRLRLATQLSSDLFGVVYVLDEPSAGLHPQDVAALLEILDGLKGRGNSLFIVEHSVAVMRHADW
+LVDIGPGAGEHGGRVLYSGPPDGLAGVTESVTRGYLFGGRGLPL----RTPREARSWLRLENVTRNNLHDLTVDIPLGVF
+TAVTGVSGSGKSSLVSQALPSLLGDRLGLAARADDEPVSDESLLADAPEHLEGRVAGPVTGVQRLVVIDQRPIGRTPRSN
+VATYTGLFDHVRRRFADTPEARSRGYKPGRFSFNVAGGRCPTCEGEGSVMVELLFLPSVYTECPDCHGTRYKASTLEVTW
+RGRTIADVLSMSVEEANLFFVGDEEITRSLAALSDVGLEYLRLGQPATELSGGEAQRVKLATELQRAQRGDTLYVLDEPT
+SGLHCADTDRLVAHLQTLVDAGNTVVAAELDMRVVAVADHVIDLGPGAGDAGGTVVAAGTPAHVADQGVGASAGYLAAAL
+QAATNVTPS
+>SA211_MHAAABBN_00836
+MPKNSSTTVSSAV--EAHPGGLASGSGGARSGERDRIVVQGAREHNLKDVDVSFPRDAMVVFTGLSGSGKSSLAFDTIFA
+EGQRRYVESLSSYARMFLGRVDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIYDYMRLLWARVGVPHCPQCGEPV
+SRQTPQQIVDQLEELPERTRFQVLAPVVRGRKGEFVDLFQDLSTQGFARAVVDGETVQLSDPPVLKKQVKHTIAVVVDRL
+AMKEGIRQRLTDSVETALKLADGLVVAEFVDVEPVAEKGKKNTAEFGGRDAEGNPRYRSFSEKLSCPNGHEQTVDEIEPR
+SFSFNNPFGACPECTGIGSRLQVDPDLVVANDELSLREGAVVPWSLGKSTSDYWLRVLGGLGKEMGFSLDTPWKDLTEAE
+RDAVL----------HGKDFKVEVTFRNRFGRERRYTTGFEGVIPYVMRKHGETESDGARERYESFMREIPCPACHGARL
+NPTVLNVLVGGLSIADATRLPMREAMEFFSGL------------------RLTDRERQIADQVLKEILARLAFLLDVGLE
+YLNLERPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLLRLRDLGNTLIVVEHDEDTIAEADW
+IVDIGPRAGEHGGEVVHSGSLADLKANTRSVTGDYLSGRRSIAVPERRRVPEKGRV-LTVRGAQENNLKDVSVEVPLGVL
+TAVTGVSGSGKSTLINEILYKVLANRLNGAKLVPGRHRSVEGL-----EHLD-----------KVVHVDQSPIGRTPRSN
+PATYTGVFDAIRKLFAETPEAKVRGYQQGRFSFNIKGGRCEACAGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVTY
+KGKNIAEVLDMPIEEAADFFSAYTRISRYLDTLVDVGLGYVRLGQPATTLSGGEAQRVKLAAELQKRSNGRTIYVLDEPT
+TGLHFDDIRKLLHVLQSLVDKGNTVLTIEHNLDVIKSADHVIDLGPEGGSGGGTIVATGTPEEVARAAESHTGRFLAELL
+--------A
+>TT9_LFPAFLNI_01067
+MPKNSSTTVSSAV--EAHPGGLASGPGGARSGERDRIVVQGAREHNLKDVDVSFPRDAMVVFTGLSGSGKSSLAFDTIFA
+EGQRRYVESLSSYARMFLGRVDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIYDYMRLLWARVGVPHCPQCGEPV
+SRQTPQQIVDQLEELPERTRFQVLAPVVRGRKGEFVDLFQDLSTQGFARAVVDGETVQLSDPPVLKKQVKHTIAVVVDRL
+AMKEGIRQRLTDSVETALKLADGLVVAEFVDVEPVAEKGRKNTAEFGGRDAEGNPRYRSFSEKLSCPNGHEQTVDEIEPR
+SFSFNNPFGACPECTGIGSRLQVDPDLVVANDELSLREGAVVPWSLGKSTSDYWLRVLGGLGKEMGFSLDTPWKDLTEAE
+RDAVL----------HGKDFKVEVTFRNRFGRERRYTTGFEGVIPYVMRKHGETESDGARERYESFMREIPCPACHGARL
+NPTVLNVLVGGLSIADATRLPMREAMEFFSGL------------------RLTDRERQIADQVLKEILARLAFLLDVGLE
+YLNLERPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLLRLRDLGNTLIVVEHDEDTIAEADW
+IVDIGPRAGEHGGEVVHSGSLADLKANTRSVTGDYLSGRRSIAVPERRRVPEKGRV-LTVRGAQENNLKDVSVEVPLGVL
+TAVTGVSGSGKSTLINEILYKVLANRLNGAKLVPGRHRSVEGL-----EHLD-----------KVVHVDQSPIGRTPRSN
+PATYTGVFDAIRKLFAETPEAKVRGYQQGRFSFNIKGGRCEACAGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVTY
+KGKNIAEVLDMPIEEAADFFSAYTRISRYLDTLVDVGLGYVRLGQPATTLSGGEAQRVKLAAELQKRSNGRTIYVLDEPT
+TGLHFDDIRKLLHVLQSLVDKGNTVLTIEHNLDVIKSADHVIDLGPEGGSGGGTIVAAGTPEEVAHVAESHTGRFLAELL
+--------A
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000150.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000150.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bceb2c308ec9c7de0e562954cdecdfd40d4e81fc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000150.fa
@@ -0,0 +1,72 @@
+>AS2_ACLBLIBL_01787
+MTSPLTRLHDALGLRTTPAIFFGSAAVVVLFTLAMGLFPGPVQAGFGVVSSWLRYDAGWIYTLSLTVLVAFLLLLAVTRY
+GRVKLGDDDAVPEYSGLAWFGMMFAAGVGAVLMFWGIAEPMNHYANPPLAGTEPFSDQAASQAMAIANFHFGIHMWAILL
+VPGLCFGYFTYKRKLPPRVSSAFQPLLGDRIHGPIGKAIDIVSVVSTVFGLGVSVGLGALQINAGMNYVFGTPVAGWVQA
+LILAVITAVGTASVLAGMDKGVKRLSYANILMAIALLVYVLMWAVSSMDVIRGTVQAVGEYLTMLPMLSTFNDTYNSGQW
+SGDWTVFYWAWTVTWAPFVGMFFAKISRGRTIRSFIAAGLGLPTAFVIIWMGIYGYSAFQSDRATAAAPGTGGDLTETIV
+TEGNVQAALFQHLQGTPLYTVAAVLALVVITLFFITSIDSGALVMDAMANGHEDPAPRRQSVIWAVSIGAVCAAIILTAG
+ENGLAALQEVIIVIGLPILLITVTQAGLLLQALREDAGTARPLRTRQWKPVLPAEEYHRRAHEEGVDVSDYVIRPEFEVG
+TEPEHDTHTPNTWHQQRTVAAKALVTVGLTGGIAAGRTVVGEELERLGAVVVEFDDLMGEILVPGSPVLEELREVFGDDV
+VRADGTLDARTLNRLTAESTTARTRMYEIVSPAVRDEANRRARAIGEDSVLVVDLALLAETGSAGDFDQVLAVSAPAEQR
+VARLMDSHDLPREQAWAFIDEEALDAERAEIADTVIENDGTLEDLHEAVRAYWEAKIQPQIEAARGVSP-----------
+---------------------------------------------------
+>AS2_ACLBLIBL_01788
+MNSLLTRLHDRLGLRTSPAVFFSAAAVIILFTVAMGVLPGPVQAVFGAAAHWLRYDVGWFYTLAATLLLAVCLILAVSRY
+GRVKLGDDDASPEYSGLAWFGMMFASGIGAVLMFWGIAEPMTHYALPPLEGTEPYSDQAAVQALNIANLHFGLHMWAILV
+VPGLCFGYFTYKRNLPPRVSSAFQLLLGDRIHGPIGKTIDVIAIVSTVFGMGVSTGMGALQINAGVNYVVGVPVAGWVQA
+LILAV-----------------------------ALMLWVLMWAASSMDVVRGVIESFGRTLGALPLLTTFNDTLGGGTW
+SGDWTLFYWAWTVSWAPSVGMFVARISRGRTIREFVFASLGLPTAFVIVWMGVYGYSAIFADRAAAPEAGTGGPLAQTIA
+VEGNVQVALFQSLQEMPLYLPIAVLALIVIVIFFVTSIDSGALVMDAMANGHEDLAPRRQRVFWGVSVGAVCTAIIVTAG
+DDGLNALREVIIVIGFPVMVLTVLQALLLLQALREDAGAARPLRTRQWKRVLPPEEYHRRAREDATVREEYAIRPEFEVG
+TEPEYETHTPNTWHAQQPAARRATVSVGLTGGVASGKSAVAAEFERLGAVVVDYDDLMREILVPGHPAVDELRDVFTAEV
+VADDGTVDWLALDALTAESPSARTRLHEVVAPVVRAETDRRATDAGESSVLVVDLALLVDAADVRDFDQVLEVLAPAEVR
+VARLMDERGLDREQAWAEVDADEQRRPALGGTHTVLANEGDRAELERSVRDWWDEVVEPARERGRRPGPRLRRLTRTVPP
+PPPAAGGGGRGWRPGAGSPYRRDRVPDGTRPSARPLDRPPRSVGDPVPGDS
+>KBS0714_MOLHKGIG_01106
+MTSPLTRLHDTLGLRTSPAIFFGSAAAVVLFTAAMGLFPGPVQAAFGVVSSWLRYDVGWIYTLSLTLLVAFLFILAVTRY
+GRVKLGDDDAVPEYSGLTWFGMMFAAGVGAVLMFWGIAEPMNHYANPPMAGTEPFSDRAASEAMAIANFHFGIHMWAILL
+VPGLCFGYFTYKRKLPPRVSSAFQPLLGDRIHGPIGKTIDIIAVVSTVFGLGVSVGLGALQINAGMNYVLGTPVAGWVQA
+LILAVVTAVGTASVLVGMDKGVKRLSYANILLAIALLVYVLMWAVSSMDVIRGTVQAIGEYASMLPVLSTYNDTYNSGQW
+SGDWTVFYWAWTVTWAPFVGMFFARISRGRTIRSFIMAGLGLPTAFVIIWMGIYGYSAFQSDRATAPAPGQGGDLTQTIV
+TDGNVQAALFQHLQGTPLYTVAAVVALVVITLFFITSIDSGALVMDAMANGHEDAAPRRQSVFWAVSIGAVCAAIILTAG
+ENGLAALQEVIIVIGLPILLITVTQAALLLQALREDAGAARPMRTRQWKQVLPVEEYRRRATEDGVDVSDFVIRPEFEVG
+TEPENDTHTPKTWHQQRIDAAKALVTVGLTGGIAAGRTEVGAELERLGAVVVEFDDLMGEILVPGNPVLEELRSVFGEDI
+VRADGTLDARTLNRLTTESSTARTRMYEIVSPAVRDEANRRAREIGEDSVLVVDLALLAETGSGQDFDQVLAVSAPAEVR
+VARLMESHDMTRERAWAFIDEEAADEERAEIADTVIENDGSLEDLQEAVRAYWEAKIQPQLEAARGERV-----------
+---------------------------------------------------
+>KD337_NAFOICDF_01679
+MNSLHTRVHDALGLRTSPAIFFTSAAVIVLFTAAMGLFPGPVQEVFGVVAGWLRYDIGWFYTLSATLLALFAVLLACSRY
+GRIKLGDDDATPEYTGVAWFGMMFAAGVGAVIMFWGIAEPMNHYANPPMPGTEPFSDQAALQAMDIANFHFTIHMWAILL
+VPGLCFGYFTYKRKLPPRVSSAFQPLLGDRIHGPIGKAIDVISVVSTVFGLAVSTGLGALQINAGMNYVLGTPVAGWVQA
+LILAVITAAGVCSVLAGMDSGVKRLSYINIVVAVALMLFVLMFSISTNDVLRGTVQSVGSFVGHLPVLSTFNDVFGSGRW
+SGDWTVFYWAWTVTWAPFVGMFVAKISRGRTIREFVTAGLGLPSIFTMIWMGIYGYSAFQADRATAAGPGQGGDLTRTIV
+EEGNVQAALFQHLQGMPLYLPVAIVALVVITLFFVTSIDSGALVMDAMANGHEDPAPRRQGAFWAISIGAVCAAIILTAG
+ENGLDALQEVIIVIGFPVMLLTLVQAAMLLQALREDAGAARPIRTRQWKQVLPAEEYHRRAQEDGVDIQEYVIRPEFEPG
+TEPEFDTHTPNTWHQQRTVAQRALLTLGLTGGMASGRTAVGEELERLGAVVVEFDDLLDELLVPGAPVLDEVREVFGDDV
+VRADGTLDARAMNALIDASEAARSRFYEIVSPLVRAEADARAKAIGDDAVLVVDLALLAETGSARDFDQVLAVSAPAEVR
+VQRLVDERHVTRERAWALLDEGAQDDERAAIADTVIENGGTREELRAAVEAYWAEKVAPAVEAARIAGG-----------
+------------------------------------------VG-------
+>SA211_MHAAABBN_00825
+MTSPLTRLHDTLGLRTSPAIFFGSAAAVVLFTAAMGLFPGPVQAAFGVVSSWLRYDVGWIYTLSLTLLVAFLFILAVTRY
+GRVKLGDDDAVPEYSGLTWFGMMFAAGVGAVLMFWGIAEPMNHYANPPMAGTEPFSDRAASEAMAIANFHFGIHMWAILL
+VPGLCFGYFTYKRKLPPRVSSAFQPLLGDRIHGPIGKTIDIIAVVSTVFGLGVSVGLGALQINAGMNYVLGTPVAGWVQA
+LILAVVTAVGTASVLVGMDKGVKRLSYANILLAIALLVYVLMWAVSSMDVIRGTVQAIGEYASMLPVLSTYNDTYNSGQW
+SGDWTVFYWAWTVTWAPFVGMFFARISRGRTIRSFIMAGLGLPTAFVIIWMGIYGYSAFQSDRATAPAPGQGGDLTQTIV
+TDGNVQAALFQHLQGTPLYTVAAVVALVVITLFFITSIDSGALVMDAMANGHEDAAPRRQSVFWAVSIGAVCAAIILTAG
+ENGLAALQEVIIVIGLPILLITVTQAALLLQALREDAGAARPMRTRQWKQVLPVEEYRRRATEDGVDVSDFVIRPEFEVG
+TEPENDTHTPKTWHQQRIDAAKALVTVGLTGGIAAGRTEVGAELERLGAVVVEFDDLMGEILVPGNPVLEELRSVFGEDI
+VRADGTLDARTLNRLTTESSTARTRMYEIVSPAVRDEANRRAREIGEDSVLVVDLALLAETGSGQDFDQVLAVSAPAEVR
+VARLMESHDMTRERAWAFIDEEAADEERAEIADTVIENDGSLEDLQEAVRAYWEAKIQPQLEAARGERV-----------
+---------------------------------------------------
+>TT9_LFPAFLNI_01055
+MTSPLTRLHDTLGLRTSPAIFFGSAAAVVLFTAAMGLFPGPVQAAFGVVSSWLRYDVGWIYTLSLTLLVAFLFILAVTRY
+GRVKLGDDDAVPEYSGLTWFGMMFAAGVGAVLMFWGIAEPMNHYANPPMAGTEPFSDRAASEAMAIANFHFGIHMWAILL
+VPGLCFGYFTYKRKLPPRVSSAFQPLLGDRIHGPIGKTIDIIAVVSTVFGLGVSVGLGALQINAGMNYVLGTPVAGWVQA
+LILAVVTAVGTASVLVGMDKGVKRLSYANILLAIALLVYVLMWAVSSMDVIRGTVQAIGEYASMLPVLSTYNDTYNSGQW
+SGDWTVFYWAWTVTWAPFVGMFFARISRGRTIRSFIMAGLGLPTAFVIIWMGIYGYSAFQSDRATAPAPGQGGDLTQTIV
+TDGNVQAALFQHLQGTPLYTVAAVVALVVITLFFITSIDSGALVMDAMANGHEDAAPRRQSVFWAVSIGAVCAAIILTAG
+ENGLAALQEVIIVIGLPILLITVTQAALLLQALREDAGAARPMRTRQWKQVLPVEEYRRRATEDGVDVSDFVIRPEFEVG
+TEPENDTHTPKTWHQQRIDAAKALVTVGLTGGIAAGRTEVGAELERLGAVVVEFDDLMGEILVPGNPVLEELRSVFGEDI
+VRADGTLDARTLNRLTTESSTARTRMYEIVSPAVRDEANRRAREIGEDSVLVVDLALLAETGSGQDFDQVLAVSAPAEVR
+VARLMESHDMTRERAWAFIDEEAADEERAEIADTVIENDGSLEDLQEAVRAYWEAKIQPQLEAARGERV-----------
+---------------------------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000153.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000153.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6eec75762f893cb8fe627619a296779c4548bf8e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000153.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_01822
+MSD----------SIPLDAVPAAIAAFAAGRPVVVVDDADRENEGDLVYAAALATDAVTAFTVRHTSGVICAPMPADLAD
+RLALPPMTARNEDPKGTAYTVSVDAATEVSTGISAADRTRTLRILADPAAGPADLTRPGHVFPLRAVPGGVRARRGHTEA
+GVELCRLADVAPVAAIAELVHDDGTMMRLPALREFADEHGLVLISIEDLVRHLEEEGPTPVPVPAEATLPTRHGVFRVSV
+HADAVTGAEHVLLVAKKAGEAGEADPERPLTVRVHSECLTGDVLGSLRCDCGPQLEDALSRAGSEG-GAVLYLRGHEGRG
+IGLANKVRAYRLQEQGLDTVEANIALGLPTEARDWAGAAAVLAAAGHTRVRLVTNNPAKVAGLQAAGIDVVERVPAPTPV
+TEHNLGYLRTKRDRMAHAL-----ADRVLEHPVAPG--------------------------------------------
+-----------------------------------------------------H----------EDPRHE----------
+--------------------------------------------------------------------------------
+-------TPTH-----------------------------QEDTP----
+>KBS0714_MOLHKGIG_00838
+MSL-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------------------------------EF----------------RTSEESPDVTRVVA-THLPTRHGDFALLG
+YRDG-RGTDHVALTL---GDVAADDGELPL-VRLHSECLTGDALGSYRCDCGEQLDAALQAIGAAGRGVLIYIRGHEGRG
+IGLLDKLRAYALQDSGIDTVDANTHLGLPADARDYDQSAQILRELGVGKIRLLSSNPAKQEALEALGIHVEARVRLNVAD
+RPENSRYLSTKRARMRHDLPPERNAWDLLAGARVPTGPLTPQEEALVLRYGPLVEAGPRLVIGQLGQSLDGFIASRTGDA
+CFVTGEADREHLHRLRALVDAVLVGAQTVAADDCQLTVRAVNGADPARVVVDPHARIPLTAKVLTDPRSRTLWLVGSDAS
+VPASLAPHVSVHRLETSTGFEPAAILQYLADQGLGRVLIEGGGLTVSGFLHAGVLDRLYLTSAPLLVGDGVPGIRFDGAD
+ALSGALSAPVRRFVLGDDVCTEFDFSAAKPASPAALHRADQENQPTGQD
+>KBS0714_MOLHKGIG_01065
+MSE----------HIRLDPVPVAIAAIAAGRPVVVVDDADRENEGDLIYAAALATDEVTAFTVRHTSGVICAPLPAGLAD
+RLALPPMTTVNEDPKGTAYTVSVDAAAGVTTGISAADRTRTLRLLADPGAAPGDLTRPGHVFPLRAVPGGVRARRGHTEA
+GVELCRLAGVAPVAAIAELVHDDGTMMRLPALREFSDEHGLVLISIEDLVAHLEETTPALTAVPAEATLPTRHGLFRVSV
+HVDAETGAEHLLLV------AGETDSERPLTVRVHSECLTGDVLGSLRCDCGPQLEDALARAAAEG-GAVLYLRGHEGRG
+IGLANKIRAYRLQEEGMDTVEANLALGLPAEARDWAGAAAVLTAAGHRRIRLVTNNPAKVAGLRAAGIDVVERVPAPTPV
+TEHNVVYLRTKRDRMAHAL-----ADRVLEPPTATGGPATPAD-------------------------------------
+---------------------------------------------------DPT----------TDPTH-----------
+--------------------------------------------------------------------------------
+--------PTH-----------------------------QEDTP----
+>KD337_NAFOICDF_01711
+MSIDTAVEPAAPVDIRLDPVADAVAAIAQGRPVVVVDDADRENEGDLIYAAALATDAVTAFTVRHTSGVICAPLPAELAD
+RLNLPPMTARNEDPKGTAYTVSVDAVAGVTTGISAADRTVTLRVLAGEESTAADLTRPGHVFPLRAVPGGVRARRGHTEA
+GVELCELADLPPVAAIAELVHDDGTMMRLPALREFADEHSLVLISIEDLVAHLHEHRPEQRVVPAEAALPTAHGDFRISV
+HPDTATGAEHVLLVADRPGSATGGDADAPVTVRVHSECLTGDVFGSLRCDCGPQLQAALDAAARDG-GAVLYLRGHEGRG
+IGLTNKIRAYRLQEEGLDTVEANLALGLPAEGRAYAGAADLLREAGLTRIRLVTNNPAKVDALRAAGIDVVERVPAPTPV
+TEHNAAYLRTKRDRMHHEL-----ADRDL------G--------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------DA-----
+>SA211_MHAAABBN_00784
+MSE----------HIRLDPVPAAIAAIAAGRPVVVVDDADRENEGDLIYAAALATDEVTAFTVRHTSGVICAPLPAGLAD
+RLALPPMTTVNEDPKGTAYTVSVDAAAGVTTGISAADRTRTLRVLADPGAAPGDLTRPGHVFPLRAVPGGVRARRGHTEA
+GVELCRLAGVAPVAAIAELVHDDGTMMRLPALREFSDEHGLVLISIEDLVAHLEETTPTLTAVPAEATLPTRHGLFRVSV
+HVDAETGAEHLLLV------AGETDPERPLTVRVHSECLTGDVLGSLRCDCGPQLEDALARAAAEG-GAVLYLRGHEGRG
+IGLANKIRAYRLQEEGMDTVEANLALGLPAEARDWAGAAAVLTAAGHRRIRLVTNNPAKVAGLRAAGIDVVERVPAPTPV
+TEHNVVYLRTKRDRMAHAL-----ADRVLEPPTATGGPATPAD-------------------------------------
+---------------------------------------------------DPT----------TDPTH-----------
+--------------------------------------------------------------------------------
+--------PTH-----------------------------QEDTP----
+>TT9_LFPAFLNI_01012
+MSE----------HIRLDPVPAAIAAIAAGRPVVVVDDADRENEGDLIYAAALATDEVTAFTVRHTSGVICAPLPAGLAD
+RLALPPMTTVNEDPKGTAYTVSVDAAAGVTTGISAADRTRTLRVLADPGAAPGDLTRPGHVFPLRAVPGGVRARRGHTEA
+GVELCRLAGVAPVAAIAELVHDDGTMMRLPALREFSDEHGLVLISIEDLVAHLEETTPTLTAVPAEATLPTRHGLFRVSV
+HVDAETGAEHLLLV------AGETDPERPLTVRVHSECLTGDVLGSLRCDCGPQLEDALARAAAEG-GAVLYLRGHEGRG
+IGLANKIRAYRLQEEGMDTVEANLALGLPAEARDWAGAAAVLTAAGHRRIRLVTNNPAKVAGLRAAGIDVVERVPAPTPV
+TEHNVVYLRTKRDRMAHAL-----ADRVLEPPTATGGPATPAD-------------------------------------
+---------------------------------------------------DPT----------TDPTH-----------
+--------------------------------------------------------------------------------
+--------PTH-----------------------------QEDTP----
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000158.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000158.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0ae5b73f29e469cd8a434f148d19fe95db4b08d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000158.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_02168
+MSRSAAVVPEAAPAPLAVAEHLELRHGDHLAVEASSFTLPAGCVVAVIGPNGSGKSTLLQ
+ALAGVLDPAAGRLEVRG---ESPSRHGRLTSFVMQSLQFPQGVPLTVRDVVTMGRYTTAG
+WFRRLGATDRAAVAAAMERVRVTDLADRHLDQLSGGQRQRVYVAQGLAQEHDVLMLDEPV
+TGLDIVSARTIDEIIHEQPERGVSVVYTTHDLDEAAAADHVVLMD-GRVVASGPPAQVLT
+AANLDAVYGRGALHAPLLV------HLDDPADCSPDRG
+>KBS0714_MOLHKGIG_00762
+MNASFPAGAAAATPPLAVARALELRHGSHVAVRPSDFTLPARRLIAVIGPNGSGKSTLLT
+ALAGLSDPASGALEVLG---EDPRRRSQRTSFVMQSIGVPQGVPVTVRDVVGMGRYPTLG
+WFRRFRREDRDIVRAAMERMQVADLARRHLDQLSGGQRQRAYVAQGLAQDHDVLLLDEPM
+TGLDIVSARTIDDLLHEEPTRGVSVVYTTHDLDEAAEADHVVLMG-GRVVASGSPRDVLT
+VENLDIAYGRGALHGPSTAVEDAADFLDDPAG--GRRH
+>KD337_NAFOICDF_00528
+MN---PAAPAPAIRLADVSAAYDRRRPVFTG---ADLVIDGPGLVRVHGRNGGGKSTLIE
+LVSGYLRPSDGQVRIGGLPAHDPRAHERRRVCRTEPALYPL-----------MDVHDHVV
+FASRWAGADPAEGLARAERYGLGPWMHAPAQTLSTGNRRRLWIVQCTVGAFDTVVLDEPF
+NGLDDESSAVLAAELAAW-ARTRCVVLICHLPPPGLAFDRVVRWPPGQAAADPAP-----
+-----------------------------PAD-PGVRP
+>KD337_NAFOICDF_02063
+MTRTVPTAPTPGAGVLAEARGLELRRAAHVAVAPSDLTLPAGVLVAVIGPNGSGKSTLLH
+ALAGTLEPAAGSLTVRG---ESPSRHARRTAFVMQTIPVPQGVPLTVRDVVRMGRYPRVG
+WFGRFGAADREAVDAAMERMSVTDLARRHLDELSGGQRQRVYVAQALAQEHDVLMLDEPL
+TGLDLVSARTIDRLLHEEPARGVSVVHTTHDLDEAAAADFVVLMS-GRVVAAGTPRQVLT
+EANLEAAYGHGVLHGPRLP------FLDDPVD--GVR-
+>SA211_MHAAABBN_00492
+MNASFPAGAAATPPPLAVARALELRHGSHVAVRPSDFTLPARRLIAVIGPNGSGKSTLLT
+ALAGLSDPASGALEVLG---EDPRRRSQRTSFVMQSIGVPQGVPVTVRDVVGMGRYPTLG
+WFRRFRREDRDIVRAAMERMQVADLARRHLDQLSGGQRQRAYVAQGLAQDHDVLLLDEPM
+TGLDIVSARTIDDLLHEEPTRGVSVVYTTHDLDEAAEADHVVLMG-GRVVASGPPRDVLT
+VENLDIAYGRGALHGPSTAVEDAADFLDDPAG--GRRH
+>TT9_LFPAFLNI_00726
+MNASFPAGAAAAPPPLAVARALELRHGSHVAVRPSDFTLPARRLIAVIGPNGSGKSTLLT
+ALAGLSDPASGALEVLG---EDPRRRSQRTSFVMQSIGVPQGVPVTVRDVVGMGRYPTLG
+WFRRFRREDRDIVGAAMERMQVADLARRHLDQLSGGQRQRAYVAQGLAQDHDVLLLDEPM
+TGLDIVSARTIDDLLHEEPTRGVSVVYTTHDLDEAAEADHVVLMS-GRVVASGPPRDVLT
+VENLDIAYGRGALHGPSTAVEDAAEFLDDPAG--GIRH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000160.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000160.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e15038f23e99a0576a6423edeb6128ba181ee88e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000160.fa
@@ -0,0 +1,126 @@
+>AS2_ACLBLIBL_02222
+MGWTVRILGGRTPETWRVSPLPRDPTLRDRAVRERAPGRSLRAVASGPGSVTYAPWGGAEP-----APGPELSVVTERGP
+DGGRLAPLTGGGVSVGRGRARLLLDDPAAPSRPTRLRLAAAGLHVEGAVEGAPRLWDGRRPHRIGRTTLGLVRGPQPPLP
+PPSLPAPPCVDLGSPPAGQSLAIPLLTAAAPLVIGVALVLVMRNPIFLLFGLLSVAVALTMLGLQRRARMRHAALLAE--
+-RAAAVTAHR------------ASAALSPGDVARAVRARTPDRF-----------------------GLTGA-AEGPAT-
+------LSWGLGMGALGLSRDD-----PDQAWVAAVTARREALTVPSPAARTVVLG-----PPR--------EAAGVCRW
+VVFQLLRHAVAAGACLVVESGGSRRCWWAGGTGGALLVTAPADAA--LEAAWTAWTAGIGG------APG-ERTGAQPAR
+I------------------------------------------------------DFTGADCAPGET-VVDLRGGMLTDP
+GQEQRI---------TGLEADGIAPATLPGWAAELADDVVDLGLLP--ADAGAGALFPPADVGTRDAVDALRVSLEAGSD
+GGPGALALDLAAD---GPHLLLAGTTGSGKSDLLLSLLLGVAAHHPPAEAAFLLLDFKGGASFGPLAALPHTMSLETNHV
+GAASL--RALNAIRAELHRREALFAEAG----VSDYPAFRRRH-----PEAALPRLVVAVDELRVLVDDHPDAAAVLQRL
+AATGRSLGFHLVLATQRATGAVGSDLRSNLGSTIALRTATEQESWDLVGTAAATRLDPRRPGSAILSTAGREPVPFRASR
+------------------WAVDGGAPVWRR---LG-----------EAAETPAAAPW---------KAVVAQLVERYAAG
+RWPTP-PPVVTPALPERWVPDRTRRAGATA---------------LALLDDAAHGRHRPWRWAPGGGGRAAWIVE--PAG
+GRAEALAAVLEVGVRGGAP----VVVLDGTGEAAAIAAPE---------GVRLLRPDEEGA--GERAA------------
+---------------ACLRELAAAGGTAVLTGWTTWAGLRLGESYRTLEEDAQGWLGGREAAGLRVAAFGGRE-LATSRL
+LLHLPHRFFVPAGTSAEHRLVW-PRLVEV-EPLPGRAVHVSPDVPEPGLPC--QLASPGAHRSGAADAASTL--------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------
+>KBS0714_MOLHKGIG_00731
+MAWSVRILGGAAPETWRVEHFPADADEQDRAVRERFPARSLHRCAAGPRSVTYAERVGSAP-----ARGPELAVVTEHGP
+DAGRLVPLGEGGLSTGRGGARLLLDDPSAPSRPMRLRLAPTGLHVHDGPRDTGRLWDGRSPLPVGRTALGLVRGPGAALP
+RPVTPEPPAVDLGSPPARQSVVIPLVAALGPLVLGVALVLMMGNPVFLLFGVLSVTVALVMLAMQRRTRLRHARLLAA--
+-RADALVRRR------------AQAALSPGAVARAVRSGATDRF-----------------------GLTSG-ADEAVA-
+------VSWGSGVGALSLSRDD-----PDEAWVEAVTSRRTVMTTSPPESRVVVLG-----PPR--------DVAGACRW
+AVFQLLRHAVAADGAFVVEAGGVRRTWWSGGSGPRLLVSAPEDAA--LDPAWRAWRAAIGGDA--GTTPT-ARADLPWTR
+Y------------------------------------------------------DFTGPSPAPGDA-VVDLRGRTVVVP
+AEQQRF---------EDVTADGLADGTLVAWLTELADDVVDLGLLP--ADDGDGTLTPPGQVGARDAVDGLTVTLARSGD
+-ETGVVEMDLAAD---GPHLLIAGTTGSGKSDLLLSLLLGAAAHHPPAEVAFLLLDFKGGASFGPLGALPHTMSLETNHV
+GTASL--RALSAIRAELHRREALFAEAG----VSDYPGFRRRH-----PDAALPRLVVAIDELRVLVDDHPDAAAVLQRL
+AATGRSLGFHLILATQRATGAVGSDLRSNLGSTIALRTATEQESWDLVGTAAAARLDPRRPGSAILSTAGRPTVSFRASQ
+------------------WTVDGGTPVWRR---LG-----------EAAAAPAVAPW---------EAVVSVLVENYAAG
+DWPTP-PPVVTPALPERWVPDRARRAEATA---------------LALLDDAAHGRHRPWRWPTGAEGRTAWIVE--AAG
+GRAETLAAVVEVALRSGRP----VAVLDGTGEAAA-AARS---------GTPVLTPDAEGA--GEAAL------------
+---------------ARLRELAAAGGTAVITGWNAWSGLRVGDTYRTVEEDVHDWLGRPTAAGLRLAVFGGRE-LATGRL
+LLHLPHRFFVPAGTNAEHRLIW-PRLTEV-EPLPGRAVHISPAVPEPGMPC--QLASPAPA-------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------
+>KD337_NAFOICDF_00342
+MTRRL-----------------------------------VHR-----------------P-------------------
+--GRTVP-----------PARLLPED--------------------------------------------VITGPQ----
+----PVDPAMDQGSGP-NLLMIVPMVAAAASMLTMMAFRQSPFAAVGALAMVVTLTAMLILYGSQAGKARRRRTTLRETY
+TRYLDRQRRRLIAEDEQARAIAASAAPPPGALLDVVR--RPDRLWERRRTDEDFLQTRVGLGARPVRALRVA-VQDNATQ
+VQDEFMLKQAESLATRFRTTDDMPVSLPLDSLGNLAVVGPREFGLTA--ARSLVLGACVQQAPEDLVVALLVPPERRADW
+PWFDRLPHARVADAA--------------SPTGNRLLVAADADDLMRMLRADLARRAGIAAETLRASTRD-GRAATELSR
+LVIVVDSHGEPAAGLPLEGSHLPLVSRGITLITLVSDRLDEPSDVRLRLSATGGTDVTGAAEFQVDD-ARQDEGRPTVSH
+GRLDTFDAATALGVATDLQPLRLSADSLEHAEDDLSSTQTFLQMLGLSPELTLEELRRRWRPRGQDEF--LRVPIGEDDR
+GDAVHLDLKEAAQLGMGPHGLCVGATGSGKSELLRALVFALLASHAPERMSLLLVDFKGGATFAPFHGAPHVAGIITNLS
+DDLSLVERVYASLSGEILRRQEVLKAAGNLANITDYQVHRERELAQGRSVEALPHLIVIIDEFGELLTARPDFIDLFLSI
+GRIGRSIGVHLLLSSQRIESGRLRGLETYLSYRLGLRTLSESESRTVLDTADAFHLPP-LPGFGYLKVDTSVYTRFRSGY
+VSSPLEEEAAARAEQERVLTADDDVPPALPVPDYGLQLVLPTEGAEPQLSSGAGAAQVMEEPEDHRPTIMETLMD--RLR
+EVPSPVEPLWLPPLPEALTLDQAAGDVAVTDHGLRLPAGGDLEVPIGLIDDPEHQWQGLWMLDF-ASGSGHLIVQGGPRS
+GKSTLLQTIVTSLALTHSPQQVGVYCVDLLGSSLL-PLQG----LPHVGGVAIRTNREMVTRTLREVSAMLTLREKLFEA
+EGIDSMTTLRRRHADGSLPDLGSADVFLVLDGYG-----QVNEEFADLTPVLNGLISRGAAYGIHIITTVARQGEIRSTQ
+QTFFTHRVELRLSTPSDSAIDR-KAAEEVREDTPGRGLASTRLHGQVALPRVDGAADPGTAAEGLAETVQRIAESARGEA
+MAVRVLPPTTERPPLEQLEDPGRLPVGLLEDDLSVRSLDIDGRERHVVALGDAQTGRSSMLRQFARHFMDTHADTEMMFV
+VFDPRGELKGVIPDAYMAGYAGNATVAVPLARALVSELEKRQSTDPKDAGPMRQARIVVLVDDYDVLTVAGDSPLAPLLP
+YLPMARELKLHVFLTRRMKGASRGLYEKFLASLVSQDAVTLMFSGDRSEGVLFDGLRPKRLPPGRAVLIGASRRHETVQT
+FTGPPAPGRG
+>KD337_NAFOICDF_02098
+MTWRVRVLGLPVEQDWAVSELPLDVDGQDRVVAEHFAPLRVERARGGGTTLTYVAHPSGTPPVPAAGSGPELAVGTSAGP
+DAGRLVPLTAAGLTVGRGRSRMLLDDPQCPSRPVRLALGPSGVSVDDG--RTRRTWDGLDGLPIGDSILRLVRGRQRPLP
+PALTPPPAQIDLGAAPAEQSLLVSLAMAVGPVLIGLVLAVTTRSPLFLLFGIVSLLGVGVLLGVQRRTRRRHADLLRE--
+-RALDVVRRR------------VAAVSGPADVSAACRAKAEDRF-----------------------GLVSARPGDGPA-
+------LLWGRARGSVAFTRGD-----VADHWRSAACVDQPVLGVAAADRGTVLCG-----TGR--------PAQAAARW
+TLFQLLRHAVATGSSLVVRSPDGARVWWPAVPGAPTIALELEDTA-PLAGAWEVWTASLGAEM--SETRRHGCADEVLVR
+--------------------------------------------------------CTGTPPADLDADVVDLDARQATLP
+GQGLEL---------TDLTPLGISADTLQWWLAELADDVAHLGLGG--PPASAPPLRRPHDVGAHRAVRNLAVPLTSSSA
+GDAAPMVLDLAAD---GPHALIAGTTGSGKSDLLLSVLVGLAARHAPAEVSFVLLDFKGGASFGPLRRLPHTMSVETNHV
+GAASL--RALQAIGAELRRREALFAEAR----VADYPAFRAAH-----PDTALPRLVVAVDELRVLVDEHPDANAVLQRL
+AATGRSLGFHLLLATQRPGGAVSADVRSNLGTTIALRTATEQESWDLVGSAAASRIDPAAPGTALLARGTGAPVPFRASP
+------------------WSAGPVRPRWTP---WGV----------PVASAASGTDW---------PSVVEDLVQACRDR
+DLPIP-EPVVSPPLPGSFAPDRSRRRSADV---------------LALVDDAARARHVPWRWPLGAQGNGAWIVE--PAG
+GRALVLAAVLEAAGRTSPA----VLILDGSGECAA-ALPTVADALPDLADVTLLTPEAQPADVGEQVC------------
+---------------GAVADLAAVGGTLVITGWQSWAGVRVGETYRTLDEELHRLLGTQAARGLRVAAVGGRE-LVTARI
+APHLPHRFYVPAGTTPDHRLVWPPKLVEV-EQLPGRAVHVHPGGPTVGVPA--QLAFPAHSAAGAGTDSDDQ--------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------Q
+>SA211_MHAAABBN_00462
+MAWSVRILGGAAPETWRVEHFPADADEQDRAVRERFPARSLHRCAAGRRSVTYAEGVGSAP-----ARGPELAVVTEHGP
+DAGRIVPLGEGGLSVGRGGARLLLDDPSAPSRPMRLRLAPTGLHVHDGPRATGRLWDGRSPLPVGRTALGLVRGPGSALP
+RPITPEPPVVDLGSPPARQSVVIPLVAALGPLVLGVALVLMMGNPMFLLFGVLSVTVALVMLAMQRRTRLRHARLLAA--
+-RADAVVRRR------------ARVALSPGAVARAVRSGATDRF-----------------------GLTAG-ADEAVA-
+------VSWGSGVGALSLSRDD-----PDEAWVEAVTSRRTVMTTSPPESRVVVLG-----PPR--------DVAGACRW
+AVFQLLRHAVAADGAFVVEAGGVRRIWWSGGSGPQLLVMAPEDAA--LDPAWRAWRAAIGDDA--GTTPT-ARTDLPWTR
+Y------------------------------------------------------DFTGPPPAPGDA-VVDLRGRTVVVP
+AEQQRF---------EDMAADGLADGTLVAWLTELADDVVDLGLLP--TDDGDGTLTPPGQVGARDAVDGLTVALARSRD
+-EAGVVEMDLAAD---GPHLLIAGTTGSGKSDLLLSLLLGAAAHHPPAEVAFLLLDFKGGASFGPLGALPHTMSLETNHV
+GAASL--RALSAIRAELHRREALFAEAG----VSDYPGFRRRH-----PDAALPRLVVAIDELRVLVDDHPDAAAVLQRL
+AATGRSLGFHLILATQRATGAVGSDLRSNLGSTIALRTATEQESWDLVGTAAAARLDPRRPGSAILSTAGRPTVSFRASQ
+------------------WTVDGGTPVWRR---LG-----------EAAAAPAVAPW---------EAVVSVLVENYAAG
+DWPTP-PPVVTPALPERWVPDRARRAEATA---------------LALLDDAAHGRHRPWRWPTGAEGRTAWIVE--AAG
+GRAETLAAVVEVAMRSGRP----VAVLDGTGEAAT-AARS---------GTPVLTPDSEGA--GEAVL------------
+---------------ARLRELAAAGGTAVITGWNAWSGLRVGDTYRTVEEDVHDWLGRPAAAGLRLAVFGGRE-LATGRL
+LLHLPHRFFVPAGTNAEHRLVW-PRLTEV-EPLPGRAVHISPAVPEPGMPC--QLASPAPA-------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------
+>TT9_LFPAFLNI_00695
+MAWSVRILGGAAPETWRVEHFPADADEQDRAVRERFPARSLHRCAAGPRSVTYAERVGSAP-----ARGPELAVVTEHGP
+DAGRLVPLGEGGLSTGRGGARLLLDDPSAPSRPMRLRLAPTGLHVHDGPRDTGRLWDGRSPLPVGRTALGLVRGPGAALP
+RPVTPEPPAVDLGSPPARQSVVIPLVAALGPLVLGVALVLMMGNPVFLLFGVLSVTVALVMLAMQRRTRLRHARLLAA--
+-RADAVVRRR------------AQAALSPGAVARAVRSGATDRF-----------------------GLTSG-ADEAVA-
+------VSWGSGVGALSLSRDD-----PDEAWVEAVTSRRTVMTTSPPESRVVVLG-----PPR--------DVAGACRW
+AVFQLLRHAVAADGAFVVEAGGVRRTWWSGGSGPRLLVSAPEDAA--LDPAWRAWRAAIGGDA--GTTPT-ARADLPWTR
+H------------------------------------------------------DFTGPSPAPGDA-VVDLRGRTVVVP
+AEQQRF---------EDVTADGLADGTLVAWLTELADDVVDLGLLP--TDDGDGTLTPPGQVGARDAVDGLTVTLARSGD
+-ETGVVEMDLAAD---GPHLLIAGTTGSGKSDLLLSLLLGAAAHHPPAEVAFLLLDFKGGASFGPLGALPHTMSLETNHV
+GTASL--RALSAIRAELHRREALFAEAG----VSDYPGFRRRH-----PDAALPRLVVAIDELRVLVDDHPDAAAVLQRL
+AATGRSLGFHLILATQRATGAVGSDLRSNLGSTIALRTATEQESWDLVGTAAAARLDPRRPGSAILSTAGRPTVSFRASQ
+------------------WTVDGGTPVWRR---LG-----------EAAAAPAVAPW---------EAVVSVLVEKYAAG
+DWPTP-PPVVTPALPERWVPDRARRAEATA---------------LALLDDAAHGRHRPWRWPTGAEGRTAWIVE--AAG
+GRAETLAAVVEVALRSGRP----VAVLDGTGEAAA-AARS---------GTPVLTPDVEGA--GEAAL------------
+---------------ARLRELAAAGGTAVITGWNAWSGLRVGDTYRTVEEDVHDWLGRPTAAGLRLAVFGGRE-LATGRL
+LLHLPHRFFVPAGTNAEHRLIW-PRLTEV-EPLPGRAVHISPAVPEPGMPC--QLASPAPA-------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000166.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000166.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7797f0ed6a54299ae7c623710a5587aa19609aca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000166.fa
@@ -0,0 +1,48 @@
+>AS2_ACLBLIBL_02458
+MTVTAEREKALLESVPTGL-LIDGEWRDASSGKTFDVKDPATGKVIASLQDANSDDAMAAFDAACAA--QADWARTPAKE
+RADILRRAYDLINERAEDFALLMTLEMGKPLAEARGEVTYGNGFLRWFSEEAGRHYGRTLTVPEGTLRMQVHHRPVGPCL
+LITPWNFPLAMATRKVGPAVAAGCTMVIKAAKLTPLTTQLFAQVMQEAGLPKGVLNVVAGSSASSISSPILQDRRLRKVS
+FTGSTPVGVRLMKDAADNVLRTSMELGGNAPLIVFEDADLDAAVEGAFAAKMRNMGEACTAANRFLVHEDVAEEFTQKFV
+AKLEALKPLRGTDPESTLGPIVDEGARDDIDQLVQDAVAAGGEVLTGGH---KIEGDGYFYAPTAI-KVEKGNPILQQEI
+FGPVAPIVTFSSEEEAIEMANDTEYGLASYVFTKDQARMYRVAESIEFGLMGYNVGVISNPAAPFGGVKQSGLGREGGAE
+GIEEYTTVQYI------GIADPWAAVKA
+>KBS0714_MOLHKGIG_00489
+MTVTAEREKALLESVPTGL-LIDGEWRDASSGKTFDVKDPATGKVIASLQDANSDDAMAAFDAACAA--QADWARTPAKE
+RADILRRAYDLINERAEDFALLMTLEMGKPLAEARGEVTYGNGFLRWFSEEAGRHYGRTLTVPEGTLRMQVHHRPVGPCL
+LITPWNFPLAMATRKVGPAVAAGCTMVLKAAKLTPLTTQLFAQVMQEAGLPKGVLNVVAGSSASSISSPILQDRRLRKVS
+FTGSTPVGVRLMKDAADNVLRTSMELGGNAPLIVFEDADLDAAVEGAFAAKMRNMGEACTAANRFLVHEDVAEEFTQKFV
+AKLEALKPLRGTDPESTLGPIVDEGARDDIDQLVQDAVAAGGEVLTGGH---KIEGDGYFYAPTAI-KVEKGNPILQQEI
+FGPVAPIVTFSSEEEAIEMANDTEYGLASYVFTKDQARMYRVAESIEFGLMGYNVGVISNPAAPFGGVKQSGLGREGGAE
+GIEEYTSVQYI------GIADPWAATKA
+>KD337_NAFOICDF_02342
+MTVTAEREKALLESVPTGL-LIDGEWRDASSGKTFDVKDPATGKVIASLQDANSDDAMAAFEAAVAA--QADWARTPAQE
+RADILRRAYDLINERAEDFALLMTLEMGKPLAEARGEVVYGNGFLRWFSEEATRHYGRTMIMPDGKLRMQVHHKPVGPSL
+LITPWNFPLAMATRKVGPAVAAGCTMVLKAAKLTPLTTQLFAQVMLEAGLPKGVLNVVSGSSASAISGPILEDPRLRKVS
+FTGSTPVGVRLMQDAAKNVLRSSMELGGNAPLIVFEDADMDKAVDGAFAAKLRNMGEACTAANRFLVHESVAEEFTRRFV
+ERLEALKPLRGTDPESTLGPIVDEGARDDIHALIEEAVAAGGEILTGGH---KIEGDGYFYAPTAL-KVGKDNPILKKEI
+FGPVAPIVTFSTEEEAIQMANDTEYGLASYVFTEDNARMHRVTEQIDFGIVGYNVGVVSNPAAPFGGVKQSGLGREGGAE
+GIAEYTTVQYI------GIEDPFAGR--
+>SA211_MHAAABBN_00210
+MTVTAEREKALLESVPTGL-LIDGEWRDASSGKTFDVKDPATGKVIASLQDANSDDAMAAFDAACAA--QADWARTPAKE
+RADILRRAYDLINERAEDFALLMTLEMGKPLAEARGEVTYGNGFLRWFSEEAGRHYGRTLTVPEGTLRMQVHHRPVGPCL
+LITPWNFPLAMATRKVGPAVAAGCTMVLKAAKLTPLTTQLFAQVMQEAGLPKGVLNVVAGSSASSISSPILQDRRLRKVS
+FTGSTPVGVRLMKDAADNVLRTSMELGGNAPLIVFEDADLDAAVEGAFAAKMRNMGEACTAANRFLVHEDVAEEFTQKFV
+AKLEALKPLRGTDPESTLGPIVDEGARDDIDQLVQDAVAAGGEVLTGGH---KIEGDGYFYAPTAI-KVEKGNPILQQEI
+FGPVAPIVTFSSEEEAIEMANDTEYGLASYVFTKDQARMYRVAESIEFGLMGYNVGVISNPAAPFGGVKQSGLGREGGAE
+GIEEYTSVQYI------GIADPWAATKA
+>TT9_LFPAFLNI_00488
+MTVTAEREKALLESVPTGL-LIDGEWRDASSGKTFDVKDPATGKVIASLQDANSDDAMAAFDAACAA--QADWARTPAKE
+RADILRRAYDLINERAEDFALLMTLEMGKPLAEARGEVTYGNGFLRWFSEEAGRHYGRTLTVPEGTLRMQVHHRPVGPCL
+LITPWNFPLAMATRKVGPAVAAGCTMVLKAAKLTPLTTQLFAQVMQEAGLPKGVLNVVAGSSASSISSPILQDRRLRKVS
+FTGSTPVGVRLMKDAADNVLRTSMELGGNAPLIVFEDADLDAAVEGAFAAKMRNMGEACTAANRFLVHEDVAEEFTQKFV
+AKLEALKPLRGTDPESTLGPIVDEGARDDIDQLVQDAVAAGGEVLTGGH---KIEGDGYFYAPTAI-KVEKGNPILQQEI
+FGPVAPIVTFSSEEEAIEMANDTEYGLASYVFTKDQARMYRVAESIEFGLMGYNVGVISNPAAPFGGVKQSGLGREGGAE
+GIEEYTSVQYI------GIADPWAAAKA
+>TT9_LFPAFLNI_01553
+MTPTPD---------PTATQYIDGAWVPSSDGGTRTIHCPADGSEVGVVAEGTREDALAAIAAARRAFDSGEWSSTPAAE
+RGDLLIRLADHILEHRDEFARAEALDTGKRLVEAEGDMADIAACFRYFGKIADQNPGRLVDAGDPTVLSRVVTEPVGVCG
+MITPWNFPLLQAAWKIAPALAAGCTFVLKPAEQTPHTAILTMRALESLGLPAGVANLVLGPGAT-VGEPLSSHPDVDLVS
+FTGGLATGKTIAQAAAGTVKKVALELGGKNPNVIFPDAHYEAALDNALNAAFTDSGLVCSAGTRLIVHESIAERFVDDLV
+ERAGHIVMGGPFDEHAETGPLISAAHRDKVTDYVRRGVEAGARLRVGGHWGGEEHKDGFFYAPTVLDRCDRDNPAVIEEG
+FGPVITVETFSTEAEAIEIANHTEYGLAGAVWSSDAGTCQRVSRALRHGTVWINDYHPYLPQAEWGGFKASGIGRELGPT
+GLGEYVEHKHIYQNTEPAVTGWFADRR-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000167.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000167.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1f6ca80294c1fc9408c3e0b46c7962d1ec85f16f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000167.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_02509
+M------------------------ALIDAIHAREILDSRGNPTVEVEVLLTDGSLGRAA
+VPSGASTGEFEAVERRDGDTKRYLGKGVLDAVAAVE-EIADELEDEFAVDQRAVDRLMLD
+LDGTPNKGKLGANAILGVSMAVAAAAAQSSDLMLYKYLGGPNAHV--LPVPMMNILNGGA
+HADSNVDIQEFMIAPIGAPSFREALRWGTEVYHSLKKVLQEKGLSTGLGDEGGFAPSLES
+NRAALDLIAEAVEKAGYTLGED-IALALDVASSEFCE-KGAYTFEGQKRSAEDMVAYYTE
+LADNYPIVSIEDPLDENDWDGWRLLTEKLGDRVQLVGDDLFVTNVERLQRGIDDKAGNAL
+LVKVNQIGSLTETFDAIALAQRHMFHCMISHRSGETEDTFIADLAVATNAGQIKTGAPAR
+SDRVAKYNQLLRIEEDLADAAVYAGRSAFPRYRG
+>KBS0714_MOLHKGIG_00448
+M------------------------ALIDAIHAREILDSRGNPTVEVEVLLTDGSLGRAA
+VPSGASTGEFEAVERRDGDKKRYGGKGVLDAVAAVE-GIAEELEGEFAADQRAVDRAMRD
+LDGTPNKGKLGANAILGVSMAVAVAAAQASDLMLYKYLGGPNAHV--LPVPMMNILNGGA
+HADSNVDIQEFMIAPIGAPSFREALRWGTEVYHALKTVLQEKGLSTGLGDEGGFAPSLES
+NRAALDLIAEAVTKAGYRLGED-IALALDVASSEFFD-NGSYTFEGQQRSAEEMAAYYTE
+LVDNYPIVSIEDPLDEDDWDGWQHLTAQLGDRVQLVGDDLFVTNVERLQRGIDEKAGNAL
+LVKVNQIGSLTETFDAIALAQRHMFHCMISHRSGETEDTFIADLAVATNAGQIKTGAPAR
+SDRVAKYNQLLRIEEDLADAAVYAGRSAFPRFRG
+>KD337_NAFOICDF_00683
+MNDYISGIHHHGAHQGEYVTHHDHPVTIDAVHGARILDSRGYPTVRVSLELDDGRTVTGD
+APAGASTGAHEAVELRDGGSA-FGGRDVTQALHLIDTDISGLLTGRSWSAIGQIDAALAE
+LDGTTGYRRLGANSVVATSIAASRALAHAADLPLWQWIAEITGSTPRMPVPHFNVLNGGA
+HAANELDFQEFMIAPVNAGSMADAVRIGADVYHALAALVRDRFGSLGLGDEGGFAPSIAA
+PEEALDLLVDAIRTAGYEPGVDQVAIALDPAANEFSQGDGSYRVLNDSLDRDGLVDYYRH
+LIDTYPIRSIEDAFAEDDHEGFRRMQAALGDRIQIVGDDLYVTDPQRIRDGGEQQLTNAA
+LIKPNQIGTVSQTLGAIATAKSIGMASMVSHRSGETTDTFIADLVVGTGTGQIKSGAPGR
+GERVAKYNRLTEIAEQ---------HPELPYGLI
+>KD337_NAFOICDF_02380
+M------------------------AQIDAIHAREILDSRGNPTVEVEVLLTDGSLGRAA
+VPSGASTGEFEAVERRDGDTERYLGKGVQDAVNAVF-EIAEELEDELATDQRAVDQMMLD
+MDGTENKGKLGANAILGVSMAVAVAAADSADLPLYKYLGGPNAHV--LPVPMMNILNGGA
+HADSNVDIQEFMIAPIGAPSFREALRMGAEVYHSLKKVLQEKGLSTGLGDEGGFAPNLES
+NRAALDLIAEAVQKAGYTLGED-VALALDVASSEFCE-NGSYTFEGRQRSAEEMSAYYAE
+LVDAYPIVSIEDPLDENDWEGWEHLTEQLGDRVQLVGDDLFVTNVARLQRGIDEKAGNAL
+LVKVNQIGSLTETFDAIALAQRHMFHCMISHRSGETEDTFIADLAVATNAGQIKTGAPAR
+SDRVAKYNQLLRIEEDLADAAVYAGRSAFPRFQG
+>SA211_MHAAABBN_00169
+M------------------------ALIDAIHAREILDSRGNPTVEVEVLLTDGSLGRAA
+VPSGASTGEFEAVERRDGDKKRYGGKGVLDAVAAVE-GIAEELEGEFAADQRAVDRAMRD
+LDGTPNKGKLGANAILGVSMAVAVAAAQASDLMLYKYLGGPNAHV--LPVPMMNILNGGA
+HADSNVDIQEFMIAPIGAPSFREALRWGTEVYHALKTVLQEKGLSTGLGDEGGFAPSLES
+NRAALDLIAEAVTKAGYRLGED-IALALDVASSEFFD-NGSYTFEGQQRSAEEMAAYYTE
+LVDNYPIVSIEDPLDEDDWDGWQHLTAQLGDRVQLVGDDLFVTNVERLQRGIDEKAGNAL
+LVKVNQIGSLTETFDAISLAQRHMFHCMISHRSGETEDTFIADLAVATNAGQIKTGAPAR
+SDRVAKYNQLLRIEEDLADAAVYAGRSAFPRFRG
+>TT9_LFPAFLNI_00451
+M------------------------ALIDAIHAREILDSRGNPTVEVEVLLTDGSLGRAA
+VPSGASTGEFEAVERRDGDKKRYGGKGVLDAVAAVE-GIAEELEGEFAADQRAVDRAMRD
+LDGTPNKGKLGANAILGVSMAVAVAAAQASDLMLYKYLGGPNAHV--LPVPMMNILNGGA
+HADSNVDIQEFMIAPIGAPSFREALRWGTEVYHALKTVLQEKGLSTGLGDEGGFAPSLES
+NRAALDLIAEAVTKAGYRLGED-IALALDVASSEFFD-NGSYTFEGQQRSAEEMAAYYTE
+LVDNYPIVSIEDPLDEDDWDGWQHLTAQLGDRVQLVGDDLFVTNVERLQRGIDEKAGNAL
+LVKVNQIGSLTETFDAIALAQRHMFHCMISHRSGETEDTFIADLAVATNAGQIKTGAPAR
+SDRVAKYNQLLRIEEDLDDAAVYAGRSAFPRFRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000169.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000169.fa
new file mode 100644
index 0000000000000000000000000000000000000000..33a5ce68ff30fd14fb5291c146517a5bda24604c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000169.fa
@@ -0,0 +1,54 @@
+>AS2_ACLBLIBL_02541
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----------------------PTDAEPAADDTEGAALPVQDATRADAVRP-------GTARTDASAGDSKL-------
+AQAGAAAGTVLETVRDKVAIPLRDNVAIPAK--DKAVKVLKAKLAEAQERRRNK--------------R
+>AS2_ACLBLIBL_02542
+MGESTLYWIIGAIIVVLLILIILSVVASRRRRAAEAEAAEAQLERR--RVTPTAAGVGASHEDALEETHDADARPHTVA-
+----STGGDVAPAAAAGAAAGTTRLSQLDDVA----PVAAAAADADAESLPADGVAAGSGVTVDQQ-----DASDQS-VR
+PAAPAAPAGADTRGPNASVKSAGAAAAAVGLGAAGVAGGRGVTVDQQDAAADVPSTPASPSPVAQTPAAPSSAGATTAQD
+DRADRTAQDAADAEPVKGTVPLSEDAHAVPPAADPPSGGDAVADDAHLEAHTVATTEHGSVVVVTAEQDEDDQATA----
+--------------------------------------------------------------------------ASRETE
+--TETDDSRG-----DDAGQDRDAERAVAEGVAGGTGVTVDQKAV--------AEAAATQGAPASAAGAASAAGAAARRR
+DRGRRLDPACGGARLLQDRRH--AGHARPRRLRGAGRGRG---GDR--PARPPRRRP-----------GDARLHHPRDAP
+GRRAG------------AGPGRRRRGLPQGRGRDPAAPPRGRRPGAKPRRRPTSTRPRPRPPRRTAPAR
+>KBS0714_MOLHKGIG_00418
+MPESTLYWIIAAIIVVLLILIILSVIASRRRREAEAEAAETRLERR---------GTTADTADTAGEQAAAPAAPTRLSR
+LDEVAAEQDARPAAAVKPAGGPAA------------SETAAAGRETDESVA--GVAGGAGVTVDQQDAPRTDATAET-SR
+PTA--APTTRGTLRPAAAAPSTAREADTVGLGAAGVAGGSGITLDEQTPAADVAAAPASPSPVTETPA--PAAPAAEAPQ
+HRSHLTP----APEHVHGTVPAEEVAAEHTPTKEFATDAIPVAQGEHLETNTVATTAHGSVTVVAAESDQTQQNDADGAE
+RSAAGSLRIDGTPGVPGRVAEAGREPARTED-------------HRADAAQPAAVEPAAERPSLEAAAERPSLEATPATR
+RAEAPETHAG--------TTPATPLGGAPELDPTAASSGRAEDAT--PATRREARAAQSAAAAGTAA-TAGTAGTAAPTS
+STPTTVAPDT--------STSSAPTNEEPAEDDTEGAALPDLRADRDE-------------TRGSDAEGESKL-------
+AQAGAVAASAFETVRDKVAIPLRDNVAVPAK--DKAVKVVKDKLAQAQERRWGK--------------R
+>KD337_NAFOICDF_02410
+MPQSTLYWIIGIIIVVLVIILIVSSLRAKRGREEEAAAAGRHADSAPAPLAATAARGGTVGASTVPATGDAPADRTDGR-
+----AAGATALPSFDVDEVDRRAAEQREQDVVERRRATGAEAGAAGHAAVP--GVTGGSGVSVDEAEGVAKDATGQD-VT
+PVA-------DAQRRNGSSAAPAATGAGLGLAAAGVAGGTGVTVDDAGTGADLPAPKGSPAGVVEVAE--TQAEAAQA--
+--------DAAPAEHT--VVP-------------------GVAGGDAVTVDTADVQSSSAPQGAQAAAGRSDLTDAE---
+---ARTYPVTGLPGVPSAVDPEQVAAARVQDAAELKAAEGQGAEHERGASQPADPESVPGTVPLTGE--EAVIEAPVHTH
+--EMPEPVLGTPAYIQDSTTGQDPTEDLPEGQVYGTTPLSGEDAIVEPADQLPAEAAETEDRAASDAGTASAETAVVPVE
+ETETAVVPVA--------ETR--SADAGPSEDSVALTGQGVETADRVEPAAPVAGTPARDEARTHD-EHRSRLEIVKDAV
+AETAGTVATTAGTAAEKAAPVVRSAARTVGKAAGSAASTLKDKLAQAQERRWGK--------------R
+>SA211_MHAAABBN_00139
+MPQSTLYWIIAAIIVVLLILIIVSVIASRRRREAEAEAAETRLERR---------GV---SADTAGEQAAAPAAPTRLSR
+LDEVAAEKDARPAPAVRPAGGLAA------------FDTAAADRETDESGA--GVAGGAGVTVDQQDAPSTEATAQTHRR
+DAA--APATRGTLRPAPAVPSTVREADTVGLGAAGVAGGSGVTLDEQTPAADVPATPASPSPVTETPA--PAAPVAEAPQ
+QRSHLTP----APEHVHGTVPADEVAAEHTPTKEFATDGIPVPQGEHLETHTVATTAHGSVTVVATESDQAQQTGVDGTE
+RSAAGSLRIDGTPGVPGRVAEADREPARTDD-------------HGADVAQPAAVEPAAERPPLEAA---------PATR
+RAEAPETHAG--------TTPATPLGGAPELDPTAASSGRAEDAT--PATRREARAAQSAAA-------AGTAGTAAPTS
+STPTTVAPDT--------STSSAPTDEEPAEDDTEGAALPDLRADRDE-------------TRASDAEGESKL-------
+AQAGAVAASAFETVRDKVAVPLRDNVAVPAK--DKVVKVVKDKLSQAQERRWGK--------------R
+>TT9_LFPAFLNI_00421
+MPESTLYWIIAAIIVVLLILIILSVIASRRRREAEAEAAETRLERR---------GTTADTADTAGEQAAAPAAPTRLSR
+LDEVAAEQDARPAAAVKPAGGPAA------------SETAAAGRETDESVA--GVAGGAGVTVDQQDAPRTDATAET-SR
+PTA--APTTRGTLRPAAAAPSTAREADTVGLGAAGVAGGSGITLDEQTPAADVAAAPASPSPVTETPA--PAAPAAEAPQ
+HRSHLTP----APEHVHGTVPAEEVAAEHTPTKEFATDAIPVAQGEHLETNTVATTAHGSVTVVAAESDQTRQNDADGAE
+RSAAGSLRIDGTPGVPGRVAEAGREPARTED-------------HRADAAQPAAVEPAAERPSLEAAAERPSLEATPATR
+RAEAPETHAG--------TTPATPLGGAPELDPTAASSGRAEDAT--PATRREARAAQSAAAAGTAA-TAGTAGTAAPTS
+STPTTVAPDT--------STSSAPTNEEPAEDDTEGAALPDLRADRDE-------------TRGSDAEGESKL-------
+AQAGAVAASAFETVRDKVAIPLRDNVAVPAK--DKAVKVVKDKLAQAQERRWGK--------------R
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000170.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000170.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4b6c3d436b7f499862a311c39d311f34df564e16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000170.fa
@@ -0,0 +1,43 @@
+>AS2_ACLBLIBL_02547
+M--------------------SHVDTAPAASTPRTAEGRRPRRVKSQR-AKSEARLGWLL
+AGPAFFVMLFVVMYPILQALYDSLFKYRLTAPDDREFVGLGNYGVILSDPVFWKDLGVTL
+LITVVTVVVELILGFLLALAMHHAIKQTRGLIRTIILVPYGIITVVSAFAWFYMFSIDSG
+YINAWFEWLPGVDADLNWFAQSNTALSVIMLSEIWKTTPFISLLLLAGLAQVPGDLTEAA
+AVDGASWWQRMKLVILPNMKASI----MVAVLFRAMDAFRIFDSIYIMTNGAYGTEVLSL
+LAYRTSIGRLEIGMGSAVSVILFLCVALMAVIAVKGF-KVDLADRGGSK
+>AS2_ACLBLIBL_02646
+MFTEVLPQQQVAPRPEAATAEPGIAESGIAESRTATDAPRPAKQKSRRTGRSFSIVPYLY
+VLPAVALLLLWTYLPLAQTFELSFYDWNLLPTKAKEPVGLENYATVLTLPEMQQALGNTV
+LYIGAFFLLSVALPVIFALLSKRVSGRAKTIYQALIFVPYLVTPVATSAIWRWLFAEEGG
+TIPAVAHFF-GIDMG-NVFREPGASMIAVMVIVGWQLLGFGVLVVSAGLSGISPDYEHAA
+GVDGARRWQITSRITLPLLSPSLVFLSLMTILLSAQWTFPMIDIITQGGPSGSSTNIYYL
+L-YEFGFKNFDAGISAAAGVLFFIGFGLIALVFVELSEKLSFHD----N
+>KBS0714_MOLHKGIG_00412
+M--------------------SHVDTAPAASTPRAAEGRRPRRVKSQR-AKSEARLGWLL
+AGPAFFVMLFVVLYPILQALYDSLFKYRLTAPGDREFVGLGNYGVILTDPVFWKGLGVTL
+LITVVTVVVELILGFLLALAMHHAIKQTRGLIRTIILVPYGIITVVSAFAWFYMFSIDSG
+YINAWFEWLPGVDADLNWFAQGSTALFVIMLSEIWKTTPFISLLLLAGLAQVPGDLTEAA
+SVDGASWWQRMKLVILPNMKASI----MVAVLFRAMDAFRIFDSIYIMTNGAYGTEVLSL
+LAYRTSIGRLEIGMGSAVSVILFLCVALMAVIAVKGF-KVDLADRGGSK
+>KD337_NAFOICDF_02415
+M--------------------SHVDTAPAASTPRAAEGRRPRRVKSAR-AKSEARLGWLL
+AGPAFFIMLFVVLYPTVQAFYDSLFKYRLTAPQDREFVGLGNYGVILSDPVFWKDLGVTV
+LITLVTVLVELVLGFLLALAMHHAIKQTRGLIRTIILVPYGIITVVSAFAWFYMFSIDSG
+FVNNWFDWVPGITSDLNWFAQSGTALSVIMLSEIWKTTPFISLLLLAGLAQVPGDLTEAA
+AVDGASWWQRMKLVILPNMKASI----MVAVLFRAMDAFRIFDSIYIMTNGAYGTEVLSL
+LAYRTSIGRLEIGMGSAISVILFLCVALMAFTAVKVF-KVDLADRGGSK
+>SA211_MHAAABBN_00132
+M--------------------SHVDTAPAASTPRAAEGRRPRRVKSQR-AKSEARLGWLL
+AGPAFFVMLFVVLYPILQALYDSLFTYRLTAPGDREFVGLGNYGVILTDPVFWKGLGVTL
+LITVVTVVVELILGFLLALAMHHAIKQTRGLIRTIILVPYGIITVVSAFAWFYMFSIDSG
+YINAWFEWLPGVDADLNWFAQGSTALFVIMLSEIWKTTPFISLLLLAGLAQVPGDLTEAA
+SVDGASWWQRMKLVILPNMKASI----MVAVLFRAMDAFRIFDSIYIMTNGAYGTEVLSL
+LAYRTSIGRLEIGMGSAVSVILFLCVALMAVIAVKGF-KVDLADRGGSK
+>TT9_LFPAFLNI_00415
+M--------------------SHVDTAPAASTPRAAEGRRPRRVKSQR-AKSEARLGWLL
+AGPAFFVMLFVVLYPILQALYDSLFKYRLTAPGDREFVGLGNYGVILTDPVFWKGLGVTL
+LITVVTVVVELILGFLLALAMHHAIKQTRGLIRTIILVPYGIITVVSAFAWFYMFSIDSG
+YINAWFEWLPGVDADLNWFAQGSTALFVIMLSEIWKTTPFISLLLLAGLAQVPGDLTEAA
+SVDGASWWQRMKLVILPNMKASI----MVAVLFRAMDAFRIFDSIYIMTNGAYGTEVLSL
+LAYRTSIGRLEIGMGSAVSVILFLCVALMAVIAVKGF-KVDLADRGGSK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000174.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000174.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3607a449f2c59106fb980cdd709a641674cb1d92
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000174.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00004
+----------------------------------MLGAHPHPDGAAVTYRVLRPLARTVTVVRTGDGERVELAHEHDGVF
+AGVARMPRVAGAAAGDYRLEVAYETADGQTGPAQEQDDAYRHLPTLGELDLHLIGEGRHERLWEVLGARVVRTPAGEAVG
+TAFAVWAPNARAVRVVGEHNGWDGRGHAMRSLGSSGVWELLVPGVGHGHRYKFEILGRDGRWRQKADPMARWTEVPPATA
+SRVLESEYEFGDRTWMERRRTVDPHERPLSIYEVHLGSWRPGLDYRELAEQLVEYVQWLGFTHVEFLPVAEHPFGGSWGY
+QVTGYYAPTSRFGSPDEFKHLVDALHRAGIGVIVDWVPAHFPKDEWALARFDGTPLYEHADPRRGEHPDWGTYVFDFGRT
+EVRNFLVANALYWLAEFHIDGLRVDAVASMLYLDYSREDGQWEPNVHGGNHNLEAIDFLREVNATVYRVHPGVHMIAEES
+TAFSGVSAPVDAGGLGFGKKWNMGWMHDTLAYLSQDPVNRRWHHGQWTFSMVYAYSENYVLPLSHDEVVHGKGSLLTRIP
+GDRRHQLATLRAYYGYMWAHPGKQLLFMGGEYGQPSEWSEAEGLDWPVSWDESHRGVQLTVRELNALYRSKPALWSQDHS
+PAGFEWVDGGDADGNTLVFLRHPAERVVPEARIDDDGAAVSAAEPGGAPLLCITNLSGSPRQGLRVGVPGAGSGPWSWTP
+TPPTSTGTAGGSR------------------PGSPRC-----------------------
+>KBS0714_MOLHKGIG_00331
+MTPSAAPRPAVAPLAVDPEVLAAVAQGRHHDPHTVLGAHPHPDGAAVTYRVLRPLARTVTVVRAGDGQRVELTHEHDGVF
+AGVAPTPRVAGAAAGDYRVEVAYETEDGTTGPVQEQDDAYRHLPTLGELDLHLIGEGRHERLWEVLGARVVRTSADEAVG
+TAFAVWAPNARAVRVVGDHNGWDGRTHAMRSLGSSGVWELLAPGVGHGDRYKFEILGRDGLWRQKADPMARWTEVPPATA
+SRVLESDYAFGDRTWMERRRVTDPHERPLSIYEVHLGSWRPGLDYRELAEQLVEYVQWLGFTHVEFLPVAEHPFGGSWGY
+QVTGYYAPTSRFGSPDEFKHLVDALHQAGIGVIVDWVPAHFPKDEWALARFDGTALYEHPDPRRGEHPDWGTLVFDFGRT
+EVRNFLVANALYWLGEFHIDGLRVDAVASMLYLDYSREDGQWEPNVHGGNHNLEAIDFLREVNMTVYRLHPGVHMIAEES
+TAFSGVTAPVDAGGLGFGKKWNMGWMHDTLAYLSQDPVNRRWHHGQWTFSMVYAYSENYVLPLSHDEVVHGKGSLLSRIP
+GDRRQQLATLRAYYGYMWAHPGKQLLFMGGEYAQPSEWSEGEGLDWPVSWDEAHRGVQLTIRELNALYRSKPALWSLDHS
+PEGFAWVDGGDADGNTLVFLRMPAAQVVPEPRIDDDGDAVPAAEPGGAPLLCITNLSGSPRQGLRVGVPSAG----EWTV
+VLDTDSTDFHGDGWREQTGQSEVIAAHEGQWQGQPAHVTVNVPALTTLWLQPHPDSTVTP
+>KD337_NAFOICDF_00005
+MT-----SPTLSPQSVDPAVLAAVAEGLHHDPHAVLGAHPHPDGAAVTYRALRPFARAVTVVREGDAARIELAHEADGVF
+AGVGALPRKAGVAAGDYRLEVVYPGADGED-VVELHDDAYRHLPTLGELDLHLIGEGRHERLWEVLGARVRRAADGALVG
+TSFAVWAPNARAVRVVGDFNGWTGRTHAMRSLGSSGVWELLVPGVEHGAAYKFEILGADGQWQQNADPMARWTEVPPATA
+SRVMESEFAFTDRDWMERRRAEDPHERPLSIYEVHLGSWRPGLSYVDLAEQLVEYVQWLGFTHVEFLPVAEHPFGGSWGY
+QVTGYYAPTSRFGSPDEFKHLVNALHEAGIGVIVDWVPAHFPKDAWALGRFDGTALYEHPDPRRGEHPDWGTYVFNFGRT
+EVRNFLVANALYWLGEFHVDGLRVDAVASMLYLDYSREDGQWTPNALGGNHDLEAISFLQDVNATVYRVHPGILMIAEES
+TAFSGVSAPVSAGGLGFGKKWNMGWMHDTLAYLSEDPVNRRWHHDQWTFSMAYAYSENYVLPLSHDEVVHGKGSLLARIP
+GDHRQKLATLRAYFAYMWAHPGKQLLFMGGEYGQPSEWSEERGLDWAASWDESHRGVQLTVRELNALYRAKPALWSADHS
+PQGFTWVDGGDADGNTLVFLRRPGAGV------------------EGAPLLCITNLSGGTRQGLRVGVPSSG----EWTV
+VLDTDSTDFHGDGRREQAGQLEVIEAEDGQWQGQPAYLTLNVPPLTTLWLQPDED-----
+>SA211_MHAAABBN_00047
+MTPSAAPRPAVAPLAVDPEVLAAVAQGRHHDPHTVLGAHPHPDGAAVTYRVLRPLARTVTVVRAGDGQRVELTHEHDGVF
+AGVAPTPRVAGAAAGDYRVEVAYETEDGTTGPVQEQDDAYRHLPTLGELDLHLIGEGRHERLWEVLGARVVRTSAGEAVG
+TAFAVWAPNARAVRVVGDHNGWDGRTHAMRSLGSSGVWELLVPGVGHGDRYKFEILGRDGLWRQKADPMARWTEVPPATA
+SRVLESDYAFGDRTWMERRRLTDPHERPLSIYEVHLGSWRPGLDYRELAEQLVEYVQWLGFTHVEFLPVAEHPFGGSWGY
+QVTGYYAPTSRFGSPDEFKHLVDALHRAGIGVIVDWVPAHFPKDEWALARFDGTALYEHPDPRRGEHPDWGTLVFDFGRT
+EVRNFLVANALYWLGEFHIDGLRVDAVASMLYLDYSREDGQWEPNVHGGNHNLEAIDFLREVNATVYRLHPGVHMIAEES
+TAFSGVSAPVDAGGLGFGKKWNMGWMHDTLAYLSQDPVNRRWHHEQWTFSLVYAYSENYVLPLSHDEVVHGKGSLLGRIP
+GDRRQQLATLRAYYGYMWAHPGKQLLFMGGEYAQPSEWSEGEGLDWPVSWDEAHRGVQLTIRELNALYRSKPALWSLDHS
+PEGFAWVDGGDADGNTLVFLRMPAAQVVPETRIDDDGAAVPAAEPGGAPLLCITNLSGSPRQGLRVGVPSAG----EWTV
+VLDTDATDFHGDGWREQTGQSEVIAAHEGQWQGQPAHVTVNVPALTTLWLQPTLDTTATP
+>TT9_LFPAFLNI_00338
+MTPSAAPRPAVAPLAVDPEVLAAVAQGRHHDPHTVLGAHPHPDGAAVTYRVLRPLARTVTVVRAGDGQRVELMHEHDGVF
+AGVAPTPRVAGAAAGDYRVEVAYETEDGTTGPVQEQDDAYRHLPTLGELDLHLIGEGRHERLWEVLGARVVRTSADEAVG
+TAFAVWAPNARAVRVVGDHNGWDGRTHAMRSLGSSGVWELLAPGVGHGDRYKFEILGRDGLWRQKADPMARWTEVPPATA
+SRVLESDYAFGDRTWMERRRVTDPHERPLSIYEVHLGSWRPGLDYRELAEQLVEYVQWLGFTHVEFLPVAEHPFGGSWGY
+QVTGYYAPTSRFGSPDEFKHLVDALHRAGIGVIVDWVPAHFPKDEWALARFDGTALYEHPDPRRGEHPDWGTLVFDFGRT
+EVRNFLVANALYWLGEFHIDGLRVDAVASMLYLDYSREDGQWEPNVHGGNHNLEAIDFLREVNATVYRLHPGVHMIAEES
+TAFSGVSAPVDAGGLGFGKKWNMGWMHDTLAYLSQDPVNRRWHHGQWTFSMAYAYSENYVLPLSHDEVVHGKGSLLGRIP
+GDRRQQLATLRAYYGYMWAHPGKQLLFMGGEYAQPSEWSEGEGLDWPVSWDEAHRGVQLTIRELNALYRSKPALWSLDHS
+PEGFSWVDGGDADGNTLVFLRMPAAQVVPEPRIDDDGAAVPAAEPGGAPLLCITNLSGSPRQGLRVGVPSAG----EWTV
+VLDTDATDFHGDGWREQTGQSEVIAAHEGQWQGQPAHVTVNVPALTTLWLQPTLDTASTP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000178.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000178.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7a80c91d528b55d670ffcb650291a869436f1738
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000178.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_00012
+MAQRFYDTRTAQIRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDVLIRWLEATGL
+RVTSVRNVTDIDDKILDRSAASHEEGFEPSALYPAREPWWALAYRFEKAFDAAYLALGVR
+RPTYEPRATGHVPEMFALIERLVERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQ
+DAPDADPRGKRDPRDFALWKGAKEGEPATAVWTSPWGAGRPGWHLECSAMATKYLGAQFD
+IHGGGLDLRFPHHENELAQSAAAGDGFARFWLHNGLVAYGGEKMSKSVGNTISPEEMLGM
+ARPKAVRYFLGQAHYRSQLDYRPGALEEAEAAVERIENFTARARTAGAVPPAVDGALADR
+VPAAFRAAMEDDLNVPQALAALHEAVRAGNSALAAQDLESAAARLTEVEAMTAVLGLDDV
+PEGDGDGTGPAADALDSLVRSQIEARAQARAEKDWAAADRIRDALAAAGVVVEDGADGAT
+WRLAD
+>KBS0714_MOLHKGIG_00325
+MAQRFYDTRTAQVRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDILIRWLEATGL
+RVTSVRNVTDIDDKILERSAASHEAGFEASDLYPAREPWWALAYRFEKAFDAAYLALGVR
+RPTYEPRATGHVPEMFALIERLMERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQ
+DAPDADPRGKRDPRDFALWKGAKPGEPATAVWESPWGAGRPGWHLECSAMSTKYLGTEFD
+IHGGGLDLRFPHHENELAQSAAAGDGFARLWLHNGLVTYGGEKMSKSVGNTISPEEMLGM
+ARPTAVRYFLGQAHYRSQLDYRPGALDEAEAAVERIEGFTARARAAGAVPPAPDGALADR
+VPAAFRAAMEDDLNVPQALAALHEAVRAGNSALAGQDLDAAAARLAEVEAMTAVLGLDDV
+PEGDDAAAGPVSDALDSLVRSQIEARAQARADKDWATADRIRDALAAAGVVVEDGADGAT
+WRLAD
+>KD337_NAFOICDF_00008
+MAQRFYDTRSAEIRDFVPLVPGQASVYYCGATVQGMPHVGHVRSAIVFDVLIRWLEATGL
+RVTSVRNVTDIDDKILDRSAASQEPGFEPSEMYPADEPWWALAFRFENAFDAAYLALGVR
+RPTYEPRATGHVPEMLALIERLIERGHAYPAADGSGDVYFDVRSWDRYGELTRQRVEDMQ
+DAPDADPRGKRDPRDFALWKGAKEGEPVTAVWSSPWGAGRPGWHLECSAMSTKYLGGEFD
+VHGGGLDLRFPHHENELAQSAAAGDPFARFWLHNGLVTYQGEKMSKSVGNTISPQEMLAM
+ARPKAVRYFLGQAHYRSQLDYRPGALEEAEAAVERIENFVQRAAAALGAPEL-TAPLAEH
+VPAAFRAAMEDDLAVPQALAVLHEAVRAGNSALAAGDDAAARARLAEVAAMTAVLGLDDV
+PEASAGGSGPEAAALDSLVRSQIEARAQARADKDWATADRIRDALAAAGVVVEDGAQGAT
+WHLAG
+>SA211_MHAAABBN_00040
+MAQRFYDTRTAQVRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDILIRWLEATGL
+RVTSVRNVTDIDDKILERSAASYEAGFEASDLYPAREPWWGLAYRFEKAFDAAYLALGVR
+RPTYEPRATGHVPEMFALIERLMERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQ
+DAPDADPRGKRDPRDFALWKGAKPGEPATAVWESPWGAGRPGWHLECSAMSTKYLGTEFD
+IHGGGLDLRFPHHENELAQSAAAGDGFARFWLHNGLVTYGGEKMSKSVGNTISPEEMLGM
+ARPTAVRYFLGQAHYRSQLDYRPGALDEAEAAVERIEGFTARARAAGAVPPAPDGALADR
+VPAAFRAAMEDDLNVPQALAALHEAVRAGNSALAGQDLDAAAARLAEVEAMTAVLGLDDV
+PEGDDAAAGPVSDALDSLVRSQIEARAQARADKDWATADRIRDALAAAGVVVEDGADGAT
+WRLAD
+>TT9_LFPAFLNI_00332
+MAQRFYDTRTAQIRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDILIRWLEATGL
+RVTSVRNVTDIDDKILDRSAASHEAGFEASDLYPAREPWWALAYRFERAFDAAYLALGVR
+RPTYEPRATGHVPEMFALIERLIERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQ
+DAPDADPRGKRDPRDFALWKGAKPGEPATAVWESPWGAGRPGWHLECSAMSTKYLGAEFD
+IHGGGLDLRFPHHENELAQSAAAGDGFARFWLHNGLVTYGGEKMSKSVGNTISPEEMLGM
+ARPTAVRYFLGQAHYRSQLDYRPGALDEAEAAVERIEGFTARARAAGAVPPAPDGALADR
+VPAAFRTAMEDDLNVPQALAALHEAVRAGNSALAGQDLDAAAARLAEVEAMTAVLGLDDV
+PEGDDAAAGPVSDALDLLVRSQIEARAQARADKDWATADRIRDALAAAGVVVEDGADGAT
+WRLAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000180.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000180.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d4b0f075bc5088e87e4da0476399ef84f4d12ca5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000180.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00014
+-----------------------MVFEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKL
+KVAQGDLTIEVPAENVDLVGVRDVVDSEGLEEVVEVLQAEQVEEPTNWSRRYKANLEKLA
+SGDVKKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVSELALAKKVTEEEAEGMLDQV
+LEG
+>KBS0714_MOLHKGIG_00323
+-----------------------MVFEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKL
+KVAQGDLTIEVPAENVDLVGVRDVVDAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLA
+SGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLAKARQVLVSELALAKKVTEEEAEGRLDKV
+LEG
+>KD337_NAFOICDF_00010
+MPDTRGVFRVSVVESTDRKGAFHMVFEVGETVVYPHHGAARIEEIKTRTIKGEEKMYLKL
+KVAQGDLTIEVPAENVDLVGVRDVVDDKGLEHVVEVLQAEHVEEPTNWSRRYKANLEKLA
+SGDVNKVSEVVRDLWRRDHDRGLSAGEKRMLSKARQVLVSELALAKKVSEEEAEGMLDKV
+LEG
+>SA211_MHAAABBN_00038
+-----------------------MVFEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKL
+KVAQGDLTIEVPAENVDLVGVRDVVDAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLA
+SGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLAKARQVLVSELALAKKVTEEEAEGRLDKV
+LEG
+>TT9_LFPAFLNI_00330
+-----------------------MVFEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKL
+KVAQGDLTIEVPAENVDLVGVRDVVDAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLA
+SGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVSELALAKKVTEEEAEGRLDKV
+LEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000183.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000183.fa
new file mode 100644
index 0000000000000000000000000000000000000000..09163d3865e0527765b0e9bc67df48cd79723b4e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000183.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00017
+MDPVIIGLLCGAVGLFIGVASMLAFRASERSRTVDLAVGEPTLAPGAAEVLAVVGRAYAV
+VDDVDGVVRANPSAYALGLVRGHSLVQQQVKDLTRSVRAEGVIVERRLELPRGPLGQSSL
+VVELRVAPLDEEYILILADDRTDVTRTEAMRHDFVVNVSHELKTPVGAISLLAEAIGDAA
+EDEEAVRRFASRLGIESRRLTALVQDIIEFSRLQAKDVVQDGRAVDLNAVVADAVDRLRL
+TAEDRGITLRVGGRVDAVVHGDADQLMTAVRNLVDNAVRYSPEGTTVGIGLSSADGLAQV
+TVTDQGIGISPEEQERVFERFYRVDSARSRQTGGTGLGLSIVKHVVINHGGEVSLWSQPG
+RGSTFTIRLPEWEDDGAAVD-GPPAA-SHVTERRGHRVTASAASPPRKESSA
+>KBS0714_MOLHKGIG_00320
+MDPVIIGLLCGAVGLFTGVASMLAFRASERSRTVDLTVGEPTLAPGAAEVLSVVGRAYAV
+VDDVDGVVRANPAAYALGLVRGHSLVQDQLRELTRTVRADGVIVERRMELPRGPLGQSSL
+VVELRVAPLDEEYILILADDRTDVTRTEAMRHDFVVNVSHELKTPVGAISLLSEAIGDAA
+EDEEAVRRFAARLGVESRRLSALVQDIIEFSRLQAKDVVQDGGPVDLNAVVADAVDRLRL
+TAEDRGIALRVGGRVDAVVHGDQDQLMTAVRNLVDNAVRYSPEGTTVGIGLSSVDGLAQV
+TVTDQGIGISPEEQERVFERFYRVDAARSRQTGGTGLGLSIVKHVVINHGGEVTLWSQPG
+RGSTFTIRLPEW-GDGVAVD-GAPGA-AHVTERRGHRVTASAAPPTRKETSA
+>KD337_NAFOICDF_00013
+MDPVIIGLLCGAVGLLIGVASMLAFRASERSRTVDLSVEEPTLSPGAAEVLSVIGRSYIV
+VDAVDGVVRANPSAYAMGLVRGHTLVPDALRELTGAVRADGVVRERQVDLPRDPRHQSSL
+VVELRVAPLDDEYILVLAEDRTGAMRTEAMRHDFVVNVSHELKTPVGAISLLSEAIADAA
+DDDDAVRRFARRLGVESTRLTALVQDIIEFSRLQAKDVVREGRSVDLNLVVAEAVDRVRL
+TAEARGISIRAGGHVDTVVHGDPDQLMTAVRNLVDNAVRYSPDGTTVGVGLTSKDGLAQI
+TVTDQGIGISPEEQERVFERFYRVDAARSRQTGGTGLGLSIVKHVVINHGGEVTLWSQPG
+RGSTFTIRLPEWAQAPQTPDAGAPATVATLPERRGHRVAAAAA-PARKEHSA
+>SA211_MHAAABBN_00035
+MDPVIIGLLCGAVGLFTGVASMLAFRASERSRTVDLTVGEPTLAPGAAEVLSVVGRAYAV
+VDDVDGVVRANPAAYALGLVRGHSLVQDQLRELTRTVRADGVIVERRMELPRGPLGQSSL
+VVELRVAPLDEEYILILADDRTDVTRTEAMRHDFVVNVSHELKTPVGAISLLSEAIGDAA
+EDEEAVRRFAARLGVESRRLSALVQDIIEFSRLQAKDVVQDGGPVDLNAVVADAVDRLRL
+TAEDRGIALRVGGRVDAVVHGDQDQLMTAVRNLVDNAVRYSPEGTTVGIGLSSVDGLAQV
+TVTDQGIGISPEEQERVFERFYRVDAARSRQTGGTGLGLSIVKHVVINHGGEVTLWSQPG
+RGSTFTIRLPEW-GDGVAVD-GAPGA-AHVTERRGHRVTASAAPPTRKETSA
+>TT9_LFPAFLNI_00327
+MDPVIIGLLCGAVGLFTGVASMLAFRASERSRTVDLTVGEPTLAPGAAEVLSVVGRAYAV
+VDDVDGVVRANPAAYALGLVRGHSLVQDQLRELTRTVRADGVIVERRMELPRGPLGQSSL
+VVELRVAPLDEEYILILADDRTDVTRTEAMRHDFVVNVSHELKTPVGAISLLSEAIGDAA
+EDEEAVRRFAARLGVESRRLSALVQDIIEFSRLQAKDVVQDGGPVDLNAVVADAVDRLRL
+TAEDRGIALRVGGRVDAVVHGDQDQLMTAVRNLVDNAVRYSPEGTTVGIGLSSVDGLAQV
+TVTDQGIGISPEEQERVFERFYRVDAARSRQTGGTGLGLSIVKHVVINHGGEVTLWSQPG
+RGSTFTIRLPEW-GDSVAVD-GAPGA-AHVTERRGHRVTASAAPPTRKETSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000187.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000187.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7dbb3e2ee8849f78f3f6dd716c51cb9e2203f786
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000187.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00022
+MSTETEH--------------------------RGLFVAVEGPDGSGKSTQARALVAALR
+AAGREAVLTREPGGSDLGETLRGLLLDPAHAPVDPRTEALLFAAARAAHAVRTLRPALAR
+GAVVVTDRYVDSSVAYQGAVRGLGEEWIARLNDWATDSLVPDLTVLIDVDAATAAARRTG
+RDGDG---ADRMEQETADQHEALRAAFLARAAAAPERYLVLDGALDPEELTARALARVTA
+EADA-------R
+>KBS0714_MOLHKGIG_00315
+MSTQTEH--------------------------RGLFVAVEGPDGSGKSTQARALTEVLR
+AAGHEVVLTREPGGSDLGETLRELLLDPEHAPVDPRTEALLFAAARSAHAVRTLRPALAR
+GALVVTDRYVDSSVAYQGAARGLGEARIAALNEWATDGLVPDLTVLIDVDAATAADRRER
+RAAGGEGAPDRMERETADRHEALRAAFLARAAAAPERYLVLDGALPPQELTARALARVTA
+EAAD-------R
+>KD337_NAFOICDF_00018
+MSTPSPRPAPHPAPTPAADPADSPAAAAQGMPGRGLFVAFEGADGTGKSTQARAVAQALR
+DAGREVVLTREPGGSDLGEAVRALLLDPAHAPVDARTEALLFAAARAAHVARTVRPALAA
+GTVVLTDRYVDSSVAYQGEVRGLGAERVAELNDWATEGLVPDLTVLLDADAATAEARRAA
+RHAGGGDAPDRMEQETAQAHGTLRAAFRARAAAAPHRYLVLDAAGAPEELTAAIAARVLT
+AAADAARDGTGA
+>SA211_MHAAABBN_00030
+MSTQTEH--------------------------RGLFVAVEGPDGSGKSTQARALTEALR
+AAGHEVVLTREPGGSDLGETLRELLLDPGHAPVDPRTEALLFAAARSAHAVRTLRPALAR
+GAVVVTDRYVDSSVAYQGAARGLGEARIAALNEWATDGLVPDLTVLIDVDAATAADRRDR
+RAAEGEGTPDRMERETADRHEALRAAFLARAAAAPERYLVLDGALPPQELTARALARVTA
+QAAD-------R
+>TT9_LFPAFLNI_00322
+MSTQTEH--------------------------RGLFVAVEGPDGSGKSTQARALTEALR
+AAGHEVVLTREPGGSDLGETLRELLLDPGHAPVDPRTEALLFAAARSAHAVRTLRPALAR
+GAVVVTDRYVDSSVAYQGAARGLGEARIAALNEWATDGLVPDLTVLIDVDAATAADRRDR
+RAAGGEGSPDRMERETADRHEALRAAFLARAAAAPERYLVLDGALPPQELTARALARVTA
+QAAD-------R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000191.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000191.fa
new file mode 100644
index 0000000000000000000000000000000000000000..da9eab0eeec9270daa2b01ef07afae8517e6fd21
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000191.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00029
+MSSLFRRHAVATAACTVLVLAPASAAPALAVETVAADETTISLLSFNDFHGALSSDFSGTQFADTVEDYRTAFEAQHGER
+SVLLTSAGDLIGGSASVSNVQQDDPTIDVMNALGLSALAAGNHEFDRGLDDLQDRVIPRAEFPVLAANFVDPDTLEPILA
+SHAIFDVNGVSVAVIGAVPNELYATTTGAGLQGNTVLDMVEAVNGVAAELEASGAADVIVASYHEGAAG-AGDLAAELGK
+REVFRSMVEDTHPAVDVIFNGHTHQLYQYETAGDGVARPVLQAGASGSNLAAVELTVDAAGEVTAVASRLLDRSTQDPAE
+AAAESAVTAEVYAIEQEAVAVFEDMQSQVVADLDGSLTTDYQKRLDEGGTWRAGGTRSAETTLGNWVADATKQTALNADP
+EVDLGVVNPGGLRSEILVDAFTGGGTFSPKPADLIGKLTLGELLDVAPFGNSISYFDIPGSSIELALEQNWRDDVRTFTL
+GWSENLTWTYDESRPQGEKVTGVWIDGEPLEQDAIYTVATQSFLADDTWVALGDPTAAPDGYTAFATGREDFVDLGVLDT
+QAISDYARLQASAEGAVGPDFAKKGVPVSGAPETVAAGEEIVLTLGDLVIDSDDAPAAAEVAVAFEAADGTVTELGSVTV
+PAGSEEVTLSGIAAPAEAGAGELRMTVRYADGTETIVRHALEVTASEAPVEPTEPTDPTVPADPSEPADP---------A
+DPTVPADPS---EPADPADPSDPTDPAAPVEGDDDGD-------------------DRDEEHTVPSTVETGDASAWWLAG
+FGALLGAALLRGRRALG-LTASSTPAGR
+>KBS0714_MOLHKGIG_00308
+MPSLFRRRAVTTAACTVLVLAPASAAPALAVETAAADETTISILSFNDFHGALSADYIGTQFADTVEDYRTAFEAEHGAG
+STLLTSAGDLIGGSKSVSNVQQDNPTIDVMNALGLASLTAGNHEFDKGLDDLQGRVESRAQFPVLSANLVDPTSKEPVLT
+SHAVFDVDGVRVAVIGASPNELYATTTGAGLKGNEVLDEVAAVNAVADELEAQDAADVIVASYHDGAAG-AGELAAERAA
+RAEFDRIVGETSSAVDVIFNAHTHQLYQYDTTAGGAHRPVIQAGASGSHLAAVELTVGADGEVTGLTPRLLARSTQAPAE
+AAAESPVTAQVYAIEQEAVAVFEDLQGEVVADLSASITTDYQKLIDAGGSWKAGGTRAAETTLGTWVGDAVKHAAEQANP
+EVDLGVTNPGGLRSELLTDRFTDGGAFPAKPADLVGRLTLGELLDMAPFGNTITYFDIPGSSIKLALEENWRNDVRKFTL
+GWSEELTWTYDESRPQGDKVTGVWIDGEPLQADRMYTVASQSFLADDTWTTLGDPTKAPDGYTAFATGRQNFVNMGLLDS
+QAITDYARAQDAAHGAVAPDFGKNGVPVTDAPASVEAGQAVGLTLGDLVVDSDGAPAATAVDVAFRTADGTETALGTVAV
+PAGSETVTLSGITAPAAAGTGELVMTVRYADGSTTVVRHALEVTAAPSPTEPEQPA------------------------
+-------------------------PTHPGKGHGKGH-------------------DKDADHPGKGRVKGEDHPG---KG
+RGVQRGAATHPVFSAQAWLTAAGLP--R
+>KD337_NAFOICDF_00025
+MSSIFSRRTAATLACTTLVLAPA-AAPALAAD--ASGERTISVLSFNDFHGALSEDFKGTQFADTVEDYRTAFEAQHGEG
+STLLTSAGDLIGGSASVSNVQQDNPTIDVMNALGLASLTAGNHEFDRGLDDLQGRVADRADFPVLSANFVDPNTKAPVLT
+SHKVFDVDGVRVAVIGASPNELYATTTGAGLQGNLVVDMVDAVNAVATGIEAADEADVIIASYHDGAAGAAADLSAELGN
+RATFDAMVERTVPAVDVIFNGHTHQLYQYQTDNGGVPRPIMQAAASGADLAAVELTVDAAGEVTAVTPRMLPRSTQDPAE
+AAAESPVTARVYEIEQQAVDVFTDMQSQVIADLSGSITTDYATRIAAGMGWKAGGTRTAETTLGNWVADSLKHSVSAAEP
+GVDLGVVNPGGIRSELLVDQTNAGGVFSPKPEQLVGKLTMGEVMDVAPFGNTLTYFDLPGSSIKEALEQNWRDGERTFTL
+GWSSNLTWTYDDARAQGDKVTGVWIDGEPLQADRMYTVAAQSFLADDTWVKLGDPSKAPDGYTAFATGRQGFVDLGVLDT
+TAVLSWARAQDAADGAAHPDYAKKGVPVTGAPASVEGGQDVVLTLGDLVIDSDGAPAATAVDVAFQGADGAVTELGTVEV
+PAGQESVTLSGITAPQTAGAGELVMTVRYADGTTAVVRHALEVTASAAPVDPSTPAEPTQPGEPSDPAEPTTPGEPTPSA
+QPTAPVEPTAPVEPSAPAEPTAPVEPTAPAESPEPTPTAQPSTPAEPTAPTPSAPAEDGGEHAVPGKVQTGDQAIWLVAA
+LGALGAGALVAVRRRAA---------AR
+>SA211_MHAAABBN_00023
+MPSLFRRRAVTTAACTVLVLAPASAAPALAVETAAADETTISILSFNDFHGALSADYIGTQFADTVEDYRTAFEAEHGAG
+STLLTSAGDLIGGSKSVSNVQQDNPTIDVMNALGLASLTAGNHEFDKGLDDLQGRVESRAQFPVLSANLVDPTSKEPVLT
+SHAVFDVDGVRVAVIGASPNELYATTTGAGLKGNEVLDEVAAVNAVADELEAQDAADVIVASYHDGAAG-AGELAAERAA
+RAEFDRIVGETSSAVDVIFNAHTHQLYQYDTTAGGAHRPVIQAGASGSHLAAVELTVGADGEVTGLTPRLLARSTQAPAE
+AAAESPVTAQVYAIEQEAVAVFEDLQGEVVADLSASITTDYQKLIDAGGSWKAGGTRAAETTLGTWVGDAVKHAAEQANP
+EVDLGVTNPGGLRSELLTDRFTDGGAFPAKPADLVGRLTLGELLDMAPFGNTITYFDIPGSSIKLALEENWRNDVRKFTL
+GWSEELTWTYDESRPQGDKVTGVWIDGEPLQADRMYTVASQSFLADDTWTTLGDPTKAPDGYTAFATGRQNFVNMGLLDS
+QAITDYARAQDAAHGAVAPDFGKNGVPVTDAPASVEAGQAVGLTLGDLVVDSDGAPAATAVDVAFRTADGTETALGTVAV
+PAGSETVTLSGITAPAAAGTGELVMTVRYADGSTTVVRHALEVTAAPSPTEPEQPA------------------------
+-------------------------PTHPGKGHGKGH-------------------DKGADHPGKGRVKGEDHPG---KG
+RGVQRGAATHPVFSAHAWLTAAGLP--R
+>TT9_LFPAFLNI_00315
+MPSLFRRRAVTTAACTVLVLAPASAAPALAVETAAADETTISILSFNDFHGALSGDYIGTQFADTVEDYRTAFEAEHGAG
+STLLTSAGDLIGGSKSVSNVQQDNPTIDVMNALGLASLTAGNHEFDKGLDDLQGRVESRAQFPVLSANLVDPTSKEPVLT
+SHAVFDVDGVRVAVIGASPNELYATTTGAGLKGNEVLDEVAAVNAVADELAAQDAADVIVASYHDGAAG-AGELAAERAA
+RAEFDRIVGETSSAVDVIFNAHTHQLYQYDTTAGGAHRPVIQAGASGSHLAAVELTVGADGEVTGLTPRLLTRSTQAPAE
+AAAESPVTAQVYAIEQEAVAVFEDLQGEVVADLSASITTDYQKLIDAGGSWKAGGTRAAETTLGTWVGDAVKHAAEQANP
+EVDLGVTNPGGLRSELLTDRFTDGGAFPAKPADLVGRLTLGELLDMAPFGNTITYFDIPGSSIKLALEENWRNDVRKFTL
+GWSEELTWTYDESRPQGDKVTGVWIDGEPLQADRMYTVASQSFLADDTWTTLGDPTKAPDGYTAFATGRQNFVNMGLLDS
+QAITDYARAQDAAHGAVAPDFGKNGVPVTDAPASVEAGQAVGLTLGDLVVDSDGAPAATAVDVAFRTADGTETALGTVAV
+PAGSETVTLSGITAPAAAGTGELVMTVRYADGSTTVVRHALEVTAAPSPTEPEQPA------------------------
+-------------------------PTHPGKGHGKGH-------------------DKGADHPGKGRVKGEDHPG---KG
+RGVQRGAATHPVFSAHAWLTAAGLP--R
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000192.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000192.fa
new file mode 100644
index 0000000000000000000000000000000000000000..651e6448c7b2bb977f31a5f69b2853fb08aaff1f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000192.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_00030
+MTQRTFRLSRPAVALAALTLLAPAVVAGPAHAAPTGDGLVINEVYTNGGSANAVFTHKFVELYNPTDTPISLDGWSLQYR
+SATGTAAPNGVVALSGTVPAKGHFLIQGGSNGTTGAALPRPDLNAGGAFNPAGARGTVVLSDQAGALTALPVGSVTTGQA
+EGVADLLGYGTSNTFETAAAGAPSSNSDPKSLTRTDGVDTDDNAADFTVTAQVTPTSSTG--EAPVDPIPDPEPDPEPAP
+ALTIAQIQGDGAATPYAGRQVTTTGVVTAVYSTGGYDGYYIQTAGTGGSAEDATPGASDGLFVYSPDTVGSVALGDHVQV
+TGEAAEHYGLTQVRVGAAGVTPVAEPAA-VAPTAVDFPLSEADREALEGMLLAPTGEWTVTDNYDLNQYGSLGIVPGTEP
+LPNPTSVAAPGAEAQAVAADNASRLIVLDDGASTNFMRSPGNENPLPYLDADRPVRVGAGLDFTTGVILDYRFDAWSFQP
+LGHLTDATAAAVQPVAVEDTRPEEASPEAVGGNVSVGSFNVLNYFTALGQDFPGCRAYTDRFGEPVTTNGCLPRGAYTPE
+AFARQQEKIAAAIDGLDASVVALEEIENSAKFDLDRDRALAHLVDALNAQAGEQKWAYVASPADRPALSEEDVIRNAFVY
+QPAEVTPVGESVILRDEVNFDNAREPLAQHFRAADGTEAGVAGTDFVAVTNHFKSKGGSGAAGDNADSGDGQGAYNGDRT
+RQAQALVAFAEQVADDAGTDRVLLLGDFNAYEKEDPIRVLEEAGYVSQGALTGEYSYTFDGAVGSLDGVYASPAASAVVT
+GQDIWMINANESVALEYSRHDYVAEDLYAPDQWRSSDHNPLLVGLQLDAPVVEPEPQPGA----------------GHPG
+K------------GKGLDKGAGHPGKGKGLDKGAGHPGHGRVPEAARP
+>KBS0714_MOLHKGIG_00307
+MTPLPRFAARTAVTTAALALLAPAV-ALPSQASPAGDSLVINEAYTNGGSANAVYTHKFVELYNPTDQPINLDGWSLQYR
+SAAGTAATQGTVALSGTVPAKGHFLVSGGSNGTAGAALPQADLVAGGAFNPAGTKGTIVLARQAGTVTDLPVGSVVTGQV
+PGVADVLGYGATNTFETAAAGAPSANSDPKSLTRTNGVDTDDNSADFTVTGQVTPTNAAA--TGG-EPTPEPEPQPTPSE
+RITIAQLQGTGTATPYAGRQVTTTGVVTAVYSTGGYDGYYIQTAGTGGDTPDATPGASDGVFVYSPDTVGSVTLGDHVQV
+TGEAAEHYGLTQIKVAADGVLPVAEPGA-VAPTPVEFPLEEADREALEGMVLAPQGDWTVTDNYSLNQYGSLGVVPGTKP
+LDNPTSVARPGAEAQAVAAANAQQLIVLDDGASTNFMRSPGNQNPLPYLDADQPVRVGAGLEFSTGVILDWRFDAWSFQP
+LGHLTDATAAAVQPVTIEDTRPAEAAPEAVGGNVTVGSFNVLNYFTTLGQDVAGCGAYRDRAGTPVTTNGCLPRGAYTPE
+AFARQQEKIAAAINGLGTSVVALEEIENSEKFGLDRDHALAHLVEALNAQAGEQRWAYVASPSARPALADEDVIRSAFIY
+QPAEVTPLGESVILDDQTNFDNAREPMAQLFRAADGTAEGAAGTEFVAITNHFKSKGGSGATGDNVDAGDGQGAYNADRV
+GQAEALVAFAERMKAETGTDRVLLMGDFNAYEKEDPIRVLEAAGYVSQGALTGEYSYAFGGAVGSLDGIYASPSAAAAIT
+GQDIWMINANESVALEYSRHNYVAEDLYSADQWRSSDHNPILVGLQLDAPVTEPTPEPEPEPT-PGETCDGVTDPRGVPG
+KPANSVREWLRCIGATPGHGGDHPGKGHGGD----HPGKGRGP--VRP
+>KD337_NAFOICDF_00026
+MPTPRLRLVRTAATLAAATLLAPAVLALPAQASPAGDSLVINEAYTNGGSAGALFTHKFVELYNPTDQPISLDGWSLQYR
+SATGTTAPSTTVALSGTVPAKGHFLIQGGSNGATGAALPTPDLTT--SFNPAGTKGTIVLADQAGTVAGLPTGSVVTDQV
+AGVADVLGYGATNTFETAASGAPAANSDPKSIARTGGADTDDNAADFTVAADVTPQNAAGGGTAPVDPVDPVDPTPAPAP
+SVTVAEIQGTGATSPLEGRRVSTTGVVTAVYSTGGYDGFYIQTAGTGG-AEDATPGASDGVFVYAPAEVGSVTLGQTVTV
+TGDVAEYYGLTQVKAEAGGVRQAAEAGAPVTARELAFPLTEAEKEAHEGELLAPAGAWTVTDNYDVNQYGSLGLAPGTSP
+LPNPTSVALPGADAQAVAADNAQRLIVLDDGASTNFFRSPGNQNALPYIDADAPARVGSAVDFRTPVILDYRYGAWSFQP
+LGHLTDANKAEVQPVDIADTRPAEAVREDLGGNVTVGSFNVLNYFTTLGEDVPGCGYYADKDGAPVSTKGCLPRGAYTEE
+AFLEQQAKIATAINGMDTSVVALEEIENSEKFGLDRDHALAHLVDALNAQAGYAKWAYVASPTVRPALADEDVIRSAFIY
+QPAEVTPVGESVILDDQVNFANAREPMAQAFRVADGSAGGVVGTEFVAITNHFKSKGGSGATGDNVDTGDGQGAYNGDRT
+RMAQALVAFAEQMKVQAGTDRVLLMGDFNSYEKEDPIRVLEAAGYISQGAKTGEYSYTFDGAVGSLDGIYASPAADATVT
+GQDIWMINANESVAFEYSRDNYVGEEFYAPDQWRSSDHNPVLVGLQLDAPAAPVVPTPGTRPTPPADQCALITSPRGAKA
+SAGFSASEWMRCAGV--------------------HPGKGRG----RG
+>SA211_MHAAABBN_00022
+MTPLPRFAARTAVTTAALALLAPAV-ALPSQASPAGDSLVINEAYTNGGSANAVYTHKFVELYNPTDQPINLDGWSLQYR
+SAAGTAATQGTVALSGTVPAKGHFLVSGGSNGTAGAALPQADLVAGGAFNPAGTKGTIVLARQAGTVTDLPVGSVVTGQV
+PGVADVLGYGATNTFETAAAGAPSANSDPKSLTRTNGVDTDDNSADFTVTDQVTPTNAAA--TGG-EPTPEPEPQPTPAE
+RITIAQLQGTGTATPYAGRQVTTTGVVTAVYSTGGYDGYYIQTAGTGGDTPDATPGASDGVFVYSPDTVGSVTLGDHVQV
+TGEAAEHYGLTQIKVAAGGVLPVAEPGA-VAPTPVEFPLEEADREALEGMVLAPQGDWTVTDNYSLNQYGSLGIVPGTTP
+LDNPTSVARPGAEAQAVAAANAQQLIVLDDGATTNFMRSPGNQNPLPYLDADQPVRVGAGLEFTTGVILDWRFDAWSFQP
+LGHLTDATAAAVQPVTIEDTRPAEAAPEAVGGNVTVGSFNVLNYFTTLGQDVAGCSAYRDRAGTPVTTNGCLPRGAYTSE
+AFARQQEKIAAAINGLGTSVVALEEIENSEKFGLDRDHALAHLVEALNAQAGEQRWAYVASPATRPALADEDVIRSAFIY
+QPAEVTPVGESVILDDQTNFDNAREPMAQLFRAADGTSEGAAGTDFVAITNHFKSKGGSGATGDNVDAGDGQGAYNADRV
+GQAEALVAFAERMKAETGTDRVLLMGDFNAYEKEDPIRVLEAAGYLSQGALTGEYSYAFGGAVGSLDGIYASPSAATAIT
+GQDIWMINANESVALEYSRHNYVAEDLYSADQWRSSDHNPILVGLQLDAPVTEPT--PEPEPS-PGETCDGVTDPRGVPG
+KPANSVREWLRCVGATPGHGGDHPGKGHGPE----HPGKGRGP--VRP
+>TT9_LFPAFLNI_00314
+MTPLPRFAARTAVTTAALALLAPAV-ALPSQASPAGDSLVINEAYTNGGSANAVYTHKFVELYNPTDQPINLDGWSLQYR
+SAAGTAATQGTVALSGTVPAKGHFLVSGGSNGTAGAALPQADLVAGGAFNPAGTKGTIVLARQAGTVTDLPVGSVVTGQV
+PGVADVLGYGATNTFETAAAGAPSANSDPKSLTRTNGVDTDDNSADFTVTDQVTPTNAAA--TGG-EPTPEPEPQPTPAE
+RITIAQLQGTGTATPYAGRQVTTTGVVTAVYSTGGYDGYYIQTAGTGGDTPDATPGASDGVFVYSPDTVGSVTLGDHVQV
+TGEAAEHYGLTQIKVAAGGVLPVAEPGA-VAPTPVEFPLEEADREALEGMVLAPQGDWTVTDNYSLNQYGSLGIVPGTTP
+LDNPTSVARPGAEAQAVAAANAQQLIVLDDGATTNFMRSPGNQNPLPYLDADQPVRVGAGLEFTTGVILDWRFDAWSFQP
+LGHLTDATAAAVQPVTIEDTRPAEAAPEAVGGNVTVGSFNVLNYFTTLGQDVAGCSAYRDRAGNPVTTNGCLPRGAYTSE
+AFARQQEKIAAAINGLGTSVVALEEIENSEKFGLDRDHALAHLVEALNAQAGEQRWAYVASPATRPALADEDVIRSAFIY
+QPAEVTPVGESVILDDQTNFDNAREPMAQLFRAADGTSEGAAGTDFVAITNHFKSKGGSGATGDNVDAGDGQGAYNADRV
+GQAEALVAFAERMKAETGTDRVLLMGDFNAYEKEDPIRVLEAAGYLSQGALTGEYSYAFGGAVGSLDGIYASPSAATAIT
+GQDIWMINANESVALEYSRHNYVAEDLYSADQWRSSDHNPILVGLQLDAPVTEPT--PEPEPS-PGETCDGVTDPRGVPG
+KPANSVREWLRCVGATPGHGGDHPGKGHGPE----HPGKGRGP--VRP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000194.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000194.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fbdec724b7ce9b51dcfc317b75896b804b5421a5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000194.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00032
+MDRNMLDQLQNANVFATDGDKIGSVGQVYLDDVTNEPTFVTVKTGLFGARETFVPLQQAQ
+TTADGITVPFDKAFVKDAPNVDADGSLTPEEEQRIYEYYSMEYS------NVD-HDRDVR
+HDDGLRADAGTAGVAGTAGVAGVADRREDTVVDGDRRDVVDGDRRDLVDADRRDVVDGDR
+DSMVVKDEHLQVGTERQATGRVRLRKQAYTTTETVEVPVTREEVVVERESVDPNSAEART
+AGRDGDIEVTTYEETPVVNKTVEAEKVSLGKRQVQDTETVSEELRHEDVKIDGDATDRDL
+DGRTDRKDRI
+>KBS0714_MOLHKGIG_00305
+MDRNALDQLQNSTVFATDGDKIGSVGQVYLDDVTNEPTFVTVKTGLFGARETFVPLQQAQ
+ITADGITVPFEKSFVKDAPNVDADGSLTPEEEQRIYEYYSMEYSYSVEHPAAD-HDGDVR
+RDD-VRTDAGTAGVAGTAGVAGVADRRDEAVVDGDRRDVADRDRRDVT----------DA
+DSVVVKDEHLNVGTERRASGRVRLRKQAYTTTETVEVPVTREEVVVERESVDPNSAEART
+AGRDGDVEVTTYEETPVVNKTVDAEKVSLGKRQVQDTETVTEEVRHEDVKVDGDATDRDL
+DGRNDRKDRI
+>KD337_NAFOICDF_00028
+MDRNALDQLQNGHVFSTDGEKIGSVGQVYLDDVTNEPTFVTVKTGLFGAKETFVPLQQAQ
+TTTDGITVPFTKDFVKDAPNVDADGSLTPEEEQRIYEYYSMDYS------AVDTHD----
+RRD-VR-DAAAAGTAGGV----VTDRERRDVVDADRRDVVDNDRRDLV--------DGDA
+DSVVVKDEKLNVGTERRATGRVRLRKQSYTTTETVEVPVTREEVVVERESVDPNSAEART
+AGRDGDIEVTTYEETPVVNKTVEAEKVSLGKRTVQDTETVSEELTHEDVKIDGD----DV
+DGR-----RR
+>SA211_MHAAABBN_00020
+MDRNALDQLQNSTVFATDGDKIGSVGQVYLDDVTNEPTFVTVKTGLFGARETFVPLQQAQ
+TTADGITVPFEKSFVKDAPNVDADGSLTPEEEQRIYEYYSMEYS------AAD-HDGDVR
+RDD-VRTDAGAAGVAGTAGVAGVADRRDEAVVDGDRRDVADRDRREVT----------DA
+DSVVVKDEHLNVGTERRASGRVRLRKQAYTTTETVEVPVTREEVVVERESVDPNSAEART
+AGRDGDVEVTTYEETPVVNKTVDAEKVSLGKRQVQDTETVTEEVRHEDVKVDGDATDRDL
+DGRNDRKDRI
+>TT9_LFPAFLNI_00312
+MDRNALDQLQNSTVFATDGDKIGSVGQVYLDDVTNEPTFVTVKTGLFGARETFVPLQQAQ
+TTADGITVPFEKSFVKDAPNVDADGSLTPEEEQRIYEYYSMEYS------AAD-HDGDVR
+RDD-VRTDAGAAGVAGTAGVAGVADRRDEAVVDGDRRDVADRDRREVT----------DA
+DSVVVKDEHLNVGTERRASGRVRLRKQAYTTTETVEVPVTREEVVVERESVDPNSAEART
+AGRDGDVEVTTYEETPVVNKTVDAEKVSLGKRQVQDTETVTEEVRHEDVKVDGDATDRDL
+DGRNDRKDRI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000195.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000195.fa
new file mode 100644
index 0000000000000000000000000000000000000000..38f5b40af69cd93d3be12a5c855867550416a192
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000195.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00051
+MEYLVPVLAVVLIGALAFAVSRWMSAARDRQTAGPRTPSGRPLEI---GPERARQAAALL
+DEDAHRRVYGHIAQSRVMEAVRDYRAHTGRSLKDAVMDVQSLAVHPQVYSVPATEQEAPE
+EAEVRDPRTRPTPP---EPARDEAADGERQGTERADVVEEGADDPAADDEPRPEAESDLS
+AEEGRVDDGAASGTEPRPGTSEPARADELTALTVPADWSAAPAEEEPPFEVEVMRGMDSV
+RLSSQDLPPWLRDQLSAMVRDGNLESAAVQLSSHSQLSVPEAYELLRRMRERR-GED
+>KBS0714_MOLHKGIG_00303
+MEYLVPVLAVVVIGALAFAAARWMSAGRARQAADQRTPSGRGLDI---GPERARLAAGLL
+DEDAHRRVYGHIAQSRVMEAVRDYRAHTGRGLKDAVMDVQSLAVHPQVYSEPAQEPDATS
+AGA-----AGPVPADHEEPHRDDTAPAETPGPERPGQDSSGRGEPDAQTPDR--EPSDAV
+AEDDARQDTDHASAAPRPTATP---ADELTTLTVPAEWTAAPAEEELPFEVEVMRGTESV
+RLSSRDLPPWLRDQLSAMVRDGNLESAAVQLSSHSELSVPEAYELLRRMREHR-GEG
+>KD337_NAFOICDF_00030
+MEYLVPILAVVVIGGITLLVARRLS---GRSQAPTRSATGTGADTVEASPERARTAARRL
+DEATHRAVYGHIAQGRPFEAVRDYRRATGRGVRDAILDIQSLTLHPQVWSLPVQAEPADD
+ASPAAADMPSGPPR---GPSDGRGRDGESSARPRLRRAEPSEAGPAPDAEPAP-------
+GGDAAADPEADGATSRRPGRQA---PEELTTLTVPEGWTADPAPEEPPFEVEVMRGEESV
+RLASQDLPPWLRDQLSAMVRDGNLESAAVQLSSHSSLSVPEAFELLRRMKERREGRG
+>SA211_MHAAABBN_00011
+MEYLVPVLAVVVIGALAFAAARWMSAGRARQAADQRTPSGRGLDI---GPERARLAAGLL
+DEDAHRRVYGHIAQSRVMEAVRDYRAHTGRGLKDAVMDVQSLAVHPQVYSEPVQEPDATS
+AGV-----AGPVPGGHGEPHRDDAAPADTPGPKRPGQDSSGRGEPDAQTPDR--ETSDAV
+AEDDARQDSDHASAAPRPTAPS---ADELTTLTVPAEWTAAPAEEELPFEVEVMRGTESV
+RLSSRDLPPWLRDQLAAMVRDGNLESAAVQLSSHSELSVPEAYELLRRMRERR-GEG
+>TT9_LFPAFLNI_00310
+MEYLVPVLAVVVIGALAFAAARWMSAGRARQAADQRTPSGRGLDI---GPERARLAAGLL
+DEDAHRRVYGHIAQSRVMEAVRDYRAHTGRGLKDAVMDVQSLAVHPQVYSEPVQEPDATS
+AGV-----AGPVPDDHGEPHRDDAAPAETPGPKRPGQDSSGRGEPDAQTPDR--EPSDAV
+AEDDAQQDTDHASAAPRPTATP---ADELTTLTVPAEWTAAPAEEELPFEVEVMRGTDSV
+RLSSQDLPPWLRDQLSAMVRDGNLESAAVQLSSHSELSVPEAYELLRRMRERR-GEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000196.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000196.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f708010d352224d97715f1850220af9276a907f6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000196.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_00053
+MPPQ--PPPAGPPAVPPSGPAPLAPGDPAYRRLLIGLFLAGVATFAQLYSPQGLLPLVSA
+DLGVGAHRAALLVSAGTLGLALSVVPWSMAGDRWGRRRAMVVSMVSASLFALAGVLAPTF
+EAMLGLRLLEGMAHGGVAGLAVALLAEEVAPRAVATAAGTYIAGTTIGGLSGRLIALPVA
+EAFTWRTGMLAVTVVGVACTAAFLAVTPQARRFTPSPTSVARLVRIVRGHLGSAELVAVY
+LQAALLMGGFVALYNFVGYRLLGPPFSWAPTAAGLVFLAYLAGTWSSPRAGRLAARFGRL
+PVLTGATAAMAAGAALTLVPHPAVLVGALVLTTGAFFAAHSVASAWSGTAAPHGRAQSTS
+LYNLAYYAGSSLFGWLGGVFHESHGWTGTVLMVVALALTALAIAVVVLRGRGTA-PARCA
+GAVRGAGRRGIRRISRGRLRRRRWPSGAGRARPRGPRGPAARASRPSAGRSRSRCPARRT
+PPAWSAPRPG
+>KBS0714_MOLHKGIG_00301
+MPPTTPPPPAGPPAVPPSGPAPAAPGEAAYRRLLIGLFLAGVATFAQLYSPQGLLPLVSD
+DLGVPADRAALLVSASTLGLALSVVPWSVAGDRWGRRRAMVVSMVSASACALAGVLAPTF
+EAMLRLRLLEGMAHGGVAGLAVALLAEEVAPHAVAAAAGTYIAGTTLGGLSGRLLALPVA
+EASSWRGGMLAVTVVGVLCTVGFLAITPRARRFTPSPTSPATLVRIVRGHLRSPELVAVY
+LQGALLMGGFVALYNFVGYRLLGPPFSWTPTAAGLVFLAYLAGTWSSPRAGRLAARVGRL
+PVLAGATAAMAAGVALTSVPHPAVLVPALVLVTGAFFAAHAVASAWSGTAAPTGRAQSTS
+LYNFAYYAGSSLFGWLGGVFHESHGWPGTVLMVLALVLTALASAVVVLRGRGTA-PAR--
+------------------------------------------------------------
+----------
+>KD337_NAFOICDF_00031
+--------------MPPALPAPLEPGTPLYRRLLLGLFLAGVATFAQLYAPQGLLPLVSS
+DLGVPSHRAALLVSAGTLGLALSVVPWSLAGDRWGRRPVMVASLVSASVLALVGVFMPSI
+ELLMGMRLLEGMAHGGVAGLAVTLLAEEVAPRVVPVAAGTYVAGTTLGGLSGRLLAMPVG
+EWAGWRAGMLAVTAAGAACTVAFLFVTPPARRSTPVRLSLARLGRIIGGHLRTPGLVALY
+LQAALLMGGFVALYNYIGYTLLAPPFGWPPTAVGLVFLAYLAGTWSSPRAGRLAVRVGRL
+KVLTGSTALMAVGVVLTLVPSPFVLVPALVVATGAFFAAHSVASGWAGTAAPTGRAQSTS
+LYNLAYYAGSSLFGWLGGVFHEGVGWAGTVFMVAGLAAVALVVALVVLRGREDAGPPPPS
+AVAEGAAA----------------------------------------------------
+----------
+>SA211_MHAAABBN_00009
+MPPTTPPPSAGPPAVPPSGPAPAAPGEPAYRRLLIGLFLAGVATFAQLYSPQGLLPLVSD
+DLGVPADRAALLVSASTLGLAVSVVPWSVAGDRWGRRRAMVVSMVSASACALTGVLAPTF
+EAMLGLRLLEGMAHGGVAGLAVALLAEEVVPHAVAAAAGTYIAGTTLGGLSGRLLALPVA
+EASSWRGGMLTVTVVGVLCTVGFLAITPRARRFTPSPTSPATLVRIVRGHLRSPELVAVY
+LQGALLMGGFVALYNFVGYRLLDPPFSWTPTAAGLVFLAYLAGTWSSPRAGRLAARVGRL
+PVLAGATAAMAAGVALTSVPHPAVLVPALVLVTGAFFAAHAVASAWSGTAAPTGRAQSTS
+LYNFAYYAGSSLFGWLGGVFHESHGWPGTVLMVLALVLTALVSAVVVLRGRGTA-PAR--
+------------------------------------------------------------
+----------
+>TT9_LFPAFLNI_00308
+MPPTTPPPSAGPPAVPPSGPAPAAPGEPAYRRLLIGLFLAGVATFAQLYSPQGLLPLVSD
+DLGVPADRAALLVSASTLGLAVSVVPWSVAGDRWGRRRAMVVSMVSASACALTGVLAPTF
+EAMLGLRLLEGMAHGGVAGLAVALLAEEVAPHAVAAAAGTYIAGTTLGGLSGRLLALPVA
+EASSWRGGMLAVTVVGVLCTVGFLAITPRARRFTPSPTSAAALVRIVRGHLSSPELVVVY
+LQGALLMGGFVALYNFVGYRLLDPPFSWTPTAAGLVFLAYLAGTWSSPRAGRLAARVGRL
+PVLAGATAAMAAGVALTSVPHPAVLVPALVLVTGAFFAAHAVASAWSGTAAPTGRAQSTS
+LYNFAYYAGSSLFGWLGGVFHESHGWPGTVLMVLALVLTALASAVVVLRGRGTA-PAR--
+------------------------------------------------------------
+----------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000197.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000197.fa
new file mode 100644
index 0000000000000000000000000000000000000000..feecafc52aa1bdd1b882335810a657f664bfa84b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000197.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00054
+------------MTTSTSSLDLHESFKAYDVRGIVGETITADSVRAVGAAFVDVLGLAGETVLVGGDMRPSSPAFMAAFA
+EGATRRGADVVDLGLISTDMLYYAAGVKQAAGVVFTASHNPAEYNGMKMAKAGAVPVSSDTGLYEIRDAAQALLDAGEIP
+AAEAVGTVTQQDILPAYAEYLRSLVDLSGVRPLTVVVDAGNGMAGKTTPAVLGDAALDALPLRIEPLYFELDGTFPNHPA
+NPLEPENLRDLQAAVVEHGADIGLAFDGDADRCFVVDEKGAPVSPSAITALVARREIARAKGEGEETPVVIHNLITSRAV
+PELVAADGGRAVVTRVGHSFIKAVMAEESAVFGGEHSAHYYFRDFFNADTGMLAAMHVLAALGEQDQPLSELAEEYEPYV
+ASGEINSQVADKDAAVAAVVAQFAPTVGEGAGEGRAVHEDFAGVDTAVTRMDGTTVAAQDGTWWFNLRPSNTEPFLRYNG
+EARTAATMEAIRDAVLAIVRAER
+>KBS0714_MOLHKGIG_00300
+------------MTTSTPSLDLHDSFKAYDVRGIVGESITAESVRAVGAAFVDVLGLAGQTVLVGGDMRPSSPAFMTAFA
+EGATRRGADVVTLGLISTDMLYYAAGVKQAAGVVFTASHNPAEYNGMKMAQAGAVPVSSDTGLFEIRDAAQAYLDAGEIP
+AAETAGTVTEEDILPGYAAYLRSLVDLTGVRRLKVVVDAGNGMAGKTTPAVLGDAELAALPLEIEPLYFELDGTFPNHPA
+NPLEPENLRDLQAAVVEHGADIGLAFDGDADRCFVIDEQGAPVSPSAITALVARREIARAKADGEQTPVVIHNLITSRAV
+PELVAADGGRAVETRVGHSFIKAVMAAESAVFGGEHSAHYYFRDFFNADTGMLAAMHVLAALGGQEQPLSELAEEYEPYV
+ASGEINSQVADKDAAVAAVVAQFAPAVGEGVGEGQAVHEDFAGVATTVTRMDGTTVAAQDGTWWFNLRPSNTEPFLRYNG
+EARTAATMEALRDAVLAIVRAER
+>KD337_NAFOICDF_00032
+MVTLRPGRIIDRVTTAADAINLRDSFKAYDVRGIVGETITAETVRAVGAAFVDVLGLAGQTVLVGGDMRPSSPEFIEAFA
+EGATRRGGNVQRIGLISTDMLYYAAGVEQAAGVMFTASHNPAAYNGMKMAKAGAVPVSSDTGLYEIRDVAQGYLDAGEIP
+AADAQGSVTESDILTGYAEYLRSLVDLSGIRPLKVVVDAGNGMAGKTTPAVLGGEVLEALPLEITPLFFELDGTFPNHPA
+NPLEPENLRDLQRAVVEHGADIGLAFDGDADRCFVIDEQGEPVSPSAVTALVARREIARAKASGEETPVIIHNLITSRAV
+PELVSADGGRAVQTRVGHSFIKAVMASEGAVFGGEHSAHYYFRDFFNADTGMLAAMHVLAALGEQDGPLSTLGAEYEPYV
+ASGEINSQVEDKDAAVAAVLARFAPQAADGGESGTAVEDAVAGTSTSVLRMDGTTVSAADGSWWFNLRPSNTEPFLRYNG
+EAKDRATMETVRDAVLAIVRAPR
+>SA211_MHAAABBN_00008
+------------MTTSTPSLDLHDSFKAYDVRGIVGESITAESVRAVGAAFVDVLGLAGQTVLVGGDMRPSSPAFMTAFA
+EGATRRGADVVTLGLISTDMLYYAAGVKQAAGVVFTASHNPAEYNGMKMAQAGAVPVSSDTGLFEIRDAAQAYLDAGEIP
+AAETAGTVTEEDILPGYAAYLRSLVDLTGVRRLKVVVDAGNGMAGKTTPAVLGDAELAALPLEIEPLYFELDGTFPNHPA
+NPLEPENLRDLQAAVVEHGADIGLAFDGDADRCFVIDEQGAPVSPSAITALVARREIARAKADGEQTPVVIHNLITSRAV
+PELVAADGGRAVETRVGHSFIKAVMAAESAVFGGEHSAHYYFRDFFNADTGMLAAMHVLAALGGQEQPLSELAEEYEPYV
+ASGEINSQVADKDAAVAAVVAQFAPAVGEGAGEGRAVHEDFAGVATTVTRMDGTTIAAQDGTWWFNLRPSNTEPFLRYNG
+EARTAATMEALRDAVLAIVRAER
+>TT9_LFPAFLNI_00307
+------------MTTSTPSLDLHDSFKAYDVRGIVGESITAESVRAVGAAFVDVLGLAGQTVLVGGDMRPSSPAFMTAFA
+EGATRRGADVVTLGLISTDMLYYAAGVKQASGVVFTASHNPAEYNGMKMAQAGAVPVSSDTGLFEIRDAAQAYLDAGEIP
+AAETTGTVTEEDILPGYAAYLRSLVDLTGVRRLKVVVDAGNGMAGKTTPAVLGDAELAALPLEIEPLYFELDGTFPNHPA
+NPLEPENLRDLQAAVVEHGADIGLAFDGDADRCFVIDEQGAPVSPSAVTALVARREIARAKADGEQTPVVIHNLITSRAV
+PELVAADGGRAVETRVGHSFIKAVMAAESAVFGGEHSAHYYFRDFFNADTGMLAAMHVLAALGGQEQPLSELAEEYEPYV
+ASGEINSQVEDKDAAVAAVVAQFAPAVGEGVGEGQAVHEDFAGVATTVTRMDGTTVAAQDGTWWFNLRPSNTEPFLRYNG
+EARTAATMEALRDAVLAIVRAER
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000198.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000198.fa
new file mode 100644
index 0000000000000000000000000000000000000000..89df6e3b02ac34fb94eabfac1a6c5fada4ec687e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000198.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00055
+MDTTQHPDAGPLPSESTAPIGPYGSGAAAPGAAAAREPELHAEALAVLRRLVDRPDAQFKDGQFEAIEALVAHRRRALVV
+QRTGWGKSAVYFVASLLLRARGAGPTLIVSPLLALMRDQVAAAARAGVRAVSVSSANATQWDEVRARLAADEVDVLLISP
+ERLTNPRFREEQLPDLVARMGLLVVDEAHCISDWGHDFRPDYRRIRDLIGLLPSTGPRAVPVLATTATANARVVGDVVEQ
+LGVDSAQDVFVLRGSLARASLRLGVLRMPSPAARLAWLLDHLEDLPGSGIVYALTVSAAEDTARALREAGHEAVAYTGRT
+DPERRAEIEEDLKANRVKAVVATSALGMGFDKPDLTFVVHFGAPSSPVAYYQQVGRAGRGTDHADVLLLPGPEDRRIWEY
+FATASMPDEEQARAVLQALAQHGGALSVAALEPAVRIKRTALELLLKVLAVDGAVERVGGGWRATGREWVYDAQRYARVA
+EARRAEERLMLDYQTTDTCRMEFLARTLDDPTAAPCGRCDVCAGPWYPTGSDTSARERAEAALRRTGVPIEPRRMWPSGM
+DRLGVPVKGRMAPEIQAEEGRALARLTDLGWGTVLRELLDKEDAPVPEDVLQGAVGVLAGWGWQTRPIAVVAMPSRTRPL
+LVGSFAEGIARIGRLPFLGSLEHARGGPTAGPGGNSAYRLGSVHGRFEVPEAMAHLLRTASDAGRHGPVLLVDDLVDSRW
+SLAEASRVLREAGAQGVLPLVLAQAG
+>KBS0714_MOLHKGIG_00299
+MDATSHPDAGPRLPETSVPGG---------------DAALHEEALAVLRRLVDRPDARFKDGQFEAIEALVAHRRRALVV
+QRTGWGKSAVYFVASLLLRARGAGPTLIVSPLLALMRDQVAAAARAGVRAVSVSSANATEWDEVRARLAADEVDVLLISP
+ERLTNPRFRDEQLPDLVARMGLLVVDEAHCISDWGHDFRPDYRRIRDLIGLLPAEGPRAVPVLATTATANARVVADVVEQ
+LGVASEQDVFVLRGPLARASLRLGVLRMPSPAARLAWLLDHLGDLPGSGIVYALTVSAAEDTARALREAGHEVVAYTGRT
+DPERRAEIEEDLKANRVKAVVATSALGMGFDKPDLTFVVHFGAPGSPVAYYQQVGRAGRGTDHADVLLLPGPEDRRIWEY
+FATASMPDEEQARAVLGALADHGGALSVAALEPAVRIKRTALELLLKVLAVDGAVERVGGGWRATGREWTYDAERYARVA
+EARRAEERLMLDYQTTDRCRMEFLARTLDDPTAAPCGRCDVCAGPWYPTGSDGAARERAEAALRRTGVPIEPRRMWPSGM
+DRLGVPVKGRIAPESQAEEGRALARLTDLGWGTVLRDLLDREDAPVPEEVLRGAVDVLAGWGWRTRPIAVVAMPSRTRPQ
+LVGSFAEGIARIGRLPFLGSLEHARGGPTAGPGGNSAYRLGSVYGRFAVPEAMAQMLRTAPDAGRHGPVLLVDDLVDSRW
+SLAEAARVLREAGAQGVLPLVLAQAG
+>KD337_NAFOICDF_00033
+M------STSPQDPARPAAVA---------------DPALYAEALGVLRALVGRPDAEFKDGQYEAVEALVAHRRRALVV
+QRTGWGKSAVYFVASLLLRARGAGPTLIVSPLLALMRDQVAAAARAGVRAASLSSANATEWEDVRRSLEADEVDVLLISP
+ERLTNPRFRDEQLPDLVSRMGLLVVDEAHCISDWGHDFRPDYRRIRDLIRLLPSSGPRAVPVLATTATANARVVQDVVEQ
+LDVESRQDVFVLRGPLARASLRLGVLRLPSPAARLAWLLQHLGELPGSGIVYALTVSAAEDTARALREAGHEVVAYTGRT
+DPEQRARIEQDLKDNRVKAVIATSALGMGFDKPDLTFVVHLGAPSSPVAYYQQVGRAGRGTDHADVLLLPGQEDRAIWEY
+FATASMPDEVQARAVLEALEESGGAMSVAALEPVVSVKRTALELLLKVLSVDGAVERVGGGWRATGSPWTYDAERYARVA
+EARRAEERLMLDYQTTQTCRMEFLARTLDDPTAAPCGRCDVCAGPWYPTGWDGAAREQADRALRRTGVPLEPRRMWPSGM
+DRLHVPVKGRISPAEQAEEGRALARLTDLGWGSRLRELLAAPDAPVPEEVLQAAVRVLAEWGWQERPIAVVAMPSRGRPQ
+LVDSLARGLAGQGRLPFLGPLELVGGGPTAGPGGNSAYRLASVHGRFAVPEGMARMLATAPDAGRHGPVLLVDDLADSRW
+SLAEAARVLRGTGAQGVLPFVLAQNG
+>SA211_MHAAABBN_00007
+MDATSHPDAGPRLPETSAPGG---------------DAALHEEALAVLRRLVDRPDARFKDGQFEAIEALVAHRRRALVV
+QRTGWGKSAVYFVASLLLRARDAGPTLIVSPLLALMRDQVAAAARAGVRAVSVSSANATEWDEVRARLAADEVDVLLISP
+ERLTNPRFRDEQLPGLVARMGLLVVDEAHCISDWGHDFRPDYRRIRDLIGLLPAEGPRAVPVLATTATANARVVADVVEQ
+LGVASEQDVFVLRGPLARASLRLGVLRMPSPAARLAWLLDHLADLPGSGIVYALTVSAAEDTARALREAGHEVVAYTGRT
+DPERRAEIEEDLKANRVKAVVATSALGMGFDKPDLTFVVHFGAPGSPVAYYQQVGRAGRGTDHADVLLLPGPEDRRIWEY
+FATASMPDEEQARAVLGALADHGGALSVAALEPAVRIKRTSLELLLKVLAVDGAVERVGGGWRATGREWTYDAERYARVA
+EARRAEERLMLDYQTTDRCRMEFLARTLDDPTAAPCGRCDVCAGPWYPTGSDGAARERAEAALRRTGVPIEPRRMWPSGM
+DRLGVPVKGRIAPESQAEEGRALARLTDLGWGTVLRDLLDREDAPVPEEVLRGAVDVLAGWGWRTRPIAVVAMPSRTRPQ
+LVGSFAEGIARIGRLPFLGSLEHARGGPTAGPGGNSAYRLGSVYGRFAVPEAMAQMLRTAPDAGRHGPVLLVDDLVDSRW
+SLAEAARVLREAGAQGVLPLVLAQAG
+>TT9_LFPAFLNI_00306
+MDATSHPDAGPRLPETSAPGG---------------DAALHEEALAVLRRLVDRPDARFKDGQFEAIEALVAHRRRALVV
+QRTGWGKSAVYFVASLLLRARGAGPTLIVSPLLALMRDQVAAAARAGVRAVSVSSANATEWDEVRARLAADEVDVLLISP
+ERLTNPRFRDEQLPDLVARMGLLVVDEAHCISDWGHDFRPDYRRIRDLIGLLPAEGPRAVPVLATTATANARVVADVVEQ
+LGVASEQDVFVLRGPLARASLRLGVLHLPSPAARLAWLLDHLGDLPGSGIVYALTVSAAEDTARALREAGHEVVAYTGRT
+DPERRAEIEEDLKANRVKAVVATSALGMGFDKPDLTFVVHLGAPGSPVAYYQQVGRAGRGTDHADVLLLPGPEDRRIWEY
+FATASMPDEEQARAVLGALADHGGALSVAALEPDVRIKRTSLELLLKVLAVDGAVERVGGGWRATGREWTYDAERYARVA
+EARRAEERLMLDYQTTDRCRMEFLARTLDDPTAAPCGRCDVCAGPWYPTGSDGAARERAEAALRRTGVPIEPRRMWPSGM
+DRLGVPVKGRIAPESQAEEGRALARLTDLGWGTVLRDLLDREDAPVPEEVLRGAVDVLAGWGWRTRPIAVVAMPSRTRPQ
+LVGSFAEGIARIGRLPFLGSLEHARGGPTAGPGGNSAYRLGSVYGRFAVPEAMAQMLRTAPDAGRHGPVLLVDDLVDSRW
+SLAEAARVLREAGAQGVLPLVLAQAG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000201.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000201.fa
new file mode 100644
index 0000000000000000000000000000000000000000..eb3f411d4a587134ceed3bb5c158d3b68643ed66
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000201.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00060
+MSTADAKTLIVLRHAKAGWPDAADDHARPLAERGHAQAPAAGDWLRENGLVPDAIVCSDA
+LRTRQTCVWVCERLGELAPTPYLDPRLYHADAAKALAIVNETEETTRSLLVVGHMPWVQN
+LGMRLMSLDSDQDAALRMSEHYPTLGMQVFRVEKPWVELDGRDAALTHFVVPGR
+>KBS0714_MOLHKGIG_00294
+MSTADAKTLIVLRHAKAGWPDAADDHARPLAERGHAQAPAAGDWLREHGLVPDAVVCSDA
+LRTRQTCVWVCERLGELAPTPYLDPRLYGADAARALAVVNETEETTRRLLVVGHMPWVQE
+LGMRLMSLDSDQDAALRMSEHYPTLGMQVFRVEKPWAELDGRDAALTHFVVPGR
+>KD337_NAFOICDF_00039
+MSPADAKTLVLLRHAKADWPAGVDDHDRPLAPRGHAQAPAAGDWLLEHGIAPEAAVVSDA
+LRTRQTWVWVAQRLGERAPTAYLDRRLYEADAARALAVVNETEETVRSLIVVGHMPWLQN
+LGMRLMSLDSDQDAALEMAEHLPTLGLQVFRVDTPWAELDGRDAALTHFAVPGR
+>SA211_MHAAABBN_00002
+MSTADAKTLIVLRHAKAGWPDAADDHARPLAERGHAQAPAAGDWLREHDLVPDAVVCSDA
+LRTRQTCVWVCERLGELAPTPYLDPRLYGADAARALAVVNETEETTRRLLVVGHMPWVQE
+LGMRLMSLDSDQDAALRMSEHYPTLGMQVFRVEKPWAELDGRDAALTHFVVPGR
+>TT9_LFPAFLNI_00301
+MSTADAKTLIVLRHAKAGWPDAADDHARPLAERGHAQAPTAGDWLREHDLVPDAVVCSDA
+LRTRQTCVWVCERLGELAPTPYLDPRLYGADAARALAVVNETEETTRRLLVVGHMPWVQE
+LGMRLMSLDSDQDAALRMSEHYPTLGMQVFRVEKPWAELDGRDAALTHFVVPGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000202.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000202.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b236f4785e65ea8d357d60c86eb91421690ee8b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000202.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00061
+MGQSAGYVHISVRNAQRRADGMSRRGQARADLRLAGGT--DAPAAQTAPTPVLAPNGIPG
+PQAVARENEARGFVIYVGMDELAASAAGTSLTRLANELRHYVESLVPGSESHAAVALAPS
+GAEGRDLEVVRQVLGDPTVQGGAHPDLAQAPAPVSTREPGVLIDLSRREVQLDGESLNLT
+YKEFELLNYLVENGERTVGREELLEALWHNADEVPNERTIDVHIRRLRAKLGRLANTVRT
+VRGQGYRFYRHPEVVVWAAPEYSI
+>KBS0714_MOLHKGIG_00293
+MGQSAGYVHISVRNAQRRADGMSRRGQARAGLRLAGGT--DAPDSQTAPTPVLAPNGIPG
+PQAVARENEARGFVIYVGMDELAASAAGTSLTRLANELRHYVESLVPGAESHAAVALAPA
+GAEGRDIEVVRQVLGDPTVQGGTRPDLAQAPAPVSTRQPGVLIDLSRREVQLDGESLNLT
+FKEFELLNYLVENGERTVGREELLDALWRNADEVPNERTIDVHIRRLRAKLGRLANTVRT
+VRGQGYRFYRHPEVVVWAAPEYSI
+>KD337_NAFOICDF_00040
+MGETAGYVHISVRNAQRRANVSRAR---RGDLRLAGGTSHEPTPPQTAPTPVLAPSGIPG
+PQAVARENEARGFVIYVGMDELMASAAGTSLTRLANELRHYVESLVPGAESHAAVALAPA
+GAAGRDLEVVRQVLGDPTVQGAARPDLAQAPAPVSTRQPGVLIDLSRREVQLDGEALNLT
+FKEFELLNYLVENGERTVGREELLDALWKNSDEVPNERTIDVHIRRLRAKLGRLANTVRT
+VRGQGYRFYRHPEVVVWAAPEYSI
+>SA211_MHAAABBN_00001
+MGQSAGYVHISVRNAQRRADGMSRRGQARAGLRLAGGT--DAPDSQTAPTPVLAPNGIPG
+PQAVARENEARGFVIYVGMDELAASAAGTSLTRLANELRHYVESLVPGAESHAAVALAPA
+GAEGRDIEVVRQVLGDPTVQGGTRPDLAQAPAPVSTRQPGVLIDLSRREVQLDGESLNLT
+FKEFELLNYLVENGERTVGREELLDALWRNADEVPNERTIDVHIRRLRAKLGRLANTVRT
+VRGQGYRFYRHPEVVVWAAPEYSI
+>TT9_LFPAFLNI_00300
+MGQSAGYVHISVRNAQRRADGMSRRGQARAGLRLAGGT--DAPDSQTAPTPVLAPNGIPG
+PQAVARENEARGFVIYVGMDELAASAAGTSLTRLANELRHYVESLVPGAESHAAVALAPA
+GAEGRDIEVVRQVLGDPTVQGGTRPDLAQAPAPVSTRQPGVLIDLSRREVQLDGESLNLT
+FKEFELLNYLVENGERTVGREELLDALWRNADEVPNERTIDVHIRRLRAKLGRLANTVRT
+VRGQGYRFYRHPEVVVWAAPEYSI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000203.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000203.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4bc795426e2b59fbe5ff40bd6273104dd5f277cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000203.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00062
+-------MRVHLVDHPLVAHKLSVLRDKKTPSMIFRQLTEELVMLLAYEATRDVAMEEVE
+IQTPVATTTGLRLARPRPLVVPILRAGLGMLEGMTKMAPSAEVGFLGMARNEETLDIVTY
+AERLPADLSGRHVFVLDPMLATGGTLIESIRFLYERGAARVTCICLLGAPEGIARLEESL
+GDVEVDLYLAAQDERLDENAYIVPGLGDAGDRLYGLAE
+>KBS0714_MOLHKGIG_00292
+MDGTVGAMRVHIVDHPLVAHKLSVLRDKKTPSMIFRQLTEELVMLLAYEATRDVAMEEVR
+IETPVTETTGFRLARPRPLVVPILRAGLGMLEGMTKMAPSAEVGFLGMARNEETLDIVTY
+AERLPADLSGRHVFVLDPMLATGGTLIEAIRFLYQRGAARVTCLCLLGAPEGIERLEASL
+GDVEVDLYLAAVDERLDERSYIVPGLGDAGDRLYGLAE
+>KD337_NAFOICDF_00041
+-------MRLHVVDHPLVAHKLTVLRDERTPSMIFRQLTEELVMLLAYEATRGVAVTEVE
+VKTPVATTVGTTLARPRPLVVPILRAGLGMLEGMTKMAPSAEVGFLGMARNEETLDIVTY
+AERLPADLTGRHVFVLDPMLATGGTLIEAIRFLYERGAERVTCLCLLGAPEGVARLEEAL
+GDVDVELYLAAVDERLNEKSYIVPGLGDAGDRLYGLAE
+>SA211_MHAAABBN_02315
+MGGTVGAMRVHIVDHPLVAHKLSVLRDKKTPSMIFRQLTEELVMLLAYEATRDVAMEEVR
+IETPVTETTGFRLARPRPLVVPILRAGLGMLEGMTKMAPSAEVGFLGMARNEETLDIVTY
+AERLPADLSGRHVFVLDPMLATGGTLIEAIRFLYQRGAARVTCLCLLGAPEGIERLEASL
+GDVEVDLYLAAVDERLDERSYIVPGLGDAGDRLYGLAE
+>TT9_LFPAFLNI_00299
+MGGTVGAMRVHIVDHPLVAHKLSVLRDKKTPSMIFRQLTEELVMLLAYEATRDVAMEEVR
+IETPVTETTGFRLARPRPLVVPILRAGLGMLEGMTKMAPSAEVGFLGMARNEETLDIVTY
+AERLPADLSGRHVFVLDPMLATGGTLIEAIRFLYQRGAARVTCLCLLGAPEGIERLEASL
+GDVEVDLYLAAVDERLDERSYIVPGLGDAGDRLYGLAE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000207.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000207.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d8df75a40ca67350b8d629a3c87d33616919860a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000207.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00069
+MPEGDSLVRLAHRLRPVLAGRALTHADLRVPQHATADLTGWTVVEVEPRGKYLLMRLTPPAGRPAARPLTLVSHLKMEGR
+WLVSALDARWGAPAWQVRAVLETADHRVLGAQLGMLTLVPTDREDTVLGHLGPDLLDPAWDGSEEAAAALLAEGTRRLTA
+RPERPVGLALLDQRTTCGIGNIYRCESLLLAGIDPHRPVGAVPDVPGLLTIARDLLRANVPPAAPFLGWPRTTTGVRANP
+DRPYGIEVVVADRGFPPGLPAAVGSGTAADPAADPGADRTASGPALGRPPARPPADPGAAGRRRTGCTGTTAPPACAAAG
+ACARRTSAPPRTTRGSCGGARPASGEPRPNRGPGGGAPYAERRPSPQGRSARPPTPRRTRVADPFPDDPRSAVVALILAG
+GRGSRLAPLTDARSKPAVPFAGQYRLIDVALTTVAHSGLQDAWIVEQYRPFTLNQHVAGGRPWDLDGTRHGLRVLPPAQG
+RDEEGFAQGNGHAIHQQLAPLRRFGAKTVVIMSADHLYRMDLRPVLERHRERDAELTVVTTQVAEGASRFGVVSSDADGR
+VTAYDYKPDEPATDVVATEVFVADVDALTEVIESLLDSASE-------EQVDDDDPAGAQLGDYGETIIPALVERGRVHE
+FRHEGYWKDVGTIDAYYQAHMALLRGDGLDLDDPRWPLISNFHPRPPAFIHPEAEVNGSMLCPGSRVRGTVTESVIGPGV
+VVEAGATVHRSVLLGSATVPAGARLDAVIADVGARIP-EGATGQTKPGPGNITVLTPDDRSTAEGDETTGHA------
+>KBS0714_MOLHKGIG_00284
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------MADPFPKDPEGAVVALVLAG
+GTGGRLMPLTAARAKPMVPLAGQYRLIDVVLSNLAHSRLRDVWVVEQYRPFTLNQHLAGGRPWDLDGTRHGLRLLPPAQG
+RAEEGFARGNGHAIAQQLPLLEQFGAETVVVLSADHLYQLDLRPVLAEHARSGAELTVVTTETDEDPSRFGVVQVDDDGA
+VTDYAYKPEDPAGTLVATEVFVFDVAALSEVVGDLVAGEDEAATKDEGETDEDGDPVGSSLGDYGESIIPAFVARGRVRE
+HRLVGYWRDIGTLDAYVRAHREILDGTGLDLAAEGWPLITNPHQAPPAWVAPDARVSGSLLSPGCRIAGEVSDSVVGPGV
+VVAAGATVRGSLLLGDCEVPAGAVLDTVVVDVGGAVPAREVTGRAAPA-EEVVVLTPQDRGPA-EDETTGSGRPGRSD
+>KD337_NAFOICDF_00049
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------MADPFPKDPAGSTVALVLAG
+GRGSRLDPLTAARSKPAVPFAGQYRLIDVVLSNLAHSGLKDVWIAEQYRPFTLNQHLAGGRPWDLDGTRHGLRILPPAEG
+REEEGFSAGNGHALAQQVPILRSFGAERVVVLSADHLYQLDLRPVLAAHADSGAELTMVTTVTDEDPSRFGVVQADEDGA
+VTAYDYKPEDPEGRLVATEVFVFDVAALHEVVAELVAREKAAGEHADGEEDEDGDPVASSLGDYGETIIPAFVERGRVRE
+HRLEGYWRDIGTLDAFYRAHMELLDGAGLDLAAPGWPLLTNPPAAPPARVGPRAEVSNALLSPGCVVKGTVEDSVLGPGV
+VVERGAHVRRSVLFGECIVPRGARLDAVIADVGAHIPAE-EVGRSRPGPGNLTVLTPATRDPDSEDETTGGA-AAKDG
+>SA211_MHAAABBN_02306
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------MADPFPTDPEGAVVALVLAG
+GTGGRLMPLTAARAKPMVPLAGQYRLIDVVLSNLAHSRLRDVWVVEQYRPFTLNQHLAGGRPWDLDGTRHGLRLLPPAQG
+RAEEGFARGNGHAIAQQLPLLEQFGAETVVVLSADHLYQLDLRPVLAEHARSGAELTVVTTETDEDPSRFGVVQVDDDGA
+VTDYAYKPEDPAGTLVATEVFVFDVAALSEVVGDLVAGEDEAATKDEGETDEDGDPVGSSLGDYGESIIPAFVARGRVRE
+HRLVGYWRDIGTLDAYVRAHREILDGTGLDVAAEGWPLLTNPHAAPPAWVAPEATVTGSLLSPGCRIAGEVTDSVVGPSV
+VVEAGAVVRGSILLGECTVPSGAVLDTVIADVGAAIPAEGATGRAEPA-DEVVVLEPGERGPASSDETTGSGAPVRD-
+>TT9_LFPAFLNI_00290
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------MADPFPKDPEGAVVALVLAG
+GTGGRLMPLTAARAKPMVPLAGQYRLIDVVLSNLAHSRLRDVWVVEQYRPFTLNQHLAGGRPWDLDGTRHGLRLLPPAQG
+RAEEGFARGNGHAIAQQLPLLEQFGAETVVVLSADHLYQLDLRPVLAEHTRSGAELTVVTTETDEDPSRFGVVQVDDDGA
+VTDYAYKPEDPAGTLVATEVFVFDVAALSEVVGDLVAGEDEAATKDEGETDEDGDPVGSSLGDYGESIIPAFVARGRVRE
+HRLVGYWRDIGTLDAYVRAHREILDGTGLDVAAEGWPLLTNPHAAPPAWVAPEATVTGSLLSPGCRIAGEVTDSVVGPSV
+VVEAGAVVRGSILLGECTVPSGAVLDTVIADVGAAIPAEGATGRAEPA-DEVVVLEPGERGPASSDETTGSGAPVRD-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000209.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000209.fa
new file mode 100644
index 0000000000000000000000000000000000000000..186151b98ce2b6aa6e9125b83c9ec6f96f0cf0ba
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000209.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_00072
+MQDPSSESHAALERLRGAPKPVPAPEEAAGAPRTPDQDDDGAATAEDPVPAAARTPADDPAPAPSPSPPQDAETAPAPDA
+SPASDADAPADVEADVEAPRPARRATPPRPRRPRPD--LPPRPAPPRARPAHRLSPRRPMRGACARAAARTSTRRWSGRA
+PPAPPRSSAPRRDLSDILDRLGSPDLARFTAPLVGTVERILPAPGADPQKAAQAARRREEAEARRRARLQSGRERAAESA
+RRRAAEHDRLAAEAAEREAALRD-DDARSEARRADEEAAAAKEACRQERLRERRTAGRAAAEERARLAAEAVEADRERER
+REAEEAAAAAAREEAALQARLQEEARARRERAEQEERLAQERAAEEARLAQAARIARRRREEERERQRREAERRRRLAQE
+AKARAAADQEKRRQQEQERRRREAKVAEERARVQAERRAREEAELAERERRRLEAEAEAERRRQAQEAERRRREAERAEA
+ERRARAEEAERRRREAEEAARRAAEARRLHAERTRAHTVLHAERALAQARLLEDRARDAERRAAEEEARRLREHQDRESR
+ALYRAARELEGPEVIPAASQRPLLARPEEGLTDEELVARARQALPEWRHRQRLATKARAVGAETAAGRSA---GPPTGPV
+PLIPGYT-PAAPEEPAGPATVRDRRGQLVLTLAWAAFVLAGVWGLGLFRFVPGLDALDAGPYPAAGDGRHGSGATVFSLF
+PLHPVIWPVLWLLTGLHVARQWGPGQGAAPRHRRTRGPMAGTLLALALWFPLTVLVPWGLESVLWLVALALMLGAVRRLG
+ARPAAGRLARLAEDGAPGALLGTLLAGAPTALAATLHAWGVHVGRFPTELVAALVLLTLLPGAVRLVLGGRGRMGVAVGM
+AWTLLCLALPRLLPSPLGAQQSAWVGFAAAFGALLLLTAAAVRRSWVRQIERDAARRPP--PAV----A
+>KBS0714_MOLHKGIG_00281
+MQDASSESRAALERLRAA-----------------------------------------SAPRPDDAETRA------PAA
+RPRRALAAPGEI---------SRRDLRRHERALRSG--RSETAAERRVREDHRADVHRAMD--------RLRT-------
+-PGAPAEQRPRRDLSEILDRLGSPDLARFADPLVGTVERILPAPGRDPEKAAEAARRRTAAEERRRARLRAG--------
+--RAAEHERPVAEAA-------------------------------------------AAAQAR----------------
+------DAARARDAAALQARLDEEARR----------------------AQAARVARRRREEEKQRRRREAERRRRVAAE
+EKARAAAEAEARRREREERRRREAEVAAERARVQAERRAREEAALAERERLRLEAEAEAERRRQAAEAERRRLEAERVEA
+ERRRRAEEAERRRREAEEAARLEAERRRRQAARVRAHTVLHAERALAQARLLEDRAREAERRAAEDAARRRREHEERESR
+ALARAARELEGPEVFPAAADRPLLSDPEERLTDEELFARARVALPEWRRRQRLSTKAQAVRAEATAHSSA---GPVTGAL
+PLIPGYT-PAPPEEPAGSPTAADRRGQALLTVVWALFVLSGAWGLGLAGRVPGLGALDAGAYPLTADGRHGPGASVFGLS
+PLHPAIWPVLWLLTGMYVLRQWGRGQGASPRHRRIRGAIAGALLALALWFPLAVLAPGGFDVVPWLLALVLMLRVVRRLG
+ARPAARRVARVAEDGALGVLLGTLLAGAPTAVGAALHAWGVHVGWFPTELLALLVLVALLLAALRLVLGGRGRMGVALGM
+AWTLLCLALPRLLPSPLGAQQSVWVGLAAAFGALLLVTAAAVRRSWARQIERDAARRPH--PAG----A
+>KD337_NAFOICDF_00058
+M-----------------------------------------------------TSQDDDAPRPAPPAPRH-------AA
+RPRRALAEPGRL---------APEQLERHTRRLRGEPLPPETPEEAAARAGRRHDLAAALD--------RLPA-------
+-ESAPAAPRPRADLSDLLDRIGTPDLARFADPLLGTVGRILPS-GPSPERAAAAARRRAEHEGRRRAERAAGRARAAEAA
+RRRAEETARREAEAAERARAARTVEESRAEAVRAAEDAAREAERHRAERLRERREAARAAAADKARRVAEAAERARVEEE
+ALLAVEADAQAREVAAAQAEPDALARERRERADQEE-----------RRRRAALLARRRRDEERRRRRREAERARREAEE
+QRERAA---------------------------RAE--------------------------RSAAEAARRRQAEEAAEA
+ERRQMAVEAARARAEAERLAQEAARERRRRIAAARALPRTVAARHIAAGTAAEDRRRQAAARASEEAARVLAAHHDRETR
+ALMAAARELDGPDVVPPAHLRPLLADPAEGLDDAALLERARAALPQWRRTGRLLTKADAVRAQ-TAHGAADGTGPATGAF
+PIVPGYVPPSGPPEPRAPATREDRRHQLELTGAWLLFVLASAWGLGLFRLVPGLRVVDQGSYTAAHGGRYAFTTSVLSLF
+PLHPAVWPVLWLALGVYVAHQWGPGQGAAARQRQTRRSVAGALALTALWFPLAVLVPWGLEFMVWLAALALMIRVMRGLT
+AVPARTRAAQTCTDGVLGGFLGLLLAAAPTTLASPVAATGVFWGWFPSALVAAALLWAVVLTGARLALQDRGRLGLALGM
+AWTLLCLALPRLLPSPLGAWQSAWVGLSAVAGGLGVLLLVVVRRTWVREIEEQAAAAPQGVPAGRVNGR
+>SA211_MHAAABBN_02296
+MQDASSESRAALERLRDA-----------------------------------------SAPRPDDDATRA------PAE
+RPRRALAAPGEI---------SRRDLRRHERALRSG--RPETAAERRVREDRRADVHRAMD--------RLRT-------
+-PGAPAQQRPRRDLSEILDRLGSPDLARFTDPLVGTVERILPAPGRDPEKAAEAARRRTAAEERRRARLRAGRERAAEAA
+RRRAAEHERPVAEAA-------------------------------------------AAAQAR----------------
+------DAARARDAAALQARLDEEARR----------------------AQAARVARRRREEEKQRRRREAERRRRVAAE
+EKARAAAEAEARRREREERRRREAEVAAERARVQAERRAREEAALAERERLRLEAEAEAERRRQAAEAERRRLEAERVEA
+ERRRRAEEAERRRREAEEAARLEAERRRRQAARVRAYTVLHAERALAQARLLEDRAREAERRAAEDAARRRREHEERESR
+ALARAARELEGPEVFPAAADRPLLSDPEERLTDEELFARARVALPEWRRRQRLSTKAQAVRAEATAHSSA---GPVTGAL
+PLIPGYT-PAPPEEPAGSPTAADRRGQALLTVVWALFVLSGAWGLGLAGRVPGLGALDAGAYPLTADGRHGPGASVFGLS
+PLHPAIWPVLWLLTGMYVLRQWGRGQGASPRHRRIRGAIAGALLALALWFPLAVLAPGGFDVVPWLLALVLMLRVVRRLG
+ARPAARRVARVAEDGALGVLLGTLLAGAPTAVGAALHAWGVHVGWFPTELLALLVLVALLLAALRLVLGGRGRMGVALGM
+AWTLLCLALPRLLPSPLGAQQSAWVGLAAAFGALLLVTAAAVRRSWARQIERDAARRPH--PAG----A
+>TT9_LFPAFLNI_00280
+MQDASSESRAALERLRGA-----------------------------------------SAPRPDDDATRA------PAA
+RPRRALAAPGEI---------SRRDLRRHERALRSG--RPETAAERRVREDRRADVHRAMD--------RLRT-------
+-PGAPAEQRPRRDLSEILDRLGSPDLARFADPLVGTVERILPAPGRDPEKAAEAARRRAAAEERRRARLRAGRERAAEVA
+RRRAAEHERLAAEAA-------------------------------------------AAAQAR----------------
+------DAARARDAAALQARLDEEARR----------------------AQAARVARRRREEEKQRRRREAERRRRVAAE
+EKARAAAEAEARRREREERRRREAEVAAERARVQAERRAREEAALAERERLRLEAEAEAERRRQAAEAERRRLEAERVEA
+ERRRRAEEAERRRREAEEAARLEAERRRRQAARVRAHTVLHAERALAQARLLEDRAREAERRAAEDAARRRREHEERESR
+ALARAARELEGPEVFPAAADRPLLSDPEERLTDEELFARARVALPEWRRRQRLSTKAQAVQAEATAHSSA---GPVTGAL
+PLIPGYT-PAPPEEPAGSPTRADRRGQTLLTVAWALFVLSGAWGLGLAGRVPGLGALDAGAYPLTADGRHGPGASVFGLS
+PLHPAIWPVLWLLTGMYVLRQWGPGQGASPRHRRIRGAVAGTLLALALWFPLAVLAPGGLDVVPWLLALVLMLRVVRRLG
+ARPAARRLARVAEDGALGVLLGTLLAGAPTAVGAALHAWGVHVDWFPTELLALLVLMALLLAALRLVLGGRGRLGVALGM
+AWTLLCLALPRLLPSPLGAQQSAWVGLAAAFGALLLVTAAAVRRSWARQIERDAARRPH--PAG----A
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000210.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000210.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f9f8280e69b21264fb7b02b04de3ac50ab6be0bb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000210.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00073
+MPSYRARLQIGDLLPGHRPEEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH
+RAGEDAEAAEVARRMAEAVSGVAATGRLDVLRRDGGRWVPVPAGPGR
+>KBS0714_MOLHKGIG_00280
+MPSYRARLQIGDLLPGHRPEEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH
+RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGLGR
+>KD337_NAFOICDF_00059
+MPSYRARLQIGDVLPGHRPEEVLDTAEAAIGATHEVAAKDVEVVARVPRIVLRFTVPAAH
+RAAEDAEAAAVAGRMAEAVADVATVGRLDVLRREGGRWLPVSA---R
+>SA211_MHAAABBN_02295
+MPSYRARLQIGDLLPGHRPDEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH
+RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGLGR
+>TT9_LFPAFLNI_00279
+MPSYRARLQIGDLLPGHRPDEVMDLAEAAVQASHVLAAKDIEVVARVPRIVLRFTVHGSH
+RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGPGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000212.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000212.fa
new file mode 100644
index 0000000000000000000000000000000000000000..12daec69a7fa0302d7e0b79114a912b80e7fd379
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000212.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00076
+-------MAPMTGGYLRHLKSQDVQPGDSFLTRRGEPAPPVASTRVMRDDFGTPALVIAT
+LEGGREVKIAHGSVIRVRTDRQEERRAVPDTTFSPVDAGSPEERIVAVGKRHLEDTELTA
+TAARLSHGLNLRSGSQLEDLFGMAERLYLLHEDVEGTLAALGLLTNLPWDGAVGRWKSIQ
+AGLALASQILRDEGEHIVAANLGKRLHEADEVPSEPGRAARVLEVRQRQLNEPQLYDREI
+SRALQARDAEAEYRWRRARFAQLLYLRGRGGSETLTDADLDSRIARELGTLRGLARDLDA
+KAAARS
+>KBS0714_MOLHKGIG_00277
+-------MAPVVGGYLRHLKSQDVQPGDSFLTRRGEPAPPVASTRVMRDDFGTPALVIAT
+LEGGREVKIAHGSVIRVRTDRPEERRAVPDTTFSPVDAGSPEERIVAVGKRHLDDTELTA
+TAARLSHGLNLRSGSQLEDVFGMAERLYLLHEDTEGTLATLGLLTNLPWDGAVGRWKSIQ
+AALSLASLILREEGEHIAAANLGRRLLEADEVPSEPGRASRVLEVRQRQLNEPPLYDREI
+SRALQARDAEAEYQWRRARFGQLLYLRARGGSETLTDADLDSRIARELGALRTLADELEA
+KAATRR
+>KD337_NAFOICDF_00061
+MSDGGAEVAPIAGGYLRHLKAQDVRPGDSFLTRRGEPAPAVASTRVVRDDFGTPALVIAT
+LVGGREVKIAHGSVIRVRTDRPEEVKAAADTAFSPVDAGSPESRIVAVGQRHLDDAELTA
+TAARLSHGLNLRSGAQLEDVFGMAERMYLLHEDVEGTLTTLGLLTNLPWDGAVGRWKSIQ
+AALGLAALILREDGDHITAANLGSRLKEADEVPSEPGRAARVLEVRQRQLDEPQLYDREI
+SRALQARDAEAEFRWRRARFAQLLYLRGRGGSQTLTDQDLDSRIHRELGTLRQLAKRLAA
+QAA-RA
+>SA211_MHAAABBN_02292
+-------MAPVVGGYLRHLKSQDVQPGDSFLTRRGEPAPPVASTRVMRDDFGTPALVIAT
+LEGGREVKIAHGSVIRVRTDRPEERRAVPDTTFSPVDAGSPEERIVAVGKRHLDDTELTA
+TAARLSHGLNLRSGSQLEDVFGMAERLYLLHEDTEGTLATLGLLTNLPWDGAVGRWKSIQ
+AALSLASLILREEGEHIAAANLGRRLLEADEVPSEPGRASRVLEVRQRQLNEPPLYDREI
+SRALQARDAEAEYQWRRARFDQLLYLRARGGSETLTDADLDSRIARELGTLRTLADELEA
+KAATRR
+>TT9_LFPAFLNI_00276
+-------MAPVVGGYLRHLKSQDVQPGDSFLTRRGEPAPPVASTRVMRDDFGTPALVIAT
+LEGGREVKIAHGSVIRVRTDRPEERRAVPDTTFSPVDAGSPEERIVAVGKRHLEDTELTA
+TAARLSHGLNLRSGSQLEDVFGMAERLYLLHEDTEGTLATLGLLTNLPWDGAVGRWKSIQ
+AALSLASLILREEGEHIAAANLGRRLLEADEVPSEPGRAARVLEVRQRQLNEPPLYDREI
+SRALQARDAEAEYQWRRARFDQLLYLRARGGSETLTDADLDSRIARELGTLRTLADELEA
+KAATRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000216.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000216.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f891785020a6724936e4ba2c464ef76a8ca5472d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000216.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00090
+MTALASRPGAASRASRSAPVSPASRSTRRTHRRRTLVGAGTVLRRLAGAVGVVWATATLT
+FLMQFLLPGDRATLVFNLRAGQAQPRTAEELAPLNALFGFQDPVLVQYLHFLGGLLRGDL
+GTSYVTFEPVTTVIGDQLAPTLLLTGASIAIAWAVALVL-LVATVRRARWVSGLASAVEA
+LLAALPHYWLGVILLVVFALGLGLFPVVGG----------------------------TG
+PAALVLPALTMGLPLAGYLAQTMRSEYASVLDQPFILTARTRGQSDAGIRVRHALRHALL
+PGLSLTGWAVGAQFSAAVIAEGVFSRPGIGGVLVDAANGRDLPVVCGVVVLIAIVYVLAN
+LAVDVLYTVVDPRLRSAR--
+>AS2_ACLBLIBL_00267
+M-------------------------------------LRLIGKRLLLLIPTLFGLSVLL
+FLWVRSLPGGPATALLGDRA------TPEAVARVNAAYGFDKPLLEQYTTYMGRLLRGDF
+GTSTMTNRPVLEEFADRFPATLELSLFAIVFAVAIGIPLGYWAARHVGRWQDNIAVVLSL
+IGVVVPVFFLAFILKWVFAVKLGWLPTDGRQDPRLDATHYTNFYVWDGISTGEWDAALNA
+LTHLVLPGIALGTIPLAIIARITRASVLDVQNADFVRTARAKGLAPRLIRDRFIMRNALL
+PVSTTLGLQLGLLISGAVLTETVFAFNGIGRFLAQAIFQLDFPVLQGFIIFIALIYSLIN
+LVVDVSYGLIDPRVRVS---
+>KD337_NAFOICDF_00135
+M-------------------------------------ARRILLRLALALAVLLGAYTAA
+FLILYVMPGDPVTAMAAGGL-EAGAISDADLQALRAEHGLDRPLPVQYLSQLAAAVTGDL
+GTSVQTGQPVTEAILDRLPTTLRLAWAALLVAVVAGPAIALVAAGTRRRWVRATASAIPA
+LGAALPTFWTGLLLVQVFSFGLGWLPALGD----------------------------DG
+LAGLVMPALTLGLPLSALIAQVMLRALDESGTQEYVETALASGQSRRRVLITHMLPNAAL
+PTLAMLGVITGNVVAGAVVVETVFSRPGVGQLTVQAVTAQDLPVVLGVVLLSSLVFVLVT
+LTVDLLSPLLDPRVGPAGAV
+>SA211_MHAAABBN_02133
+M-------------------------------------LRLIGKRLLLLIPTLFGLSVLL
+FVWVRSLPGGPATALLGDRA------TPEAVARVNAAYGFDKPLLEQYVTYMGRLLRGDF
+GTSIMTNRPVVEEFADRFPATLELSIFAIVFAVVIGIPLGYWAARHVGRWQDDVAVVLSL
+IGVVVPVFFLAFILKWVFAVKLGWLPTDGRQDPRIDATHYTNFYVWDGIITAEWDAALNA
+LTHLVLPGIALGTIPLAIIARITRASVLDVQDADFVRTARAKGLAPRLIRDRFIMRNALL
+PVSTTLGLQLGLLISGAVLTETVFAFNGIGRFLAQAIFQLDFPVLQGFIIFIALLYSLIN
+LVVDVSYGLIDPRVRVS---
+>TT9_LFPAFLNI_00125
+M-------------------------------------LRLIGKRLLLLIPTLFGLSVLL
+FVWVRSLPGGPATALLGDRA------TPEAVARVNAAYGFDKPLLEQYVTYMGRLLRGDF
+GTSIMTNRPVVEEFADRFPATLELSIFAIVFAVVIGIPLGYWAARHVGRWQDDVAVVLSL
+IGVVVPVFFLAFILKWVFAVKLGWLPTDGRQDPRIDATHYTNFYVWDGIITAEWDAALNA
+LTHLVLPGIALGTIPLAIIARITRASVLDVQDADFVRTARAKGLAPRLIRDRFIMRNALL
+PVSTTLGLQLGLLISGAVLTETVFAFNGIGRFLAQAIFQLDFPVLQGFIIFIALLYSLIN
+LVVDVSYGLIDPRVRVS---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000217.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000217.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fdb42fdbc5ecbf5518ddcfe083c8dc2d3bda71a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000217.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00095
+MTENLPTAEPEYDVAA-PLDTDFYLALGDVSDDEKEVWRRARAFALEPDVLPRIREAWDR
+HEYPLDLVARLGAADLLRDGVPVDGLPEVSRVAAGLAMMELSRLDGSIATVAGVQGGLAM
+RSIQLCGSDEQRAELLPAMSRGELYGAFALTEPTHGSDSVSLETRAERVDGGWRLRGHKK
+WIGNGAAGGVSVVWARSAEDEQVRGFIVRQESEGYTAEVIKGKVALRAIDQAHITLDGVF
+VPDADVLPEARSFKDTSRVLFATRVGVAWSALGQAVGCYEAAVQYAGQRIQFGRPLAAAQ
+TVQTRLAEMLSQLTQVQLLVLRATRLEDEGRLTGPMASLAKYSATRAARSIAANARDLLG
+GNGILIQNEVARHFADIEAIHTYEGTETVQGLIIGREITGVGAFV
+>KBS0714_MOLHKGIG_00268
+MTETLPTVEPEYDVAT-PLDTDFYLALADVSDAEKDVWRRARAFALEPDVLPRIREAWDR
+HEYPLDLVARLGQADLLRDGVPVDGLPEISRVAAGLAMMELSRLDGSIATMTGVQGGLAM
+RSIQLCGSEEQRAEHLPAMARGELYGAFALTEPTHGSDSVSLETRAERVDGGWRLHGHKK
+WIGNGAAGGVTVVWARSAEDEKVRGFIVRQESEGYTAEVIKGKVALRAIDQAHITLDGVF
+VPDADVLPEARSFKDTSRVLFATRVGVAWSALGKAVGCYEAAVHYAGQRVQFGRPLAAAQ
+SVQTRLAEMLSQLTQVQLLVLRATRLEDEGRLTGPMASMAKYSATRAARSIAANARDLLG
+GNGILIQNEVARHFADIEAIHTYEGTETVQGLIIGREITGVGAFV
+>KD337_NAFOICDF_00066
+MTETLPTAEPDYSTITGPLDTDAYAVFAELPDEDLALARAARAF-LTPEVQKRLQEAWDT
+GEYPTELIAGLAEADLLRDGVAVEGKPAQSRLACGLAAMETSRIDGSLATVVGVQGGLAM
+RSIEMCGSDEQKAKYLPAMDRGELFGAFALTEPTHGSDSVSLQTTATKVEGGWRISGHKK
+WIGNGAAGGITVTWARSAEDGQVKGFIVQQDAEGYSAEVIRGKMSLRAIHQAHITYDDVF
+VPDEDVMPGAQSFKNTAAVLFATRLGVAWAAVGHALGCYEAAVQYAKQRVQFGRPLAESQ
+IVQERLARMLSELTQVQLLVLRAARLEDAGKLTGPQASLAKYSATRTARSIAANARDLLG
+GNGILLENEVGKHFADIEAIHTYEGTETVQALIVGRDITGVGAFA
+>SA211_MHAAABBN_02281
+MTETLPTVEPEYDVAT-PLDTDFYLALADVSDAEKDVWRRARAFALEPDVLPRIREAWDR
+HEYPLDLVARLGQADLLRDGVPVDGLPDVSRVAAGLAMMELSRLDGSIATMTGVQGGLAM
+RSIQLCGSEEQRAEHLPAMARGELYGAFALTEPTHGSDSVSLETRAERVDGGWRLHGHKK
+WIGNGAAGGVTVVWARSAEDEKVRGFIVRQESEGYTAEVIKGKVALRAIDQAHITLDGVF
+VPDADVLPEARSFKDTSRVLFATRVGVAWSALGKAVGCYEAAVHYAGQRVQFGRPLAAAQ
+SVQTRLAEMLSQLTQVQLLVLRATRLEDEGRLTGPMASMAKYSATRAARSIAANARDLLG
+GNGILIQNEVARHFADIEAIHTYEGTETVQGLIIGREITGVGAFV
+>TT9_LFPAFLNI_00266
+MTETLPTVEPEYDVAT-PLDTDFYLALADVSDAEKDVWRRARAFALEPDVLPRIREAWDR
+HEYPLDLVARLGQADLLRDGVPVDGLPDVSRVAAGLAMMELSRLDGSIATMTGVQGGLAM
+RSIQLCGSEEQRAEHLPAMARGELYGAFALTEPTHGSDSVSLETRAERVDGGWRLHGHKK
+WIGNGAAGGVTVVWARSAEDEKVRGFIVRQESEGYTAEVIKGKVALRAIDQAHITLDGVF
+VPDADVLPEARSFKDTSRVLFATRVGVAWSALGKAVGCYEAAVHYAGQRVQFGRPLAAAQ
+SVQTRLAEMLSQLTQVQLLVLRATRLEDEGRLTGPMASMAKYSATRAARSIAANARDLLG
+GNGILIQNEVARHFADIEAIHTYEGTETVQGLIIGREITGVGAFV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000219.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000219.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ff891f1eb2eb3db57145063e27026dd004b1ac90
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000219.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00097
+MSTEQNSTQTPAYRAAHVPAGQDLGHRWSTRVADHEDPADRRAIRQIAELTFESSAEADL
+VEELAGGGEGWLPQYSLVAMTASIPGTDLQSDPMGYGTLVRAHVGEAEVLALAPHGVLPE
+HQGEGAGTAIVNALLQKAQGDGEKVVVVYGWPEYYAKFGFRPGVEHGVTAAFADQPEALQ
+VLTLQDDAEVPSGEFRYPPAFGAENAQVAGRA
+>KBS0714_MOLHKGIG_00266
+MSAEQNSTQTPGHRTAHVPAGQDLGHRWSTREADHDDPADRRAVRQIAELAFASTAEADL
+VEALADGAEGWLPQYSLVAMTAAIPGTDLQSDPMGYGTLVRAHIDDAEVLALAPHGVLPE
+HQGEGAGTALVNALLQKAQADGEEVVVVYGWPEYYAKFGFHQASEHGVHAAFARQPEALQ
+ILTLQDGAEVPAGEFRYPPAFGAENAQVAGR-
+>KD337_NAFOICDF_00068
+MSTEKGSTATPTYRAAHVPEGQDLGHRWSTRLAHHDDPADRRAVRQIAELTFESSAEADL
+VEELVASGEGWLPQYSLMAMTASIPGTDLYSDPMGYGTLVRAHIDDAEVLALAPHGVLPE
+HQGEGAGTALVNALLEKAQKDGEQAVVVYGWPEYYAKFGFRPAAEHGVTAAFATQPEALQ
+VIALQEGAEIPSGEFRYPPAFGAENAQVAGR-
+>SA211_MHAAABBN_02279
+MSAEQNSIQTPGYRAAHVPAGQDLGHRWSTREADHDDPADRRAVRQIAELAFASTAEADL
+VEELAGGAEGWLPQYSLVAMTAAIPGTDLQSDPMGYGTLVRAHIDDAEVLALAPHGVLPE
+HQGEGAGTALVNALLQKAQADGEEVVVVYGWPEYYAKFGFHRASEHGVHAAFARQPEALQ
+VLTLQDGAEVPAGEFRYPPAFGAENAQVAGR-
+>TT9_LFPAFLNI_00264
+MSAEQNSTQTPGHRAAHVPAGQDLGHRWSTREADHDDPADRRAVRQIAELAFASTAEADL
+VEELAGGAEGWLPQYSLVAMTAAIPGTDLQSDPMGYGTLVRAHIDDAQVLALAPHGVLPE
+HQGEGAGTALVNALLQKAQADGEEVVVVYGWPEYYAKFGFHRASEHGVHAAFARQPDALQ
+VLTLQDGAEVPAGEFRYPPAFGAENAQVAGR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000220.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000220.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6d9deb9a49c81123c3f57e2161b6a5bfb85b57be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000220.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00098
+MDRMILINLKYTVQPERADEWMDAVAKYTADVRSEPGNLFFEWYRPVEGGPNEYLLIEGF
+TDEGAKAHVESPHFQEGIDAMRPLLASTPQIISEHVDAEGFGPMGELQID
+>KBS0714_MOLHKGIG_00265
+MDGMILINLKFTVQPERADEWMDAVAKYTADVRSEPGNLFFEWYRPVEGGPNEYFLLEGF
+TDEGAQAHVASPHFQEGLDAMRPLLASTPQIISEQVGAEGFGPMGELQID
+>KD337_NAFOICDF_00069
+---MILINLKFTVKPELADQWMDAVAKYIADVRSEPGNMFFEWYKPVEGGDNEFFLLEGF
+TDEGAQAHVASPHFQEGIDAMRPLLQSTPQIISEQIGAEGFGPMGEIQID
+>SA211_MHAAABBN_02278
+MDGMILINLKFTVQPERADEWMDAVAKYTADVRSEPGNLFFEWYRPVEGGPNEYFLLEGF
+TDEGAQAHVASPHFQEGLDAMRPLLASTPQIISEQVGAEGFGPMGELQID
+>TT9_LFPAFLNI_00263
+MDGMILINLKFTVQPERADEWMDAVAKYTADVRSEPGNLFFEWYRPVEGGPNEYFLLEGF
+TDEGAQAHVASPHFQEGLDAMRPLLASTPQIISEQVGAEGFGPMGELQID
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000226.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000226.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f895dc9cf38c2271fd33c4b655c017fea5149d72
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000226.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00113
+MSDSTRNSPLHPVHEAAGATFTDFGGWNMPLKHGSELAEHKAVRTAAGLFDLSHMGEVRV
+TGPQAGAMLDYALSSVLSTLKPGRAKYALCLTDAGTILDDTIVYRMDDGEDGSEPDFMVV
+PNAGNIAAVHTALNQRASGWDATVEDQSSTTSLVAVQGPKAEAILAQAMPEAAEQLAALK
+YYGHLTLTVPTEAGDVTAVVARTGYTGEDGFELFLPASSTQEAGDRGSAVWNAVLKAAEA
+ADVELTLCGLASRDSLRLEAGMPLYGNELDTAHQPHASGVGFAVPASKEADFVGKAALVG
+KDDAEEVLVGLRGEGRRAARHGYAVLDESGERVGEVTSGAPSPTLGHPIALARVRRDVAA
+EGTSLQVDLRGRGEPFTVVATPFYRRER
+>KBS0714_MOLHKGIG_00256
+MSDSTRNSPLHPVHEAAGATFTDFGGWNMPLKYGSELAEHKAVRTSAGLFDLSHMGEIRV
+TGPEAGAMLDHALSSVLSTLKPGRAKYALCLTDAGTILDDTIVYRMDDGEAGSEPDYLVV
+PNAGNIAAVHTALNQRASGWDAVVEDESSTTALVAVQGPQAERILARAMPEAAAQLAELK
+YYGHLTLTVPTDAGDVTAVVARTGYTGEDGFELFLPAASTAEAGDRGSAVWNTMLSAADE
+AGVELTLCGLASRDSLRLEAGMPLYGNELDTGHQPHASGVGFAVPASKEADFVGRSALVG
+RDDVEEVLVGLQGAGRRAARHGYAVLDESGERVGEVTSGAPSPTLGHPIALARVRRDLAA
+EGTSLQVDLRGRGEPFTVVATPFYRRER
+>KD337_NAFOICDF_00081
+MTESTRNSPLHPVHEAAGASFTDFGGWNMPLKYGSELAEHKAVRESAGLFDLSHMGEVRV
+SGPESGAMLDHALSSSISVLKPGRAKYALCLTDAGTVLDDLIVYRTDSGAEGEDQEFLVV
+PNAGNISAVVTALTQRASGWDVEVHDESSTTALVAVQGPQSEAILARLMPASAQELAELK
+YYGHVTLTVPTAAGDVQAVVARTGYTGEDGFELFLPASSTAEAGDRGSAVWSAVVKAAEE
+AGIALTPCGLASRDSLRLEAGMPLYGNELDTAHQPHASGVSFAVPASKEGDFVGKAALVG
+KDEVEEVLVGLKGEGRRAARHGYSVLDADGAVIGEVTSGAPSPTLGHPVAMARIRREHAA
+EGTSVQVDLRGRGEPFTVVPLPFYTRAR
+>SA211_MHAAABBN_02270
+MSDSTRNSPLHPVHEAAGATFTDFGGWNMPLKYGSELAEHKAVRTSAGLFDLSHMGEIRV
+TGPEAGAMLDHALSSVLSTLKPGRAKYALCLTDAGTILDDTIVYRMDDGEAGSEPDYLVV
+PNAGNIAAVHTALNQRASGWDAAVEDESSTTALVAVQGPQAERILARAMPEAAAQLAELK
+YYGHLTLTVPTDAGDVIAVVARTGYTGEDGFELFLPAASTAEAGDRGSAVWNTMLSAADE
+AGVELTLCGLASRDSLRLEAGMPLYGNELDTGHQPHASGVGFAVPASKEADFVGRSALVG
+RDDVEEVLVGLQGAGRRAARHGYAVLDESGERVGEVTSGAPSPTLGHPIALARVRRDLAA
+EGTSLQVDLRGRGEPFTVVATPFYRRER
+>TT9_LFPAFLNI_00255
+MSDSTRNSPLHPVHEAAGATFTDFGGWNMPLKYGSELAEHKAVRTSAGLFDLSHMGEIRV
+TGPEAGAMLDHALSSVLSTLKPGRAKYALCLTDAGTILDDTIVYRMDDGEAGSEPDYLVV
+PNAGNIAAVHTALNQRASGWDAVVEDESSTTALVAVQGPQAEKILARAMPEAAAQLAELK
+YYGHLTLTVPTDAGDVIAVVARTGYTGEDGFELFLPAASTAEAGDRGSAVWNTMLSAADE
+AGVELTLCGLASRDSLRLEAGMPLYGNELDTGHQPHASGVGFAVPASKEADFVGRSALVG
+RDDVEEVLVGLQGAGRRAARHGYAVLDESGERVGEVTSGAPSPTLGHPIALARVRRDVAA
+EGTSLQVDLRGRGEPFTVVATPFYRRER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000230.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000230.fa
new file mode 100644
index 0000000000000000000000000000000000000000..288e110fd3d6d72da48fc6ede07882fce9d824f7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000230.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00122
+------MDLSNQSAIVTGGASGLGHATARRLAEAGAAVVVVDLPDREGETLRADAVAALG
+PRARLVTGDVTAEATAEEAVAAALEAGPLRVLVNCAGVATPGKLVGRGGPLSAEVLTRVL
+AINTVGTVNFMSRAAAAMQGQEPQGEDRGVIVNTASVAAYDGQIGQIAYAASKGAVVSLT
+LPAARELAASQIRVVTIAPGLMETPMMAGLPEAAREALATKTPHPARLGRPEDYALLVEQ
+IVANPFLNGEVIRLDGAVRLEPK
+>KBS0714_MOLHKGIG_00248
+------MDLSNQSAIVTGGASGLGHATARRLADAGAAVVVVDLPDRERETVRADAVAALG
+PRARFVTGDVTAEDTAREAVAAALEAGPLRVLVNCAGVATPGKLVGRDGPLSAEVLSRVL
+AINTVGTVAMMAQAAAAMKAQEPLGEDRGVIVNTASVAAYDGQIGQIAYSASKGAVVALT
+LPAARELASSQIRVVTIAPGLMETPMMAGLPEAAREALSTKTPHPARLGRPEDHALLVEQ
+IVSNPFLNGEVIRLDGAVRLEPR
+>KD337_NAFOICDF_00090
+MARRESLDLQGASAIVTGGASGLGHATARRLAAAGAAVVVVDLPDREGESLRADAVASLG
+ERARFITGDVTAEATAEQAVAAALEAGPLRVLVNCAGVATPGKLVGRDGPLAAEALSRVL
+AINVVGTVTMMARAAAVMKDQELWGEDRGVIVNTASVAAFDGQIGQIAYSASKGAVAALT
+LPAARELAASQVRVVTIAPGLMETPMMAGLPEAAREALSTKTPHPARLGAPDDYALLVEQ
+IVSNPFLNGETIRLDGAVRLEPR
+>SA211_MHAAABBN_02260
+------MDLSNQSAIVTGGASGLGHATARRLADAGAAVVVVDLPDREGETVRADAVAALG
+PRARFVTGDVTAEDTAREAVAAALEAGPLRVLVNCAGVATPGKLVGRDGPLSAEVLSRVL
+AINTVGTVSMMAQAAAAMKAQEPLGEDRGVIVNTASVAAYDGQIGQIAYSASKGAVVSLT
+LPAARELASSQIRVVTIAPGLMETPMMAGLPEAAREALSTKTPHPARLGRPEDYALLVEQ
+IVSNPFLNGEVIRLDGAVRLEPR
+>TT9_LFPAFLNI_00248
+------MDLSNQSAIVTGGASGLGHATARRLADAGAAVVVVDLPDREGETVRADAVAALG
+PRARFVTGDVTAEDTAREAVAAALEAGPLRVLVNCAGVATPGKLVGRDGPLSAEVLSRVL
+AINTVGTVSMMAQAAAAMKAQEPLGEDRGVIVNTASVAAYDGQIGQIAYSASKGAVVALT
+LPAARELASSQIRVVTIAPGLMETPMMAGLPEAAREALSTKTPHPARLGRPEDYALLVEQ
+IVSNPFLNGEVIRLDGAVRLEPR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000233.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000233.fa
new file mode 100644
index 0000000000000000000000000000000000000000..79b978453a11e0a7df0827d2df999f052e4a4d0e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000233.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00128
+MRWHGDRAAASGVTALTNILGHPIICDAAGRGRSASVLTVQNSLRPAADSP-TGPRAHAS
+GRTEQLFGIRRHAAMPERDGALNPAAFEAGPWCLDLDGRPTGAAATVIMDNATAVAVHHA
+APGV-ETVVTTELQINVLAPLPAFDAAAITEGRAEGPLLECWTRPLSWDAGGGVGRAWLE
+DAEGRRIVEATGWFQAVPTGAPEHRAAFTAAADLPRGPETRVPMPGLLAARPETLPPAAR
+AGRPAVTAAVAPGARFAPKPELANPSGAVHGGAMTLRAVVAAQAAMPDRELYDVQAVRVV
+FTRPGHGEMVALTRVRHAGRSLRLVDVDLVPVGED-GAPVAEKPMVQVQVTFRAAR-
+>KBS0714_MOLHKGIG_00241
+M------------------------ICRVATGPWASVLPVQTTTSPTADSP-TGPRSHPS
+GRTEQLFGIRRHALMTERDGALNPAAFEVGPWCLDLDGRPTGAAATVIMDNATAVAVHHA
+ARDI-ETVVTTELQVNVLGPLPAFDAAAVTAGDEDGPLLECWTRPLAWDAAGGVARAWLE
+DADGRRVVEATGWFQSVPAGAPERMAEFVAAGRLPRGAETRVPMPGLLAARPESLPTADP
+DVRPAVDAAATAGARFAPKPELANPSGAVHGGAMTLRAVTAAQAAMPDRERYDVQAVRVV
+FVRPGHGEMVALTRVRHAGRSLRLVDVDLVPVGAD-GVPVADKPMVQVQVTFRAARS
+>KD337_NAFOICDF_00095
+MD--------------------------------------EITLNPDADARWRGPRRLLL
+GRPEQLAGLRRRETAEIQGDTLHPGDWEVGPWVRDLDGRPTGAAACVAADNLTAVALHWA
+AAEAYDAMVTTQLQVNVLRPLPVFDPA----DPADRPRLRMLGTPLSTDALGGCARGVIV
+DDDGTAYVEATGWFQATPGPMSLALEAFREHAALPVAEADRADLPAVTAVVADSVPAPRP
+GERPAVSQEMTAGLRFRAEPLLDNPGGMTHGGIQCLRAVLAAQAALPDRLEYDVQAVQVV
+FARPGLGEQVALTRVRHAGRSLRIVEVELVGVDPETGAPQAGRPSILAQVSFRAAQG
+>SA211_MHAAABBN_02254
+M------------------------ISRVAAGPWASVLPVQTTTSPTADSP-TGPRSHPS
+GRTEQLFGIRRHALMTERDGALNPAAFEVGPWCLDLDGRPTGAAATVIMDNATAVAVHHA
+ARDI-ETVVTTELQVNVLGPLPAFD-AAVAAGDEDGPLLECWTRPLSWDAAGGVARAWLE
+DADGRRVVEATGWFQSVPAGAPERMAEFVAAGRLPRGAETRVPMPELLAARPESLPTADP
+DTRPAVAAAPTAGARFAPKPELANPSGAVHGGAMTLRAVTAAQAAMPDRERYDVQAVRVV
+FVRPGHGEMVALTRVRHAGRSLRLVDVDLVPVGAD-GVPVADKPMVQVQVTFRATRS
+>TT9_LFPAFLNI_00242
+M------------------------ISRVAAGPWASVLPVQTTTSPTADSP-TGPRSHPS
+GRTEQLFGIRRHALMTERDGALNPAAFEVGPWCLDLDGRPTGAAATVIMDNATAVAVHHA
+ARDI-ETVVTTELQVNVLGPLPAFDAAAVTAGDEDGPLLECWTRPLAWDAGGGVARAWLE
+DADGRRVVEATGWFQSVPAGAPERMAEFVAAGRLPRGAETRVPMPELLAARPESLPTADP
+DTRPAVAAAPTAGARFAPKPELANPSGAVHGGAMTLRAVTAAQAAMPDRERYDVQAVHVV
+FVRPGHGEMVALTRVRHAGRSLRLVDVDLVPAGAD-GVPVADKPMVQVQVTFRAARS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000234.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000234.fa
new file mode 100644
index 0000000000000000000000000000000000000000..84e6a67aecd41cbb1b2fca49db6562a1f073f574
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000234.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00131
+MARRR-----------------------------------------------------RRPGGRSGLGH-----------
+-----PAGAPA--AAPAPIAASASPTQSPRPAEPAAAQPRLAEQDVAAAVARPAAAAPVAVESDLVPLGQRRRMGGYVPL
+AREGEWFAELAAADAAPAGETAEPTVLEAAHDDAAPAAEAAVTEPAAPTTTAA-------------AAAATTAAAQAPAA
+PAQPAAAAAAPTAPDTRSAPPASAAQPPRAEPAAASGRPARATKKTDAAEEAPAPSRLRKALPLVAGVVVLALVAVLAAR
+WLRTLDPVADFIAAYDGHPALAEGTPVGMPPWLGWQHFLNMFLMVLIIRTGLQIRNETRPPANFTPKKDGAFSARGNTPK
+KFSLTIWTHQALDALWLLNGVVFVVLLFVTGQWARIVPTDPYVFHHAFSAGIQYLSLDWPTENGWVHYNALQMLSYTLVV
+FVAAPLAALTGWRMSSWFPTEAKGLNRAFPMEAARKVHFPVMLFFVLFILTHVFLVFFTGALKNLNHMYTSRGDATDAWG
+LVVFLVSVAVTAAAWFLLRPSFTAPAASKFGTVGR
+>KBS0714_MOLHKGIG_00240
+MPKQRMAGYVPLKGAPAETEPAPAPAQDTTTAAPASAAAAVPVAPTAPTSGLTPLSARRRMAGYVPFAREAEWLGGAPAP
+AAGSIPAAAPARSVAPEPIAASASPTRAPAPAETEPVVPDVAAVVASATGAPAAAGVGAPVESDLVPLAKRRRMAGYVPF
+AREGEWFTELAAVGGPTAPEMVAQEVDAPEQA---------TAEP-TAEPAAAAPARPVVAELADVEPADAEPAVAAPVA
+AA--SAPEPAPTAPDTRSAPPASAVQPPR----AATGTPARTA-ETDAAESA-VPSRLRKALPAVAGVVVLALLAVLAAR
+WLRSLDPVADFIATYDGHPVLPEGTPEGMPWWMGWQHFLNMFLMVLIIRTGLQIRHETRPPANFTPTKDGLFSARGNTPK
+KFSLTIWMHQALDALWLLNGLIFVVLLIATGHWARIVPTDPHVFQHALSAGIQYLSLDWPTENGWVHYNALQMLSYALVV
+FVAAPLAALTGWRMSSWFPTEAKGLNKAFPMEVARKVHFPVMVFFVAFIVVHVFLVAFTGLLTNLNHMYTSRGGATDAWG
+LVVFLVSVAVTAAAWFFLKPAFTAPVASRFGTVGR
+>KD337_NAFOICDF_00096
+MP-QRMQGYTEFRG-------EPWPPRDRVPQAPAPT--------TTPAVAADERRPGRRMVGYTAFR-------GEPWP
+-----------------PVREAAQPAPAPAAAASPAEVTE-AAAAAVPLEATAPAGIAVP----------GRRMAGYTAF
+R-----------------------------------------GEPWPPARVGA-------------APQAPEPAPMATVE
+PA--VATGPTPTVEPVAAGAPETTPKP--------------------------APSTGRRVAAAVGGVVVLGLLAVLGAR
+WLLTLPEVAAFVARYPGVPRHPEVTPVGIPAWLAWQHFLNLFLLVLVVRTGLQVRHETRPPATFTPHQPGPFAPRSATGG
+TYSLTVWIHQALDALWLLNGLVFVVLLFATGHWMRLIPTDPQTPQHMVSTALQYLSLQWPEHDGWLHYNALQMVTYAGVV
+FVLAPLAALTGFRMSSWWPSRNTALSRGFPMELARRLHYPTMLAFVLFVVVHVVLVLFSGVLHELNAMFLARNAA-DAWG
+LAAFLVGCAVIAAGWVLLKPAIVAPVAERFGRVSR
+>SA211_MHAAABBN_02253
+MPKQRMAGYVPLKGAPAETEPAPAPGQDTTTAAPASAAAAVPVAPTAPTSGLTPLSARRRMAGYVPFAREAEWLGGAPAP
+AAGSIPAAAPARSVAPEPIAASASPTRAPAPAETEPVVPDVAAVVASATGAPAAAGVGAPVESDLVPLAKRRRMVGYVPF
+AREGEWFTELAAVGGPTAPETAAQEV---------------VAEPATAEPAAA-------------EPADAEPAVAAPVA
+AA--PAAEPAPTAPDTRSAPPASTAQPPRAAPGAATGTPARAA-ETDAAESA-APSRLRKALPAVAGVVVLALLAVLAGR
+GLRSLDPVADFIATYDGHPVLPEGTPEGMPWWMGWQHFLNMFLMVLIIRTGLQIRHETRPPANFTPTKDGLFSARGNTPK
+KFSLTIWMHQALDALWLLNGVIFVVLLIVTGHWARIVPTDPHVFQHAVSAGIQYLSLDWPTENGWVHYNALQMLSYSLVV
+FVAAPLAALTGWRMSSWFPTKATGLNKAFPMEVARKVHFPVMVFFVAFILVHVFLVAFTGLLTNLNHMYTSRGGATDAWG
+LVVFLVSVAVTAAAWFFLKPAFTAPVASRFGTVGR
+>TT9_LFPAFLNI_00241
+MPKQRMAGYVPLKGAPAETEPAPAPAQDTTTAAPASAAAAVPVAPTAPTSGLTPLSARRRMAGYVPFAREAEWLGGAPAP
+AAGSIPAAAPARSVAPEPIAASASPTRAPAPAETEPVVPDVAAVVASATGAPAAAGVGAPVESDLVPLAKRRRMAGYVPF
+AREGEWFTELAAVGGPTAPEMVAQEV---------------VAEPATAEPAAA-------------EPADAEPAVAAPVA
+AA--PAAEPAPTAPDTRSAPPASTAQPPRAVPGAATGTPARAA-ETDAAESA-APSRLRKALPAVAGVVVLALLAVLAGR
+WLRSLDPVADFIATYDGHPVLPEGTPEGMPWWMGWQHFLNMFLMVLIIRTGLQIRHETRPPANFTPTKDGLFSARGNTPK
+KFSLTIWTHQALDALWLLNGVIFVVLLIVTGHWARIVPTDPHVFQHALSAGIQYLSLDWPTENGWVHYNALQMLSYALVV
+FVAAPLAALTGWRMSSWFPTEAKGLNKAFPMEVARKVHFPVMVFFVAFIVVHVFLVAFTGLLTNLNHMYTSRGGATDAWG
+LVVFLVSVAVTAAAWFFLKPAFTAPVASRFGTVGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000236.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000236.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e31fb470a064c924f88426ea5c0da56fc9b59e2b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000236.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00133
+MKILVLAKQVPDTWQERELSLDTGWVVRDGAAEPVPDEISERVMEVALGWRDAGTDAEIV
+ALTVGPEDSSKTLRKMLAMGADAAVQVTDDALVGSDAVETARVIAAAVEREGADLVLAGT
+VSTDGGTGVVPAMVAELLDRPYLPHAEAPQLADGELTGTVATSDADVRAAVALPAVAGLT
+EKTAEPRFPNFKNIMAAKKKPLTVLSLADLGIAAGPAEAAYRSVMVSADTRPERAAGAKV
+SDDGTAAQQLVDFLAGRGLV
+>KBS0714_MOLHKGIG_00238
+MKILVLAKQVPDTWQERELSLETGWVVRDGAAEPVPDEISERVMEVALGWRDAGADIEVV
+ALTVGPEDSSKTLRKMLAMGADSAVQITDDALVGSDAVQTARVIAAAVEKEGADLVLAGT
+VSTDGGTGVVPAMVAELLERPYLPHAEAPELADGELIGTVATSDADVRAAVALPAVASLT
+EKTAEPRFPNFKNIMAAKKKPLTVLSLADLGIAAGPAEAAYRSVMVSADTRPERAAGEKI
+TDDGTAAERLVEFLAGRGLV
+>KD337_NAFOICDF_00098
+MKIAVLAKQVPDTWQERTLDMETGMAVRDGAAEPVPDEIGERVMEVALAAREAGLEAEIV
+AVTMGPADATKTLRKMLAMGADSAVHVVDDALDWSDAVQTARVLAAAVEHLGVDLVLAGS
+ESTDGATGVVPAMVAELLDRPLLPSVEAVEITPEEVRGVLVTEDARLRASVPVPAVVALT
+EKTAEPRFPNFKSIMAAKKKPLETLTLADLGLTAGPLDADRRSVMVSAAARRERAAGEKI
+VDDGTAGEQVAAFLAARGLV
+>SA211_MHAAABBN_02251
+MKILVLAKQVPDTWQERELSLETGWVVRDGAAEPVPDEISERVMEVALGWRDAGADIEVV
+ALTVGPEDSSKTLRKMLAMGADSAVQITDDALVGSDAVQTARVIAAAVEKEGADLVLAGT
+LSTDGGTGVVPAMVAELLERPYLPHAEAPELADGELTGTVATSDADVRAAVALPAVAGLT
+EKTAEPRFPNFKNIMAAKKKPLTVLSLADLGIAAGPAEAAYRSVMVSADTRPERAAGEKV
+TDDGTAAERLVEFLAGRGLV
+>TT9_LFPAFLNI_00239
+MKILVLAKQVPDTWQERELSLETGWVVRDGAAEPVPDEISERVMEVALGWRDAGADIEVV
+ALTVGPEDSSKTLRKMLAMGADSAVQITDDALVGSDAVQTARVIAAAVEKEGADLVLAGT
+LSTDGGTGVVPAMVAELLERPYLPHAEAPELADGELTGTVATSDADVRAAVALPAVAGLT
+EKTAEPRFPNFKNIMAAKKKPLTVLSLADLGIAAGPAEAAYRSVMVSADTRPERAAGEKV
+TDDGTAAERLVEFLAGRGLV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000237.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000237.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8cfda37b66f88121ac373cedddfbcecfca7ba4e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000237.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00134
+MSPAA-PSADPADGDRPDVPAVPASSLMLVRPEQDGDTSVFALRRAGSMAFSAHATAFPG
+GRVDPADD-LPDALWEGTDLAAWGRRLGLPHEPVDALGTLAALDPAEGAGRVLAAAVRET
+FEETGVLLARDTATGAPVDPDRVAALPEDLRDAVERHEVDFGDLLRDEGLRPDAGALVPW
+SRWITPHGGPRRYDTFFFAVHLPAGQSPERMSSEAAEHGWASPAELLRRFRAGEVNLMAP
+TWWQLRTLDDAGEDVHAGR--SRFEPLEGVMLVAGQGP-----AFSHADEYLRDLAAFRA
+AAHVEESKDNIL
+>KBS0714_MOLHKGIG_00237
+MSPAAPPTAPPAAEDRPRVPAVPASSLVLVRPGAGGEISVFTVRRAGTMAFSAHATAFPG
+GRVDPADD-LSDRLWEGTDLADWGRRLGLPHEPADAHGTLAELDPAEGAGRVLAAAVRET
+FEETGVLLARDAVTGTPVDPARVAAFPDELRDAVERHEVDFGELLDREGLRPDAGALVPW
+SRWITPHGGPRRYDTFFFAVHLPQGQSPERMSSEAASHGWASPAELLRRFRVGKVNLMAP
+TWWQLRTLVDAGEDVHAGR--SRFEPLEGVMLVAGQGP-----VFPHADEYLRDLTAFRA
+AAQVEESKDNIL
+>KD337_NAFOICDF_00099
+MD-AA-QTSSSETLPVEATPARAAASLLLLRDGAAG-LEVFHVHRAGTMAFSAHATAFPG
+GRVDPSDDALP---VPGADLAAWARRLGLEDRPVE---TQPEDDPARVAARFLAAVVRET
+FEETGVLLAR-AADGGPVPPEAAAALAGR-REDVEAHAADLGALLAEHGLAADVSGLRAW
+QRWITPLSVPRRYDTAFFLVAVPAGQDPDRLTTEATEHGWARPADLITAFQAGDVNLMAP
+QWAQLRALMDLPDVEAALRAGAAAEPVPVVQLASEASPEERTREFSHAAEYREHLRSFRT
+HDRVQDTPDNVL
+>SA211_MHAAABBN_02250
+MSPAAPPTAPPAAEDRPRVPAVPASSLVLVRPGAGGETSVFTVRRAGTMAFSAHATAFPG
+GRVDPADD-LPDRLWEGTDLADWGRRLGLPHEPVDAHGTLTELDPAEGAGRVLAAAVRET
+FEETGVLLARDAVTGTPVDPARVAAFPDELRDAVERHEVDFGELLDREGLRPDAGALVPW
+SRWITPHGGPRRYDTFFFAVHLPHGQSPERMSSEAASHGWASPAELLRRFRAGEVNLMAP
+TWWQLRTLVDAGEDIHAGR--SRFEPLEGVMLVAGQGP-----VFPHADEYLRDLMAFRA
+AAQVEESKDNIL
+>TT9_LFPAFLNI_00238
+MSPAAPPAEPSAAEDRPRVPAVPASSLVLVRPGAGGEISVFTVRRAGTMAFSAHATAFPG
+GRVDPADD-LPDRLWEGTDLAEWGRRLGLPHEPVDAHGTLTELDPAEGAGRVLAAAVRET
+FEETGVLLARDAVTGTPVDPARVAAFPDELRDAVERHEVDFGELLDREGLRPDAGALVPW
+SRWITPHGGPRRYDTFFFAVHLPQGQSPERMSSEAASHGWASPAELLRRFRAGKVNLMAP
+TWWQLRTLVDAGEDIHAGR--SRFEPLEGVMLVAGQGP-----VFPHADEYLRDLTAFRA
+AAQVEESKDNIL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000242.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000242.fa
new file mode 100644
index 0000000000000000000000000000000000000000..aec99752d71bb44015eac99facc5aa40e688f0b2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000242.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00147
+MSTPSPIGLLLDVDGPVASTQTRTVPDGIVATLVRLAGRGVPVGFNTGRSADFLLHSVIG
+PLRAAGLPADAPFFAVCEKGAVWFPFSAVPAGTLPEVTVDAPAPAWVRTDPAMALDPGLR
+ERIWELNRERAGDLQFVDRTKLAMVSLEMRVGADQAAYEAVRDDVAAGVEEMLAERGLAD
+EVRVDPTVISVDVEHRSSGKDLGVDRCRALMAEAGVPVPGRWFTAGDSRTDYAMADRLHA
+IGLAVEHLDVRPADGIPATPYPVLTAADLAGRGVGNAEDVHERAGESLLRWVERDLLD
+>KBS0714_MOLHKGIG_00232
+MRTSSPIGLLLDVDAPVASTETRTVPEGIIDVLVRLARRGVPVGFNTGRSTDFLLHNLIA
+PLRDAGLPDDAPFHAICEKGAVWFPFSAVPSGDLPDVTVDGTAPDWLRTDPDMAIDADTR
+DAIWALNDERAGDLQFTDRTKLAMVSLEKTVGADQTEYERVRDDVAAGVEDLLAERGLAE
+EVRVAPSVISVDVEHRSSGKDLGVERCFDLLAEAGTPVPERWLTAGDSRSDYAMADRLHE
+RGLAVEHMDVRPADGVPEKPYGVVTAAILAERGIGDADDVHERAGESLLRWVERDLLR
+>KD337_NAFOICDF_00105
+MTSPSPIGLLLDVDGPVASTETRAVPEGIVTTLVRLAAARVPVGFNTGRSADFLLHSVIG
+PLRAAGLPEDAPFFAICEKGAVWFPFSDVPAGDLPAVTVDAPTPGWVRTDPAMAVDADVR
+DAIWEINGERAGDLQFVDRTKLLMVSLEKTVGADQDAYVQVRDDVAAGIEDLLRERGLAE
+DVRVDPTVISIDVEHRTSGKDLGVDRCLGMLAEVGVAVPERWFTAGDSRTDYAMADALHA
+MGAPVEHMDVRPADGIPERPYRVLTAADLAERGVGQAEDVHERAGESLLRWVERDLLA
+>SA211_MHAAABBN_02245
+MRTSSPIGLLLDVDAPVASTETRTVPEGIIDVLVRLARRGVPVGFNTGRSTDFLLHNLIA
+PLRDAGLPDDAPFHAICEKGAVWFPFSAVPSGDLPDVTVDGTAPDWLRTDPDMAIDADTR
+DAIWALNDERAGDLQFTDHTKLAMVSLEKTVGADQTEYERVRDDVAARVEDLLAERGLAE
+EVRVAPSVISVDVEHRSSGKDLGVERCFDLLAEAGTPVPERWLTAGDSRSDYAMADRLHE
+RGLAVEHMDVRPADGVPEKPYGVVTAAILAERGIGDADDVHERAGESLLRWVERDLLR
+>TT9_LFPAFLNI_00233
+MRTPSPIGLLLDVDGPVASTETRTVPEGIIDVLVRLARRGVPVGFNTGRSTDFLLHSVIA
+PLRDAGLPDDAPFHAVCEKGAVWFPFSAVPSGDLPDVTVDGTAPDWLRTDPDMAIDADTR
+DAIWALNDERAGDLQFTDHTKLAMVSLEKTVGADQTEYERVRDDVAAGVEGLLAERGLAE
+EVRVAPSVISVDVEHRSSGKDLGVERCFDLLAEAGTPVPERWLTAGDSRSDYAMADRLHE
+RGLTVEHMDVRPADGVPEKPYGVVTAAILAERGIGDAEDVHERAGESLLRWVERDLLR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000246.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000246.fa
new file mode 100644
index 0000000000000000000000000000000000000000..73e8990038f1f56433e8a1ac3cfee684020e997b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000246.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00153
+MPAGRYAPSPTGALHLGNLRTAIVAWLAARATDRTFLLRVEDLDRVRSGAEAAQLSELAA
+VGLDWDAEPVRQSERTGLYDDAVAALRAAHGADAVYECFCSRKDIAEATSAPHPAPADDD
+GAPGPAGAAPLRPPGFYPGTCRGLTAAQRAERRRVRPAALRIDAVQVAGLPEGEIPRAEA
+VDLLHGEVTGLVDDLVLRRNDGAYAYNLAVVVDDLAQGVDQVVRGDDLLDSTPRQRWLAA
+ALCAARGEALPQTSYLHVPLVLNAEGRRLAKRDGAVTLEDLAAADPSWTPERVRDRLLSS
+LGLPPGPPADAVPAFARMLEDGSLPREPWMFDPAAFAGA
+>KBS0714_MOLHKGIG_00228
+MPAGRYAPSPTGSLHLGNLRTALVAWLAARATNRAFLLRVEDLDRVRSGAEADQRADLAA
+VGLDWDAEPVRQSERTALYDAAVAALRAVHGPDAVYECFCSRKDIAEATSAPHPRP--DD
+GAPASGGAVPLRPPGFYPGTCRGLTEAERAERRRVRPAALRIDVAKVAGLPAGETPRATA
+VDVLHGEVTGLVDDLVLRRNDGAYAYNLAVVVDDLAQGVDQVVRGDDLLDSAPRQRWLAE
+ALCAARGEPTPAVEYLHVPLVLNAEGRRLAKRDGAVTLEDLSAQDPAWTPERVRDRLLES
+LGLPAGPLAAAVPAF----DPAALPRVPWVF-----TGL
+>KD337_NAFOICDF_00110
+MPAGRYAPSPTGTLHLGNLRTALVAWLAARATGRTFLLRIEDLDRVCSGAEAGQLADLAA
+VGLDWDGEPVHQSERTALYDAAVAALRAAHGADAVYECFCSRKDIAEATSAPHPRP--DD
+GAPASGGTVPLRPPGFYPGTCRGLTEAERAERRRVRPAALRIDAAKVAGLPAGEIPRATA
+VDVLHGEVTGLVDDLVLRRNDGAYAYNLAVVVDDLAQGVDQVVRGDDLLDSAPRQRWLAE
+ALCVARGEPTPAVEYLHVPLVLNAEGRRLAKRDGAVTLGDLAAQDPAWTPARLRDRLLES
+LGLPAGPLAVAVRAF----DPAALPRDPWVF-----TGL
+>SA211_MHAAABBN_02241
+MPAGRYAPSPTGSLHLGNLRTALVAWLAARATDRAFLLRIEDLDRVRSGAEAGQRADLAA
+VGLDWDAEPVRQSERTALYDAAVAALRAAHGADAVYECFCSRKDIAEATSAPHPRP--DD
+GAPASGGAVPLRPPGFYPGTCRGLTEAERAERRRVRPAALRIDAAKVAGLPAGEIPRATA
+VDVLHGEVTGLVDDLVLRRNDGAYAYNLAVVVDDLAQGVDQVVRGDDLLDSAPRQRWLAE
+ALCDGRGEPTPAVEYLHVPLVLNAEGRRLAKRDGAVTLEDLAAQDPAWTPERVRDRLLES
+LGLPAGPLAAAVPAF----DPAALPRDPWVF-----TGL
+>TT9_LFPAFLNI_00229
+MPAGRYAPSPTGSLHLGNLRTALVAWLAARATDRAFLLRVEDLDRVRSGAEAGQRADLAA
+VGLDWDAEPVRQSERTALYDAAVAALRAAHGADAVYECFCSRKDIAEATSAPHPRP--DD
+GAPASGGTVPLRPPGFYPGTCRGLTEAERAERRRVRPAALRIDVAKVAGLPAGEIPRATA
+VDVLHGEVTGLVDDLVLRRNDGAYAYNLAVVVDDLAQGVDQVVRGDDLLDSAPRQRWLAE
+ALCSARGEPTPAVEYLHVPLVLNAAGRRLAKRDGAVTLEDLAAQDPAWTPERVRDRLLES
+LDLPPGPLAAAVPAF----DPAALPRDPWVF-----TGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000249.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000249.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8fdf6fbe924ed0f3577f21cccacb62d654dd3034
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000249.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00156
+MSTVVADPTRQGPP---PLRPPGGGRLSTASAVRTVVGMELRQRLRSRGWYVLLGVFFLV
+VGAVTLGALGLRATTLGDLQSQGMDPAAAEVQMRSAGQWLFDGVLLFVLTLSLLVSPVLA
+ANAISGDRAGGTLAITQVTLLRTGQLMAGKWIAAWIASAAFLVAALPWLAVAAVVGRVSP
+LFVLVGLLMILVEFGVITGIGVAVSAIAGRTLFAVVVTYLIVAALSIGTLVAFVLSLQFL
+QTDVRANMPEHDGMTMADPLEGQDVENMTQAEIDAAWAEWERQNPDAYDGIADACVGPVG
+VQSVPDPRRVGWLLAANPYAVLADASPWDPTGASMQFTPETGPLNMMSAALRLTQQDPAE
+TTECLDGQLRRIDTTSVP----DREGTWPVWPLGLAMQAALTGGLLWWGHRRLDTPAGRL
+PAGTRVA
+>KBS0714_MOLHKGIG_00224
+MSTAVATSIHDRRP---P-QPQPGGRLGAAQAVATVVGMELRQRLRSRGWYVLLGVFFVV
+VGAVTLGALGLRGLGVAEMEASGLEPELAEQQMRALGRTLFDGVLLFVLTLSLLVSPALA
+ANAISGDRAGGTLAITQVTLLRTGHLMAGKWLAAWIASAAFPAAALPWLAVAAVVGRVSP
+WAVLVGLVMILVEFGMIAGIGVAVSAIAGRTLFAVVVTYLIVAALTIGTLVAFGLSLQFL
+QTEVRANEADYGSTT-AEPFTEAELEKMTPEEAEQAWAEWEAAHPELYDGIADRCVGPVT
+TRTIPDPRRSGWLLAANPYAVLADASPWEGGLLEDGTRAEPGPLNLLSVGLRWTQRDPVR
+DVECLDGELRGLDQSGVP----DRQGTWPVWPLGLAMQGVLVAGLGWWGHRRLDTPAGRL
+PAGTRVA
+>KD337_NAFOICDF_00114
+MSAVLHTPPPAAAPAGGP-TPLGSGRLGVVDALRTLVGMELRQRLRSRGWYILLGVFFLL
+VGGVTLGALGLHAW------TGGNSPD----STMVFGRWLYDGVLLFVLTLCLLVSPALS
+ANAISGDRSAGTLAITQVTLVSTWQLMLGKWLAAWIAAVAFLVAAAPWLIVAAVVGQVPP
+LAVLAGLAMILVEFAVVTGIGVAVSAITGRTLFAVVVTYLLVAMMTIGSLIAFTISLQFI
+ETRLQTNQVTYG------------------------YAE------DA--GSTKSCAGPLR
+DTTVPDPRRVAWLLAGNPYVVVADAVPL-PELREDSAGEEFGALNLISLGMRVAQIDPRE
+YTDCVDGQVNEGSVTDSPVTLVDR--TWPTWPLGMLLQGGFLAALLWWGRRRLDTPAGRL
+PTGTRVA
+>SA211_MHAAABBN_02237
+MSTAVATSIHDRRP---P-QPQPGGRLGAAQAVATVVGMELRQRLRSRGWYVLLGVFFVV
+VGAVTLGALGLRGLGVAEMEASGLEPELAEQQMRALGRTLFDGVLLFVLTLSLLVSPALA
+ANAISGDRAGGTLAITQVTLLRTGHLMTGKWLAAWIASAAFLAAALPWLAVAAVVGRVSP
+WAVLVGLVMILVEFGMIAGIGVAVSAIAGRTLFAVVVTYLIVAALTIGTLVAFGLSLQFL
+QTEVRANDAEYGSMT-AEPFTEAELEKMTPEEAEQAWAEWEAAHPELYDGIADRCVGPVT
+TRTIPDPRRSGWLLAANPYAVLADASPWEGGLLEDGTRAEPGPLNLLSVGLRWTQRDPVR
+DVECLDGELRGLDSTGVP----DRQGTWPVWPLGLAMQGVLVAGLGWWGHRRLDTPAGRL
+PAGTRVA
+>TT9_LFPAFLNI_00225
+MSTAVATSIHDRRP---P-QPQPGGRLGAAQAVATVVGMELRQRLRSRGWYVLLGVFFVV
+VGAVTLGALGLRSLGVTEMEASGLEPELAEQQMRALGRTLFDGVLLFVLTLSLLVSPALA
+ANAISGDRAGGTLAITQVTLLRTGHLMAGKWLAAWIASAAFLAAALPWLAVAAVVGRVSP
+WAVLVGLVMILVEFGMIAGIGVAVSAIAGRTLFAVVVTYLIVAALTIGTLVAFGLSLQFL
+QTEVRANDAEFGSMT-AEPFTEAELEKMTPEEADQAWAEWEAANPELFDGIADRCVGPVT
+TRTIPDPRRSGWLLAANPYAVLADASPWEGGLVEDGTWAEPGPLNLLSVGLRWTQRDPVR
+DVECLDGELRGLDQSGVP----DRQGTWPVWPLGLAMQGVLVAGLGWWGHRRLDTPAGRL
+PAGTRVA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000250.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000250.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a67e82c70b43f942a4240478a00a44fe5b7aaab3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000250.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00158
+MSLIVQKFGGSSVADAAGIQRVARRVADTVRAGHRVCVVVSAMGDTTDELLDLAAELTQD
+APAREMDILLSAGERISMSLLAMAIHAEGVEARSYTGSQAGMMTDTSYGRARIVKVNPHR
+VQEALDAGGVAIVAGFQGVSPESKDITTMGRGGSDTTAVALAAALGADVCEIYTDVDGVY
+SADPRVVPSARKLTELSSEETLEMAASGSKVLHLRSVEYARRFGVPIHVRSSFSDHEGTW
+IMPDPNDTITLKEGAPMEQPIVSGVAHDRSEGKVTIVGVPDVPGKAAEIFRVIAESNVNI
+DMIVQNVSREGSGTTDISFTLPIVEGKDAMAALRAAQERIGFQDIVSDKEIGKLSLIGAG
+MRSNPGVSATFFKALSDAGVNVDLISTSEIRISVVTAEDKLDDAVRAVHTAFGLDAEEEA
+TVYGGTGR
+>KBS0714_MOLHKGIG_00222
+MSLIVQKFGGSSVADAAGIQRVARRIADTVRAGNRVCVVVSAMGDTTDELLDLAAELTQD
+APAREMDILLSAGERISMSLLAMAIHAEGVEARSYTGSQAGMLTDTSYGRARIVKVNPHR
+VQEALDAGRVAIVAGFQGMSPESKDITTMGRGGSDTTAVALAAALGADVCEIYTDVDGVY
+SADPRVVPTARKLTELSSEETLEMAASGSKVLHLRSVEYARRFGVPLHVRSSFSDHEGTW
+IMPDPNDTITLQEGAPMEQPIVSGVAHDRSEGKVTIVGVPDVPGKAAEIFRVIAVSNVNI
+DMIVQNISREGSGRTDISFTLPIVEGKDAMAALRAAQDRIGFQDIVSDPEIGKLSLIGAG
+MRSNPGVSATFFKALADAGVNVDLISTSEIRISVVTAESKLDDAVRAVHAAFGLDAEEEA
+TVYGGTGR
+>KD337_NAFOICDF_00116
+MRLIVQKFGGSSVADAEGIQRVARRIVATQQAGNQVCVVVSAMGDTTDELLDLAAELTAD
+APAREMDILLSAGERISMSLLAMAIDAQGVPARSFTGSQAGMMTDAAYGRARIIEVNPHR
+VRAALDEGAVAIVAGFQGMSRESKDITTMGRGGSDTTAVALAAALGADVCEIYTDVDGVY
+SADPRVVSSARKLPQLSSEETLELAASGAKVLHLRSVEYARRFGVPIHVRSSFSDHEGSW
+IMPDPNDTIHLKEGAPMEQPIVAGVAHDRSEAKVTIVGVPDVPGKAAEIFRVIAESNVNI
+DMIVQNVSRQDSGRTDISFTLPIVEGKAAIEALRAAQESIGFEEIVPNKEIGKLSLIGAG
+MRSNPGISATFFKALSDAGVNVDLISTSEIRISVVTSEDKLDDAVRAVHTAFGLDTDVEA
+TVYGGTGR
+>SA211_MHAAABBN_02235
+MSLIVQKFGGSSVADAAGIQRVARRIADTVRAGNRVCVVVSAMGDTTDELLDLAAELTQD
+APAREMDILLSAGERISMSLLAMAIHAEGVEARSYTGSQAGMLTDTSYGRARIVKVNPHR
+VQEALDAGRVAIVAGFQGMSPESKDITTMGRGGSDTTAVALAAALGADVCEIYTDVDGVY
+SADPRVVPTARKLTELSSEETLEMAASGSKVLHLRSVEYARRFGVPLHVRSSFSDHEGTW
+IMPDPNDTITLQEGAPMEQPIVSGVAHDRSEGKVTIVGVPDVPGKAAEIFRVIAVSNVNI
+DMIVQNISREGSGRTDISFTLPIVEGKDAMAALRAAQDRIGFQDIVSDPEIGKLSLIGAG
+MRSNPGVSATFFKALADAGVNVDLISTSEIRISVVTAESKLDDAVRAVHAAFGLDAEEEA
+TVYGGTGR
+>TT9_LFPAFLNI_00223
+MSLIVQKFGGSSVADAAGIQRVARRVADTVRAGNRVCVVVSAMGDTTDELLDLAAELTQD
+APAREMDILLSAGERISMSLLAMAIHAEGVEARSYTGSQAGMLTDTSYGRARIVKVNPHR
+VQEALDAGRVAIVAGFQGMSPESKDITTMGRGGSDTTAVALAAALGADVCEIYTDVDGVY
+SADPRVVPTARKLTELSSEETLEMAASGSKVLHLRSVEYARRFGVPLHVRSSFSDHEGTW
+IMPDPNDTITLQEGAPMEQPIVSGVAHDRSEGKVTIVGVPDVPGKAAEIFRVIAVSNVNI
+DMIVQNISREGSGRTDISFTLPIVEGKDAMAALRAAQDRIGFQDIVSDPEIGKLSLIGAG
+MRSNPGVSATFFKALADAGVNVDLISTSEIRISVVTAEDKLDDAVRAVHAAFGLDAEEEA
+TVYGGTGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000253.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000253.fa
new file mode 100644
index 0000000000000000000000000000000000000000..145ae3f2fb9179ebc8f2771b27fe6e3ca7b39817
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000253.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00169
+MTD-PCPCGAGLPLAECCGRLHARFAADGALTAPTAEALMRSRYAAFALLGEAGADDDGT
+QGTDGASGPGGTGPGHAGPGHAGPDRARAMAAYLAATWAPEHRPAVEDLLPEAGERAPRF
+TRLAVTDVRDGGPFQDRGIVEFTALGHGEEGRFRLRERSRFRREDGAWLYVDGDVA-
+>KBS0714_MOLHKGIG_00214
+---------------------------------------MRSRYTAFARLGE--------
+---------------------AGPAEAQAMADYLAATWAPEHRPPAAELLPAAGEQAPRF
+TRLAVLDVRDGGPFQDAGTVEFVAVGAGAEGRFRLHEVSRFRREDGVWRYVDGDVR-
+>KD337_NAFOICDF_00120
+MTEAPCPCGLGLPYPECCGRLHAAHAADGSLTAPTAEALMRSRYTAFARLGEV-------
+----------------EGAGATGAADVAATVAYLRATWAPEHRPSTAELTPGPGDPAPAF
+TRLAVLAVEGGGPFQDVGEVEFAAVGRGPEGRFRLHERSRFRRESGVWLYVDGDVTA
+>SA211_MHAAABBN_02207
+---------------------------------------MRSRYTAFARLGE--------
+---------------------AGPAEARAMADYLAATWVPEHRPTAAELLPTEGEQAPRF
+TRLAVLDVRDGGPFQDAGTVEFVAVGTGAEGRFRLHEVSRFRREDGIWRYVDGDVR-
+>TT9_LFPAFLNI_00214
+---------------------------------------MRSRYTAFARLGE--------
+---------------------AGPAEVRAMADYLAATWAPEHRPTAAELLPAAGEPAPRF
+TRLAVLDVRDGGPFQDAGTVEFVAVGTGAEGRFRLHEVSRFRREDGIWRYVNGDVR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000254.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000254.fa
new file mode 100644
index 0000000000000000000000000000000000000000..46f98f8f52a624eb8c62d424c26632254174275d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000254.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00172
+MDDAPDPRLAPLRHDGH-LLPGHGPLLRAAPGAPTRARKALARLWAQGVLVRLGAGLYVP
+LAHWCALAPWDRYTLACAGYALLHPAARFTGTTAAHLHGLPLAQTPPEIRLRSPAPGHRA
+RRPLAASAFSDLADARGRRLPAPPAVRWTWNGVQAPADDGGELRRRRLASGGPEGEAPPP
+GPLPPVTVEAALSDGTLLGPVTVDALPTVQLALGSGPVFREAVVPLDGLRRRLPGPSAAW
+AERHADRLPTRAARERFERAWGFSDPRAESAGESLSRALIHELGFAAP-HLQRTVFGRDG
+RAIGRTDFWWEEVDVVGEFDGIGKYDVDLH-ASAAERRQAITREKEREVALRRVCRDVAR
+WTWADLREPAGLEAELVRAGVPR-----------------RR
+>AS2_ACLBLIBL_02563
+--------MTALADVAD-LRPGTGPLLHVARREDLAARRRLERAWTRGDLVRLAAGVYLP
+APTWTALSPWDRSTASAAALALARPATVFTGLTAARLRGLPVALELPALDLRATSPGHRG
+AAPLTSRPFSPALLATGGRLPRPP--------------------RRRPRWGLP--QAPGM
+APEP---VEIRLSDGTGLGWGLADASATLLLVLGAATPFRNAVAPLDVLLATHP-EAQSW
+AQAAEEALPTRAARERFERTWSFAAAGSESAGESYSRALMHELGFASPTALQHRHRDATG
+REVARTDFWWADARVAGEFDGIGKYDLGLHRGDDAARRASIRREKEREVALQLVTRAVAH
+WTWEDLRAPERLARILTAAGVPRTVCPEPTDAQRHHRRAERR
+>KBS0714_MOLHKGIG_00393
+--------MTLLSDHSRALLPGRGPLLCAADPHDGAARRRLERAWTRGVLVRLCPRVYIS
+VSDWAALRPWDRTVVSAVALSIARPETVFTGLTAARLHGLGPAVEPPALELRAPSPGHHG
+AGPLTRRPFAPSLMAHDRRPPGLP--------------------RRRPRWGLP--EADPA
+APQR---VEAVLSDGQSLGTVLADPLPTVLLVLGAATPFRDAVATLDALVRARPEEAARW
+ARQAESRLGSAAALRRFERAWHFADARAESAGESYSRAIVHELGFVPPTALQHRHRDANG
+REVARTDFWWEQVRVYGEFDGLGKYDLSFFDGDDTARRASIRREKEREVALQLVTRAGAH
+WTWGDLLRPDRLARILTAAGVPRSV-----------------
+>SA211_MHAAABBN_00117
+--------MTPLSDHSRALLPGRGPLLSAADPHDGAARRRLERAWTRGVLVRLSPRVYIS
+VSDWAALRPWDRAVVSAVALSIARPATVFTGLTAARLHGLGPAVEPPALELRAPSPGHHG
+CGPLTRRPLAPSLVAHDRRLPVPP--------------------RRRPRWGLP--EAAPT
+GPQP---VEAVLSDGQSLGTVLADPLPTVLLVLGAATPFRDAVAPLDALVRAWPEEAARW
+ARQAESRLGSAAALRRFERAWHFADARAESAGESYSRAIIHELGFVPPTALQHRHRDANG
+RGVARTDFWWEQVRVYGEFDGLGKYDLSFFDGDDTARRASIRREKEREVALQLVTRAGAH
+WTWGDLLRPDRLARILTAAGVPRSV-----------------
+>TT9_LFPAFLNI_00399
+--------MTLLSDHSRALLPGRGPLLSAADPHDGAARRRLERAWTRGVLVRLCPRVYIS
+VSDWAALRPWDRAVVSAVALSIARPATVFTGLTAARLHGLGPAVEPPVLELRAPSPGHHG
+AGPLTRRPLAPSVVAHDRRLPVPP--------------------RRRPRWGLP--EAAPA
+APQP---VEAILSDGQSLGTVLADPLPTVLLVLGAATPFRDAVAPLDALVRARPEEAARW
+ARQAESRLKSAAALRRFERAWHFADARAESAGESYSRASIHELGFVPPTALQHRHRDANG
+REVARTDFWWEQVRVYGEFDGLGKYDLSFFDGDDTARRASIRREKEREVALQLVTRAGAH
+WTWGDLLRPDRLARILTAAGVPRSV-----------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000257.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000257.fa
new file mode 100644
index 0000000000000000000000000000000000000000..88d493d6b376d0da27a7af0126cdc491c9ddad08
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000257.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00175
+MSQQFSIETVADAAANPDIEQPWAELGLKENEYAQIREILGRRPTAAELAMYSVMWSEHCSYKSSKVHLRQFGEKLTDEM
+KQHMMVGIGENAGVTDLGDGWAVTFKVESHNSPSYVEPYQGAATGIGGIVRDIISMGARPVAVMDPLRFGAIDHPDTARV
+FHGVVAGIGGYGNSLGLPNIGGETRFDPIYQGNPLVNALAVGVLKHEDLRLANASGLGNKVVLFGARTGGDGIGGASVLA
+SESFDGDGKPAKRPSVQVGDPFSEKVLIECCLELFAGSLVEGIQDLGAAGISCATSELASNGEGGMRVELTDVLLRDSTL
+TPGEILMSESQERMMAVVTPDNVAAFEAVMAKWDVEYSWLGEVTGDGRLVITWDGEVIVDVDPRTVAHDGPVYERPYARP
+GWQDRVQADTFRASEAGADLPATGEELRAAVVELMSSPNLADTSWITRQYDRYVRGNTAMAAPDDAGVVRVDEETGMGVA
+LATDCNDRFTYLDPYTGAQASLAEAYRNVTTAGAVPLAVSDCLNFGSPENPDVMWQFAEAVRGLADGCQVLGIPVTGGNV
+SLYNQTGATPIHPTPTVAVLGQLDDVLRRTPSGFAPDADGQAIYLLGETADELDGSEFARLRGHLGGVPPKVDLAKERLL
+GELLVNMSRDGMIDAAHDVSGGGLAATLSEMVLRHGVGARVVLDEVLRRDGVDLFTALFSETQARAVVAVPRTEEVRFTD
+MTTARGYTVTRIGVVDADSAALEVQDAFTLPIAELREGWEATLPKHFG
+>KBS0714_MOLHKGIG_00211
+MSQQFNIETVADAQATPDVEQPWAELGLKENEYAEIKKILGRRPTAAELAMYSVMWSEHCSYKSSKVHLRQFGEKLTDEM
+KQHMMVGIGENAGVTDLGDGWAVTFKVESHNSPSYVEPYQGAATGIGGIVRDIISMGARPVAVMDPLRFGAIDHPDTARV
+FHGVVAGIGGYGNSLGLPNIGGETRFDPIYQGNPLVNALAVGVLKHEDLRLANASGVGNKVVLFGARTGGDGIGGASVLA
+SESFDGDGKPAKRPSVQVGDPFSEKVLIECCLELFRDSLVEGIQDLGAAGISCATSELASNGEGGMRVELTDVLLRDSTL
+TPGEILMSESQERMMAVVTPENVAAFEAVMAKWDVEYSWLGEVTGDGRLIITWDGEVIVDVDPRTVAHDGPVYERPYARP
+AWQDELQADTFRSSEAGQDLPATGEELRAAVVELMSSPNLADTSWITRQYDRYVRGNTALAAPDDAGVVRVDEETGIGVA
+LATDCNDRFTYLDPYTGAQASLAEAYRNVTTAGAVPLAVSDCLNFGSPEDPDVMWQFAEAVRGLADGCQTLGIPVTGGNV
+SLYNQTGSTPIHPTPTVAVLGQLDDVLRRTPSGFAPDADGQAIYLLGETADELDGSEFARLRGHLGGLPPKVDLKKERLL
+GELLVNMSRDGMIDAAHDVSGGGLAATLSEMVLRFGVGARVVLDEVLRRAGVDLFTALFSETQARAVVAVPRTEEVRFTD
+MTTARGYAAVRIGVVDADSAALEVQDAFTLPIAELREAWEATLPKHFG
+>KD337_NAFOICDF_00124
+MSTQFTIETVEQAAANPDVAQPWAELGLKEDEYARIREILGRRPTAAELAMYSVMWSEHCSYKSSKVHLRQFGDTLTEEM
+KEHMMVGIGENAGVTDLGDGWAVTFKVESHNHPSFVEPYQGAATGIGGIVRDIISMGARPVAVMDPLRFGAVDHPDTARV
+VHGVVAGIGGYGNSLGLPNIGGEVAFDPSYQGNPLVNALAVGVLRHEDLRLANASGVGNKVVLFGARTGGDGIGGASVLA
+SESFDDGGKPAKRPSVQAGDPFAEKVLIECCLELFRDSLVEGIQDLGAAGISCATSELASNGEGGMRVELTDVLLRDSTL
+TPGEILMSESQERMMAVVTPENVAAFEAVMAKWDVEHSWLGEVTGDGRLVITWDGETIVDVDPRTVAHDGPVYERPCHRP
+SFQDALQADTFRSSAAGQDLPATGEELKAAVVELMASPNMADVSWITRQYDRYVRGNTALASPDDAGVVRVDEETGMGVA
+VATDCNDRYAYLDPYAGAQLSLAEAYRNVTTTGAVPLAVTDCLNFGSPEDPEVMWQFAEAVRGLADACQVLGVPVTGGNV
+SLYNQTGGVAIHPTPTVGVLGRFDDVLRRTPSGFGTDADGQAVYLLGVTADELDGSEYANLRGHLGGVPPKVDLAQERLL
+GELLVNMSRDGMVDAAHDVSKGGLAATLADMVLRFGVGARIVLDEVVRRDGVDVFTALFSETQGRTVVSVPRTEEVRFTD
+MTTARGYTVTRIGVVDAQSDALEVQGQFTLPIAELREAWEATLPKHFG
+>SA211_MHAAABBN_02204
+MSQQFNIETVADAQATPDVEQPWAELGLKENEYAEIKKILGRRPTAAELAMYSVMWSEHCSYKSSKVHLRQFGEKLTDEM
+KQHMMVGIGENAGVTDLGDGWAVTFKVESHNSPSYVEPYQGAATGIGGIVRDIISMGARPVAVMDPLRFGAIDHPDTARV
+FHGVVAGIGGYGNSLGLPNIGGETRFDPIYQGNPLVNALAVGVLKHEDLRLANASGVGNKVVLFGARTGGDGIGGASVLA
+SESFDGDGKPAKRPSVQVGDPFSEKVLIECCLELFRDSLVEGIQDLGAAGISCATSELASNGEGGMRVELTDVLLRDSTL
+TPGEILMSESQERMMAVVTPENVAAFEAVMAKWDVEYSWLGEVTGDGRLIITWDGEVIVDVDPRTVAHDGPVYERPYARP
+AWQDELQADTFRSSEAGQDLPATGEELRAAVVELMSSPNLADTSWITRQYDRYVRGNTALAAPDDAGVVRVDEETGIGVA
+LATDCNDRFTYLDPYTGAQASLAEAYRNVTTAGAVPLAVSDCLNFGSPEDPDVMWQFAEAVRGLADGCQTLGIPVTGGNV
+SLYNQTGSTPIHPTPTVAVLGQLDDVLRRTPSGFAPDADGQAIYLLGETADELDGSEFARLRGHLGGLPPKVDLKKERLL
+GELLVNMSRDGMIDAAHDVSGGGLAATLSEMVLRFGVGARVVLDEVLRRAGVDLFTALFSETQARAVVAVPRTEEVRFTD
+MTTARGYAAVRIGVVDADSAALEVQDAFTLPIAELREAWEATLPKHFG
+>TT9_LFPAFLNI_00211
+MSQQFNIETVADAQATPDVEQPWAELGLKENEYAEIKKILGRRPTAAELAMYSVMWSEHCSYKSSKVHLRQFGEKLTDEM
+KQHMMVGIGENAGVTDLGDGWAVTFKVESHNSPSYVEPYQGAATGIGGIVRDIISMGARPVAVMDPLRFGAIDHPDTARV
+FHGVVAGIGGYGNSLGLPNIGGETRFDPIYQGNPLVNALAVGVLKHEDLRLANASGVGNKVVLFGARTGGDGIGGASVLA
+SESFDGDGKPAKRPSVQVGDPFSEKVLIECCLELFRDSLVEGIQDLGAAGISCATSELASNGEGGMRVELTDVLLRDSTL
+TPGEILMSESQERMMAVVTPENVAAFEAVMAKWDVEYSWLGEVTGDGRLIITWDGEVIVDVDPRTVAHDGPVYERPYARP
+AWQDELQADTFRSSEAGQHLPATGEELRAAVVELMSSPNLADTSWITRQYDRYVRGNTALAAPDDAGVVRVDEETGMGVA
+LATDCNDRFTYLDPYTGAQASLAEAYRNVTTAGAVPLAVSDCLNFGSPEDPDVMWQFAEAVRGLADGCQTLGIPVTGGNV
+SLYNQTGSTPIHPTPTVAVLGQLDDVLRRTPSGFAPDADGQAIYLLGETADELDGSEFARLRGHLGGLPPKVDLKKERLL
+GELLVNMSRDGMIDAAHDVSGGGLAATLSEMVLRFGVGARVVLDEVLRRDGVDLFTALFSETQARAVVAVPRTEEVRFTD
+MTTARGYAAVRIGVVDADSAALEVQDAFTLPITELREAWEATLPKHFG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000264.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000264.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e3735a8d14692b3d41232f5134ca1ffdf33e85d1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000264.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00202
+MARYVPAPAPEPVPAAEEAALRQGRARPWWPYLLTAAVSVALLVWTVVAYPGLPEQVPVR
+WGIDGRPDRWEDTTFGTVAFGPIFGLGMTAFLALIAAMIPAMTGVHGATSAWRRVRQEGV
+NRGVREGMGWIALLSLLMTAPTTAEVLSAGAWRMPWWLMPLLLTALMVGVFGALRATLGR
+WTRWADGVAADLGHRPTPEELAEDKTWTPLGMKDDPEDPTVFPAKRPGYGVGTTINIGTR
+AGRLLVYGFVAVFMVALPLATWIGAYLAR
+>KBS0714_MOLHKGIG_00197
+MP-HPPRPTPDDVPAAERAALRRGRLRPWLPFLLAAALCLALLGWALVALPGLPERVPTH
+WGVDGRPDAWEDASFGTVATGPLIGLGVTGFLALVSAMVTVLVPTDPGLSPWRRVRQAGV
+HRGVQECLGWSCVLIVLVLAPTTAEVLAAGAWTMPWWILPLTLTVLMVGVFPAMRASTRR
+WTRWSDRVAAELGYRPTAAERAEDEVWTPLGLKRDPDDPAVFPTKRPGYGVGVTVNLATP
+AGRWLVRGFVVVVIVGLPLALWLGAFAAR
+>KD337_NAFOICDF_00150
+MP-HPPRPTPDDVPAAERAALRRGRWIPWLPYLLTAAVSAGLLVWAIVALPGLPDRVPVH
+WGIDGRPDAWEEKSFGTVAFGPLLGLGMTALLAFCAALTPAMTATPQDASPWRRVRQEGV
+NRGVREALGWLTLLIALATAPSTVEVLSNGAWRPAWWLMPLVLTLVMLGTVGVFGPALRR
+WTGWADRTAQDLGYRADFAELAEDAKWTPLGLKNDPEDPSAFPAKREGYGVGATVNLATT
+TGRLLVYGFVALFVIGLPAALWIGAFLNR
+>SA211_MHAAABBN_02193
+MP-HPSRPTPDDVPAAERAALRRGRLRPWLPFLLAAALCLALLGWALVALPGLPERVPTH
+WGVDGRPDAWEDTSFGTVATGPLIGLGMTGFLALVSAMVTALVPTDPGLSPWRRVRQAGV
+HRGVQECLGWPCVLIVLVLAPMTAEVLAAGAWTMPWWLLPLTLTVLMVGVFPAMRVSTRR
+WTRWSDRVAAELGYRPTAAELAEDEVWTPLGLKRDPDDPAVFPAKRPGYGVGVTVNLATP
+AGRWLVRGFVAVFIVGLPLALWLGAFAAR
+>TT9_LFPAFLNI_00197
+MT-HPPHPVPADVPAAERAALRRGRLRPWLPFLLAAALCLALLGWALVALPGLPERVPTH
+WGVDGRPDAWEDASFGTVATGPLIGLGMTGFLALVSAMVTALVPMDPGLSPWRRVRQPGV
+HRGVQACLGWSCVLIVLVLAPTTAEVLAAGAWTMAWWLLPLTLTVLMVGIFPAMRAGTRR
+WTRWADRVAADLGHRPTAAELAEDEVWTPLGLKRDPEDPAVFPAKRPGYGVGVTVNLATP
+AGRWLVRGFVAVFIVGLPLALWLGAFAAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000265.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000265.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3126bd821f9e4e4b41c3accc425f85403ca1cbda
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000265.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00203
+MT--TETRLLLLADTHIPPRARAMPAQVWDEVARADVVLHAGDWVEESVLDELEARSRRL
+VGVWGNNDDGALRARLPEVARVEIGGVRIAMVHETGAARGRERRMAEAFPDADVLVFGHS
+HIPWDTVAGPETANPGLRLLNPGSPTDRRRQPVCTLMRAVVRDGGLADVELVPVDRTP
+>KBS0714_MOLHKGIG_00196
+MPDDVAVRLLLIADTHIPRRARALPAQVWAEVARADVVLHAGDWVTEDVLDDLDARAARL
+VGVWGNNDGPKLRARLPEVARVELGGVRIAMVHETGPAAGRERRMAAAFPDADVLVFGHS
+HIPWDTVAGPDTANPGLRLLNPGSCTDRRRQPVCTLMRAVVRGGRLEDVELVSVDRTP
+>KD337_NAFOICDF_00151
+----MTTRLLLIADTHIPRRARALPAQVRAEVARADVVLHAGDWVAEDVLDDLDAQAARL
+VGVWGNNDGPRLRARLPEVARVEIGGVRIAMVHETGPAAGRERRMAAAFPDADVLVFGHS
+HIPWDTVAGPETANPGLRLLNPGSCTDRRRQPVCTLMRAVVRGGRLEDVELVPVDRTP
+>SA211_MHAAABBN_02192
+MPDDVAVRLLLIADTHIPRRARALPAQVRAEVARADVVLHAGDWVAEDVLDDLDARAARL
+VGVWGNNDGPGPRARLPEVARVELGGVRIAMVHETGPAAGRERRMAAAFPDADVLVFGHS
+HIPWDTVAGPETANPGLRLLNPGSCTDRRRQPVCTLIRAVARDGRLEDVELVPVDRTP
+>TT9_LFPAFLNI_00196
+MPDDVAVRLLLIADTHIPRRARALPAQVRAEVARADVVLHAGDWVAEDVLDDLDARAARL
+VGVWGNNDGPGPRARLPEVARVELGGVRIAMVHETGPAAGRERRMAAAFPDADVLVFGHS
+HIPWDTVAGPETANPGLRLLNPGSCTDRRRQPVCTLIRAVARDGRLEDVELVPVDRTP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000270.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000270.fa
new file mode 100644
index 0000000000000000000000000000000000000000..93835f25952f2d5e03c7dea98e906ab5b5a58c8e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000270.fa
@@ -0,0 +1,95 @@
+>AS2_ACLBLIBL_00209
+MSSNFDFLAPVWPRVHENAVRAESYLHADPRSACFYARRTVELVVEGIYRLRNLPEPYKADLAARINADAFLHEADPRIV
+QKLNVIRQRGNDAVHKLPDIDPRTAAF-----VLTELHHVLLWAAFRHSAAGPALDMQARFAPALAPQAAPLTREEVVQL
+NDLIEKKDAEAAAALAASEQAREQLEADLAAARAELTAAKEAAGAVVDPRDYTENDTRDLFIDQLLNEAGWPLTAARDRE
+F------PVTGMPTPTGDGFVDYVLWGADGKPVALVEAKRTTASVQLGQDQAARYADALEARF--------GRRPVIFYT
+NGVEHYLWDDAAGYP--PRQVRGFYTP-AQLDTLIQRRAGRRPLAQT---------PVKAEIAGRPYQERAIRAIGEAFE
+NK---RRATLLVMATGTGKTRTAVALVDQMARAGWVKRVLFLADRQALVKQAADAF------------------VEHGFA
+GTTVNLLKNRHGEGRVYASTYP--------------TMLGLIQE---------------------------STGQGARFD
+PGYFDLVIVDEAH--RSVYAKYGEIFRHFDAL-LVGLTATPKDEIDRNTYGLFGLEPGVPTDAYTLDEAVADGFL-VPPR
+GVSVGTAFLRRGIRYDQ---LPAEEQ----EAWDALDWGEDEAPEEVSSEEINRFLFNADTVDRVLSTLMEH--GHKVAD
+GERLGKTIVFAKNQPHAEFILQRFDA--QWPELGGRYAQIITHASRYPEAMLDDFKTPGKAPHIAISVDMLDTGVDVPDV
+VNLVFFKLVRSKTKFWQMIGRGTRLRPD-----LYGPGRDKEDFLVFDWCQNLEFFNQDLPESDGSTQKSLT-QRLFEDR
+LALVVALDALDDDGGAPAAVGPEERAV---RRTAAEELQAAIA-RLTLENVLVRPHRREVEEFQRPEAWTSLSAQAAERA
+RALAGVVTGLPGEDVDAK---------------------RFD----LLIVRRQLADLSGEGG-----------TAERIRA
+TVQSLAENLLS-KDAIPAVK--EQIILLEAVAGEDWWEGVTLGMLEHARKKLRG--------LVQFIEKVRRSRVYTDFA
+DTLTQLEEVDVVRPTPGVDIERFWAKVSEPLRRNESSLALQKLRHGKQLTKQDLESLEQLLRSIGAEDVHLAAAKSEGEG
+--QLGLFVRMLVGMDRAAAQGVVADFVQDRTLTQAQ--IRFLGHMVEELTANGVLDAGRLFESPYTDDAPEGPFGLFEEA
+QVYSLRERLD--------LVRASAMVPGPEAN-----------------------------------ADGDEARGVVA--
+--------------------------------
+>KBS0714_MOLHKGIG_00035
+MR--------------------------------------------------------------RI--------------
+---------------------PRTGPLDEGPGLLT------LFSAFMDTPSD----------------------------
+-----------AARVAAEERARA-------------------------------------LIDEQFRRAGWSVQDGAQKN
+LMASAGVAVREVTMRAGHGRVDYLLY-VDRRPVGVIEAKPVGTTLAGVEWQSGMYADGLPDDALKRAVVVDGRLPFVFES
+TGSESYLTN---GYDPNPRARRVFSIPRPEYFSQLMRDAEADPDAPTWRGKVRAMPPLQTE-GLRPAQIDAVRGLERSLA
+EQ--RHDRSLIQMATGAGKTFTAITAAYRLLAHGGFRRILFLVDRNNLADQTLAEF------------------ENYRL-
+----------PGDGRRFTEVYPVDKLRRAGMRDSANVVISTIQRVYAGLQGKEVPDSDDPMLDEFVPDRPVTVDYSADLP
+PESFDLVIVDEAH--RSIYGVWRGVLEYFDAH-VVGLTATP----GKQTLGFFRQN---LVSEYTYPQSVADGVN-VDFD
+LYRIRTQISEEGSTIEAGTVVPVQDKSTRIERFETLDEDLD-----YTRTQLDRAVVSTNQIRLVLEVFRDRLFTEIFPG
+RTEVPKTLIFAKDDNHAESIVRTVRE--VFGR-GNEFAAKITYSARDPKGQLQAFRN-SPALRVAVTVDMIATGTDVKPL
+ECVLFMRDVRSAQYFEQMKGRGARTIPDADFQAVTPDAATKTRFVIVDAVGVTE---HDFVDPPLNRQKAVPLKKLLEKA
+ASLTI----------------TEDEAATLASRLAKLELELSDSERQELDDVAGGSVRQMVKDLV---AAVDADEQASVRA
+EAAA------RGEDEDRA---LEEHIERAVTPLAANPDLRMR----ILELRRAHDRVIDEVSADVLLDAYGVVDADKARS
+VVESWSAYLEEHRDEITAVQ-----VMFEAGEGRLQYAQVA----ELAERIKRPPYSWTPEILWKAYESLDAGRVRRSDH
+HTLTDL--VSLLRFATGTDDEL--VPFADRVRENYAGWLLAQEQAGAEFSDTQRWWLDRMVEVIGAS-AELTVDDLEGAP
+------------FTDRGGIDGAVRDLGPRAGL--------LIEELNEELTA-----------------------------
+--------------------------------------------------------------------------------
+--------------------------------
+>KBS0714_MOLHKGIG_00190
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------MATGTGKTCTAVALVDQMARAGWVKRVLFLADRQALVKQAADAF------------------VEHGFV
+GTTVNLLKNRHGEGRVYASTYP--------------TMLGLIQE---------------------------STGQGARFD
+PGYFDLVIVDEAH--RSVYAKYGEIFRHFDAL-LVGLTATPKDEIDRNTYGLFGLEPGVPTDAYTLDEAVADGFL-VPPR
+GVSVGTTFLRRGTRYDQ---LPAEEQ----EAWDALDWGEDEAPEEVSSEEINRFLFNADTVDRVLSTLREH--GHKVAG
+SERLGKTIVFAKNQPHAEFILQRFDA--QWPELGGRYAQIITHASRYPDALLDDFKTPGKAPHIAISVDMLDTGVDVPDV
+VNLVFFKLIRSKTKFWQMIGRGTRLRPD-----LYGPGRDKEDFLVFDWCQNLEFFNQDLPESDGFTQRSLT-QRLFEDR
+LALVVALDALDDDAGAPAAVGPEERAVRELRRTAAEELQAAIA-RLTLENVLARPLRREVEEFQRPEAWTSLSAQAAERA
+RALAGVVTGLPGEDVDAK---------------------RFD----LLIVRRQLADLTGEAG-----------TAERIRA
+TVQSLGENLLS-KDAIPAVK--EQIILLEAVAGEEWWEGVTLGMLEHARKKLRG--------LVQFIEKVRRSRVYTDFA
+DTLTQLEEVDVVRPTPGVDIERFWAKVSEPLRHNESSLALQKLRHGKQLTEPDLESLEQLLRSIGAEDAHLAAAKSEGEG
+--QLGLFVRMLVGMDRAAAQGVVADFVQDRTLTQAR--IRFLGHMVEELTANGVLDAGRLFESPYTDDAPEGPFGLFEEA
+QVYSLRERLD--------FVRTSAMVPGPEAN-----------------------------------AGGDEARGVVA--
+--------------------------------
+>SA211_MHAAABBN_02020
+MA------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------------------------------------------------VDITYDEA-----------
+----------------------------------LIE-------------------------------------------
+--------------------------------------------------------EIAARFDLRDPNKNALTEIVQRIA
+DGGIGYQEMVADLATGVGKTFLMSSLIEYLAQQG-VRHVLVVTPGSTIQRKTLANFDAASAKYVAGADIAPFVVTPDNFQ
+AANVGSVLRNPQRLKVFVFNVQ--------------QLIRPTDKV-----SRKVRSEDENLGDALY----SHLENADDL-
+-----FVIADEHHVYREKAKAFSAAIRDLNPVALVGLTATP----DKDDYGK-------VVFQYTLGEAIADGYVKVPVI
+VYRKDGTKDERTQLRDACQLLGHKEKSY------------------AVYRETNR---DAPTVKPVL--------------
+-------FVVCQTIEHATEVGQLLAQSGMIGD-GSQVLEITSQSSDVALEALAKVEEPDSPIRAIVSVNMLREGWDVKNI
+AVIVALRRLASQTLTEQILGRGLRL-----------PFGARTGIADVDQV--------DLVAHDSYQQLLAQ-KDVLRQR
+IQLPSTAVEVDDQGFATT---TEVDP----NQPVPVEPLAGSSQHDQIGGSGGSSSLAPA-----PGQWTLFDWEEDDSA
+----------QGEDYQPNPGLIFEETEQRVESQVPEPQYRVKDAPQIIFPRREPRLVHSPFSLSDIPD----GDAQKAGA
+AFVKEVPTFIF-RDALEAKRKGDQVEIISTPQG-------T----SEAQQTLAG--------L---------DVVQAELT
+EAIMQQPEVPAERPSKNAAKRLVKAFMKGAGVTNDEETA----QWGTKRRQQAVEGMRTMIR-----------DKITSRP
+RQEKFEFVKIELPLEPVT---VAADAVKAHNVVKFKKGLQYVG-WEKNVMPVATFDAGT------------------TEW
+ELARLMDRDPNIKWWVRVYVGGQAFIPTPEGRYFPDFIALDVDGVHWLIEGKADDHAKDDSVLRKKKAAENWARAVRDDG
+DFGTWRYMFATESNIKNSAGSWNALLMSTKPE
+>TT9_LFPAFLNI_00190
+MSSNFDFLAPVWPRVHENAVRAESYLHTDPRSACFYARRTMELVVEGIYRLRGLPEPYKADLAARINADAFLHEADPRIV
+QKLNVIRQRGNDAVHKLLDIDPRTAAF-----VLTELHHVLLWAAFRHSAAGPALDMQARFDPALAPQAAPLTREEVVQL
+NDLIEKRDAEAAAALGASEQARAQLEADLAAARAELTAVKEAAGAVVDPRDYTENDTRDLFIDQLLNEAGWPLTDTRGRE
+F------PVTGMPTPTGDGFVDYVLWGADGKPVALVEAKRTTASVQLGQDQAARYADALEARF--------GRRPVIFYT
+NGVEHYLWDDAAGYP--PRQVRGFYTP-AQLDTLIQRRAGRRPLAQT---------PVKAEIAGRPYQERAIRAIGEAFE
+NK---RRAALLVMATGTGKTRTAVALVDQMARAGWVKRVLFLADRQALVKQAADAF------------------VEHGFA
+GTTVNLLKNRHGEGRIYASTYP--------------TMLGLIQE---------------------------STGQGARFD
+PGYFDLVIVDEAH--RSVYAKYGEIFRHFDAL-LVGLTATPKDEIDRNTYGLFGLEPGVPTDAYTLDEAVADGFL-VPPR
+GVSVGTTFLRRGIRYDQ---LPAEEQ----EAWDALDWGEDEAPEEVSSEEINRFLFNADTVDRVLSTLMEH--GHKVAD
+GERLGKTIVFAKNQPHAEFILQRFDA--QWPELGGRYAQIITHASRYPDALLDDFKTPGKAPHIAISVDMLDTGVDVPDV
+VNLVFFKLVRSKTKFWQMIGRGTRLRPD-----LYGPGRDKEDFLVFDWCQNLEFFNQDLPESDGSTQKSLT-QRLFEDR
+LALVVALDALDDDAGAPATAGPEERAVRELRRTAAEELQAAIA-RLTLENVLARPLRREVEEFQRPEAWTSLSAQAAERA
+RALAGVVTGLPGEDVDAK---------------------RFD----LLIVRRQLADLTGEAG-----------TSERIRA
+TVQSLAENLLS-KDAIPAVK--EQIILLEAVAGEEWWEGVTLGMLEHARKKLRG--------LVQFIEKVRRSRVYTDFA
+DTLTQLEEVDVVRPTPGVDIERFWAKVSEPLRRNESSLALQKLRHGKQLTEQDLESLEQLLRSIGAEDVHLAAAKSEGEG
+--QLGLFVRMLVGMDRAAAQGVVADFVQDRTLTQAQ--IRFLGHMVEELTANGVLDAGRLFESPYTDDAPEGPFGLFEEA
+QVYSLRERLD--------FVRTSAMVPGPEAN-----------------------------------AGGDEARGVVA--
+--------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000271.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000271.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e08640ed08899ad4e20159093297d54ef1cfad4c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000271.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00214
+MTTPPVTVTLGTSGATLDDVVAVARHDARVVLADDVLETVGAVRRHVEALAEAETPTYGVSTGFGALADKHIPLESRAQL
+QKSLIRSHAAGMGPVVEREVVRALMFLRATTLASGRTGVRPVVVETFVAMLNAGITPAVREFGSLGCSGDLAPLSHVALA
+LMGEGDVVGADGALRPAGEALAEAGIEPVELREKEGLALVNGTEGMLGMLIMALADLEELADTVDLTAAMSVEALLGTDR
+VFVPELHLPLRPHPGQATSADRMLKILAGSPIVASHKEGDSRVQDAYSLRCAPQVAGGLRDTLAYVRTVAERELAATVDN
+PVVLDDGRVSSNGNFHGAPVAYVLDFLAIPVADVASMSERRTDRMLDPARSHGLPAFLVDDPGVDSGMMIAQYTQAGLVS
+DMKRLAVPASVDSIPSSAMQEDHVSMGWHAARKLRSAVENFRRVLAVELVAAARAIELRAPLQPSAATGAAVRVIREAGV
+PGPGPDQYMAPQLAAAEQALRDGSVLAAVAEALAGVSADAEPQDLAWKSEGTEAEGH
+>KBS0714_MOLHKGIG_00187
+MTTPPVTVTLGTSGATLDDVVAVARHDARVVLADDVLETVGAVRRHVEALAEAETPTYGVSTGFGALADKHIPLESRAQL
+QKSLIRSHAAGMGPVVEREVVRALMFLRATTLASGRTGVRPVVVETFVAMLNAGITPAVREFGSLGCSGDLAPLSHVALA
+LMGEGDVVGTDGALRPAGEALAEAGIEPVELREKEGLALVNGTEGMLGMLIMALADLEELADTVDLTAAMSVEALLGTDR
+VFVPELHLPLRPHPGQATSADRMLKILAGSPIVASHKEGDSRVQDAYSLRCAPQVAGGLRDTLAYVRTVAERELAATVDN
+PVVLDDGRVSSNGNFHGAPVAYVLDFLAIPVADVASMSERRTDRMLDPARSHGLPAFLVDDPGVDSGMMIAQYTQAGLVS
+DMKRLAVPASVDSIPSSAMQEDHVSMGWHAARKLRSAVENFRRVLAVELVAAARAIELRAPLQPSAATGAAVRVIREAGV
+PGPGPDQYMAPQLAAAEQALRDGSVLAAVAEALAGVSADAEPQDLAEESEGAEAEGH
+>KD337_NAFOICDF_00159
+MTT---TVTLGTSGATLDDVVAVARHDARVVLADDVLETVGAVRRHVEALAEAETPTYGVSTGFGALADKHIPLESRAQL
+QKSLIRSHAAGMGPVVEREVVRALMFLRATTLASGRTGVRPVVVETFVAMLNAGITPAVREFGSLGCSGDLAPLSHVALA
+LMGEGDVVGADGALRPAGEALAEAGIEPVELREKEGLALVNGTEGMLGMLIMALADLDELVDTVDLTAAMSVEALLGTDR
+VFVPELHLPLRPHPGQAASADRMLKILAGSPIVASHKEGDSRVQDAYSLRCAPQVAGGLRDTLAYVRTVAERELAATVDN
+PVVLDDGRVSSNGNFHGAPVAYVLDFLAIPVADVASMSERRTDRMLDPARSHGLPAFLVDDPGVDSGMMIAQYTQAGLVS
+DMKRLAVPASVDSIPSSAMQEDHVSMGWHAARKLRSAVENFRRVLAVELVAAARAIELRAPLQPSAATGAAVRVIREAGV
+PGPGPDQYMAPQLAAAEQALRDGSVLAAVAEALAGASADAEPQDLAEESAGAEAEGH
+>SA211_MHAAABBN_02183
+MTTPPVTVTLGTSGATLDDVVAVARHDARVVLADDVLETVGAVRRHVEALAEAETPTYGVSTGFGALADKHIPLESRAQL
+QKSLIRSHAAGMGPVVEREVVRALMFLRATTLASGRTGVRPVVVETFVAMLNAGITPAVREFGSLGCSGDLAPLSHVALA
+LMGEGDVVGEDGALRPAGEALAEAGIEPVELREKEGLALVNGTEGMLGMLIMALADLEELADTVDLTAAMSVEALLGTDR
+VFVPELHLPLRPHPGQATSADRMLKILAGSPIVASHKEGDSRVQDAYSLRCAPQVAGGLRDTLAYVRTVAERELAATVDN
+PVVLDDGRVSSNGNFHGAPVAYVLDFLAIPVADVASMSERRTDRMLDPARSHGLPAFLVDDPGVDSGMMIAQYTQAGLVS
+DMKRLAVPASVDSIPSSAMQEDHVSMGWHAARKLRSAVENFRRVLAVELVAAARAIELRAPLQPSAATGAAVRVIREAGV
+PGPGPDQYMAPQLAAAEQALRDGSVLAAVAEALAGVSADAEPQDLAEESEGAEAEGH
+>TT9_LFPAFLNI_00184
+MTTPPVTVTLGTSGATLDDVVAVARHDARVVLADDVLETVGAVRRHVEALAEAETPTYGVSTGFGALADKHIPLESRAQL
+QKSLIRSHAAGMGPVVEREVVRALMFLRATTLASGRTGVRPVVVETFVAMLNAGITPAVREFGSLGCSGDLAPLSHVALA
+LMGEGDVVGTDGALRPAGEALAEAGIEPVELREKEGLALVNGTEGMLGMLIMALADLEELADTVDLTAAMSVEALLGTDR
+VFVPELHLPLRPHPGQATSADRMLKILAGSPIVASHKEGDSRVQDAYSLRCAPQVAGGLRDTLAYVRTVAERELAATVDN
+PVVLDDGRVSSNGNFHGAPVAYVLDFLAIPVADVASMSERRTDRMLDPARSHGLPAFLVDDPGVDSGMMIAQYTQAGLVS
+DMKRLAVPASVDSIPSSAMQEDHVSMGWHAARKLRSAVENFRRVLAVELVAAARAIELRAPLQPSAATGAAVRVIREAGV
+PGPGPDQYMAPQLAAAEQALRDGSVLAAVAEALAGVSADAEPQDLAEESEGAEAEGH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000273.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000273.fa
new file mode 100644
index 0000000000000000000000000000000000000000..543649c4bb0bd825460066f67b51e1eb130bb70a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000273.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00216
+MDSSRPADHELHTDTTAMAAIEADAPRPPARWRMIVYSAIGIVMFFVPVTINGASSIPLD
+HLVTWVRGLLGPADRWVGLAIIATGAVYPFASGRWRTSTTRTVFALLAVLGLVASAMVVF
+GVGPSWILDESIGPFLMDKLVVPVGLIVPIGGVFLALVIGYGLMEFVGVYLRPAMRPIWR
+VPGRAAVDAVASFVGSYALGLLLTNRMYTGGRYTAREAAIIAVGFSTVSATFMVIVAKTL
+GLMDIWLWYFFSALVVTFVVTAITVCIPPLSRIPDEVYPGAVHSPEQAVTRDRFRVALRA
+AEQTLAEAPSLPKNIWVNFRDGLVMVLQILPSIMSVGLIALVLATYTPVFEWIGMIFYPL
+FWALGYSDPGLLASASATSIAEMFIPATMAAGHEDLVARFVIGVVCVSAIIFFSAVVPAI
+LATDIPVKMWHLLVIWVERVALTIVLATPLAHLVAALT-
+>KBS0714_MOLHKGIG_00185
+MDSSRPADHELHTDTTAMAAIEADAPRPPARWRMIVYSAIGIVMFFVPITINGASSIPLD
+HLVTWVRGLLGPADRWVGLAIIAAGAVYPFASGRWRTSTTRAVFAFLAVLGLVASAMVVF
+GVGPSWILDESIGPFLMDKLVVPVGLIVPIGGVFLALVIGYGLMEFVGVYLRPAMRPIWR
+VPGRAAVDAVASFVGSYALGLLLTNRMYTGGRYTAREAAIIAVGFSTVSATFMVIVAKTL
+GLMDIWLWYFFGTLAVTFAVTAITVRIPPLSRIPDECYPGVTHSPEQAVTRDRFRVARRA
+AEQTLAEAPSLPKNIWVNFRDGLVMVLQILPSIMSVGLIALVLATYTPVFEWIGVIFYPL
+FWALGYSDPGLLASASATSIAEMFIPATMAAGHEDLGARFVIGVVCVSAIIFFSAVVPAI
+LATDIPVKMWHLLVIWVERVALTIVLATPLAHLVAALT-
+>KD337_NAFOICDF_00161
+MTHAHPADGELHTDTTAMAAIEADSPRPPARWRMVVYSLIGIVMFFVPVTINGASSIPLD
+HLVTWVRGLLGPADRYVALALIAAGAVFPFATGRWRQSVTTTVFAFLGVVGLLTACMVVF
+GFGPSWVLDKGIGPFLLDKLVIPVGLIVPIGGVFLALVIGYGLMEFVGVYLRPAMRPIWR
+VPGRAAVDAVASFVGSYALGLLLTNRMYTGGRYTAREAAIIAVGFSTVSATFMVIVAKTL
+DLMDHWLWYFFGTLVVTFVVTAITVRIPPLSRIPDEPFPGAVHVPEEAVTQDRFRVARRA
+AEQTLAEAPSLGRNVWLNFRDGLVMVLQILPSIMSVGLIALVLATYTPVFEWVGLIFQPV
+FWALGFSDPALMASASATSIAEMFIPATMLAGHEDFVARFVIGVVCVSAIIFFSALVPAI
+LATDIPVKLWHLVVIWVERVVLTVLLATPLGHLVAALTS
+>SA211_MHAAABBN_02181
+MDSSRPADHELHTDTTAMAAIEADAPRPPARWRMIVYSAIGIVMFFVPVTINGASSIPLD
+HLVTWVRGLLGPADRWVGLAIIAAGAVYPFASGRWRTSTTRTVFALLAVLGLVASAMVVF
+GVGPSWILDKSIGPFLMDKLVVPVGLIVPIGGVFLALVIGYGLMEFVGVYLRPAMRPIWR
+VPGRAAVDAVASFVGSYALGLLLTNRMYTGGRYTAREAAIIAAGFSTVSATFMVIVAKTL
+GLMDIWLWYFFGTLVVTFAVTAITVRIPPLSRIPDEVYPGAVHSPELAVTRDRFRVARRA
+AEQTLAEAPSLPKNIWVNFRDGLVMVLQILPSIMSVGLIALVLATYTPVFEWIGVIFYPL
+FWALGYSDPGLLASASATSIAEMFIPATMAAGHEDLVARFVIGVVCVSAIIFFSAVVPAI
+LATDIPIPLWKLVVIWAERVALTILLAMPVAHLVAALT-
+>TT9_LFPAFLNI_00182
+MDSSRPADHELHTDTTAMAAIEADAPRPPARWRMIVYSAIGIVMFFVPITINGASSIPLD
+HLVTWVRGLLGPADRWVGLAIIAAGAVYPFASGRWRTSTTRAVFAFLAVLGLVASAMVVF
+GVGPSWILDKSIGPFLMDKLVVPVGLIVPIGGVFLALVIGYGLMEFVGVYLRPAMRPIWR
+VPGRAAVDAVASFVGSYALGLLLTNRMYTGGRYTAREAAIIAVGFSTVSATFMVIVAKTL
+GLMDIWLWYFFGTLAVTFAVTAITVRIPPLSRIPDECYPGVTHSPELAVTRDRFRVARRA
+AEQTLAEAPSLPKNIWVNFRDGLVMVLQILPSIMSVGLIALVLATYTPVFEWIGVIFYPL
+FWALGYSDPGLLASASATSIAEMFIPATMAAGHEDLVARFVIGVVCVSAIIFFSAVVPAI
+LATDIPIPLWKLVVIWAERVALTILLATPVAHLVAALT-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000277.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000277.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0402af269091083e275abb0e08f85e676dc98fd3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000277.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00220
+MRISVGQFGPVGDVEANLAVMARLAARAAGEGAELLVLPEEAMLGAREVGEEFPDAIAAA
+WEPFAAGLAALAREHGIAVVAGGYEPGPDRRPYNTLLAVGADGARLGAYRKLHLYDAFAH
+RESDRISPGDGGVAAIELDGLRLGLLTCYDLRFPELSRRLAVEGADVLVIPAAWFSGEHK
+VEHWRTLLKARAVENTVWVAAADTCSDGTVGHSMIVDPLALPVVELADER--EAVVTAEV
+TRERIDEVRKFLPSLANRRTDVL----------
+>KBS0714_MOLHKGIG_00181
+MRISVGQFGPVGDVEENLAVMARLAARAAGEGADLLVLPEEAMLGAREVGEEFPDAVAAA
+WEPFAAGLAALAREHGIAVVAGGYEPGPDRRPYNTLLAVGADGARLGAYRKLHLYDAFAH
+RESDRITPGDGGVAAIELGGLRLGLLTCYDLRFPELSRRLAVEGADVLVIPAAWFSGEHK
+VEHWRTLLKARAVENTVWVAAADTCSDGTVGHSMIVDPLALPVAELADER--EAVATAEV
+TRERIDEVREFLPSLANRRTDVL----------
+>KD337_NAFOICDF_00165
+MRIAVGQFGPTGRVEDNLEAMGRLAARAAAEGAGLLVLPEEAMLTFREVEDEFAHAVAGS
+WEPFTEGLARLARQHGLAIVAGGYEPSATDRPYNTLVAVDADGAVAGAYRKLHLYDAFEH
+RESELITPGDRGLVTVEVGGLTVGLQTCYDLRFPEVSRALALAGAQVLAIPAAWFAGEHK
+VDHWRTLLRARAVENTVWVAAADTASAATVGHSAIIDPLALTLAEADDDAAPETLLCADV
+TAERVEEVRRTVPVLANRRTDVLTPPVDVEPGG
+>SA211_MHAAABBN_02177
+MRISVGQFGPVGDVEANLAVMARLAARAAGEGADLLVLPEEAMLGAREVGEEFPDAVAAA
+WEPFAAGLAALAREHGIAVVAGGYEPGPDRRPYNTLLAVGADGARLGAYRKLHLYDAFAH
+RESDRITPGDGGVAAIELGGLRLGLLTCYDLRFPELSRRLAVEGADVLVIPAAWFSGEHK
+VDHWRTLLKARAVENTVWVAAADTCSDGTVGHSMIVDPLALPVAELADER--EAVVTAEV
+TRERIDEVREFLPSLANRRTDVL----------
+>TT9_LFPAFLNI_00178
+MRISVGQFGPVGDVEANLAVMARLAARAAGEGADLLVLPEEAMLGAREVGEEFPDAVAAA
+WEPFAAGLAALAREHGIAVVAGGYEPGPDRRPYNTLLAVGADGARLGAYRKLHLYDAFAH
+RESDRITPGDGGVAAIELGGLRLGLLTCYDLRFPELSRRLAVEGADVLVIPAAWFSGEHK
+VDHWRTLLKARAVENTVWVAAADTCSDGTVGHSMIVDPLALPVAELADER--EAVVTAEV
+TRERIDEVREFLPSLANRRTDVL----------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000280.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000280.fa
new file mode 100644
index 0000000000000000000000000000000000000000..643dc58cfb3b412a65bc6e8974470971d361a688
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000280.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00223
+MSTAAPHTQHSDSASPAPTR---KGPSVGTWRPWAVLPWALALLALPLIALALRSNFGAN
+GWMTVIYMVFGALPHELFLMLMVGSLFLLPRVNPLDEQRGGIRLGRLLHTLLGVSWGSFA
+LAAILFPDAGDHPDSAATTPVLMDLLGKSTAMDVGSVAGLALAAVSALTGLAVIVVCVVR
+RIRAV--R
+>KBS0714_MOLHKGIG_00178
+MSTAAPHTQHSDFPSPTPTR---KGPSVGTWRPWAVLPWALALLALPLIALALRSNFGAN
+GWMTVIYMVFGALPHELVLMVLVGSLFLLPRVNPQDEQRGGIRLGRLLHTLLGVSWGSFA
+LAAIIFPDGGDHPDSGATTPVLMDLLGKSTAMDVGIVGGLALVAVSALTGLAVIVVCVVR
+RIRAV--R
+>KD337_NAFOICDF_00169
+M--AVPHPVMPPPGTPLPHQLRPAGPSVGTPRWLPAVLWIVAFALLPLCVIVGRFATENG
+GWLLFTYIMFGWMVQGGLGVLAAASLFLLPRVNPPVERRAGVRTGVVVHLLLGASWLTGL
+LGMLAFGDYGDAPGSETAPAPLVDLYGMDRAVEIGDAVGPPLVGISLLTGLAAVVLVVVR
+RLAAAVRS
+>SA211_MHAAABBN_02174
+MSTAAPGTQHSDFASPTPTR---KGPSVGTWRPWAVLPWALALLALPLIALALRSNFGAN
+GWMTVIYMVFGALPHELALVLMVGSLFLLPRVNPQDEQRGGIRLGRLLHTLLGISWGSFA
+LAAIIFPDGGDHPDSGATTPVLMDLLGKSTAMDVGLVGGLALVAVSALTGLAVIVVCVVR
+RIRAV--R
+>TT9_LFPAFLNI_00175
+MSTAAPGTQHSEFASPAPAR---KGPSVGTWRPWAVLPWALALLALPLIALALRSDFGAN
+GWMTVIYMVFGALPHELVLMVLVGSLFLLPRVNPQDEQRGGLRLGRLLHTLLGVSWGSFA
+LAAIIFPDGGDHPESGATTPVLMGLLGTSTAMDVGIVGGLALVAVSALTGLAVIVVCVVR
+RIRAV--R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000281.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000281.fa
new file mode 100644
index 0000000000000000000000000000000000000000..98fbe6c59aa87af031430e47f3b22b0f566827b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000281.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00231
+MAKLYFRYGAMNSGKSTGLLQAAFNYEERGQRVLLAKPEVDVKGEDEVVSRLGVTRTVDF
+LVPAGAGVRELFRRHASGDDPDALVDHVDAPPVACLLVDEAQFLEPAQVDDLLRIAVLDG
+VPVIAYGLRTDFRTRCFPGSARLLELAHSLEELKTICRCGRKAVFNTRKVVNPATGAEHF
+VFEGDQVAIDGVEVTYESLCGSCYLAESGGRLG
+>KBS0714_MOLHKGIG_00152
+MAKLYFRYGAMNSGKSTGLLQAAFNYEERGQRVLLAKPEVDVKGEGDVVSRLGVTRAVDF
+LVPAGADVRELFRRHATGDDPDALVGHVEAPPVACLLVDEAQFLEPAQVDDLLRIAVLDG
+VPVIAYGLRTDFRTRSFPGSARLLELAHSLEELKTICRCGRKAVFNTRKVVDPATGAEHF
+VFEGDQVAIDGVQVTYESLCGTCYLAESGGALG
+>KD337_NAFOICDF_00170
+MAKLYFRYGAMNSGKSTGLLQAAFNYEERGQRVLLAKPAVDTKGDAAVVSRLGVTRAVDF
+LVPAGADVLALFRAHAAGDDPDALVDHVDAPPVACLLVDEAQFLEAGQVDDLLRIAVLED
+VPVMAYGLRTDFRTHSFPGSARLLELAHSLEELKTICRCGRKAVLNTRKVVDAATGRSRF
+VFEGDQVAIDGVEVTYESLCAACYLEESGGRLG
+>SA211_MHAAABBN_02166
+MAKLYFRYGAMNSGKSTGLLQAAFNYEERGQRVLLAKPEVDVKGEGDVVSRLGVTRAVDF
+LVPAGADVRELFRRHATGDDPDALVGHVEAPPVACLLVDEAQFLEPAQVDDLLRIAVLDG
+VPVIAYGLRTDFRTRSFPGSARLLELAHSLEELKTICRCGRKAVFNTRKVVDPATGAEHF
+VFEGDQVAIDGVQVTYESLCGTCYLAESGGALG
+>TT9_LFPAFLNI_00160
+MAKLYFRYGAMNSGKSTGLLQAAFNYEERGQRVLLAKPEVDVKGEGDVVSRLGVTRAVDF
+LVPAGADVRELFRRHATGDDPDALVGHVEAPPVACLLVDEAQFLEPAQVDDLLRIAVLDG
+VPVIAYGLRTDFRTRSFPGSARLLELAHSLEELKTICRCGRKAVFNTRKVVDPATGAEHF
+VFEGDQVAIDGVQVTYESLCGTCYLAESGGALG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000286.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000286.fa
new file mode 100644
index 0000000000000000000000000000000000000000..404f69538cc1a068d3958e3b48cbbd3dcfdfb7b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000286.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00236
+-------------------------------MMTRPLPEDSA----TVDAVALGRRVRHLRKQAGLTLDQLADRTGVSGS
+HLSLVENARREPRLSLVQRIAEVLGVPVEDLLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPTEVLEVIAG
+LEAELRRRLEEQAATPEEARRANAQLRARMRAVDNHYPDLEAEAQRLLDAIGHTGGPLGLHAVSSLAEHLGFTLSFVANL
+PHSTRSVTDLKHGRIHVSGGRASDHDRRTVVLQALAAAVLGHGEPRDYEDFLSQRVAVNYLAGALLMPQRPASALLRAAQ
+KRRDLSVDDLKDAFGVSYEAAAHRFTNLATVDLGIRCHFQKVHETGVIHKAYENDGLVFPADHTGAIEGQAACRRWGARQ
+AFGRSDRFRAHTQYTDAPNGTYWCTSMVEHGPDGLFALSVGTAFEHARHFRGADTRHRITSTCPDPRCCRLPDPALEAEW
+GGHVWPAARMHAHLLAAMPTQAFPGVDEVEVFEFLESQRDRTPGAPGADAPDGAGGVTP
+>KBS0714_MOLHKGIG_00147
+MDHGNGPPLVKNVTFFPKHVISSPVPSTVPRMMTRPLPEDSA----TVDTVALGRRVRHLRKQAGLTLDQLAERTGVSGS
+HLSLVENARREPRLSLVQRIAEVLGVPVEDLLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPTEVLEVIAG
+LEAELRRRLEEQAATPEEARRANAQLRARMRAVDNHYPDLEAEAHRLLDAIGHTGGPLGLHAVSELAEHLGFTLRFVPDL
+PHSTRSVTDLKHGRIHISGSRSSDHDRRTVVLQALAAAVLGHGEPRDYEDFLAQRVAVNYLAGALLMPQRAASSLLRAAQ
+KRRDLSVDDLKDAFGVSYEAAAHRFTNLATVDLGIRCHFQKVHETGVIHKAYENDGIVFPADHTGAIEGQQACRKWGARQ
+AFSRNDRFRAHAQYTDSPNGTFWCTSMIENGPDGLFALSVGTPFEHARYFRGADTRHRVTSTCPDPRCCRRPDPELEAAW
+GGHVWPAARMHAHLLAAMPTQTFPGVDEREVFEFLQAQEER----------EG------
+>KD337_NAFOICDF_00821
+-------------------------------MAT---PTDPAHEPPRVDPLVLGRRLRHLRRVSGATLSDVAEKVGVTAS
+HLSLVENGHREPRLTLLTALADVHGVGVEDLLTPEAPSRRAALEVAVERAQRGPLFQRLGLPALKIGPRTPDEVLEVIAG
+LQAELDRQMAERVSTPEEARRANSALREEMRACGNHYADLERRAQELREAVDVADGPLTHHHVSALAEHLGFAVRFVPDL
+PHSTRSVTDLKNRRIYLARARRPDHDPRAVLLQAVCSSVLGHGEPADYADFLRQRVYTNYLAAAMMMPERGTVRALREAK
+ERRDLSVDDLRDRFGVSWESAAHRFTNLATEHLGLTCHFAKVHESGVFHKAYENDGIPFPTDHIGAIEGQTACRHWTSRQ
+VFSVADHLGAFPQYTDTPAGTYWSAAVVEPTSTGFYSLTVGVPFDDAKWFRGRETSARTRSTCPDPKCCRLPSAELEAAW
+GGQAWPAARANAHLLAAMPGGAFPGVEEVQVFEFLQTQESRWP-------PEGSGAA--
+>SA211_MHAAABBN_02161
+-------------------------------MMTRPLPEDSA----TVDTVALGRRVRHLRKQAGLTLDQLAERTGVSGS
+HLSLVENARREPRLSLVQRIAEVLGVPVEDLLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPTEVLEVIAG
+LEAELRRRLEEQAATPEEARRANAQLRARMRAVDNHYPDLEAEAHRLLDAIGHTGGPLGLHAVSELAEHLGFTLRFVPDL
+PHSTRSVTDLKHGRIHISGSRSSDHDRRTVVLQALAAAVLGHGEPRDYEDFLAQRVAVNYLAGALLMPQRAASSLLRAAQ
+KRRDLSVDDLKDAFGVSYEAAAHRFTNLATVDLGIRCHFQKVHETGVIHKAYENDGIVFPADHTGAIEGQQACRKWGARQ
+AFSRNDRFRAHTQYTDSPNGTFWCTSMIENGPDGLFALSVGTPFEHARYFRGADTRHRVTSTCPDPRCCRRPDPELEAAW
+GGHVWPAARMHAHLLAAMPTQTFPGVDEREVFEFLQAQEER----------EG------
+>TT9_LFPAFLNI_00155
+-------------------------------MMTRPLPEDSA----TVDTVALGRRVRHLRKQAGLTLDQLAERTGVSGS
+HLSLVENARREPRLSLVQRIAEVLGVPVEDLLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPTEVLEVIAG
+LEAELRRRLEEQAATPEEARRANAQLRARMRAVDNHYPDLEAEAHRLLDAIGHTGGPLGLHAVSELAEHLGFTLRFVPDL
+PHSTRSVTDLKHGRIHISGSRSSDHDRRTVVLQALAAAVLGHGEPRDYEDFLAQRVAVNYLAGALLMPQRAASSLLRAAQ
+KRRDLSVDDLKDAFGVSYEAAAHRFTNLATVDLGIRCHFQKVHETGVIHKAYENDGIVFPADHTGAIEGQQACRKWGARQ
+AFSRNDRFRAHTQYTDSPNGTFWCTSMIENGPDGLFALSVGTPFEHARYFRGADTRHRVTSTCPDPRCCRRPDPELEAAW
+GGHVWPAARMHAHLLAAMPTQTFPGVDEREVFEFLQAQEER----------EG------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000288.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000288.fa
new file mode 100644
index 0000000000000000000000000000000000000000..93fac4a90b98c3062944a975dc53fa7eb0d8dde0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000288.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00240
+MRAEQVTDPITYHGEGPVWAEHWGTAASGLAAGGGLRWVDMLAGDVLSLRADGAVERTHV
+G-DVAAVVRPRAGGGAVLAVERGFALMSPEGELTTLPELWGPEAGLRMNEGGCDPDGRFH
+AGTMAYAKTPGAASLHRLSPGPDGGAGEVDVVLTGATTSNGLEWSPGGSLAYYNDTPTRQ
+VAVFDYSREEGLTNRRVLVDVLDGEGKPDGLTVDAEGGIWVAVISHGQIHRYTPEGTLDE
+VVEVPVQKTTACTFGGEDLGTLYITTSWENMERGEDPLAGALFAVRPGVTGLPARPFAS
+>KBS0714_MOLHKGIG_00144
+MRAEQVTDPIAYHGEGPVWAASWGAAAEGVTAGGGLRWVDMLAGDVLSLRADGTVDRTHV
+G-DVAAALRPRAGGGAVVAVERGFALISPEGELTTLPELWGADAGIRMNEGGCDPDGRFH
+CGTMAYAKTPGAANLYRLAPGPDGGAGEVDVVLTGATTSNGLEWSPDGTLAYYNDTPTRQ
+VAVFDYSREEGLTNRRVLVDVLDGEGKPDGLTVDAEGGIWVAVISHGQIHRYTPEGTLDE
+VVEVPVQKTTACTFGGDDLGTLYITTSWENLERGEDPLAGALFAVRPGVTGLPARPFAG
+>KD337_NAFOICDF_00174
+MRADQVTDPLCYHGEGPVWAESW----------GGLRWVDMLAGDVLSLGADGGVTRRNV
+DPKVCAVVRPRVGGGAVFAVERGFALEDPDGTLHRLPPLWDDAAGLRMNEGGCDPDGRFY
+AGSMAYAKTPGAASLHRLSPAPEGGAGEVDVVLEGVTTSNGLAWSPDGSLAYYDDTPTRQ
+VAVFDYSREEGLTNRRVLVDVLDGEGKPDGLCVDAEGGIWVAVISHGRIHRYTPEGVLDE
+VVEVPVQKTTACTFGGDDLGTLYITTSWEGMERGEDPLAGALFSVRPGVAGLPTLPFAG
+>SA211_MHAAABBN_02158
+MRAEQVTDPITYHGEGPVWAASWGSAAEGVTAGGGLRWVDMLAGDVLSLRADGTVDRTHV
+G-DVAAALRPRAGGGAVVAVERGFALISPEGELTTLPELWGADAGIRMNEGGCDPDGRFH
+CGTMAYAKTPGAANLYRLAPGPDGGAGEVDVVLTGATTSNGLEWSPDGTRAYYNDTPTRQ
+VAVFDYSREEGLTNRRVLVDVLDGEGKPDGLTVDAEGGIWVAVISHGQIHRYTPEGTLDE
+VVEVPVQKTTACTFGGDDLGTLYITTSWENLERGEDPLAGALFAVRPGVTGLPARPFAG
+>TT9_LFPAFLNI_00152
+MRAEQVTDPIAYHGEGPVWAASWGSAAEGVTAGGGLRWVDMLAGDVLSLRTDGTVDRTHV
+G-DVAAALRPRAGGGAVVAVERGFALISPEGELTTLPELWGADAGIRMNEGGCDPDGRFH
+CGTMAYAKTPGAANLYRLAPGPDGGAGEVDVVLTGATTSNGLEWSPDGTRAYYNDTPTRQ
+VAVFDYSREEGLTNRRVLVDVLDGEGKPDGLTVDAEGGIWVAVISHGQIHRYTPEGTLDE
+VVEVPVQKTTACTFGGDDLGTLYITTSWENLERGEDPLAGALFAVRPGVTGLPARPFAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000294.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000294.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fabab2868c3b554881f33da48d04c1d57684ce19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000294.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00246
+--------MRELQQQIIAEQGVRPQIDPAQEIERRVEFLVDYLEATGAAGFVLGISGGVD
+STVGGRLAQLAVERRRARLGAPDAVALGGP-EAPRGA--PAADEAPSPQRPQFTAVRLPY
+RQQKDEADARAAMDFVDADREITLDIAAGVEGIASAFVEATGDEIADFDKGNVKARMRMV
+AQYALAGAHRQLVIGTDHAAEAVTGFYTKFGDGGADVLPLSGLNKRQVRALGRELGAPEH
+LWNKVPTADLLDGNPGRTDEDELGMTYEHIDDYLEGGDIPEEAAEKLEGIWLRSRHKRTM
+PVTVHDDWWR
+>KBS0714_MOLHKGIG_00138
+--------MRELQQRIIAQQGVLPEIDPAAEVERRVAFLADYLAATGASGFVLGISGGVD
+STVGGRLAQLAVERRRAQLGVTDAVALGGPDTTPPGEAGVGADVVPSRENPRFTAVRLPY
+KVQHDEADARAAMDFVGADQDVTLNIAEAVQGLAAAFAEAVGEPISDYNQGNVKARIRMT
+AQYAVAGAHGQLVIGTDHAAEAVTGFYTKFGDGGADVLPLAGLNKRQVRALGRELGAPEP
+LWNKVPTADLLDGTPGQTDEAELGMTYEDIDDYLEGKDVPTEVAEKLEGIWLRSRHKRTT
+PVTIHDDWWR
+>KD337_NAFOICDF_00180
+MPEPYAGAMRELQQQIIAEMGVRPEVDPAAEVEARVRFLVDYLEATGASGFVLGISGGVD
+STTAGRLAQLAVERRRAELGTE-----------------AGDDAAPSRENPRFTAVRLPY
+RVQADEADATAAMDFVGADGRVTLNIAEAVAGMASAFQEATGEPISDYNQGNVKARMRMV
+AQYAIAGAHGQLVIGTDHAAESITGFFTKFGDGGADVLPLAGLDKRQVRAVAKELGAPEH
+LWAKVPTADLLDGSPGRADEDELGLSYEHIDDYLEGREIPEEAAEKLEGVWRRSRHKRTT
+PVTIHDDWWR
+>SA211_MHAAABBN_02152
+--------MRELQQRIIAQQGVLPEIDPAAEVERRVAFLADYLAATGASGFVLGISGGVD
+STVGGRLAQLAVERRRAQLGVPDAVALGGPGTTPPGEAGVGADVVPSRENPRFTAVRLPY
+KVQHDEADARAAMDFVGADQDVTLNIAEAVQGLAAAFAEAVGEPISDYNQGNVKARIRMT
+AQYAVAGAHGQLVIGTDQAAEAITGFYTKFGDGGADVLPLAGLNKRQVRALGRELGAPEP
+LWNKVPTADLLDGTPGQTDEAELGMTYEDIDDYLEGKDVPTEVAEKLEGIWLRSRHKRTT
+PVTIHDDWWR
+>TT9_LFPAFLNI_00146
+--------MRELQQRIIAQQGVLPEIDPAAEVERRVAFLVDYLAATGASGFVLGISGGVD
+STVGGRLAQLAVERRRAQLGVTDAVALGGPGTTPPGEAGVGADVVPSRENPRFTAVRLPY
+KVQHDEADARAALDFVGADQDVTLNIAEAVQGLAAAFAEAVGEPISDYNQGNVKARIRMT
+AQYAVAGAHGQLVIGTDQAAEAITGFYTKFGDGGADVLPLAGLNKRQVRALGRELGAPEP
+LWNKVPTADLLDGTPGQTDEAELGMTYEDIDDYLEGKDVPTEVAEKLEGIWLRSRHKRTT
+PVTIHDDWWR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000302.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000302.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a63cd6d7825e429c236407c42a716ed0ee9a5a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000302.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00260
+M-------------------------------------ITPGVFAISSGTAEILPDPWTD
+GVYLLKVNGVESSQLNPDRPETLGFEYMRWAAAVLAHRFAPDAERLRVLHLGGAGCTFAR
+WVTHTWPQAHQLAVELDAGLAELARTHFDLPRAPQLKIRVGEAGQVLAGLREATREVVFR
+DVFA--PADPLSLAPDSPHVTPAHLTGADAAAHAARVLVPGGVYVLNIGGGPDLASVRRE
+VAALRTAFAHVEVMADPAMLKGRRRGNVIAAASSVPLA---AEELGG---RAALARALRS
+DALPAQLVDDVARFAGGLAPDPTPLVQASDGTSEGASTQASPGPAQ
+>KBS0714_MOLHKGIG_00125
+MSRRSGRSSGRSSAASSSSRGSAARRGR----AAEPEGIVPGVHEISHGTAEIREDPYEP
+GAFVLYVNGVESSPLDPDHPERMGFEYMRWAVAAVRAHW-PEPTPLRALHLGGAGCALAR
+WVDHAHPGSHQTAVEIDAGLAALARERFGLPRAPALRIRVADAAEVLATAHPASRDLIIR
+DVFAPDPTDLTG----ARHITPPGLTGLDAARAAARVLAPGGLYVLNVGGGPDLTSVRAD
+VAAVVAAFEHVEVIADPPMLKGRRRGNVIVAASDAPVARPAADAPPGSDPRDRLARALRM
+DAFPARLAEDPRGFPAGVAPGITGLVPGPEA---------------
+>KD337_NAFOICDF_00194
+M-------------------------------------ITPGTFPISSGTAEIVPDPWTD
+GVFLLKVNGVESSQLNPDRPETLGFEYMRWAAAVLTHRFAPDA-RLRVLHLGGAGCTFAR
+WVTHTYPASHQLAVELDAGLAAVAREHFDLPRAPQLKIRVGEAGEVLAGLRDATREVVFR
+DVFAPDPADPTG----ALHVTPAHLTGLDAAAHAARVLTPGGVYLLNIGGGPDLTSVRRE
+VAALTETFAHVEVMADPAMLKGRRRGNVIAAASSAPLS---ADGLGG---RSALARALRS
+DALPAQLLDDVVAFTAGLTPDATPLVTPAEG---------------
+>SA211_MHAAABBN_02139
+M-----------------SRRSSARRGRAAGGSAGPAGIEPGVHAITHGTAEIREDAFEP
+DAFILYVNGVESSPLDPERPERMAFEYMRWAAAAVRAHW-PEPTPLRALHLGGAGCALAR
+WVDHAYPGSHQTAVEIDAGLAALARERFGLPRAPALRIRVADAAEVLATAHPASRDLIIR
+DVFAPDPTDLTG----ARHITPPGLTGLDAARAAARVLAPGGLYVLNVGGGPDLTSVRAD
+VAAVVAAFEHVEVIADPPMLKGRRRGNVIVAASDAPVARPAADAPPGSDPRDRLARALRM
+DAFPARLAEDPRGFPAGVAPGITGLVPGPEA---------------
+>TT9_LFPAFLNI_00133
+M-----------------SRRSSARRGRAAGGAAGPAGIEPGVHAITHGTAEIRENAFEP
+GAFILYVNGVESSPLDPERPERMAFEYMRWAAAAVRAHW-PEPTPLRALHLGGAGCALAR
+WVDHAYPGSHQTAVEIDAGLAALARERFGLPRAPALRIRVADAAEVLATAHPASRDLIIR
+DVFAPDPTDLTG----ARHITPPGLTGLDAARAAARVLAPGGLYVLNVGGGPDLTSVRAD
+VAAVVAAFEHVEVIADPPMLKGRRRGNVIVAASDAPVARPAADAPPGSDPRDRLARALRM
+DAFPARLAEDPRGFPAGVAPGITGLVPGPEA---------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000304.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000304.fa
new file mode 100644
index 0000000000000000000000000000000000000000..30f81dd335714b2d6387cecbf519e2796e380fe3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000304.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00262
+MIVAFSVAPSGTPADAAHQP-GDEDSASVHRAVAAAVAVVRESGLPHRTSSMFTEIEGDW
+DEVMDVVRGAVDAVAPYGSRVSLVLKADIRPGHTGELDGKLARLEAALASDDVS------
+------
+>KBS0714_MOLHKGIG_00123
+MIVAFSVAPSGQPADSAHLP-GDADTASVHRAVAAAVAVVRASGLPHRTSSMFTEIEGDW
+DEVMEVVRGAVDAVSSYGSRVSLVLKADIRPGHSGELDGKLERLEAALAEDGNGDAADAR
+------
+>KD337_NAFOICDF_00196
+MIVAFSVSPSGAPADAAYAPSSDGDSASVHRAVAAAVAVVRASGLPHRTSSMFTEVEGEW
+DEVMGVVKRAVEAVEPYGSRVSLVLKADIRRGRTGELDGKLERLEAALT--DGTPATPDR
+FRA---
+>SA211_MHAAABBN_02137
+MIVAFSVAPSGQPADSAHLP-GDADTASVHRAVAAAVAVVRASGLPHRTSSMFTEIEGDW
+DEVMEVVRGAVDAVSSYGSRVSLVLKADIRPGHTGELDGKLERLESALAEDEGRRAAPAP
+HDGDAG
+>TT9_LFPAFLNI_00131
+MIVAFSVAPSGQPADAEHLP-GDADTASVHRAVAAAVAVVRASGLPHRTSSMFTEIEGEW
+DEVMEVVRAAVDAVSPYGTRVSLVLKADIRPGRTGELDGKLERLESALAEDEGRRAAPAP
+RDGDAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000305.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000305.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5ecf4897f8a69b4c5bb975fcd8b279afb791a236
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000305.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00263
+MPHT-------ADRGHPVHNPDIVGFTEAELNETPIKPRWNSLGPGIVAAATGVGAADLV
+ATLTAGSRYGYMLLWAVVLGVIFKIVLVEGVGRWYLSTGKTIFQGWRQLGSWTSWYFGPY
+ILIWGFVYGATAMSSTAIPLAALFPAVDAKVFAIAAGLIGLALVWLNKYGLIEKLMTALI
+GVMFVTVLISAALTAPNVGEILSGLVPRIPSGDPQVMFYVLGLAGGVGGTITLGAYAYWL
+REKGWNVPKYMKVMKFDNATSYVLTGIFVIATMIMGVELLHSAGLAISSGDKGLLDVGNV
+LAERYGQVWSYVFLIGFFAASFSSLLGVWHGVSLMFADFWTNFRRPADELDQDDAPSLAS
+KPARFYLLWLTILPMSLLFLDRPIFLILLYGTLGALFMPFLAVTLLFLNNRKDVPVQHRN
+GWIRNILLGLTAAVFVAIGVNELIKALQSVLGG
+>KBS0714_MOLHKGIG_00122
+MATR-------ADRGRPVHNPDIIGFTDAELNETPIRPKWNSLGPGIVAAATGVGAADLV
+ATLTAGSRYGYMLLWAVILGVIFKIVLVEGVGRWYLSTGKTIFQGWRSLGSWTSWYFGPY
+ILIWGFVYGATAMSSAALPLAALFPGVDMKVYAIGLGLVGLGLVWLNRYGLIEKLMAVLI
+GVMFLTVLLSAALTAPNVGDILAGLVPRIPSGDPDVMFYVLGLAGGVGGTITLGAYAYWL
+REKGWNVPKYMRVMKFDNATSYILTGIFVIATMIMGVELLHSAGLAISSGDRGLLDVGNV
+LAERYGQAYSVVFLVGFFAASFSSLLGVWHGVSLMFADFWTNFRRPADELDQDDAPSLAS
+KPGRFFLLWLTFPPMTLLFLDRPIFLILLYGTLGALFMPFLAVTLLFLNNKKEVPAQFRN
+GWIRNTLLGLTAAVFVAIGVNELWKALQPLIGG
+>KD337_NAFOICDF_00197
+MSHTTPPGHGLVDRHHPVHDPDIVGFTEAELNETPIKPKWNSLGPGIVAAATGVGAADLV
+ATLTAGSRYGYMLLWAVVLGVVFKIVLVEGVGRYYLSTGKTIFQGWRGLGSWTSWYFGPY
+ILIWGFVYGATAMSSTALPLAALFPGVDSKVFAIASGLVGLGLVWLNRYGLVEKVMTVLI
+GVMFVTVLISAALTVPNLGDILGGLVPRIPSGDPDVMFYVLGLAGGVGGTITLGAYGYWL
+REKGWNTPKYMRVMRFDNTVSYVLTGVFVIATMIMGVELLHSAGIAISSGDKGLLDVGDV
+LAQRYGDVWATVFLIGFFAASFSSVIGVWHGVSLMFADFWTNFRRPADELDQDDAPSLAS
+KPGRFYLLWLTFPPMVLLFLDRPIFLILLYGTLGALFMPFLAVTLLFLNNSRRVPGKFRN
+GWVRNVLLALTTAVFLVIGGNELLKALKPLIGG
+>SA211_MHAAABBN_02136
+MAHA-------VDPGRPVHNPDIVGFTDAELNETPIRPRWNSLGPGIVAAATGVGAADLV
+ATLTAGSRYGYMLLWAVVLGVIFKIVLVEGVGRYYLSTGKTIFQGWRTLGAWTSWYFGPY
+ILIWGIVYGATAMSSTALPLAALFPGVDSKVFAIASGLIGLGLVWLDRYRLIEWLMTVLI
+GVMFVTVLLSAALTVPNLGAILAGLVPRLPSGDPQAMFYVLGLAGGVGGTITLAAYGYWL
+REKGWNVPKYLKVMRFDNATSYILTGIFVIATMVMGVELLHSAGLAISSGDKGLLDVGDV
+LAERYGSAWSTVFLIGFFAASFSSLLGVWHGVSLMFADFWTNFRRPAEELDQDDAPSLSS
+KPGRFFLLWLTLPPMALLFLDRPIFLILLYGTLGALFMPFLAVTLLFLNNTKDVPRQFRN
+GWVRNTLLGLTAAVFVAIGVNELIKALQPVLGG
+>TT9_LFPAFLNI_00130
+MATR-------ADRGRPVHNPDIIGFTDAELNETPIRPKWNSLGPGIVAAATGVGAADLV
+ATLTAGSRYGYMLLWAVVLGVIFKIVLVEGVGRYYLSTGKTIFQGWRTLGAWTSWYFGPY
+ILIWGIVYGATAMSSTALPLAALFPGVDSKVFAIAAGLIGLGLVWLDKYRLIEWLMTVLI
+GVMFVTVLLSAALTAPNLGEILAGLVPRLPSGDPQAMFYVLGLAGGVGGTITLAAYGYWL
+REKGWNVPKYLKVMRFDNATSYILTGIFVIATMVMGVELLHSAGLAISSGDKGLLDVGDV
+LAERYGSAWSTVFLIGFFAASFSSLLGVWHGVSLMFADFWTNFRRPAEELDQDDAPSLSS
+KPGRFFLLWLTLPPMALLFLDRPIFLILLYGTLGALFMPFLAVTLLFLNNTKDVPRQFRN
+GWVRNTLLGLTAAVFVAIGVNELIKALQPVLGG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000312.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000312.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1672add63f6f46c88c3de3fa33270a0004fa7012
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000312.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00280
+MSKRIQAKDVDVYYGKFKAVEGVNIDIAPRTVTAFIGPSGCGKTTFLRAINRMHEVLPGA
+HVEGQLLLDGEDVYGPGVDPVTVRSQIGMVFQRPNPFPTMSIRDNVLAGYKLNGTRLSRS
+RADEIVEKSLRGANLWNEVKDRLDKPGSGLSGGQQQRLCIARSVAVSPDVILMDEPCSAL
+DPISTLAVEDLINELKEQYTVIIVTHNMQQAARVADKTAFFNIQGIGQPGKLIEFDDTNV
+IFNNPSNQQTEDYVSGRFG
+>KBS0714_MOLHKGIG_00110
+MSKRIQAIDVDVFYGKFKAVEGVNIDIAPRSVTAFIGPSGCGKTTFLRSINRMHEVLPGA
+TVDGQLLLDGEDIYGPGVDPVRVRSQIGMVFQRPNPFPTMSIRDNVLAGYKLNGTRLNKS
+RADELVEKSLRGANLWNEVKDRLDKPGSGLSGGQQQRLCIARSIAVQPDVILMDEPCSAL
+DPISTLAVEDLINELKEEYTVIIVTHNMQQAARVADKTAFFNIQGVGKPGKLIEYDDTNV
+IFNNPSSQQTEDYVSGRFG
+>KD337_NAFOICDF_00221
+MSKRIQAKDVDVYYGKFKAVEGVSIDIAPRTVTAFIGPSGCGKTTFLRAINRMHEVLPGA
+HVEGQLLLDGEDVYGPGVDPVTVRSQIGMVFQRPNPFPTMSIRDNVLAGYKLNGTRLTKS
+RADEIVEKSLRGANLWNEVKDRLDKPGSGLSGGQQQRLCIARSVAVEPDVILMDEPCSAL
+DPISTLAVEDLINELKEDYTVIIVTHNMQQAARVADKTAFFNIQGIGQPGKLIEYAETNT
+IFNNPSNQQTEDYVSGRFG
+>SA211_MHAAABBN_02123
+MSKRIQAIDVDVFYGKFKAVEGVNIDIAPRSVTAFIGPSGCGKTTFLRSINRMHEVLPGA
+TVDGQLLLDGEDIYGPGVDPVRVRSQIGMVFQRPNPFPTMSIRDNVLAGYKLNGTRLNKS
+RADELVEKSLRGANLWNEVKDRLDKPGSGLSGGQQQRLCIARSIAVQPDVILMDEPCSAL
+DPISTLAVEDLINELKEEYTVIIVTHNMQQAARVADKTAFFNIQGVGKPGKLIEYDDTNV
+IFNNPSSQQTEDYVSGRFG
+>TT9_LFPAFLNI_00105
+MSKRIQAVDVDVFYGKFKAVEGVNIDIAPRSVTAFIGPSGCGKTTFLRSINRMHEVLPGA
+TVDGQLLLDGEDIYGPGVDPVRVRSQIGMVFQRPNPFPTMSIRDNVLAGYKLNGTRLNKS
+RADELVEKSLRGANLWNEVKDRLDKPGSGLSGGQQQRLCIARSIAVQPDVILMDEPCSAL
+DPISTLAVEDLINELKEEYTVIIVTHNMQQAARVADKTAFFNIQGVGKPGKLIEYDDTDV
+IFNNPSSQQTEDYVSGRFG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000313.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000313.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a5b48c872e35fb207ab3f2f5fd90a948f0b4b284
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000313.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00281
+MSTAIDDVSTRQDTPPSKHRQNSLTAGQKPGWVWMAIAAAAVLLGLGIEALLSGAAPFSE
+DFSLARFVVLAGVLYIAGMYLVTRVMENRRRASDGLWKNLVWTAFLIALVPLVSVIWTVL
+EGGGPTLLSNPQVLWNDMDGVTGATDAAYDQAGSPAGGLPGGFAHALIGTLVITIIATLI
+AVPIGLLASIYLVEYGRDGWLSRAITFFVDVMTGIPSIVAGLFAYAAMTVLLELIMGPGP
+AALQAVKMGFTAAVALTVLMIPVVVRSTEEMLRVVPNELREGSYALGVRKWRTIFKVVLP
+TAISGIASGVTLAIARVTGETAPILVTAGYAMTTNWNAFDNWMTALPVYIYRQIVSPTSP
+TAADPSMARAWSAALVLIFIVMALNLLARVIAKAFAPKTGR
+>KBS0714_MOLHKGIG_00109
+MSTV--STSPRATEDSVTPRRHSLTEGQKPGWTWMAVAAAAAVVAAGLTVLLSGA-----
+-FNVVGFVIIAAILYIAGLYVATRVMENRRRAADGLCRNLVWLAFLVALVPLVSVLWSVL
+SAGLPTLIANPQIMAYDMKGITGIDDSAWVEDGKPAGGLAGGFGHALIGTVVITIIATLI
+SVPIGMLTSIYLVEYSRGGWFSRAIVFFVDVMTGIPSIVAGLFAYAAITWVLTLVTGSKS
+TALQSVQMGLTAAIALSVLMIPVVVRSTEEMLRVVPNELREGAYALGVRKWQTIAKVVLP
+TAISGIASGVTLAIARVAGETAPILVTAGFATSINWNPFDNWMTALPVYIYRQLVAPTSP
+TAADPSTARAWAAALLLVTIVMLLNLAARFIAKAFAPKKGR
+>KD337_NAFOICDF_00222
+MSTALNDTPTRENTPASKHTQNSLTAGQKPRWTWMAVAAGAVVLGLGLEALLAGGFA---
+DFSIARFIILAAILFVAGMYVATRVLENRRQATDGLWRNLVWAAFLIALVPLISVLWSVV
+ADGGATLFGNPQLLVNDMQGVTGVTDAQYVQAGEPMGDLPGGFAHALVGTFLITVIATVI
+AVPIGLLTSIYLVEFGRDGWLSRAIIFFVDVMTGIPSIVAGLFAFAAMSVVLEMVMGSGP
+KALQSVKMGLTAAIALTVLMIPVVVRSTEEMLRVVPNELREGSYALGVRKWRTIFKVVLP
+TAISGIASGITLAIARVTGETAPILVTAGFASAVNWNPFDNWMTALPVYIYRQLVAPTSP
+TAMDASTSRAWAAALVLIIIVMVLNLLARIVAKAFAPKTGR
+>SA211_MHAAABBN_02122
+MSTV--STSPRATEDSVTPRRHSLTEGQKPGWTWMAVAAAAAVVAAGLTVLLSGA-----
+-FNVVGFVIIAAILYIAGLYVATRVMENRRRAADGLCRNLVWLAFLVALVPLVSVLWSVL
+SAGLPTLIANPQIMAYDMKGITGIDDSAWVEDGKPAGGLAGGFGHALIGTVVITIIATLI
+SVPIGMLTSIYLVEYSRGGWFSRAIVFFVDVMTGIPSIVAGLFAYAAITWVLTLVTGSKS
+TALQSVQMGLTAAIALSVLMIPVVVRSTEEMLRVVPNELREGAYALGVRKWQTIAKVVLP
+TAISGIASGVTLAIARVAGETAPILVTAGFATSINWNPFDNWMTALPVYIYRQLVAPTSP
+TAADPSTARAWAAALLLVTIVMLLNLAARFIAKAFAPKKGR
+>TT9_LFPAFLNI_00104
+MSTV--STSPRATEDSVTPRRHSLTEGQKPGWTWMAVAAAAAVVAAGLTVLLSGA-----
+-FNVVGFVIIAAILYIAGLYVATRVMENRRRAADGLCRNLVWLAFLVALVPLVSVLWSVL
+SAGLPTLIANPQIMAYDMKGITGIDDSAWVEDGKPAGGLAGGFGHALIGTVVITIIATLI
+SVPIGMLTSIYLVEYSRGGWFSRAIVFFVDVMTGIPSIVAGLFAYAAITWVLTLVTGSKS
+TALQSVQMGLTAAIALSVLMIPVVVRSTEEMLRVVPNELREGAYALGVRKWQTIAKVVLP
+TAISGIASGVTLAIARVAGETAPILVTAGFATSINWNPFDNWMTALPVYIYRQLVAPTSP
+TAADPSTARAWAAALLLVTIVMLLNLAARFIAKAFAPKKGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000315.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000315.fa
new file mode 100644
index 0000000000000000000000000000000000000000..19fcefacd619b4a1c91f57129e4d234390046bed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000315.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00283
+MKALRFGRSAALLSVAALALTAC----------------GGNGGGDASSSAPA-GGSSSA
+--------AAEGSGAAA----------ASGTLIGGGASSQEAAMTAWSEGVKATSPELTV
+QYSPDGSGAGREGFLGGAFSFAGSDAALKEDEAEQAKQICGDNGAFHVPAYISPIAIAYN
+LEGVDEVKMDAETIAKVFSKEITTWNDPAIAEQNEGVELPDTPITVVHRSDDSGTTENFT
+AYLTEAAGDAWKYDEVETWPSEITAESAQGTRGVVGQAAQTDGAITYADASAVGELGTVA
+VKVGEEYVPYSSDAAAKTVSASVQNEDGSIELDRATTEAGVYPIVLVSYHIYCNQYQNQE
+TADQVKAFASYVVSEDGQKAAEEAAGNAPIGAETRDAAVERIEAITA-G
+>KBS0714_MOLHKGIG_00107
+MKALRFGRSAALLSVAAIALTAC------------SSADSGNGGSD---------ASGSA
+--------GGEQGTTSE----------VQGNLVGAGASSQEAAMTAWTQGVTETAPNLTV
+QYSPDGSGAGREKFLAGATSFAGSDAALKEEEAESAKENCGDEGAFHVPAYISPIAVAYN
+LPGVDDVKMDAETIAKVFSGEIKNWNDEAIAAQNEGVELPDTPITVVHRSDDSGTTENFT
+AYLTEAAGDAWSYDEVETWPSDITAESAQGTKGVVGLASQTEGAITYADASAVGELGTVS
+VKVGEEYVKYSAEAAAATVEKSEAKEDGSIELDRATDESGVYPVVLVSYHIYCNQYESQE
+TVDQVKAFAEYVVSEDGQKTAEESAGNAPISEDTRKKAMERIEAISVKG
+>KD337_NAFOICDF_00224
+MKALRFGRSAALLSVAALALTACGGGNDSASSSSSAASSSAAGSSSASSSA---AGSSSA
+SSSAAESSSASGSSSAAQGGYAIDVPTASGTLMGSGASSQEAAMTAWTEGVKATSPELQV
+QYSPDGSGAGRKAFLSGAATFAGSDAALKDEEKTQAQEVCGPDGAFHVPAYVSPIAVAYN
+LEGVDSLNLDADTIAKIFSKKITKWNAPEIAALNEGVELPDTAITVVHRADESGTTENFT
+AYLDQVAPEAWTYGKVKEWPGDITAESAQGTKGVVSQAAATNGAITYADESGVGSLKTAK
+VGKDGKFAEISPEAAAKIVADGKKQDDGSIELDRANAGEGVYPIVLVSYHIFCNQYGDQE
+TVDQVKAFASYVISEDGQKAAQEASKSAPLDAELAKEAKTRIDAIKV-G
+>SA211_MHAAABBN_02120
+MKALRFGRSAALLSVAAIALTAC------------SSADSGNGGSD---------ASGSA
+--------GGEQGTTSE----------VQGNLVGAGASSQEAAMTAWTQGVTETAPNLTV
+QYSPDGSGAGREKFLAGATSFAGSDAALKEEEAESAKKNCGDEGAFHVPAYISPIAVAYN
+LPGVDDVKMDAETIAKVFSGEIKNWNDEAIAAQNEGVELPDTPITVVHRSDDSGTTENFT
+AYLTEAAGDAWSYDEVETWPSDITAESAQGTKGVVGLASQTEGAITYADASAVGELGTVS
+VKVGEEYVKYSAEAAAATVEKSEAKEDGSIELDRATDESGVYPVVLVSYHIYCNQYESQE
+TVDQVKAFAEYVVSEDGQKTAEESAGNAPISEDTRKKAMERIEAISVKG
+>TT9_LFPAFLNI_00102
+MKAHRFGRSAALLSVAAIALTAC------------SSADSGNGGSDASGSAGGEHASGSA
+--------GGEQGTTSE----------VQGNLVGAGASSQEAAMTAWTQGVTEIAPNLTV
+QYSPDGSGAGREKFLAGATSFAGSDAALKEEEAESAKENCGDEGAFHVPAYISPIAVAYN
+LPGVDEVKMDAETIAKVFSGEIKNWNDEAIAAQNEGVELPDTPITVVHRSDDSGTTENFT
+AYLTEAAGDAWSYDEVETWPSDITAESAQGTKGVVGLASQTEGAITYADASAVGELGTVS
+VKVGEEYVKYSAEAAAATVEKSEAKEDGSIELDRATDESGVYPVVLVSYHIYCNQYESQE
+TVDQVKAFAEYVVSEDGQKTAEESAGNAPISEDTRKKAMERIEAISVKG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000318.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000318.fa
new file mode 100644
index 0000000000000000000000000000000000000000..50523bf9c6dc7b157646081fb7a504a402cf398a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000318.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00287
+MPAHETAVPPSVDVPRLHDAVLDWFAVHARDLPWRSPDCPPWGVLVSEIMLQQTPVARVL
+PRWHAWLERWPTAADLAAAPTADVLTAWDRLGYPRRALRLQEAARAIVERHSGEVPADPA
+ALRALPGIGEYTAAAVSSFAFGLPETVVDTNVRRVIARAVGGQALPGRSLTRAEMRRAHA
+LMPEDPDRAQAWNAGVMELGALVCTARSPACERCPLADACAWVAAGSPPPEQAPRGQAWA
+GTDRQVRGAVMAAVREHGRVAGDGLRAVVVAGGRLGAHRPGDAQWERCVAGLLADGLLAR
+DDDGALAFPS
+>KBS0714_MOLHKGIG_00103
+MPAPAPLVPPTVDVPHLHDAMLGWFAVHARDLPWRSPDCSPWGVLVSEIMLQQTPVVRVL
+PRWREWLERWPTPADLAAAPTADVLTAWDRLGYPRRALRLQEAARAVVGRHDGRVPADPA
+ALRALPGIGEYTAAAVASFAFGVPETVVDTNVRRVIARAVAGEALPGRSLTRAEMRRAQA
+LMPEDPARANAWNAAVMELGALVCTARSPACDRCPLAETCAWVAAGSPPPVEVPRGQAWA
+GTDRQVRGAVMAAVREHGRVAEAEVPAVVVAGGRLGSHRPDDAQWARCVAGLVSDGLLAR
+DDDGGLTFPA
+>KD337_NAFOICDF_00233
+MPAHDD-AAPRPDLTALQDEVLDWFAAHGRDLPWRDPDCPPWGVLVSEIMLQQTPVVRVL
+PRWRAWMERWPTPADLAAAPTADVLTAWDRLGYPRRALRLQEAARAIVERHGGEVPADPA
+ALRALPGIGEYTAAAVSSFAFGIPETVVDTNVRRVLARALRGEGLPGRTLTRAEMAAAHA
+ALPADEHRANRWNAAVMELGALVCTARSPACDRCPIRARCAWVAAGSPAPEVARRGQAWV
+GTDRQVRGAVMAAVREHGRVPRGGLREAVDGTGRLGAHTPDDAQWERAVAGLLGDGLLVA
+HDDGALAFPA
+>SA211_MHAAABBN_02116
+MPAPAPLVPPTVDVPRLHDAVLGWFAVHARDLPWRSPDCSPWGVLVSEIMLQQTPVVRVL
+PRWREWLERWPTPADLASAPTADVLTAWDRLGYPRRALRLQEAARAVVERHDGRVPADPA
+ALRALPGVGEYTAAAVASFAFGVPETVVDTNVRRVIARAVAGEALPGRSLTRAEMRRAQA
+LMPEDPARANAWNAAVMELGALVCTARSPACDRCPLAETCAWVAAGSPPPVEVPRGQAWA
+GTDRQVRGAVMAAVREHGRVAEAEVPAVVVAGGRLGSHRPDDAQWARCVAGLVSDGLLAR
+DDDGGLTFPD
+>TT9_LFPAFLNI_00098
+MPAPAPLVPPTVDVPRLHDAVLGWFAVHARDLPWRSPDCSPWGVLVSEIMLQQTPVVRVL
+PRWREWLERWPTPADLASAPTADVLTAWDRLGYPRRALRLQEAARAVVERHDGRVPADPA
+ALRALPGVGEYTAAAVASFAFGVPETVVDTNVRRVIARAVAGEALPGRSLTRAEMRRAQA
+LMPEDPTRANAWNAAVMELGALVCTARSPACDRCPLAETCAWVAAGSPPPVEVPRGQAWA
+GTDRQVRGAVMAAVREHGRVAEAEVPAVVVAGGWLGSHRPEDAQWARCVAGLVSDGLLAR
+DADGGLTFPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000321.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000321.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e4995f4c16a8744bfe99b074dbc08477b9181e4a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000321.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00291
+MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEGEGVAAKALESMDISLGAVREKVQEDIGQGQQNPPGHIPF
+TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQTVIQLLSGYQGGAQGGKETAGAGV
+GQGGEAGQNAGSVVLDQFGRNLTAAAHDGKLDPVIGRAGEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIDRG
+DVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGE
+LQTIGATTLDEYRKHIEKDAALERRFQPIQVPEPSVEDATEILRGLRDRYEAHHRVSITDGALKAAATLADRYVSDRHLP
+DKAIDLIDEAGARLRIRRMTVPPEIKAYESRIAEVRTQKEAAIDGQDFEGAARLRDQEQQLEDERRQKEEAWRTGADSDV
+ATVDEELIAEVLSKSTGIPVFKLTAEETDRLRTMEDELHKRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTG
+VGKTELAKSLAEFLFGDEDALITLDMSEFQEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHQDLFN
+SLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGVMTGFQSATDTTTGYERMKGKVKEELRQHFRPEFLNRVDD
+VIVFPQLQKHEIVEIVDLFVSRLGKRLAEQDLSIELTQAAKDLLADRGYDPAMGARPLRRTIQQMVEDQLSEKILFGEIP
+AGSLITVDATGEGEGAELTFGFSGGREALEGAELPE--LEPGSGETVEAGRSA---------------------------
+>KBS0714_MOLHKGIG_00100
+MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEGEGVAAKALESMDISLGAVREKVQEDIGQGQQNPPGHIPF
+TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVQLGADLNRVRQTVIQLLSGYQGGAQGGKETAGAGV
+GQGGEAGQNAGSVVLDQFGRNLTAAAHDGKLDPVIGRAGEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIDRG
+DVPETLRDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGE
+LQTIGATTLDEYRKHIEKDAALERRFQPIQVAEPSVEDATEILRGLRDRYEAHHKVSITDGALKAAAGLADRYVSDRHLP
+DKAIDLIDEAGARLRIRRMTVPPEIKAYESRIAEVRTQKEAAIDGQDFEGAARLRDQEQQLGDERREKEQAWRTGADADV
+ATVDEDLIAEVLSKSTGIPVFKLTEEETDRLRNMEDELHRRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTG
+VGKTELAKSLAEFLFGDEDALITLDMSEFQEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHQDLFN
+SLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGVMTGFQSATDTTTGYERMKGKVKEELRQHFRPEFLNRVDD
+VIVFPQLQKHEIVEIVDLFVSRLGKRLAEQDLSIELTQSAKDLLADRGYDPAMGARPLRRTIQQMVEDQLSEKILFGEIP
+AGSLITVDATGEGEGAELTFAFSGGREALEGADLAE--LESGAGDPVDADRSV---------------------------
+>KD337_NAFOICDF_00237
+MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEGEGVAAKALESMDISLAAVREKVQEDIGQGQQNPPGHIPF
+TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVQLGADLNRVRQTVIQLLSGYQGGAQGGKETAGAGV
+GQGGSEGQNAGSVVLDQFGRNLTAAAHDGKLDPVIGRAQEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIERG
+DVPETLKGKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGE
+LQTIGATTLDEYRKHIEKDAALERRFQPIQVPEPSVEDATQILRGLRDRYEAHHKVSITDGALSAAASLADRYISDRHLP
+DKAIDLIDEAGARLRIRRMTVPPEVKAYEERIAEVKAQKEAAIDGQDFEGAARLRDQEKQLEEEREQKEQAWRAGQDAAV
+ATVDEDLIAEVLSLSTGIPVFKLTEEETDRLRNMEAELHQRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTG
+VGKTELAKSLAEFLFGDEDALITLDMSEFQEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHADLFN
+SLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGVMTGFQSSTDTSTGYERMKGKVREELRQHFRPEFLNRVDD
+VIVFPQLQKHEIVEIVDLFVSRLAKRLAEQDLSIELTPAAKDLLADRGYDPAMGARPLRRTIQQMVEDQLSEKILFGEIP
+AGSLITVDATGEGEGAELTFAFAGGRAALEGDDAAEPAALPAAADAPVEGREAPGADVPRGDDAGQDGPEAGGALGARLD
+>SA211_MHAAABBN_02113
+MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEGEGVAAKALESMDISLGAVREKVQEDIGQGQQNPPGHIPF
+TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVQLGADLNRVRQTVIQLLSGYQGGAQGGKETAGAGV
+GQGGEAGQNAGSVVLDQFGRNLTAAAHDGKLDPVIGRAGEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIDRG
+DVPETLRDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGE
+LQTIGATTLDEYRKHIEKDAALERRFQPIQVAEPSVEDATEILRGLRDRYEAHHKVSITDGALKAAAGLADRYVSDRHLP
+DKAIDLIDEAGARLRIRRMTVPPEIKAYESRIAEVRTQKEAAIDGQDFEGAARLRDQEQQLGDERREKEQAWRTGADADV
+ATVDEDLIAEVLSKSTGIPVFKLTEEETDRLRNMEDELHRRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTG
+VGKTELAKSLAEFLFGDEDALITLDMSEFQEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHQDLFN
+SLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGVMTGFQSATDTTTGYERMKGKVKEELRQHFRPEFLNRVDD
+VIVFPQLQKHEIVQIVDLFVSRLGKRLAEQDLSIELTQSAKDLLADRGYDPAMGARPLRRTIQQMVEDQLSEKILFGEIP
+AGSLITVDTTGEGEGAELTFAFSGGREALEGADLAE--LEPGAGDPVDADRSA---------------------------
+>TT9_LFPAFLNI_00095
+MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEGEGVAAKALESMDISLGAVREKVQEDIGQGQQNPPGHIPF
+TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVQLGADLNRVRQTVIQLLSGYQGGAQGGKETAGAGV
+GQGGEAGQNAGSVVLDQFGRNLTAAAHDGKLDPVIGRAGEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIDRG
+DVPETLRDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGE
+LQTIGATTLDEYRKHIEKDAALERRFQPIQVAEPSVEDATEILRGLRDRYEAHHKVSITDGALKAAAGLADRYVSDRHLP
+DKAIDLIDEAGARLRIRRMTVPPEIKAYESRIAEVRTQKEAAIDGQDFEGAARLRDQEQQLGDERREKEQAWRTGADADV
+ATVDEDLIAEVLSKSTGIPVFKLTEEETDRLRNMEDELHRRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTG
+VGKTELAKSLAEFLFGDEDALITLDMSEFQEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHQDLFN
+SLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGVMTGFQSATDTTTGYERMKGKVKEELRQHFRPEFLNRVDD
+VIVFPQLQKHEIVEIVDLFVSRLGKRLAEQDLSIELTQSAKDLLADRGYDPAMGARPLRRTIQQMVEDQLSEKILFGEIP
+AGSLITVDATGEGEGAELTFAFSGGREALEGADLAE--LEPGAGDPVDADRSV---------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000322.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000322.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d1864faec766e99ef6465ca5961fac37b93a1b1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000322.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00293
+MATFWEYFSVLAPSIGLGLIFWLVMRSLLRSDTAERESMGRRSTGEDARAAREEADAREW
+ARRRGGDDVPRRGDDSR--
+>KBS0714_MOLHKGIG_00098
+MAAFWDYFSVLAPSIGLGLIFWLVMRSLLRSDTGERESQARRLSGADARAAREEAEAREW
+AARRRAEGGPGADPEDRAR
+>KD337_NAFOICDF_00238
+MAAFWEYFSVLAPSVGIGLVFWLVMRSLLRSDTAEREARQRR--GEDARAAREEAEAREW
+AARRRGDAPAGPGGAERP-
+>SA211_MHAAABBN_02111
+MADFWDYFSVLAPSIGLGLIFWLVMRSLLRSDTGERESQARRLSGADARAAREEAEAREW
+AARRRAEGGPGADPEDRAR
+>TT9_LFPAFLNI_00093
+MAAFWDYFSVLAPSIGLGLIFWLVMRSLLRSDTGERESQARRLSGADARAAREEAEAREW
+AARRRAEGGPGADPEDRAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000323.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000323.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1fa3154f9228a804fa5dafb139c8c05265d7dbf7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000323.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00294
+MTSQNSANPQTSAVDHHDQQAVRAAKREQLLAAGREAYPVQVPRTHTLTEVREQFDG-HEPDWASGETVSVTGRVVFLRN
+TGKLCFATLQESGVDGEAVRLQVMVSLAAVGEDSLAQWKKAVDLGDFLSVTGEVIVSRRGELSIMASAWEMASKALRPLP
+VLHADLNEETRVRQRYADLIVRDEARRMVYTRAKVTSAVRRTLEGHGYVEVETPMLQLIHGGALARPFETHLNAFDQPMT
+LRIATELYLKRAVVGGIDRVYEIGRVFRNEGVDSTHSPEFTTLESYEAWADMHVMAERMQEIILAAADAVGAGRRIETDR
+GVIDLDGEWAWVSVYPGLSEAVGREITPDTDAETLRAIAAEHEVKVDPAWDAQKLVIELFGEIVEPTLMNPTFVHDYPPA
+AQPLARPHREDGRVIEAWDLIIGGMERGTAFSELIDPVIQRERLTAQSAMAAAGDDEAMQLDEDFLRALEYGAPPMGGIG
+LGIDRLVMLFTDAGIRETILFPLLKPEA
+>KBS0714_MOLHKGIG_00097
+MTTQNSA---SAAVDHHDQQAVRAAKREQLLASGREAYPVQVPRTHALAEVRERFDG-HEPDWTSGETVSVTGRVVFLRN
+TGKLCFATLQESGADGEAVRLQVMVSLAAVGEESLAEWKKVVDLGDFLSVTGEVIVSRRGELSIMASAWEMASKALRPLP
+VLHADLNEETRVRQRYADLIVREEARRMVYTRAKVTSAVRRTLEGHGYVEVETPMLQLVHGGALARPFETHLNAFDQPMT
+LRIATELYLKRAVVGGIDRVFEIGRVFRNEGVDSTHSPEFTTLESYEAWADMHVMAERMQEIILNAADAVGAGRRLETAK
+GVIDLDGEWAWVAVYPGLSEAVGREITPETDAETLRAIAAEHEVKVDPAWDAEKLVIELFGEIVEPTLMNPTFVYDYPPA
+AQPLARPHRSDDRVIEAWDLIIGGMERGTAFSELIDPVIQRERLTAQSAMAAAGDDEAMQLDEDFLRALEYGAPPMGGIG
+LGIDRLVMLFTDAGIRETILFPLLKPEA
+>KD337_NAFOICDF_00239
+MTPENPA---PAAVDHHDQQAVRAAKREQLLTSGRQAYPVQVPRTHSLAAVRAKFDGKHEAGWEEGPEVSVTGRVVFLRN
+TGKLCFATLQESGAAGEAVRLQVMVSLAEVGEESLGEWKKSVDLGDFLSVTGRVIVSRRGELSIQAAAWEMASKALRPLP
+VLHADLNEETRVRQRYTDLIVRDEAREMVYKRAKITSAVRRTLESHGYVEVETPILQLVHGGAQARPFETHLNAFDQDMT
+LRIATELYLKRAVVGGIERVYELGRVFRNEGVDSTHSPEFTTLESYEAWADMHVMADRIKEIILNAADAIGAGRRIETSR
+GVIDLDGEWAWVSVYPGLSEAVGREVTPDTDAETLRAIAAEHDVKVDPKWDAQKLVIELFGEIVEPTLMNPTFVYDYPPA
+AQPLARPNRDDDRVIEAWDLIIGGMERGTAFSELIDPVIQRERLTEQSLKAADGDDEAMQLDEDFLRALEYGAPPMGGIG
+LGIDRLVMLFTDAGIRETILFPLLKPEA
+>SA211_MHAAABBN_02110
+MTTQNSA---SAAVDHHDQQAVRAAKREQLLASGREAYPVQVPRTHALAEVRERFDG-HEPDWTSGETVSVTGRVVFLRN
+TGKLCFATLQESGADGEAVRLQVMVSLAAVGEESLAEWKKVVDLGDFLSVTGEVIVSRRGELSIMASAWEMASKALRPLP
+VLHADLNEETRVRQRYADLIVRDEARRMVYTRAKVTSAVRRTLEGHGYVEVETPMLQLVHGGALARPFETHLNAFDQPMT
+LRIATELYLKRAVVGGIDRVFEIGRVFRNEGVDSTHSPEFTTLESYEAWADMHVMAERMQEIILNAADAVGAGRRLETAK
+GVIDLDGEWAWVAVYPGLSEAVGREITPDTDAGTLRAIAAEHEVKVDPAWDAEKLVIELFGEIVEPTLMNPTFVYDYPPA
+AQPLARPHRSDDRVIEAWDLIIGGMERGTAFSELIDPVIQRERLTAQSAMAAAGDDEAMQLDEDFLRALEYGAPPMGGIG
+LGIDRLVMLFTDAGIRETILFPLLKPEA
+>TT9_LFPAFLNI_00092
+MTTQNSA---SAAVDHHDQQAVRAAKREQLLASGREAYPVQVPRTHALAEVRERFDG-HEPDWASGETVSVTGRVVFLRN
+TGKLCFATLQESGADGEAVRLQVMVSLAAVGEESLADWKKVVDLGDFLSVTGEVIVSRRGELSIMASAWEMASKALRPLP
+VLHADLNEETRVRQRYADLIVREEARRMVYTRAKVTSAVRRTLEGHGYVEVETPMLQLVHGGALARPFETHLNAFDQPMT
+LRIATELYLKRAVVGGIDRVFEIGRVFRNEGVDSTHSPEFTTLESYEAWADMHVMAERMQEIILNAADAVGAGRRLETAK
+GVIDLDGEWAWVAVYPGLSEAVGREITPETDAETLRAIAAEHEVKVDPAWDAEKLVIELFGEIVEPTLMNPTFVYDYPPA
+AQPLARPHRSEDRVIEAWDLIIGGMERGTAFSELIDPVIQRERLTAQSAMAAAGDDEAMQLDEDFLRALEYGAPPMGGIG
+LGIDRLVMLFTDAGIRETILFPLLKPEA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000324.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000324.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ff16823ce088dbd51321b04fbc6d737a48003ab3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000324.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00295
+MSPRFLLMTEIPEPGLGMLREAGEVTLGSEVGGNDALPALAASGDYDVVVCALAQKFDAD
+VLAQARLKGIANYAVGYNNVDVAAATEAGIAVGNTPDVLTDATADIALLLILGVSRRAHE
+GEAMMRAGEFTGWRADLLVGKDVKGATLGLAGFGRIGKAVAERALAFGMDVVFAPRPPAH
+REVAPEELGELAGRVEQVRWEELVERSDFLSLHVPLTADTEHLVDADVLARMKDDAVLIN
+TARGPVVDEAALVEALRAGRLFGAGLDVYEDEPAMAPGLAELDNVMLLPHLGSATRDTRA
+AMAELTARNAIAMATGGEVPALVNPDVRR
+>KBS0714_MOLHKGIG_00096
+MTPRFLLMTRLPEPGLGMLREAGEVVDGADVGGDAALARLVASGDYDVVVAALDQKFTAD
+VLADARIRGIANYAVGYNNVDVAAATRRGIAVGNTPDVLTDATADIAMLLILGVTRRAPE
+GERMVREGRFHGWAPDLLVGRDVRGATLGLAGFGRIGKAVAERALAFGMEVVFAPRPPAH
+REVAAAELGDLAGRVRQVRWEELVEVADVLSLHVPLTDDTHHLVDADVIAKMKDDAVLVN
+TARGPVVDEAALVTALREGRLFGAGLDVYEDEPALAPGLAELENVMLLPHLGSATRDTRA
+AMAELAARNAIAMATGAEAPALVNPEVRG
+>KD337_NAFOICDF_00240
+MSPRFLLMADLPEPGLGMLREAGEVVRGGDVGGNAALADLCASGEYDVVVGALDQRYDAD
+LLARARVKGIANYAVGFDNVDVPAATEHGILVGNTPDVLTAATADIALLLILGVTRRAVE
+GERMMREGRFEGWRADMLVGKDVVGATLGLAGFGRIGRAVAERALAFGMEVVFAPRPPAH
+REVPAEELGDLAGRVRQVRWEELVETADVLSLHVPLTEDTRHLVDEDVIARMKDDAVLVN
+TARGPVVDEAALVTALREGRLFGAGFDVYEDEPAMAEGLAELPNVMLLPHLGSATRDARA
+AMAELTARNAIGMATDGEAPALVNPEARG
+>SA211_MHAAABBN_02109
+MTPRFLLMTRLPEPGLGMLREAGEVVDGADVGGDAALARLVASGDYDVVVAALDQKFTAD
+VLADARIRGIANYAVGYNNVDVAAATRRGIAVGNTPDVLTDATADIAMLLILGVTRRAPE
+GERMVREGRFHGWAPDLLVGRDVRGATLGLAGFGRIGKAVAERALAFGMDVVFAPRPPAH
+REVAAEELGDLAGRVRQVRWEELVEVADVLSLHVPLTDDTHHLVDAEVIAKMKDDAVLVN
+TARGPVVDEVALVTALREGRLFGAGLDVYEDEPALAPGLAELENVMLLPHLGSATRDTRA
+AMAELAARNAIAMATGAEVPALVNPEVRG
+>TT9_LFPAFLNI_00091
+MTPRFLLMTRLPEPGLGMLREAGEVVDGADVGGDAALARLVASGDYDVVVAALDQKFTAD
+VLADARIRGIANYAVGYNNVDVAAATRRGIAVGNTPDVLTDATADIAMLLILGVTRRAPE
+GERMVREGRFHGWAPDLLVGRDVRGATLGLAGFGRIGKAVAERALAFGMDVVFAPRPPAH
+REVAAEELGDLAGRVRQVRWEELVEVADVLSLHVPLTDDTHHLVDAEVIAKMKDDAVLVN
+TARGPVVDEVALVTALREGRLFGAGLDVYEDEPALAPGLAELENVMLLPHLGSATRDTRA
+AMAELAARNAIAMATGAEVPALVNPGVRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000326.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000326.fa
new file mode 100644
index 0000000000000000000000000000000000000000..874479c500eb5a1c6dcb1803c93b9b4329eb77ff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000326.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00297
+MAERGHGDDRGLDGVGAERGDAGGEIDGFEAAVRGLEDAFARMVRQHRQVVTRQAAALKP
+GLSAGAMKAFITLCNAGTMTPSTLAEHLLLDRAQVSRMVRDLEDEGLITREPDPVDRRSA
+LLTATEEGRARLDAVRGGPAGEGLRADLAHWDRADIHTLVRLLGRLVEEQQARVDRTPDA
+G
+>KBS0714_MOLHKGIG_00094
+MAD------------GAPDPGGGGDDAGFEAAVQGLEQAFSRLVLQHRQVMVRYAAALSP
+ALSVGAMKAFMMLANEGTMTPSAVAEGLLVDRAQVSRMVRDLEAAGLITREPDPRDRRSA
+LLSASPEGLARLDAVRGGPAGRGLRDDLARWDREDIRTLTRLLDRLAAERQTRMQDPAES
+E
+>KD337_NAFOICDF_00242
+MAD---PADHGSDGRGT--GADAFAPEAFDAAVRELEGSFNRLVRQYRATLARQAEAVHP
+GLPLGAMKAFVAICHRGPLTPSDLAEHLMLDRTQISRVLKDLEGDGLIHREPDPRDRRSA
+LLTATDEARARLDAVRQGPAGGGTRARLQRWDLEDVRALSALLRRFVDEREDPAADDACR
+P
+>SA211_MHAAABBN_02107
+MVD------------GAPDPGGGGDDAGFEAAVQGLEQAFSRLVLQHRQVMARYAEALSP
+TLSVGAMKAFMMLANEGTMTPSAVAEGMLVDRAQVSRMVRDLEAAGLITREPDPRDRRSA
+LLSASPEGLARLDAVRGGPAGRGLRDDLARWDREDIRTLTRLLDRLAAERQTRMQDPAES
+E
+>TT9_LFPAFLNI_00089
+MAD------------GAPDPGRGGDDAGFEAAVQGLEQAFSRLVLQHRQVMVRYAAALSP
+ALSVGAMKAFMMLANEGTMTPSAVAEGLLVDRAQVSRMVRDLEAAGLITREPDPRDRRSA
+LLSASPEGLARLDAVRGGPAGRGLRDDLARWDREDIRTLTRLLDRLAAERQTRMQDPAES
+E
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000327.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000327.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4d6d147b0427de1b0588f2410b288b5f05c0dbee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000327.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00298
+MTATAEPRVPAPREDLYRHVNAAWLDTHEIPADQGAYGAFLELRDAAELAVRHLCEDAVREVGAGFDPAQARVDATAAAG
+AEHHTPLEPLDAEETEGMELPEVKRRIAALYASFMDDETVEARGLEPVATDMAAVASVQTPAELLELSGRLQRQGVSGLV
+NTGALNDAGNPDRMLLHLLQGGLGLPDESYYRDEAYAEILEQYTEHAGRLLGLAGIGADSAEAAEAGVRVVELEKRIAAL
+HWDVVRSRDAVARYNLMTHEQLVELFPLAEAWLEGVDAAGERSREVVVWQPDFLSGVQALLEGPEAADLEDWRHWLILQV
+LRSFAGFLPDAFVQENFSFYGRRLAGTEEVRHRWKRAVAFVNGAAGEDVARLYVDRHFPEGHVAAMDELVNLLQEAYRRS
+IDELEWMSEETRQRALEKLSMFRPMVGRPVRWVDYSSLEVHAGDLLGNARAASEFEWERDLRKIEDGPDPEEWHITPQTV
+NAYYSPLENAIVFPAAILQPPFFDPEKSMAANLGAIGAVIGHEIGHGFDDQGSRYDGSGRLEDWWTQEDRAAFTELTSRL
+VAQYNVLSPAEAPDHRVNGEFTLGENIGDLGGLGIAHRALEIWRDEGDGASLDAAAGDREFFSAWAAVWRQLTRPETMVT
+RIASDPHSPNEFRCNQVVKNIDAFHEAFGTQEGDPMWLAPEERVTIW
+>KBS0714_MOLHKGIG_00093
+MTATAEPEVPSPREDLYRHVNAGWLDTHEIPADQGAYGAFLELRDAAELAVRHLCEDAVREVGTGFDPAQARVQATAAAG
+AHRDVPLAPLDEEDAEGTEHPELKRRIAALYASFMDDETVEARGLEPIASDLAAVATVSTPAELLALSGRLQRQGVSGLI
+NTGALNDAGNPDRMLLHLLQGGLGLPDESYYRDEAYAEILEQYTEHTGRLLALAGIGADRDEAAALGVRVVELEKRIAAL
+HWDLVRSRDAVARYNPMTHDRLTELFPLADAWLEGVDAAGERAAEVVVWQPDFLSGVQGLLEGPEAADLEDWRHWLILQV
+LRSFAGFLPDAFVQENFSFYGRRLAGTEEVRPRWKRAVAFVNGAAGEDVAQLYVARHFPQGHVAAMDELVGLLQEAYRRS
+IEELEWMGEETRQRALEKLAMFRPMVGYPSKWLDYSALEVHAGDLLGNARSSSELEWERDLRKIADGPDPEEWHITPQTV
+NAYYSPLENAIVFPAAILQPPFFDPEASMAANLGAIGAVIGHEIGHGFDDQGSRYDGAGRLEDWWTEEDRAAFTERTSRL
+VAQYNALSPAEAPDHRVNGEFTLGENIGDLGGLGIAHRALEIWRDEGDGASLDAAAGDREFFTAWATVWRQLTRPEAMVT
+RIASDPHSPNEFRCNQVVKNLDAFHEAFGTREGDPMWLAPEERVTIW
+>KD337_NAFOICDF_00243
+MTATAEPRVPSPREDLYRHVNAGWLDTHEIPADQGAYGAFLELRDAAELAVRRIAEDAARDA------------AMAAPA
+PEVEAPAQDEASQDPAAAERAA-RERIAVLWSAFMDEEAVEAAGILPLAADLEAVDAVASPAELLALSGRLQREGVSGLI
+GTGALNDAGDPERMLLHLIQSGLGLPDESYYREEAYAEILAQYTEHVGRLFALAGVGGDEAGAAALGERVVALEKRIAAH
+HWDVVRSRDAVARYNLLTRDQLLELLPLAPGWLEGIGAADARADEVVVWQPDFLTGVQALLEGPDAADLADWKAWLTLQV
+LRSRAGFLPDAFVQENFSFYGRRLAGTQEVRPRWKRAVAFVNGGVGEDVGRLYVARHFPEGHVAAMDQLVGLLLEAYRRS
+IDALDWMGEQTRQSALEKLAMFRPMVGFPETWRDYSALELTPGDLVGCARAVDRFEWDRDLAKIETGPDPREWHMTPQTV
+NAYYTPLENAIVFPAALLQPPFFDPERSMAANLGGIGAVIGHEIGHGFDDQGSRYDGSGRLHDWWTEQDREAFAERTGRL
+VAQYSALSPAEAPDRQVNGEFTLGENIGDLGGLGIAHQALEIWREEQDGSTEDESSGDREFFQAWAAVWRQLTRPETMVT
+RIASDPHSPNQFRCNQVVKNLDAFHTAYGTREGDPMWLAPEERVTIW
+>SA211_MHAAABBN_02106
+MTATAEPRVPSPREDLYRHVNTGWLDTHEIPADQGAYGAFLELRDAAELAVRHLCEGAVREVGAGFDPAQARVQATAAAG
+AHRDAPLAPLDAEDTEGMEHPELKRRIAALYASFMDDETVEARGLEPIASDLAAVATVTTPAELLTLSGRLQRQGVSGLI
+NTGALNDAGNPDRMLLHLLQGGLGLPDESYYRDEAYAEILEQYTEHTGRLLTLAGIGADRDEAAALGVRVVELEKRIAAL
+HWDLVRSRDAVARYNPMTHDRLTELFPLADAWLEGVDAAGERAAEVVVWQPDFLSGVQGLLEGPEAADLEDWRHWLILQV
+LRSFAGFLPDAFVQENFSFYGRRLAGTEEVRPRWKRAVAFVNGAAGEDVAQLYVARHFPQGHVAAMDELVGLLQEAYRRS
+IEELEWMGEETRQRALEKLAMFRPMVGYPSKWLDYSALEVHAGDLLGNARSSSELEWERDLRKIADGPDPEEWHMTPQTV
+NAYYSPLENAIVFPAAILQPPFFDPEASMAANLGAIGAVIGHEIGHGFDDQGSRYDGAGRLEDWWTEEDRAAFTERTSRL
+VAQYNALSPVEAPDHRVNGEFTLGENIGDLGGLGIAHRALEIWRDEGDGASLDAAAGDREFFTAWATVWRQLTRPEAMVT
+RIASDPHSPNEFRCNQVVKNIDAFHEAFGTREGDPMWLAPEERVTIW
+>TT9_LFPAFLNI_00088
+MTATAEPEVPSPREDLYRHVNAGWLDTHEIPADQGAYGAFLELRDAAELAVRHLCEDAVREVGTGFDPAQARVQATAAAG
+AHRDVPLAPLDEEDAEGTEHPELKRRIAALYASFMDDETVEARGLEPIASDLAAVATVSTPAELLALSGRLQRQGVSGLI
+NTGALNDAGNPDRMLLHLLQGGLGLPDESYYRDEAYAEILEQYTEHTGRLLALAGIGADRDEAAALGVRVVELEKRIAAL
+HWDLVRSRDAVARYNPMTHDRLTELFPLADAWLEGVDAAGERAAEVVVWQPDFLSGVQGLLEGPEAADLEDWRHWLILQV
+LRSFAGFLPDAFVQENFSFYGRRLAGTEEVRPRWKRAVAFVNGAAGEDVAQLYVARHFPQGHVAAMDELVGLLQEAYRRS
+IEELEWMGEETRQRALEKLAMFRPMVGYPSKWLDYSALEVHAGDLLGNARSSSELEWERDLRKIADGPDPEEWHITPQTV
+NAYYSPLENAIVFPAAILQPPFFDPEASMAANLGAIGAVIGHEIGHGFDDQGSRYDGAGRLEDWWTEEDRAAFTERTSRL
+VAQYNALSPAEAPDHRVNGEFTLGENIGDLGGLGIAHRALEIWRDEGDGASLDAAAGDREFFTAWATVWRQLTRPEAMVT
+RIASDPHSPNEFRCNQVVKNIDAFHEAFGTREGDPMWLAPEERVTIW
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000332.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000332.fa
new file mode 100644
index 0000000000000000000000000000000000000000..22cb29205660465fe1c2a51049e0d0a6376244f8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000332.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00303
+MS----------TPYEPIRDATPHAGAHTPPPTQAEFRAEHESLGEMFKSLSSRLSTLVS
+QEIALAKAEATESAKKAGTGAGLLAGAAVGGFFLLMFLSLALMWALGSAMHLGWAALIVA
+VLWGVCAAVLALMGKKHLEKIKGLPQTQETLQEIPETLNPAKETR
+>KBS0714_MOLHKGIG_00088
+MS----------TAHEPFRDATPHSGAHTPPPTQAEFRAEHESLGEMFQSLSAKLSTLVS
+QEIALAKAEATESAKKAGKGAGLLAGAAVGGFFLLMFLSLALMHLLDVFLPIGWAALIVA
+VLWGVVAAVLAVQGKKDIEKIKGLPQTQETLQEIPETLNPAKETR
+>KD337_NAFOICDF_00248
+MSHATPNGGAPRHADPAAHQSTPAAGAHTPPPTQAEFRAEHESLGEMFSSATEKVSLLMR
+QEIALAKAEATDSAKKAGKGAGMFAGAAVGGFFLLMFLSLALMYALGSLMPLGWAALIVA
+VLWGVVAAVLALQGKKNIEKIKGLPQTQETLQEIPETLNPAKETR
+>SA211_MHAAABBN_02101
+MS----------TAHEPFRDATPHSGAHTPPSTQAEFRAEHESLGEMFQSLSAKLSTLVS
+QEIALAKAEATESAKKAGKGAGLLAGAAVGGFFLLMFLSLALMHLLDVFLPIGWAALIVA
+VLWGVVAAVLAVQGKKDIEKIKGLPQTQETLQEIPETLNPAKETR
+>TT9_LFPAFLNI_00083
+MS----------TAHEPFRDATPHSGAHTPPSTQAEFRAEHESLGEMFQSLSAKLSTLVS
+QEIALAKAEATESAKKAGKGAGLLAGAAVGGFFLLMFLSLALMHLLDVFLPIGWAALIVA
+VLWGVVAAVLAVQGKKDIEKIKGLPQTQETLQEIPETLNPAKETR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000334.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000334.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d2507905dce0f70d8c0ca44c18ffbf00a4462208
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000334.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00305
+MISVRRHAARGLVALAAAVAVSAPLAAPAVAAPAAPTAPAAAQSATGKPVVRPEVVGHRG
+ASGYRPEHTLAAYELAAAQGADVIEPDLVSTKDGVLVVRHENLIDGTTDVAQRPEFADRK
+TTKVVDGVALTGWFTEDFTLAELKTLRAKERLPQVRPESASYNGRYQVPTFEEVLELRER
+LSDRYGRQIGVIPEIKHPTYFDSIGLSMEERVVELLDEHGLNKRNAPATVQSFELANLRD
+LNENLGLKAETVFLSSVTGTPYDSVAAGDTVRDYDFYETAAGMREVRAAGVDTLGPAFAQ
+VITKEKDGSMGEETAFVSLAHRAGLEVVPYTFRAENQFLYTEFRSSADSNAQGDMVGMIQ
+PFLDAGIDGFFTDHPDLGVQAVDTWMQGK-----KEHPGRG---------VGKSA-----
+--------------QRGLQVR
+>KBS0714_MOLHKGIG_00086
+MTSVRRHAARGLVALAAAVAVSAPLAAPAAAAPAAPTTPAAAQSVTGKPVVRPDVVGHRG
+ASGYRPEHTLAAYELAAAQGADVIEPDLVSTKDGVLVVRHENLIDGTTDVAQRPEFADRK
+TTKVVDGVALTGWFTEDFTLAELKTLRAKERLPQVRPESASYDGRYQVPTFEEVLELRER
+LSARYGREIGVIPEIKHPTYFDSIGLSMEERVVELLDEYGLNKRNAPATVQSFELANLRD
+LNENLGLKAETVFLSSVTGAPYDSVAAGDGLRDYDFYETAAGMREVRAAGVDTLGPAFAQ
+IITKEKDGSMGEETAFVSLAHRAGLEVVPYTFRAENQFLYTEFRSSTDPNARGDMVGMIQ
+PFLDAGIDGFFTDHPDLGVQAVDTWMQGK-----KEHPGRG---------VGKTA-----
+--------------QRGLKVR
+>KD337_NAFOICDF_00250
+MTALRT-TARGLAALTAAVAVAAPLAVPASAAIPAKEPITQAE--------RPDVVAHRG
+ASAYRPEHTLAAYELAVAQGADVIEPDLVSTKDGVLVDRHENDITGTTDVSERPEFADRK
+TTKTVDGVEITGWFTEDFTLAELKTLRAKERLPEARPGSAAYDGMYQVPTFEEDLKLREE
+LSAKYGREIGIIPEIKHPSYFDGIGLSQEEEVIELLEEHGLNHADGRAVVQSFEFSNLAE
+MNTRLGLQADTAYLLWYEGSGYDAVLSGDTARDYAYFSTPAGAAEAAFNGIDIYGPELRQ
+VIALNQDGSLGAPTGLVEVAHDAGLTVVPYTFRAENQSLPLQFRSSENPVEHGDLAAYIT
+EVLDAGVDGFFTDFPDVGVAARDAWLAEKPAEQPSEQPSDGSHAVPGKVQTGDAAAWLPA
+GLAAAAAGVLVALRRRLTAAR
+>SA211_MHAAABBN_02099
+MTSVRRHAARGLVALAAAVAVSAPLAAPAVAAPAATETPAAAQSVTGKPVVRPDVVGHRG
+ASGYRPEHTLAAYELAAAQGADVIEPDLVSTKDGVLVVRHENLIDGTTDVAQRPEFADRR
+TTKVVDGVALTGWFTEDFTLAELKTLRAKERLPQVRPESASYDGRYQVPTFEEVLELRER
+LSARHGREIGVIPEIKHPTYFDSIGLSMEERVVELLDEHGLNKRNAPATVQSFELANLRD
+LNENLGLKAETVFLSSVTGAPYDSVAAGDELRDYDFYETAAGMREIRAAGVDTLGPAFAQ
+IITKEKDGSMGEETAFVSLAHRAGLEVVPYTFRAENQFLYTEFRSSTDRNAQGDMVGMIQ
+PFLDAGIDGFFTDHPDLGVQAVDVWMQGK-----KEHPGRG---------VGKTA-----
+--------------QRGLQGR
+>TT9_LFPAFLNI_00081
+MTSVRRHAARGLVALAAAVAVSAPLAAPAVAAPAATETPAAAQSVTGKPVVRPDVVGHRG
+ASGYRPEHTLAAYELAAAQGADVIEPDLVSTKDGVLVVRHENLIDGTTDVAQRPEFADRR
+TTKVVDGVALTGWFTEDFTLAELKTLRAKERLPQVRPESASYDGRYQVPTFEEVLELRER
+LSARHGREIGVIPEIKHPTYFDSIGLSMEERVVELLDEHGLNKRNAPATVQSFELANLRD
+LNENLGLKAETVFLSSVTGAPYDSVAAGDELRDYDFYETAAGMREIRAAGVDTLGPAFAQ
+IITKEKDGSMGEETAFVSLAHRAGLEVVPYTFRAENQFLYTEFRSSTDRNAQGDMVGMIQ
+PFLDAGIDGFFTDHPDLGVQAVDVWMQGK-----KEHPGRG---------VGKTA-----
+--------------QRGLKGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000335.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000335.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b83b791ac05b7c250ccbdff3d96ef73be4c4719d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000335.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00307
+MTEQPEMHPLSEPEQEWVRVRREFAAQEGVDHLDLDAVAAYYDGVLARSVSEAEALDPDE
+LAVLLDVVAVLLGEHLGARHGMQWVTVSDDEGPALALRDTLSDAVVFPQPAVGQAWNEQV
+TGAWLGEYVDWLGEQLQGIRA--GDRPDGVAQQG-
+>KBS0714_MOLHKGIG_00084
+MTDQPEMSPLTEPEREWVRVRRDFAAQEGVDHLDLDAVAAYYDAVLARSQAEADELDPEE
+LAVLLDVVAVLLGEHLGARHGMQWVTVADEEGPALALRDTLSDAVVFPQPVVGQSWNDQA
+TGEWMGGYVDWLGEQLQQIRADAGTLP------GA
+>KD337_NAFOICDF_00251
+MSEQ-QIRPLTAAEQEWVAVRRDFAAQEGTGHLDLDAVDAYHGRLLARSRS--EDVDPDE
+LGVLLDVVAVLLGEHLGARHGLAWVAVTEGDATDLGLRDPLSDAVVFPQSVVAQHWND-G
+DAHWIPGYVDWLGAQLAPLREERRAAE------G-
+>SA211_MHAAABBN_02097
+MTDQPEMSPLTEPEREWVRVRRDFAAQEGVDHLDLDAVAAYYDAVLARSQAEAEELDPEE
+LAVLLDVVAVLLGEHLGARHGMQWVTVADEEGPALALRDTLSDAVVFPQPVVGQSWNHQA
+TGEWMGEYVDWLGEQLQQIRADAGTRP------GA
+>TT9_LFPAFLNI_00079
+MTDQPEMSPLTEPEREWVRVRRDFAAQEGVDHLDLDAVAAYYDAVLARSQAEAEELDPEE
+LAVLLDVVAVLLGEHLGARHGMQWVTVADEEGPALALRDTLSDAVVFPQPVVGQSWNHQA
+TGEWMGEYVDWLGEQLQQIRADAGTRP------GA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000337.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000337.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fbfcfbf68c9d575a20bcd9310658a07c462d9890
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000337.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00312
+MSAAAPVP---AT------------RPADDDGWARVHPASPWVRGWTFLLLILFFLGRNAVEDFAAGRF-GAGAGGGSGE
+GEGSLLVAGGILLGVTLLVSLAFFFSWWFTRFRIGEDQIELRQGWLFRTRRQMKYDRIQAVDLQHPLVARLLGLAVVKVE
+AAD-GGESALELSFLPKARAEQVRREILDRASGVLVGPASAPRIAEGADAAAGVIPGVMPGVMPGAEAGPGVAPPGADAD
+PTTPRADAPEGAAPSSSDPGLARRADDEGELMLRVPSGRLIGSVLLSGGVAGTVAVYLVVVLGTSLFFALAPGTWLEGED
+TPLTGIVVAWGLPLAFAVVGQAWSGLNGGWGFQVRRSADGLRLRHGLTETTHQTVPPGRVQGVTVSQPLFWRPFGWHRVK
+VSVAGYG--EDAAGKRSTALPVGPWEDVLRVLTVVAPDPGLDGDPREAEGLTPARLMHLGLHGSGTEGGFHHIPHRGRWW
+FNWFAWRRRGFTTTRALLVVRSGRWNRVLQTLQHERVQTAALDQGPVQRRLRLATVHVRTAGGRAVLPDLDEAVALELFA
+EEARHAAVSRRLADRDRWMRPEELARFEQRTREVAATEVGREELARAGVA--RPAAPAGGVAGTDPEPRTSHEERP
+>KBS0714_MOLHKGIG_00081
+MSAAAP-------------------PPADDAGWVRVHPASPWVRGWTFLLLILFFAGRNAVEDFAAGRLSGEDAPGG---
+GDGSLLVAGGILLGVTLLISLVFFFSWWFTRFRCGEDRIELRQGWLFRSRRQMRYDRIQAVDLQHPLVARLLGLATVKVE
+AAD-GGESALELSFLRRAEAEAVRREILDRASGMLGGA--------GADASA-----------PERAAEPGLP----DAD
+A----A--------------------DAGELMLQVPAGRLLGSVLLSGGVLGVLAGSLIWLGGLALVVALLPEAVLDEGE
+T-LTGIGAAASLPALFSVAGVAWSRLNAGWGFQVRRSTDGLRLRHGLTETTHQTVPPGRVQGVTVSQPLFWRPFGWYRVN
+MAVAGYL--QESDGARDVALPVGPWEDVLRVLTVVAPDPGLDGDPRAAQGLTPAGLMHLGVHGTGTEGGFQHVPRRGRWW
+FNWFAWRRTGFTTTRSLLVVRSGWLNRRLQTLQHERMQAAELAQGPVQRRLGLATVRVWVAGANAVVRDLDEDVAVDLYA
+REARHAAVSRRLADRDQWMRPEELARFEQRTREVAATEVGRRELARAGVV---GGAVVGEESGAHVPAVRGEEER-
+>KD337_NAFOICDF_00253
+MSAPAPRPEGLASGPSPEDGRIAPAPAADDAGWVRVHPASPWIRGWVMVATFLFFALRDVVERWIGGLF-GADAGGGPGV
+DGRGLLIGGGIALGVLLLVGLAFFFSWWFTRFRIGAEEIELKQGWLFRSRRQMHYDRLQAVDLQHPLPARLIGLAVVKVE
+AADGGGDSALELAYLPKAQAAAVRRQILDRASGAAAAR--------PVPSAA-----------PEAAGGPAAAGPVR---
+-------------------GLLVDPEEQGPVLLRVPAGRLIGSVLLSSTVMGLLGAVVAVPAVLSLLLLLFPDANAGEEA
+G-VWAVTLGSTFPLLFSLAGAVWSGLNKGWGFTVRDSSDGLRLRYGFTETVSQTVPPGRVQGVEISQPLFWRPFGWHRVK
+VSVAGYGGLEAEGRRRDVALPVGPWEDVLRVLQVVAPDPGLGGDARAA-----GELMRTAMTGSGEEGGFRHVPRRAAWW
+WHWLTWRRHGYALTPTLLVVRHGRLSRSVQTVQHERLQAVALTQGPVQRRLRVATLRVHMAGGAARLRGLDEDVLAELFE
+VESRHAAVSRRLTDRNRWMLPEELERFERRTAEVARTEVGRAEMAAAGVVPMETGPRPGDTPPVATTEHRGEETA-
+>SA211_MHAAABBN_02094
+MSAAAP-------------------PPADDAGWVRVHPASPWVRGWTFLLLILFFAGRNAVEDFAAGRLSGEDAPGG---
+GDGSLLVAGGILLGVTLLISLVFFFSWWFTRFRCGEDRIELRQGWLFRSRRQMRYDRIQAVDLQHPLVARLLGLATVKVE
+AAD-GGESALELSFLRRAEAEAVRREILDRASGVLGGA--------GADASA-----------PERAAEPGLA----DAD
+PDAVDA--------------------DAGELLLQVPAGRLLGSVLLSGGVLGVLAGSLIWLGGLALVVALLPEAVLDEGE
+T-LTGIGAAASLPALFSVAGVAWSRLNAGWGFQVRRSTDGLRLRHGLTETTHQTVPPGRVQGVTVSQPLFWRPFGWYRVN
+MAVAGYL--QESDGARDVALPVGPWEDVLRVLTVVAPDPGLDGDPRAAQGLTPAGLMHLGVHGTGTEGGFQHVPRRGRWW
+FNWFAWRRTGFTTTRSLLVVRSGWLNRRLQTLQHERMQAAELAQGPVQRRLGLATVRVWVAGANAVVRDLDEDVAVDLYA
+REARHAAVSRRLADRDQWMRPEELARFEQRTREVAATEVGRRELARAGVV---GGAVVGEESGAHVPAVRGEEER-
+>TT9_LFPAFLNI_00075
+MSAAAP-------------------PPADDAGWVRVHPASPWVRGWTFLLLILFFAGRNAVEDFAAGRLSGEDAPGG---
+GDGSLLVAGGILLGVTLLISLVFFFSWWFTRFRCGEDRIELRQGWLFRSRRQMRYDRIQAVDLQHPLVARLLGLATVKVE
+AAD-GGESALELSFLRRAEAEAVRREILDRASGMLGGA--------GADASA-----------PERAAEPGLP----DAD
+A----A--------------------DAGELMLQVPAGRLLGSVLLSGGVLGVLAGSLIWLGGLALVVALLPEAVLDEGE
+T-LTGIGAAAALPALFSVAGVAWSRLNAGWGFQVRRSTDGLRLRHGLTETTHQTVPPGRVQGVTVSQPLFWRPFGWYRVN
+MAVAGYL--QESDGARDVALPVGPWEDVLRVLTVVAPDPGLDGDPRAAQGLTPAGLMHLGVHGTGTEGGFQHVPRRGRWW
+FNWFAWRRTGFTTTRSLLVVRSGWLNRRLQTLQHERMQAAELAQGPVQRRLGLATVRVWVAGANAVVRDLDEDVAVDLYA
+REARHAAVSRRLADRDQWMRPEELARFEQRTREVAATEVGRRELARAGVV---GGAVVGEESGAHVPAVRGEEER-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000338.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000338.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9cca5c724a59996ba30430728ac659f29702e1e3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000338.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00313
+MPGIDLTGVTFAPASPKLTPVKLISSSIGHLIWLVVFSVPLVLKLLGPWEGLWAWTAWGL
+PAIVVVSWLVDLVLIPRRVRAMGWAEREDDVLWREGLLFRSVHAVPYGRLQYVDVSDGPL
+LRRVGLQTLTLKTAASGSDVTLEGLPRETADELREVLMARGQARLAGL
+>KBS0714_MOLHKGIG_00080
+MPGIDLSGVAFTPASPRLTTVKLIATTIGHLIWLAAFSVPLILKLTGPWAGMAAWVAWGL
+PAVVVVSWIVDLILIPRRVRAMGWAEREDDVLWREGILFRSVHAVPYGRLQYVDVSDGPL
+LRRVGLQTLTLKTAAAGGDVTLEGVPRERAEELREVLMARGQARLAGL
+>KD337_NAFOICDF_00254
+MPGIDLQGVEFTPVSPALVRVEAVRELIALVIWLAVVSVPLVLKLTGVWPDMWSWTAWGL
+PALVLAWSLVELVLIPRRVVAKGWAEREDDVLWREGILFRRVVAVPYGRLQYVDVTDGPL
+LRWAGLQKLTLKT-AGGADVELVGLPRETCDRLREVLMARGQARLAGL
+>SA211_MHAAABBN_02093
+MPGIDLSGVAFTPASPRLATVKLIATTIGHLIWLAAFSVPLILKLTGPWAGMAAWVAWGL
+PAVVVVSWIVDLILIPRRVRAMGWAEREDDVLWREGILFRSVHAVPYGRLQYVDVSDGPL
+LRRVGLQTLTLKTAAAGGDVTLEGVPRERAEELREVLMARGQARLAGL
+>TT9_LFPAFLNI_00074
+MPGIDLSGVAFTPASPRLATVKLIATTIGHLIWLAAFSVPLILKLTGPWAGMAAWVAWGL
+PAVVVVSWIVDLILIPRRVRAMGWAEREDDVLWREGILFRSVHAVPYGRLQYVDVSDGPL
+LRRVGLQTLTLKTAAAGGDVTLEGVPRERAEELREVLMARGQARLAGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000339.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000339.fa
new file mode 100644
index 0000000000000000000000000000000000000000..64e1bf59e036dd01370df9c9f3f631b6797be752
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000339.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00314
+MIALRSWWTVVAVAVAVLLGWLAGLAAPSLGWGAPVVGRSGLITVTAVSVLCLVLGWRVR
+RDREKPPAARMDPIAAARTLVLGQAAGFAGAALAGWHAGVALQVAARAGAGAPTVREAAL
+QAAGGLVLLAVGLVVERWCRIPPEGDAAEGGRGEDGTAGRGRAP-RPETEGGYARARD
+>KBS0714_MOLHKGIG_00079
+MIALRSGWTLLVVLAAAVLGWLAGLAAPSLGWPAPVVGRGGLITVAAVSVLCIGLGWRVR
+RDREKPAAARMDPLAAARTLVLGQASGFAGAALGGWHAGVAVQVLLRAGVGAPTVREAAL
+QAAGGLVLLVVGLIVERWCRIPPEEDAPEGGRGQDGSPGRGRPV-RPETEGGYARARH
+>KD337_NAFOICDF_00255
+MISLVSGRTALLAFAAAVLGWLAALTAPSLGLAAPVMHLAALVTVVAVGVLCLVLGWRVR
+RDRDRPLAQRMDPLAAARTLVLGQASGLTGAGLAGWHAGVGLEVASRAGIEAPAVLTAGL
+LALGGAALLTVGVVVERWCRIPPEGDGAEPGAGQDGGGSGGHGARRPEAEGGFARARD
+>SA211_MHAAABBN_02092
+MIALRSGWTLLVVLVAAVLGWLAGLAAPSLGWPAPVVGRGGLITVAAVSVLCLALGWRVR
+RDREKPAAARMDPLAAARTLVLGQASGFAGAALGGWHAGVAVQVLLRAGVEAPTVREAAL
+QAVGGLVLLVVGLIVERWCRIPPEEDAPEGGRGQDGSP--GRPA-RPETEGGYARARH
+>TT9_LFPAFLNI_00073
+MIALRSGWTLLVVLVAAVLGWLAGLAAPSLGWPAPVVGRGGLITVAAVSVLCLALGWRVR
+RDREKPAAARMDPLAAARTLVLGQASGFAGAALGGWHAGVAVQVLLRAGVEAPTVREAAL
+QAVGGLVLLVVGLIVERWCRIPPEEDAPEGGRGQDGSP--GRPA-RPETEGGYARARH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000342.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000342.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fb63faff798ae0a01b4671b1ac29b5337b88f249
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000342.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00318
+MTEQTHHDDAARGPV----PAADGSAAAPTASTPAA-----AGVPGTFDPDSTAIDRPRI
+EAAVREILLAIGEDPDREGLQDTPKRVAKAYAEFFAGLHQGPEQVLGTTFDIAHEELVLV
+KDIPFYSTCEHHLVPVHGTAHIGYIPSAAGRVTGLSKLARLVELYARRPQVQERLTTQVV
+EALMEHLAPRGAIVVVEAEHMCMSMRGVRKPGAKTVTSAVRGQLRDPSTRSEAMSLIMHG
+>KBS0714_MOLHKGIG_00075
+M----------------------------TAHTPDD------AVPGTFDPDSTAVDRPRI
+EAAVREILLAIGEDPDREGLADTPARVAKAYAEFFAGLHQSPDQVLGTTFDIAHEELVLV
+KDIPFYSTCEHHLVPFHGTAHIGYIPSAEGRVTGLSKLARLVELYARRPQVQERLTTQVV
+EALMEHLAPRGAIVVVEAEHMCMSMRGVRKPGAKTVTSAVRGQLRDPSTRSEAMSLIMHG
+>KD337_NAFOICDF_00259
+MTEQ--HRDAALADAHLHRPHEAAADVAPTTGAGAALAGAVPGVPGTFDPDQDTVDRPRI
+EAAVREILLAIGEDPDREGLQDTPKRVAKAYAEFFAGLHQRPEQVLGTTFDLSHEELVLV
+KDIPFYSTCEHHLVPFHGAAHIGYIPSAEGRVTGLSKLARLVELYARRPQVQERLTTQVV
+EALMEHLQPKGAIVVVEAEHMCMSMRGVRKPGAKTVTSAVRGQLRDPSTRAEAMSLIMHG
+>SA211_MHAAABBN_02088
+M----------------------------TAHTPDD------AVPGTFDPDSTAVDRPRI
+EAAVREILLAIGEDPDREGLADTPARVAKAYAEFFAGLHQSPDQVLGTTFDIAHEELVLV
+KDIPFYSTCEHHLVPFHGTAHIGYIPSAEGRVTGLSKLARLVELYARRPQVQERLTTQVV
+EALMEHLAPRGAIVVVEAEHMCMSMRGVRKPGAKTVTSAVRGQLRDPSTRSEAMSLIMHG
+>TT9_LFPAFLNI_00069
+M----------------------------TAHTPDD------AVPGTFDPDSTAVDRPRI
+EAAVREILLAIGEDPDREGLADTPARVAKAYAEFFAGLHQSPDQVLGTTFDIAHEELVLV
+KDIPFYSTCEHHLVPFHGAAHIGYIPSAEGRVTGLSKLARLVELYARRPQVQERLTTQVV
+EALMEHLAPRGAIVVVEAEHMCMSMRGVRKPGAKTVTSAVRGQLRDPSTRSEAMSLIMHG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000343.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000343.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f88e0c298e74ca90a619f2952a2fd08f71aa0123
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000343.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00319
+MKKLFNKPYIWILLGLLVLAVAIPLATSQTGRTMVDTNVGMAMLQDDKAAQARVVDGDQRVDLTLREPYSQDGRDLGKEV
+YFHFATARASDVVTAVDDSALDGYTDEPVRSNWLLSLLGFMIPFLLIALLFWFLLSRMQGGGGKVMQFGKSRAKLINKDN
+PDVLFKDVAGADEAVEELQEIKEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFV
+GVGASRVRDLFEQAKSNAPAIIFVDEIDAVGRHRGAGIGGGNDEREQTLNQMLVEMDGFDASTNVIMIAATNRPDVLDPA
+LLRPGRFDRQIPVEAPDLEGRAKILEVHAQGKPIALDVDLRSLAKRTPGYTGADLANVINEAALLTARSNNNVIDNHALD
+EAVDRVMAGPQKRTRLMNEHERKVTAYHEGGHALVAAGLRNSAPVTKITILPRGRALGYTMVVPEDDKYSVTRNELLDQL
+AYALGGRVAEEIVFKDPSTGAANDIQKATDTARKMVTEYGMSAKVGAVKLGGGNSEPFVGGGGGGSSREYSEELAYLVDA
+EVRGLLDGAHAEAHWVLTENRDVLDRLAYELLEKETLTQEAIAEIFRDVRKRPERDVWLASDERLPQDIPPVLSPSERRS
+RHEGGEQTPVGVEGTTVPVHPEGAPPSSLGGDAPTPGLPPHGGPSSSPG---AGEGPTY
+>KBS0714_MOLHKGIG_00074
+MKKLFNKPYVWILLGLLVLAVAIPLTTSQSGRTMVDTNVGMALLKDDKAAQARVVDGDQRVDLTLREPYKQDDRDLGKEV
+YFYFATARATDVVTAVDDSALDGYTDEPVRSNWFLSLLGFMVPFLLIALLFWFLMSRMQGGGGKVMQFGKSRAKLINKDN
+PDVLFKDVAGADEAVEELQEIKEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFV
+GVGASRVRDLFEQAKSNAPAIIFVDEIDAVGRHRGAGIGGGNDEREQTLNQMLVEMDGFDASTNVIMIAATNRPDVLDPA
+LLRPGRFDRQIPVDAPDLEGRAKILEVHAQGKPIALDVDLRSLAKRTPGYTGADLANVINEAALLTARSNNNVIDNHALD
+EAVDRVMAGPQKRTRLMNEHERKVTAYHEGGHALVAAGLRNSAPVTKITILPRGRALGYTMVVPEDDKYSVTRNELLDQL
+AYAMGGRVAEEIVFKDPSTGAANDIQKATDTARKMVTEYGMSAKVGAVKLGGGSSEPFVGGAAGGSSREYSEELAYLVDA
+EVRTLLDQAHAEAHWVLTENRDVLDRLAYELLEKETLTQEAIAAIFADVRKRPERGVWLASDDRLPQDIPPVLSPSERRS
+RHDGGEQTPVGVEGTTVPVRPEGAPPSSLGGDAAGPGLPPHGGPSNTPG---PGEGPTF
+>KD337_NAFOICDF_00260
+MKKQFNKPYIWILLGLLVLGLVIPLTTAQSGRGMVDTNVGMALLRDDKVAQARVVDGEQRVDLTLREPLSQDGRDLGRDV
+YFQFSAARAQDVVRTVQDSSVDGYQDEPVRDSWLLSLLGLMIPFLLISLLFWFLMSRMQGGGGKVMQFGKSRAKLINKDN
+PDVLFKDVAGADEAVEELHEIKEFLTEPERFHAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFV
+GVGASRVRDLFEQAKANAPAIIFVDEIDAVGRSRGVGIGGGNDEREQTLNQMLVEMDGFDASTNVIMIAATNRPDVLDPA
+LLRPGRFDRQIPVEAPDLDGRAKILEVHAQGKPIALDVDLRSLAKRTPGYTGADLANVINEAALLTARSRNNVIDNAALD
+EAVDRVMAGPQKRTRLMNEHERKVTAYHEGGHALVAAGLRNSAPVTKITILPRGRALGYTMVVPENDKYSVTRNELLDQL
+AYAMGGRVAEEVVFKDPSSGAANDIQKATETARKMVTDYGMSSKVGAVKLGSANTDPFLGG-GGAASREYSEELAYLVDA
+EVRALLDGAHAEAHWVLTENRDVLDRLAAELLEKETLTQEQIAEIFKDVRKRPERPLWLAADDRPPHDVPPVLTARERAS
+RLEGEQPEAVGVEGTTVPDAPEGAPPTALGGAGGSA-----GGPGDLPGQHSPTPGPTY
+>SA211_MHAAABBN_02087
+MKKLFNKPYVWILLGLLVLAVAIPLTTSQSGRTMVDTNVGMALLKDDKAAQARVVDGDQRVDLTLREPYKQDDRDLGKEV
+YFYFATARATDVVTAVDDSALDGYTDEPVRSNWFLSLLGFMVPFLLIALLFWFLMSRMQGGGGKVMQFGKSRAKLINKDN
+PDVLFKDVAGADEAVEELQEIKEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFV
+GVGASRVRDLFEQAKSNAPAIIFVDEIDAVGRHRGAGIGGGNDEREQTLNQMLVEMDGFDASTNVIMIAATNRPDVLDPA
+LLRPGRFDRQIPVDAPDLEGRAKILEVHAQGKPIALDVDLRSLAKRTPGYTGADLANVINEAALLTARSNNNVIDNHALD
+EAVDRVMAGPQKRTRLMNEHERKVTAYHEGGHALVAAGLRNSAPVTKITILPRGRALGYTMVVPEDDKYSVTRNELLDQL
+AYAMGGRVAEEIVFKDPSTGAANDIQKATDTARKMVTEYGMSAKVGAVKLGGGSSEPFVGGAAGGSSREYSEELAYLVDA
+EVRTLLDQAHAEAHWVLTENRDVLDRLAYELLEKETLTQEAIAAIFADVRKRPERGVWLASDDRLPQDIPPVLSPSERRS
+RHDGGQQTPVGVEGTTVPVRPEGAPPSSLGGDAAGPGLPPHGGPSNTPG---PGEGPTF
+>TT9_LFPAFLNI_00068
+MKKLFNKPYVWILLGLLVLAVAIPLTTSQSGRTMVDTNVGMALLKDDKAAQARVVDGDQRVDLTLREPYKQDDRDLGKEV
+YFYFASARATDVVTAVDDSALDGYTDEPVRSNWFLSLLGFMVPFLLIALLFWFLMSRMQGGGGKVMQFGKSRAKLINKDN
+PDVLFKDVAGADEAVEELQEIKEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFV
+GVGASRVRDLFEQAKSNAPAIIFVDEIDAVGRHRGAGIGGGNDEREQTLNQMLVEMDGFDASTNVIMIAATNRPDVLDPA
+LLRPGRFDRQIPVDAPDLEGRARILEVHAQGKPIALDVDLRSLAKRTPGYTGADLANVINEAALLTARSNNNVIDNHALD
+EAVDRVMAGPQKRTRLMNEHERKVTAYHEGGHALVAAGLRNSAPVTKITILPRGRALGYTMVVPEDDKYSVTRNELLDQL
+AYAMGGRVAEEIVFKDPSTGAANDIQKATDTARKMVTEYGMSAKVGAVKLGGGSSEPFVGGAPGGSSREYSEELAYLVDA
+EVRTLLDQAHAEAHWVLTENRDVLDRLAYELLEKETLTQEAIAAIFADVRKRPERGVWLASDDRLPQDIPPVLSPSERRS
+RHDGGEQTPVGVEGTTVPVRPEGAPPSSLGGDAAGPGLPPHGGPSNTPG---PGEGPTF
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000345.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000345.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0beaa9ea341138167bfc37c2101b73ffca3ef76d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000345.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00321
+M-----------P-SGSAAPPAL-ESWPPRGRWPEPLHRAVAALRPVLAAH--------D
+GGA------LIGLSGGADSCALAVAAAALRGTRAGAALGPVGAVVVDHGLQAGSADVAEA
+AARVARTLGLEPVLVRRVAVREAGDGPEAAARRARRGAFADAAREAGAG---------LV
+LTAHTADDQAEQVLLGLARGSGTRSLAGIPAGGALPGGTALARPLLGLTRADAEAICRWA
+GVRWWEDPHNADPALLRSRVRTRVLPALEDLADGLGPGVREGLVRTAAIAAEDAAALEQW
+AACALAECRVRGEAGPGPGAEPGDDPGAGTGRSEAPGRG-DVVVRLDLAAFAALPPAVRH
+RVLGLAVVEAGGPRPTRERTLAVDALAVPADPGAGGPRGPWSCPAGW-------------
+---------------------K
+>KBS0714_MOLHKGIG_00071
+MPRPEARDPGPTPAGGVGGLPAV-GAWPPRTRWPEPLHRAVAAVREALAGDGPRRADVVP
+GRAGSRPRGLVALSGGADSLALAVACAVLVGTREGARLGPIGAAVVDHGLQSGSDAVAAA
+AADVARILGLTPVTVTRVEVARTGDGPEADARRARRVALAAAAREAGQGGAAPGAGTAVV
+LTAHTADDQAEQVLLGLARGSGTRSLAGIPARGTLPGGAAVARPLLGLTRADTETICRWA
+GLTWFEDPHNRDPALLRSRVRTRVLPALEDPDAGLGPGVRAGLVRTAAIAAEDAAALEAW
+AGDEFTRLRV--------------DP---------PGRD-PRVVSLDLDTLAALPAAVRH
+RVIARAARAAGGQAPPRERILAVDTLVTGARAG-GTSAGPVELPGGVAAHR---------
+--------ACARLDLIPCLPGP
+>KD337_NAFOICDF_00263
+MSSPFVRDVVAVP--GAPTLPALAGPWPPRSRWPEPLHRAVESVRAVRAEH--------P
+GPV------LVALSGGADSLALAVACAVLAGTRAGERLGPAGAVVVDHGLQDGSAAVAAA
+AARTARALGLAPVTVEAVTVTPAGDGPEASARSARRTALARAAEGVGEGTP------ALV
+LTAHTADDQAEQVLLGLARGSGTRSLAGIPAHGALPGGVALARPLLGLSRADTEAICRWA
+GLTWFTDPHNADPALLRSRVRTRILPALEDPDTGLGPGLRAALVRTAAIAAEDAAALDAW
+ADDALARLRL--------------PA---------PETDRPAPVLLDLDALAALPAAVRH
+RVHARAARAAGAGTPSRERILAADALVAAAHAG-GGSAGPVELGHGVTVRRVAAGEGGVG
+GRKEGGPSGCARLAYIPRPADR
+>SA211_MHAAABBN_02084
+MPRPEARDPGPTPAGGAGGLPAV-GAWPPRTRWPEPLHRAVAAVREALAGDGSCRADAGP
+GRAGNRPRGLVALSGGADSLALAVACAVLVGTRDGARLGPIGAAVVDHGLQSGSDAVAAA
+AADVARILGLTPVTVTRVEVARTGDGPEADARRARREALAAAARDAGQGRA------AVV
+LTAHTADDQAEQVLLGLARGSGTRSLAGIPARGTLPGGAAVARPLLGLTRADTETICRWA
+GLTWFEDPHNRDPALLRSRVRTRVLPALEDPDAGLGPGVRAGLVRTAAIAAEDAAALEAW
+AGAEVTRLRV--------------DP---------PARD-PRVVSLDLDALAALPAAVRH
+RVIARAARAAGGQAPPRERILAVDALVTGARAG-CTSAGPVELPGGVAAHR---------
+--------ACARLDLIPCLPGP
+>TT9_LFPAFLNI_00065
+MPRPEARDPGPTPAGGVGGLPAV-GAWPPRTRWPEPLHRAVAAVREALAGDGPRRADVVP
+GRAGSRPRGLVALSGGADSLALAVACAVLVGTREGRRFGPIGAAVVDHGLQSGSDAVAAA
+AADVARILGLAPVTVTRVEVARTGDGPEADARRARRKALAAAAREAGQGDAVPGAGAAVV
+LTAHTADDQAEQVLLGLARGSGTRSLAGIPARGTLPGGAAVVRPLLGLTRADTETICRWA
+GLTWFEDPHNRDPALLRSRVRTRVLPALEDPDVGLGPGVRAGLVRTAAIAAEDAAALDAW
+AGDEVARLRV--------------DP---------PARD-PRVVSLDLDALAALPAAVRH
+RVIARAARAAGGQAPPRERILAADALVTGARAG-GTSAGPVELPGGVAAHR---------
+--------ACARLDLIPCLPGP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000346.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000346.fa
new file mode 100644
index 0000000000000000000000000000000000000000..09728650a6862c8e12a64ec5c0142e94687aa6d0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000346.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00322
+MDT-------------------APADRVPQPVDWAFAARTAAALAPAGPRFTAREAAREA
+AGLRAAAEASVPHVHRLTGLAAAEDLRDSQVLVVDRPTWSASATQSFATMLEPTFAHLQA
+TRPQEYQAALTPVARHATALEMGGILAWLSGKVLGQYDPF----------AGPSGGRLLL
+NAPSVAQVRTEINVDPEDFRLWVCLHEQTHRVQFAAAPWLRGHLQEQITALASGLFDKAE
+SLPERLRSALAAANPLGRGSGAGAASTGPASGPDDGRPGPAQAGGDVVPARGA-GLLGAL
+QDEEDRARLSHVTAVMSLLEGHANVVMDGVDADVVSSVKTIRRRFEDRADRRSPLDRMLR
+RLLGMDAKMAQYRDGQRFVSAAVAELGMDGFNVVWDAPELLPTEDELHRPERWTARVRAQ
+A
+>KBS0714_MOLHKGIG_00070
+MSDDHATDRPRTAADAEPGAPAEPGPAVAHPVDWAFAARTARSLAAAGPRFTPREATREA
+EGLRAAAEAAVPHVHRLTGLEAARDLRDSQVLVVDRPTWSRAATQSFATLLDPTFAHLRD
+TRPREH-AATTRVTRHATALEMGGILAWMSGKILGQYDPFIALPGPGGTAAGPAGGRLLL
+VAPNVAQVRAEINVDPADFRLWVCLHEQTHRVQFAAAPWLREHLRGEITALTVGLFDKAE
+SLPERLRTALAAANPLGREADAG--RTGTRDGHD---------AQDAVAARPAPGLLGAI
+QDEEDRERLSRLTAVMSLLEGHANVVMDGVDSSVVSSVKTIRRRFDERGDRRSPLDRMLR
+RLLGMDAKMAQYRDGQRFVAAAVAELGMAGFNVVWDAPELLPSEAELHAPETWVARIRAQ
+A
+>KD337_NAFOICDF_00264
+MTAD------------------QPVPSPAHPVDWDAAARAAGSLAAAGPRIGTREARREA
+EGLRAAAAASVAHVHRLTGLAAAEDLRDSQVLVVDRPTWSLANTQSFAGLLEPSFAHLRA
+TRPQEYALTTAPLTRRAAALEMGGILAWLSSKVLGQYDPFSALPGPDGVPAGPAGGRLLL
+VAPNVAQVRREIHVDPADFRLWVCLHEQTHRVQFAAAPWLRGHLQGEITALTGGLFDKAE
+SLPERLRSALAAANPLGASTSPGAGR----AGQDDGAAGP--------GGRPALGLLGAI
+QDEEDRARLSRLTAVMSLLEGHANVVMDAVDSSVVSSVKTIRRRFDARGDRRSGLDRLLR
+RLLGMDAKMAQYRDGQRFVDAAVAELGRDGFNVVWDAPELLPSEEEIHAPDRWVARIRAQ
+A
+>SA211_MHAAABBN_02083
+MSDDHATDRPRAAADAEPGAPAEPGPAVAHPVDWAFAARTARSLAAAGPRFTPREATREA
+EGLRAAAEAAVPHVHRLTGLEAARDLRDSQVLVVDRPTWSRAATQSFATLLDPTFAHLRD
+TRPREHAAATTRVTRHATALEMGGILAWMSGRILGQYDPFIALPGPGGTAGGPAGGRLLL
+VAPNVAQVRAEINVDPADFRLWVCLHEQTHRVQFAAAPWLREHLRAEITALTVGLFDKAE
+SLPERLRTALAAANPLGREADAG--RTGARDGHD---------AQDAAPARPTPGLLGAI
+QDEEDRERLSRLTAVMSLLEGHANVVMDGVDSSVVSSVKTIRRRFDERGDRRSPLDRMLR
+RVLGMDAKMAQYRDGQRFVAAAVAQLGMAGFNVVWDAPELLPSEAELHAPETWVARIRAQ
+A
+>TT9_LFPAFLNI_00064
+MSDDHATDRPRTAADAEPGAPAEPGPAVAHPVDWAFAARTARSLAAAGPRFTPREATREA
+EGLRAAAEAAVPHVHRLTGLEAARDLRDSQVLVVDRPTWSRAATQSFATLLDPTFAHLRD
+TRPREHAAATTRVTRHATALEMGGILAWMSGRILGQYDPFIALPGPGGTAAGPAGGRLLL
+VAPNVAQVRAEINVEPADFRLWVCLHEQTHRVQFAAAPWLREHLRAEITALTVGLFDKAE
+SLPERLRTALAAANPLGREADAG--RIGTRDGHD---------AQDAAAARPAPGLLGAI
+QDEEDRERLSRLTAVMSLLEGHANVVMDGVDSSVVSSVKTIRRRFDERGDRRSPLDRMLR
+RLLGMDAKMAQYRDGQRFVAAAVAELGMAGFNVVWDAPELLPSEAELHAPETWGARIRAQ
+A
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000348.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000348.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d8087aee53857c7f4cdf8ea69904b698939d4db2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000348.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00327
+MLVLTINQRDTLDAGDRVDAFLRSLGD----APGLAGAVALPFQRAVGDELIGAVTDPAA
+AVEVALRALRERRWNVGIGVGALRGADGTEGAPSSGSLDDAAGPALAHARRAVEAAAVST
+ARIPLAVRGADAQASAEAEAVLRLVGQLVWSRTDAEWAVLDLLVPGVRGQQKPAADALGI
+TAQAVSQAVQRAYWNEEHACRPAASRLLALAEEG
+>KBS0714_MOLHKGIG_00067
+MFVLTINQRDTLDAGDRVDTFLRALQD----VPGLDDAVVLPFQRAVGDELIGAVEDPRV
+AVDVALRALRQRRWNVGVGVGTVTHADGAAGAPASGDLHDAGGPGLAAARRAVEAAAVST
+ARIPLAVRGRDEEAAAEAEAVLRLVGQLVWSRTDAEWAVLDLLVPGVRGQQKPAAAALGI
+TAQAVSQAVQRSYWNEEHACRPAAARLLTLA-GG
+>KD337_NAFOICDF_00267
+MFVLTLNQRDTPDAGDRVDALLRELTDAAAAVPGLRSP-ALPFQRSVGDELVGVLEDPHA
+AVDVALRALRQRRWNVGIGVGTVCHADGSAGIPASGDLHHAGGPGLAAARRAVEAAALST
+ARIPLAVRGRDAEAAAEAEAVLKLIGQLVWTRTAAEWSVLDLLVPGVRGQQKPAAQALGI
+TTQAVSQAVQRSFWNEEHACRPAAARLLALA-AG
+>SA211_MHAAABBN_02080
+MFVLTINQRDTLDAGDRVDTFLRALQD----VPGLDDAVVLPFQRAVGDELIGAVEDPRV
+AVDVALRALRQRRWNVGVGVGTVTHADGAAGAPASGDLHDAGGPGLAAARRAVEAAAVST
+ARIPLAVRGRDEEAAAEAEAVLRLVGQLVWSRTDAEWAVLDLLVPGVRGQQKPAAAALGI
+TAQAVSQAVQRSYWNEEHACRPAAARLLTLA-GG
+>TT9_LFPAFLNI_00061
+MFVLTINQRDTLDAGDRVDTFLRALQD----VPGLGDAVVLPFQRAVGDELIGAVEDPRV
+AVDVALRALRQRRWNVGVGVGTVTHADGAAGAPASGDLHDAGGPGLAAARRAVEAAAVST
+ARIPLAVRGRDEEAAAEAEAVLRLVGQLVWSRTDAEWAVLDLLVPGVRGQQKPAAAALGI
+TAQAVSQAVQRSYWNEEHACRPAAARLLTLA-GG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000351.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000351.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2d98b5eb78c34b6f62c261b9d1087b7ab6cb6730
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000351.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00333
+MTRDDAAPLG----RCTFLGPAGTFTEAALRAVPGAEQAELIPATSVPAALAAVRAGEAD
+HAMVPIENSVEGGVSATLDDIASGDDLQILREELVQISFVLVGRPGVELADVRRVSTHTH
+AWAQVRGWVEANLPGVEYTPSGSTAAAARAL---ADAEPGSEPFDAAVCAPLVAEQTGLP
+VLARAIEDVTGAVTRFVLVGRPGPLPAHTGSDKTTLTVPLPDDHPGALREILDQFATRGI
+NLSRIESRPTGEGMGKYFFSIDLEGHLAEERVAAAMGALHRIFPGVRFLGSYPRAEHRPV
+AVRRHTSDDAYRAGRAWVDGLLAR
+>KBS0714_MOLHKGIG_00062
+MTGTDSADATPSRLRYAFLGPAGTFTEAALRKVADPAEAEFVPAGSVLSAVAALRRGEVD
+RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVAISFVLVGRPGVAIEDVRRVTTHPH
+AWAQVRGWAETALPGVEFTPAPSTAAGAGLV---AQGD-----FDAAVCAPLVAEQTGLP
+VLAERIEDVPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGV
+NLSRIESRPTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPT
+RVPAEFTDAAYRSGRAWVESLRSR
+>KD337_NAFOICDF_00274
+M-----SPAP----RYAFLGPAGTFTEAALRQVASPEDVDLLPASSVLAALAAVRVGEAE
+RAVVPIENSVEGGVTATLDDIGADEPLQILAEVLVPISFVLVGRPGVALEDVRRVTTHTH
+AWAQVRGWMEAHLPGVEFTPAGSTAAGARALLPSAGGDGAVASFDAAVCAPLVAEQTGLP
+VLAEAIEDVTGAVTRFVLVSRPGPVPEPTGADKTTLTVPLPDDHPGALREILDQFATRGI
+NLSRIESRPTGEGMGRYFFSIDLEGHVAEERVGAALAALHRTFPGVRFLGSYPRAEGRPP
+TVPEHVTDAAYRRGTAWVRGLRSR
+>SA211_MHAAABBN_02075
+MTGTGSADATPSRLRYAFLGPAGTFTEAALRKVADPAEAEFVSAGSVLSAVAALRRGEVD
+RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVPISFVLVGRPGVAMEDVRRVTTHPH
+AWAQVRGWAETALPGVDFTPAPSTAAGAGLV---AQGD-----FDAAVCAPLVAEQTGLP
+VLAERIEDVPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGV
+NLSRIESRPTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPT
+RVPAEFTDAAYRSGRAWVESLRSR
+>TT9_LFPAFLNI_00057
+MTGTDSADATPSRLRYAFLGPAGTFTEAALRKVADPAKAEFVSAGSVLSAVAALRRGEVD
+RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVPISFVLVGRPGVAIEDVRRVTTHPH
+AWAQVRGWAETALPGVEFTPAPSTAAGAGLV---AQGD-----FDAAVCAPLVAEQTGLP
+VLAERIEDVPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGV
+NLSRIESRPTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPT
+RVPAEFTDAAYRSGRAWVESLRSR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000352.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000352.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7fd11cd205249164ddfb91a8cb0517849686226d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000352.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00334
+MSAFETVDVNEIPADAAILDVREDDEWALGRAAGAQHLPLGQLPDRLEELDPDTDYYVIC
+RTGGRSARAAEFMVGRGYTAINVAGGSGAWLEAGKPMEADGGAEPTVK
+>KBS0714_MOLHKGIG_00061
+MSAFETVDVNEIPADAAILDVREDDEWALGRAAGAQHIPLGQLPDRLEELDPDTDYYLIC
+RTGGRSARAAEFMTGRGYSAINVAGGSGAWLEAGKPMEADGDAEPTVK
+>KD337_NAFOICDF_00275
+MSHFETVTVDQIPADAAILDVREDDEWALGRAAGAQHLPLGQLPERIEELDPDTDYYVIC
+RTGGRSARAAEYMVGRGYSAINVAGGSGAWLEAGKPMEADGDAEPTVK
+>SA211_MHAAABBN_02074
+MSAFETVDVNEIPADATILDVREDDEWALGRAAGAQHIPLGQLPDRLEELDPDTDYYLIC
+RTGGRSARAAEFMTGRGYSAINVAGGSGAWLEAGKPMEADGDAEPTVK
+>TT9_LFPAFLNI_00056
+MSAFETVDVNEIPADAAILDVREDDEWALGRAAGAQHIPLGQLPDRLEELDPDTDYYLIC
+RTGGRSARAAEFMTGRGYSAINVAGGSGAWLEAGKPMEADGDAEPTVK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000355.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000355.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3ea8aad0a66ed5942bf13aa23b7155b71c70c70f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000355.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00338
+MAQPEPVRLAPPGRT-AEPDAARPAERALLAAASACDG-DVAPMLALLGAGRAPDTEASA
+PDAAAPLELPLTGEGRTRQQWELLASVAAQDLSAARVLEPHLDALSILSQASVPAPAGLL
+GVYASESGGRTPRLTPAPHDDDAGSASDGRPDAGPD-AWLLDGEKPWCSLADECAAAVIT
+GREADGTRRAVLVDLDHPGVAETSSAWPALGLAPIRTVGLGFDAVPGTAVGGPEWYLRRP
+GFAWGGIGVAAVWFGGAVGIARTLRDATRSRAAAEAEGRGPGPDQVAQAALGRVDRLLHA
+MAALLARAAEDVDAGRLDHGRGMVEADRIRGTVAQLCTEVVDVVGQATGPGPLTGSAAHA
+RAVADLQVYLRQHHAHRDDARLGRALLDGDADGG---WTW
+>KBS0714_MOLHKGIG_00057
+MAQPEPVRLVPGGAV------DRPAEQALLAAAAACDG-DVDAMVELL---RAASGAPSG
+ED-AAPLDLPLTGAGRTREQWELLASVAAQDLSAARVLEPHLDALSILSQAGVPAPAGLL
+GVYASESGGRTPALRPAPD--------------GPDTAWLLDGEKPWCSLADRCAAAVVT
+GREADGTRRAVLVDLSHPGVAETDSAWPALGLAPIRTVGLAFDAVPGSAVGGAEWYLRRP
+GFAWGGIGVAAVWFGGAVGIARTLRNATAARAAAEAEGRGPGPDQIGQAALGRVDRLLHA
+MAALLARAADDVDAGRLDHGRGMVEADRIRGTVAQLCTEVMDVVGQATGPGPLTGSAAHA
+RAVADLQVYLRQHHGHRDDARLGAALLTGETDGG---WTW
+>KD337_NAFOICDF_00278
+MSET-PWVHLPGAEGDGRPAAPTEAEAALLAAAR--DGEDGEAGIEPI---LA---LLSG
+DDAAASLDLPLTGAGRTRRQWELLASVGAVSLPAARVLEPHLDALSILDQAGVPAPRGVL
+GVYASESGGVSPSARPAPG------AAVGDE----DAVWRLDGDKPWCSLADRCTAAVVT
+ARQEDGLRRAFLVDLGEPGMEVADPRWPSLGLAPITTVGLRFADVPAVPVGGPEWYLRRP
+GFAWGGIGVAAVWFGGAVHVARTLRTSLERRTAAASDGSGPGPDQVGLAALGRVDRHLHA
+MASLLGRAADDVDAGRLDHAHGLVEADRIRGTVAQLCTEVLDVVGQATGPGPLTGDAAHA
+RAVADLQVYLRQHHGPRDDARLAESLLAADPAERAELQPW
+>SA211_MHAAABBN_02070
+MAQPEPVRLVPGGAV------DRPAEQALLAAAAACDG-DVDAMVELL---RAASGAASG
+ED-AAPLDLPLTGAGRTREQWELLASVAAQDLSAARVLEPHLDALSILSQAGVPAPAGLL
+GVYASESGGRTPALRPAPD--------------GPDTAWLLDGEKPWCSLAGRCAAAVVT
+GREADGTRRAVLVDLSHPGVAETDSAWPALGLAPIRTVGLAFDAVPGIAVGGAEWYLRRP
+GFAWGGIGVAAVWFGGAVGIARTLRNATAARAAAEAEGRGPGPDQIGQAALGRVDRLLHA
+MAALLARAADDVDAGRLDHGRGMVEADRIRGTVAQLCTEVMDVVGQATGPGPLTGSAAHA
+RAVADLQVYLRQHHGHRDDARLGAALLTGETDGG---WTW
+>TT9_LFPAFLNI_00052
+MAQPEPVRLVPGGAV------DRPAEQALLAAAAACDG-DVDAMVELL---RAASGAASG
+ED-AAPLDLPLTGAGRTREQWELLASVAAQDLSAARVLEPHLDALSILSQAGVPAPAGLL
+GVYASESGGRTPALRPVPD--------------GPDTAWLLDGEKPWCSLADRCAAAVVT
+GREADGTRRAVLVDLSHPGVAETDSAWPALGLAPIRTVGLAFDAVPGSAVGGAEWYLRRP
+GFAWGGIGVAAVWFGGAVGIARTLRNATAARAAAEAEGRGPGPDQIGQAALGRVDRLLHA
+MAALLARAADDVDAGRLDHGRGMVEADRIRGTVAQLCTEVMDVVGQATGPGPLTGSAAHA
+RAVADLQVYLRQHHGHRDDARLGAALLTGETDGG---WTW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000358.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000358.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1ed77a1019642e3d613e5dccb9f55c0deedbb07d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000358.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00344
+MSTQHPGIATDSPVSSDDDLRPGLDAAPVGPAGEDGDDPVREPLPTEALPLAPAGPRPEDPRAAVVRLRAAARSRAAHPR
+AVRVRQLKGLKRLLTEGQDRLVAALGQDLGKPATEALMTEVVSVRSEVDHALLHLTDWMEPRPAKLPLALRPASAEVRPR
+PKGLVLIIGAWNYPVQLTLAPLVGALAAGNAVVVSPSEKAPATAAALRELVAEHLDSALVSVVEGGKDCNTALLAEPWDH
+ILYTGGERVGRIVYEAAAKTLSPVTLELGGKSPAVVTPSRNTGAMARRIAWAKFTNAGQTCVAPDYVLAVGDVAHRQVVE
+ELPGALREFYGADPRASKDYGRLVSAEHAERLRDLLREDLDAGAVVLVGGDVDVAGRYMAPTVVTGVRPDGALMREEIFG
+PILPVLRVDTFQEALDFIAERPHPLAAYLFTDRPSYHRAFDDQVQAGGLGYDVGLLHAGIATLPFGGVGASGIGAYHGVH
+GFETFSHLRASITKSDQVDTLKTAYPPYGWVKRTMIPKML
+>KBS0714_MOLHKGIG_00054
+MSTQPPGLTTDAPDTPD-------------------DDPVREPLPTEALPIAPAGPRPEEPRAAVERLRAAARSRAAHPR
+AVRVRQLKGLKRMLTEHADRFVAALGTDLGKPATEALITEIVSVRSEVDHALLHLTDWMEPRPVKLPLALRPASAEVRPR
+PKGLVLVIGAWNYPVQLALAPVVGALAAGNTVVLSPSEKAPATAAALRELVPQYLDSALVSVVAGGKECNTALLAEPWDH
+ILYTGGERVGRIVYEAAAKTLSPVTLELGGKSPAVVTPSRNTGAMARRIAWAKFTNAGQTCVAPDYVLAVGEAALRQVTA
+ELPAALREFYGDDPRASKDYGRLISAEHAERLREMLQADLDAGAELLVGGDVDVAGRYMAPTVVTGVKPDGALMQEELFG
+PILPVLTVDTFQDALDFIAERPHPLAAYLFTDRPSYHRAFDDQVQAGGLGYDVGLLHAGIATLPFGGIGASGMGAYHGIH
+GFETFSHLRPSITKSDQVDTLKTAYPPYGRMKRALLPKML
+>KD337_NAFOICDF_00282
+MSTQPPGLTTDSPDSPA-------------------DDPVREPLPTEALPIAPAGPRPEEPRAAVERLRAAARSRAAHPR
+AVRVRQLKGLKRMLTEHADRFVAALGTDLGKPSTEALITEIVSVRSEVDHALLHLTDWMEPRPVKLPLALRPASAEVRPR
+PKGLVLVIGAWNYPVQLALAPVVGALAAGNTVVLSPSEKAPATAAALRELVPQYLDSALVSVVAGGKDCNTELLAEPWDH
+ILYTGGERVGRIVYEAAAKTLSPVTLELGGKSPAVVTPSRNTGAMARRITWAKFTNAGQTCVAPDYVLAVGEAALRQMTA
+ELPAALREFYGDDPRASRDYGRLISAEHAERLREMLQADLDAGAELFVGGDVDVAGRYMAPTVVTGVKPDGALMQEELFG
+PILPVLTVDTFQDALDFIAERPHPLAAYLFTDRPSYHRAFDDQVQAGGLGYDVGLLHAGIATLPFGGIGASGMGAYHGIH
+GFETFSHLRPSIAKSDQVDTLKTAYPPYGRMKRALLPKML
+>SA211_MHAAABBN_02067
+MSTQPPGLTTDSSDTPD-------------------DDPVREPLPTEALPIAPAGPRPEEPRAAVERLRAAARSRAAHPR
+AVRVRQLKGLKRMLTEHADRFVAALGTDLGKPATEALITEIVSVRSEVDHALLHLTDWMEPRPVKLPLALRPASAEVRPR
+PKGLVLVIGAWNYPVQLALAPVVGALAAGNTVVLSPSEKAPATAAALRELVPQYLDSALVSVVAGGKECNTELLAEPWDH
+ILYTGGERVGRIVYEAAAKTLSPVTLELGGKSPAVVTPSRNTGAMARRIAWAKFTNAGQTCVAPDYVLAVGEAALRQVTA
+ELPAALREFYGDDPRASRDYGRLISAEHAERLREMLQADLDAGAELLVGGDVDVAGRYMAPTVVTGVTPDGALMQEELFG
+PILPVLTVDTFQDALDFIAERPHPLAAYLFTDRPSYHRAFDDQVQAGGLGYDVGLLHAGIATLPFGGIGASGMGAYHGIH
+GFETFSHLRPSITKSDQVDTLKTAYPPYGRMKRALLPKML
+>TT9_LFPAFLNI_00049
+MSTQPPGLTTDSPDSPA-------------------DDPVREPLPTEALPIAPAGPRPEEPRAAVERLRAAARSRAAHPR
+AVRVRQLKGLKRMLTEHADRFVAALGTDLGKPATEALITEIVSVRSEVDHALLHLTDWMEPRPVKLPLALRPASAEVRPR
+PKGLVLVIGAWNYPVQLALAPVVGALAAGNTVVLSPSEKAPATAAALRELVPQYLDSALVSVVAGGKECNTALLAEPWDH
+ILYTGGERVGRIVYEAAAKTLSPVTLELGGKSPAVVTPSRNTGAMARRIAWAKFTNAGQTCVAPDYVLAVGEAALRQVTA
+EIPAALREFYGDDPRASKDYGRLISAEHAERLREMLQTDLDAGAELLVGGDVDVAGRYMAPTVVTGVRPDGALMQEELFG
+PILPVLTVDTFQDALDFIAERPHPLAAYLFTDRPSYHRAFDDQVQAGGLGYDVGLLHAGIATLPFGGIGASGMGVYHGIH
+GFETFSHLRPSITKSDQVDTLKTAYPPYGRMKRALLPKML
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000363.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000363.fa
new file mode 100644
index 0000000000000000000000000000000000000000..10cddf95d97a68ddb111f02b0a25ef9de3dddddc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000363.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00356
+MRARRRAGLFSAGVRGYDGRVSTV-------SAP---SRAPRTVTVTGAAGNIGYALLFR
+IAAGGMLGPDTPVRLRLLEIPAALRAAEGTAMELADAAFPLLADVEVTDDPAVAFDGVQH
+AMLVGARPRTKGMERGDLLEANGGIFGPQGRAINDHAADDVRVVVVGNPANTNALIAAAH
+APDVPAERFTALTRLDHNRAVAQLAARAGVAVTDVDGVTIWGNHSATQFPDLTHARVRVA
+G-----AWRPALEVVDPAWAAEEFVPRVAKRGAEIIEVRGASSAASAASAAVDHMRDWTL
+GTGAGAGGAGTDAGPRWTSAAVVSDGSYGVPEGLVSSFPVTSDGGAAWRIVPGLAPDESL
+LPGTGGRLAATVAELEAERDAVHGLGLL
+>KBS0714_MOLHKGIG_00044
+M-----------------GGVDTAQQTTAQDTAQDPASTTPRTVTVTGAAGNIGYALLFR
+IAAGGMLGPDTSVRLRLLEIPAALGAAEGTAMELADAAFPLLADVEVTDEPARAFDGVQH
+ALLVGARPRTKGMERSDLLEANGGIFGPQGRAINDHAAQDVRVVVVGNPANTNALIAAAH
+APDVPAERFTALTRLDHNRAVAQLAARAGVAVTDVAGVTIWGNHSATQFPDLTHARVRVD
+G-----TWRPALEVVDPVWAGEEFVPRVARRGAEIIEVRGASSAASAASAAIDHMCDWTL
+GTGVDADGA-----SRRTSAAVVSDGSYGVPEGLISSFPVTSDGGTAWRIVPGLEPDESV
+LPGEGGRLAATVAELEAERDAVRGLGLL
+>KD337_NAFOICDF_00298
+M---------------------------TQDTL-----RTPATVTVTGAAGNIGYALLFR
+IASGQLLGPDTPVRLRLLEIPAAVRAAEGVAMELADSAFPLLASVDVTDSADAAFDGTTH
+ALLVGARPRTAGMERADLLRANGGIFGPQGAAINASADASVRVVVVGNPANTNALIASAH
+APDVPAERFTALTRLDHNRAVSQLAARAGVGVADVDGITIWGNHSATQFPDLTHARVRMS
+GDDGAPVWRPALEVVDPAWAAEEYIPRVAKRGAEIIEVRGASSQGSAASAAIDHMRDWSL
+GTGVDADGA-----PRRTSAAVVSDGSYGVPEGLISSFPVTSDGSGAWTIVPGLEPDESL
+LPGDGGRLAATVAELEAERDAVRALGLI
+>SA211_MHAAABBN_02057
+M---RRAGVSSAGERGHDGGVDTALQTTAQDTAPDPVSTTPRTVTVTGAAGNIGYALLFR
+IAAGGMLGPDTPVRLRLLEIPAALGAAEGTAMELADAAFPLLADVEVTDDPARAFDGVQH
+ALLVGARPRTKGMERGDLLEANGGIFGPQGRAINDHAAQDVRVVVVGNPANTNALIAAAH
+APDVPAARFTALTRLDHNRAVAQLAARAGVAVTDVSGVTIWGNHSATQFPDLTHARVRVD
+G-----TWRPALEVVDPVWASEEFVPRVARRGAEIIEVRGASSAASAASAAIDHMRDWTL
+GTGVDADGA-----PRRTSAAVVSDGSYGVPEGLISSFPVTSDGGTAWRIVPGLEPDESV
+LPGEGGRLAATVAELEAERDAVRGLGLL
+>TT9_LFPAFLNI_00039
+M---RRAGVSSAGERGHDGGVDTAQQTTAQDTAPDPASTTPRTVTVTGAAGNIGYALLFR
+IAAGGMLGPDTPVRLRLLEIPAALGAAEGTAMELADAAFPLLADVEVTDDPARAFDGVQH
+ALLVGARPRTKGMERGDLLEANGGIFGPQGRAINDHAAQDVRVVVVGNPANTNALIAAAH
+APDVQAARFTALTRLDHNRAVAQLAARAGVAVTDVSGVTIWGNHSATQFPDLTHARVRVD
+G-----TWRPALEVVDPVWASEEFVPRVARRGAEIIEVRGASSAASAASAAIDHMRDWTL
+GTGVDADGA-----PRRTSAAVVSDGSYGVPEGLISSFPVTSDGGTAWRIVPGLEPDESV
+LPGEGGRLAATVAELEAERDAVRGLGLL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000366.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000366.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c2ce69161f5dff02aef1ad58b676422ce1e3ab52
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000366.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00360
+MGPRRGLPEGEGPLSGARGGRGAGRQRASRGGPARSTRTGGRAGAKGGGPQRAGSGSRAG
+GEGRRR-APSAPADLAAPPETLFLATIPGATPSTWVDRFTTRQRVVQLVNHDEASQLAHL
+AHDDAGMPRHPLPQLGYVRRRRDVEAEEMLRAAGVDPRRVHLVGVYAELPVVCVGRDHLL
+AAWDAEADGPVPLAELDSHEELDPARFAAAP--VEDPLDSAELPGAGERMALEIAASGAG
+HVVLPMSVARMFGRKDVVVLPLASALDDTVGMSRADREAAATR-------AEVEADAGDA
+GTAAAGPGEADDDAARHPGWDVALAWLKEADSELVQSFVGVARGRRGNSSR
+>KBS0714_MOLHKGIG_00040
+M-------------------------------------------AKGVKP-----AGRAG
+GEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQLVNHDDAAQLAHL
+AHDDAGQPRHFLPQLGYVRRRRDVSAEEFLRAGDVDPRHVHLVGVYSELPVVCVGRDHLL
+AAWDVDADGPVPPAELDPDEELDPARFAPAP--SPEPMDAAELPGAGERMALEIAASGAG
+HVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQARAEAEAGAA
+VVDGADPAGHGDDDARHPVWDVALAWLKAADSELVQAFVGVARGRRGASSR
+>KD337_NAFOICDF_00301
+------------------------------------------------------------
+-------MPAAPADLPTPPETLFLATIPGATPSTWVQRFSSRARTVQLVNHEEAQQAAHL
+AHDAAGAPLHPLPQLGYVRWLRDAGVESVLRESGVDPRFVHVVGVYSELPVVCVGKEHLL
+AAWDLEADGPVPLAELDPAEHMDPARFAPEPGAASNPLDSAELPGAGERMALEIVASGVG
+HVVLPQSVARVFGRKDVVVLPVACELDDVVGLSRADREAAATRAEVAE-------EGDGV
+VPDGAD--APATTAPRHPGWDVGLAWLKEQDSELVQSFVGVARGRRGGTSR
+>SA211_MHAAABBN_02053
+M-------------------------------------------AKGVKP-----AGRAG
+GEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQLVNHDDAAQLAHL
+AHDDAGQPRHFLPQLGYVRRRRDVSAEEFLRAGGVDPRHVHLVGVYSELPVVCVGRDHLL
+AAWDVDADGPVPPAELDPDEELDPARFAPAP--SAEPMDAAELPGAGERMALEIAASGAG
+HVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQARAQAEAGAA
+VVDGADPAGQGDDDARHPGWDVALAWLKAADSELVQAFVGVARGRRGASSR
+>TT9_LFPAFLNI_00035
+-----------------------------------------------MKP-----AGRAG
+GEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQLVNHDDAAQLAHL
+AHDDAGQPRHFLPQLGYVRRRRDVSAEEFLRAGDIDPRHVHLVGVYSELPVVCVGRDHLL
+AAWDVDADGPVPPAELDPDEELDPARFAPAP--SPEPMDAAELPGAGERMALEIAASGAG
+HVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQARAEAEAGAA
+VVDGADPAGQGDDEARHPGWDVALAWLKAADSELVQAFVGVARGRRGASSR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000372.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000372.fa
new file mode 100644
index 0000000000000000000000000000000000000000..79d7d362fde879b238fc002af26a8dd8f6475484
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000372.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00373
+MTLVLRYAARSDVGRVRAKNDDSAYVGRHLVVLADGMGGHVGGDVASASTVLDLAPLDAVGYEDPATVLPDEIQNANLIL
+NELVHANPKLAGMGTTCTAGLLAGTTLHMAHIGDSRAYRLADGEFSQVTTDHTFVQKLVDEGRLEAGEAPFHPNKNVLMR
+VLGDVDASPELDVFEVPVAPGERWLFCSDGLTDVVSSEKIHEVLRDSEALNQAVDTLVDLTLKGGAPDNVTVVAFEIAEG
+TAEEMAPVPDVHLTEQALAAAHPPEVGPVSGLLLREDLDARPHLLVGAASNAVKTDRIPVVTRSSTRRRAAALLGETPVP
+ENRPRRTAAVLT-----DGPDR--DAAPRPDASAPPAAPSGTAAAAGSSSAAAPTATVADHPSDEAAEVSTRAATPAPAT
+AGPAGGSQDGAARRRRGKDDRPVQYRRGWFIPVFTTLLALTLAAVAVWGYLWTQTQYYVGANDGRIAVFKGVSQRLGPLE
+LSHVDRQTDLPVDALPVYARDRVNAGMAARDVDHAEQIVAELRDSLHPDAPAPAGEPSERAQPSTTPSSSSARPSDASGS
+AAPTSPTASPSATGGEAP
+>KBS0714_MOLHKGIG_00023
+MTLVLRYAARSDVGRVRAKNDDSAYVGRHLVVLADGMGGHVGGDVASASTVLDLAPLDAVGYEDPATVLPDEIQNANLIL
+NELVHANPKLAGMGTTCTAALLAGTTLHIAHIGDSRAYRLANGEFSQVTTDHTFVQKLVDEGRLEAGEAPFHPNKNVLMR
+VLGDVDASPELDVFEVPVAPGERWLFCSDGLTDVVSPEKIHEVLRDSEALNQAVDTLVDLTLKGGAPDNVTVVAFEIAEG
+TAEELAPVPDVHLSEQALAAAHPPEVGPVSGLLLREDLDARPHLLVGAASNAVRTDRIPVVTRSSTRRRAAALLGETPVP
+ENRPRRTAAVLT-----DGPDP--DVAARPDPSAPPAAPRGTAAAVGSSSAATPAATAADQPSDEAAEASATAPTPAPAT
+SGPAGGPEDGAARRRRGKDDRPVQYRRGWFIPVFTTLLALTLAAVAVWGYLWTQTQYYVGANDGRIAVFKGVSQRLGPLE
+LSHVDRQTDLPVDALPAYARDRVNAGMPARDVDHAEQIVAELRDSLHPNAPAPAGEPSERARPSTTPSSSSARPSDASGS
+TAPTSPASSPSATGGEAP
+>KD337_NAFOICDF_00355
+MTLVLHHAARTDVGRVRSKNDDSAYAGRHLAVLADGMGGHVGGDVASASTVLDLAHLDDVGYEDPATVLPDEIQNANLVL
+TSLVHANPKLAGMGTTCTAGLLAGEVLHMAHIGDSRAYRLKDGEFTQVTRDHTFVQKLVDEGRLEAAEAQFHPNKNVLMR
+VLGDVDASPELDVFEVPVAPGERWLLCSDGLTDVLSVERIRELIEPPATLAEAADALVAHTLRGGAPDNVTVVVFDVAEG
+SPEELEPAGEVHLSDEALAAAHPADRGPVSGRLLAEELDARPHELVGAADAAVHSDRIPVVTRSATRRRAGVLLGESPVP
+ENRPRRTAAHLTAPNASDVDDA--PAAPLTAAASPIETPAPADAATETPAVDAP----APAPGPEVDPADADAAPAPAAD
+PAPAHAVETGRTSRRR-RRDRPVEYRRGWFIPVFTALLALILVVVAVWSYLWTQTQYYVGEDAGSVAVFQGVPQQLGPLE
+LSHLDHTTDIPLDRLPAYAQERVGRGMAATDRAHADQIVEELR-TVSDTAAKGGGTP-----------------------
+------------------
+>SA211_MHAAABBN_02041
+MTLVLRYAARSDVGRVRAKNDDSAYVGRHLVVLADGMGGHVGGDVASASTVLDLAPLDAVGYEDPATVLPDEIQNANLIL
+NELVHANPKLAGMGTTCTAGLLAGTTLHIAHIGDSRAYRLADGEFSQVTTDHTFVQKLVDEGRLEAGEAPFHPNKNVLMR
+VLGDVDASPELDVFEVPVAPGERWLFCSDGLTDVVPPEKIHEVLRDSEALNQAVDTLVDLTLKGGAPDNVTVVAFEIAEG
+TAEELAPVPDVHLSEQALAAAHPPEVGPVSGLLLREDLDARPHLLVGAASNAVKTDRIPVVTRSSTRRRAAALLGETPVP
+ENRPRRTAAVLT-----DGPDP--AAAPRPDASVPPAAPSGTAAAAGSSSAATPAATAADHPSDEAAEPMTTAPTPAPAT
+AGPAGGPEDGAARRRRGKDDRPVQYRRGWFIPVFTTLLALTLAAVAVWGYLWTQTQYYVGANDGRIAVFKGVSQRLGPLE
+LSHVDRQTDLPVDALPAYARDRVNAGMPARDVDHAEQIVAELRDSLHPNAPAPAGEPSERARPSTTPSSSSARPSDASGS
+TAPTSPASSPSATGGEAP
+>TT9_LFPAFLNI_00023
+MTLVLRYAARSDVGRVRAKNDDSAYVGRHLAVLADGMGGHVGGDVASASTVLDLAPLDAVGYEDPATVLPDEIQNANLIL
+NELVHANPKLAGMGTTCTAGLLAGTTLYMAHIGDSRAYRLVDGEFCQVTTDHTFVQKLVDEGRLEAGEAPFHPNKNVLMR
+VLGDVDASPELDVFEVPVAPGERWLFCSDGLTDVVSPEKIHEVLRDSEALNQAVDTLVDLTLKGGAPDNVTVVAFEIAEG
+SAEELAPVPDVHLSEQALAAAHPPEVGPVSGLLLREDLDARPHLLVGAASNAVKTDRIPVVTRSSTRRRAAALLGETPVP
+ENRPRRTAAVLT-----DGPGPAADAAPRPDASAPPAAPSGTAAAAGSSAAATPAATAADRPSDEAAEASTTAATPSPVT
+SGPAGGSEDGAARRRRGKDDRPVQYRRGWFIPVFTTLLALTLAAVAVWGYLWTQTQYYVGANDGRIAVFKGVSQRLGPLE
+LSHVDRQTDLPVDALPAYARDRVNAGMAARDVDHAEQIVGELRDSLHPDAPAPAGEPSERARPSTTPSSSSARPSDASGS
+AAPTSPASSPSATGGEAP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000376.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000376.fa
new file mode 100644
index 0000000000000000000000000000000000000000..390e699b10a52a0cb54307711ebd098bacf67e0d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000376.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00377
+--MEEQWTLNGRYRIDALIGRGGMADVFRGTDLRLHRPVAVKLMRRDLARDPHFQARFRKEARSVASLNHPSIVSVYDTG
+EVSLEDGHHPVDCPYLVMELVTGRSLREVLHAEGAVGTERAVAWTREVLEALEHAHQEGIVHRDVKPANVMVTDAGSVKV
+MDFGIAHALADTSATTSQTQAVVGTALYLAPEQATGRTVDGRADLYATGCVLFELLTGRPPFTGDTPLAVAYQHVREAPP
+APSEVDPDLPRAFDPVLLRALEKDPEDRFPTGAAFREALEAAAADPHAAVDADTAALDLVRAGAA--GAGGAAVAAGREV
+RRDGARDS---ADVPTA-------------AVPLTPAPAPAAPAEP--AEPPGGEPRRGRGRAARRRLRRPAGGRRLRGR
+PAPGHRLPTPPSRGPRRPAPRPPPGSALPPPLPPP--DGAAAGGAACRS-------------------------------
+--------------------------------------------------------------------------------
+---------------------------------------------------PGCC-------------------------
+--------------------------------------------------------------------------------
+-------WPASSC-------------------------------------------------------------------
+-------------------------------------
+>KBS0714_MOLHKGIG_00019
+--MDEQRTLNGRYRIGELIGRGGMADVFRGEDLRLHRPVAVKLMRRDLARDPHFQARFRKEARSAASLNHPSIVSVYDTG
+EVSLEDGLHPVDCPFLVMELVSGRTLREILHAEGAVGPDRAVAWTRGVLEALEHAHEEDIVHRDVKPANVMVTDTGTVKV
+MDFGIAHALADTSATTSQTQAVVGTALYLAPEQATGRTVDGRADLYAAGCLLFELLTGRPPFTGDTPLAVAYQHVREEPP
+APSDVDPDLPPAFDPVVLRALRKDPQDRFPTGAAFLAALEEAAADPHAGPGRHTPPLDAVHPALV--GAGGAVLGATP--
+----AEHGADVADVPTA-------------AVPLT----RPAPSVP--AEPDTAQPQAVNHAVAGAGLPGAASAAQLAA-
+-AAAMDGPRPVTGG----QPVTPGAAATPRPEPPPRDTPAPATATPRRVRRRVRRR-TLLAAGVVLVALALVLAPWLAAA
+L------RTTAEVPAVVGLQQDEAVAALEDAGLVAVVSSAYMADAPDGTVTQSDPPTGTEVPRGAEVRIRVSRGEEGIAL
+SDSLHGLSEDAARRELERLGLRVSSVQYQDDGRLERGLLARTDPAMGTHVPPGSSVVLHLSSGMVAVPDVVGMSAPDARR
+QLALSAPELRVRIQDEDGATTDTGTVVAQDPPAGVRVDNRSSLTLTTSSWIAPTAEPSEPAPPSSEAPEPT-PSASTSPS
+PPSSESPEPSESPEPSESAEPSPSPSASATPSPEPTTTATPSPTQSPSPPSAAPSTSSEP-TEQSPST-SPTATPVDPLP
+TLTPDP--EPSIDPPPST-------------------
+>KD337_NAFOICDF_00359
+--MQGQRILHERYRVDELIGRGGMADVFRGHDLRLNRTVAVKMMRPDLARDPAFQARFRTEARHAAALNHPNIVSVYDTG
+DALLDDGPQSVECPYLVMEHVDGRTLRELLDA-GEVAWRDAVEWTRGLLHALDHSHRQRIVHRDVKPANVMVTRDGGVKV
+MDFGIARALSDTSAHTGQTQAVVGTALYLPPEQAQGARVDARSDLYAAGCVLFELLTGRPPFTGETPLAIAYQHVREEPP
+APSAVDPSLSTEFDSVVLRALQKDPGLRHQHAREFLSALDFAAARAARAADDDAPTRVVPASGAAPLATGSGALAAAV--
+----AGST---AAGPTASGSTALGAGGAPEARPAT----GPPATTPLGAAAGPTEPLIAGHAVAGAAVPGAPSASQLAA-
+-AEAVE-----------------TAPAAASTTGGS--AGAGATSGAERAGRRHRLSWAVLAAVAAVAAVAAILA--LGAA
+LLIGSRDPGPVTVPALAGRTEAEAVSALTGLGLRSAISPDYHSTEPDGRVLKVHPGAGAAVEPGSTVNLSVARGGEGVVL
+PTSLRGASEARVRQELARLGLNVASVEDTPSGELDRGALVQTDPVLGSRVPPGSAVVLHLADGTARVPSLVGMTGADART
+TLAALDPEMTVRFQGAAGADPDTGVVVLQDPAAGTVVDNTAMITLITSAEATPTASAVTVAPPDPALPSATTTTAPAEPS
+PG-----VPAPTT-PAAPAVDTPAPAPATTPAPAPESSSTPGAGTDPAPTESAPTPDDGPGSTGTPSTEAPTEAPTDPVG
+TPAPSPSGEPVPQPSPSVEPLPEPTAPTEAPTADPAG
+>SA211_MHAAABBN_02037
+MSVDEQRTLNGRYRIGELIGRGGMADVFRGEDLRLHRPVAVKLMRRDLARDPHFQARFRKEARSAASLNHPSIVSVYDTG
+EVSLEDGLHPVDCPFLVMELVSGRTLREILHAEGAVGTDRAVAWTRGVLEALEHAHEEGIVHRDVKPANVMVTETGAVKV
+MDFGIAHALADTSATTSQTQAVVGTALYLAPEQATGRTVDGRADLYAAGCLLFELLTGRPPFTGDTPLAVAYQHVREEPP
+APSDVDPDLPPAFDPVVLRALRKDPEDRFPTGTAFLAALEEAAADPHAGPGRHTPPLDAFPPALV-----GAVLGAAA--
+----AEHG---ADVPTA-------------AVPLT----RPTPSVP--AEPDAAQPQAANHAVAGAGLPGAASAAQLAA-
+-AAAMDGPRPVTVG----QPVMPGAAATPWPEPQG-DTPAPATATPRRVRRRLRRR-TLPAAGVVLVALALVLTPWLAAA
+L------RTTVEVPAVVGLQQDEAVVALEDAGLLAVVSSAYMADAPDGTVTQSDPPTGTEVPRGAEVRIRVSRGKEGIAL
+SDSLHGLSEDAARRELERLGLRVSSVQYQDDGRLERGLLARTDPAMGTHVPPGSSVVLHLSSGMVAVPDVVGMSAPDARR
+QLALSAPELRVRIQDEDGATTDTGTVVAQDPPAGVRVDNRSSLTLTASSWIAPTAEPSEPAPPYSEAPEPT-PSASASPS
+PP------PSESSEPSESAEPSPSPSASATPSPEPTTTATPSPTQSPSPTSAAPS---EP-TEQPPST-SPTATPVDPLP
+TLTPDP--EPSIDPPPST-------------------
+>TT9_LFPAFLNI_00019
+--MDEQRTLNERYRIGELIGRGGMADVFRGEDLRLHRPVAVKLMRRDLARDPHFQARFRKEARSAASLNHPSIVSVYDTG
+EVSLEDGLHPVDCPFLVMELVSGRTLREILHAEGAVGTDRAVAWTRGVLEALEHAHEEGIVHRDVKPANVMVTDTGTVKV
+MDFGIAHALADTSATTSQTQAVVGTALYLAPEQATGRTVDGRADLYAAGCLLFELLTGRPPFTGDTPLAVAYQHVREEPP
+APSDVDPDLPPAFDPVVLRALRKNPQDRFPTGAAFLAALEEAAADPHAGPGRHPPPLDAVHPALV-----GAVLGATP--
+----AGHG---ADVPTA-------------AVPLT----RPTPSVP--AEPDTTQPQAANHAVAGAGLPGAASAAQLAA-
+-AAAMDGPRPVTAG----QPVTAGQPVTPRPEPPPGDTPAPATATPRRVRRRVRRR-TLLAAGMVLVALALVLAPWLAAA
+L------RNTVEVPAVVGLQQDEAVAALEDAGLVAVVSSAYMADAPDGAVTQSDPQTGTEVPRGAEVRIRVSRGEEGIAL
+SDSLHGLSEDAARRELERLGLRVSSVQYQDDGRLERGLLARTDPAMGTHVPPGSSVVLHLSSGMVAVPDVVGMSAPDARR
+QLALSAPELRVRIQDEDGATTDTGTVVAQDPPAGVRVDNRSSLTLTASSWIAPTAEPSEPAPPSSEAPEPT-PSASAPPS
+PP------PSESPEPSESAEPSPSPSASATPSPDP-TSATPSPTQSPSPPSAAPSTSPEP-TAQSPST-SPTGTPVDPLP
+TLTPDP--EPSIDPPPST-------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000378.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000378.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ba0697498e22ab8a99af3d9672b5a2117dd8f5db
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000378.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00380
+MAAPSGKRKDSARRKHEELEDARRGARRGSSA-VTTDLGDVDPGPKPLSPVYKAVMFGLM
+IVGLLWIVVYYLTQGLFPIVAIGGWNILVGFGIALVGFLMMSRWSE
+>KBS0714_MOLHKGIG_00017
+MAAPAGKRKDSARRKREELE----AARRSRSA-VRTDLGDVDPGPKPLSPVYKAVMFGLL
+ILGLLWIIVYYLTQGLLPIVQIGGWNILVGFGIALVGFLMMSRWSE
+>KD337_NAFOICDF_00361
+MATTSGKRKDSARRKRRELEQAR--SRRGRTASVSTDLGDVDATPAPLPRWYKAVMFGLL
+ILGLLWIVVYYLSQGLFPIPDAGGWNILIGFGIALVGFLMMSRWSE
+>SA211_MHAAABBN_02035
+MAAPAGKRKDSARRKREELE----AARRSRSA-VRTDLGDVDPGPKPLSPVYKAVMFGLL
+ILGLLWIIVYYLTQGLFPIVQIGGWNILVGFGLALVGFLMMSRWSE
+>TT9_LFPAFLNI_00017
+MAAPAGKRKDSARRKREELE----AARRSRSA-VRTDLGDVDPGPKPLSPVYKAVMFGLL
+ILGLLWIIVYYLTQGLFPIVQIGGWNILVGFGIALVGFLMMSRWSE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000379.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000379.fa
new file mode 100644
index 0000000000000000000000000000000000000000..db594e3041cefba86954e13b9120ff64d584ad1c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000379.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00381
+-----------------------------------------MDCAAQGGA--PAGTTTSP
+AAVGS-PGP----GGVGMAGAAGRGAPARRRTGLAAAPVTWTLIAVTVAAYVAQWATRDT
+VPGVTEALWYAGLYTSPFGLEPWRMATYALVHDLSGPTHLILNMLALWVIGRVLEPALGW
+WRFAALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGMFAALFLVTRVRGGQVRSIAVLI
+GLNLVISFLLPGISWQVHVGGLITGAVVALVYSLAGGLRPGR-------ASAPSAGAQAA
+GLVLVAAVLAVLTVLGADRIGLDAVLR
+>KBS0714_MOLHKGIG_00016
+MSTTPSDPHGPDSADGTPPVCPRHPGRAAYVRCAVCRRPACLDCQRPGSAAGPVCVDCAS
+GVVAG-PAP----TVAP-AGAAA-SVPARRRTGFTASPVTWILLAVTTVVYAAQWMTRDQ
+ASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTHLLLNMLALWVIGRVLEPALGW
+WRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGMFAALFLLTRVRGGQVRSIAVLI
+GLNLVFSFLLPGVAWQVHMGGLLTGAVVAVVFSLAGGLRPGR-------ARVPSVGAQVA
+GLVVVAAALAALTVLGAARVTVAGLLG
+>KD337_NAFOICDF_00362
+MSTTPSDPHGPDVAEGTPPVCPRHPGRAAYVRCASCADPVCLDCQRPAAGGLTLCPDCAA
+RLAAGVPGPASGTTTSPAPASAG-AGRGGVGAALRAAPVTWTLLAVTLLVYAGQWLTRGS
+RTGVTESLWYAGAYTSAIGMEPWRMLTYALVHDVSGPTHVALNMVALWVIGRVLELALGW
+WRFLALYLVSALGGAVFALWTADPLQPVVGASGAVYGLFAALFAVTRFRGGQVTSIAVLI
+GLNLVFSFLMPGISWQVHVGGLLTGAVAGALLVSAGG-PPGRSAAADGTARRSSAGVHVA
+GLVLLAAVLAVLTLVGAARLSPAALLG
+>SA211_MHAAABBN_02034
+MSTTPSDPYGPDSADGTPPVCPRHPGRAAYVRCAVCRRPACLDCQRPGSAAGPVCVDCAS
+GVVAG-PAP----TSPPAAGAAA-TVPARRRTGFAASPVTWILLAVTTVVYAAQWMTRDQ
+ASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTHLLLNMLALWVIGRVLEPALGW
+WRFLALYVLSAVGGAVFALWASDPLQPVVGASGAVYGMFAALFLLTRVRGGQVRSIAVLI
+GLNLVFSFLLPGVAWQVHVGGLLTGAVVAVVFSLAGGLRPGR-------ARLPSVGAQVA
+GLVVVAAALAALTVLGAARVTVAGLLG
+>TT9_LFPAFLNI_00016
+MSTTPSDPHGPDSADGTPPVCPRHPGRAAYVRCAVCRRPACLDCQRPGSAAGPVCVDCAS
+GVVAG-PAP----TVAP-AGAAA-SVPVRRRTGFAASPVTWILLAVTAVVYAAQWMTRDQ
+ASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTHLLLNMLALWVIGRVLEPALGW
+WRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGMFAALFLLTRVRGGQVRSIAVLI
+GLNLVFSFLLPGVAWQVHVGGLLTGAVVAVVFSLAGGLRPGR-------ARVPSVGAQAA
+GLVVVAAALAALTVLGAARVTVAGLLG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000380.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000380.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ae9814f94ba25425abe15484a0e691bc4a51465b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000380.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00382
+MARMANATHIATIKTNQGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTGEKNNGAPL
+YSGTVFHRIIKDFMIQGGDPLGMGVGGPGYQFGDEIHPELQFDRPYLLAMANAGPGTNGS
+QFFITSVPTGWLNGKHTIFGEVKDEESQQVVDRLNAVATDPRDRPLEDVVIESVEIAEA
+>KBS0714_MOLHKGIG_00015
+MGRMANKTHTATIHTNHGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTGEKNNGAPL
+YSGTVFHRIIKDFMIQGGDPLGMGIGGPGYQFGDEIHPELQFDRPYLLAMANAGPGTNGS
+QFFITSVPTGWLNGKHTIFGEVKDEASQKVVDELNAVATDPRDRPLEDVVIESIDIDEA
+>KD337_NAFOICDF_00363
+MTRMTNATQIATIHTNQGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTGEKNNGAPL
+YSGTVFHRIIKDFMIQGGDPLGMGIGGPGYQFGDEIHPELQFDRPYLLAMANAGPGTNGS
+QFFITSVPTGWLNGKHTIFGEVKDEASQKVVDQLNSVATDPRDRPLEDVVIESVEISEA
+>SA211_MHAAABBN_02033
+MGRMANKTHTATIHTNHGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTGEKNNGAPL
+YSGTVFHRIIKDFMIQGGDPLGMGIGGPGYQFGDEIHPELQFDRPYLLAMANAGPGTNGS
+QFFITSVPTGWLNGKHTIFGEVKDEASQKVVDELNAVATDPRDRPLEDVVIESIDIDEA
+>TT9_LFPAFLNI_00015
+MGRMANKTHTATIHTNHGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTGEKNNGAPL
+YSGTVFHRIIKDFMIQGGDPLGMGIGGPGYQFGDEIHPELQFDRPYLLAMANAGPGTNGS
+QFFITSVPTGWLNGKHTIFGEVKDEASQKVVDELNAVATDPRDRPLEDVVIESIDIDEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000381.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000381.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7a0f0bf7b5972cd2de3b378e8888cc71d34a4e32
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000381.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00383
+MARTTLNDEIQHDGGADTFVTRQTENLRHWAAPKLEAARTWGEYGAAFTGVGASVAAEEG
+RRAAHDAKQEYGPRVEKQAKRAGDAVADRYAKLAPAVATGAG----VLQDVLHRLQEQAQ
+EAGHEAQKQFADARKDAEKAAEKGRKRGAKKAKQVRRAGR----GARKDVTKAARGARKD
+ARQAGSFLADRAGQAGSAAAAGGLTLAGALAAAVNALQEQGEKLAPQVQARLSDAGDYAQ
+RRKEEVVPLAAARLADGAAHARKTAHDVQVPDAVEQALIALTGDKAIVRKLRKGAEQYAG
+SAEKDLNRAAGRKA-RSGGRGWILGGMALAAAGAGYALWRLTKPVQDPWTAPVPGPITAN
+IPVVEAN---NPYAQQQKVVAESGSAAAGEGVRVDTAAPVTTAVPAQDPVAEANAKVLGT
+D----R
+>KBS0714_MOLHKGIG_00014
+MARKTLHDEIQHDGGANAFVARQAENLRHWAAPKVESTRAWSEVAAAYGLIGGSAAAEEG
+RRKAQDAKKEYGPVVERGARKAGEAVAHQYGLLAPAVAKGVD----TVQDFLEHLQAQAQ
+DAGHEVQQQFAAARKDAEKAAKKGRRRGGRKAKQLRRDGRQAAKGLRKDAKKAAKGARKD
+AQRSAALFSDRAGQAKDAAAAGGLTLAGLLATGLSALQEQGGKVAPQVQARLADAGDYAQ
+RRKEEVLPVAAARLADGAAHARKTAHDVEVPDALEQALIKLTGDKAIVQRLRQGAEQYAG
+AAEKDLNRAAGRRASRSGGRAWIVAGMAAAAAGAGFALWRLTKPVQDPWTAPVPGPITAN
+IPVVEAN---NPYAQQQKVVAEAGSAAAGQGVRVDTATP--------DPVAAANAKVLGV
+QPGQQR
+>KD337_NAFOICDF_00364
+MARTTLSNEIEHNGSADTFFARQAENLRHWAAPQLENARAWAEVTTGFGQVGGKVAAAEG
+RRLAE---EEVAPRVKDSAERVNAAAKGRYEKAAPVVATGLGAAGTVLQQLLEAAQDKAQ
+QAGQQVQDLAEQAQKDAKKSAKR----------------------TRKDAKKAGKRVSKK
+ADKAQSLFASKAGDAKGAAAAGGLNVAGLLAAAVAAAQDRGQELAPQVKGRVEQAAQYAQ
+DRRAEYAPKAAASLAGVAGRAEKAAGDVTVPASVEQLLVKLTGDKNAVKHLRQDVQSRAR
+ETQKGLKKQARQESRRGGATGWIIAGMAAAAAGAGLAVWKLTKPVQDPWAAPVPGPITAN
+IPVVQADGTVNPYAKQEQAVAEARAAQGG---------------------------MVNV
+RP-QVG
+>SA211_MHAAABBN_02032
+MARTTLHDEIQHDGGANAFVARQAENLRHWAAPKVESTRAWSEVAAAYGLIGGSAAAEEG
+RRKAQDAKQEYGPVVERGARKAGEAVAHQYGLLAPAVAKGVD----TVQDFLEHLQAQAQ
+DAGHEVQQQFAAARKDAEKAAKKGRHRGGRKAKQLRRDGRQ-----------AAKGARKD
+AQRSAALFSDRAGQAKDAAAAGGLTLAGLLATGLSALQEQGGKVGPQVQARLADAGDYAQ
+RRKEEVLPVAAARLADGAAHARKTAHDVEVPDALEQALIRLTGDKAIVQRLRKGAEQYAG
+AAEKDLNRAAGRRTSRSGGRAWIVAGMAAAAAGAGYALWRLTKPVQDPWTAPVPGPIAAN
+IPVVEAN---NPYAQQQKVVAEAGSAAAGEGVRVDTAAP--------DPVAAANAKVLGV
+QPGQQR
+>TT9_LFPAFLNI_00014
+MARTTLHDEIQHDGGANAFVARQAENLRHWAAPKVESTRAWSEVAAAYGLIGGSAAAEEG
+RRKAQDAKKEYGPVVERGARKAGEAVAHQYGLLAPAVAKGVD----TVQDFLEHLQAQAQ
+DAGHEVQQQFAAARKDAEKAAKKGRRRGGRKAKQLRRDGRQAAKGLRKDAKKAAKGARKD
+AQRSAALFSDRAGQAKDAAAAGGLTLAGLLATGLSALQEQGGKVAPQVQARLADAGDYAQ
+RRKEEVLPVAAARLADGAAHARKTAHDVEVPDALEQALIKLTGDKAIVKRLRQGAEQYAG
+AAEKDLNRAAGRRASRSGGRAWIVAGMAAAAAGAGFALWRLTKPVQDPWTAPVPGPITAN
+IPVVEAN---NPYAQQQKVVAEAGSAAAGQGVRVDTATP--------DPVAAANAKVLGV
+QPGQQR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000383.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000383.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1530134433a263a9931eb714520f9f30b8926288
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000383.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00386
+MVLDGPVNTTIDTPSPDQPVSGQGTPAYARVPASYYDIFVGVFVALLILSGVTAAKLFYG
+PTVPVFSDVFYGGGPLIFDGGAFLFPFAYIIGDILAEVYGWRRARRAILLGFAMLVLAAL
+TYTVVSWTTPVEGFEVWDQALAPMLRITVAGFVAFLAGSLINATIVVRLKERMRERHVAF
+RLILSTIVGQFFDTLIFCTIAFAGTITLLELANYTFTGFLYKTLVEILIVPITLLVIRRV
+KASEPTYR-----------PASSPARAAADAA
+>KBS0714_MOLHKGIG_00011
+------MNTTIDTPSPDRPASGQGTPAYARVPASYYDIFVGVFIALLILSGVTAAKLFYG
+PTVPVISDLFYDGGPLIFDGGAFLFPFAYIVGDILAEVYGWRRARRAIVLGFAMLVLAAL
+TYTVVSWTTPVEGFEVWDQALAPMLRITVAGVVAFLVGSLLNASIVVRLKERMKERHVAF
+RLILSTVVGQFFDTLIFCTIAYAGTISLLELANYTVTGFAYKTLVEILIVPVTLLVIRAL
+KRREPTYRAPGFEIHRDDDPALAPAASR----
+>KD337_NAFOICDF_02181
+------MNTT--PASRSEPTSGQGAAASAAAPHSHYDIFVGVFVALLILSGVTAAKLFYG
+PTVPGVSDVFYGGGPLIFDGGAFLFPLSYVVGDILAEVYGLRRARRAIYIGFAMLVVAAL
+TYRLVALTTPVEGFEAWDQALAPTLRITLAGLAGYIVGSLLNATVVARMKARMAERAVAW
+RLIASTLVGEFFDTLIFCLVAFAGTITLADLANYTVTGYVYKCLVEICIVPVTLLVIRWL
+KRHEPTYRA-----QPTPAPVSAPTA------
+>SA211_MHAAABBN_02029
+------MNTTTHAPSPDRPASGQGTPAYARVPASYYDIFVGVFIALLILSGVTAAKLFYG
+PTVPVISDLFYDGGPLIFDGGAFLFPFAYIVGDILAEVYGWRRARRAIVLGFAMLVLAAL
+TYTVVSWTTPVEGFEVWDQALAPMLRITVAGFVAFLVGSLLNASIVVRLKERMKERHVAF
+RLILSTVVGQFFDTLIFCTIAYAGTISLLELANYTVTGFAYKTLVEILIVPVTLLVIRAL
+KRREPTYRAPGFEIHRDDDPALAPAASR----
+>TT9_LFPAFLNI_00011
+------MNTTIDTPSPDRPASGQGTPAYARVPASYYDIFVGVFIALLILSGVTAAKLFYG
+PTVPVISDLFYDGGPLIFDGGAFLFPFAYIVGDILAEVYGWRRARRAIVLGFAMLVLAAL
+TYTVVSWTTPVEGFEVWDQALAPMLRITVAGFVAFLVGSLLNASIVVRLKERMRERHVAF
+RLILSTVVGQFFDTLIFCTIAYAGTISLLELANYTVTGFAYKTLVEILIVPVTLLVIRAL
+KRREPTYRAPGFEIHRDDDPALAPAASR----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000388.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000388.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3c12c382f94affd9446740fda3c1d62cbaa67627
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000388.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00417
+MSTSASSRPGKAAGAGRTAE-RSGRPVRKASG-SSQENLVRAVPKAKVRRARLMLNRVDP
+WSVLKLAFLLSVALGILTVVAAVALYSLSDALGLFQRINDALGTVLGAESGRYTVQSLAP
+LSTVVSLATVLAVLNVILLTALATVAALLYNVCAALVGGVGVTLTDD
+>KBS0714_MOLHKGIG_00007
+MSTSASSRPGQGRSTGKAAEPRSGRPVRKASG-SSQEDLVRAVPKAKVRRARLVLTRVDP
+WSVLKLAFLLSVALGILTVVAAVALYSLSDVLGIFDRVNDVIGTVLGSEAGRYTVASLAP
+LSTVTSLATVLAVVNVILLTALATVAALLYNLCASLVGGIGVTLTDD
+>KD337_NAFOICDF_00369
+MSTSASSRPAGAKGAS------ASRPARRSSSRDSQEDLVRAVPKAKVRRARLQLTKVDP
+WSVLKLAFLLSVALGIILVVATVGFYTLAELTGVFGKINDVLGTVLGTESGTYTVENLAP
+LSTVVSLATVVAVLNVILLTALGVVGALLYNVCASLVGGVGVTLADD
+>SA211_MHAAABBN_02012
+MSTSASSRPGQGRSTGKAAEPRSGRPVRKASG-SSQEDLVRAVPKAKVRRARLVLTRVDP
+WSVLKLAFLLSVALGILTVVAAVALYSLSDVLGIFDRVNDVIGTVLGSEAGRYTVASLAP
+LSTVTSLATVLAVVNVILLTALATVAALLYNLCASLVGGLGVTLTDD
+>TT9_LFPAFLNI_00007
+MSTSASSRPGQGRSTGKAAEPRSGRPVRKASG-SSQEDLVRAVPKAKVRRARLVLTRVDP
+WSVLKLAFLLSVALGILTVVAAVALYSLSDVLGIFDRVNDVIGTVLGSEAGRYTVASLAP
+LSTVTSLATVLAVVNVILLTALATVAALLYNLCASLVGGLGVTLTDD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000392.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000392.fa
new file mode 100644
index 0000000000000000000000000000000000000000..513e94218a8796fe64ca4a6775502d0336273ec7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000392.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00421
+MHLSHLTVADFRSYRWADLELGPGSTVLLGANGVGKTNLVEAVGYLGSHQSHRVSSDAQL
+VRFGQDRARIAGRVHRGSRTVALELEILPGRSNRVAINRGAPVRAKEGLGILRTVVFAPE
+DLNLVTGEPGGRRRLLDQLMVQLRPALGEAAADFERVLRQRNALLKSARKARRWGPEEEA
+TLEVWDEHLCAAGARLLHGRLHVLRLLAHPLREMYGALTNGSKAATYAYESTVPLARGTH
+AEVPPVAELAADMRRALVAQRDEEQARALTLVGPHRDELALFLGPAPARGYASHGETWSL
+ALALRLAAYDVLVADDPDPDGRPVLILDDVFAELDAARRRRLAALVGRAEQVIVTAAALE
+DVPAELAGPRVLIRQDAEGSEAVPAAAPVEGDIRAPRGAGGTEGEAPGARRGRRRRRRHA
+PADPAEDDPDG----
+>KBS0714_MOLHKGIG_00003
+MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL
+VRFGRDRARIAGRVHRGSRAVALELEILPGRSNRVAINRGAPVRAKEGLGILRTVVFAPE
+DLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSSRGSRRWGPEEDA
+TLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLARGTH
+AEVPAVADLAVDMRRTLETQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL
+ALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALVHRAEQVIVTAAALE
+DVPEELTAHRVLIRQDAEGSEAVAAAAPVEGDIREPRREGGADG----------------
+---------------
+>KD337_NAFOICDF_00374
+MHLSHLTVQDFRSYRWADLELSPGSTVLLGANGVGKTNLVEAIGYLGSHQSHRVSQDAQL
+VRFGQDRARIAGRVHRGARSVALELEILPGRSNRVAINRGAPVRAKEGLGILRTVVFAPE
+DLGLVTQDPGGRRRFLDQLMVQLRPALGQAAADYERVLRQRNALLKSARKARRWGAEEDA
+TLAVWDEHLCAAGARLLHGRLHVLRLLAHPLQEDYAALTNGSKTATYSYESTVPAARGTH
+VQAPPVAELAASMHAALVEQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL
+ALALRLAAYDVLVADDSDPEGRPVLILDDVFAELDAARRERLAGLVGRAEQVIVTAAALA
+DIPASLAGHRVLIRQDAEGSEAVAAAEPVEGDIRAPR-PGAAPG---------------A
+AASEAEEPEDGDARA
+>SA211_MHAAABBN_02008
+MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL
+VRFGRDRARIAGRVHRGSRAVALELEILPGRSNRVAINRGAPVRAKEGLGILRTVVFAPE
+DLGLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKAGRGSRRWGPEEDA
+TLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLARGTH
+AEVPAVADLAVDMRRTLETQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL
+ALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALVHRAEQVIVTAAALE
+DVPEELTAHRVLIRQDAEGSEAVAAAAPVEGDIREPRREGGADG----------------
+---------------
+>TT9_LFPAFLNI_00003
+MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL
+VRFGRDRARIAGRVHRGSRTVALELEILPGRSNRVAINRGAPVRAKEGLGILRTVVFAPE
+DLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSSRGSRRWGPEEDA
+TLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLARGTH
+AEVPAVADLAADMHRTLEAQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL
+ALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALVHRAEQVIVTAAALE
+DVPEELTAHRVLIRQDAEGSEAVAAAAPVEGDIREPRREGGADG----------------
+---------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000393.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000393.fa
new file mode 100644
index 0000000000000000000000000000000000000000..47b71cc130283b704fded9094cceba1f1370f6cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000393.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00422
+-----------------------------MPVLSGLLITAEAGVVSIASFDYETSARLEI
+EADVETDGQVLVSGRLLNDIVRALPHAQVTVELDGGKVVVTCRSSRFALATMPVGDYPAL
+PELPTPAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTMTFLATDRYRLAMK
+EIRWTPADPSISTSLLVKARTLTEVAKSLGAGGDLEILLGEGTDLVGFSSGGRRTTSVLV
+DGEYPKIRSLFPETSPIQAVVDTAALVEASRRVALVAERNTALRMVFTDGQVTLDAGTGD
+DASANESVPCTLEGEDITVAFNPSYLSEGLAVVDQPQVRFAFTSAPKPALLTGVNQEDGV
+VSDYRYLVMPVRIA
+>KBS0714_MOLHKGIG_00002
+MQLVKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEI
+EADVETAGQVLVSGRLLNDIVRSLPQAQVTVELDGGKVLVTCRSSRFALATMPVGDYPAL
+PELPAPAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTMTFLATDRYRLAMK
+EIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTSVLV
+DGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAERNTALRMVFTDGQVTLDAGTGD
+DASANESVPCTLEGEDITVAFNPSYLSEGLAVVDQPQVRFAFTSAPKPALLTGVNQEDGV
+VSDYRYLVMPVRIA
+>KD337_NAFOICDF_00375
+---MKFTVARDILSDAVSWAARSLSPRPPVPVLSGLLVTAEAGLVSIASFDYETSARLQI
+EADVEDEGQVLVSGRLLNDIVRALPNAPVTLELDGGKVLVTCRSSRFQLATMPVADYPAL
+PELPEPAGTVDGAAFAHAVNQVTVAASKDDTLPILTAVKVEIEGDTMTFLATDRYRLAMT
+EIRWNPADPAISTSLLIKARTLTEVAKSLGGGGRLEIMFGSSHDLVGFSSGGRRTTSVLV
+DGEYPKIRSLFPETSPIQAAVDTEELIAASRRVALVAERNTALRMVFTDGQVTLDAGTGD
+DATANESVPCTLEGEEITVAFNPAYLSEGLAVVDQPQVRFSFTAAPKPALLTGVHEEDGT
+VSDHRYLVMPVRLT
+>SA211_MHAAABBN_02007
+MQLVKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEI
+EADVETAGQVLVSGRLLNDIVRSLPQAQVTVELDGGKVLVTCRSSRFALATMPVGDYPAL
+PELPAPAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTMTFLATDRYRLAMK
+EIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTSVLV
+DGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAERNTALRMVFTDGQVTLDAGTGD
+DASANESVPCTLEGEDITVAFNPSYLSEGLAVVDQPQVRFAFTSAPKPALLTGVNQEDGV
+VSDYRYLVMPVRIA
+>TT9_LFPAFLNI_00002
+MQLVKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEI
+EADVETAGQVLVSGRLLNDIVRSLPQAQVTVELDGGKVLVTCRSSRFALATMPVGDYPAL
+PELPAPAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTMTFLATDRYRLAMK
+EIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTSVLV
+DGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAERNTALRMVFTDGQVTLDAGTGD
+DASANESVPCTLEGEDITVAFNPSYLSEGLAVVDQPQVRFAFTSAPKPALLTGVNQEDGV
+VSDYRYLVMPVRIA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000396.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000396.fa
new file mode 100644
index 0000000000000000000000000000000000000000..03355b60a05d6bd77b31f2e135eb945e6fb6fb0e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000396.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00425
+MLPRDRRVRTPAEFRHLGRTGTRAGRRTVVVSVATDPDHTRSTSPSVP-RPRAGFVVSKA
+VGNAVTRNRVKRRLRAVVAEQMRAAPLRELPVLVQVRALPPAAEADHALLRRETVGALAK
+ALRPHLPAVPRDEA
+>KBS0714_MOLHKGIG_02311
+MLPRDRRVRTPAEFRHLGRTGTRAGRRTVVVSVATDPDQTRSTPPSAP-RPRAGFVVSKA
+VGNAVTRNRVRRRLRAVVADQMRTAPLRELPVLVQVRALPAAAEADFALLRRETVGALGK
+ALKPHLPAASE-HA
+>KD337_NAFOICDF_00378
+MLPRDRRVRTPEEFRRIRRTGSRAGRSTVVVSVAADTDPARPGATSQPRRPRAGFVVSKA
+VGNSVVRHRVTRRLRALLRAELDSPALRDRALLIQVKALPAAVDADHATLRRDVHGALGA
+AVR-KLDQADR-SR
+>SA211_MHAAABBN_02004
+MLPRDRRVRTPAEFRHLGRTGTRAGRRTVVVSVATDPDQTRSTSPSAP-RPRAGFVVSKA
+VGNAVTRNRVKRRLRAVVADQMRLPPLRDLPVLVQVRALPAAAEADYALLRRETVGALGK
+ALKPHLPAASE-HA
+>TT9_LFPAFLNI_02252
+MLPRDRRVRTPAEFRHLGRTGTRAGRRTVVVSVATDPDQTRSTSPSAP-RPRAGFVVSKA
+VGNAVTRNRVKRRLRAVVADQMRLPPLRDLPVLVQVRALPAAAEADYALLRRETVGALGK
+ALKPHLPAASE-HA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000398.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000398.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3aefbf142a65ce86f639d6bdd7b46f1c7e4969bb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000398.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00427
+MFEAILAPFRWLMSWLLGAFHTVLEFAGMPADSGWTWALSILLLVVLIRTLLIPLFVKQI
+KAQRAMQAIQPELQKLQAKYKGKKDQLSRQAMAMEQQALMKEHKANPFAACLPLLIQMPF
+FFALYQVLIGARGASERGESMDALSADQIRSFEGSMIFGARMSDTFLNSFGDPGSAPLII
+TAIVLIVLMSGSMFYMQKMLMTKNMTQQALSGPMMQTQQIMLYAMPLIFGIGGINFPIGV
+LLYWTYSNFWAVGQQWWIIRNNPTPGSLAEQELNERRAAKGLPPVGQKVTDSKAEPSSAH
+TQAAGGGTATLNGEPVRDSGQRVQPQRKNRRRK
+>KBS0714_MOLHKGIG_02309
+MFEAILAPFRWLMSWLLGAFHTVLEFAGMPADSGWTWALSILLLVVLIRTLLIPLFVKQI
+KAQRAMQAIQPELQKLQAKYKGKKDQLSRQAMAMEQQALMKEHKANPFAACLPLLIQMPF
+FFALYQVLIGARGASERGESMDALSADQIRSFEGSTIFGARMSDTFLNSFGDPGSAPVII
+TAIVLIVLMSGSMFYMQKMLMTKNMTQQALSGPMMQTQQIMLYAMPLIFGIGGINFPIGV
+LLYWTYSNFWAVGQQWWIIRNNPTPGSLAEKELNERRAAKGLPPVGQKVTDSKAEPSSAH
+TQAAGGG-AVLNGEVVRQSGQRVQPQRKNRRRK
+>KD337_NAFOICDF_00380
+MFDAILAPFRWIMSWLLGAFHTVLDTIGLPADSGWTWALAILLLVILIRTLLIPLFVKQI
+NAQRAMQTMQPELQKLQAKYKGKKDQLSRQAMALEQQALMREHKANPFAACLPLLIQMPF
+FFALYQVLVGARGAAERGESMDALSAETIRSFESSQIFGARMSDTLMGSIGQPGGAAVVV
+VAIVLILLMTGSMFFMQKMLMTKNMTQTALEGPMMQTQQIMLYAMPLIFGIGGINFPIGV
+LLYWTYSNFWAVGQQWWIIRHNPTPGSLAEQELNERRAAKGLPPVGKKVASSEAKPGSAH
+TEAAQG--AVVNGEVLREGGQRVQPQRKNRRKK
+>SA211_MHAAABBN_02002
+MFEAILSPFRWLMSWLLGAFHSILEFAGLPADSGWTWALSILLLVVLIRTLLIPLFVKQI
+KAQRAMQAIQPELQKLQAKYKGKKDQLSRQAMAMEQQALMKEHKANPFAACLPLLIQMPF
+FFALYQVLIGARGAAERGEAMDALSADQIRSFEGSTIFGARMSDTFMNSLGAPGSGPVIV
+TAIVLILLMSGSMFFMQKMLMTKNMTQQALSGPMMQTQQIMLYAMPLIFGIGGINFPIGV
+LLYWTYSNFWAVGQQWWIIRNNPTPGSLAEKELNERRAAKGLPPVGQKVSNAEATPSSAH
+TQAGRGG-AVLNGEVVRQSGQRVQPQRKNRRRK
+>TT9_LFPAFLNI_02250
+MFEAILSPFRWLMSWLLGAFHSILEFAGLPVDSGWTWALSILLLVVLIRTLLIPLFVKQI
+KAQRAMQAIQPELQKLQAKYKGKKDQLSRQAMAMEQQALMKEHKANPFAACLPLLIQMPF
+FFALYQVLIGARGAAERGEAMDALSADQIRSFEGSTIFGARMSDTFMNSLGAPGSTPVIV
+TAIVLILLMSGSMFFMQKMLMTKNMTQQALSGPMMQTQQIMLYAMPLIFGIGGINFPIGV
+LLYWTYSNFWAVGQQWWIIRNNPTPGSLAEKELNERRAAKGLPPVGQKVSNAEATPSSAH
+TQAGRGG-AVLNGEVVRQSGQRVQPQRKNRRRK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000401.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000401.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c3fe6f13fc27b364ffcaf43a3b858b848ea0aefb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000401.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00430
+MAQEQESRGGAWRALRQKWSGRSAEQGAGEAEESSRLKARRLARPERTRVFTTSNQKGGV
+GKTTTTVNLAAALARAGMRVMVIDIDPQGNASTALNIPHTGDVASVYDVLLGEMEMHDVV
+QDAPDVDGLQVVPATIDLAGAEIELVSLVAREQRLSRALEAYTAWREENGQERLDYVFID
+CPPSLGLLTVNAFVAAEEVLIPIQAEYYALEGLSQLLKNVQMIQKHLNPKLQVSTILLTM
+FDARTNLAVQVAEEVRAHFPEQLLGTAIPRNVRISEAPSYQQTVLTYDPTSAGAVAYREA
+AAEIAGRGAPAA-KG
+>KBS0714_MOLHKGIG_02306
+MAQEQESRGGAWRALRQKWTGRTAEKGGADAEEPARLQRRRLTRPDRTRVFTTSNQKGGV
+GKTTTTVNLAAALARAGMRVMVVDIDPQGNASTALNIPHTGDVASVYDVLLGEMEIQDVV
+QDAPDVDGLQVVPATIDLAGAEIELVSLVAREQRLSRALEAYTAWRAEDGQERLDYVFID
+CPPSLGLLTVNAFVAAQEVLIPIQAEYYALEGLSQLLKNVQMIQKHLNPRLQVSTILLTM
+FDARTNLAVQVAEEVRTHFPEQLLNTAIPRNVRISEAPSYQQTVLTYDPASAGAVAYREA
+AAEIAGRGAPSV-KG
+>KD337_NAFOICDF_00383
+MAKDQDSRGGTWKALKQRWSGRASDK--ASPEEAARLKARRLPVPDRTRVFTTSNQKGGV
+GKTTTTVNLAAALARAGMRVLVIDIDPQGNASTALNVPHAGDVASVYDVLLDEMEIHEAV
+QDAPDVDGLQVVPATIDLAGAEIELVSMVAREQRLARALDRYMAWRADQGQERLDYVFID
+CPPSLGLLTVNAFVAAEEVLIPIQAEYYALEGLSQLLKNVQMIQKHLNPKLQVSTILLTM
+FDARMNLAVQVAEEVKAHFPEQLLETAIPRNVRISEAPSYQQTVVTYDPASAGAVAYREA
+AAEIARRGAPQA-R-
+>SA211_MHAAABBN_01999
+MAQEQESRGGAWRALRQKWTGRTAEKGGADVEEPARLQRRRLTRPDRTRVFTTSNQKGGV
+GKTTTTVNLAAALARAGMRVMVVDIDPQGNASTALNIPHTGDVASVYDVLLGEMEIQDVV
+QDAPDVDGLQVVPATIDLAGAEIELVSLVAREQRLSRALEAYTAWREEDGQERLDYVFID
+CPPSLGLLTVNAFVAAEEVLIPIQAEYYALEGLSQLLKNVQMIQKHLNPRLQVSTILLTM
+FDARTNLAVQVAEEVRTHFPEQLLNTAIPRNVRISEAPSYQQTVLTYDPASAGAVAYREA
+AAEIAGRGAPTALKS
+>TT9_LFPAFLNI_02247
+MAQEQESRGGAWRALRQKWTGRTAEKGGADAEEPARLQRRRLTRPDRTRVFTTSNQKGGV
+GKTTTTVNLAAALARAGMRVMVVDIDPQGNASTALNIPHTGDVASVYDVLLGEMEIQDVV
+QDAPDVDGLQVVPATIDLAGAEIELVSLVAREQRLSRALEAYTAWREEDGQERLDYVFID
+CPPSLGLLTVNAFVAAEEVLIPIQAEYYALEGLSQLLKNVQMIQKHLNPRLQVSTILLTM
+FDARTNLAVQVAEEVRTHFPEQLLNTAIPRNVRISEAPSYQQTVLTYDPASAGAVAYREA
+AAEIAGRGAPAV-KG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000405.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000405.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1a15258f26f89a4ce34226c5cd93586abf271893
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000405.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_00437
+MDLTTATLALPAGFPADAALPAVVVELGRRFEAAGHELSLVGGPVRDLFLGRVSGDLDFT
+TDAGPDAAEAVGAGWADATWDVGRRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFG
+DSLEEDLLRRDFTVNAMALRLPGLELVDPYGGVQDLAAGVLRTPGAPEDSFSDDPLRMLR
+AARFASQLGFTVADEVEAAMTAMAERIGIISAERVREELVKLVCGAHPRRGLDLLVRTGL
+AEHVLPELPALQLESDEHHRHKDVYAHSLTVLEQAMELEAEYSPSAPDPVLRLAALLHDV
+GKPATRRFEKGGAVSFRHHETVGAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGEA
+GWTDSAVRRYAHDAGDLLPRLHALTRSDVTTRNKRKAERLAHAYDDLERRIAEIAEQEEL
+AAVRPDLDGEQIMALLGIRPGPVVGRAYRHLLEWRLDEGPHEPAEAEAELRRWWAEQPEA
+A--------EG
+>KBS0714_MOLHKGIG_02299
+MDLTTATHALPPGFPADATLPAVVVELGRRFEAAGHELSLVGGPVRDLFLGRPSPDLDFT
+TDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFG
+DSLEDDLLRRDFTVNAMALRLPALELVDPFGGMRDLHAGVLRTPGTPEDSFSDDPLRMMR
+AARFASQLGFAVAPEVEQAMTAMAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGL
+ADHVLPELPALQLESDEHHRHKDVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDV
+GKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDA
+GWTDSAVRRYAHDAGDLLPRLHALTRSDVTTRNRRKAERLAHAYDDLERRIAEITEAEEL
+AAVRPDLDGQQIMALLGIRPGPVVGRAYTHLLEWRLDEGPHEPAEAEAELRRWWAEQPEA
+Q--------QD
+>KD337_NAFOICDF_00390
+MEPRTDTRPLPAGFPADAALPAVVVELGRRFEAAGHELSLVGGPVRDLLLGRPVVDLDFT
+TDADPDATERIGAGWAEAAWDVGRHFGTIGFQKGGWQLEVTTYRAEQYDPTSRKPQVAFG
+DSLEDDLLRRDFTVNAMALRLPAMELVDPHGGVRDLAAGVLRTPGAPEDSFSDDPLRMMR
+AARFASQLGFGVADEVEAAMTDMAERIGIISAERVRDELVKLVRGDRPRAGLDLLVRTGL
+AQIVLPELPALQLETDEHHRHKDVYAHSLQVLEQAMGEEERYSPERPDVVLRLAALLHDV
+GKPATRRFEPSGAVSFRHHENVGAKLVRRRLKALRFDNDTIKAVARLVELHMRFYGYGEA
+GWTDSAVRRYVHDAGDLLPRLHALTRSDVTTRNRRKAERLAHAYDDLERRIEEISAAEEL
+AAVRPDLDGQQIMALLGIRPGPVVGRAYAHLLEWRLDEGPHEQAAAEAELRRWWAEQPEA
+AGASSGGGARD
+>SA211_MHAAABBN_01992
+MDLTTATHALPPGFPADATLPAVVVELGRRFEAAGHELSLVGGPVRDLFLGRTSPDLDFT
+TDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFG
+DSLEDDLLRRDFTVNAMALRLPALELVDPFGGMRDLHAGVLRTPGTPEDSFSDDPLRMMR
+AARFASQLGFAVAPEVEEAMAAMAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGL
+ADHVLPELPALQLESDEHHRHKDVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDV
+GKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDA
+GWTDSAVRRYAHDAGDLLPRLHALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEEL
+AAVRPDLDGQQIMALLGIRPGPVVGRAYNHLLEWRLDEGPHEQAEAEAELRRWWAEQPEA
+Q--------QD
+>TT9_LFPAFLNI_02240
+MDLTTATHALPPGFPADATLPAVVVELGRRFEAAGHELSLVGGPVRDLFLGRPSPDLDFT
+TDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFG
+DSLEDDLLRRDFTVNAMALRLPALELVDPFGGMRDLHAGVLRTPGTPEDSFSDDPLRMMR
+AARFASQLGFAVAPEVEQAMTAMAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGL
+ADHVLPELPALQLESDEHHRHKDVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDV
+GKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDA
+GWTDSAVRRYAHDAGDLLPRLHALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEEL
+AAVRPDLDGQQIMALLGIRPGPVVGRAYTHLLEWRLDEGPHEPAEAEAELRRWWAEQPEA
+Q--------QD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000406.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000406.fa
new file mode 100644
index 0000000000000000000000000000000000000000..aeac473b2b49b83e1d1c7585bcd852f6751ec507
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000406.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00440
+MATTPIRVAIAGVGNCATSLIQGVEYYRDAKATDTVPGLMHVQFGDYHVSDLQFVAAFDV
+DAKKVGLDLSEAILASENNTIKLADVPHADVTVQRGPTLDGLGKYYAETIEESDAEPVDV
+AQALRDAQVDVLVCYLPVGSQLATEHYAQTAIDAGVAFVNALPVFIAGTPEWADKFTAAG
+VPIVGDDIKSQIGATITHRVMAKLFEDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKI
+SKTQAVTSNTSAKLGEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWD
+SPNSAGVIIDAVRAAKIALDRGTGGPILSASSYFMKSPPVQHNDDEARELVEAFIRGDIE
+R
+>KBS0714_MOLHKGIG_02296
+MATNPIRVAIAGVGNCATSLIQGVEYYREAKATDTVPGLMHVQFGDYHVSDLEFVAAFDV
+DAKKVGLDLSEAITASENNTIKIADVPHADVTVQRGPTLDGLGKYYAETIEESDVEPVDV
+AQALRDAKVDVLVCYLPVGSQRATEHYAQAAIDAGVAFVNALPVFIAGTPEWAEKFTAAG
+VPIVGDDIKSQIGATITHRVMAKLFQDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKI
+SKTQAVTSNTSAQLGEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWD
+SPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPVQHNDDAAHELVEAFIRGDIE
+R
+>KD337_NAFOICDF_00393
+MAENPIRVAIAGVGNCATSLIQGVEYYKDAQASDTVPGLMHVQFGDYHVSDLEFVAAFDV
+DAKKVGLDLSEAILASENNTIKISDVPATGVTVQRGPTLDGLGKYYRETIEESSAEPVDV
+VQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAKVAFVNALPVFIAGTQEWADKFTEAG
+VPIVGDDIKSQIGATITHRVMAKLFEDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKI
+SKTQAVTSNTSAELAEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWD
+SPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPVQHADDEAHELVEAFIRGDIE
+R
+>SA211_MHAAABBN_01989
+MATNPIRVAIAGVGNCATSLIQGVEYYREAKATDTVPGLMHVQFGVYHVSDLEFVAAFDV
+DAKKVGLDLSEAITASENNTIKIADVPHADVTVQRGPTLDGLGKYYAETIEESEAEPVDV
+AQALRDAEVDVLVCYLPVGSQRATEHYAQAAIDAGVAFVNALPVFIAGTPEWAEKFTAAG
+VPIVGDDIKSQIGATITHRVMAKLFEDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKI
+SKTQAVTSNTSAQLGEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWD
+SPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPVQHNDDAAHELVEAFIRGDIE
+R
+>TT9_LFPAFLNI_02237
+MATNPIRVAIAGVGNCATSLIQGVEYYREAKATDTVPGLMHVQFGDYHVSDLEFVAAFDV
+DAKKVGLDLSEAITASENNTIKIADVPHADVTVQRGPTLDGLGKYYAETIEESEAEPVDV
+AQALRDAKVDVLVCYLPVGSQRATEHYAQAAIDAGVAFVNALPVFIAGTPEWAEKFTAAG
+VPIVGDDIKSQIGATITHRVMAKLFEDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKI
+SKTQAVTSNTSAQLGEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWD
+SPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPVQHNDDAAHELVEAFIRGDIE
+R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000409.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000409.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1104a55c272c0fb655e4384597d68c34687fd052
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000409.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00443
+MTAVTRDT------APAPEMSAHVQDLAAFVTASPSSYHAAAEVARRLVAVGFTCLDEAADFPAAPGGYVVVRDGAALAW
+VVPTGAGS---DVSDGAGAAGGSGAGAA---VPVFRVLGAHTDSPGFKLKPNPATVTADGWVQAGVEVYGGPLLNSWLDR
+ELRFAGRLALDDGTQVLAATGPVGRIPQLAIHLDREVNDGLKLQRQRHTNPVVGALAPRGEGAGEAVADVSEGVDGRSAP
+LEQAAGAGAGVGAGAGEGAGAREGDGAGLEA----RAPGDVLSALAAAAGVDPAAVRGHDVMVADAQAPGLFGLAGEFFA
+SGRLDNLSSVHAGLVALEELARANGGASGAIAYAGTVAEGVAGEAAGAPVIPVLAAFDHEELGSASRSGAAGPLLEEVMG
+RVLEALGVAGQGRARAIAGSWLLSADAGHLVHPNYAERHDPVNHPRVNHGPLLKINANQRYATDAGGEAAFARWCGVAGV
+PFQEFVSNNDMPCGSTIGPISATRLGIRTVDVGLGLLSMHSAREMCGVRDVEHLTAAVREFFRGV
+>KBS0714_MOLHKGIG_02293
+MTPVTRDT--------VAELHAHLRDLAEFVTASPSSYHAAEEVARRLEAVGFTRLDETADFPAAPGGYVVVRDGAAVAW
+IVPMGARALGRHEGAEARAAGPDEAGQSAGVVPVFRVLGAHTDSPGFKLKPNPATVTADGWVQAGVEVYGGPLLNSWLDR
+ELRFAGRLALDDGTQVLAATGPVGRIPQLAIHLDREVNEGLTLKRQRHTNPVVGALVPRGEGAGEAEAD-----------
+---------------------------GLAA----RVPGDVLTALAAAAGVDPAAVRGHDVVVADAQAPGLFGLAGEFFA
+SGRLDNLSSVHAGLVALEELAREHGGAEGAIAYEGTVAGGVAGVAAGAPVIPLLAAFDHEELGSASRSGAAGPLLEEVMG
+RVLEALGVAGQGRARAIAGSWLLSADAGHLVHPNYAERHDPVNHPRVNHGPLLKINANQRYATDAGGEAAFARWCGVAGV
+PFQEFVSNNDVPCGSTIGPISATRLGIRTVDVGLGLLSMHSAREMCGVRDVEHLTAAVREFFRGV
+>KD337_NAFOICDF_00396
+MSTVTSESTVTAAVPGAPALSAHLQDLAAFVQASPSSFHAAAEVARRLEAVGFTRVDPAQDLPAAPGGYVSVTDGAVLAW
+ILPEALAE------------------RAADAVPVFRLLGAHTDSPGFKLKPQHLTVTADGWVQAGVEVYGGPLLNSWLDR
+ELRFAGRLALADGRQVLAATGPVGRIPQLAIHLDRSANDDLTLGRQRHTQPIVAAVAGAPDAAGTDAAD-----------
+---------------------------GASADPVVRLTGDILELLAAQAGVDPAEVRGADVVVADAQQGGAFGANGEFFA
+CGRLDNLSSVHAGLRALESLAADADRAGRGV----VVAEGVAGEAAGAPVIPVLAAFDHEEVGSATRTGAGGPLLEELMG
+RLLSACGVTGQGAARSRAGSWLLSADAGHLVHPNYTERHDPVNHPRVNHGPLLKINANQRYSTDAAGEAAFARWCAAAGV
+PFQRFVSNNDVPCGSTIGPISATRLGVRTVDVGIGLLSMHSAREMCGADDPARLAAVARAFFAGV
+>SA211_MHAAABBN_01986
+MTPVTRDT--------AAELPAHLRDLAEFVTASPSSYHAAEEVARRLEAVGFTRLDETADFPAAPGGYVVVRDGAAVAW
+IVPMGAGALGRHEGAEARAAGPDEAGPSAGVVPVFRVLGAHTDSPGFKLKPNPATVTADGWVQAGVEVYGGPLLNSWLDR
+ELRFAGRLALDDGTQVLAATGPVGRIPQLAIHLDREVNEGLTLKRQRHTNPVVGALAPRGEGAGEAEAD-----------
+---------------------------GLAA----RVPGDVLTALAAAAGVDPAAVRGHDVVVADAQAPGLFGLAGEFFA
+SGRLDNLSSVHAGLAALEELAREHGGAEGAIAYEGTVAGGVAGEAADAPVIPLLAAFDHEELGSASRSGAAGPLLEEVMG
+RVLEALGVAGQGRARAIAGSWLLSADAGHLVHPNYAERHDPVNHPRVNHGPLLKINANQRYATDAGGEAAFARWCGVAGV
+PFQEFVSNNDVPCGSTIGPISATRLGIRTVDVGLGLLSMHSAREMCGVRDVEHLAAAVREFFRGV
+>TT9_LFPAFLNI_02234
+MTPVTRDT--------AAELPAHLRDLAEFVTASPSSYHAAEEVARRLEAVGFTRLDETADFPAAPGGYVVVRDGAAVAW
+IVPMGAGALGRHEGAEARAAGPDEAGQSAGVVPVFRVLGAHTDSPGFKLKPNPATVTADGWVQAGVEVYGGPLLNSWLDR
+ELRFAGRLALDDGTQVLAATGPVGRIPQLAIHLDREVNEGLTLKRQRHTNPVVGALAPRGEGAGEAEAD-----------
+---------------------------GLAA----RVPGDVLTALAAAAGVDPAAVRGHDVVVADAQAPGLFGLAGEFFA
+SGRLDNLSSVHAGLVALEELAREHGGAEGAIAYEGTVAGGVAGEAAGAPVIPLLAAFDHEELGSASRSGAAGPLLEEVMG
+RVLEALGVAGQGRARAIAGSWLLSADAGHLVHPNYAERHDPVNHPRVNHGPLLKINANQRYATDAGGEAAFARWCGVAGV
+PFQEFVSNNDVPCGSTIGPISATRLGIRTVDVGLGLLSMHSAREMCGVRDVEHLAAAVREFFRGV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000411.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000411.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6c8221aaa58af340c5784b2dc16958f811b29971
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000411.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00445
+MSEHPASP----THVLLLRAVNVGGRNRVPKADLAELAAEAGLADVAVHLNSGNVLGTP-
+-DTGDHVDDVAARLRALLAERLGVDTSVHAAARTELSALVDGLLASDLL--APGETLDSV
+DPKTVHLVLLDTVPHPEAGEALAAVDAGD------DRAVVVGRGVWVRYAGPSHSSHLGL
+PRIERAASGDAPPAQRRVGTARNLATVRVLAGR---------------------------
+--------------------
+>KBS0714_MOLHKGIG_01260
+MS--PAAPRADHTHVLLLRGINVGRSNRVGKDTLIRWAQAAGGEAVTTHLASGNVLFRA-
+-SSDAAAEGVRQGFARRAREEGGLDVPV---VLVDVGTLRRALELHDALPWAGGE-----
+-PKRTQLTVLEDDPAPESAAALAALDHGDGRPAGPDRTALEGRLLWTRCATGVADSPLTP
+ARLDRALGVR--------GTARNLTTVRVLAGLPAGDRPRRTARGASGDVDIRGTPRAGR
+DVTVRSHPCDGVTPSSASLP
+>KD337_NAFOICDF_01525
+MS--RAAPRTDHTHVLLLRGINVGRSNRVSNARLAAWAEAARARDVTTHLASGNVLFRLP
+DADDDAGPAFLRAFRDAALADDGPDVPL---ILTTPAELRGALAMHDRLPWSGGE-----
+-AKLTQLTVLAESPRDGAAEALAGLDHGSGRAAGPDRSALEGRFLWIRSPGRISDSPLTP
+ARLEKALGVT--------GTARNLATVRVLAGMA--------------------------
+--------------------
+>SA211_MHAAABBN_00979
+MS--PAAPRTDHTHVLLLRGINVGRSNRVGKDTLIRWAQAAGGEAVTTHLASGNVLFRA-
+-SSDAAAEGVRQGFARRAREEGGLDVPV---VLVDVGTLRRALELHDALPWAGGE-----
+-PKRTQLTVLEDDPAPEAAAALAALDHGDDRPAGPDRTALEGRLLWMRCAAGVADSPLTP
+ARLDRALGVR--------GTARNLTTVRVLAGLPSED-----------------------
+--------------------
+>TT9_LFPAFLNI_01218
+MS--PAAPRTDHTHVLLLRGINVGRSNRVGKDTLIRWAQAAGGEAVTTHLASGNVLFRA-
+-SSDAAAEGVRQGFARRAREEGGLDVPV---VLVDVGTLRRALELHDALPWAGGE-----
+-PKRTQLTVLEDDPAPEAAAALAALDHGDDRPAGPDRTALEGRLLWMRCAAGVADSPLTP
+ARLDRALGVR--------GTARNLTTVRVLAGLPSED-----------------------
+--------------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000414.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000414.fa
new file mode 100644
index 0000000000000000000000000000000000000000..094e0b23950591a5193a048ceda3d826c0f3f9c4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000414.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00448
+MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQ
+AVKNAREVALLPYAGAGRG
+>KBS0714_MOLHKGIG_02290
+MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQ
+AVKNAREVALLPYAGAGRG
+>KD337_NAFOICDF_00400
+MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQ
+AIKNAREVALLPYAGAGRG
+>SA211_MHAAABBN_01982
+MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQ
+AVKNAREVALLPYAGAGRG
+>TT9_LFPAFLNI_02230
+MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQ
+AVKNAREVALLPYAGAGRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000415.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000415.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9695f1c9dfe40f9d0ee9f6386231febbd5952964
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000415.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00449
+MAKLILTQEVTGLGTSGDVVEVKNGYARNYLLPRGFATVWTKGGEKQVESLQKARAARAV
+ANLEDAQAQAEKLQSATVKLERTAGAEGRLFGAVQAADVAEAIEAAGLGSVDKRAVTLPA
+HIKSVGNHQAQVRLHEDVVAVVDLQVVAAKAKK-
+>KBS0714_MOLHKGIG_02289
+MAKLILTQEVAGLGTSGDVVEVKNGYARNYLLPRGFATVWTKGGEKQVESLQKARAARAV
+ANLEDAQAQAAQLQSATVQLERTAGAEGRLFGAVQTADVAEAIEAAGLGSVDKRSITLPA
+HIKSVGNHEAQVRLHEDVIATVQLQVVAAKAKK-
+>KD337_NAFOICDF_00401
+MAKLILTQEVPGLGIDGDVVEVKNGYARNYLLPRGFATVWTQGGEKQVESLKAARAARAT
+ANLEEAQALAAKLQSATVRIDRKAGAEGRLFGAVQAADVAEAIEAAGLGSVSKRSVTLPN
+HIKTVGNHEAQVRLHDEVTATVALQVVAAKGSKK
+>SA211_MHAAABBN_01981
+MAKLILTQEVAGLGTSGDVVEVKNGYARNYLLPRGFATVWTKGGEKQVESLQKARAARAV
+ANLEDAQAQAAQLQSATVKLERTAGAEGRLFGAVQTADVAEAIEAAGLGSVDKRSITLPA
+HIKSVGNHEAQVRLHEDVIATVQLQVVAAKAKK-
+>TT9_LFPAFLNI_02229
+MAKLILTQEVAGLGTSGDVVEVKNGYARNYLLPRGFATVWTKGGEKQVESLQKARAARAV
+ANLEDAQAQAAQLQSATVKLERTAGAEGRLFGAVQTADVAEAIEAAGLGSVDKRSITLPA
+HIKSVGNHEAQVRLHEDVIATVQLQVVAAKAKK-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000420.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000420.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f35ca6f689376f5f053758945ef3d96509e7af7e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000420.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00461
+MTTPRYVMAIDQGTTSTRAILFDHSGAIVSTGQREHEQIFPRAGWVEHDPVEIWTNTREVIGEALARAEVTRHDVAAVGI
+TNQRETTVVWDRNTGKPVHNAIVWQDTRTDRLCERLAGDVGADRYKERVGLPLATYFSGPKVAWILENVDGAREAAENGD
+LIFGTTDSWLVWNLTGGGAGGRHVTDVTNASRTMLMNLDTLDWNEEICADMGIPMSMLPEIVSSSAEVGTVSGQQLLRET
+PITGILGDQHAATFGQACFEVGQAKNTYGTGNFMLINTGEKPVHSDNGLLTTVAYRIGDQKPVYALEGSIAVTGSLIQWL
+RDNLGMIGSAPEVETLAASVEDNGGVYFVPAFSGLFAPHWDATARGAMVGMTRYVNKGHIARAALEATAFQSREVLDAMN
+AD-------SGV--DLTELKVDGGMVANELLMQFQADLLRVPVVRPKVTETTALGAAYAAGLAVGFWSSQDELVANWEED
+KRWEPTMDEEEAERALRLWKKAVERSRDWVDEDVESAQG---------------
+>KBS0714_MOLHKGIG_02270
+MTTPRYVMAIDQGTTSTRAILFDHSGAIVSTGQREHEQIFPRAGWVEHDPVEIWTNTREVIGEALARAEVTRHDVAAVGI
+TNQRETTVVWDRNTGKPVYNAIVWQDTRTDRLCERLAGDVGADRYKERVGLPLATYFSGPKVAWILENVDGAREAAENGD
+LIFGTTDSWLVWNLTGGGEGGRHVTDVTNASRTMLMNLDTLDWNEEICADMGIPMSMLPEIVSSSAEVGTVSGQQLLRET
+PITGILGDQHAATFGQACFEVGQAKNTYGTGNFMLINTGEEPVHSDNGLLTTVAYRIGDQKPVYALEGSIAVTGSLIQWL
+RDNLGMIASAPEVETLAAGVEDNGGVYFVPAFSGLFAPHWDAAARGVMVGMTRYVNKGHIARAALEATAFQSREVLDAMN
+AD-------SGV--DLTELKVDGGMVANELLMQFQADLLRVPVVRPKVIETTALGAAYAAGLAVGFWASQDELVANWEED
+KRWEPTTDEEEVERTLRLWKKAVERSRDWVDEDVESAQG---------------
+>KD337_NAFOICDF_00494
+MSAPRYVMAIDQGTTSTRAILFDHAGDAVATGQLEHAQHFPRAGWVEHDPLEIWRNTREAIGQALSRADATRDDVAAIGV
+TNQRETAVVWDRTTGRPVHPAIVWQDTRTQHLCERLGGDAGPDRWRERTGLPLATYFAGPKVAWILEHVDGAREAAERGD
+LLFGTTDSWTVWNLTGGVLGGQHVTDVTNASRTLLMDLETLEWDAEIAAEMGIPGGMLPRIVSSSAEVGHAAPTSLLGGV
+PIAGILGDQQAALFGQACFEAGQAKNTYGTGNFLLVNTGARPVRSRHGLLTTVAHRIGDEPPAYALEGSVAVTGSLVQWL
+RDNLGLIRDAAEVEELAAGAPDNGGVFVVPAFSGLFAPHWDPTARGTIVGLTRYADRRHLARAVLEATAFQSREVLDAVL
+ADVAEAEEGAGVVGGLTELKVDGGMVANDLLMQFQADVLGVPVVRPEVTETTALGAAYAAGLAVGFWASTAELAAHWSED
+RRWEPAMDPERAARLLRLWARAVARSRGWIDDDVEALAAETRTAPDATPAGRTP
+>SA211_MHAAABBN_01963
+MTTPRYVMAIDQGTTSTRAILFDHSGAIVSTGQREHEQIFPRAGWVEHDPVEIWTNTREVIGEALARAEVTRHDVAAVGI
+TNQRETTVVWDRNTGKPVYNAIVWQDTRTDHLCERLAGDVGADRYKERVGLPLATYFSGPKVAWILENVDGAREAAENGD
+LIFGTTDSWLVWNLTGGGEGGRHVTDVTNASRTMLMNLDTLDWNEEICADMGIPMSMLPEIVSSSAEVGTVSGQQLLRET
+PITGILGDQHAATFGQACFEVGQAKNTYGTGNFMLINTGEEPVHSDNGLLTTVAYRIGDQKPVYALEGSIAVTGSLIQWL
+RDNLGMIGSAPEVETLAAGVEDNGGVYFVPAFSGLFAPHWDAAARGAMVGMTRYVNKGHIARAALEATAFQSREVLDAMN
+AD-------SGV--DLTELKVDGGMVANELLMQFQADLLRVPVVRPKVIETTALGAAYAAGLAVGFWASQDELVANWEED
+KRWEPTMDEEEVERALRLWKKAVERSRDWVDEDVESAQG---------------
+>TT9_LFPAFLNI_02202
+MTTPRYVMAIDQGTTSTRAILFDHSGAIVSTGQREHEQIFPRAGWVEHDPVEIWTNTREVIGEALARAEVTRHDVAAVGI
+TNQRETTVVWDRNTGKPVYNAIVWQDTRTDHLCERLAGDVGADRYKERVGLPLATYFSGPKVAWILENVDGAREAAENGD
+LIFGTTDSWLVWNLTGGGEGGRHVTDVTNASRTMLMNLDTLDWNEEICADMGIPMSMLPEIVSSSAEVGTVSGQQLLRET
+PITGILGDQHAATFGQACFEVGQAKNTYGTGNFMLINTGEEPVHSDNGLLTTVAYRIGDQKPVYALEGSIAVTGSLIQWL
+RDNLGMIGSAPEVETLAAGVEDNGGVYFVPAFSGLFAPHWDATARGAMVGMTRYVNKGHIARAALEATAFQSREVLDAMN
+AD-------SGV--DLTELKVDGGMVANELLMQFQADLLRVPVVRPKVIETTALGAAYAAGLAVGFWASQDELVANWEED
+KRWEPTMDEEEVERTLRLWKKAVERSRDWVDEDVESAQG---------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000425.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000425.fa
new file mode 100644
index 0000000000000000000000000000000000000000..55300e8697a888ef946438f6a542ab429590bd21
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000425.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00476
+MNGAELADSLAEAWDALLHTPLFGIALTLAVAVLARRLWLAARQTALLTPVLVTIVLVAA
+FLALTGIDYETYMIGGSYLTFLLGPATVALAVPLYRAGPDIRKLLLPIAVGVTVGSLTAM
+VSAVLIVRLMGGDAALAATFAPKSATTPIAMAVADAGGGIVSLAAVLPVLTGVLGAVFAP
+WVLDRLRVRDPRVRGLAIGVSSHGIGTARALAEGPKTGAFSALAMACSGVLTALLAPLVL
+AMTG
+>KBS0714_MOLHKGIG_02255
+MNAAELTDSLAEAWDALLHTPLFGIALTLAVAVLSRRLWLAARQTALLTPVLVTIVLVAA
+FLALTGIDYETYMNGGSYLTFLLGPATVALAVPLYRAGPDIRKLLLPVAVGVTVGSLTAM
+VSAVLIVRAMGGDAALAATFAPKSATTPIAMAVADAGGGIVSLAAVLPVLTGVLGAVLAP
+WVLDRLRVRDPRVRGLAIGVSSHGIGTARALAEGPKTGAFSALAMACSGVLTALLAPLVL
+AMTG
+>KD337_NAFOICDF_00431
+MNAAELTDSLAEAWDALLHTPLFGIALTLAVAVLARRLWLAARQTALLTPVLVTIVLVAA
+FLALTGIDYETYMIGGSYLTFLLGPATVALAVPLYRAGPDIRKLLLPVAVGVTAGSLTAM
+VSAVLIVRVMGGDAALAATFAPKSATTPIAMAVADAGGGIVSLAAVLPVLTGVLGAVLAP
+WVLDRLRVRDPRVRGLAIGVSSHGIGTARALAEGPKTGAFSALAMACSGVLTALLAPLVL
+AMTG
+>SA211_MHAAABBN_01955
+MNAAELTDSLAEAWDALLHTPLFGIALTLAVAVLSRRLWLAARQTALLTPVLVTIVLVAA
+FLALTGIDYETYMIGGSYLTFLLGPATVALAVPLYRAGPDIRKLLLPVAVGVTVGSLTAM
+VSAVLIVRAMGGDAALAATFAPKSATTPIAMAVADAGGGIVSLAAVLPVLTGVLGAVLAP
+WVLDRLRVRDPRVRGLAIGVSSHGIGTARALAEGPKTGAFSALAMACSGVLTALLAPLVL
+AMTG
+>TT9_LFPAFLNI_02186
+MNAAELTDSLAEAWDALLHTPLFGIALTLAVAVLSRRLWLAARQTALLTPVLVTIVLVAA
+FLALTGIDYETYMIGGSYLTFLLGPATVALAVPLYRAGPDIRKLLLPVAVGVTVGSLTAM
+VSAVLIVRAMGGDAALAATFAPKSATTPIAMAVADAGGGIVSLAAVLPVLTGVLGAVLAP
+WVLDRLRVRDPRVRGLAIGVSSHGIGTARALAEGPKTGAFSALAMACSGVLTALLAPLVL
+AMTG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000426.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000426.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e4e65b853f653d0f6078f8d88a95c542719cfec2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000426.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00477
+-----------------MGPSHAATGAAAWLALTHWQSPIAVLHLPAELQLLGAVTTAGA
+AMISDWDHPRATVVHALPPLTEWMSRGIRHVAGGHRRGTHSLVGIAAFTAIATAAASIQV
+PIAGHVYTPGQGVIAAFLAAVAAKALRLLPNRGWRAAWALGILVAGAATVLSDGLWWIPA
+SVAVGVSVHILGDALTNNGVALLWPLSPEPPARLWWWQSSGRFRLPLLGRTGSWREWAFV
+SVVTAFTVVRAVRLVPLAARGVAGLLGAGAPS
+>KBS0714_MOLHKGIG_02254
+M----------------MGPSHAATGAAAWLALTHWQSPIAVLHLPAELQLLGAVTTAGA
+AMISDWDHPRATVVHALPPLTEWLSRGIRHVAGGHRRGTHSLVGVAAFTAIATAAASIQV
+PIAGHVYTPGQGVIAAFLAAVAAKALRLLPNRGWRAAWALGILVAVSATVLSDGLWWIPA
+SVAVGVSVHILGDALTNNGVALLWPLSPEPPARLWWWQSSGRFRLPLLGRTGSWREWALV
+SVVTAFTVVRAVRLVPLAARGVAALF------
+>KD337_NAFOICDF_00432
+MSTPPAALALFLPRGPPAGPR--GCGDAAWLALTHGQSPVGVRHLPAELQLLGAVTTAGA
+AMISDWDYPRA-------------------------------------TAIATAAASIHV
+PIAGHVYTPGQGVIAAFVAAVAAKALRLLPNRGWRAAWPLGILVAVSATVFSDGLRWIPV
+SVAVGVSVHILGDALTNNGVALLWPLSPEPPARLWWWQSSGRFRLPLLGRTGSWREWALV
+SVVTAFTVVRAVRLVPLAARG-AALF------
+>SA211_MHAAABBN_01954
+M----------------MGPSHAATGAAAWLALTHWQSPIAALHLPAELQLLGAVTTAGA
+AMISDWDHPRATVVHALPPLTEWLSRGIRHVAGGHRRGTHSLVGIAAFTAVATAAASIQV
+PIAGHVYTPGQGVIAAFLAAVAAKALRLLPNRGWRAAWALGILVAVSATVLSDGLWWIPA
+SVAVGVSVHILGDALTNNGVALLWPLSPEPPTRLWWWQSSGRFRLPLLGRTGSWREWALV
+SVVTAFTVVRAVRLIPLAARGVAALF------
+>TT9_LFPAFLNI_02185
+M----------------MGPSHAATGAAAWLALTHWQSPIAVLHLPAELQLLGAVTTAGA
+AMISDWDHPRATVVHALPPLTEWLSRGIRHVAGGHRRGTHSLVGIAAFTAIATAAASIQV
+PIAGHVYTPGQGVIAAFLAAVAAKALRLLPNRGWRAAWALGILVAVSATVLSDGLWWIPA
+SVAVGVSVHILGDALTNNGVALLWPLSPEPPARLWWWQSSGRFRLPLLGRTGSWREWALV
+SVVTAFTVVRAVRLLPLAARGVAALF------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000427.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000427.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a4fea81aa561439d08fd1011d7d713e66f4693e3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000427.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00496
+MPSRLHLRPLTVADAEEMSAVLADPALYAHTGGEPPSEELLTQQFRIQTRGESADGSERW
+QNLIVVLEETGEAVGYVQATTPKDGGPTEVAWVIGVPWQGRGLGGEAAAQLVEHLAGQGV
+RELIADIAPGHAASEAVARHIGLEPSDVVVDGEVRWTGTVA--DRER-----
+>KBS0714_MOLHKGIG_02201
+MPHSLSLRPLRVDDAEAMAAVLADPDLYTYTGGTPPGEEELRQRYAILARGRSEDGAEDW
+ANWIVVLEPEGRPVGYVQATIPVDGGPTQIAWLIGTPWQGRGLAKEAAGLLKGELRDRGV
+RRLVADVHPEHTASQRVAQAIGLAPTDEVVDGEVRWAGSVD--DGGGPVTG-
+>KD337_NAFOICDF_01297
+MTPPIHLRPLRPDDADEMVAVLADPALYTFTGGEPPTRGALSGQYAVQARGHSEDRSETW
+LNHLVVLDDTGEAVGYVQATIPVAGGAAEIAWVIGVPWQGRGHATAAARLLLDELARRGV
+SEVVADIHPGHAASAAVARRLGLRPTGHIVDGEQRWEGPVAVVDGAASAPGG
+>SA211_MHAAABBN_01914
+MPHSLSLRPLRVDDAEAMAAVLADPDLYTYTGGTPPGEEELRQRYAILARGRSEDGAEDW
+ANWIVVLEPEGRPVGYVQATIPVDGGPTQIAWLIGTPWQGRGLAKEAAGLLKGELRDRGV
+RRLVADVHPEHTASQRVAQAIGLAPTDEVVDGEVRWAGSVD--DGGGPVTG-
+>TT9_LFPAFLNI_02145
+MPHSLSLRPLRVDDAEAMAAVLADPDLYTYTGGTPPGEEELRQRYAILARGRSEDGAEDW
+ANWIVVLEPEGRPVGYVQATIPVDGGPTQIAWLIGTPWQGRGLAKEAAGLLKGELRDRGV
+RRLVADVHPEHTASQRVAQAIGLAPTDEVVDGEVRWAGSVD--DGGGPVTG-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000429.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000429.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5e2512b8cb04dbdb113f034c2aeefd268a5208d6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000429.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00500
+M-TPRSLAGLALAVAALAAAFALMAPTAPGLFVGVLTAGTLGFGPFYGEPTRHLVDRPWR
+RDRRWHELARRVRTDWLSRQLGAAGWNAAIRRRITGRADLRRIRTAAVGSLVSHAASVGL
+HGIAALALAVVGHPGWGLLAVLLGLVVHAWPALLQVAVLGRIDGLQAQLRGDRLLW----
+---
+>KBS0714_MOLHKGIG_02245
+M-TPRSLAGLALTVAALMSAFVLMAPTAPGLFVGVLTVGTFGFGPFYGEPSRQLVDRPWR
+RDTRWRDLARRVRTDWLSRQLGAVGWNAAISRRITGRADLRRIRTAAVGSLVSHAASAGL
+HAVAGVALAAVGHPVWGVVAVALGLVVHAWPALLQVSVLGRIDGLQTQIRGDQLLW----
+---
+>KD337_NAFOICDF_00511
+MRIPAVCAAVAV-VTLLAWGFRQVVPASPGAYVAVLTAATVGFGPFYGVPTRAVVDLPWR
+RLRRLRALAARAHTWWLARQLRVAGSDARIRRRIRSRADVLAFRREAVGRLLNHGLSAVL
+HAAAGVALAAAGHPLWGVVAVVAGLLVHGWPGLLQVGVLGRVDELQATVQARRGVGGAAS
+AGR
+>SA211_MHAAABBN_01947
+M-TPRSLAGLALTVAALMSAFVLMAPTAPGLFVGVLTVGTFGFGPFYGEPSRQLVDRPWR
+RDTRWRDLARRVRTDWLSRQLGAVGWNAAISRRITGRADLRRIRTAAVGSLVSHAASAGL
+HAVAGVALAAVGHPVWGVVAVALGLVVHAWPALLQVSVLGRIDGLQTQIRGDQLLW----
+---
+>TT9_LFPAFLNI_02177
+M-TPRSLAGLALTVAALMSAFVLMAPTAPGLFVGVLTVGTFGFGPFYGEPSRQLVDRPWR
+RDTRWRDLARRVRTDWLSRQLGAVGWNAAISRRITGRADLRRIRTAAVGSLVSHAASAGL
+HAVAGVALAAVGHPVWGVVAVALGLVVHAWPALLQVSVLGRIDGLQTQIRGDQLLW----
+---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000431.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000431.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0cd5ce0c38b3124617ca044b1c5502823a49f5f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000431.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00505
+MPDSAARHSAARHDVPAPPPFGPVLHHRAHGMAPGDAISPPLVHASAFHLPGAGPDGAPA
+EPAAQGGFQYARWGTPTWAALEAALGVLEDADVAVVPSGMAAIASVLLSHLRPGDRALLP
+SDGYGATRALAAEHLSPIGVHVDLVPTPALASADLSAYDLVFVETPSNPGLRVADLADVA
+ARAHANGRRGGAGALVVVDNTSLTPLGQRPLDLGADVVVASDTKALNGHSDALGGHVASR
+DADVLARVRGWRTLTGAILGTHEAWLIHRGLETLEVRFARMCASALAVAELAAGHSAVRA
+VAYPGLPDHPDAEVVARQTTAAGSVVGLEFADAAAAERFLAAARLVVPQTSFGGTHTSAE
+RRARWGDDVPAGFVRLSVGVEPTAELLADVERALEAAG-----
+>KBS0714_MOLHKGIG_02240
+MS-----------AAPPPPAFGTVLHHRAHGMAPGESISPPLVHASAFHLPGADPDGAPT
+APGADVPFQYARWATPTWSALEAALGALEDADVAVVPSGMAAIAAVLLPLLHPGDRALLP
+ADGYGPTRALAAEHLTPRGVHVDLVATQGLAHADLSGYDLVLVETPSNPGLRVADLADVA
+ARAHANGRRDGAGALVVVDNTLLTPLGQRPLELGADVVVASDTKAVNGHTDALGGHVASR
+DPQVMARVRGWRTLAGGILGTHEAWLIHRGLETLEVRFARMCASAQAVAELAAGHPAVRA
+VVYPGLADHPDAEVVARQMTAAGGLVGLRFADAAAAERFIAAAQYVVPQTSFGGTHTAAE
+RRARWGDDVPDGFVRLSVGVEPTAELLADLERAMTAAGGGPTA
+>KD337_NAFOICDF_00441
+M------------ASPQPPAFGPVLHHRAHGMAPGDAISPPLVHASAFHLPGAGPDGAPV
+APGADVAFQYARWGTPTWAALEAALGVLEDADVAVVPSGMAAIAAALLPVLRPGGRALLP
+SDGYGATRALAAEHLVPAGVHVDFVSTPGLADAGFSAYDLVFVETPSNPGLRVADLADVA
+ARAHANGRRDGKGALVVVDNTSLTPLGQRPLDLGADVVVASDTKALNGHTDALGGHVASR
+DPELMTRVRGWRTLAGGILGTHEAWLIHRGLETLEVRFARMCASALAVAELAAGHPAVRA
+VAYPGLPDHPDAAIVARQMTAAGGVVGLEFADAAAAERFIGAAAYVVAQTSFGGTHTAAE
+RRARWGDDVPAGFVRLSVGVEPTAELLTDLARALDAAAG--PA
+>SA211_MHAAABBN_01942
+MS-----------AAPPPPAFGTVLHHRAHGMAPGESISPPLVHASAFHLPGADPDGAPT
+APGADVPFQYARWATPTWSALEAALGALEDADVAVVPSGMAAIAAVLLPLLHPGDRALLP
+ADGYGATRALAAEHLTPRGVHVDLVATQGLAHADLSGYDLVLVETPSNPGLRVADLADVA
+ARAHANGRRDGAGALVVVDNTLLTPLGQRPLELGADVVVASDTKAVNGHTDALGGHVASR
+DPQVMARVRGWRTLAGGILGTHEAWLIHRGLETLEVRFARMCASAQAVAELAAGHPAVRA
+VVYPGLADHPDAEVVARQMTAAGGLVGLRFADAAAAERFIAAAQYVVPQTSFGGTHTAAE
+RRARWGDDVPDGFVRLSVGVEPTAELLADLERAMTAAGGGPTA
+>TT9_LFPAFLNI_02172
+MS-----------AAPPPPAFGTVLHHRAHGMAPGESISPPLVHASAFHLPGADPDGAPT
+APGADVPFQYARWATPTWSALEAALGALEDADVAVVPSGMAAIAAVLLPLLHPGDRALLP
+ADGYGPTRALAAEHLTPRGVHVDLVATQGLAHADLSGYDLVLVETPSNPGLRVADLADVA
+ARAHANGRRDGAGALVVVDNTLLTPLGQRPLELGADVVVASDTKAVNGHTDALGGHVASR
+DPQVMARVRGWRTLAGGILGTHEAWLIHRGLETLEVRFARMCASAQAVAELAAGHPAVRA
+VVYPGLADHPDAEVVARQMTAAGGLVGLRFADAAAAERFIAAAQYVVPQTSFGGTHTAAE
+RRARWGDDVPDGFVRLSVGVEPTAELLADLERAMTAAGGGPTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000433.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000433.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e38816762de55989e26361083fd94959d9a3c269
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000433.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00514
+MSLRLSHTTWDALDPHAVAEFWRELMGWEV-----TEPEAYELGSDECYLVTPH-----G
+YTILFYRVPDAKRVKNRAHMDLAV-DDGTRDEEVERALGMGATMVD--DRRGDLGWAVLA
+DPEGNEFCILDI---
+>AS2_ACLBLIBL_00528
+MALKWYTLVVDCRDPQAQAHWWARALDWEVVHDTPEEAVAVPKGVGEEPVADPDEWRARG
+QGLVFVPVPEGKTVKNRLHIDLAPHTSQDRDAEIARLEELGATRVDVGQDEEEVTWTVLA
+DPEGNEFCVLSSRDS
+>KD337_NAFOICDF_00455
+MSLRLSHTTWDALDPYAVAEFWRELMGWDV-----AEPDSYAPGSDECYLATAE-----G
+YTVLFYRVPDAKRVKNRAHMDLMT-AGTTRDEEVERALGLGASMVD--DRRGDLGWAVLA
+DPEGNEFCILDTGD-
+>SA211_MHAAABBN_02211
+MSLRLSHTTWDALDPHAIAEFWRALLGWEV-----DEPHLYRPGSDECSLVGPD-----G
+QVVLFFRVPDAKRVKNRAHMDLRAAAGSTRDAEIERALALGAAMVD--DRRVDLGWAVLA
+DPEGNEFCILDG---
+>TT9_LFPAFLNI_00218
+MSLRLSHTTWDALDPHAIAEFWRALLGWEV-----DEPHLYRPGSDECSLVGPD-----G
+QVVLFFRVPDAKRVKNRAHMDLRAAAGSTRDAEIERALALGAAMVD--DRRVDLGWAVLA
+DPEGNEFCILDG---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000437.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000437.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1c3980e60019c6ed5c233a23eb480d4b081810d0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000437.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00527
+MSAR-AARAARAGEGR-QGSDAPAGADARPGAAGSALLFAMAIVAGSTIPVQARLNSALA
+ERSGDPTLAAVASFAAGLVLVAAVTVLTPAGRRGLRAVRPALAAGRVRWWYLLAGTIGGA
+MVFSQATTVGLIGVAVFTVAVVTGQLIGGMVVDRLGLTPAGVRRMTPRRLAGAALALACV
+VLVVAPQLGARGDGGPPLWLLVALAPLAVGLATSIQQTLNARQAAAYGSVLPVTTVNFVA
+GTGILALVHLGGRLGGGVG-GTLPGDWWLYLGGPMGVVFIAFSAYLVPRVGAFLTMLGLV
+SGKLLGSLAVDALAPVGEVAASPWTVVGTLGALAAVVLASGAARPA---------RKG
+>KBS0714_MOLHKGIG_02219
+MPPEPSAPSGERGPARPHPADVAARPDAP-SPRATALLFALAVAAGSVMPLQGRINSRLA
+HLTGDPVLAALCSFAAGLVVMVLVSVLTPRGRRGLARIRPALAAGSVRPWYAVAGVIGGL
+LVLTQSATIGPLGVAVFTVAVVTGQVVGGMVVDRLGLSPAGVQRLTPRRLTGAALALAAV
+ALVVWPSLGEAG--GGPGWALLALLPLLAGLATAGQQVFNARQTTAYGTAIPATLVNFTA
+GVLFLGIVWGGIALASGHGLPALPHDWRLYLGGPLGCVFIGVGAMVVPRLGVFAATLGLV
+SGNLLGSLVVDLVAPTDGSTVTTTTVLGTLGALAAVALASWPA------------RRR
+>KD337_NAFOICDF_00465
+M-----------------PASSPALTPAPRSGATTALLFLLALVAGLAMPVQGRVNSALS
+LAVGSPALAACASFATGLAVLVLATLLLPSGRRGAARIPAAVRNGDVRWWQLLAGTIGAA
+FVLTQAWTIPLIGVAVFTVAVVTGQMLGGMLWDRLGWTPAGVQRISRRRLFGALLAFCAV
+TAVVWPRLQESG--SPGAWLALAVLPLAAGVATSGQQAMNGHQTAHFGTPLPPTLVNFAA
+GTAVLAAA-TAVAAGTGAGMGPLPAAWWMYLGGPLGTVFVGLGAFLIPRVGAFLTTLGMV
+AGQLVGSLLLDVVAPAPGAQVTWLTVVGTLGALAAMVVASSPQVPAGLRASRRRARRG
+>SA211_MHAAABBN_01932
+MPPESSVPSAERGPSRPRPAAVAARPEAP-SPRATALLFALAVAAGSVMPLQGRINSRLA
+HLTGDPVLAALCSFAAGLAVMVLVSVLTPRGRRGLARIRPALAAGSVRPWYAVAGMIGGL
+LVLTQSATIGPLGVAVFTVAVVTGQVVGGMVVDRLGLSPAGVQRLTPRRLTGAALALAAV
+ALVVWPSLGEAG--GGPGWALLALLPLLAGLATAGQQVFNARQTTAYGTAIPATLVNFTA
+GVLFLGIVWGGIALASGHGLPALPHDWRLYLGGPLGCVFIGVGAMVVPRLGVFAATLGLV
+SGNLLGSLVVDLVAPTDGSTVTTTTVLGTLGALAAVALASWPA------------RRR
+>TT9_LFPAFLNI_02158
+MPPEPSAPSGERGPARPHPADVAARPDAP-SPRATALLFALAVAAGSVMPLQGRINSRLA
+HLTGDPVLAALCSFAAGLVVMVLVSVLTPRGRRGLARIRPALAAGSVRPWYAVAGVIGGL
+LVLTQSATIGPLGVAVFTVAVVTGQVVGGMVVDRLGLSPAGVQRLTPRRLTGAALALAAV
+ALVVWPSLGEVG--GGPGWALLALLPLLAGLATAGQQVFNARQTTAYGTAIPATLVNFTA
+GVLFLGIVWGGIALASGHGMPALPHDWRLYLGGPLGCVFIGVGAMVVPRLGVFAATLGLV
+SGNLLGSLVVDLVAPTDGSTVTTTTVLGTLGALAAVTLASWPA------------RRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000440.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000440.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3d8fa25b9684ac8222ac9974573de9f48eb44c7b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000440.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00541
+M-----------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------------------LPAPTAR
+LRFREMTEADLDAMAALLGDPAVMRFYPAPRTREQAAEWIAGNRRRYAQDGHGLWVIETL
+PEHSDDGEPGFVGDCGLTWQEVNGEPRLEVGYHVRADLWGRGYATEAAAACRDHARDALG
+HHELVAIIHPENSVSRRVAEKIGLREAEQDFTGAAEAR-ETMGLASRTVMAMRF----
+>KBS0714_MOLHKGIG_02202
+M-----------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------------------PPAPTAR
+LRFREMADADLDHLAGLLADPVVMRFYPAPRTRAEAAAWIAGNRRRYAQDGHGLWIIET-
+---HDDGGPGFVGDCGLTWQEVNGEPRLEVGYHVRADLWGRGYATEAAAACRDHARDVLG
+HHELVAIIHPENTASRRVAERIGMTVVGEDRTGAPEAR-AALGLEARTVLGMRLRPGA
+>KD337_NAFOICDF_00472
+MTQPIPRHPDPGNTGTDALDDVVREHMLLLRRAVHGLGAYRRPEALDRSAVLLLARLEAQ
+GPMTMAELAAAFGLDVSTLQRQIGAAQRAGFVERFRDPAGGQARLHRATDAGRAALEGEL
+AARRAAVAEVTRSWPAPDVAALARLLRRFNEGSEELREQPWPRERPEAPGAAAVPAGTAR
+LRFREMTEADLDVLVGLLGDPEVMEFYPAPKTRAEVADWIAWNRRSYAEHGHGLWIVET-
+---H---AGAFVGECGLTWQRVNGERRLEVGYHVAPVLQGRGYATEAAAACRDHARDVLG
+APELVAIVHPENTASRRVAEKIGMEVLEEDRTGVDASYLEAIGAEARTVLGMRL---A
+>SA211_MHAAABBN_01915
+M-----------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------------------PPAPTAR
+LRFREMADADLDHLAGLLADPVVMRFYPAPRTRAEAAAWIAGNRRRYAQDGHGLWIIET-
+---HDDGGPGFVGDCGLTWQEVNGEPRLEVGYHVRADLWGRGYATEAAAACRDHARDVLG
+HHELVAIIHPENTASRRVAERIGMTVVGEDRTGAPEAR-AALGLEARTVLGMRLRPGA
+>TT9_LFPAFLNI_02146
+M-----------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------------------PPAPTAR
+LRFREMADADLDHLAGLLADPVVMRFYPAPRTRAEAAAWIAGNRRRYAQDGHGLWIIET-
+---HDDGGPGFVGDCGLTWQEVNGEPRLEVGYHVRADLWGRGYATEAAAACRDHARDVLG
+HHELVAIIHPENTASRRVAERIGMTVVGEDRTGAPEAR-AALGLEARTVLGMRLRPGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000441.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000441.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9e80b04be58cd7e3a6ea2e1aff235c75d92b16d8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000441.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00542
+M-------------------------------------------------------------------------------
+-----LAAVLAFALIGAVLWAALAL------------------------------------------------------G
+P-------------------------------DGVPGQQGSRRPAA----STPAPPTVSAEGFAEPVRGRV---------
+--TSRFGPRPNPF-GEGSAPPSTDTDALTDHTGVDLGGVPEGTPFHSVSDGRVLFVEAGEDAGGNLLA--VDSGDGHVWR
+YLHAAPDSTVVNAGQRVSAGDALAGVGQTGTATGVHLHLELR---VDGTPVDPEPYLRER--------------------
+--------------------------------------------------------------------------------
+---------------------GVEL----GSSWERPRR---------------------------------R
+>KBS0714_MOLHKGIG_02200
+MT------------TP-----------TPGA------GSPGSGVAG----------------------------------
+---GVLAAVGALALIATVLALVLAF------------------------------------------------------G
+PAGRD---------------------------DAGAGAERRRWNGG----FTPAPPTVNTQGYAEPVQGRV---------
+--TSRFGPRPNPF-GEGVVPSGVSEEALTRHDGVDLGGVPEGTPFHSVSDGRVLFVEAGGDAGGNLLA--VDAGDGHVWR
+YLHAAPDSTVVDAGQRVSAGDHLAGVGQTGAATGVHLHLELR---VDGEPVDPEAYLAER--------------------
+--------------------------------------------------------------------------------
+---------------------GVEL----GGSYPERRRG------------------------------LSR
+>KD337_NAFOICDF_01787
+MKKLAVIAAVLVLFSPALLLLGVGMIFSPGANASCTTSTTGPSVVGPVPDSLDVTTADGQTFTLNTTQLTHAATIIQTGS
+QIEGVTRDGLQIALMAALTESNLRMLANTSVYPDSGNHPNDGDASDHDSLGLFQMRPQAGWGTVPDLMDPGYQARAFFGG
+PTGPNHPSPRGLLDIPGWQTLSKGEAAQAVEVSAYPDRYANYEPVAEQILTTLTTPTADSPQL--PETGRVVFPLPEGTW
+VATSPFGMRVHPITGENKL-----------HTGADYSA-PDGTPVLAAADGIVTHASMSGGYGGLIIIEHTTGGQKIATA
+YAHLWETGIHVNVGDQVTAGQHIGDVGSAGYSTGAHLHFELRQGGSDGEFTDPQPWLDQHTSGNLPAPTTPVEQEGCNPV
+ATQPAPPQGPDAGDPDRKVDDPTTDGQITARMLHVYTQALTAYPDSSWACYSPRPGTKSEHPLGRACDVTFGNAIGSRPT
+PQQLEAGWALTNWLQDNAETLGVEYLIWQGQIWSLARDAEGWRPYNGGGMHDPTDVTGGHYDHVHITVKEGS
+>SA211_MHAAABBN_01913
+MT------------TP-----------TPGA------GSPGSGVAG----------------------------------
+---GVLAAVGALALIATVLALVLAF------------------------------------------------------G
+PAGRD---------------------------DAGAGAERRRWNGG----FTPAPPTVNTQGYAEPVQGRV---------
+--TSRFGPRPNPF-GEGVVPSGVSEEALTRHDGVDLGGVPEGTPFHSVSDGRVLFVEAGGDAGGNLLA--VDAGDGHVWR
+YLHAAPDSTVVDAGQRVSAGDHLAGVGQTGAATGVHLHLELR---VDGEPVDPEAYLAER--------------------
+--------------------------------------------------------------------------------
+---------------------GVEL----GGSYPERRRG------------------------------LSR
+>TT9_LFPAFLNI_02144
+MT------------TP-----------TPGA------GSPGSGVAG----------------------------------
+---GVLAAVGALALIATVLALVLAF------------------------------------------------------G
+PAGRD---------------------------DAGAGAERRRWNGG----FTPAPPTVNTQGYAEPVQGRV---------
+--TSRFGPRPNPF-GEGVVPSGVSEEALTRHDGVDLGGVPEGTPFHSVSDGRVLFVEAGGDAGGNLLA--VDAGDGHVWR
+YLHAAPDSTVVDAGQRVSAGDHLAGVGQTGAATGVHLHLELR---VDGEPVDPEAYLAER--------------------
+--------------------------------------------------------------------------------
+---------------------GVEL----GGSYPERRRG------------------------------LSR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000442.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000442.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ec529d808bbbdc30e40e4175bf17000880826bad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000442.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00543
+MSFTAPRRVLRRHRLTQVGALGAGLALLLTACGGGSEPAESSSPAPTGSSSSPAEATTAS
+PSAESSPTTSPSGSVGSTAA-AGSSGSGGAYVPASAEGPARNVPKPEMPAVTKEETQEGA
+EAAVEYFWEAAYYLQQTGDSEYQESVSSPTCKFCDLQRTSMEGHYRDGGWMKVEAVNIAS
+MVTRPSANGYMSTLLLDMPKEEAFASQGGKAESIGTQPALEESPWIAETSFSEEAGHWVI
+EAMIAGGS----
+>KBS0714_MOLHKGIG_01043
+MSLTAPGRALRRHRFAQAGTLSVALALALTACGGQSEPAESSTTSP--SSAKPAVETSAP
+AS------TSETAGVSSSPT-ATESGS-GEYVPASADGPARSVPKPEMPADMKEETKEGA
+EAAIRYFWDVHYYAEQTGDTELLDSLYSEYCEFCQFSSNDLQMIYKDGGWYTGTEVQIDS
+ILTHRSETGYVSTLLVTTGTGTGYTKGGVVPEN-GDVEAASKQPWIAEVSFNPESSHWIV
+DEMSYEGSIGSN
+>KD337_NAFOICDF_01734
+MTLPAPRRTLRRRRLARTGALSGALLLALTACAGGGADSGASSAST--TTTAPAASSTSA
+AA------SSSTGGASASESDATTSGAAGEYVPASSKGPAQNVPKPVMPAAVKENTPEGA
+EAAVKYWWEAVNYLQQTNDPEPLKSISMEECNLCSAHIKTIKRIYGDGGWATGENFAVNS
+VSMEKKKDFTLATVAISTDDSATFNADGVKVDQ-APADAGTDAPWGVLLKFDSNKGQWVV
+REAEYDFQEG--
+>SA211_MHAAABBN_00756
+MSLTAPGRALRRHRFAQAGTLSVALALTLTACGGQSEPAESSTTSP--SSAKPAVETSAP
+AS------TSATAGVSSSPT-ATESGS-GEYVPASADGPARNVPKPEMPAAMKEETKEGA
+EAAIRYFWEAIYYTDQTGETADFDSTYSEYCELCQAVSDSTAQHYKEGGWSTGEHTSIKS
+LTLTPSEFGYTATLVRDASAVDVFDSQGVRDDS-ASGAETHDETWLADVVYEPSKGHWVI
+DEMQNQQDAQ--
+>TT9_LFPAFLNI_00984
+MSLTAPGRALRRHRFAQAGTLSVALALALTACGGQSEPAESSTTSP--SSAKPAVETSAP
+AS------TSETAGVSSSPT-ATESGS-GEYVPASADGPARNVPKPEMPAAMKEETKEGA
+EAAIRYFWEAIYYTDQTGETADFDSTYSEYCELCQAVSDSTAQHYKEGGWSTGEHTSIKS
+LTLTPSEFGYTATLVRDASAVEVFDSQGVRDDS-ASGVETHDETWLADVVYEPSKGHWVI
+DEMQNHQDAQ--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000443.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000443.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2e2e2c4d98a5655e1eaf9c8fe8ed4f616cbef876
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000443.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00545
+MSVVVLTGADG-------------------------GARLGHTAPMDMSLVMLVPALVAL
+AALMVGGALQRVSGMGVGMIAGPTLSLLLGPVAGVSLANVAAVVSAVLLFALLRRHVDWG
+RFLRLAPLLIVGSFAGAWAVRSLDVHALEVLLGGSVLVAIAASLGLQRRFTASGSAPAAL
+AGTAAGFMNTTAAVAGPALAVYAVASRWEQRSWAATLQPIFLLANLTSLATKSLFGTAVP
+ASVDVHWTVWTAVVVGGPIGVLIGSRIAPRVNPSRARLLAICVAGVGASVALLRGIVGLL
+A
+>KBS0714_MOLHKGIG_02198
+---------------------------------------------MDPSLVWL-PAVVAL
+AAITVGGTLQRVSGMGVGMIAAPTLSLLLGPVAGVTLSNVAASVSAVLLFAVLHRHVDWP
+RFVRLAPLLVAGSFAGAWAVRVLDAHALEILLGSSVLVAVAAVLGLQQRFTAQGNGAVFA
+SGAVAGFMNTTAGIAGPALAVYAVASRWDQRSWAATLQPVFLLANLTSLVTKSLFGAAVP
+AGLHVPWPVWVAVVVGGPLGVLLGSVVARRVDPAKARVLAICLAGVGGTVALVRGVAGTL
+G
+>KD337_NAFOICDF_00481
+MAATAAAAVRTAERARSGGGVTVPVWHAPAVASRRRGAR-AHTAGVSISL-----AAVVF
+LCVAVGGVLQRISGMGVGMVAAPTLSLLVGPVAGVTMSNAAASVSALILFWMLRRHVDWP
+RFLRLAPLLVVGALAGAWTVRVMDHAWLEVVLGACVLVAIAAVLGLQDRLTLRGSAAVFG
+SGAVAGFMNTTAGVAGPALAVYAVASKWEQRSWAATLQPIFLTANVTSIVLKASLGATAG
+AAA-VPWWAWAAAVAGAPAGIAVGSRLARRVDPGRARRVAVTLAGVGAAVTLVRGLASL-
+-
+>SA211_MHAAABBN_01911
+---------------------------------------------MDPSLVWL-PAVVAL
+AAITVGGTLQRVSGMGVGMIAAPTLSLLLGPVAGVTLSNVAASVSAVLLFAVLHRHVDWP
+RFVRLAPLLVAGSFAGAWAVRVLDAHALEILLGSSVLVAVAAVLGLQQRFTAQGNGAVFA
+SGAVAGFMNTTAGIAGPALAVYAVASRWDQRSWAATLQPVFLLANLTSLVTKSLFGAAVP
+AGLHVPWPVWVAVVVGGPLGVLPGSVVARRVDPAKARVLAICLAGVGGTLALVRGVAGTL
+G
+>TT9_LFPAFLNI_02142
+---------------------------------------------MDPSLVWL-PAVVAL
+AAITVGGTLQRVSGMGVGMIAAPTLSLLLGPVAGVTLSNVAASVSAVLLFAVLHRHVDWP
+RFVRLAPLLVAGSFAGAWAVRVLDAHALEILLGSSVLVAVAAVLGLQQRFTAQGNGAVFA
+SGAVAGFMNTTAGIAGPALAVYAVASRWDQRSWAATLQPVFLLANLTSLVTKSLFGAAVP
+AGLHVPWPVWVAVVAGGPLGVLLGSVVARRVDPEKARVLAICLAGVGGTVALVRGVAGTL
+G
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000446.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000446.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a9545d1677838ddaa83b2c8f86c0d324db58f1f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000446.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00548
+M----SSTPTDAD----HHGPGPVSVPAHLDDLPPATLVARGLTLRGGRGPVFGPLDLVL
+PPQTHLAVLGTQGSGRSALLLALTGRLRGVRGELVLTGGPVDVALDGPERPAARAYRPLI
+DATRHPYALRARTAIAHTTDVVELEPALTAAEVVDERCLADGVRRRAGRARFALLADAVR
+LTVAPEAVVGELSAPDRALLAAVVACLRPARLVTFDDVDATLTLDELVALHAALDVLKDH
+GHPFAVSAVASAPVPRDAVVLTLP--------------PVREN
+>KBS0714_MOLHKGIG_02196
+M----SSTPTDAD----HHGPGPAPVPAHLDDLPPATLVARGLTLRGGRGPVFGPLDLVL
+PPQTHLAVLGTQGSGRSALLLALTGRLQGVRGELVLTGGPVDVALDGPERPAARAYRPPI
+DAARHPHALRARTAVAHTTDVVELEPALTAAEVVDERCLADGVRRRAGRARFALLADAVR
+LSVAPEAVVGELPAPERALLAAVVACLRPARLVTFDDVDATLTIDELVALHAALDVLKDH
+GHPFAVSAVASAPVPRDAVVLTLP--------------PVREN
+>KD337_NAFOICDF_00479
+MTEDQTPAPIETDDVVAERAPEPAPGGSHQVG---RALTARGLTLRSIRGTVFGPVDVDL
+PPGVPGAVLGTQGSGRSALLLALVGRLQGVGGELTLGD---------------------M
+DGIRHPHRLRRATTVARITDYVELEPLLTIRECIDEHCLAEGISRRTGRKRFARLEAAVG
+FHPDHGDQVSSLPVEDRTILTCMLACLRPADVIVYDDIDSSLTRPQLEHVYRVLETLGRL
+GHRFVVSALTSAPVPRGAVVVELPTPGHDDLPAALPTRPSLED
+>SA211_MHAAABBN_01909
+M----SSTPTDAD----HHGPGPAPDPAHLDDLPPATLVARGLTLRGSRGPVFGSLDLVL
+PPQTHLAVLGTQGSGRSALLLALTGRLQGVRGELVLTGGPVDVALDGPERPAARAYRPPI
+DAARHPHALRARTAVAHTTDVVELEPALTAAEVVDERCLTDGVRRRAGRARFALLADAVR
+LTVAPEAVVRELSAPDRALLAAVVACLRPARLVTFDDVDATLTIDELVALHAALDVLKDH
+GHPFAVSAVASAPVPRDAVVLTLP--------------PVREN
+>TT9_LFPAFLNI_02140
+M----SSTPTDAD----HHGPGPAPVPAHLDDLPPATLVARGLTLRGGRGPVFGPLDLVL
+PPQTHLAVLGTQGSGRSALLLALTGRLQGVRGELVLTGGPVDVALDGPERPAARAYRPPI
+DAARHPHALRARTAVAHTTDVVELEPALTAAEVVDERCLADGVRRRAGRARFALLADAVR
+LSVAPEAVVGELPAPERALLAAVVACLRPARLVTFDDVDATLTIDELVALHAALDVLKDH
+GHPFAVSAVASAPVPRDAVVLTLP--------------PVREN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000449.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000449.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bfae65331f8d98e539c35308b12951207de0e702
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000449.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00557
+MSIPATEVEARWNEASEPFTAVVRAVRDWDAATPCEGWDALDLLDHVVGAERDFAARQGR
+EVPLFDGSRQQTANQWTKHSAALSALAGDEEFIMKPMHTALGEMTVGEAMIRFHAFDLIV
+HRWDLARSQGVDERFTDAEMDCIEESLDLFGDAAYTPGILAQPVPVADDADRQARLLGRL
+GRRA
+>KBS0714_MOLHKGIG_02189
+MSIPATEVEARWNAAAEPFTAVVREVRDWDAATPCEGWDALDLLDHVIAGQRDFAARQGR
+EVPLFDGSRQQLATQWAKHAAAMSALAGDEEFIMRPMKTALGEMPVGEALIRFHAFDVIV
+HRWDLARSQGVDARFTDAEIDCVEESLELFGDAAYTPGILGEPVPVADDADRQTRLLGRL
+GRRG
+>KD337_NAFOICDF_00484
+MST-QTDVEQYWMDCVEPFTDVVRAVEDWDASTPCKGWSAQDLLDHVVVAERDFAARQGR
+EIPVFDGSRNELWTQWVKHASAVTALAGDETFIMQSLHTATGDMTVGEALLHFHGFDLLV
+HRWDLARSQGRDEQWTDEEMDRIERALDSFGEQAYQPGILADPVPVADDAPRQVRLLGRL
+GRRA
+>SA211_MHAAABBN_01903
+MSIPATEVEARWNAAAEPFTAVVREVRDWDAATPCEGWDALDLLDHVIAGQRDFAARQGR
+EVPLFDGSRQQLATQWAKHAAAMSALAGDEEFIMRPMKTALGEMPVGEALIRFHAFDVIV
+HRWDLARSQGVDARFTDAEIDCVEESLELFGDAAYTPGILGEPVPVADDADRQTRLLGRL
+GRRG
+>TT9_LFPAFLNI_02134
+MSIPATEVEARWNAAAEPFTAVVREVRDWDAATPCEGWDALDLLDHVIAGQRDFAARQGR
+EVPLFDGSRQQLATQWAKHAAALSALAGDEEFIMRPMKTALGEMPVGEALIRFHAFDVIV
+HRWDLARSQGVDARFTDAEIDCVEESLELFGDAAYTPGILGEPVPVADDADRQTRLLGRL
+GRRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000451.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000451.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a473e2dfcc684eb847261c50bdabddff634b40ba
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000451.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00563
+M----EQDRDPEESSQ--------------STAIETLRGTPVSELTHLPPAMAGALDRLR
+RDVERFDLEYRSALLQVEARLEVLRDEFTHLHDYNPIEHIVTRVKTPESILRKAASRGLS
+MDLDALRSNVTDIAGARVIVSFARDVYEVFRLFTRQPDIRVLEVEDYISRPKPSGYRSLH
+CLVQVPVHLSTGSIPVTVEMQFRTSAMDFWATLEHKINYKFDGAVPPDITTELIAAARVA
+ADLDTRMERLSDQVRQTDKDDDAAASWEDDGGPAFEDEGD---------DDGPDGDAPGT
+STG
+>KBS0714_MOLHKGIG_02186
+M----EQDPSPDAPAP--------------SADVEALRGTPVSELTQLTPAASGALERLR
+RDVERFDLEYRSALLQVEARLEVLRDEFTHLHDYNPIEHIVTRVKSPESILRKASARGLS
+LDLDALRTNVTDIAGARVIVSFARDVYRVFRQFTQQPDIRVLEVEDYISRPKPSGYRSLH
+CLVQVPIHLSTGTIPVTVEMQFRTSAMDFWATLEHKINYKFDGGVPPDIATELVAAARVA
+ADLDTRMERLHDQVQETDRDDDAAAAWEDDGGPAFEDEPTVE-----PGEARPG-DAPGA
+STA
+>KD337_NAFOICDF_00489
+MPRDVDHPPPADDPAPVERPAPGGRGVTSASTALEALRATPLTDLTQLPGEVADALASLR
+TDFERFDLEYRSALLQVETRLETLQDEFTHLHEYNPIEHIATRVKSPESLLRKAASRGLS
+LDLDALRSGVTDIAGARVIVSFTEDVYRVFRQFTSQPDIRVLEVEDYIRDPKPSGYRSLH
+CLVQVPVHLTTGTVPVTVELQFRTIAMDFWASLEHKINYKFAGHVPPAITTELAAAARVA
+HDLDARMERLHQAVH------DAGA------GPDEHDDED---------------DWVGH
+A--
+>SA211_MHAAABBN_01900
+M----EQDPSPDAPAP--------------SADVEALRGTPVSELTQLTPAASGALERLR
+RDVERFDLEYRSALLQVEARLEVLRDEFTHLHDYNPIEHIVTRVKSPESILRKASARGLS
+LDLDALRTNVTDIAGARVIVSFARDVYRVFRQFTQQPDIRVLEVEDYISRPKPSGYRSLH
+CLVQVPIHLSTGTIPVTVEMQFRTSAMDFWATLEHKINYKFDGGVPPDIATELVAAARVA
+ADLDTRMERLHDQVQETDRDDDAAAAWEDDGGPVFEDEPAAG-----PGEARPGDDAPGA
+STV
+>TT9_LFPAFLNI_02131
+M----EQDPSPDAPAP--------------SADVEALRGTPVSELTQLTPAASGALERLR
+RDVERFDLEYRSALLQVEARLEVLRDEFTHLHDYNPIEHIVTRVKSPESILRKASARGLS
+LDLDALRTNVTDIAGARVIVSFARDVYRVFRQFTQQPDIRVLEVEDYISRPKPSGYRSLH
+CLVQVPIHLSTGTIQVTVEMQFRTSAMDFWATLEHKINYKFDGGVPPDIATELVAAARVA
+ADLDTRMERLHDQVQETDRDDDAAAAWEDDGGPAFEDEPAAGPDGTDPGEARPGDDAPGA
+STV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000452.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000452.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5b3aa2b4830f8a11ab005089b824168f15727685
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000452.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00565
+MNGQDGGQGRTTTDGATGREAPVPFETEIQVRWSDEDRYGHVNNARLLTLTEEARVRATR
+AWSGVTPGRDVHRVVRAMEVQYEAPVVY-GPELTAKVWIARIGTSSYTLRHELWQDGRRC
+VLCDAVFVHVDPETGRSVALAEDERVTLERVLIPAEADAT
+>KBS0714_MOLHKGIG_02185
+MTQP------TTPETPADAGTPTPFEVGLQLRWSDEDRYGHVNNARLLTLAEEARVRALA
+AWATTTASPDVQRVVRSMEVQYEAPVVYAGPEVTARVWILRIGRTSFTLRHELWQDGRRC
+VLCDAVFVQVDPAAGRPVAVSDEERAAFERVLIPAED---
+>KD337_NAFOICDF_00490
+MSDS----------------QPRPYEGVLDLRWSDMDLYGHVNNVRILTLTEEARVRALK
+AWDEGDVGRDVMRVVRAMTTEYERPVEY-GPELTAKVWVRALGRTSYTLHHELWQEGVRC
+VTCDAVMVHLDPETGAPLPHDDARRARLQAVLVPAEG---
+>SA211_MHAAABBN_01899
+MTQP------TTPETPADAGTPTPFEVGLQLRWSDEDRYGHVNNARLLTLAEEARVRALA
+AWATTTASPDVQRVVRSMEVQYEAPVVYAGPEVTARVWILRIGRTSFTLRHELWQDGRRC
+VLCDAVFVQVDPAAGRPVAVSDEERAAFERVLIPAED---
+>TT9_LFPAFLNI_02130
+MTQP------TTPETPADAGTPTPFEVGLQLRWSDEDRYGHVNNARLLTLTEEARVRALA
+AWATTTASPDVQRVVRSMEVQYEAPVVYAGPEVTARVWILRIGRTSFTLRHELWQDGRRC
+VLCDAVFVQVDPAAGRPVAVSDEERAAFERVLIPAED---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000456.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000456.fa
new file mode 100644
index 0000000000000000000000000000000000000000..14f39dd57f5a1a1a1357d21cd2b5b42f7de29fd9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000456.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00572
+MTRTVIIGGHGKVALLAAPLLAEAGHDVTSIIRNPEHAAEVEAAGAAPLVLDVERAGEED
+LVQAFRDADNVVFSAGAGGGDPARTRAVDHDAALATMRAAEAAGVRRYVMVSYLGASLHH
+GVPEDDSFHAYAQAKAEADEALRDSGLAWTILGPAALTLEEPTGRITVDPDLDTPDAPKG
+EVSRGNVARALVAVLADPTTVGRKIDFVDGDTPVAEAIRGA
+>KBS0714_MOLHKGIG_02180
+MTRTVIIGGHGKVALLAAPLLAEAGHDVVSIIRNPDHAEDVRAAGAEPLVLDIEKADQEE
+LLHALRDADNVVFSAGAGGGDAQRTRAVDHDAAVASMRAAEAAGVRRYVMVSYLGASLHH
+DVPEDDPFYTYAQAKAEADEALRDSGLAWTILGPGALTDEEPSGRITVDPDLSDSDAPQR
+GASRGNVARAIVAVLSEPGTVGRKIDFVDGDVPVAEAVRGD
+>KD337_NAFOICDF_00499
+MD-ILIIGGHGKIALLTAPLLADAGHTVTSAIRNPEHADDVRTAGAEPLVLDVEHSSPAE
+LEAAMRGRDVVVWSAGAGGGDPERTYAVDRDAAIASMDAARAAGVRRYVMVSYRGASVHH
+GVPEDSSFFAYAEAKAAADEHLRGSHLDWTILGPGALTLDEPTGRVQVDPQGPSEELP--
+GTSRGNVARMIAAAVDSGASIGRQVEFVDGDTPVDDVFR-R
+>SA211_MHAAABBN_01894
+MTRTVIIGGHGKVALLAAPLLAEAGHDVVSIIRNPDHAEDVRAAGAEPLVLDIEKADQEE
+LLHALRDADNVVFSAGAGGGDAQRTRAVDHDAAVASMRAAEAAGVRRYVMVSYLGASLHH
+DVPEDDPFYAYAQAKAEADEALRDSGLAWTILGPGTLTDEEPSGRITVDPDLSDSDAPQR
+GASRGNVARAIVAVLNEPGTVGRKIDFVDGDVPVAEAVRGD
+>TT9_LFPAFLNI_02125
+MTRTVIIGGHGKVALLAAPLLAEAGHDVVSLIRNPDHAEDVRAAGAEPLVLDIEKADQEE
+LVHALRDADNVVFSAGAGGGDAQRTRAVDHDAAVASMRAAEAAGVRRYVMVSYLGASLHH
+DVPEDDPFYTYAQAKAEADEALRDSGLAWTILGPGALTEEEASGRITVDPDLSGSDASQR
+EASRGNVARAIVAVLSEPGTVGRKIDFVDGDVPVAEAVRGD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000462.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000462.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2055bb840401dce31c5c0c6e0988d16e092d05e0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000462.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00579
+MSRIQSTTSPSSMAELKKVLPELSHPDGSPVRVLVVDDEPMIADLLSMGLSLCGWDVVVA
+HDGASAVEQGTARRPDLAILDVMLPDMDGLEVLERLRAHWPEVPAMFLTAKDATEDRVAG
+LASGGDDYVTKPFSMEEVLIRAHRLVQRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGQVI
+DLTATQYNLLKFLMANVRTVLSKERILQEVWGYDFGGRANIVELYISYLRKKIDADRDPM
+IHTIRGAGYVIRPA--
+>KBS0714_MOLHKGIG_02173
+------------MAELKKVLPELSHPDGAPVRVLVVDDEPMIADLLSMGFTLCGWEVIVA
+HDGATAAELGTAGRPDLAILDVMLPDMDGLDVLDRLRAHWSEMPAMFLTAKDATEDRVAG
+LAAGSDDYVTKPFSMEEVLIRAHRLVQRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEI
+ELTATQYNLLKFLMANVRTVLSKERILQDVWGYDFGGRANIVELYISYLRKKIDADRDPM
+IHTIRGAGYVIRPA--
+>KD337_NAFOICDF_00506
+MTSAEHTVSPASMAELRESLPDLTHQDGSPVRVLVADAEGLEADLLSMGYSLLGWETVVA
+KDTAAAVQEGTARRPDLALLDAGLPDGGGLEVLARLRAHWAEMPAIVLASPAEAEDRIAA
+LLAGADDVVAKPFAVEEILLRSHHLVRRAGLNASTGEELVVGDLVMNTRTHEVTRGGDLI
+ELTATQFNLLKFLMANVRTVLSKDRILQDVWGYDFGGRANIVELYISYLRKRIDAGREPM
+IHTVRGAGYVIRPAEG
+>SA211_MHAAABBN_01887
+------------MAELKKVLPELSHPDGAPVRVLVVDDEPMIADLLSMGFTLCGWEVIVA
+HDGATAAELGTAGRPDLAILDVMLPDMDGLDVLDRLRAHWSEMPAMFLTAKDATEDRVAG
+LAAGSDDYVTKPFSMEEVLIRAHRLVQRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEI
+ELTATQYNLLKFLMANVRTVLSKERILQDVWGYDFGGRANIVELYISYLRKKIDADRDPM
+IHTIRGAGYVIRPA--
+>TT9_LFPAFLNI_02118
+------------MAELKKVLPELSHPDGAPVRVLVVDDEPMIADLLSMGFTLCGWEVIVA
+HDGATAAELGTAGRPDLAILDVMLPDMDGLDVLERLRAHWSEMPAMFLTAKDATEDRVAG
+LAAGGDDYVTKPFSMEEVLIRAHRLVQRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEI
+ELTATQYNLLKFLMANVRTVLSKERILQDVWGYDFGGRANIVELYISYLRKKIDADRDPM
+IHTIRGAGYVIRPA--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000463.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000463.fa
new file mode 100644
index 0000000000000000000000000000000000000000..036e195e41410b0445a24d167e7e55bbfe12cd71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000463.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00582
+--------MNSDHLRALVSAVDHGTFDAAADALRISGSAFSQRVKALERQVGQVLLARTV
+PVRPTPAGERMLRLARHTLALEEEALASLGRGDGGRVPVRVAINADSLDTWWELVLREAA
+TWDDVVLQLRTEDQEHTAALLRDGTVVAAVTDDPTPVSGCTSTPLGTMRYHAVCASFLLE
+MHRDERGRLDLATLPRVDYGLRDGLQRTVLRRAARGR-AAFDPPHHLVPSVQSYLRAVEL
+GLGWGMLPSAQLPPGVLEGRHPDLEPVPSLGTVDLTLHWQRWSAGTAALDRLTDAVLRAA
+PSVADAAD
+>KBS0714_MOLHKGIG_02170
+MATPTLDRMNSDHLRALVAAVDHGTFDAAADSLRISGSAFSQRIKALERQVGQVLLARTV
+PVRPTAAGERMLRLARQTLALEDETLAALGRGDGGRVPLRVALNADSLDTWWEPVLREAA
+TWDDVVLQMQSEDQEHTAVLLRDGAVVAAVTDDPTPVAGCTSTPLGTMRYHAVCASFLLE
+LHRDARGRVDFGSLPIVDYGPRDGLQHTVLRRVTRGR-PVADPPTHLVPSVHAYLRAVEL
+GLGWGMLPSVQIPPGVLEGRHPDLETIPALGAADVHLHWQRWTAGTAALDRLTDAVLRAA
+PSAGDTAD
+>KD337_NAFOICDF_00508
+--------MNSDHLRALAAAVDEGTFDAAAAWLGISGSALSQRIKALEGQTGQVLLTRTV
+PVRPTEAGERMLRLARQTLPLEEEALAALGRGTGRRAPLRVGVNADSLETWWTPVLREAA
+TWDDVVLHLHAEDQGHTPELLRQGTVVAVVTDDPTPVTGCTVTRIGTMRYHAVAASFLLD
+LHRDAHGRVDVATMPVVDYGPRDGLQRTMLERAARGRVSVPRPPHHLVPSVGAYASAVGM
+GLGWGMLPTGQVPPELAAGSHPDLELVPELGTAEVPLYWQRWSAGTPALDRLTAAVTAAA
+PAG-----
+>SA211_MHAAABBN_01884
+MATPTLDRMNSDHLRALVAAVDHGTFDAAADSLRISGSAFSQRIKALERQVGQVLLARTV
+PVRPTAAGERMLRLARQTLVLEDETLAALGRGDGGRVPLRVALNADSLDTWWEPVLREAA
+TWDDVVLQMQSEDQEHTAVLLRDGAVVAAVTDDPTPVAGCTSTPLGTMRYHAVCASFLLE
+LHRDARGRVDFGTLPIVDYGPRDGLQHTVLRRVTRGR-PVADPPTHLVPSVHAYLRAVEL
+GLGWGMLPSVQIPPGVLEGRHPDLEPIPALGAADVHLHWQRWTAGTAALDRLTDAVLRAA
+PSAGDTAD
+>TT9_LFPAFLNI_02115
+MTTPTLDRMNSDHLRALVAAVDHGTFDAAADSLRISGSAFSQRIKALERQVGQVLLARTV
+PVRPTAAGERLLRLARQTLALEDEALAALGRGDGGRVPLRVALNADSLDTWWEPVLREAA
+TWDDVVLQMQSEDQEHTAVLLRDGAVVAAVTDDPTPVAGCTSTPLGTMRYHAVCASFLLE
+LHRDARGRVDFGSLPIVDYGPRDGLQHTVLRRVTRGR-PVADPPTHLVPSVHAYLRAVEL
+GLGWGMLPSVQIPPGVLEGRHPDLEPIPALGAADVHLHWQRWTAGTAALDRLTDAVLRAA
+PSAGDTAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000464.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000464.fa
new file mode 100644
index 0000000000000000000000000000000000000000..08d33dfe73e3ee12cbd633496ba15b0faf2fb92c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000464.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00583
+------------MTIFATGFLTYLALIVAIGAQTLFLLRQIVRRDRVWTVLIVCFLGDVA
+LLALGAAGIGVVAERWPWLVTALTVAGVVYLVWFAAGALRSAVRGQRTLA-AAAEAEGPA
+VGLTDGEIAALTGELPLIDPATGRLSADFTGRTAEGRAVPVGAGVGMGRGHDPLGDESRT
+VGGIPVGNPRLCGTRPGERGADGR-SGGVAVKQR----VQPRRVVLSAPQTPLPRIVLLA
+LSVSFLNPHAVLDTVVMMGTFAQTYGPGKWVYVGGAVAASLVWFTALGWGGTRLAPYMNT
+PRTWRIVDAAVGVLMLVIAAKVGLTLL
+>KBS0714_MOLHKGIG_02169
+MARTWDGSYPRSVTIFATGFLTYLALIVAIGAQTLFLLRQIVRRDRVWTVLTVCFVADVA
+LLVLGAGGVGVVAERWPWLVPALTVAGVVYLLGFAAGALRSAWRGDRTLSTAAADVEGTG
+HGPDRIDLAVLTGELPLIDPVTGRLA----------EREPAGAGVGH---HDD-------
+------GAPGF--------GAPSG-GGSVTVRQR----VQPRRVALDRPQTPLPRIILLA
+LSVSLVNPHAILDTVVMMGTFAQTFGAAKWAYVGGAVAASLVWFTALGWGGTKLAPSMDS
+ARTWRIVDAVVGVLMLGIAVKVGLTLL
+>KD337_NAFOICDF_00509
+------------MTVFSAGFLTYLALIVAIGAQTLFLLRQVVRGDRAWTAIGVCFLSDIV
+LLLAGAAGVGAAAERAPWLVPALTVAGVAYLVWFGVSALRSAHRGDRTLAGAAAEVEDDA
+WAPTAEEVAAMTGSLPVVAAG-----------------------------PDA-------
+------GADAA--------TAPAGTGGGVALRTRPVSTTAPASAAPRPALTPLPRLVLLC
+LSVSLLNPHAILDAVVMMGTFAQGYGADKWLYVAGAVASSALWFLVLGWGGAKLAPLMNT
+PRTWRIVDGAVGVVVLGIAGKVALTLF
+>SA211_MHAAABBN_01883
+MARTWGDSYPRSVTIFATGFLTYLALIVAIGAQTLFLLRQIVRRDRVWTVLTVCFVADVA
+LLVLGAGGVGVVAERWPWLVPALTVAGVVYLLAFAVGALRSAWRGDRTLTTAAADAAGTG
+HGPDRIDLAVLTGELPLIDPATGRLA----------EREPAGAGVGQ---HDD-------
+------GAPGV--------GAPSG-GGSVAARQR----VQPRRVALDRPQTPLPRIILLA
+LSVSLVNPHAILDTVVMMGTFAQTFGAAKWTYVGGAVAASLVWFTALGWGGTKLAPSMDS
+ARTWRIVDAVVGVLMLGIAVKVGLTLL
+>TT9_LFPAFLNI_02114
+MARTWDGSYPRSVTIFATGFLTYLALIVAIGAQTLFLLRQIVRRDRVWTVLTVCFVADVA
+LLVLGVGGVGVVAERWPWLVPALTVAGVVYLLAFAVGALRSAWRGDRTLTTAAADGAGTG
+HGPDRIDLAVLTGELPLIDPATGRLA----------DREPAGAGVGR---HDD-------
+------GAPGV--------GAPSG-GGSVAVRQR----VQPRRVALDRPQTPLPRIILLA
+LSVSLVNPHAILDTVVMMGTFAQTFGAAKWVYVGGAVAASLVWFTALGWGGTKLAPSMDS
+ARTWRIVDAVVGVLMLGIAVKVGLTLL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000465.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000465.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2d4255e5a0b907971cbddd77c8e6140284e8dbf0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000465.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00585
+-------------------------MLAAVLTLATPFLIGAATDRIVAAIAGETTVEDAVVAVTWLAVAFLAVEVTTTLV
+VSVGGYWGDVMAARMRTILSTRYFDQLLHLPQRYFDTAITGRVTNRLNRTINELTQFLQFFANNAFTMLITTTAVLVITA
+FYWWPLAILLAIVFPVYMWLTAKTSAKWQVWEGEKNIEVDMASGRFAEVVSQMSVVRAYNRQDHELAGFRERFTRTVGIT
+RKQSRFWHGMDAWRRLALNVVFGAMYLIVFVRTAQGLFSVGDMVILLQLMNMARQPIFSMSFLVDSAQRAVAGSRDYFEV
+LAEERERAGGAGPQGRGAAAVAAGQPRADDDGGTDVRWGGAAPSRPAQPRADVVPGDGTGGMP-AGPSADVVPAVRFDEV
+SFAYDPDASRPVLDRVSFEIPQGQRVALVGESGGGKSTIAHLLMGLYPVTGGRIEVFGQDVAELDLAELRERIAAVFQEP
+SLFSGTVRENIAYADPAASDERVRAAAEAAYAHRFVEAFDDGYEQVIGERGLRLSGGQKQRIAVARAVLKDAPILVLDEA
+TSALDTKSERLVQGALEELMVGRSSLIVAHRLSTIASVDRIVTLRGGRVQEVGTPAELAESGGIYAQLLRLQKAGTKEAR
+KMLKEYGLSG
+>KBS0714_MOLHKGIG_02167
+MTSLLRILRFAPQLNRLYLGIAVSSVLAAVLALATPFLIGAATDRIVAAVAGETDVAEAVTAVTWLAVAFLAVEVATTLV
+VSVGGYWGDVMAARMRTILSTRYFEQLLHLPQRYFDTAITGRVVNRLNRTINELTQFLQFFANNAFTMLITTAAVLVITA
+FYWWPLAILLAVVFPVYMWLTARTSTKWQVWEGEKNTEVDIASGRFAEVVSQMSVVRAYNRQDHELSGFRDRFLRTVGIT
+RQQSRFWHGMDAGRRLALNVAFGAMYLIVFVRTAQGLFSVGDMVILLQLMNMARQPIFSMSFLVDSAQRAVAGSKDYFEV
+LAEERERAGGAALAVAGASAESA---------------GADAPRVPAEPRADVVP-----GAP-DVPAD--VPAVRFDEV
+SFAYDADASRPVLDRVSFDIPRGARVALVGESGGGKSTIAHLLLGLYPVTSGRIEVFGQDVAGLDLAVLRGRIATVFQEP
+SLFSGTVRENIAYADPDASDERVRAAAEAAYAHRFVEAFDDGYEQVIGERGLRLSGGQKQRIAVARAVLKDAPILVLDEA
+TSALDTKSERLVQAALEELMVGRSSLIVAHRLSTIASVDRIVTLRGGQVQEIGTPAELAESGGIYAQLLELQRAGTQEAR
+KMLKEYGLSG
+>KD337_NAFOICDF_00512
+MRALLRILRFAPQLNPLYLGIAVCSVLAAALSLATPFLIGAATNRIVDAIAGRSTLDDAVAAVTWLALAFLAVEVATTAV
+VSVGGYWGDVMAARMRAALSGRYYDHLLHLPQRYFDTAITGRIVNRLNRSITELTQFLQFFSNNAFTMLITTAAVLVITA
+FYWWPLAVLLAVVFPVYMWLTAKTSAKWQGWEGEKNTEVDIASGRFAETVAQMNVVRAYNRQDHELAGFTERFRRTVGIT
+RKQSRFWHGMDAGRRLALNLVFGVMYLIVFVRTARGLFSVGDMVILLQLMNMARQPIFSMSYLVDSAQRAVAGSKDYFGV
+LAEERERSGGAALPAGLGSAEA---PT-----------TTTATGVVVRDRAEAPT-----GAPVRAGAD--VPAVRFADV
+TFAYDPEAERPVLDGVTFDIPQGAKVALVGESGGGKSTLAHLLMGLYPVGSGRVEVFGRDVAGLDLAVLRGQVAAVFQEP
+FLFSGTIRENIAYADPDASGERVRAAAKAAFADGFVEEFEHGCEQLIGERGLRLSGGQKQRIAVARAVLKDAPVLVLDEA
+TSALDTKSERLVQSALDDLMVGRSSLIVAHRLSTIASVDRIVTLRGGRVQEVGTPAELAQSGGIYAQLLRLQKAGTKEAR
+KLLKEYGLSG
+>SA211_MHAAABBN_01881
+MTSLLRILRFAPQLHRLYLGIAVSSVLAAVLALATPFLIGAATDRIVAAVAGETDVAEAVTAVTWLAVAFLAVEVATTLV
+VSVGGYWGDVMAARMRTILSTRYFEQLLHLPQRYFDTAITGRVVNRLNRTINEITQFLQFFANNAFTMLVTTAAMLVITA
+FYWWPLAILLAVVFPVYMWLTARTSAKWQVWEGEKNTEVDVASGRFAEVVSQMSVVRAYNRQDHELTGFRDRFLRTVEIT
+RQQSRFWHGMDAGRRLALNVAFGAMYLIVFVRTAQGLFSVGDMVILLQLMNMARQPIFSMSFLVDSAQRAVAGSKDYFEV
+LAEERERAGGAALAAASASAESA---------------GADAPRVPAEPRADVVP-----GAP-DVPAD--VPAVRFDEV
+SFAYDADASRPVLDRVSFDIPRGARVALVGESGGGKSTIAHLLLGLYPVTSGRIEVFGQDVAGLDLAVLRGRIATVFQEP
+SLFSGTVRENIAYADPDASDERVRAAAEAAYAHRFVEAFDDGYEQVIGERGLRLSGGQKQRIAVARAVLKDAPILVLDEA
+TSALDTKSERLVQAALEELMVGRSSLIVAHRLSTIASVDRIVTLRGGQVQEIGTPAELAESGGIYAQLLELQRAGTQEAR
+KMLKEYGLSG
+>TT9_LFPAFLNI_02112
+MTSLLRILRFAPQLHRLYLGIAVSSVLAAVLALATPFLIGAATDRIVAAIAGETGVAEAVTAVTWLAVAFLAVEVATTLV
+VSVGGYWGDVMAARMRTILSTRYFEQLLHLPQRYFDTAITGRVVNRLNRTINELTQFLQFFANNAFTMLITTAAVLVITA
+FYWWPLAVLLAVVFPVYMWLTARTSAKWQVWEGEKNTEVDIASGRFAEVVSQMGVVRAYNRQEQELSGFRDRFLRTVGIT
+RQQSRFWHGMDAGRRLALNAAFGAMYLIVFVRTAQGLFSVGDMVILLQLMNMARQPIFSMSFLVDSAQRAVAGSKDYFEV
+LAEERERAGGAVLAVAS----------------------ADAPRVPAEPRADVVA-----GAP-DVPAD--VPAVRFDEV
+SFAYDADASRPVLDRVSFDIPRGAKVALVGESGGGKSTIAHLLLGLYPVTSGRIEVFGQDIAGLDLAALRGRIATVFQEP
+SLFSGTVRENIAYADADASDERVRAAAQAAYAHRFVAAFDDGYDQVIGERGLRLSGGQKQRIAVARAVLKDAPILVLDEA
+TSALDTKSERLVQAALDELMVGRSSLIVAHRLSTIASVDRIVTLRAGRVEEVGSPAELAESGGIYAQLLELQRAGTQEAR
+KMLKEYGLSG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000466.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000466.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b8f225aa69805b0d66a1c40a74b6d425a7b410d7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000466.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00586
+M-----------TATP-----ELPDFVPASNQGGDPAVYEVENAALDREGTLWAALQEAA
+PWAGRTLLDLGAGTGFWLPRYADAAEVIAVEPDTRLLDAARARPGGARVRRGSAERIPLA
+EASVDVVHARFAYFFPHPQWDVRPGLEEVARVLRPDGALVVIDNDTERGEFAELLVRSDA
+AADQGQDTYARRWWADVGAETREVMSSWTFDTRADLEAVLRLEFPAELAEEWLAAHPEAT
+SLTYGYLLHVWRPRG
+>AS2_ACLBLIBL_00695
+M--------------------ELPDFRPSGNQGVDPALYEIENAAMDREGALWAALQEAA
+PWAGRTLLDLGAGTGFWLPRYADAAETIAVEPDARLLGAARARPGGARVLYGSAEQIPLP
+EASVDVVHARFAYFFPHPHWDVRPGLDEVTRVLRPGGALVVIDNDTERGQFAELLRASTN
+AAAQGQDTYAREWWAGVGAETREVMSSWTFDSRADLEAVLRLEFERGVADAWLAEHPAAT
+SLSYGYLFHVWR---
+>KBS0714_MOLHKGIG_02088
+M---CVRLPDMTQSTPGGPATDLPDFRPSGNQGVDPALYEIENAAMDREGALWAALQEAA
+PWTGRTLLDLGAGTGFWLPRYADAAETIAVEPDARLLGAARARPGGARVLYGSAEQIPLP
+EASVDVVHARFAYFFPHPRWDVRPGLDEVTRVLRPGGALVVIDNDTERGQFAELLRASTN
+AAAQGQDTYAREWWAGIGAETREVMSSWTFDSRADLEAVLRLEFERGVADAWLAEHPAAT
+SLSYGYLLHVWR---
+>SA211_MHAAABBN_01793
+M---CVRLPDMTQSTPGGPATDLPDFRPSGNQGVDPALYEIENAAMDREGALWAALQEAA
+PWTGRTLLDLGAGTGFWLPRYADAAETIAVEPDARLLGAARARPGGARVLYGSAEQIPLP
+EASVDVVHARFAYFFPHPRWDVRPGLDEVTRVLRPGGALVVIDNDTERGQFAELLRASTN
+AAAQGQDTYAREWWAGIGAETREVMSSWTFDSRADLEAVLRLEFERGVADAWLAEHPAAT
+SLSYGYLLHVWR---
+>TT9_LFPAFLNI_02027
+MEGGCVRLPGMTQSTPGGPATGLPDFRPSGNQGVDPALYEIENAAMDREGALWAALQEAA
+PWAGRTLLDLGAGTGFWLPRYADAAETIAVEPDVRLLGAARARPGGARVLYGSAEQIPLP
+EASVDVVHARFAYFFPHPRWDVRPGLDEVTRVLRPGGALVVIDNDTERGQFAELLRASTN
+AAAQGQDTYAREWWAGVGAETREVMSSWTFDSRADLEAVLRLEFERGVADAWLAEHPAAT
+SLSYGYLLHVWR---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000467.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000467.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9effc67fc80b989de3cb61546135e124c6039d0f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000467.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_00593
+MWTVALSQLRAQPRRYVSLVLAILIGTMFLAASFLVSASAQATLRTTLGNTYSAADLVVLPEPSDHADEDPTAAFPG---
+--LAGTPAEPGALGRVDGVEEAYATQ--FTWAGGSAGGTEFTATLLPVPGDVSLLPVTLTEGAFPAADDARGVTLDTGTA
+ERTGVAVGDEIALTGAPGAGGET----ATVVGLTTRSPDPTLSSGAQIWAAAPVIAAVNPPQDGEAGGSGAYSPHVLLRL
+TDGADRDAVADAAAAVLAQEGVAASVTTPDEAVRDTLAEAGGGTDVFGWVLGGFAALALLVTALVIGNTFQVLVAQRTRD
+LALQRTLGSTAGQVRGSVLTEAVVVGLVGSVLGVALAVVGLLAGVAFVRSAFDLPTLTFGMDPAGLAITVVVGVLVTLVA
+ALSPAVAATRVSPLQALRPREEVTVASRVGVVRTVVGAVLAVGGTALMLWGAFRPEPLTAVGGGALSFIGVLLLATLFVP
+AAVRGAAVLARPAGVPGRLAGLNATRHRSRTAATAAALLVGTTLVALFLTGGRTAQEQTALALDTAYPVDLVLSLPADGD
+AARAAEAVAARDDVAAVALALPVGATENGSPVLATPGADLRKVVAELPDGED-GLGDPGTAFVPGWVDEDTVTATVAGTE
+QTFSAVRAGDLSSGVY-------------VEADSLRAAGWDGSPLATDGVEVPGQLLVALAGDVPVDRLQALSEDITAAA
+GEGASIIDGGAPTRAVYAQVIDVMLWIVVGLLAVSVLIALIGVANTLSLSVIERTRENALLRALGLPRGGLRGMIAIESV
+LIAAVAALLGCVLGVFYGWAGSQLILGELVETVGRGGT-VLPTIPWLELALVVGVAAVAGLAASLLPARRAARLSPVAGL
+ATV
+>KBS0714_MOLHKGIG_02164
+MWTVALSQLRTQPRRYVSLVLAILIGTLFLAASFLVSSTAQATLRATLGSTYAGADLVVLPGGSEDVSD-----------
+--LAGTGAEPGPLARLDGVEEAYALR--MAWATARAADAEFGTTVMPLPRDPALAGLTVTAGTLPAADDARGVTLDAQTA
+DRHGVAVGDVVTLAGESGPAPATTPLDAVVTGLTQPSPDPMLSGQAQVWASSAALTAVQ-GQDGEAG----FTPHLLLRL
+ADGADVPAVAEAARAEAAAAGVDVDVATPDEAVRSAVTQLSGGTDLLGWVLGGFAALALLVTALVIANTFQVLVAQRTRD
+LALLRTIGSTTAQVRASVLTEAAVVGVVGSVLGAGLAVAIVAGVAAAARAMLDLPFLTFGLHPAGLAVSVAVGVAVTVLA
+ALAPAVAATRVAPLEALRPKDEVTAGSRGGRVRAAIGLVLAVGGTALMLGGVSVREPVSAIGGGALCFVGVLLLARLFVP
+AAVRGAAVLARPAGVPGHLAGLNAVRHRSRTAATAAALLVGTTLVALFLTGGRTAQEQTALALDTAYPVDLVVQLPADAD
+PARAAEAVAATEDVQAVALATPVGTTENGSPVLATPAADLRAVVARLPEGVT-GLGDPGTALVPDWVEADPVRAEVAGAA
+QTFAPVRAGSLSSGVY-------------VAAEPLREAGWDGAA----DAAVPGQLLVALDPGVPVDRLQGLSEDVTRAA
+GDGAAVIDGGAGERALYARIIDAMLGIVVALLAVSVLIALIGVANTLSLSVIERTRENALLRALGLTRGGLRGAIAIEAV
+LIAAVAAVLGCALGVCYGWAGAQLVLADLSATAGAGTA-VRPVVPWLELGLVVAVAALAGLAASLLPARRAARLSPVAGL
+AAV
+>KD337_NAFOICDF_00516
+MWTVALSQLRARRRRYASVVLAVLIGTMFLAASFLVASTAQATLRTTLGSVYAGADLVIQPEDDPETSADASGPPPGQRL
+AALAGTPETPGALARLDDVAEAWAPTPGFAEAAAPGGGTPRPAAVIPAPAHPDLLGVRAVAGALPDPADARGVAVDEETA
+RALGVGVGDELPLTGEP----TRAPVRATVTGLTSVSPDPMLSSQAQVWASRPVAQDL--APDGQVP----YTTAVLLRL
+APGADREAVAEAAARALHDDGVPAAVQTPDQAVRDQLASLSGGTDLLGWVLGGFALLALVVTALVIANTFQVPVAQRTRE
+LALLRAVGAEARQVRGAVLLEAVATGLTGAVAGVVLAVGLTAAVVAVARGALGADALTLGVDWLPLAGAVALGTAVAAVA
+ALGPARAATRVAPVQALRPVDEAPVRSRVGLVRAGLGLLLAVGGAALMWWGAWGSAFAAALGGGVLSFLGVLLLARLFVP
+GAVRAAAVLARPAGVPGRLAGLNAVRHRRRTAATASALLIGTTLVALVLTGGRTAQIRLDALLDEEYPVDLVVSVPAGGD
+LAAATRALGAVDGVGSVAAASPVGATVNGSPAYAVEADALRSVVAALPDGQDRALGDGASVLVPAWAGA-TTEVVVDGRV
+SGLASVRGSGLTTGVFLTPETAEWVRRHGVAADAGTAS--DAAGPAAEDQAVAGLVLVAAADDVSVNRLQEMSAALTAAA
+GAGASIVDGGAAERAVYAQIIDALLWIVVGLLAVSVLIALIGVANTLSLSVIERTRENALLRALGLTRGGLRGMIAVEAV
+LVAGVAAVLGCGLGVLYGWAGSQLVLGQLVAQLGEDRALVWPEVPWAELALVVAVAAVAGLLASLAPAGRAARLSPVEGL
+ATV
+>SA211_MHAAABBN_01878
+MWTVALSQLRTQPRRYVSLVLAILIGTLFLAASFLVSSTAQATLRATLGSTYAGADLVVLPGGSEDVSD-----------
+--LAGTSAEPGPLARLDGVEEAYALR--MAWAAARAADAEFGAAVMPLPRDPALAGLTVTAGALPAADDARGVTLDAQTA
+DRHGVAVGDVVALASESGPDSTTTPVDAVVTGLTQPSPDPMLSGQAQVWASPAALTAVQ-GQDGEAG----FTPHLLLRL
+ADGADVPAVAEAARAEAAAAGVDVDVAAPDEAVRSVVTQLSGGTDLLGWVLGGFAALALLVTALVIANTFQVLVAQRTRD
+LALLRTIGSTTAQVRASVLTEAAVVGVVGSVLGAGLAVAIVAGVAAAARAMLDLPFLTFGLHPAGLAVSVAVGVAVTVVA
+ALAPAVAATRVAPLKALRPRDEVTAASRGGRVRTAIGLALAVGGTALMLGGVSVREPVSAIGGGALSFVGVLLLARLFVP
+AAVRGAAVLARPAGVPGRLAGLNAVRHRSRTAATAAALLVGTTLVALFLTGGRTAQEQTALALDTAYPVDLVVQLPADAD
+PARAAEAVAATADVQAVALATSVGATEDGSPVLATPAADLRAVVARLPEGVT-GLGDPGTALVPDWVDTDQVRGQVAGAE
+RTFVPVRAGSLSSGVY-------------VAAEPLREAGWDGAA----GAAVPGQLLVALDPGVPVDRLQGLSEDVTRAA
+GTGAAVIDGGAGERALYARIIDAMLGIVVALLAVSVLIALIGVANTLSLSVIERTRENALLRALGLTRGGLRGTIAIEAV
+LIAAVAAVLGCALGVFYGWAGAQLVLADLSATAGAGTA-VRPAVPWLELVLVVAVAALAGLAASLLPARRAARLSPVAGL
+AAV
+>TT9_LFPAFLNI_02109
+MWTVALSQLRTQPRRYVSLVLAILIGTLFLAASFLVSSTAQATLRATLGSTYAGADLVVLPGGSEDVSD-----------
+--LAGTSAEPGPLARLDGVEEAYALR--MAWAAARAADAEFGAAVMPLPRDPALAGLTVTAGALPAADDARGVTLDAQTA
+DRHGVAVGDVVALASESGPDSTTTPVDAVVTGLTQPSPDPMLSGQAQVWASPAALTAVQ-GQDGEAG----FTPHLLLRL
+ADGADVPAVAEAARAEAAAAGVDVDVAAPDEAVRSVVTQLSGGTDLLGWVLGGFAALALLVTALVIANTFQVLVAQRTRD
+LALLRTIGSTTAQVRASVLTEAAVVGVVGSVLGAGLAVAIVAGVAAAARAMLDLPFLTFGLHPAGLAVSVAVGVAVTVVA
+ALAPAVAATRVAPLKALRPRDEVTAASRGGRVRTAIGLALAVGGTALMLGGVSVREPVSAIGGGALSFVGVLLLARLFVP
+AAVRGAAVLARPAGVPGRLAGLNAVRHRSRTAATAAALLVGTTLVALFLTGGRTAQEQTALALDTAYPVDLVVQLPADAD
+PARAAEAVAATADVQAVALATSVGATEDGSPVLATPAADLRAVVARLPEGVT-GLGDPGTALVPDWVDTDQVRGQVAGAE
+RTFVPVRAGSLSSGVY-------------VAAEPLREAGWDGAA----GAAVPGQLLVALDPGVPVDRLQGLSEDVTRAA
+GTGAAVIDGGAGERALYARIIDAMLGIVVALLAVSVLIALIGVANTLSLSVIERTRENALLRALGLTRGGLRGTIAIEAV
+LIAAVAAVLGCALGVFYGWAGAQLVLADLSATAGAGTA-VRPAVPWLELVLVVAVAALAGLAASLLPARRAARLSPVAGL
+AAV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000470.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000470.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e836c941970eb37dc43c42c9c022fbd5d28cea7d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000470.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_00599
+MNPLHRIDQWMRAHPVRTDVLVSVLLFAVLGLTPWVMLGSLAGPTPG--SIVASILIALA
+LIAPWAFRRVRPVASAAAVAAAAVAHLVAGPEFSLALVLVPMTVYNLAANAPRWASFTGL
+VAALLGGVANGIRVGLFPDPAMRPDG--VYEPVDPSLEALLVMVFGCAAVVLTAWAFGDV
+VRHRRLAVRALEDRNRRLETMALQERRLAASDERNHIAREMHDIVAHSLQVIISQADGAR
+YAAAAKPELAVATLDTIGLTGRAALADMRQLLGVLRETGETVAGVPGVAPDDGAPGPAAG
+ASDEGAAGAADEGAAGAADEGAAGAGTAGAGTTPGAGRTRLPADVASRDGRGARQPPGHR
+PQPTLADVPALIETMRLSGLEVSLLETGAPRRPLPPGGELAAYRIVQEALTNTLRHGGPQ
+ASAFLTLAWTGRGLDVQSDDDGRGADADPGTRGSGHGLRGVAERVALFGGTVETGPRAGA
+GYRVSAHLPYSAV
+>KBS0714_MOLHKGIG_02159
+MNPLRRLDQWTRLHPVRTDVMAAAALFTVLVALPWIALGPMVAPDPQGRQTAVSLLAGAG
+MVLPWAVRRVRPVASAAVVTAAAVLHLLAGPEFSLSLLMVPLTVYNLAANAPRSVSVAGL
+LLGLVGGVANGVKVWLFPAQFVTPDGLTVRSPAEPL--AMVIMAIGCGLMVLTAWAFGDV
+VRNRRLTVRALEDRAHRLEVQSRQERELAAADERSHIAREMHDIVAHSLQVIISQADGAR
+YAAAAKPALAVTALETIGQTGRSALADMRQLLGVLRETGETVAGVPGV-TDDDARRPAA-
+----------------------------------DV--------VASPDGRGTRLPPGRR
+PQPRLADLPALVETMRLSGLEVSLLETGTPRRTLPAGGELAAYRIVQEALTNTLRHGGPD
+ADAFVTLAWTAHGLDLQIDDDGCGAAADPATRGSGQGLRGAAERTALFGGTLETGPRVGA
+GYRVSAHLPYSAV
+>KD337_NAFOICDF_00521
+MNPLRRLDVLLRRHPVRTDVTAAVLLTLVLVLAPLVMLGGGVG-SPAAWQTAGTVVAGLL
+MTGAWGLRRVRPVAAAGVTVAGALLHLAVGPEFTIALAMVPATVYNLAAIGPRWASLAGL
+ATGLAGGLANGLKVWLFPPRFTTPDGVQVQSPAEPV--AMVVMAVLCGMAVLTAWAFGDV
+VRNRRLAVQALEDRARRLETQALQERELAAADERSHIAREMHDIVAHSLQVIISQADGAR
+YAAAAKPELAVETLETIGQTGRSALADMRQLLGVLRGPAEPTGG-----PDRARRDPAA-
+-------------------------------------------------------PDGHR
+APPGLADLPALFQTLRLSGLEISLLEQGSPRRDLPAGGELTAYRTVQEALTNTLRHGGEG
+AHAFLTLRWTARGLEIQADDDGR-SQADAETTGSGQGLRGIAERVALFGGTMEAGPRVGA
+GWRVWAELPYADV
+>SA211_MHAAABBN_01872
+MNPLRRLDQWTRLHPVRTDVMAAAALFTVLVALPWIALGPMVAPDPQGRQTAVSLLAGAG
+MVLPWAVRRVRPVASAAVVTAAAVLHLLAGPEFSMSLLMVPLTVYNLAANAPRSISVAGL
+LLGLVGGVANGVKVWLFPAQFVTPDGLTVRSPAEPL--AMVIMAIGCGLMVLTAWAFGDV
+VRNRRLTVRALEDRAHRLEVQSRQERELAAADERSHIAREMHDIVAHSLQVIISQADGAR
+YAAAAKPALAVTALETIGQTGRSALADMRQLLGVLRETGETVAGVPGV-TDDDARRPAA-
+----------------------------------DV--------VASPDGRGTRLPPGRR
+PQPRLADLPALVETMRLSGLEVSLLETGTPRRTLPAGGELAAYRIVQEALTNTLRHGGPD
+ADAFVTLAWTAHGLDLQIDDDGCGAAADPATRGSGQGLRGAAERTALFGGTLETGPRVGA
+GYRVSAHLPYSAV
+>TT9_LFPAFLNI_02103
+MNPLRRLDQWTRLHPVRTDVMAAAALFTVLVALPWIALGPMVAPDPQGRQTAVSLLAGAG
+MVLPWAVRRVRPVASAAVVTAAAVLHLLAGPEFSLSLLMVPLTVCNLAANAPRSVSVAGL
+LLGLVGGVANGVKVWLFPAQFVTPDGLTVRSPAEPL--AMVIMAIGCGLVVLTAWAFGDV
+VRNRRLTVRALEDRAHRLEVQSRQERELAAADERSHIAREMHDIVAHSLQVIISQADGAR
+YAAAAKPALAVTALETIGQTGRSALADMRQLPGVLRETGETVAGVPGV-TDDDTRRPADP
+APDRADP----------------------TGTRPDV--------VAAPDGRGARLPPGRR
+PQPRLADLPALVETMRLSGLEVSLLETDTPRRALPAGGELAAYRIVQEALTNTLRHGGPD
+ADAFVTLAWTARGLDLQIDDDGRGAAADPATRGSGQGLRGAAERTALFGGTLETGPRVGT
+GYRVSAHLPYSAV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000473.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000473.fa
new file mode 100644
index 0000000000000000000000000000000000000000..11d08f6de04ace84ddf0b63a4087cad6e23449df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000473.fa
@@ -0,0 +1,80 @@
+>AS2_ACLBLIBL_00609
+-----------------------------MDGVVTDTAGVHAQAWKELFDEALPAVGALPANAAAVAADPEALRPFDAAA
+DYLHHVDGRPREDGVRTFFHSRGLRVPEADSPEAATTPQLTVLALAERKQGYFEQVLARDGVRVFPEAQDLLEKLRAKGV
+PVALVTSSKNSRAVLGAGGVLDFFPVIVDGHTAIERGLPGKPDPAMFWEAARELGVDVADAMVLEDAVSGVKAAADGRFG
+LVIGVDRE-PDLGKGRLKGAGAHLVVQDYGTLCLEQRTTTPFDPAWVLRWDEFDPASEGTREVLCTLANGYWGTRGAVPG
+TRISDVHYPGTYMAGVFNRLTSMVQGRAVDTEHMVNIQDWTPLVVTPRGGRPLLPGEETLVDFSQEMDLRRGVLSRTMAF
+EDEQGRRTSLHTRQFTSLANRHLAAIELTVVAENWTGELTVRSTIEGRVANLNVSDDRTLANQHLEPSQAREIDGETVLL
+ETTTSQSRIDIAVATRTRQMAPVGHHEPIRRPVDGSDLRVGQDIRLHVEEGVPLVIEKIAAVATSHDHAQASVWESAVKD
+VQRANNFRNLLTLHEQRWGTNWDRFSVRIDIAEPYRHQRRSAAA-AEGAEYAPPVVDAGRSASVGSAVPMGKDGASLRQQ
+LALNLHTFHVLQTAYGRRRDLDASVGARGLHGEGYRGHIFWDEIYVYPMLTLRRPEITRGILMYRYRRLNEARANAQAEG
+WAGAMYPWQSGADGSEETPTELWNPRSRMWMPDNSHNQRHVSLDIAYSVLRYIEITKDTSFISDYGAEMLVEVSRFFMSM
+ALHNADTDRYEIHGVMGPDEFHDGYPETPGSGLRNNAYTNVLTSWVLSETARLVRWLDTLDDGLPEIMEITEEEIERWED
+VSARLTVPFFEDGEEAGILAQFEGYQDLKEFDWEAYRAKYGNIGRMDLILQAEGDATNRYKLSKQADTLMLGYLFSAEEL
+DGILRRMGYELPQEAFERMVTYYEARSTHGSTLSRLVHAWVAARTDPDRSWDLFTEALESDLSDTQGGTTREGIHLGLMA
+GTVDTVIRCYAGLETREDVVRVDPRMPSQLPGASFTIRFRQQPVQIHMRRSEVTVRAGSGMWHDVPMIIAGQEHTLSPGA
+EITVPLG
+>KBS0714_MOLHKGIG_02154
+MSQTLTPAAPQDLNARRHRLRRYRAVIFDMDGVITDTAGVHAQAWKELFDGALPAVGALPANAAVVAADPDVLRPFDAAA
+DYLHHVDGRPREDGVRTFFASRGLRVPEADAPEADAAPELTVLALAERKQGYFEQVLERDGVRVFPEAQDLLERLRAKGV
+PVALVTSSKNSRAVLTAGGVLDFFPVIVDGNTAVERGLPGKPDPAMFWEAARELGVDVADAMVLEDAVSGVKAAADGRFG
+LVIGVDRE-PELGKGRLKAAGAHLVVQDYGTLHLEDRTTTPFDPAWVLRWDHFDPASEGTREVLSTLANGYWGTRGAVPG
+TRISSVHYPGTYMAGVFNRLTSMVQGRVVETEHMVNIQDWTPLVVTPRHGRPLLPGEENLVEYGQEMDLRRGVLSRTMTF
+EDEQGRRTTVHTRQFTSLANRHLAAIELTVVAENWSGDLTVRSKIEGRVANLNVSDDRTLANQHLEPVQAREIDGETVLL
+ETATNQSGIHVAVATRTRQVAPVGHHEPIRRPVDGSDLVVGQDILLHVDEGVPLVLEKVAAVATSHDHASASVWESAVKD
+AQRAQNFRNLLTLHEQRWGTNWDRFSVRIDLAEPYRHHRRSTAA-ETGGEYAPPVVAAGHSAPVGSAVPMGKDGASLRQQ
+LALNLHTFHVLQTAYGRRRDLDASVGARGLHGEGYRGHIFWDEIYVYPMLTLRRPEITRGLLMYRYRRLNEARANAQAAG
+WAGAMYPWQSGADGSEETPTELWNPRSRMWMPDNSHNQRHVSLDIAYSVLRYIEITKDTSFISDYGAEMLVEISRFFMSM
+TLHNAVTDRYEIHGVMGPDEFHDGYPETPGSGLRNNAYTNVLTSWVLAETARLVRWLDTIDDGLPELMEISEEEIERWEE
+VSTRLTVPFFEEGEEAGILAQFEGYQDLLEFDWEAYRAKYGNIGRMDLILQAEGDATNRYKLSKQADTLMLGYLFSSEEL
+DRILRRMGYELPQEAFERMVTYYEARSTHGSTLSRLVHAWVAARTDPDRSWDLFTEALESDLSDTQGGTTKEGIHLGLMA
+GTVDTVIRCYAGLETRDDVVRLHPRMPAQLPGARFTIRFRQQPVVIHMTQREVTVAAGEGMWHDVPMIIAGREHTLSPGE
+KLTVPLD
+>KD337_NAFOICDF_00533
+MTQTLTPVDQQDRNARRHRLRRYRAVIFDMDGVITDTAGVHAAAWKELFDQALPAVGALDANRAAVAADPGVLRPFDPEA
+DYLHHVDGRPREDGVRAFFASRGLTVPEVD--DADAPVDLTVLALAERKQGFFEKVLERDGVRVFPEATDLLEKLRDKGV
+PVALVTSSKNSRAVLTAGGVLDYFPVIVDGHTAIERGLPGKPDPAMFWEAARELGVDVADAMVLEDAVSGVKAAADGRFG
+LVIGVDREHGEGGKPRLKDAGAHIVVKDYGTLRLADRTTAPFDAAWVLRWDHFDPATEGTREVLCTLANGYWGTRGSIPG
+TRISDVHYPGTYLAGVFNRLTSMVQGRQVETEHMVNMQDWTPLQVIPAGGRPLIPGEETLLDYHQEMDLRRGVLSRSMRF
+EDAQGRITTLHTRQFQSLADRHLGAIELTVEAENWSGDLVVRTLVDGRVANLNVSDDRTLANQHLEPVAAREVDGETLLL
+ETVTSQSRVHVAVAARTRQMAPKGHHQPIRRPVEGSDLMVGQDIHLHVEQDVPLVLEKVAAVANTHDHALASVDASAIKK
+VQRAQNFRNLLTLHEQRWGMNWDRFSVRIDLAEEHRNQRRSTAVLAEGEEFEAPVFEAGRSASVGSAATMGKDGASLRQQ
+LALNLHTYHVLQTAFGKRRDLDASVGARGLHGEGYRGHIFWDEIFVYPMLTLRRPEITRGILMYRYRRLNEARANAQAEG
+WAGAMYPWQSGSDGREETPAELWNPRSHMWMPDNSHNQRHVSLDIAYSVLRYIEITKDASFISDYAAEMLVEISRFFTSM
+TLHNAETGRYEIHGVMGPDEFHDGYPETPGSGLRNNAYTNVLTSWVLSETARLLRWLDTLDDGLPEVMEVTEEEIARWEE
+IAAKLTVPFFTEGPEAGILAQFEGYQDLLEFDWEGYRAKYGNIGRMDLILQSEGDATNRYKLSKQADTLMLPYLFSGAEL
+EQILGRMGYELHQEALERTVEYYEARSTHGSTLSRLVHAWVAARTDPDRSWDLFTEALESDLSDTQGGTTREGIHLGLMA
+GTVDTVIRCYSGLETRDDVVRLDPRLPRQLPGARFTIRYHQQPVVIHMTQRDVTVTAGEGMWHEVPMVIAGREHTLEPGG
+EVTVALG
+>SA211_MHAAABBN_01867
+MSQTLTPAAPQDLNARRHRLRRYRAVIFDMDGVITDTAGVHAQAWKELFDGALPAVGALPANAAVVAADPDVLRPFDAAA
+DYLHHVDGRPREDGVRTFFASRGLRVPEADAPEADAAPELTVLALAERKQGYFEQVLERDGVRVFPEAQDLLERLRAKGV
+PVALVTSSKNSRAVLTAGGVLDFFPVIVDGNTAVERGLPGKPDPAMFWEAARELGVDVADAMVLEDAVSGVKAASDGRFG
+LVIGVDRE-PELGKGRLKAAGAHLVVQDYGTLHLEDRTTTPFDPAWVLRWDRFDPASEGTREVLCTLANGYWGTRGAVPG
+THISSVHYPGTYMAGVFNRLTSMVQGRVVETEHMVNIQDWTPLVVTPRHGRPLLPGEENLVEYGQEMDLRRGVLSRTMTF
+EDEQGRRTTVHTRQFTSLANRHLAAIELTVVAENWSGDLTVRSKIEGRVANLNVSDDRTLANQHLEPVQAREIDGETVLL
+ETATNQSGIHVAVATRTRQVAPVGHHEPIRRPVDGSDLVVGQDILLHVDEGVPLVLEKIAAVATSHDHANASVWESAVKD
+VQRAQNFRNLLTLHEQRWGTNWDRFSVRIDLAEPYRHQRRSTAA-EAGGEYAPPVVDAGHSAPVGSAVPMGKDGASLRQQ
+LALNLHTFHVLQTAYGRRRDLDASVGARGLHGEGYRGHIFWDEIYVYPMLTLRRPEITRGLLMYRYRRLNEARANAQAEG
+WAGAMYPWQSGADGSEETPTELWNPRSRMWMPDNSHNQRHVSLDIAYSVLRYIEITKDTSFISDYGAEMLVEISRFFMSM
+TLHNAVTDRYEIHGVMGPDEFHDGYPETPGSGLRNNAYTNVLTSWVLAETARLVRWLDTIDDGLPELMEISEEEIERWEE
+VSTRLTVPFFEEGEEAGILAQFEGYQDLLEFDWEAYRAKYGNIGRMDLILQAEGDATNRYKLSKQADTLMLGYLFSAEEL
+DRILRRMGYELPEEAFERMVTYYEARSTHGSTLSRLVHAWVSARTDPDRSWDLFTEALESDLSDTQGGTTKEGIHLGLMA
+GTVDTVIRCYAGLETRDDVVRLHPRMPAQLPGARFTIRFRQQPVVIQMTQREVTVAAGEGMWHDVPMIIAGREHTLSPGE
+KLTVPLG
+>TT9_LFPAFLNI_02097
+MSQTLTPAAPQDLNARRHRLRRYRAVIFDMDGVITDTAGVHAQAWKELFDGALPAVGALPANAAVVAADPDVLRPFDAAA
+DYLHHVDGRPREDGVRTFFASRGLRVPEADAPEADAAPELTVLALAERKQGYFEQVLERDGVRVFPEAQDLLERLRAKGV
+PVALVTSSKNSRAVLTAGGVLDFFPVIVDGNTALERGLPGKPDPAMFWEAARELGVDVADAMVLEDAVSGVKAAADGRFG
+LVIGVDRE-PELGKGRLKAAGAHLVVQDYGTLHLEDRTTTPFDPAWVLRWDRFDPASEGTREVLCTLANGYWGTRGAVPG
+THISSVHYPGTYMAGVFNRLTSMVQGRVVETEHMVNIQDWTPLVVTPRHGRPLLPGEENLVEYGQEMDLRRGVLSRTMTF
+EDEQGRRTTVHTRQFTSLANRHLAAIELTVVAENWSGDLTVRSKIEGRVANLNVSDDRTLANQHLEPVQAREIDGETVLL
+ETATNQSGIHVAMATRTRQVAPVGHHEPIRRPVDGSDLVVGQDILLHVDEGVPLVLEKIAAVATSHDHANASVWESAVKD
+VQRAQNFRNLLTLHEQRWGTNWDRFSVRIDLAEPYRHQRRSTAA-EAGGEYAPPVVDAGHSAPVGSAVPMGKDGASLRQQ
+LALNLHTFHVLQTAYGRRRDLDASVGARGLHGEGYRGHIFWDEIYVYPMLTLRRPEITRGLLMYRYRRLNEARANAQAAG
+WAGAMYPWQSGADGSEETPTELWNPRSRMWMPDNSHNQRHVSLDIAYSVLRYIEITKDTSFISDYGAEMLVEISRFFMSM
+TLHNAVTDRYEIHGVMGPDEFHDGYPETPGSGLRNNAYTNVLTSWVLAETARLVRWLDTIDDGLPELMEISEEEIERWEE
+VSTRLTVPFFEEGEEAGILAQFEGYQDLLEFDWEAYRAKYGNIGRMDLILQAEGDATNRYKLSKQADTLMLGYLFSAEEL
+DRILRRMGYELPQEAFERMVTYYEARSTHGSTLSRLVHAWVAARTDPDRSWDLFTEALESDLSDTQGGTTKEGIHLGLMA
+GTVDTVIRCYAGLETRDDVVRLHPRMPAQLPGARFTIRFRQQPVVIHMTQREVTVAAGEGMWHDVPMIIAGREHTLSPGD
+KLTVPLD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000474.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000474.fa
new file mode 100644
index 0000000000000000000000000000000000000000..373c77a82301f8584c87564db4997074166ead65
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000474.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00610
+MQCHHYDAGRCRSCALMGVPYGVQLTDKDAAVCARLDAAVPAEA-WLPPQASAESGFRNK
+AKLVATGTAAAPRLGILDPEQHPRHHDGTGHDLRDCGLYEDGMEAAFHAIAETIPAAGLE
+PYDVAARTGELKSVIVTLSPDRELMVRFVLRSAARLDALRAAVPGLRSALAGLGTPAAVV
+TANLHPEHVALPEGPDEVHLAGDPTLRMELNGIGLRLRPQGFFQTNTDVTRRLYATAAAW
+LAEAAAADGTPVHSAWDLYCGVGGFAFHLARPVAEGGAGVAEVWGLETSEDAVAAARDTA
+AELGLAGAVRFTAGDATRALSPGRREPSEALSSGKREAWDALSSGSREPSDAGAHPDDDA
+APAAMPDAVVVNPPRRGIGPELAARLQDSGVPHVLYSSCNAASLAKDLAAMPAYRARRAQ
+VFDMFPQTGHAETLVLLSRA
+>KBS0714_MOLHKGIG_02152
+MQCPHFDVGECRSCPLMGVPYARQLADKQAAVLAALADALDADTVVAEPFASAEAGFRNK
+AKLVVTGSAAAPRLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFEACAAAVTAAGLE
+PYDVAARTGELKNVIVTLSPDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAVV
+SANLLPEHVALPEGDEEIVLAGGPTLRMELNGIGLRLRPQGFFQTNTAVTEGLYATAAAW
+VAEG----GVPA-SAWDLYCGVGGFAFHLAR------AGVRDVWGMESSAEAVAAARETA
+AELGLADRARFSAGDATSALSFEKRRAPEALSFEKRR--------SR-------------
+-----PDAVVVNPPRRGIGAELADALEDSGAPTVLYSSCNPTTLAQDLARMPSYRVARVQ
+LFDMFPQTLHAEVLTLLTRR
+>KD337_NAFOICDF_00534
+MQCPHFDAGECRSCALMGVPYGAQLADKDAAVRARLAEATDARTRWEAPAASAESGFRNK
+AKLVVTGTAAAPRLGILDPRQHPRHHDGTGVDLRDCGLYEDGMEAAFHAIAGAVTAAGLE
+PYDVAARTGELKNVIVTRSPDRELMVRFVLRSADRLEALRPEVPALREALAALGTPAAVV
+TANLHPEHVALPEGPEEVHLAGDATLRMELNGIGLRLRPQGFFQTNTDITQRLYATAAAW
+LAEAAAEGGTPVERAWDLYCGVGGFAFHLARPVAEGGAGVAEAWGLEVSAEAIEAAREAA
+AELGVAERVRFTAGDATTALA--------------------APGGTR-------------
+-----PDAVVVNPPRRGIGAELAGRFEESGVPFVLYSSCNAATLATDLTAMPSYRVARAQ
+VFDMFPQTGHAETLVLLARR
+>SA211_MHAAABBN_01865
+MQCPHFDVGECRSCPLMGVPYARQLADKQAAVLAALADAVDADTVVAEPFASAEAGFRNK
+AKLVVTGSAAAPRLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFDACAAAVTAAGLE
+PYDVAARTGELKNVIVTLSPDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAVV
+SANLLPEHVALPEGDEEIVLAGGPTLRMELNGIGLRLRPQGFFQTNTAVTEGLYATAAAW
+VAEG----GVPA-SAWDLYCGVGGFAFHLAR------AGVRDVWGMESSAEAVAAARETA
+AELGLADRARFSDGDATSALSFEKRRAPEALSSKKRR--------PR-------------
+-----PDAVVVNPPRRGIGAELADALEDSGVPTVLYSSCNPATLAQDLARMPSYRVARVQ
+VFDMFPQTRHAEVLTLLTRR
+>TT9_LFPAFLNI_02095
+MQCPHFDVGECRSCPLMGVPYARQLADKQAAVLAALADAVDADTVVAEPFASAEAGFRNK
+AKLVVTGSAAAPRLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFDACAAAVTAAGLE
+PYDVAARTGELKNVIVTLSPDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAVV
+SANLLPEHVALPEGDEEIVLAGGPTLTMRLNGVGLRLRPQGFFQTNTAVTEGLYATAAAW
+VAEA----GLPA-AAWDLYCGVGGFAFHLAR------AGVRDVWGMESSAEAVAAARETA
+AELGLADRARFSAGDATSALSFEKRRAPEALSSKKRR--------PR-------------
+-----PDAVVVNPPRRGIGAELADALEDSGVPTVLYSSCNPATLAQDLARMPSYRVARVQ
+VFDMFPQTRHAEVLTLLTRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000476.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000476.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c9c60bb6dbc018e3ea63594cb51c005b88cb330d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000476.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00612
+MKPAGALALEFRADSFDHPGGLVDAGTVISWIEKAGYAVAASWAGTFVRARYMGHTQFRH
+SVPVDHRAVVQARVVHTDGADVHVQTRLLLPEVKDESGDPVVATSSLVVYSAEEDGARVT
+VPAWVPSTPGQIERDEQASRSTVARRAVERGMARLPFPSPGQAPEEMSTLAFLAPASEAT
+VGGTMNAGAILRWLDEAAAVCAARWTGHESVVAVFGGGVRFVRNILVGDLVRVDALLVNT
+TERSMQVALRVYAGRPTGVQPRLVAHSIAVMVDVSAEDKAQPVRQYVPESEGARSLQEAA
+VQLVRLRSEVGAAWTETRRSPESR
+>KBS0714_MOLHKGIG_02150
+MRPPGALALEFRADSFDHPTGLVDAGTVISWIEKAGYAVAASWAGTFVRARYMGHTQFRH
+PVPVDRRAVVQARVVHTDGAEVHVQTRLLLPEIRDDDGDPVVATSSLVVYAAEEGGVPVT
+VPVWEPSTPGQIERDEQARRSTVARRAVERGMARLPFPAPGEAPEEMSTLAFLAPNAEAT
+VGGTINAGAILRWVDEAAAVCAARWTGHESVVAVFGGGVRFVRNIHVGDLVRVEALLVNT
+TERSMHVALRVYASRRTGAESRLVAHSIAVMVDVSAEDQAQRVRQYIPESESARRLQETA
+IELVRMRSEVSAAWTEMRRSTDPR
+>KD337_NAFOICDF_00536
+MMRSGALSLDFRADSFDHPSGLVDAGTAIGWIDKVGYAVAASWSGTYVRARYMGTMQFRH
+PVPVDMRVTVQGRVVRTHGAAVHVQLRLLLPEVLDDDGRPVVSTSTLSVYYAEEDGQMLQ
+VPEWTPSTPDQIERDERARVSSVERRGIEQVMARLPFPEPGQEHEEMTTLAFIAPMAEAS
+VGGTVAAGAVMRWLDEAAGVCAARWTGHENVVAVFAGGVRFVRPVKVGDLVRVDALLVHT
+SERSMHVALRVHAGPRHQRDHRLVAHSIAVMVDVTREGRAESVRPYAPGSPAAHRLEESA
+VELVRLRSEAGAVWSD------PS
+>SA211_MHAAABBN_01863
+MRPPGALALEFRADSFDHPTGLVDAGTVISWIEKAGYAVAASWAGTFVRARYMGHTQFRH
+PVPVDRRAVVQARVVHTDGAEVHVQTRLLLPEIRDDDGDPVVATSSLVVYAAEEGGVPVT
+VPVWEPSTPGQIERDEQARRSTVARRAVERGMARLPFPAPGEAPEEMSTLAFLAPNAEAT
+VGGTINAGAILRWVDEAAAVCAARWTGHESVVAVFGGGVRFVRNIHVGDLVRVEALLVNT
+TERSMHVALRVYASRRTGAESRLVAHSIAVMVDVSAEDQAQRVRQYIPESESARRLQETA
+IELVRMRSEVSAAWTEMRRSTDPR
+>TT9_LFPAFLNI_02093
+MRPPGALALEFRADSFDHPTGLVDAGTVVSWIEKAGYAVAASWAGTFVRARYMGHTQFRH
+PVPVDRRAVVQARVVHTDGAEVHVQTRLLLPEIRDDDGDPVVATSSLVVYAAEEDGVPVT
+VPAWEPSTPGQIERDEQARRSTVARRAVERGMARLPFPAPGEAPEEMSTLAFLAPNAEAT
+VGGTINAGAILRWVDEAAAVCAARWTGHESVVAVFGGGVRFVRNIHVGDLVRVEALLVNT
+TERSMHVALRVYASRRTGAESRLVAHSIAVMVDVSAEGQAQPVRQYVPESESARRLQETA
+IELVRMRSEVSAAWTETRRSTDPR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000478.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000478.fa
new file mode 100644
index 0000000000000000000000000000000000000000..36fff3ef41fab7612a3ffafa9ec46c52d1bfd4b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000478.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_00614
+MLLERIYDEDLAQASYFIGCQAKNEAIVVDPRRDVQEYLDLAAHHGMTITHVTETHIHAD
+FLSGTRELAARTGAQIHVSGEGGEDWTYGFEGNLLHDGDVITLGNITVTAQHTPGHTPEH
+LSYLITDGAFAQAPGYYLTGDFVFSGDLGRPDLLDEAAGFQDTRFAGAKQLFRSLKEKFV
+GLPDHVQVFPGHGSGSACGKALGALPSTTVGYERTYAWWAEYVANDDEQGFVDELLDGQP
+DAHAYFARMKKQNKLGPAVLGELTPLAELTGEQAVARVAAGD-VLADTRSVDEIHAGTVP
+GALALPAKDKAATHIGWAYDPEQDDAAIILLADDQGDAEAIRSHMIRVGVDAADAFVTSL
+DGFELQPAAVISPEELQRRIDAGDVVPATADAAPGEGGLALLDVRNRTEHAEGTVPASGG
+AEAAQLNSGKVLFHQGELPKDATLVTFCQSGLRNVVAAQSLRRAGFDVVELEGSYLGWLG
+RTR-------A
+>AS2_ACLBLIBL_02660
+MLLERIYDEDLAQAGYFIGCQAKGEAVVIDARRDIADYLALAAKHGMRIVAVTETHIHAD
+YLSGTRELAAAVGAEVYVSGEGGADWQYGFDARRLYDRDTITIGNITIQARHTPGHTPEH
+LVFLVTDGAFASEPGYLISGDFVFAGDLGRPDLLDEAAGGVDTRFEGARQLFTSLREVFL
+TLPDHVQVHPGHGSGSACGKALGALPSTTVGYERANAWWSRHLAADDEQGFIEELLDGQP
+DAHAYFARMKKQNREGPAVLGERGPVPELAVAEVARRLEADETTFVDTRPPAQAHQGTVA
+GSLNIPDGSKTATYAAWAYDPEADSRPLVLLAEDQTAAQAIADRLLRVGIDQTAGYVTTI
+DGLPRFVPPLIEPAEL-----------------AGFDAALLLDVRQRGEYAAGHIPG---
+--ATQLSAARVLWHKDELPRSGTIVTYCQSGMRNTVAASALRRAGHAVVELDGSYNAWRA
+WQETTSETALA
+>KD337_NAFOICDF_00538
+MLLERIYDEDLSQASYFIGCQAKNEAIVVDPRRDVQEYLDLAAHHGMTITHVTETHIHAD
+FLSGTRELAARTGAQIHLSGEGGEDWTYGFEGHLLHDGDTIQLGNITVQAMHTPGHTPEH
+LSYLVTDGAFAAAPGYYLTGDFVFSGDLGRPDLLDEAAGLQDTRFAGATQLFQSLKEKFV
+NLPGHVQVFPGHGSGSACGKALGALPSTTVGYESTYAWWAEYVENDDEQGFVGELLDGQP
+DAHAYFARMKRQNKQGPAVLGELTPLAELTGEQAVARVSAGD-VLADTRPVDQIHAGTVP
+GALALPAKDKTATHIGWAYDPESDDAAIILLADAQDDAEQIRAHLIRVGVDAADAFVTSL
+DAFDLRPTAVISPEELERRIQDGGVVPATADAAPAEDGLALLDVRNRTEHADGTVPASDD
+AEAAQLSAGKVLFHQDQLPKEATIVTFCQSGLRNVVAAQALRRAGFDVVELDGSHLGWLG
+RSQ-------A
+>SA211_MHAAABBN_01860
+MLLERIYDEDLAQASYVIGCQAKNEAMVVDPRRDIQVYLDLAAKNGMTITHVTETHIHAD
+YLSGTRELAHATGAQIHLSGEGGEDWAYGFEGNLLKDGDTVTLGNITVEAVHTPGHTPEH
+LSFLVTDGAFADAPGYMLTGDFVFSGDLGRPDLLDEAAGGVDTRFEGAQQLFASLKAKFL
+TLPDHVQVFPAHGAGSACGKALGALPSTTVGYERKYAWWSDYLKNDDEQGFIDELLDGQP
+DAHAYFARMKRQNKQGPAILGELPELEELDAGGVQATLAEGA-VFADTRGVDEILAGTVP
+GALAFPSRGKVATHAGWAYDPESDDAALVLLAEDREDAHTMRDHMIRVGVDAAAAFTTSV
+DGLTLEPVPTVQADELRSRIEAGEV--------GAEQDTVLVDVRNKTEFSHGTV-----
+ADARQLNAGKVLFHQEELPKDKTLVTFCQSGLRNIVAAQALRRAGFDVIELEGSYAAW--
+-QQ-------S
+>TT9_LFPAFLNI_02090
+MLLERIYDEDLAQASYVIGCQAKNEAMVVDPRRDIQVYLDLAAKNGMTITHVTETHIHAD
+YLSGTRELAHATGAQIHLSGEGGEDWAYGFEGNLLKDGDTVTLGNITVEAVHTPGHTPEH
+LSFLVTDGAFADAPGYMLTGDFVFSGDLGRPDLLDEAAGGVDTRFEGAQQLFASLKAKFL
+TLPDHVQVFPAHGAGSACGKALGALPSTTVGYERKYAWWSDYLKNDDEQGFIDELLDGQP
+DAHAYFARMKRQNKQGPAILGELPELEELDAGGVQATLAEGA-VFADTRGVDEILAGTVP
+GALAFPSRGKVATHAGWAYDPESDDAALVLLAEDREDAHTMRDHMIRVGVDAAAAFTTSV
+DGLTLEPVPTVQADELRSRIEAGEV--------GAEQDTVLVDVRNKTEFSHGTV-----
+ADARQLNAGKVLFHQEELPKDKTLVTFCQSGLRNIVAAQALRRAGFDVIELEGSYAAW--
+-QQ-------S
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000480.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000480.fa
new file mode 100644
index 0000000000000000000000000000000000000000..072ccd615600d7b6fc07d55522f93c0ca82e555a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000480.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00621
+MLWTLLRRPRRPDLGAVTAVVVLQLISTLAMLYLPSLNARIIDEGVARGDTDRIWDLGLVMLGVALVQVVAAIVAVWFGA
+KVAMGIGRDLRRAVYTRVDGFSAEELGRFGAPTLITRGTNDVNQVQMVTLMGLNFMVAVPIMAIGGIIMAVREDPGLSWL
+VWVSVPVLLVIVAWIVAKLMPLFQRMQDDIDRVNGVMREQVMGIRVVRAFVREPHESARFSGANAALTRTSVLIGRLFVL
+LGPVITMILHLATAAVLWFGGHRVADGLVEVGALTAFMQYLLQILMAVMMGTFMMMMLPRAVVSAGRIGEVLDTVPTLAE
+PVNPVTPADPRGAVELRDVTFAYPGAEAPVLDGVSFTVAPGSTTAIIGATGSGKSTLVNLIPRLYDATSGQVLIDGVPVT
+ELARAELTRAVALVPQKPYLFSGTVAENMRFGAPEATEEEIWAALETAQAAGFVRERTTGEGETAAGGLDSRLSQGGTDV
+SGGQRQRLSIARALVARPRILLFDDSFSALDVATDARLRGALDATAAGTTRIVVAQRVATITEADQIIVLDEGRVVGRGT
+HAELLAGNETYKAIVDSQVREEELA
+>KBS0714_MOLHKGIG_02148
+MLWTLLRRHGRRYRGDVAAVVVLQLISTLAMLYLPSLNARIIDEGVARGDTARIWDIGLVMLGVALVQVVAAIAAVWFGA
+KASMGVGRDLRRAVYTRVDAFSAEELGRFGAATLITRGTNDVNQVQMLTLMALNFMVAVPIMAVGGIVMAIREDPGLSWL
+VWVSVPVLLVIVAWIVARLMPLFQQMQDNIDDVNGVLREQIQGIRVVRAFVRERHETRRFTDANAALTETSVRIGRLFVL
+LGPVITMILHLATAAVLWFGGQRVDAGLVQVGALTAFMQYLLQILMAVMMGTFMMMMLPRAVISARRIGEVLDTVPTLGE
+PVRPVTPERRDGAVELRHVTFQYPGAEAPVLDDVSFAVAPGTTTAIIGSTGSGKSTLISLLPRLYDATSGEVLVDGVPVT
+DLARAELTEAVALVPQKPYLFSGTVRENMQFGAPDASDERIWAALETAQAADFVRARTTGKGEAAASGLDSRLSQGGTDV
+SGGQRQRLSIARALVAEPRILVFDDSFSALDVTTDARLRAALDRAAAGVTRIVVAQRVATITDADQIIVLDEGRVVGRGT
+HAELLADNQTYREIVDSQLTAEDVA
+>KD337_NAFOICDF_00546
+MLWTLLRRHLNPYAGAVTAVIVLQLVSTLAMLYLPSLNARIIDEGVARGDTARIWDLGLVMLGVAAVQVVAAISAVWFGA
+KASMGVGRDLRRAVYTRVDGFSAEELGRFGAATLITRGTNDVNQVQMLTLMALNFMVAVPIMAVGGIVMAVREDAGLSWL
+VWVSVPLLLVIVGFIVSRLMPLFQRMQDDIDAVNGVMREQVMGIRVVRAFVRQDHEAARFTDANQALTDTSVRIGRLFVL
+LGPVITMVLHLATAAVLWFGGHRVDQGLVQIGSLTAFMQYLLQILMAVMMGTFMMMMLPRAVISARRIGEVLDTAPTLGE
+PVHPVTPERREGRVELRDVTFAYPGAEAPVLDGVSFTAEPGTTTAIIGATGSGKSTLVNLIPRLYDATSGQVLVDGVPVT
+DLARAELTDAVAIVPQKPYLFSGTVRDNMRFGAPEATDEQIWAALETAQAADFVRERTTGEGETAASGLDSSLSQGGTDV
+SGGQRQRLSIARALVADPRILLFDDSFSALDVTTDATLRAALDASAAQTTRVVVAQRVATITDADQIVVLEAGRVVGRGT
+HAELLAGNETYRQIVDSQVREEELA
+>SA211_MHAAABBN_01856
+MLWTLLRRHGRRYRGAVAAVVVLQLISTLAMLYLPSLNARIIDEGVARGDTARIWDIGLVMLGVALVQVVAAIAAVWFGA
+KASMGVGRDLRRAVYTRVDAFSAEELGRFGAATLITRGTNDVNQVQMLTLMALNFMVAVPIMAVGGIIMAIREDPGLSWL
+VWVSVPVLLVIVAWIVARLMPLFQRMQDNIDDVNGVMREQIQGIRVVRAFVRERHETRRFTDANAALTETSVRIGRLFVL
+LGPVITMILHLATAAVLWFGGERVDAGLVQVGALTAFMQYLLQILMAVMMGTFMMMMLPRAVISARRIGEVLDTVPTLAE
+PVRPVTPARRDGAVELRHVTFQYPGAEAPVLDDVSFAVAPGTTTAIIGSTGSGKSTLISLLPRLYDATSGEVLVDGVPVT
+DLARAELTEAVALVPQKPYLFSGTVRENMQFGAPDASDERIWAALETAQAADFVRARTTGKAETAASGLDSRLSQGGTDV
+SGGQRQRLSIARALVAEPRILVFDDSFSALDVTTDARLRAALDRAAAGVTRIVVAQRVATITDADQIIVLDEGRVVGRGT
+HAELLADNQTYREIVDSQLTAEDVA
+>TT9_LFPAFLNI_02086
+MLWTLLRRHGRRYRGAVAAVVVLQLISTLAMLYLPSLNARIIDEGVARGDTARIWDIGLVMLGVALVQVVAAIAAVWFGA
+KASMGVGRDLRRAVYTRVDAFSAEELGRFGAATLITRGTNDVNQVQMLTLMALNFMVAVPIMAVGGIIMAIREDPGLSWL
+VWVSVPVLLVIVAWIVAGLMPLFQRMQDNIDDVNGVMREQIQGIRVVRAFVRERHEARRFTDANAALTETSVRIGRLFVL
+LGPVITMILHLATAAVLWFGGQRVDAGLVQVGALTAFMQYLLQILMAVMMGTFMMMMLPRAVISARRIGEVLDTVPTLGE
+PARPVSPARRDGAVELRHVTFQYPGAEAPVLDDVSFAVAPGTTTAIIGSTGSGKSTLISLLPRLYDATSGEVLVDGVPVT
+DLARAELTEAVALVPQKPYLFSGTVRENMQFGAPDASDERIWAALETAQAADFVRARTTGKGEAAASGLDSRLSQGGTDV
+SGGQRQRLSIARALVAEPRVLVFDDSFSALDVTTDARLRAALDRAAAGVTRIVVAQRVATITDADQIIVLDEGRVVGRGT
+HAELLADNQTYREIVDSQLTAEDVA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000481.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000481.fa
new file mode 100644
index 0000000000000000000000000000000000000000..99810425539a74778ff73567dda46882d52ebda2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000481.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00622
+MSGTEKHGSTAAPQGEVGELTDAEIAAFQEAGVTDEWGEGPPRKAKAFWPSAMRLLGLFAPERTGLILVSLMVLVAVVLN
+VWAPHVLGQAMDVIFGGLISRDMPAGLTREQVIEGLRGQGQGQAADMLSGMAFVPGQGIDFAELARLILIVLGMYVVAQL
+FMWLQGRVLNDLVMRIVFRLREDIEAKLNRLPLSYFDTRQRGDLLSRTTNDVDNVQQAMQQAFATLVYSVLTIIGIVGMM
+FWLSWQLALIALIALPVAGVMVGVIGSKSQKLFTAQWRETGRLNGHIEESFTGHELVTVFGRQADMAERFDERNEAMYEA
+SFKAQFYSGMIMPIMQWVNWLGYVGIAVVGGLRVANGQMTLGAVTAFIQYSREFNQPLGQVAGMSNMLISGVASAERIFE
+LLDEDEQDSDAEVARRASDDDVAEPADAS---VRET---GASADDDVAHLPQPVAGRVEFEHVRFSYTEAKPLITDLNLV
+AEPGQTIAIVGPTGAGKTTLVNLIMRFYEVDGGRILVDGVDTRTVSREELRSHTGMVLQDAVLFGGTIRENIRYGRQDAT
+DEEVVAAAKATFVDRFVHTLPEGYDTVIEQDASNVSAGERQLITIARAFLAQPSLLILDEATSSVDTRTEVLVQGAMAAL
+RSDRTSFVIAHRLSTIRDADVILVMEHGDIVEQGNHAELLAARGAYHRLYMSQFKGGE-----DDGGGAASGEDAR
+>KBS0714_MOLHKGIG_02147
+MS---------------EHLTDEEILEIQEQGATDDWGGGPARKAKAFWPSAKRLMSLFRTEKLGLVVVALMVLVAVVLN
+VWAPHVLGRAMDVIFGGVVSAQMPGGLSREQVIDGLRAQGEDQAAEMLSGMAFTPGEGIDFTELGRLILIVLGMYLVAQT
+FMWLQGRVLNDIVMRIVFRLREEIEAKINRLPLSYFDRGQRGDLLSRATNDVDNVQQALQQAFASLVYSVLTVIGIVGMM
+FWLSWQLALIALIALPVAGVVVGVIGKKSQALFSAQWRETGRLNGHIEESFTGHELVTVFGRQRDMAARFDERNEELYEA
+AFTAQFYSGMIMPIMQWVNWLGYVGIAVVGGLRVANGQMTLGAVTAFIQYSREFNQPLGQIAGMSNMLISGVASAERIFE
+LLDEPEETPDGTPARTPARTFVRETAPSEGTFVRETAPSAASGPDVVAHLPRPLRGRVEFEHVRFSYTPEKPLITDLNLV
+AEPGQTVAIVGPTGAGKTTLVNLIMRFYEVDGGRILLDGVDTRTVSRSELRAATGMVLQDAVLFGGTIRENIRYGRLDAT
+DEEVVAAAKATYVDRFVHTLPEGYDTVIEHDASNVSAGERQLITIARAFLAQPSLLILDEATSSVDTRTEVLVQGAMAAL
+RSDRTSFVIAHRLSTIRDADVILVMEHGDIVEQGSHAELLAAKGAYHRLYMSQFKGGE-----DDDGA-ASRDDAR
+>KD337_NAFOICDF_00547
+MS---------------EQLTDQEIVELQESGATDEWGGGPGRKAKAFWPSAKRLLGLFRTEKAGLALVAAMVLVAVVFN
+VWAPHVLGRAMDVLFGGVISKGMPAGVSREQVIEGLRGQGQGQAADMLSGMDFTPGQGIDFDALARLILTVLGMYVVAQG
+FMWLQGRVLNDVVMRIVFRLREQIEAKLNRLPLSHFDTRQRGDLLSRATNDVDNVQQAMQQAFATLVYSVLTIFGIVGMM
+FWLSWELALIALIALPVAGVVVGVVGKKSQALFTAQWRETGRLNGHIEESFTGHELVTVFGRQRDMAERFDERNDAMYEA
+SFKAQFYSGMIMPIMQWVNWLGYVGIAVVGGLRVANGQMTLGAVTAFIQYSREFNQPLGQVAGMSNMLISGVASAERIFE
+LLDEPEEEPDDVVAAR--------------------------ADDDVAHLPQPVAGRVEFEHVRFSYTEAKPLITDLNLV
+AEPGQTIAIVGPTGAGKTTLVNLIMRFYEVDGGRILLDGVDTRRVPRQELRAATGMVLQDAVLFGGTIRENIRYGRLEAT
+DEEVLAAAKATYVDRFVHTLPDGYDTVIEQDASNISAGERQLITIARAFLAQPSLLILDEATSSVDTRTEVLVQQAMAAL
+RNDRTSFVIAHRLSTIRDADVILVMEHGDIVEQGSHEELLAARGAYHRLYTSQFRGGE--DEHHDDGAPASR----
+>SA211_MHAAABBN_01855
+MS---------------EHLTDEEILEIQEQGATDDWGGGPARKAKAFWPSAKRLMSLFRTEKLGLVVVALMVLVAVVLN
+VWAPHVLGRAMDVIFGGVVSAQMPGGLSREQVIDGLRAQGEDQAAEMLSGMAFTPGEGIDFTELGRLILIVLGMYLVAQT
+FMWLQGRVLNDIVMRIVFRLREEIEAKINRLPLSYFDRGQRGDLLSRATNDVDNVQQALQQAFASLVYSVLTVIGIVGMM
+FWLSWQLALIALVALPVAGVVVGVIGKKSQALFSAQWRETGRLNGHIEESFTGHELVTVFGRQRDMAARFDERNEELYEA
+AFTAQFYSGMIMPIMQWVNWLGYVGIAVVGGLRVANGQMTLGAVTAFIQYSREFNQPLGQIAGMSNMLISGVASAERIFE
+LLDEPEETPDGTPARTPDGTFVWETAPSESAFVRETAPSAIPGPDGVAHLPRPLRGRVEFEHVRFSYTPEKPLITDLNFV
+AEPGQTVAIVGPTGAGKTTLVNLIMRFYEVDGGRILLDGVDTRTVSRGELRAATGMVLQDAVLFGGTIRENIRYGRLDAT
+DEEVVAAAKATYVDRFVHTLPDGYDTVIEQDAANVSAGERQLITIARAFLAQPSLLILDEATSSVDTRTEVLVQGAMAAL
+RSDRTSFVIAHRLSTIRDADVILVMEDGDIVEQGSHDQLLAARGAYFRLYRSQFQGGEQAEEQDDDGAPAAREDAR
+>TT9_LFPAFLNI_02085
+MS---------------EHLTDEEILEIQEQGATDDWGGGPARKAKAFWPSAKRLMSLFRTEKLGLAVVAVMVLVAVVFN
+VWAPRVLGRAMDVIFGGVVSAQMPGGLSREQVIDGLRAQGEDQAAEMLSGMAFTPGEGIDFTELGRLILIVLGMYLVAQT
+FMWLQGRVLNDIVMRIVFRLREEIEAKINRLPLSYFDRGQRGDLLSRATNDVDNVQQALQQAFASLVYSVLTVIGIVGMM
+FWLSWQLALIALVALPVAGVVVGVIGKKSQALFSAQWRETGRLNGHIEESFTGHELVTVFGRQRDMAARFDERNEELYEA
+AFTAQFYSGMIMPIMQWVNWLGYVGIAVVGGLRVANGQMTLGAVTAFIQYSREFNQPLGQIAGMSNMLISGVASAERIFE
+LLDEPEETPDGTPARTPDGTFVWETAPSESAFVRETAPSAIPGPDGVAHLPRPLRGRVEFEHVRFSYTPEKPLITDLNFV
+AEPGQTVAIVGPTGAGKTTLVNLIMRFYEVDGGRILLDGVDTRTVSRGELRAATGMVLQDAVLFGGTIRENIRYGRLDAT
+DEEVVAAAKATYVDRFVHTLPDGYDTVIEQDAANVSAGERQLITIARAFLAQPSLLILDEATSSVDTRTEVLVQGAMAAL
+RSDRTSFVIAHRLSTIRDADVILVMEDGDIVEQGSHDQLLAARGAYFRLYRSQFQGGEQAEEQDDDGAPAAREDAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000483.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000483.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f22c785fda4ead1837b9fac6a4a3ef073d3ed7cb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000483.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00627
+MSKVTRWAALVLTLVLVAALAFWAGRATLTPPAQADQRPSEDAVVTVAEQELGRVITLGV
+SVAREQAPAAVNALSGVVTRAGESGEVAAGDVLYAVAQQPVIAVQGELPQWRALDEGATG
+SDVAAFQRMLAATGAKVEVTGTWDEATAVAWNGWLTERDYPAAGTVELGQLVVLESLPAA
+LSVDAKATAVGGALAGGETIVARPGDEPTFAIEVNQDQAAMIPAGTAVTVPHGEHEWEAV
+AGESTADDQGLIRIPLTAPDGGAVCGADCDSLPAEASTSLLSKVNVVPPVTGPVVPVSAL
+RTQPGGAVVVTVVQDGVEEERTVTVRGSADGLAVVDGVDAGETVRVLNGAP
+>KBS0714_MOLHKGIG_02145
+MTRPLRWATLAGVLLIVAVLAFWAGRATLTPPAQAEQRPSEDALVTVAEQELGRVITLGV
+SVTREQAPAAVNALSGVVTRAGESGEVAAGDVLYAVAQQPVITVQGELPQWRALGEGATG
+SDVAAFQRMLAATGAKVEVTGTWDEATAVAWNGWLTERDYPAADTVELGQLVVLESLPAA
+LSVDAKATAVGGALAGGETIVARPGDEPTFAIEVNQDQAAIIPAGTAVTVPHGEHEWEAV
+AGESTADDQGLIRIPLTAPDGGAVCGADCDSLPAEASTSLLSKVNVVPPVTGPVVPVSAL
+RTQPDGAARVTVVRDGVQEERTVIVRGSADGLAVVDGVDAGETVRVLNGAP
+>KD337_NAFOICDF_00551
+MTRPARWAALVLAVVLVAALAFWAGRVTLTPPAQAEQRPSEDAVVTVAEQELGRVITLGV
+SVTREQAPAAVNALSGVVTRAGQSGEVAAGDVLYAVAQKPVIAVQGELPQWRALGEGATG
+SDVTAFQRMLTATGTKVKATGTWDEATATAWNAWLTTRGYPAADTVELGQLVVLESLPTA
+LSVDAKATAVGGTLAGGETIVARPGDEPTFAIEVNQDQAAMIPAGTAVTVPHGEHEWKAV
+AGESISDEQGLIRITLTAPDGGVVCGEDCDTLPADPTTSLLSQVSVVPPVSGPVVPVSAL
+RTQPDGAATVTVVRDGAAEDRTVTVLGSADGLAVVDGVDAGEQVRVLNGTR
+>SA211_MHAAABBN_01852
+MNRPARWAALVLALVAVAALAFWAGRVTLTPPAQAEQRPAASALVTVAEQELGRVITLGV
+SVSREQTPAAVNALTGVVTRAGESGEVAAGEVLYAVAQKPVLVLQGELPQWRPLGEGTSG
+DDVAAFQRMLAATGAKVEATGTWDEATADAWDDWLTERGYPAADTVELGQLVVLDALPAP
+LSVDAKTTAVGTTLAGGENVVARPGDQPDFALEVNQEQAALIPAGTQVTVPHGEHEWKAV
+AGESTSDEQGLIRITLTAPDGGVVCGEDCDTLPADATTSLLSQVSVVPPVSGPVVPVSAL
+RTQPDGAATVTVVRDGAAEDRAVTVLGSADGLAVVDGVDAGEQVRVLNGTR
+>TT9_LFPAFLNI_02082
+MNRPARWAALVLALVAVAALAFWAGRVTLTPPAQAEQRPAASALVTVAEQELGRVITLGV
+SVSREQTPAAVNALTGVVTRAGESGEVAAGEVLYAVAQKPVLVLQGELPQWRPLGEGTSG
+DDVAAFQRMLAATGAKVEATGTWDEATADAWDDWLTERGYPAADTVELGQLVVLDALPAP
+LSVDAKTTAVGTTLAGGEKVVARPGDQPDFALEVNQEQAALIPAGTQVTVPHGEHEWKAV
+AGESTSDEQGLIRITLTAPDGGVVCGEDCDTLPADATTSLLSQVSVVPPVSGPVVPVSAL
+RTQPDGAATVTVVRDGAAEDRTVTVLGSADGLAVVDGVDAGEQVRVLNGTR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000486.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000486.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b1a071e7110af8e1fe908cfa3125774242dfc50a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000486.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00632
+----------MALFSQPVFINLPTTDTERIREFWTSLGAQAIEDFSDENSVCIELTESTF
+AMYLSPGYYTDFIGDREIADCMTTNSALMALTVGDAAAVDALADRAIEAGAAEVPLPVDL
+REEMVDSGMHSREIVDPDGHQWEFVTA
+>KBS0714_MOLHKGIG_02140
+----------MALFSQPVFINLPTTDTERIREFWTTLGATAMDDYSDEHSVCIELTESTY
+AMYLSPGYYTDFIGNREIADCLTTNSALMALTVGDAAAVDALADRAIELGAAEVPLPEDL
+REEMADSGMHSREIVDPDGHQWEFVTA
+>KD337_NAFOICDF_00556
+MRTRWSTVLVMALFSQPVYINLPSTDTERIREFWTSMGADIDEDFSDENSVCVQLTESTF
+AMYLSPGFYTDFIGDREIADCLTTNSVLLQLTAPDRGAVDALVRAAVEAGGSEVPLPDEL
+QEDMTATGVHSRQVVDPDGHQWEFMAA
+>SA211_MHAAABBN_01848
+----------MALFSQPVFINLPTTDTERIREFWTTLGATAMDDYSDEHSVCIELTESTY
+AMYLSPGYYTDFIGNREIADCLTTNSALMALTVGDAAAVDALADRAIELGAAEVPLPEDL
+REEMADSGMHSREIVDPDGHQWEFVTA
+>TT9_LFPAFLNI_02078
+----------MALFSQPVFINLPTTDTERIREFWTTLGATAMDDYSDEHSVCIELTESTY
+AMYLSPGYYTDFIGNREIADCLTTNSALMALTVGDAAAVDALADRAIELGAAEVPLPEDL
+REEMADSGMHSREIVDPDGHQWEFITA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000489.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000489.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2050744bc78b0bde4d0ab2e72989fa5e9b39f32d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000489.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00635
+M---QTPLEISSVVFKPILIRAVVALAFGLTTVFVAAPGLTWMKVSLALYLAFSGSAMWE
+YLRREPVPVAMRSPLSMAAAASMLGVIVLLFLGTPAGVGLAAAAALVLGGAAELVAWARH
+RREFIPARDQLWTGLVGLLSGLGVAFGALQGFGPHALLGIAGGGAIIIGVLLLVSGLGFH
+HEVRRDRGTAKGL
+>KBS0714_MOLHKGIG_02137
+M---QTPLEISSVVFKPILIRAVVALAFGLTTVFVAEPGLTWMKVMFALYLAFSGSAMWE
+YLRRDPVPVAMRSPLSLAAAAWMLGVIVLLFLGSPAAVGVAAGAALVLGGVAELVAWARH
+RREFIPARDQLWTGLVGLLSGGGVVVAALQGFGPHALLGIAGGGAILIGVLLMVSGLGFH
+HEVRRDRGTARGL
+>KD337_NAFOICDF_00559
+MTSPQTPLEISSEVFKPVLIRAGVALIFGLTTVFVQNPGLTWMKVAFALYLVFSGSALWE
+YLRRDPVPVGMRSPLSLAAAAWMLGTVVLVIMGSPAAVGIVVGLALLAGGAAELTAWARF
+RREFIPARDQLWTGLVGALSGLGVLVGAVQGFGPHALLGIAGGGAIIVGVLMLISGLGFH
+HEVRRDRGTAKGL
+>SA211_MHAAABBN_01845
+M---QTPLEISSVVFKPILIRAVVALAFGLTTVFVAEPGLTWMKVMFALYLAFSGSAMWE
+YLRRDPVPVAMRSPLSLAAAAWMLGVIVLLFLGSPAAVGVAAGAALVLGGVAELVAWARH
+RREFIPARDQLWTGLVGLLSGGGVVVAALQGFGPHALLGIAGGGAILIGVLLMVSGLGFH
+HEVRRDRGTARGL
+>TT9_LFPAFLNI_02075
+M---QTPLEISSVVFKPILIRAVVALAFGLTTVFVAEPGLTWMKVMFALYLAFSGSAMWE
+YLRRDPVPVAMRSPLSLAAAAWMLGVIVLLFLGSPAAVGVAAGAALVLGGVAELVAWARH
+RREFIPARDQLWTGLVGLLSGGGVVVAALQGFGPHALLGIAGGGAILIGVLLMVSGLGFH
+HEVRRDRGTARGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000490.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000490.fa
new file mode 100644
index 0000000000000000000000000000000000000000..30401c9177f766f234ecb4ef415c9d3279550186
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000490.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00636
+MSAPSPRPSADRA--GTGRPARGGLRTTVKGPLVFSAVLGVIGGVIAGITASGGTQNPLR
+IDIALIAFGVFFMTSLVVVAMLQLAARENPDHLSAGSGINRSSEETFQKAAAERRAQVAR
+ERREQDGTGGDAPRA
+>KBS0714_MOLHKGIG_02136
+MSAPSPRPSADRA--GSGRPARGGLRTTVKGPLVFSAVLGLIGGVIAGITASGGTQNPLR
+IDIALIAFGVFFMTSLVVVAMLQLAARENPDHLSQGSGVNRSSEEMFRKAAADRRAQAAR
+ERREQGGTGGDAPRA
+>KD337_NAFOICDF_00560
+MSAQSPRPSDDRTRPGAGRPARGGLRTTVKGPLVFSAVLGLVGGVVAALTASGGTANPLR
+IDIGLIAFGVFFMTSLVVVAMLQLASRENPDHLSRGSGVNRSSEETFQRRAAERRAKAAA
+ERRAAQGDAG----R
+>SA211_MHAAABBN_01844
+MSAPSPRPSADRA--GSGRPARGGLRTTVKGPLVFSAVLGLIGGVIAGITASGGTQNPLR
+VDIALIAFGVFFMTSLVVVAMLQLAARENPDHLSQGSGVNRSSEEMFRKAAADRRAQAAA
+ERREQGGTGGDAPRA
+>TT9_LFPAFLNI_02074
+MSAPSPRPSADRA--GSGRPARGGLRTTVKGPLVFSAVLGLIGGVIAGITASGGTQNPLR
+VDIALIAFGVFFMTSLVVVAMLQLAARENPDHLSQGSGVNRSSEEMFRKAAADRRAQAAA
+ERREQGGTGGDAPRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000491.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000491.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6080b2f75b4ade4819d777b2ae2bfcac1af780a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000491.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00638
+MLSPRTLARLSSVAAFLNTAPGPRGGQEAPERFTAATQLPALVPELQEGEVRLRLAAAAA
+VRARELRERLTRVWALA-ATDESAAVERVNELLAEAGPLRLTAGGDVVGLAPAQVPADAV
+ERLAAMATLALAETAMDGELARLRVCEGEDCENALVDGSRNRSKRFCDEANCANRTHVRS
+YRARLA---------EAAEAAP------------ATDPAGPEEAEGTEAVVDEAAPADEP
+LQETEK-EKKER----RKAQKKARKKAEKKAGKKKSDKKKSDKKK--------D
+>KBS0714_MOLHKGIG_02134
+MLSAPTLTRLASLAAFLNTAPGLRGGQPADERFTAATQLPSLVPELQEDEVRLRLAAAAA
+VRGRELRGRLAEVWALA-AVDEAAAVERVNALLAAAGPLRLTAGGDVVGLAPAQVPADAV
+ERLAAMAALALAETAMDGELVRLRVCEGEDCENALVDASRNRSKRFCDEANCANRTHVRS
+YRARLA---------EAAEAAP------------ATDPAGPEEAEAPEAVADEAAPADKP
+RQETEK-EKKERKKAEKKAEKKARKKAEKKARKKKSDKKK-------------D
+>KD337_NAFOICDF_00561
+MLSPHTLARLASISAFLNTAPGVRGGQEAEERLTAGTQLPALVPELQEGESRLRVAAAAR
+TRAHELRARLTELWAAADAEDVPAAVAAVNELLAETGPLRLEVSDGSADLAPAQVPADAV
+ERLTAMAALALTEAALEGELTRLRVCAGEDCENTLVDASRNRSKRFCDAANCANRTHVRS
+YRARLAEAEDTQADVEAADAAPLPEVAPEADPQDATDLEAIEAAEGVESAVQEPVKKDST
+KDKKSKSEKKAR----RAAKKKAEKESEAAAEGKKGKREKSKKSEKHKKKAAKD
+>SA211_MHAAABBN_01842
+MLSAPTLSRLASLAAFLNTAPGLRGGQPADERFTAATQLPSLVPELQEDEVRLRLAAAAA
+VRGRELRGRLAEVWALA-AGDEAAAVERVNALLAAAGPLRLTAGGDVVGLAPAQVPADAV
+ERLAAMAALALAETAMDGELTRLRVCEGEDCENALVDASRNRSKRFCDEANCANRTHVRS
+YRARLA---------EAAESAP------------AADPAGPEEAEAPEAVVDSEAAADEP
+RRETKK-EKKER----RKAEKKARKKAEKKAGKKKSDKKK-------------D
+>TT9_LFPAFLNI_02072
+MLSAPTLSRLASLAAFLNTAPGLRGGQPADERFTAATQLPSLVPELQEDEVRLRLAAAAA
+GRGRELRGRLAEVWALA-AVDEAAAVERVNALLAAAGPLRLTAGGDVVGLAPAQVPADAV
+ERLAAMAALALAETAMDGELTRLRVCEGEDCENALVDASRNRSKRFCDEANCANRTHVRS
+YRARLA---------EAAESAP------------AADPAGPEEAEAPEAVVDSEAAADEP
+RRETKK-EKKER----RKAEKKARKKAEKKAGKKKSDKKK-------------D
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000497.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000497.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1dc056619fcf282030c4ab8be367301ce5f1b666
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000497.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00652
+MTTMKAAVVTQFGKEADVQEVERPTPGQHQALVKLISSGVCHTDLHAMEGDWPVKPTPPF
+IPGHEGVGIVEEVGPDVENLKVGDMVGNAWLWRACGHCQYCRTGWETLCEEQVNGGYSAD
+GSFGEYMLVDARYAPVIPEGADPMEVGPILCAGVTVYKGLKQTEVRPGQWVVISGIGGLG
+HIAVQYAVAMGMRVVAVDVADDKLALASRHGAELTVNANVADPSVEIQEKIGGAHGVLVT
+AVHPQAFGQAIAMTRRGGTIVFNGLPPGDFPAPIFDIVLKGLTIRGSIVGTRQDMVEALE
+FYAAGKIHPTFHTRPLTEINDVFEEMRHGKIEGRVVIDYAMQD
+>KBS0714_MOLHKGIG_02128
+MTTMKAAVVTQFGTEADVTEVERPTPGQHEALVKLISSGVCHTDLHAMEGDWPVKPTPPF
+IPGHEGVGIVEEVGPDVENLKVGDMVGNAWLWRACGHCQYCRTGWETLCEEQVNGGYSVD
+GSFGEYMLVDARYAPVIPEGADPMEVGPILCAGVTVYKGLKQTEVRPGQWVVISGIGGLG
+HIAVQYAVAMGMRVVAVDVADDKLALASRHGAELTVNANVADPSVEIQEKIGGAHGVLVT
+AVHPQAFGQAIAMTRRGGTIVFNGLPPGDFPAPIFDIVLKGLTIRGSIVGTRQDMVEALE
+FYAAGKIHPTFHTRPLTEINDVFDEMRHGKIEGRVVIDYAMQD
+>KD337_NAFOICDF_00568
+MTTMKAAVVSQFGKEADVKEVERPTPGQHQALVKLISSGVCHTDLHAMEGDWPVKPTPPF
+IPGHEGVGIVEEVGPDVENLKVGDMVGNAWLWGACGHCQYCRTGWETLCEEQINGGYSMN
+GSFGEYMLVDARYAPVIPEGADPMEVGPILCAGVTVYKGLKQTEVRPGQWVVISGIGGLG
+HIAVQYAVAMGMRVVAVDVADDKLALASRHGAELTVNANVADPSVEIQEKIGGAHGVLVT
+AVHPQAFGQAIAMTRRGGTIVFNGLPPGDFPAPIFDIVLKGLTIRGSIVGTRQDMVEALE
+FYAAGKIHPTFHTRPLTEINDVFEEMRHGKIEGRVVIDYAMQD
+>SA211_MHAAABBN_01836
+MTTMKAAVVTQFGTEADVTEVERPTPGQHQALVKLISSGVCHTDLHAMEGDWPVKPTPPF
+IPGHEGVGIVEEVGPDVENLKVGDMVGNAWLWRACGHCQYCRTGWETLCEEQVNGGYSVD
+GSFGEYMLVDARYAPVIPEGADPMEVGPILCAGVTVYKGLKQTEVRPGQWVVISGIGGLG
+HIAVQYAVAMGMRVVAVDVADDKLALASRHGAELTVNANVADPSVEIQEKIGGAHGVLVT
+AVHPQAFGQAIAMTRRGGTIVFNGLPPGDFPAPIFDIVLKGLTIRGSIVGTRQDMVEALE
+FYAAGKIHPTFHTRPLTEINDVFDEMRHGKIEGRVVIDYAMQD
+>TT9_LFPAFLNI_02066
+MTTMKAAVVTQFGTEADVTEVERPTPGQHQALVKLISSGVCHTDLHAMEGDWPVKPTPPF
+IPGHEGVGIVEEVGPDVENLKVGDMVGNAWLWRACGHCQYCRTGWETLCEEQVNGGYSVD
+GSFGEYMLVDARYAPVIPEGADPMEVGPILCAGVTVYKGLKQTEVRPGQWVVISGIGGLG
+HIAVQYAVAMGMRVVAVDVADDKLALASRHGAELTVNANVADPSVEIQEKIGGAHGVLVT
+AVHPQAFGQAIAMTRRGGTIVFNGLPPGDFPAPIFDIVLKGLTIRGSIVGTRQDMVEALE
+FYAAGKIHPTFHTRPLTEINDVFDEMRHGKIEGRVVIDYAMQD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000500.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000500.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b543c93c354859e488e5f97eaaa631b51826daac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000500.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00655
+MSAGQDATTAGPVVESVELHVAAGAEAAFEAAVAEAAELFRGARATSFALTRQVEDPARY
+RLLIGWRTLEDHTVGFRESEAFGQWRALVTPHLAQPPAATHWESVAAAF
+>KBS0714_MOLHKGIG_02125
+MSAGQGATTAGPVIESVELHVAAGAEAAFEAAVAEAEPLFRDGGATSFALSRQVEDPARY
+RLLIGWRTLEDHTVAFRESDSFLAWRALVTPHLAQLPAATHWSAV----
+>KD337_NAFOICDF_00572
+-----------------------------------------------------MEDPARY
+RLLIGWRTLEDHTVGFRESDAFLAWRALVTPHLAQPPAATHWSAV----
+>SA211_MHAAABBN_01833
+MSAGQDATTAGPVVESVELHVAAGAEAAFEAAVAEAEPLFRDKGATSFALSRQVEDPARY
+RLLIGWRTLEDHTVAFRESDAFLAWRALVTPHLAQPPAATHWSAV----
+>TT9_LFPAFLNI_02063
+MSAGQDATTAGPVVESVELHVAAGAEAAFEAAVAEAEPLFRDGGATSFALSRQVEDPAHY
+RLLIGWRTLEDHTVAFRESDAFLAWRALVTPHLAQPPAATHWSAV----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000502.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000502.fa
new file mode 100644
index 0000000000000000000000000000000000000000..475b01ed9d13a1a91dc9aa01b3d0ff6f37c939d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000502.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00659
+MTTTDLKITGMTCGHCVASVQEELGEIAGVTAVDVDLTAGGVSTATVTSESPLDPAAARA
+AVEEAGYRLVEG
+>KBS0714_MOLHKGIG_02121
+MTTTDLKITGMTCGHCVASVQEELGEIAGVSAVDVDLNSGGVSTATVTSEAPLDPAAARA
+AVEEAGYTLVEA
+>KD337_NAFOICDF_00576
+MTTTDLKITGMTCGHCVASVREELGEIAGVSAVDVDLNAGGVSTATVTSEGPLGPAAARA
+AVEEAGYTLVEG
+>SA211_MHAAABBN_01829
+MTTTDLKITGMTCGHCAASVREELGEIAGVSAVDVDLNAGGVSTATVTSEGPLDPAAARA
+AVEEAGYTLVEA
+>TT9_LFPAFLNI_02059
+MTTTDLKITGMTCGHCAASVREELGEIAGVSAVDVDLNAGGVSTATVTSEGPLDPAAARA
+AVEEAGYTLVEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000503.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000503.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4430498bae7d2407a4e23973cf648437e96472be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000503.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00660
+MSTLPTTTD-------AHDGADPCAGAHPPHAAHRDKDAHLTRLRRIEGQVRGIHRMVDE
+DVYCIDILTQVAAVTKALQAMSLNLTSEHLRHCVAEAAVEAEASGRTELIDEKVAEATAA
+IGRLLR
+>KBS0714_MOLHKGIG_02120
+MSTDSTTTAPAAASPLPSAAADACDGHRPPHEVHRDKAKHLARLRRIEGQVRGLHRMVDE
+DVYCIDVLTQVAAVTKALQSLSLNLTSEHLRHCVAEAAVQAEAEGRTELIDEKVAEATAA
+LGRLLR
+>KD337_NAFOICDF_00577
+MEHD----------------RHAGPGYSPQREA------YLKRLKRIEGQVRGIHRMVEE
+DVYCIDVLTQVAAATKALHAVSLGLVEDHLRHCVAEAAVQAEAEGRTELIDEKVAEATAA
+LGRLLR
+>SA211_MHAAABBN_01828
+MSTDSTTTAPAAASPLPSAAADACDGHRPPHEVHRDKAKHLARLRRIEGQVRGLHRMVDE
+DVYCIDVLTQVAAVTKALQSLSLNLTSEHLRHCVAEAAVQAEAEGRTELIDEKVAEATAA
+LGRLLR
+>TT9_LFPAFLNI_02058
+MSTDSTTTAPAAASPLPSAAADACDGHRPPHEVHRDKAKHLARLRRIEGQVRGLHRMVDE
+DVYCIDVLTQVAAVTKALQSLSLNLTSEHLRHCVAEAAVQAEAEGRTELIDEKVAEATAA
+LGRLLR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000507.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000507.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4c9c3a1f6b6be658c71d8d8eabed99ef678b223e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000507.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00665
+---MSDYQPRRPGSNPAPARRTDRAGKPALGRPKRGLIDESEARQLAEDRERMRRAGVGH
+QLSAPKRREAAT-AERPQVMPQTEGWTQPMGPDGRPQLQFKQPRVSQPPTHLADLTLAER
+QAKAKEIGLPAFRAKQLSVHYFERYTTDPEQMTDLPKDKREVIAEAFFPPLLTEVRRMET
+DRGDTVKFLWRLFDGALVESVLMRYPGRVTLCVSSQAGCGMNCPFCATGQAGLTRNMSTA
+EIVEQIVRANQVIAEGGLGGKRKDGGHDADRVTNVVFMGMGEPLANYKRVMAAVHRMVDP
+APEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSLHAPDDELRDELIPVNSRWKAD
+EAIDAAYDYFVATGRRVSIEYALIKDMNDHAWRADLLAKKLNARGKGWVHVNPIPLNPTP
+GSIWTASEKDVTREFVERLNAAGIPTTLRDTRGKEIDGACGQLAAGDEDA----
+>KBS0714_MOLHKGIG_02115
+---MSDYQPRRPGSKPTPNRQRDRAGKPALGRPERGLIDESEARQLAEDRERMRRAGVGH
+QLSAPKRREAAT-AERPQVMPKTEGWTQPMGPDGRPQLQFKQPRVSQPPTHLADLTLKER
+QEKAKEIGLPAFRAKQLSVHYFEHYTTDPEQMTDLPKDKREAIAEAFFPPLLTEVRRMET
+DRGDTIKFLWRLFDGALVESVLMRYPGRVTLCVSSQAGCGMNCPFCATGQAGLTRNMSTA
+EIVEQIVLANQVIAQGGLGGKRKDGGHDADRVTNVVFMGMGEPLANYKRVMAAVHRMVDP
+SPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSLHAPDDELRDELIPVNSRWKAD
+EAIDAAYDYFVATGRRVSIEYALIKDMNDHAWRADLLAKKLNARGKGWVHVNPIPLNPTP
+GSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEIDGACGQLAAEDVD-----
+>KD337_NAFOICDF_00581
+MEGMSDYTPRRPGSKPTPARQKDRAGKPALGRPRRGMIDEPEARQLAEDRERMHRAGVGH
+QLSAPPRRAAEVDADRPQVMPKTEGWQQPMGPDGRPQLQFKQPRVSQPPQHLADMTLAER
+QAKAKEIGLPAFRAKQLSVHYFEHFTTDPEQMTDLPKGKREEIAEAFFPPLLTEVRRLTT
+DRGDTVKFLWRLFDGALVESVLMRYPGRVTLCVSSQAGCGMNCPFCATGQAGLTRNMSTA
+EIVEQIVRANQVIAEGGLGGTRRDGGHDADRVTNVVFMGMGEPLANYKRVMAAVHRMVDP
+APEGLGMSARHVTLSTVGLVPAIKKLAQEGVPLTFALSLHAPDDELRDELIPVNARWKAD
+EAIDAAYEYFLATGRRVSIEYALIKDMNDHAWRADLLAKKLNARGKGWVHVNPIPLNPTP
+GSIWTASEKDVTREFVDRLNAAGIPATLRDTRGKEIDGACGQLAADDEDVAARA
+>SA211_MHAAABBN_01823
+---MSDYQPRRPGSKSTPNRQRDRAGKPALGRPERGLIDESEARQLAEDRERMRRAGVGH
+QLSAPKRREAAT-AERPQVMPKTEGWTQPMGPDGRPQLQFKQPRVSQPPTHLADLTLKER
+QEKAKEIGLPAFRAKQLSVHYFEHYTTDPEQMTDLPKDKREAIAEAFFPPLLTEVRRMET
+DRGDTVKFLWRLFDGALVESVLMRYPGRVTLCVSSQAGCGMNCPFCATGQAGLTRNMSTA
+EIVEQIVLANQVIAQGGLGGKRKDGGHDADRVTNVVFMGMGEPLANYKRVMAAVHRMVDP
+SPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSLHAPDDELRDELIPVNSRWKAD
+EAIDAAYDYFVATGRRVSIEYALIKDMNDHAWRADLLAKKLNARGKGWVHVNPIPLNPTP
+GSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEIDGACGQLAAEDVD-----
+>TT9_LFPAFLNI_02053
+---MSDYQPRRTGSKPTPNRQRDRAGKPALGRPERGLIDESEARQLAEDRERMRRAGVGH
+QLSAPKRREAAT-AERPQVMPKTEGWTQPMGPDGRPQLQFKQPRVSQPPTHLADLTLKER
+QEKAKEIGLPAFRAKQLSVHYFEHYTTDPEQMTDLPKDKREAIAEAFFPPLLTEVRRMET
+DRGDTVKFLWRLFDGALVESVLMRYPGRVTLCVSSQAGCGMNCPFCATGQAGLTRNMSPA
+EIVEQIVLANQVIAQGGLGGKRKDGGHDADRVTNVVFMGMGEPLANYKRVMAAVHRMVDP
+SPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSLHAPDDELRDELIPVNSRWKAD
+EAIDAAYDYFVATGRRVSIEYALIKDMNDHAWRADLLAKKLNARGKGWVHVNPIPLNPTP
+GSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEIDGACGQLAAEDVD-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000508.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000508.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d1638bc70515c17dbb1cf92c8cbedbc4488886e0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000508.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00666
+MGHKDPRTHLLEKLEKSNVCMLTTSETDGTLTTRPMGLQKAE-ETGTLWFMTRAASDVAS
+DASQRPVNVSVQDKDFWASVAGHGQVVRDDARKKEFWNPATEAFFGEGAKPEDPQIVLVR
+VDVESAQYWESPGAVGTVVELIKAKVTGGEAHPGESTTVQF
+>KBS0714_MOLHKGIG_02114
+MGTQDPRARLLEKLAKVNVCMLTTAEPDGTLVTRPMGLQQAE-DGGTLWFLTRATSDVAA
+DAPQRPVNVAVQDKDFWASLAGHGQLVRDDARKKEFWNPATEAFFGEGSSPEDPQIVLVR
+VDVQTAQFWESPGAVATAVELVKAKVTGGEAHPGDSETVRF
+>KD337_NAFOICDF_00582
+MTEQDPRTALLEKIEKAGVVMLTTAEEDGTLASRPMAVQEVEQEPGVLWFITRATGDAAQ
+DSAGRPVNVAVQEKGFWASVAGHGEIVRDEARKTEYWNSATEAFFGEGARPEDPQIVLVR
+VQADSAEYWDGGGA-ASVVEIVKAKVTGGEARPGDHDTVEF
+>SA211_MHAAABBN_01822
+MGTQDPRTHLLEKLAKVHVCMLTTAEADGTLVTRPMGLQQAE-DGGTLWFMTRSTSDVAA
+DAPQRPVNVAVQDKDFWASLAGHGQLVRDDARKKEFWNSATEAFFGEGSSPEDPQIVLVR
+VDVNTAQFWESPGAVATAVEMVKAKVTGGTAEPGDSETVRF
+>TT9_LFPAFLNI_02052
+MGTQDPRARLLEKLAKVNVCMLTTAEQDGTLVTRPMGLQQAE-DGGTLWFLTRATSDVAA
+DAPQRPVNVAVQDKDFWASLAGHGQLVRDDARKKEFWNPATEAFFGEGSSPEDPQIVLVR
+VDVDTAQFWESPGAVATAVELVKAKVTGGTAEPGDSETVRF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000510.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000510.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7102b66015d297324ca83db481681fbd977312e1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000510.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00668
+MATKDLTLEEFGTTVSENDTVLVDFWADWCGPCKQFAPVFDAASEKHEDIVFAKVDTEDQ
+QQLAAMAGITSIPTLMAFRGGVLVFSQAGALPAPALDQLLEQVKGLDIAEVRAMAEQQAG
+--------EAEAEPSQDEAVQSTASHLDEVNGR
+>KBS0714_MOLHKGIG_02110
+MATKDLTLEEFGSTVAENDTVLVDFWAGWCGPCRQFAPVFEAASEKHEDVVFAKVDTEDQ
+QQLAAMAGITSIPTLMAFRGGVLVFSQAGALPGTALEQLLDQVKGLDIAEVRRLAEEQQG
+Q-------QGDAEPGQDEAVQSTAAHLDDVNGR
+>KD337_NAFOICDF_00585
+MATTDLTLEAFGTTVSENDTVLVDFWAEWCGPCKMFGPVFETASEKHQNVVFAKVDTEDQ
+QQLAAMAGITSIPTLMAFRGGVLVFSQAGALPGQALDQLIDQVTALDIAEVRAMAEQQ-G
+--------AQDAEPSEEEAVQSAAAQLDDVNGR
+>SA211_MHAAABBN_01817
+MATKDLTLEEFGSTVAENDTVLVDFWAGWCGPCRQFAPVFEAASEKHEDVVFAKVDTEDQ
+QQLAAMAGITSIPTLMAFRGGVLVFSQAGALPGAALEQLLDQVKGLDIAEVRRLAEEQQG
+Q-------QGDAEPGQDDAVQSTAAHLDDVNGR
+>TT9_LFPAFLNI_02050
+MATKDLTLEEFGSTVAENDTVLVDFWAGWCGPCRQFAPVFEAASEKHDDVVFAKVDTEDQ
+QQLAAMAGITSIPTLMAFRGGVLVFSQAGALPGTALEQLLDQVKGLDVAEVRRLAEEQQG
+QQDDAEPGQDDAEPGQDEALQSTAAHLDDVNGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000511.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000511.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9ce35c6e651e1928c4886d7eef90a0649ed3564c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000511.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00669
+MQTPATPSPHDRPSPVVRPWMAAPDLPIAGPDGVERVVLLSPAGEAVGTEAKAAVHRRTE
+DGGTPLHLAFSCHVYDDAGRFLLTRRALGKKAFPGVWTNGFCGHPGPGESPAQAVLRRAP
+QELGAEVSDVVEVLPDFRYRAADASGMEEHEICPVFQARMHGDPAPERDEVAEWCWVEPA
+DLAAALAAVPRAFSPWLVEQWQQGAFEAR
+>KBS0714_MOLHKGIG_02109
+MQTPATPSPHDRPSPVARPWMAASDVPVAGPDDVERVVLLSPAGEAVGTEAKATVHRRTE
+DGGTPLHLAFSCHVYDEAGRFLLTRRALGKAAFPGVWTNGFCGHPGPGEPPAEAVLRRAP
+QELGVEVSDVVEVLPDFRYRAADASGMEEHEICPVFRARMHGDPAPERDEVAEWCWVEPA
+DLAAALAAVPRAFSPWLVEQWQQGAFDPR
+>KD337_NAFOICDF_00586
+MQQ-------------------GPSDPRTVEEVEERVVLLGADGAPIGTEAKASVHRNAA
+DGGTPLHLAFSCHVYGPDGRFLLTRRALGKKAFGGVWTNGFCGHPAPGEAPAEAVLRRAP
+QELGVGVREVTPLLPGFRYRAADAGGVEEHEVCPVFRAECDGDPVPERDEVAEWCWVEVA
+DLTAALASVPRVFSPWLVMQWEQGAFGPR
+>SA211_MHAAABBN_01816
+MQTPATPSPPDRPSPVARPWLAASDVPVAGPDDVERVVLLSPEGEAVGTEAKATVHRRTE
+DGGTPLHLAFSCHVYDEADRFLLTRRALGKAAFPGVWTNGFCGHPGPGESPAEAVLRRAP
+QELGVEVSDVVEVLPDFRYRAADASGMEEHEICPVFRARMHGDPAPERDEVAEWCWVEPA
+DLAAALAAVPRAFSPWLVEQWQQGAFDPR
+>TT9_LFPAFLNI_02049
+MQTPATPSPHDRPSPVVRPWMAASDVPVTGPDDVEHVVLLSPAGEAVGTEAKATVHRRTE
+DGGTPLHLAFSCHVYDEADRFLLTRRALGKAAFPGVWTNGFCGHPSPGESPAEAVLRRAP
+QELGVEVSDVVEVLPDFRYRAADASGMEEHEICPVFRARMHGDPAPERDEVAEWCWVEPA
+DLAAALAAVPRAFSPWLVEQWQQGAFDAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000512.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000512.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8ac5b32b7247b76854fc4488d823e7db331d32de
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000512.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00672
+M---------SA----------------GREGVVAELEAALSRAAGLAPESAAFAELLAG
+LRTHAGAGKLIRPRLVELGWRAAADGP----VPAAERP--------AVDRLGAAFELLHT
+GLLVHDDVIDRDVVRRGERTVHEATRRRLAARGVPEAEAAHAGTAVALIGGDVLLVEALR
+LAMTCTPDPGRAAPVAAVVLDAATASAAGELEDVLLGLARHTGEEPEPERILAMQRLKTA
+HYTVSAPLRVGGAAGGGGSRRRRGAGEAAAPTWAWPTRWWTTCSGCSAPRSRPASPPTAT
+CARARPPCSPRTAAATPPSAPCSTPAPAT----------PEELEAARRALEAAGAREHAL
+QVAEELTRRAAEHLAVLPLGEAACAEFADACHAVLTRSS
+>KBS0714_MOLHKGIG_02107
+MG--EARTGGEA----------------ALSGVTAELDAALRHAAAQAPGSAAFAELLDS
+LHVHVGAGKLIRPRLVELGWRLATADP----VPPSGRA--------AVDRLGAAFELLHT
+ALLVHDDVIDRDVLRRGQPAVHASARHRLEARGVPAADAAHAGVAVALIAGDVLLTQAFR
+LAATCAADTARAAEAAAVVFDAAAVTAAGELEDVLLGLSRHTGEEPDPDRILAMQRLKTA
+HYTVGAPLRAGALLAGADPDLARAMGEAGADLGA-AYQVIDDVLGVFGDPGETGKSADGD
+LREGKATVLTAHGRRIPAVRALLDAGPAT----------PADIEAARRALEAAGAREHAL
+DVAAELTVRARERIAALPLDETVRAEFADACHAVLTRRS
+>KD337_NAFOICDF_00588
+MNPLAAGIGGAAPWSASAATPGLDDAGRARAAVRAELDRVFAETPLCADAPDSFHLLWAR
+LREAVSGGKLVRPRLVDLGWRTVRRAPASSGVPRGGTGEEEAADLRAVARVGAAFELLHA
+ALIVHDDVIDRDDLRRGRPTVAEQYRRDAVRDGVPAGEAEHVGRSAGIIAGDLLLTAAFR
+LAAASGA-RVRAAEAAESVFRAASAAAAGELEDVLLALHRHTGHHPEAGRILTMERLKTA
+GYSFEEPLRAGALLAGADPAHAEALAEAGALLGV-AYQVVDDVLGTAGDPAVTGKPHDAD
+LREGKATLLTAHGRRDPRARAALDRVARAERHGEDLGELAAAVAEARAALVDAGSVEHAL
+GVAEELVDQARALLDALPMAPAERAEFAATCGQILQREA
+>SA211_MHAAABBN_01814
+MG--EARTGGEA----------------ALSGVTAELDAALRHAAAQAPGSAAFAELLDS
+LHVHVGAGKLIRPRLVELGWRLATADP----VPPSGRA--------AVDRLGAAFELLHT
+ALLVHDDVIDRDVLRRGQPAVHASARHRLEARGVPAADAAHAGVAVALIAGDVLLTQAFR
+LAATCAADTARAAEAAAVVFDAAAVTAAGELEDVLLGLSRHTGEEPDPDRILAMQRLKTA
+HYTVGAPLRAGALLAGADPDLARAMGEAGADLGA-AYQVIDDVLGVFGDPGETGKSADGD
+LREGKATVLTAHGRRIPAVRALLDAGPAT----------PADIEAARRALEAAGAREHAL
+DVAAELTVRARERIAALPLDETVRAEFADACHAVLTRRS
+>TT9_LFPAFLNI_02047
+MG--EARTGGEA----------------ALSGVTAELDAALRHAAAQAPGSAAFAELLDS
+LHVHVGAGKLIRPRLVELGWRLATADP----VPPSGRA--------AVDRLGAAFELLHT
+ALLVHDDVIDRDVLRRGQPAVHASARHRLEARGVPAADAAHAGVAVALIAGDVLLTQAFR
+LAATCAADTVRAAEAAAVVFDAAAVTAAGELEDVLLGLSRHTGEEPDPDRILAMQRLKTA
+HYTVGAPLRAGALLAGADPDLARAMGEAGADLGA-AYQVIDDVLGVFGDPGETGKSADGD
+LREGKATVLTAHGRRIPAVRALLDAGPAT----------PADIEAARRALEAAGAREHAL
+DVAAELTVRARERIAALPLDETVRAEFADACHAVLTRRS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000513.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000513.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3f20fe93198359bd08b88b9a9ca6fc80c8e7c4cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000513.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00673
+M--------P--------------ADAPLYTRTARAAAGRVIRRYSTSFSWACRTLPREA
+RRDVEAIYAMVRVADEAVDGVAQAAGLDSQRVRAALDDYERACEAAMASGFSTDLVLHAF
+GDVARRHGITPELTRPFFASMRADLGVSEHGAESLAAYIHGSAEVVGLMCLQVFLSLPGT
+RARTPAEREAIRAQAARLGAAFQKVNFLRDLAADHDGLGRTYLTGAAPDELTEARKAELV
+AEVRADLAAALPGIRALDPRAGRAVALAHGLFAALADRIETTPAAELARRRVRVPDAQKA
+RIAARVLAEQAGLAVARRRR---------------GGRR-
+>KBS0714_MOLHKGIG_02106
+MAA----PTP--------------SPAALYTRTAHTAAAQVIRRYSTSFSWACRTLPRQA
+RQDVATIYAMVRVADEVVDGVAVAAGLDEAGVRAALDDYERACEAAMASGFATDPVLHAF
+ADVARRHGITPELTRPFFASMRADLGIREHGAESLDAYIHGSAEVVGLMCLQVFLSLPGT
+RARTPGQRQELRAQASRLGAAFQKVNFLRDLAADHHELGRTYLPGAAPGVLTEARKAELV
+AEVRADLDAALPGIRVLDPGAGRAVALAHGLFAALVDRIEATPAAELAHRRVRVPDHQKA
+RIAARVLA--------RGRR---------------GGRR-
+>KD337_NAFOICDF_00589
+MTGTTTPPAPAGPECGTVRARTGETDLELYTATALRVAGEVIGRYSTSFSWACRVLPPDA
+RRDIAAIYAMVRVADEVVDGAAEEAGLPVARVAAGLDAYERACEDAMDTGFSTDLVLHAF
+ADVSRRHGITAELTRPFFVSMRADLTVAEHGEDSLAAYIHGSAEVVGLMCLQVFLSMDGT
+RADGPADRAALRAAASRLGAAFQKVNFLRDLAADHDALGRTYFSGAAPEALTEERKAELL
+ADLDADLDASLPGILALDPRAARAVLLAHGLFAELSRRLAATPAAELARRRVRVPDPVKA
+RIAVRVLAASP-VGIGRRGRPLPAGCAEDLAAHQDGDRRP
+>SA211_MHAAABBN_01813
+MAA----PTP--------------SPAALYTRTAHAAAAQVIRRYSTSFSWACRTLPRQA
+RQDVATIYAMVRVADEVVDGVAVAAGLDEAGVRAALDDYERACEAAMASGFATDPVLHAF
+ADVARRHGITPELTRPFFASMRADLGIREHGAESLDAYIHGSAEVVGLMCLQVFLSLPGT
+RARTPGQRQELRAQASRLGAAFQKVNFLRDLAADHHELGRTYLPGAAPGVLTEARKAELV
+AEVRADLDAALPGIRVLDPGAGRAVALAHGLFAALVDRIEATPAAELAHRRVRVPDHQKA
+RIAARVLA--------RGRR---------------GGRR-
+>TT9_LFPAFLNI_02046
+MAA----PAP--------------IPAALYTRTAHAAAAQVIRRYSTSFSWACRTLPRQA
+RQDVATIYAMVRVADEVVDGVAVAAGLDEAGVRAALDDYERACEAAMASGFATDPVLHAF
+ADVARRHGITPELTRPFFASMRADLGIREHGAESLDAYIHGSAEVVGLMCLQVFLSLPGT
+RARTPGQRQELRAQASRLGAAFQKVNFLRDLAADHHELGRTYLPGAAPGVLTEARKAELV
+AEVRADLDAALPGIRVLDPGAGRAVALAHGLFAALVDRIEATPAAELAHRRVRVPDHQKA
+RIAARVLA--------RGRR---------------GGRR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000514.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000514.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f4f43ec4eb88340464825f58e249222ca4f7a5ea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000514.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00674
+MSAAPNVASGAAAHDDGPRAVVIGGGFAGLATAGLLARDGHRVTLLERNDGLGGRSGRWSAEGFAFDTGPSWYLMPEVID
+RWFRLMGASAAERLDLRRLDPGYRVYFEDHLDA--------------PPVDVRTGHAEE--LVESLEPGAGERLRAYLDS
+AGRVYELAKEHFLYTDFRRPADLARPAVLRALPSLGPQLLGGLRAHVAARFRDPRIRQILGYPAVFLGTSPDRAPAMYHL
+MSHLDLRDGVQYPIGGFAALVDAMADLVREAGVEVVTGAEATRIEVEDA-----------------------ERRRRRRG
+RVTGVVVRQ-DGTERRLSADVVVAAADLHHVQTALLPPAQRVAESAWDRRDPGPSGVLVCVGVRGALPQLAHHTLLFTAD
+WEDNFGRIERGEDLAADTSLYVSRTSATDPGVAPDGDESLFVLVPAPAEPGWGRGGIRVREGDGWRVEREGDAQVEAVAD
+RALDQLARWAGIEDLHERIVVRRTIGPGDFAADVHAWRGSMLGPGHTLAQSAMFRPSVRDADVAGLLYAGSSVRPGIGVP
+MCLISAEVVREELRHAARRDALRAQRRGRSQDDDDGARRGRVAAS--
+>KBS0714_MOLHKGIG_02105
+MSARDTAL--------GPRTVVVGGGFAGLATAGLLARDGHRVTLLERGAVLGGRAGRWSEAGFTFDTGPSWYLMPEVID
+RWFRLMGTSAAERLDLRRLDPGYRVYFEGHLHE--------------PPVDVRTGHAET--LFESLEPGAGRRLRAYLDS
+ASRIYGLAKEHFLYTDFRRPAALAHPDVLRALPALGPQLLGGLRSHVAARFQDPRLRQILGYPAVFLGTSPDRAPAMYHL
+MSHLDLADGVQYPLGGFAALVDAMAEVVREAGVEIRTGVEATAVEVVDRPAPAGRLGRLAARLPRPGAARGDEGRRRRPG
+RVTGVAWRSDDGAAGRLDADVVVAAADLHHVQTRLLPPGRRVAESTWDRRDPGPSGVLVCVGVRGSLPQLAHHTLLFTAD
+WEDNFGRIERGEDLAADTSIYVSRTSATDPGVAPEGDENLFILVPAPAEPGWGRGGIRVRDGQGWRVDRAGDAQVEAVAD
+RALDQLARWAGIPDLAERIVVRRTYGPGDFAADVHAWRGSLLGPGHTLAQSAMFRPSVRDADVAGLMYAGSSVRPGIGVP
+MCLISAEVVRDELRHDARR--VRP------------AGPGGSGT---
+>KD337_NAFOICDF_00590
+MTPTTPAARPAAAPSGSRRVVVIGGGFAGLATAGLLAQDGHRVTLLEKNPVLGGRSGRWSAEGFTFDTGPSWYLMPEVID
+RWFRLMGTSADEALDLRALSPAYRVYFQEHAADDAAAPGDGSTPGARAPLDVVSGREESLALAEELEPGAGGRLAAYLDS
+AERIYALAKRRFLYTDFQDLTELLRPDVLRALPALAPQLLGDLRGFVARRFEDGRLRRVLGYPAVFLGTSPGKAPAMYHL
+MSHLDLADGVQYPIGGFAALVDAMAELVRAAGVEIVTAAEVTAVDVVSDPRPRGRLPRLLDGAPRPWEPRTPAGGRRRSG
+HVRGVSWRDAEGGSHRLDADAVVAAADLHHVQTALLPGDQRVAERTWDRRDPGPSAVLVCVGVRGRLPELLHHTLLFTED
+WDENFRRIDEGEDLQEETSLYVSMTSATDPGVAPEGDESLFLLVPAPAVPEWGRGGVRTPEE-----DRAGDAQVETVAD
+RALAQLARWAGVPDLGERIVVRRTWGPADFTADVHAWRGSLLGPGHVLRQSALFRPPVRDPRVAGLVYAGSSVRPGIGVP
+MCLISAELARDAVSG------VRP----------GGAAPGAPAMAGR
+>SA211_MHAAABBN_01812
+MSARDTAL--------GPRTVVVGGGFAGLATAGLLARDGHRVTLLERGAVLGGRAGRWSEAGFTFDTGPSWYLMPEVID
+RWFRLMGTSAAERLDLRRLDPGYRVYFEGHLHE--------------PPVDVRTGHAET--LFESLEPGAGRRLRAYLDS
+ASRIYGLAKEHFLYTDFRRPAALAHPDVLRALPALGPQLLGGLRSHVAARFQDPRLRQILGYPAVFLGTSPDRAPAMYHL
+MSHLDLADGVQYPLGGFAALVDAMAEVVREAGVEIRTGVEATAVEVVDRPAPAGRLGRLAARLPRPGAARGDEGRRRRPG
+RVTGVAWRSDDGAAGRLDADVVVAAADLHHVQTRLLPPGRRVAESTWDRRDPGPSGVLVCVGVRGSLPQLAHHTLLFTAD
+WEDNFGRIERGEDLAADTSIYVSRTSATDPGVAPEGDENLFILVPAPAEPGWGRGGIRVRDGQGWRVDRAGDAQVEAVAD
+RALDQLARWAGIPDLAERIVVRRTYGPGDFAADVHAWRGSLLGPGHTLAQSAMFRPSVRDADVAGLMYAGSSVRPGIGVP
+MCLISAEVVRDELRHDARR--VRP------------AGPGGSGT---
+>TT9_LFPAFLNI_02045
+MSARDTAL--------GPRTVVVGGGFAGLATAGLLARDGHRVTLLERGAVLGGRAGRWSEAGFTFDTGPSWYLMPEVID
+RWFRLMGTSAAERLDLRRLDPGYRVYFEGHLHE--------------PPVDVRTGHAET--LFESLEPGAGRRLRAYLDS
+ASRIYGLAKEHFLYTDFRRPAALAHPDVLRALPALGPQLLGGLRSHVAARFQDPRLRQILGYPAVFLGTSPDRAPAMYHL
+MSHLDLADGVQYPLGGFAALVDAMAEVVREAGVEIRTGVEATAVEVVDRPAPAGRLGRLAARLPRPGAARGDEGRRRRPG
+RVTGVAWRSDDGAAGRLDADVVVAAADLHHVQTRLLPPGRRVAESTWDRRDPGPSGVLVCVGVRGSLPQLAHHTLLFTAD
+WEDNFGRIERGEDLAADTSIYVSRTSATDPGVAPEGDENLFILVPAPAEPGWGRGGIRVRDGQGWRVDRAGDAQVEAVAD
+RALDQLARWAGIPDLAERIVVRRTYGPGDFAADVHAWRGSLLGPGHTLAQSAMFRPSVRDADVAGLMYAGSSVRPGIGVP
+MCLISAEVVRDELRHDARR--ARP------------AGPGGSGA---
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000518.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000518.fa
new file mode 100644
index 0000000000000000000000000000000000000000..63cbd15e3fe6e17459a66729da8351c3d05a0253
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000518.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00680
+--------------------------------------------------------MGGRLIPELLAAGFDVRAGARNPS
+DLADRPWSEGVEAVELDLTEADLVEAAMQDVHTVLYLVHSMGGGGDFVTQEQRIADIVGTAADTAGVAQLVYLSGLHPDT
+IPVAELSDHMRSRALVAERLEQAATPALTFEAGVIIGSGSTSFEMIRHLAERLPVMPGPSWLKNRVEPLAIRDVLYYLLQ
+ACALPEPVQLRAQIGNGHPQSFASVLVDYAKAAGLSRRIVIPTPFPLQTLAGFWIGTVTPIPVAVALPLAASLAEEAVVE
+DRSVRDLIPDPPGGLTSYMDAVRLALKREKEGPLDVTFDADVHAAADPADPLPSDPAWSGTTVYTDERERESDLPPQDVW
+PVIESVGGANGWYSTPMLWKVRGLADKLVGGPGLIRGRRDQDRLRRGDAVDWWRVEDVEHGRRLTLRAEMKAGGRAWLQM
+STEPRDGGGSVYRQRAIFMPDGLLGRAYWTAILPFHAVVFPEMAANILAEAQRRTTGGERRRPRSLARALVDRLPLRRNP
+LDRGASA--------
+>KBS0714_MOLHKGIG_02099
+--------------MASTQPSPVPAGATPASHTSPLGLSLPDGRGRRVLVTGATGYVGGRLIPELLAAGFDVRAGARNPS
+DLADRPWSDSIEAVELDLTEADLVEAAMQDVHTVLYLVHSMGGGGDFVAQEQRIADIVGTAADTAGVAQLVYLSGLHPDT
+VPVAELSDHMRSRALVAERLERAATPALTFEAGVIIGSGSTSFEMIRHLAERLPVMPGPSWLRNRVEPLAIRDVLYYLLQ
+ACALPEPVQLRAQIGNGHPQSFASVLVDYAKAAGLSRRIVIPTPLPLKTLAGFWIGMVTPIPVAVALPLAASLAEEAVVE
+DRSVRDLIPDPPGGLTSYMDAVRLALKREKEGPLDVTFDADLQSSADPAASLPSDPEWAGTTVYTDERERESDLPAQEVW
+PVIESVGGANGWYSTPLLWKIRGLMDKLAGGPGLTRGRRDPNHLRRGDAVDWWRVEDVEPGRRLTLRAEMKAGGRAWLQL
+STEPREGGGSVYRQRAVFMPDGLLGRAYWTAILPFHAVVFPEMAANILAEARRRHDGGERPRTRGLLRPLVDRLPLRRNP
+LDRRARGAGGAQSRD
+>KD337_NAFOICDF_00594
+MSTPSTSRGSGLTSAAASGDTPAGTGATTAS-LSPLGLALPDGHDRRVLVTGATGYVGGRLIPELLAAGFRVRAGARTPR
+DLEDRPWSDRVEVVELDLEKPDLVKAAMQDVHTALYLVHSMGAGGDFVEQEQKIADIVATAADEAGITQLVYLSGLHPAG
+KPVEELSDHMRSRALVAERLEAAATPALTFEAGVVIGSGSASFEMIRHLSERLPIMPGPSLLKNRVEPIAVRDVLHYLVQ
+ACALEEPVQLHAQIGNGRPQSFASVLVDYAEVAGLSKRIVIPTPLPLSRLAGLWVGVVTPIPVKVALPLAASLAEDAVVE
+DHAIRDVIPAPEGGLTSYKEAVRRALAAEKNGPLDVTFEADVYDSSDPAAPLPSDPEWAGHTVYTDDRERESDLAPEDVW
+PVIESIGGRNGWYSTPLLWKVRGYMDKVVGGPGLMRGRRDQDHLRRGDAVDWWRVEEVDPGHRLTLRAEMKAGGRAWLQL
+TTEPREQGGSVYRQRAIFMPDGLLGRAYWTAILPFHAVVFPEMAANILAEAERRRTGGARRRTRGLVRALADRLPLRRSP
+LDRRAG---------
+>SA211_MHAAABBN_01806
+--------------MASTQPSPVPAGATPASHTSPLGLSLPDGRGRRVLVTGATGYVGGRLIPELLAAGFDVRAGARNPS
+DLADRPWSDSIEAVELDLTEADLVEAAMQDVHTVLYLVHSMGGGGDFVAQEQRIADIVGTAADTAGVAQLVYLSGLHPDT
+VPVAELSDHMRSRALVAERLERAATPALTFEAGVIIGSGSTSFEMIRHLAERLPVMPGPSWLRNRVEPLAIRDVLYYLLQ
+ACALPEPVQLRAQIGNGHPQSFASVLVDYAKAAGLSRRIVIPTPLPLKTLAGFWIGMVTPIPVAVALPLAASLAEEAVVE
+DRSVRDLIPDPPGGLTSYMDAVRLALKREKEGPLDVTFDADLQSSADPAASLPSDPEWAGTTVYTDERERESDLPAQEVW
+PVIESVGGANGWYSTPLLWKIRGLMDKLAGGPGLTRGRRDPNHLRRGDAVDWWRVEDVEPGRRLTLRAEMKAGGRAWLQL
+STEPREGGGSVYRQRAVFMPDGLLGRAYWTAILPFHAVVFPEMAANILAEARRRHDGGERPRTRGLLRPLVDRLPLRRNP
+LDRRARGAGGAQSRD
+>TT9_LFPAFLNI_02039
+--------------MASTQPSPVPAGATPASHTSPLGLSLPDGRGRRVLVTGATGYVGGRLIPELLAAGFDVRAGARNPS
+DLADRPWSDSIEAVELDLTEADLVEAAMQDVHTVLYLVHSMGGGGDFVAQEQRIADIVGTAADTAGVAQLVYLSGLHPDT
+VPVAELSDHMRSRALVAERLERAATPALTFEAGVIIGSGSTSFEMIRHLAERLPVMPGPSWLRNRVEPLAIRDVLYYLLQ
+ACALPEPVQLRAQIGNGHPQPFASVLVDYAKAAGLSRRIVIPTPLPLKTLAGFWIGMVTPIPVAVALPLAASLAEEAVVE
+DRSVRDLIPDPPGGLTSYMDAVRLALKREKEGPLDVTFDADLQSSADPAASLPSDPEWAGTTVYTDERERESDLPAQEVW
+PVIESVGGANGWYSTPLLWKIRGLMDKLAGGPGLTRGRRDPNHLRRGDAVDWWRVEDVEPGRRLTLRAEMKAGGRAWLQL
+STEPREGGGSVYRQRAVFMPDGLLGRAYWTAILPFHAVVFPEMAANILAEARRRHDGGERPRTRGLLRPLVDRLPLRRNP
+LDRRARGAGGAQSRD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000522.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000522.fa
new file mode 100644
index 0000000000000000000000000000000000000000..38dd237bf4bba4bb20adf87d7df3205236a601c3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000522.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00697
+MTAVHHTTRSVSRPAVRGFTTTAVHAGQEPDPLTGAVVPPIYQTSTFVQDGINVLRAGHE
+YSRGSNPTRNGFETQLAALEHGERAFAFASGLAAEDALLRAVLRPGDHIVLGGDGYGGTH
+RLITTVLEPWGVSNTPVDITDPTAVAAAVRPGRTALLWVETPSNPLLGIADLAAWAQIAH
+DAGALLVVDNTFASPYLQRPLDLGADVVVHSTTKYIGGHSDVLGGAVVVADREFRGRALA
+EAVAYQQFAAGAVAGPQDSYLAARGLKTLGLRMDRHGANAAALAGWLQGRPEVAQVFYPG
+LPDHPGHDLAARQMDGFGGIVSVRLAGGEAAARAFAEATELFALSVSLGGVESLLCYSSE
+MTHASVRGTPLAVPTDLVRLSVGIEDVADLQADLEAGLECAARVAVGRGTPSSSAVPRPA
+PAHHRTTRVRTPERTR
+>KBS0714_MOLHKGIG_02086
+MTAVHHTTRSVSRPAVRGFTTTAVHAGQEPDPLTGAVVPPIYQTSTFVQDGINVLRAGHE
+YSRGSNPTRNGFETQLAALEHGDRAFAFASGLAAEDALLRAVLRPGDHIVLGGDGYGGTH
+RLITTVLEPWGVSNTPVDITDPTAVAAAVRPGRTALLWVETPSNPLLGIADLAAWAQIAH
+DAGALLVVDNTFASPYLQRPLDLGADVVVHSTTKYIGGHSDVLGGAVVVADREFRGRALA
+EAVAYQQFAAGAVAGPQDSYLAARGLKTLGLRMDRHGANAAALAGWLQGRPEVAQVFYPG
+LPDHPGHALAARQMDGFGGIVSVRLAGGEAAARAFAEATELFALSVSLGGVESLLCYSSE
+MTHASVRGTPLAVPTDLVRLSVGIEDVADLQADLEAGLECAARVAAGRGAPPSSAVPRPA
+PAHHRTTRARTPERTR
+>KD337_NAFOICDF_00607
+MTAVHHPTRSVSRPAVRGFTTTAVHAGQEPDPLTGAVVPPIYQTSTFVQDGINVLRAGHE
+YSRGSNPTRNGFETQLAALEHGDRAFAFASGLAAEDALLRAVLRPGDHIVLGGDGYGGTH
+RLITTVLEPWGVSNTPVDITDTTAVAAAVRPGRTALLWVETPSNPLLGIADLAAWAQIAH
+DAGALLVVDNTFASPYLQRPLDLGADVVVHSTTKYIGGHSDVLGGAVVVADREFRGRALA
+EAVAYQQFAAGAVAGPQDSYLAARGLKTLGLRMDRHGANAAALAGWLQGRPEVAQVFYPG
+LPDHPGHDLATRQMDGFGGIVSVRLAGGEAAARAFAEATELFALSVSLGGVESLLCYSSE
+MTHASVRGTPLAVPTDLVRLSVGIEDVADLQADLEAGLECAARVAAGRGTPSSSAVPRPA
+PAHHRTTRVRTPERTR
+>SA211_MHAAABBN_01791
+MTAVHHTTRSVSRPAVRGFTTTAVHAGQEPDPLTGAVVPPIYQTSTFVQDGINVLRAGHE
+YSRGSNPTRNGFETQLAALEHGDRAFAFASGLAAEDALLRAVLRPGDHIVLGGDGYGGTH
+RLITTVLEPWGVSNTPVDITDPTAVAAAVRPGRTALLWVETPSNPLLGIADLAAWAQIAH
+DAGALLVVDNTFASPYLQRPLDLGADVVVHSTTKYIGGHSDVLGGAVVVADREFRGRALA
+EAVAYQQFAAGAVAGPQDSYLAARGLKTLGLRMDRHGANAAALAGWLQGRPEVAQVFYPG
+LPDHPGHALAARQMDGFGGIVSVRLAGGEAAARAFAEATELFALSVSLGGVESLLCYSSE
+MTHASVRGTPLAVPTDLVRLSVGIEDVADLQADLEAGLECAARVAAGRGAPPSSAVPRPA
+PAHHRTTRARTPERTR
+>TT9_LFPAFLNI_02025
+MTAVHHTTRSVSRPAVRGFTTTAVHAGQEPDPLTGAVVPPIYQTSTFVQDGINVLRAGHE
+YSRGSNPTRNGFETQLAALEHGDRAFAFASGLAAEDALLRAVLRPGDHIVLGGDGYGGTH
+RLITTVLEPWGVSNTPVDITDPTAVAAAVRPGRTALLWVETPSNPLLGIADLAAWAQIAH
+DAGALLVVDNTFASPYLQRPLDLGADVVVHSTTKYIGGHSDVLGGAVVVADREFRGRALA
+EAVAYQQFAAGAVAGPQDSYLAARGLKTLGLRMDRHGANAAALAGWLQGRPEVAQVFYPG
+LPDHPGHALAARQMDGFGGIVSIRLAGGEAAARAFAEATELFALSVSLGGVESLLCYSSE
+MTHASVRGTPLAVPTDLVRLSVGIEDVADLQADLEAGLECAARVAAGRGAPSSSAVPRPA
+PAHHRTTHARTPERTR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000525.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000525.fa
new file mode 100644
index 0000000000000000000000000000000000000000..12fc06730f6e655b70a60a7a75ebec0b770baf3c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000525.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00700
+MDPDASPRARLTADDPRPGGRPATSTEGPHRQLDQQSSPELWGRLIAAVFALDGVEEGHS
+TVSPATSRAVHLTGRPEERTPEVNLSPGRRWEPVHLHGVDDTSVHLVLAPERGVRLAELG
+WLEPHGYADFGTEWMLYGPRDEAELAVVVGIIEESLAYARG
+>KBS0714_MOLHKGIG_02083
+MDPDASPRVRLTADDPRPGSRPATSTEGPHRQLDQRSSPELWGRLVAAVFALDGVEEGHS
+TVSPATSRALHLTGRPEERTPEVNLSPGRRWEPVHLHGVDDTSVHLVLAPERGVRLAELG
+WLEPHGYADFGTEWMLYGPRDEAELAVVVGIIEESLAYARG
+>KD337_NAFOICDF_00610
+MDPDASPRARLTADDPRPGGRPATSTEGPHRQLDQRSSPELWGRLVAAVFALDGVEEGHS
+TVSPATSRAVHLTGRPKERTPEVNLSPGRRWEPVHLHGVDDTSVHLVLPPERGVRLAELG
+WLEPHGYADFGTEWMLYGPRDEAELAVVVGIIEESLAYARG
+>SA211_MHAAABBN_01788
+MDPDASPRVRLTADDPRPGSRPATSTEGPHRQLDQRSSPELWGRLVAAVFALDGVEEGHS
+TVSPATSRALHLTGRPEERTPEVNLSPGRRWEPVHLHGVDDTSVHLVLAPERGVRLAELG
+WLEPHGYADFGTEWMLYGPRDEAELAVVVGIIEESLAYARG
+>TT9_LFPAFLNI_02022
+MDPDASPRVRLTADDPRPGSRPVTSTEGPHRQLDQRSSPELWGRLVAAVFALDGVEEGHS
+TVSPATSRALHLTGRPEERTPEVNLSPGRRWEPVHLHGVDDTSVHLVLAPERGVRLAELG
+WLEPHGYADFGTEWMLYGPRDEAELAVVVGIIEESLAYARG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000528.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000528.fa
new file mode 100644
index 0000000000000000000000000000000000000000..03261d7ab1860b0dc9388e8c078d3c7ac27f8c34
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000528.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00704
+------MNLDQL--------------------------------------QVLLRRGTPC
+EPTEAGVGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADW
+DDLVLDLHVEDQDHSAQLLRRGEVLAAVTTEPQPVQGCAAEPLGSMRYVPLVAPALLARH
+AAGDVVDLGAMPMMRYNVKDDLQRLALSDAGLDVAPP-----------------------
+--------------------------------TLPVTRLVRLTRAVREAAQRTLEPG
+>KBS0714_MOLHKGIG_02080
+------MNLDQLQALRAIADEGSFEAAAYELDVSASAVSQRIRALEREVGQVLLRRGTPC
+EPTEAGIGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADW
+EDTVLDLHVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAGPLGSMRYVPLASPALLARH
+AADDVVDLGAMPMMRYNAKDDLQRLALSGAGLDIAPPTHLAPSFDGFHRSVRAGLGWGML
+VDAQAVEDVRAGRLVRVPGLDDVLVPLYWQAATLPVTRLVRLTRAVREAAQRTLERG
+>KD337_NAFOICDF_00614
+------MNLDQLQALRAIADEGSFEAAAYELGVSASAVSQRIRALEREVGQVLLRRGTPC
+EPTEAGVGLVRVARHMRVLEQEAWAGLGRMAAGRSVTSLAVPADVLGTWFGPVLAEAADW
+DDTVLDLRVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAEPLGSMRYVPLASPALLARH
+AAGDVVDLGAMPMMRYNAKDDLQRLALSGAGLDVAPPTHLAPSFDGFHRSVRAGLGWGML
+VDAQAVEDVRAGRLVRVPGLDDVLVPLYWQATTLPVTRLARLTQAVREAAQRTLERG
+>SA211_MHAAABBN_01784
+MPKLCFMNLDQLQALRAIADEGSFEAAAYELGVSASAVSQRIRALEREVGQVLLRRGTPC
+EPTEAGVGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADW
+DDTVLDLHVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAEPLGSMRYVPLASPALRARH
+AAGDVVDLGAMPMMRYNAKDDLQRLALSGAGLDVAPPTHLAPSFDGFHRSVRAGLGWGML
+VDAQAVEDVRAGRLVRVPGLDDVLVPLYWQAATLPVTRLVRLTRAVREAAQRTLERG
+>TT9_LFPAFLNI_02018
+MPKLCFMNLDQLQALRAIADEGSFEAAAYDLGVSASAVSQRIRALEREVGQVLLRRGTPC
+EPTEAGVGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADW
+DDTVLDLHVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAEPLGSMRYVPLASPALLARH
+AAGDVVDLGAMPMMRYNAKDDLQRLALSGAGLDVAPPTHLAPSFDGFHRSVRAGLGWGML
+VGAQAVEDVRAGRLVRVPGLDDVLVPLYWQAATLPVTRLVRLTRAVREAAQRTLERG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000529.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000529.fa
new file mode 100644
index 0000000000000000000000000000000000000000..23a6a5d4dbca2d8f1803f2db4c91ee007cd70a26
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000529.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00711
+------------------------------------------------------------
+-----------MDTSTAPGADHGRAADDISYRTRKWVKPEDLNANGTLFGGSLLRWIDEE
+AAIYAIIQLGNPRSVTKLISEINFRSSARQGDMIEMGLRAVEFGRTSLTMRAKVRNIISG
+EVILTIEKIVFVSLDEDGNPVPHGYTDITFDRDRLPQDTAR
+>KBS0714_MOLHKGIG_02055
+------------------------------------------------------------
+-----------MDSTLFTRSADRAAHNDVNFRTRKWVKPEDLNANNTLFGGSLLRWVDEE
+AAIYATLQLGNPRCVTKLISEINFLASAKQGDMIEMGLRATEFGRTSLTMRAKVRNIVTG
+EMILTIDKIVFVSLGEDGKPVPHGFTEITYDRDRLPLDNPL
+>KD337_NAFOICDF_00726
+------------------------------------------------------------
+-----------MATHHAPNLT-AHEDDDVSYRTRKWVKPEDLNANGTLFGGSLLRWIDEE
+AAIYSIIQLGNPRSVTKLISEIEFSASARQGDMIEMGLRAVKFGRTSLTMRAKVRNIVTG
+EVILTIDKIVFVSLDEEGRPQPHGYTDITYDRDRLPLDTSR
+>SA211_MHAAABBN_01761
+------------------------------------------------------------
+-----------MDSTLFTRSADRAAHDDVNFRTRKWVKPEDLNANNTLFGGSLLRWVDEE
+AAIYATLQLGNPRCVTKLISEINFLASAKQGDMIEMGLRATEFGRTSLTMRAKVRNIVTG
+EMILTIDKIVFVSLGEDGKPVPHGFTEITYDRDRLPLDNPL
+>TT9_LFPAFLNI_01989
+MPAATVKPSTGTSRQVASGVAGSGWGRMVIGRVPPVWSVADPSGDPTARSSTSPHRAPSL
+VPASASLYRGAMDSTLFTRSADRAAHDDVNFRTRKWVKPEDLNANNTLFGGSLLRWVDEE
+AAIYATLQLGNPRCVTKLISEINFLASAKQGDMIEMGLRATEFGRTSLTMRAKVRNIVTG
+EMILTIDKIVFVSLGEDGKPVPHGFTEITYDRDRLPLDNPL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000530.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000530.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b8378e4eb644c23096b87243f047220141669cbf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000530.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00715
+MTLTPPHAPAL--------PAGASAHIRAECITLTLGDRTVLDQADVTVSAGSRLAIVGENGRGKTTLLHVLAGTLAPDA
+GTVTRAGTLALVEQDLDADDD---RTVGDLIHDAVGESLAVLDRLEAATRALAEG--RPGADDDYARALETATALEAWDA
+ERRIDVALEGLSACTDRTRPLNSLSVGQRYRVRLAVVLGSAVDLLLLDEPTNHLDAGALEHLTRALREHPGGVAVVTHDR
+ALLKDVAETFLDLDPTSDGRPRQYAGGYAGWEKGRSAERAAWEQAHEQQVAEHAALAEAAEAARGRL-QDRWRPDKGTGK
+HQRATRAAGVVQAFNRRVRDLEAHEVTVPEPPRALAWPASSTRAARP---------------------LLNAEGVDVAGR
+LRGPVSADLTGGDRLLLTGPNGAGKSTLLHVLAGRLDPTAGRVLRHTGARIALLTQEAPAWNPRHTARQAFEVHLHRRGL
+LADDDG--------GAPPLASLGLLEPRSMDAPVGRLSQGQQRRLHLALCLAERPDLLMLDEPSNHLSATLVDELTEALR
+ATRSAVVVATHDRQMLRDLSDWPRLELTAEAVAR
+>KBS0714_MOLHKGIG_02241
+MTSGPP-SPAL--------PAGPAAHLRGEHLTVSLGGHRVLTDATVRINAGSRLGIVGENGRGKTTLLHVLTGRITPDV
+GRVTRAGTLAFVPQALRARADGRSRTVGDLVRDALTGPHAALEALDAAAAALAEAPDDAGAGHRYSTALERAHLYDAWDA
+GRRVDMDLEGLHACTDREHPLTSLSVGQRHRVRLAVTLGSRPDLLLLDEPTNHLDDVALDFLTRRLVEHPGGVAVVSHDR
+ALLRAVCTDIVDLDPSQDGRPRRYSGGYAGWAKGRRRARAAWEQEYAEQNAERERLELAVEDAREQM-QGSWRPPKGTGK
+HQRSSRSAGIVQMFNRRFDELEAHRITVPEPPLRLDWPFADMPDGDPRDGADAAAGTAGGPGTAGDDVLLTADAVRVAGR
+LEQPMGAALVPGGRVLVTGPNGAGKSTLLRVLAGDLEPTSGLVTVGADVRVRLVAQETPAWDEERTAAAVFEEHVRRVG-
+-ADEAGVDDLGRPLPAPTLPSLGLLTAEAADTPVGRLSQGQQARLHLAMVLIERPHVLLLDEPTNHLSPALVDEMTEALQ
+VTEQAVVVVTHDRQMLADLADWPRVELRTDAAAV
+>SA211_MHAAABBN_01943
+MTSGPP-SPAL--------PAGPAAHLRGEHLTVSLGGHRVLTDATVRINAGSRLGIVGENGRGKTTLLHVLTGRITPDV
+GRVTRAGTLAFVPQALRARADGRSRTVGDLVRDALTGPHAALEALDAAAAALAEAPDDAGAGHRYSTALERAHLYDAWDA
+GRRVDMDLEGLHACTDRERPLTSLSVGQRHRVRLAVTLGSRPDLLLLDEPTNHLDDVALDFLTRRLVEHPGGVAVVSHDR
+ALLRAVCTDIVDLDPSQDGRPRRYSGGYAGWAKGRRRAQAAWEQEYAEQNAERERLELAVEDAREQM-QGSWRPPKGTGK
+HQRSSRSAGIVQMFNRRFDELEAHRITVPEPPLRLDWPFADMPDGDPRDGADAAAGTAGGPGTAGDDVLLTADAVRVAGR
+LEQPMGAALVPGGRVLVTGPNGAGKSTLLRVLAGDLEPTSGLVTVGADVRVRLVAQETPAWDEERTAAAVFEEHVRRVG-
+-ADEAGVDDLGRPLPAPTLPSLGLLTAEAADTPVGRLSQGQQARLHLAMVLIERPHVLLLDEPTNHLSPALVDEMTEALQ
+VTEQAVVVVTHDRQMLADLADWPRVELRTDAAAV
+>TT9_LFPAFLNI_02173
+MTSGPP-SPAL--------PAGPAAHLRGEHLTVSLGGHRVLTDATVRINAGSRLGIVGENGRGKTTLLHVLTGRITPDV
+GRVTRAGTLAFVPQALRARADGRSRTVGDLVRDALTGPHAALEALDAAAAALAEAPDDAGAGHRYSTALERAHLYDAWDA
+GRRVDMDLEGLHACTDRERPLTSLSVGQRHRVRLAVTLGSRPD-LLLDEPTNHLDDVALDFLTRRLVEHPGGVAVVSHDR
+ALLRAVCTDIVDLDPSQDGRPRRYSGGYAGWAKGRRRARAAWEQEYAEQNAERERLELAVEDAREQM-QGSWRPPKGTGK
+HQRSSRSAGIVQMFNRRFDELEAHRITVPEPPLRLDWPFADRPDGDPRDGADAAAGTAGGPGTAGDDVLLTADAVRVAGR
+LEQPMGAALVPGGRVLVTGPNGAGKSTLLRVLAGDLEPTSGLVTVGADVRVRLVAQETPAWDEERTAAAVFEEHVRRVG-
+-ADEAGVDDLGRPLPAPTLPSLGLLTAEAADTPVGRLSQGQQARLHLAMVLIERPHVLLLDEPTNHLSPALVDEMTEALQ
+VTEQAVVVVTHDRQMLADLADWPRVELRTDAAAV
+>TT9_LFPAFLNI_02213
+M----PTSRSLRSCVWNGTPQGHAAHIRAESIHITLGDRHVLNGVDVTVSVGSRLAIVGDNGRGKTTLLHLLAGILQPDS
+GVVTQAGSLVLVKQDMATEGD---RTVGDLIAEATGPSKSALEALDATSAALAEGDDAADA---YSAALERATLLDAWDA
+ERRVDIALEGLNACSDRDRVLSTLSVGQRYRVRLAVALGSTPDLLLLDEPTNHLDAAGLSFLTERLRDHAGGLALVSHDR
+ALLRDVATTFLDLDPTRDGRPRTYAGGYQGWVEGRQRERVSWEQDHAAQVARHAQLTRAAAEARSRLSQGGWRPDKGTGK
+HQRATRAAGVVQAFNRRVEDLERHEIDVPEPPLRLAWPKSSARRGMS---------------------IVNASMLTVERR
+LDTPVSIGVNGGDRLVVTGPNGAGKSTLLAVLGQRLVPTTGYVQVNPSARIALLSQEVPDWDRTSPAHVAYETYLGKLGC
+RSQ------------APSLGSLGLLEASATSTPVGRLSQGQQRRLHLALCLAQDPDLLLLDEPTNHLSSSLVDDITTELL
+QTPCAVIVATHDRQMLDDLADWPHLDLDPKDMP-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000532.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000532.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c6f54bfa1111e730b71e2174b89aad138a3a226f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000532.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00728
+MRATTH----TPVEELETDDEHETPWWADRAVLIPIASGVAFVAGLACEWSGAQSAALVLFWVGLLLGASTFVPGALRKL
+A-TGKLGIALLMTMSATGAVILGHVEEAAALAFLYSIAEALEDRAMDRARAGLRALLKLVPQSATVLTDGHSASVPARDL
+AAGQVMLIRPGERIATDGIVRSGHSSVDTSAITGESIPVEVGPGDEVSAGAINAAGALQVEATAPGTDNSLTTIVSLVER
+AQAEKGQRARLADRIARPLVPGVLVLAVLVALIGSLAGDPQTWITRALVVLVAASPCALAIAVPITVVSAVGSASKFGVI
+IKSGAIFERFGDIGHVAFDKTGTLTRNQPTVTAVVPAADVTEQQVLAWAAALEQHSTHPLATAITHAAPHNPRRPGHHRG
+SRPRNPRHRRRRRSAGRQPPLGRPR----------------------------------------RPHLP----------
+---------------------------------------------------------GP---------------------
+--------------------------------------------------------------------------------
+----------------
+>AS2_ACLBLIBL_00729
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------MLVGSPRWVDPGDLTYRVRDLEAQGMTVVVVHRDGAVAGAIGVRDELRPEVPEVITTLAGQG
+IDVTMLTGDNERTARALAAQAGISDVRAELRPEGKSAAVGELSVRRPTAMIGDGINDAPALAAADVGIAMGATGSDAAIE
+SADIAFTGQDLRLLPQAIAHARRGRRIVNQNIVLSLLIIAALPPLAITGVLGLAAVVLIHEVAEVLVILNGLRAARTHQP
+TRGH------------
+>AS2_ACLBLIBL_02365
+--------------------------------MVPVFSGVAFLTGLVLEWAGLEVPALVLFWIGLLLGASTFTPGAIRKL
+F-KGKLGIGLLMTISAVGAVILGYVEEAAALAFLYSIAEALEDKAMDRARGGLRALLKLVPETATIRRDGASVEVPAKDL
+AVGQLMLVRPGERIATDGIVRTGRSSLDTSAITGESIPVEVEPGDTVSAGAINTAGALEVETTAAGTDNSLTTIVDLVEK
+AQADKGDRARLADRIARPLVPGVLILAALVAIIGSLLGDPELWITRALVVLVAASPCALAISVPLTVVAAIGSASKFGVI
+IKSGAVFERFGVIRHVAVDKTGTLTRNEPAVTAVLTAEGVTEKQALAWAAALEQHSTHPLAAAITAAAPGAPAADG----
+-VTEQAGHGIEGTLDGARITVGSPRWLDAGTLGEQVAGLEEQGMTVVIVHRDGTPVAAIGVRDELRPEVPEVVRTLAAQG
+IGVTMLTGDNARTARALAAQAGIGDVRAELRPEDKAAAIAELGEKGAVAMIGDGINDAPALAAADIGIAMGATGSDAAIE
+SADVAFTGHDLRLLPRAFDHARRGRHIINQNLILSLLIITALLPLALFGVLGLAAVVLVHEIAEVVVILNGLRAARTRKS
+AA--------------
+>KBS0714_MOLHKGIG_00608
+MSSACGCEA--PTPGAPEEPEEHRPWWRDAAILLPVLSGVAFIAGLVLEWSGAGLVATVVFWVGLVLGAWTFVPGALRGL
+FTRGRLGIGLLMTISAIGAVILGYIEEAAALAFLYSIAEALEDKAMDRARAGLRALLKLVPETATIRQGGATVQVEAKDL
+HPGQVLVVRPGERIATDGIVRTGRSSLDTSAITGESIPVEVGPGDTVSAGSINTSGALEIDATAAGTDNSLTTIVHLVEQ
+AQTEKGARARLADRIAKPLVPGVLVLAVLVAALGSLFGDPELWITRALVVLVAASPCALAIAVPVTVVSAIGAASRFGVV
+IKSGAAFERLGGIRHLAVDKTGTLTRNQPTVTAVLTTPGLTEDQVLGWAAALEQHSTHPLAAAIIAAAPDAPGAKA----
+-VTETAGHGITGRIDGATITVGSPRWLDPGPLAAQVQQLEDQGMTVVIIHRDGTVAGAIGVRDELRPEVPAVVTTLTGQG
+IGLTMLTGDNARTARAIAAQAGIGDVRAELRPEDKAAAVGQLTGTRPTAMIGDGINDAPALAAAEVGIAMGATGSDAAIE
+SADVAFTGHDLRLIPQALAHARRGRAIMNQNIVLSLLIIGVLLPLAITGMLGLAAVVLVHEVAEVIVIGNGLRAATTRRT
+ALASLTDRQAQRSTVG
+>SA211_MHAAABBN_01768
+MSAACGCEAPTPTPGAPEEHEEHRPWWRDAAILLPALSGLAFLTGLVLEWSGAGLVATVVFWVGLVLGAWTFVPGALRGL
+FTRGRLGIGLLMTISAIGAVILGYIEEAAALAFLYSIAEALEDKAMDRARAGLRALLKLVPETATIRAGGATVEVEAKDL
+RPGQVLVVRPGERVATDGIVRTGRSSLDTSAITGESIPVEVGPGDTVSAGSINTAGALEIDATAAGTDNSLTTIVHLVEQ
+AQAEKGDRARLADRIAKPLVPGVLILAVLVAALGSLLGDPELWITRALVVLVAASPCALAIAVPVTVVSAIGAASRFGVV
+IKSGAAFERLGGIRHLAVDKTGTLTRNQPTVTAVLAAPGITEDQVLGWAAALEQHSTHPLAAAITAATPDTPAAEG----
+-VTETAGHGITGRLDGATVTVGSPRWLAPGPLAAQVQGLEDQGMTVVIIHRDGAVAGAIGVRDELRPEVPTVVTTLTGQG
+IDLTMLTGDNARTARAIADQAGIDDVRAELRPEDKATAVHQLTGTRPTAMIGDGINDSPALAAAEVGIAMGATGSDAAIE
+SADVAFTGHDLRLIPQALAHARRGRAIINQNIILSLLIIAVLLPLAITGVLGLAAVVLVHEVAEVIVIGNGLRAATTRRT
+ALEPLTDRQAQPATTG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000533.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000533.fa
new file mode 100644
index 0000000000000000000000000000000000000000..44a2c8a8ad415c21419313b96d021c939ef801a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000533.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00760
+MPT------------SDTLAS--GRPAHSTDDRRPRRSSAGSGLARVAVFAALMAVLGLV
+PPVPVAGIPAPIVLQNLAVTLAGVILGPWRGAAAILLFNVLVALGLPLLTGGRGGLGVFV
+GPSSGFILGYVVAAAAVGLVFWALTGRARPGLRPGRVLAAALVAGLVGMVVL-YAAGAVG
+FIVAAHMEPGAAVLAMGAFVPGDTVKVVLAALLVTGLWKAYPRAFR
+>KBS0714_MOLHKGIG_02058
+MSTSVPSSHDGHVRPAATTTA--DRP---TDAGRPRRGSAGGSLARIAVMTALMAVLGLV
+PPIAVAGVPAPIVLQNIAVILAGVILGPWRGAASMALFAGLVALGLPLLSGGRGGLGVFA
+GPTAGFILGWIPSALIVGLIFWALTSRARPGLDAGRVALGAAVAGLIGGVVMVYFFGVLG
+FVGIAGMEFGAAVLSMAPFVPGDLIKLVVSVILIVGLWKAYPRAFR
+>KD337_NAFOICDF_00723
+MTS-----------PSAPQTAVVDAP----ATHRPRR-SPGADLARIAVMAALIAVLGAM
+PGIPVPGIPTPITLQTLGVMLAGLVLGAWRGAASVALFHLLVALGLPLLAGGRGGAAVFV
+GPSAGFLWGWIPGAFVVGLLFHLYLRGRRDGRNTGGLVAAALTACVVGGIAVIYLFGIPG
+MNLFGGVPLDKAAIGSLAFIPGDLLKAVVAALLAAGLWKAYPRAFA
+>SA211_MHAAABBN_01764
+MSTSVPSSHDGHVRPAATTTA--DRP---TDAGRPRRGSAGGSLARIAVMTALMAVLGLV
+PPIAVAGVPAPIVLQNIAVILAGVILGPWRGAASMALFAGLVALGLPLLSGGRGGLGVFA
+GPTAGFILGWIPSALIVGLIFWALTSRARPGLGAGRVALGAAVAGLIGGVVMVYFFGVLG
+FVGIAGMEFGAAVLSMAPFVPGDLLKLVVSVILVVGLWKAYPRAFR
+>TT9_LFPAFLNI_01994
+MSTSVPSSHDGHVRPAATTTA--DRP---ADAGRPRHGSAGGSLARIAVMTALMAVLGLV
+PPIAVAGVPAPIVLQNIAVILAGVILGPWRGAASMALFNALVALGLPLLTGGRGGLGVFV
+GPSVGFILGWIPSAMIVGLIFWALTSRSRPGLSAGRIALAAAVAGLIGGVIMVYVFGAFG
+FVGVQGMEFGAAMLSMAVFVPGDLTKLVIAVLLCAGLWKAYPRAFR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000536.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000536.fa
new file mode 100644
index 0000000000000000000000000000000000000000..69b5dfd06cb66a872903f1ab546ddc57e3488911
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000536.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00769
+M--TPPAPAPPPAAAPGA--------LSGVSGLTSAEVAEREAAGLTNRQSKDTSRSLAEILRVHVLTLFNLAIALCAVV
+VISLGRWLDLLFSLAAIANVVIGVVQEYSAKRKLDRIALLHQDDAVVVRDGARVSLPMARIVRDDVVVLRRGDQVPVDGE
+VLASDGLDLDEALLTGENDPVPKAPGDAVLSGSSVVAGTGLMRATAVGPASHAARLSAEARRFSAIRSELRGALEKVARW
+LTIGLVPIIAVIVHGQMTAVGGWAHALAQPREAALEPALIASVAAVTSMIPQGLALMTTIAFAVSALKLAQHEVLIQEQP
+AVEVLARVDTVCLDKTGTLTEGGVRFHELLAPASASPSTSTSTDDDGAPADVDAAARAVLAWFGADPDANPTAAALHEPF
+ADAPPHEPADHVAFSSARRWSAVAFGPEVGAA----TGTWLLGAPEALLGDADARPGEAGTGRDDVAAVRAQADALSDEG
+LRVLLLARTDAPLAGNALPAGRVPAAVVTFRENVRPDAAETLGYFHAQGVRTVVISGDSPRTVAAVAREVGMDVPGHARD
+GRTLPEDPEALADVMAEHDVFGRVSPDQKKAMVAALQSRGHVVAMTGDGVNDALALKTADLGIAMGNAAPATKAVSRMVL
+LDGRFDRLPAVLGEGRQVIANMERLAHIYLTKTTYALLFGVVFSLLAWQFPLLPRQASTVDFIMIGLPTFFLALLPNPRR
+YVPGFLGRALRFAIPSGVVILLSMVALQVYVR-LAADHVDLAQQQTAFMITLTLVGLWVLSVMSRPLTRRVVLLVLAMYA
+VLAAVVLVPASRWYHQMEVPPADVLVAALVIAAVGCALIELIHQVHRRHVA----RVLAAAGA
+>KBS0714_MOLHKGIG_02053
+M--ASPSPASAHPSAPESGTGLGFTGVEGITGLTASEVAEREAAGLVNVQSRDTSRSLGQILRVHVFTLFNLAIALCAVV
+VILMGRWLDLLFSLAAVANVVIGVVQEYSAKRKLDRIALLHQDDVLVIRDGARVPLPMAQIVRDDVVVLRRGDQVPVDGE
+VLVSDGLDMDEALLTGENDPVPKTPGDAVLSGSAVVAGAGLVRATAVGSASHAARLSAEARRYSAIHSELRGALEKVARW
+LTIALVPIIAVIVHGQMTAVGGWSLALSQPREAALEPALIASVAAVTSMIPQGLALMTTIAFAVSALKLAQQEVLIQEQP
+AVEVLARVDTVCLDKTGTLTEGGVRFDRLAAPASA--DASPDAHDDGAPAEVGDGARAVLAWFGADPDVNPTAAALREPF
+TAVPAVDPAAQVAFSSARRWSAVAFGPEAGAA----AGTWLLGAPEALV-------DERLLGPDAAEAVRAQVHADADAG
+RRVLLLARTDEPLIGDALPAGGVPVAVVTFRENVRPDAAETLGYFHAQGVRAVVISGDSPRTVAAVAREVGLEVAGQAYD
+GRTLPDDPDALADVMEEHSVFGRVSPDQKKAMVQALQSRGHVVAMTGDGVNDALALKTADLGIAMGNAAPATKAVSRMVL
+LDGRFDRLPRVLGEGRQVIANMERLAHIYLTKTTYALLFGVVFSLFAWQFPLLPRQASTVDFIMIGAPTFFLALLPNPRR
+YVPGFLGRALRFAIPSGAVILLSMVALQTYVR-LTAGDVDLARQQAAFMITLTLVGLWVLSVMSRPLSARVVVLILAMYA
+VLAAVVLVPVSRWYHQMEVPPTDVLVAALVIAAVGCGLIELIHQVHRRHVA----RMLAAAGA
+>KD337_NAFOICDF_00126
+MTHTPPSPAPAADAGPAA-----------LAGLTSAQVAERVAAGRVNVQPKDTSRSFGTILRSHVLTLFNLVIALCATV
+IVVLGRWFDLLFSLAAVANVVIGVVQENSARRALDRIALLHQDGVLVVRDGARREVRIEEVVLDDVVVLRRGDQVPVDGA
+VLTSEGLDVDESLLTGESDPVPKAPGDAVLSGSAVVAGTALVRATAVGADSHAAKLAVQARRFTRAHSELRAALEKVARW
+LTIALVPIVAVILHGQVTAAGGWSRVLGSEDQPALEAALVATVAAVTAMIPQGLALMTTISFALAALKLARRAVLIQEQP
+AVEILARVDTVCLDKTGTLTEGGIVFHGAHAPVGA--PALP--HDDDAAVALDPGARAVLAWFGADPDANPTAAALREPF
+PAAPASSPTGVVPFSSVRRWSAVTFGPDADAAHPGMAGTWLLGAPEALA-------DAAHLGPERTAALTEACTAPADRG
+LRTVLLCRASDAPAGETLPAGREPVAVLTFAEDVRPDAAQTLGYFREQGVAVKVISGDSPRTVAAVARAVGMEVPGDAVD
+GRTLPADPAELADVLESHEVFGRVAPEQKQAMVAALQSRGHVVAMTGDGVNDALALKTADLGIAMGNAAPATKAVSRMVL
+LDGRFDRLPDVLREGRQVIANMERLAHIYLTKTSYALLFGLVFSLLAWPFPLLPRQASTADFLMIGAPTFFLALLPNPRR
+YVPGFLRRALLFAVPAGVTIVAAMLAVSWYARHLSSKPVDTAQLQTASLITLTLLGLWVLTCISRPLRPLMCGVVAGMYA
+LLAAAVLVPASRWYHQMELPAPDLLAASLAIALGGCVVVEAVHRIHHARVTVPGRR---AAEG
+>SA211_MHAAABBN_01759
+M--ASPSPASAHPSAPESGTGLGFTGAAGITGLTAAEVAEREAAGLVNVQSRDTSRSLGQILRVHVFTLFNLAIALCAVV
+VILMGRWLDLLFSLAAVANVVIGVVQEYSAKRKLDRIALLHQDDVVVIRDGARVPLPMARIVRDDVVVLRRGDQVPVDGE
+VLVSDGLDMDEALLTGENDPVPKTPGDAVLSGSAVVAGAGLVRATAVGSASHAARLSAEARRYSAIHSELRGALEKVARW
+LTIALVPIIAVIVHGQMTAVGGWSLALSQPREAALEPALIASVAAVTSMIPQGLALMTTIAFAVSALKLAQQEVLIQEQP
+AVEVLARVDTVCLDKTGTLTEGGVRFDRLTAPASA--DASPDAHDDGAPAEVGDGARAVLAWFGADPDVNPTAAALREPF
+TAVPAVDPAAQVAFSSARRWSAVAFGPEAGAA----AGTWLLGAPEALV-------DERLLGPDAAEAVRAQVHADADAG
+RRVLLLARTDAPLIGDALPAGGVPVAVVTFRENVRPDAAETLDYFHAQGVRTVVISGDSPRTVAAVAREVGLEVAGQAYD
+GRTLPDEPGELAAVMAEHDVFGRVSPDQKKAMVQALQSRGHVVAMTGDGVNDALALKTADLGIAMGNAAPATKAVSRMVL
+LDGRFDRLPRVLGEGRQVIANMERLAHIYLTKTTYALLFGVVFSLFAWQFPLLPRQASTVDFIMIGAPTFFLALLPNPRR
+YVPGFLGRALRFAIPSGAVILLSMVALHAYVR-LTAGDVDLARQQAAFMITLTLLGLWVLSVMSRPLSARVVVLILAMYA
+VLAAVVLVPASRWYHRMEVPPTDVLVAALVVAALGCGLIEVIHQVHRRHVA----RVLAAAGA
+>TT9_LFPAFLNI_01987
+M--ASPSPASAHPSAPESGTGLGFTGVAGITGLTAAEVAEREAAGLVNVQSRDTSRSLGQILRVHVFTLFNLAIALCAVV
+VILMGRWLDLLFSLAAVANVVIGVVQEYSAKRKLDRIALLHQDDVVVIRDGARVPLPMAQIVRDDVVVLRRGDQVPVDGE
+VLVSDGLDMDEALLTGENDPVPKTPGDAVLSGSAVVAGAGLVRATAVGSASHAARLSAEARRYSAIHSELRGALEKVARW
+LTIALVPIIAVIVHGQMTAVGGWSLALSQPREAALEPALIASVAAVTSMIPQGLALMTTIAFAVAALKLAQQEVLIQEQP
+AVEVLARVDTVCLDKTGTLTEGGVRFDRLTAPASA--DASPDAHDDGAPAEVGDGPRAVLAWFGADPDVNPTAAALREPF
+TAVPAVDPVAQVAFSSARRWSAVAFGPEAGAA----AGTWLLGAPEALV-------DEWHLGPDAAEAVRAQVHADADAG
+RRVLLLARTDEPLIGEALPAGGVPVAVVTFRENVRPDAAETLDYFHAQGVRTVVISGDSPRTVAAVAREVGLEVAGQAYD
+GRTLPEDPGALADVMAEHDVFGRVSPDQKKAMVQALQSRGHVVAMTGDGVNDALALKTADLGIAMGNAAPATKAVSRMVL
+LDGRFDRLPRVLGEGRQVIANMERLAHIYLTKTTYALLFGVVFSLFAWQFPLLPRQASTVDFIMIGAPTFFLALLPNPRR
+YVPGFLGRALRFAIPSGAVILLSMVTLQTYVR-LTAGDVDLPRQQAAFMITLTLLGLWVLSVMSRPLSARVVVLILAMYA
+VLAAVVLVPASRWYHQMEVPPTDVLVAALVIAALGCGLIEIIHQVHRRHVA----RVLAAAGA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000539.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000539.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6e9c54fd0cd5d51d402fe3f954a4727b9c25a1c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000539.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00780
+MDVQQFFADLSDVPWLLTTLDLIGIFFFATSGALLASRKEFDLVGSMALALLAGLGGGFT
+RDILLDRGLPASLENPIYLAPPVLVSLLVYVKALHPNRLNLTITLFDAGGLALFTVSGVL
+IAHSMDVHPVSTVVVAMVAALGGGVLRDIVANEVPSIFDPRGVYVMPTFVGATVATIAAM
+NGVLNAFTGFLIAFLIFAVRMLAYRYQWRLFGADISQDKESLDRLRRLATQAQDAAARRV
+ERARERRLRSASGPGGMDVGEAEAIADRAVHHPPAPAGYHYDAVEDAYTRDHAFDDDGEP
+GSASYGPRQEYEDQVRVDEYDPETQTITVIDPASRQQVRLDPATGVMDVTDLRTGRTRSY
+DDPEHDWIADDAEDDARG
+>KBS0714_MOLHKGIG_02036
+MDVQQFFATLTDVPWLLTTLDLIGIFFFATSGALLAARKQFDLVGSMALSLLAGLGGGFT
+RDILLDRGLPASLENPVYLAPPLLVSLLVYVKVIHPNRLNLTITLFDAAGLALFTVSGVL
+LAHSMGVHPVSTVVIAMVTALGGGVLRDIVANEVPSIFDPRGVYVLPTFLGAVLATVVAM
+NGALNAFTGFLIAFLIFAVRMIAYRYQWRFFGAEISQDKESLARLRRLATQAQEAAARRV
+ERTLERRLRSPGAP--------------------------------------AFPDDDAD
+G--SYGPRQEYEDQVRVDDYDPQTQTITVVDPASHQQVRLDRGTGVMDVTDLRTGRTRSF
+DDPEHDWIADDPEDE-KG
+>KD337_NAFOICDF_00747
+MDVQQFFATLTDVPWLLTTLDLIGIFFFATSGALLAARKQFDLVGSMALSLLAGLGGGFT
+RDILLDRGLPASLENPVYLAPPVLVSLLVYVKLIHPNRLNLTITLFDAAGLALFTVSGVL
+LAHSMGVHPVSTVVIAMVTALGGGVLRDIVANEVPSIFDPRGVYVLPTFLGAVLATVVAM
+NGALNAFTGFLIAFLIFAVRMIAYRYQWRFFGAEISQDKESLERLRRLATQAQEAAARRV
+ERTLERRLRAPGAP--------------------------------------AFPDDDTH
+G--SYGPRQEYEDQVRVDDYDPQTQTITVVDPASHQQVRLDRGTGVMDVTDLRTGRTRSF
+DDPEHDWIADDPEDS-RD
+>SA211_MHAAABBN_01743
+MDVQQFFATLTDVPWLLTTLDLIGIFFFATSGALLAARKQFDLVGSMALSLLAGLGGGFT
+RDILLDRGLPASLENPVYLAPPLLVSLLVYVKVIHPNRLNLTITLFDAAGLALFTVSGVL
+LAHSMGVHPVSTVVIAMVTALGGGVLRDIVANEVPSIFDPRGVYVLPTFLGAVLATVVAM
+NGALNGYTGFLIAFLIFAVRMIAYRYQWRFFGAEISQDKESLERLRRLATQAQEAAARRV
+ERTLERRLRSPGAP--------------------------------------AFPDDDTH
+G--SYGPRQEYEDQVRVDDYDPQTQTITVVDPASHQQVRLDRGTGVMDVTDLRTGRTRSF
+DDPEHDWIADDPADP-RD
+>TT9_LFPAFLNI_01971
+MDVQQFFATLTDVPWLLTTLDLIGIFFFATSGALLAARKQFDLVGSMALSLLAGLGGGFT
+RDILLDRGLPASLENPVYLAPPLLVSLLVYVKVIHPNRLNLTITLFDAAGLALFTVSGVL
+LAHSMGVHPVSTVVIAMVTALGGGVLRDIVANEVPSIFDPRGVYVLPTFLGAVLATVVAM
+NGALNGYTGFLIAFLIFAVRMIAYRYQWRFFGAEISQDKESLERLRRLATQAQEAAARRV
+ERTLERRLRSPGAP--------------------------------------AFPDDDTH
+G--SYGPRQEYEDQVRVDDYDPQTQTITVVDPASHQQVRLDRGTGVMDVTDLRTGRTRSF
+DDPEHDWIADDPADP-RD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000543.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000543.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6e744edba5dac34015edd3737d6ec78d027be614
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000543.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00787
+MTELDPATPRPSGTRADAPPRTDVALRPVAADDADFLWTWIHGAEDPEWKWWDAPYFHAA
+DTAAPPSRADFDADHARRRVGDPDVRVVTVDGTPVGLVTRTEQHPAGSGWWELGILLFDP
+TTWGRGVGRAALTLWSDASFAETDAHLLSLVTWSGNARMIASAVRVGYTEVARIPEARSW
+EGRRWDSVRLALLRRDWDSARASV------------------------------------
+------------------------------------------------------------
+------------------------------------------------------
+>KBS0714_MOLHKGIG_02033
+MTDLDPATPRPSGTRADAPPRTDVALRPVAADDADFLWTWIHGAEDPEWKSWDAPYFHAA
+DTAAPPSRADFDADHARRRVGDPDVRVVTVDGTPVGLVTRTEQHPAGAGWWELGILLFDP
+TTWGRGVGRAALTLWSDASFAETDAHLLSLVTWSGNARMIASAVRVGYTEVARIPEARSW
+EGRRWDSVQLAVLRRDWWPASTDG------------------------------------
+------------------------------------------------------------
+------------------------------------------------------
+>KD337_NAFOICDF_01226
+M-DTHRSTPV-------------VALRPVEAGDEEFLWTWIHGTPDAEWKRWDAPYFHAA
+EQAAPMGRAAFARSFAPWP-DDADRRIITADGAAIGLVTRHEEAPAGGGWWELGILLFDP
+SRWGGGIGTRALAAWTEATLTETDAHVLTLTTWSGNARMAGAAERAGFRMCARVPESRAW
+DGRRWDSLRFALLRGDHEGEQASAPEPPARRPELADLTVVTGRIPDAAALRALYDAVGWT
+AYTRNPDALAAGVAGSACVATAWAGQELVGLARVVSDGHTIAYLQDVLVHPERRRQGVAG
+KLLDAVFAPFAHVRQQVLITDEEPGQRAFYEACGFRQFGGGGPVPGRTFVRFAG
+>SA211_MHAAABBN_01740
+MTDLDPATPRPSGTRADAPPRTDVALRPVAADDADFLWTWIHGAEDPEWKSWDAPYFHAA
+DTAAPPSRADFDADHARRRVGDPDVRVVTVDGTPVGLVTRTEQHPAGAGWWELGILLFDP
+TTWGRGVGRAALTLWSDASFAETDAHLLSLVTWSGNARMIASAVRVGYTEVARIPEARSW
+EGRRWDSVQLAVLRRDWWPASTDG------------------------------------
+------------------------------------------------------------
+------------------------------------------------------
+>TT9_LFPAFLNI_01968
+MTDLDPATPRPSGTRADAPPRTDVALRPVAADDADFLWTWIHGAEDPEWKSWDAPYFHAA
+DTAAPPSRADFDADHARRRVGDPDVRVVTVDGTPVGLVTRTEQHPAGAGWWELGILLFDP
+TTWGRGVGRAALTLWSDASFAETDAHLLSLVTWSGNARMIASAVRVGYTEVARIPEARSW
+EGRRWDSVQLAVLRRDWWPASTDG------------------------------------
+------------------------------------------------------------
+------------------------------------------------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000545.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000545.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2e6287f6d091bff1d30534cda96cdf177885e15a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000545.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00792
+MLEASIPNPYTPAPLPAPADRGAQDPEETMSRDQIEALQFERLRWSLHHAYENVPAYTEH
+FDAHGVHPSDFKALEDLAKFPYTDKEFLRKNYPFGAFAAQGPELRRIHASSGTTGQPTVV
+GYTDDDLATWATLVARCFRAGGIRPGDRVHNAYGYGLFTGGLGAHYGAERIGAAVIPMSG
+GQTEKQVQLITDFQPRAILSTPTYLLTIADGFKKLGLDPRESSLEVAILGAEPWTDEMRR
+EIEQTFDLDALDIYGLSEVMGPGVAGESAATKDGSHIWEDHFRPEIIDPLTDEVLETGRH
+GELVFTSLTKQALPIIRYRTHDLTRLLPGTTHPGHRRMGRITGRSDDMIILRGVNLFPSQ
+IEELALKEPALSPHFTLEITRPDRMDQMAVNIERRDHATLEEAQACAAHLRMEIKTKIGS
+SCVINVVEPETLARSSGKLKRIYDLRDKG
+>KBS0714_MOLHKGIG_02027
+MLEASIPNPYTPAPLPAPADRGAPDPEETMSRDQIEALQFERLRWTLHHAYENVPAYREH
+FDAHGVHPSDFTELGDLAKFPYTDKEFLRKSYPFGAFAATGPELRRIHASSGTTGQPTVV
+GYTDDDLATWATLVARCFRAGGIRPGDRVHNAYGYGLFTGGLGAHYGAERIGAAVIPMSG
+GQTEKQVQLITDFQPRAILSTPTYLLTIADGFKKLGLDPRESSLEVAILGAEPWTEEMRR
+EIEQTFDLDALDIYGLSEVMGPGVAGESAATKDGSHIWEDHFRPEIIDPLTDEVLETGRH
+GELVFTSLTKQALPIIRYRTHDLTRLLPGTTHPGHRRMGRITGRSDDMIILRGVNLFPSQ
+IEELALKEPALSPHFTLEITRPDRMDQMAVNIERRDHATLEEAQACAAHLRMEIKTKIGS
+SCVINVVEPETLARSSGKLKRIYDLRDQA
+>KD337_NAFOICDF_00753
+MLEASIPNPYSPAPVPAPADRGAPDPEETMSRDQIEALQFERLRWTLHHAYENVPAYKEH
+FDNHGVHPSDFTALEDLELFPYTDKEFLRKSYPFGAFAATGPELRRIHASSGTTGQPTVV
+GYTDDDLATWATLVARCFRAGGIRPGDRVHNAYGYGLFTGGLGAHYGAERIGAAVIPMSG
+GQTEKQVQLITDFQPRAILSTPTYLLTIADGFRKLGLDPRESSLEVAILGAEPWTEAMRR
+EIEQTFDLDALDIYGLSEVMGPGVAGESAATKDGSHIWEDHFRPEIIDPLTDEVLETGRP
+GELVFTSLTKQALPIIRYRTHDLTRLLPGTTHPGHRRMGRITGRSDDMIILRGVNLFPSQ
+IEELALKEPALSPHFTLEITRPDRMDQMAVNIERREHATLEEAQACAAHLRMEIKTKIGS
+SCVINVVEPETLARSSGKLKRIYDLRDQA
+>SA211_MHAAABBN_01736
+MLEASIPNPYTPAPLPAPADRGAPDPEETMSRDQIEALQFERLRWTLHHAYENVPAYREH
+FDAHGVHPSDFTELGDLAKFPYTDKEFLRKSYPFGAFAATGPELRRIHASSGTTGQPTVV
+GYTDDDLATWATLVARCFRAGGIRPGDRVHNAYGYGLFTGGLGAHYGAERIGAAVIPMSG
+GQTEKQVQLITDFQPRAILSTPTYLLTIADGFKKLGLDPRESSLEVAILGAEPWTEEMRR
+EIEQTFDLDALDIYGLSEVMGPGVAGESAATKDGSHIWEDHFRPEIIDPLTDEVLETGRH
+GELVFTSLTKQALPIIRYRTHDLTRLLPGTTHPGHRRMGRITGRSDDMIILRGVNLFPSQ
+IEELALKEPALSPHFTLEITRPDRMDQMAVNIERRDHASLEEAQACAAHLRMEIKTKIGS
+SCVINVVEPESLARSSGKLKRIYDLRDQA
+>TT9_LFPAFLNI_01964
+MLEASIPNPYTPAPLPAPADRGAPDPEETMSRDQIEALQFERLRWTLHHAYENVPAYREH
+FDAHGVHPSDFTELGDLAKFPYTDKEFLRKSYPFGAFAATGPELRRIHASSGTTGQPTVV
+GYTDDDLATWATLVARCFRAGGIRPGDRVHNAYGYGLFTGGLGAHYGAERIGAAVIPMSG
+GQTEKQVQLITDFQPRAILSTPTYLLTIADGFKKLGLDPRESSLEVAILGAEPWTEEMRR
+EIEQTFDLDALDIYGLSEVMGPGVAGESAATKDGSHIWEDHFRPEIIDPLTDEVLETGRP
+GELVFTSLTKQALPIIRYRTHDLTRLLPGTTHPGHRRMGRITGRSDDMIILRGVNLFPSQ
+IEELALKEPALSPHFTLEITRPDRMDQMAVNIERRDHATLEEAQACAAHLRMEIKTKIGS
+SCVINVVEPESLARSSGKLKRIYDLRDQA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000547.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000547.fa
new file mode 100644
index 0000000000000000000000000000000000000000..34682f88bb3f533708bad40e8b918aef620e766f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000547.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00794
+MT------PSRLPLLGVLAVGALALAGCA-GGGAEPSSPAPSPASSSASPTTTAASSAST
+SPAASASASSTPTA--------------TALSLDLPEELSGESATRLRAVVQDAAGPAAE
+LGQTFSSPLERRAALEEDAAIV-DALEE--DAG------DDAGRRACVDATRAAREADQA
+SGAAQAAWYAQPQTASTTGG---STDGTAASGRPGLQVEPLGVQVAVYPDEATARSVAEA
+ARDAAEACEGQEMSS-MGVSSVEPLTGAPGETAFTVVPVSGSIIYAVSTVVQVGDRVYAV
+SQGEDGAGVPEGAEERAVALVEDLEAALEG--
+>KBS0714_MOLHKGIG_02025
+MT------TSRLPLLGALAVGALALAGCA-GGGAEPSSPAP----SSASSTTTAASSA--
+SPAASSSTAPTSPAASASTASMGGASASGSLSLEMPPALDGQRTLAVQAAVQRAAGPGSE
+VGLSAASPLERQTELRQRAA----GLEQTVDAGASPASTRSAEQQACLDATRSDLERDAE
+AGAADLGLTAQPETAATTGGGPTSTPVPSFTASPDAEVTPLGVRVTVYPTEEAARAALED
+ARAAAQACTGVDLAG-LGVESVTR-TEHEGGTAYTALPAPGGSVYSHLTAVQDGARTVAV
+AQADADGGVPADAEDRAASIVADVLAALDGEG
+>KD337_NAFOICDF_00756
+MTHMTAVPSRRLRAGFALGAAALVLTGCAGGGGSASSSTA------AGSPTAGGAGSSVT
+SPAASSSAAS-----------------SSALSLSMPDRFGNEARTGLTEAVTAAAPEGFE
+VTTRSVSPLERKTDLEDQATILTDGPLEPAAEGSSASPTYTEAQQRCADAAAERFRTEAA
+AGGAQLRSDAMPTVA---GGGYTSVRA----------------DVVAYPDVSAAVAALAD
+GSAPIELCTDVQVPGAEQPTDIAPVTGIGDEA------VGGELAGGRWLAVRRGTDVVSV
+MVAGPGETAPAGAADQARALAEQVLEAVPA-G
+>SA211_MHAAABBN_01734
+MT------TSRLPLLGALAVGALALAGCAGGGGAEPSSPAP----SSASSTTTAASSAPT
+SPAASSSTESTGAA-----ESTAGASASGSLSLEMPPALDGQRTLAVQAAVQRAAGPGSE
+VGLSAASPLERQTELRQRAA----GLEQAVDAGASPASTRSAEQQACLDATRSDLERDAE
+AGAADLGLTAQPETAATTGGGPTTTPAPSFTASPDAEVTPLGVRVTVYPTEEAARAALED
+ARAAAQACTGVDLAG-LDVESVTR-TEHEGGTAYTALPAPGGSVYSHLTAVQDGARTVAV
+AQADADGGVPADAEDRAASIVADVLAALDGEG
+>TT9_LFPAFLNI_01962
+MT------TPRLPLLGALAVGALALAGCAGGGGAEPSSPAP----SSASSTTTAASSAST
+SPAASSSTAPTSPAASASTESTAGASASSSLSLEMPPALDGQRTLAVQTAVQRAAGPGSE
+VGLSAASPLERQTELRQRAA----GLEQAVDAGASPAPTRSAEQQACLDATRSALERDAE
+AGAADLGLTAQPETAATTGVGPTTTPAPSFTASPDAEVTPLGVRVTVYPTEEAARAALED
+ARAAAQACTGVDLAG-LGVESVTR-TEHEGGAAYTALPAPGGSVYSHLTAVQDGARTVAV
+AQADADGGVPADAEDRAASIVTDVLAALDGEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000548.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000548.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5e67db7f0085af50057f015a40f59e36b6338543
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000548.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00795
+MSEFTRFEQVAVLGTGVLGSQIIMQAAYHGKKVMAYDAVPAALEGIERRWAWIRQGYEAD
+LGEGYDPQRFDEAIARITPTSDLGEALADADIVIEAVPENLELKRKVWAQVGELAPATTL
+FATNTSSLLPSDFADASGHPERFLALHYANRIWAQNTAEVMGTAATSPEAVAGALQFAEE
+TGMVPVHVRKEIPGYFLNSLLIPWLQAGSKLYMHGVGNPADIDRTWRVATGNERGPFQTY
+DVVGFHVAANVSRNTGVDWQRGFA-ELLEKSIAEGHSGVADGQGFYRYGPDGENLGPVED
+WNLGDKDTPLG
+>KBS0714_MOLHKGIG_02024
+MSEFTRFDQVTVLGTGVLGSQIIMQAAYHGKRVMAYDAVPAALEGIERRWAWIRQGYEAD
+LGEGYDPQRFDEAIARITPTSDLGEALADADIVVEAVPENLELKRKVWAQVGELAPATTL
+FATNTSSLLPSDFADASGHPERFLALHYANRIWAQNTAEVMGTAATSPEAVAGALQFAEE
+TGMVPVHVRKEIPGYFLNSLLIPWLQAGSKLYMHGVGNPADIDRTWRVATGNERGPFQTY
+DIVGFHVAANVSRNAGADWQRGFA-ELLEKSIAEGHSGVADGQGFYRYGPDGENLGPVED
+WNLGDKDTPLG
+>KD337_NAFOICDF_02090
+---MTTIQKVTVFGTGVLGSQIIMQAAYHGKDVTAYDVDDKALAQLPARWEWMRGYYQRD
+LPD-FDAERFDKAVSSIRTTTDVADAVTDADVVIESIPENLELKKSVWAKIGEAVPERTV
+LLTNTSSLLPSSFADSTGHPERFLALHFANLVWKNNTGEVMATAKTAPEHFDAVLAFAGE
+IGLVPVPVRKEVPGYVLNSLLIPWLDAGAKLYQGGVSDPEDIDNVWKIATGAPKGPFEVY
+DVVGFNVAYNISRVSADPLKKAFAEETLKKGIDAGTTGLGVGEGFYRYDKDGNNLGAVES
+WKQENR----G
+>SA211_MHAAABBN_01733
+MSEFTRFDQVTVLGTGVLGSQIIMQAAYHGKKVMAYDAVPAALEGIERRWAWIRQGYEAD
+LGEGYDPQRFDEAIARITPTSDLGEALADADIVIEAVPENLELKRKVWAQVGELAPATTL
+FATNTSSLLPSDFADASGHPERFLALHYANRIWAQNTAEVMGTAATSPEAVAGALQFAEE
+TGMVPVHVRKEIPGYFLNSLLIPWLQAGSKLYMHGVGNPADIDRTWRVATGNERGPFQTY
+DIVGFHVAANVSRNTGVDWQLGFA-ELLEKSIAEGHSGVADGQGFYRYGPDGENLGPVED
+WNLGDKDTPLG
+>TT9_LFPAFLNI_01961
+MSEFTRFEQVAVLGTGVLGSQIIMQAAYHGKKVMAYDAVPAALEGIERRWAWIRQGYEAD
+LGEGYDPQRFDEAIARITPTSDLGEALADADIVIEAVPENLELKRKVWAQVGELAPATTL
+FATNTSSLLPSDFADASGHPERFLALHYANRIWAQNTAEVMGTAATSPEAVAGALQFAEE
+TGMVPVHVRKEIPGYFLNSLLIPWLQAGSKLYMHGVGNPADIDRTWRVATGNERGPFQTY
+DIVGFHVAANVSRNTGVDWQLGFA-ELLEKSIAEGHSGVADGQGFYRYGPDGENLGPVED
+WNLGDKDTPLG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000549.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000549.fa
new file mode 100644
index 0000000000000000000000000000000000000000..90d15fe2628aec70319150fe8db0146833c44b4a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000549.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00796
+MTVTLPSLPEILPSYVNGAWWTPQSPSKVTDVTDANTGERLTGVSTDGLDTAAAIEHARTVGRKSLGELTIHERALKLKE
+LALYLNSRIQELYDVSFATGATQRDHAFDVDGGIGTLFTFSGKGRRELPNSNVITDGPVEPLSRDGSFIGEHIYQRIPGV
+AVQINAFNFPVWGMLEKFAPSFVAGVPTVVKPATPTGYVTQKCVELMLESGVLPEGSLQLISGSARDLLDHLDYRDHVSF
+TGSAATAQTLRKHPNVQEGGVRFTAETDSLNAAILGPDADPESPEFEAFVKVVFQEMTVKAGQKCTAIRRVIVPQDRVDA
+VVEALSARL-GKVVLGDPRVEGTTMGALASKEQQGEVRGAVQRLVDAGGQVRLGGPDASTGDADAESGAFFAPTVLSFED
+ARTPEVHAVEAFGPVTSVVGYTDVEDAVALAALGSGSLVATVATDDGETARAFAAGIGAHHGRVHFLNRQTATTTTGHGA
+PVPVLVHGGPGRAGGGEELGGVRAVKHYMQRTAIQGSPDMLTAITGVWHQGAAAHTVTREDVEAGTAVHPFYKSLAELTV
+GDQFASGLRTVTLQDITDFAEETGDKFYAHTDEEAAMANPFFPRRVAHGYLLVSWAAGLFVAPDPGPVLANYGLENLRFI
+TPVTYDDAIRVTLTAKRITPRVSDEYGEVAWDCRIHNQKDELCAQYDVLTLVAKTWPMAPSETSQG
+>KBS0714_MOLHKGIG_02023
+MTVTAPSLPEILPSYVAGSWWTPSHPSKVTDVTDANTGARLTGVSTDGLDTAAAIEHARTVGQQALGALTIHERALKLKE
+LALYLNSRVQELYDVSFATGATQRDHAFDVDGGIGTLFTFSGKGRRELPNSNVIIDGDVEPLSRDGSFIGEHIYQRIPGV
+AVQINAFNFPVWGMLEKFAPAFVAGVPTVVKPATPTGYVAQKCVELMLESGVLPEGSIQLISGSARDLLDHLDYRDHVAF
+TGSAATAATLKKHPNVQEGGVRFTAETDSLNAAILGPDADPESPEFEAFVKVVFQEMTVKAGQKCTAIRRVIVPQDRVEA
+VTAALTERLAAKVVLGDPRVEGTTMGALASKEQQGEVRGAVQRLVDAGGQVRLGGPEGSTGDADAESGAFFAPTVLTFED
+ARTPEVHSVEAFGPVTSVIGYTDVADAVALAALGSGSLVATVATNDGETARAFAAGIGAHHGRVHVLNRQTATTTTGHGA
+PVPVLIHGGPGRAGGGEELGGVRAVKHYMQRTAIQGSPDMLTAITGVWHQGAAAHTVTREDVEAGTAVHPFYKSLAELTV
+GDQFASGLRTVTLEDITAFAEETGDRFYAHTDEEAAMANPFFPRRVAHGYLLVSWAAGLFVAPDPGPVLANYGLENLRFI
+TPVTYDDAIRVTLTAKRITPRVSDEYGEVAWDCRIHNQKDELCAQYDVLTLVAKTWPMAPSETSQG
+>KD337_NAFOICDF_00757
+MTVTAPSLPEILPSYVAGSWWTPSHPSKVTDVTDANTGELMARVSTDGIDTAGAIEHARTVGQRNLGELTIHERALKLKE
+LALYLNSRIQELYDLSFATGSTQRDHAFDVDGGIGTLFTFSGKGRRELPNSNVIIDGDVEPLSRDGSFIGEHIYQRIPGV
+AVQINAFNFPVWGMLEKFAPAFVAGVPTVVKPATPTGYVTEACVRMMVESGVLPEGSIQLISGSARDLLDHLDYRDHVAF
+TGSAGTAQTLRQHENVLNGGVRFTAETDSLNAAILGPDAGVDTPEFEAFVKVVFQEMTVKAGQKCTAIRRVIVPEAMVED
+VTAALTERLSSTVVLGDPRAEGTTMGALASKEQQSEVRKAVQTLVDAGGQVRLGGPEGSTGDADAEAGAFFAPTVLTFAD
+ADTPQVHSVEAFGPVTSVIGYTDVADAVRLAALGSGSLVATLATNDGATASEFIAGIGAHHGRVHVLNRQTAKTTTGHGA
+PVPVLIHGGPGRAGGGEELGGVRAVKHYMQRTAVQGSPDMLTAITGVWHQGAAAQTATREDVEAGKAKHPFYKALDELQI
+GDQFASGLRTVTIEDITAFAESTGDKFYAHTDEEAAMANPFFPRRVAHGYLLVSWAAGLFVAPDPGPVLANYGLDDLRFI
+TPVTYDDAIRVTLTAKRITPRVTDEYGEVAWDCRLHNQKDELVAQYDVLTLVAKTWPMPEAE-PKA
+>SA211_MHAAABBN_01732
+MTVTAPSLPEILPSYVAGSWWTPSHPSKVTDVTDANTGARLTGVSTDGLDTAAAIEHARTVGQQALGELTIHERALKLKE
+LALFLNSRVQELYDVSFATGATQRDHAFDVDGGIGTLFTFSGKGRRELPNSTVIIDGDVEPLSRDGSFIGEHIYQRIPGV
+AVQINAFNFPVWGMLEKFAPAFVAGVPTVVKPATPTGYVTQKCVELMLESGVLPEGSIQLISGSARDLLDHLDYRDHVAF
+TGSAATAATLKKHPNVQEGGVRFTAETDSLNAAILGPDADPESPEFEAFVKVVFQEMTVKAGQKCTAIRRVIVPQDRVEA
+VTAALTERLAAKVVLGDPRVEGTTMGALASKDQQGEVRGAVQRLVDAGGQVRLGGPEGSTGDADAESGAFFAPTVLTFED
+ARTPEVHSVEAFGPVTSVIGYTDVADAVALAALGSGSLVATVATNDGETARAFAAGIGAHHGRVHVLNRQTAATTTGHGA
+PVPVLIHGGPGRAGGGEELGGVRAVKHYMQRTAIQGSPDMLTAITGVWHQGAAAHTVTREDVEAGTAVHPFYKSLAELTV
+GDQFASGLRTITLEDITAFAEETGDRFYAHTDEEAAMANPFFPRRVAHGYLLVSWAAGLFVAPDPGPVLANYGLENLRFI
+TPVTYDDAIRVTLTAKRITPRVSDEYGEVAWDCRIHNQKDELCAQYDVLTLVAKTWPMAPSETSQG
+>TT9_LFPAFLNI_01960
+MTVTAPSLPEILPSYVAGSWWTPSHPSKVTDVTDANTGARLTGVSTDGLDTAAAIEHARTVGQQALGALTIHERALKLKE
+LALYLNSRVQELYDVSFATGATQRDHAFDVDGGIGTLFTFSGKGRRELPNSTVIIDGDVEPLSRDGSFIGEHIYQRIPGV
+AVQINAFNFPVWGMLEKFAPAFVAGVPTVVKPATPTGYVTQKCVELMLESGVLPEGSIQLISGSARDLLDHLDYRDHVAF
+TGSAATAATLKKHPNVQEGGVRFTAETDSLNAAILGPDADPESPEFEAFVKVVFQEMTVKAGQKCTAIRRVIVPQDRVEA
+VTAALTERLAAKVVLGDPRVEGTTMGALASKEQQSEVRGAVQRLVDAGGQVRLGGPEGSTGDADAESGAFFAPTVLTFED
+ARTPEVHSVEAFGPVTSVIGYTDVADAVALAALGSGSLVATVATNDGETARAFTAGIGAHHGRVHVLNRQTATTTTGHGA
+PVPVLVHGGPGRAGGGEELGGVRAVKHYMQRTAIQGSPDMLTAITGVWHQGAAAHTVTREDVEAGTAVHPFYKSLAELTV
+GDQFASGLRTVTLEDITAFAEETGDRFYAHTDEEAAMANPFFPRRVAHGYLLVSWAAGLFVAPDPGPVLANYGLENLRFI
+TPVTYDDAIRVTLTAKRITPRVSDEYGEVAWDCRIHNQKDELCAQYDVLTLVAKTWPMAPSETSQG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000552.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000552.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ed3363a2cd8ca0afd446abddece1132c1e7879c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000552.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00802
+MPASARRPFRFTHRWAVPRPAAEVAALLADPLGYPTWWPSVPRARRIDGAGHDGDPRVAV
+LLRGLVPVRLVMARELDDRERGRLVARLDGDLRGTVRVTVHDDDGPAGGTGGCTVAWEQE
+VVLGAGRLRAAARLPGARAAMRLSHAWAMRSARRALGARALPAGR-------
+>KBS0714_MOLHKGIG_02020
+--MSVDRPFRFTHRWAVPADARSVLALLADPAGYPRWWPAVPRVRRL------GPDRAAV
+RLRGFVPVRLTMERLIDDRARGLLVARLSGGLTGTVRATVHDDGAPAGHAPRCIVVWEQE
+VVLTSPWMRAVARVPGARTAMGLSHAAAMRSARRALGAKAVPTADPA-----
+>KD337_NAFOICDF_00760
+--MSVDRPFRFTHRWSVPADARSVLALLADPAGYPRWWPAVPRVRHL------GPDRAAV
+RLRGFVPVRLTMERLIDDRARGLLVAHLSGDLTGTVRVTVHDDGAPAGHAPRCIVVWEQE
+VVLTAPWMRAVDRVPGARTAMGLSHAAAMRSARRALGAKAMPTADPAPTTRP
+>SA211_MHAAABBN_01729
+--MSADRPFRFTHRWAVPADARSVLALLADPAGYPRWWPAVPRVRRL------GPDRAAV
+RLRGFVPVRLTMERLIDDRARGLLVARLSGGLTGTVRVTVHDDGAPAGHAPRCIVAWEQE
+VVLTSPWMRAVAHVPGARTAMGLSHAAAMRSARRALGAKAVPTADPARTSRP
+>TT9_LFPAFLNI_01957
+--MSVDRPFRFTHRWAVPADARSVLALLADPAGYPRWWPAVPRAHRL------GPDRAAV
+RLRGLVPVRLTMERLIDDRARGLLVAHLSGDLTGTVRVTVHDDGAPAGHAPHCVVTWEQE
+VVLTSPWMRAVARVPGARTAMGLSHAAAMRSARRALGAKAVPTADPARTTRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000553.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000553.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f81839cab9f1fc3c5aa804c0135a6beb7695f369
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000553.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00804
+MTDFSHFTALRVEEREDRVHARMDRPGVRNAIDQTMVDEFHELCAHLEREPKILIISGTQ
+VESKREPGTFSGIFASGADIGQLRERRRDDALRGVNSQVFDRIHRLPMPVIAAIDGFALG
+GGAELAYAADFRIATPALKMGQPETSLGITAAAGAQWRLKELVGEPVALELLLAGRILDA
+QEALELKLVTELHEPEALEVAAHALADRIAKQDPLAVRISKRVFHLPREAHPHVDEIAQA
+ILFESEAKFDRMQAFLDRKKK
+>KBS0714_MOLHKGIG_02017
+MTDFSHFSALHVEEREDRVHARMDRPGVRNAIDQTMVDEFHELCAHLEREPKILIISGTQ
+VESTREPGTFSGIFASGADIGQLRERRRDDALRGVNSQVFDRIHRLPMPVIAAIDGFALG
+GGAELAYAADFRIATPALKMGQPETSLGITAAAGAQWRLKELVGEPVALELLLAGRILDA
+QEALELKLVTELHEPDALLDAADALADRIAQQDPLAVRLSKRVFHLPRGAHPHVDEIAQA
+ILFESDAKFERMQAFLDRKKK
+>KD337_NAFOICDF_00763
+MADFSHFTALRVEEREDRVHARMDRPGVRNAIDQTMVDEFHELCAHLEREPKILIISGTQ
+VESKREPGRFSGIFASGADIGQLRERRRDDALRGVNSQVFDRIHRLPMPVIAAIDGFALG
+GGAELAYAADFRIATPALKMGQPETGLGITAAAGAQWRLKELVGEPVALELLLAGRILDA
+QEALELKLVTELHEPDALLDAADALADRIAQQDPLAVRISKRVFHLPREAHPHVDEIAQA
+ILFESQAKFERMQAFLDRKKK
+>SA211_MHAAABBN_01726
+MDDFSHFTALRVEEREDRVHARMDRPGVRNAIDQTMVDEFHELCAHLEREPKILIISGTQ
+VESKCEPGTFSGIFASGADIGQLRERRRDDALRGVNSQVFDRIHRLPMPVIAAIDGFALG
+GGAELAYAADFRIATPALKMGQPETSLGITAAAGAQWRLKELVGEPVALELLLAGRILDA
+QEALELKLVTELHEPEALLDAADALADRIAQQDPLAVRLSKRVFHLPREAHPHVDEIAQA
+ILFESEAKFERMQAFLDRKKK
+>TT9_LFPAFLNI_01954
+MTDFSHFTALRVEEREDRVHARMDRPGVRNAIDQTMVDEFHELCAHLEREPKILIISGTQ
+VESTREPGTFSGIFASGADIGQLRERRRDDALRGVNSQVFDRIHRLPMPVIAAIDGFALG
+GGAELAYAADFRIATPALKMGQPETSLGITAAAGAQWRLKELVGEPVALELLLAGRILDA
+QEALELKLVTELHEPDALLDAADALADRIAQQDPLAVRLSKRVFHLPREAHPHVDEIAQA
+ILFESEAKFERMQAFLDRKKK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000554.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000554.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cbb198c032579fbe5a14d6e7ed42ff325a790b15
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000554.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00805
+MTTPSPQPQALLVGGKRTAVGRYGGALSAVRPDDLAALTIKQVIEDAGIDPAAVDEVILG
+NANGAGEENRNVARMAWLLAGFPDTVPGITVNRLCASGMSAIGIATAMVRSGMADVVVAG
+GVESMSRAPWVMEKPTTAFAKPGAAFDTSIGWRFVNPRFADGEFGEKFTFSMPETAEEVG
+EVDGITREDADAFAARSHGRAIAAIEAGRFKDEIVPVTVKGRKGAETVVDTDEGPRPGST
+PEVLAGLRPIIKKDGVVTAGNSSSLNDGASAILVVSERAAQKYGLTPRARVVESTSAGLA
+PEIMGLGPVPATEKALERSGWSVADLGAVELNEAFATQSLASMRRLGLDPEIVNADGGAI
+ALGHPLGSSGSRLVVTLLGRMEREGADRGLATMCVGVGQGSAMLVEKV
+>KBS0714_MOLHKGIG_02016
+M---SAQSQALLVGGRRTPVGKYGGALSSVRPDDLAALTVKAVIEDAGIDPSVVDDVILG
+NANGAGEENRNVARMAWLLAGFPDTVPGITVNRLCASGMSAIGIATAMVRSGMADVVVAG
+GVESMSRAPWVMEKPTTAFAKPGAAFDTAIGWRFVNPRFADGEFGEKFTFSMPETAEEVG
+EVDGITREDADAFAARSHERALAAIEAGRFADEIVPVVVTGRKGAETVVDTDEGPRPGST
+PEVLASLRPIIKKDGVVTAGNSSSLNDGASAILVVSERAAQKYGLTPRARVVESTSAGLA
+PEIMGLGPVPATEKALERSGWSVADLGAVELNEAFATQSLASMRRLGLDPETVNADGGAI
+ALGHPLGSSGSRLVVTLLGRMEREGADRGLATMCVGVGQGSAMLVERV
+>KD337_NAFOICDF_00764
+M---SAQSQALLVGGRRTPVGKYGGALSSVRPDDLAALTVKAVIEDAGIDPSVVDDVILG
+NANGAGEENRNVARMAWLLAGFPDTVPGITVNRLCASGMSAIGIATAMVRSGMADVVVAG
+GVESMSRAPWVMEKPTTAFAKPGAAFDTSIGWRFVNPRFADGEFGEKFTFSMPETAEEVG
+EVDGITREDADAFAARSHERALAAIEAGRFADEIVPVVVTGRKGAETIVDTDEGPRPGST
+PEVLAGLRPIIKKDGVVTAGNSSSLNDGASAILVVSERAAQKYGLTPRARVVESTSAGLA
+PEIMGLGPVPATEKALERSGWSVADLGAVELNEAFATQSLASMRRLGLDPETVNADGGAI
+ALGHPLGSSGSRLVVTLLGRMEREGADKGLATMCVGVGQGSAMLVEKV
+>SA211_MHAAABBN_01725
+M---SAQSQALLVGGRRTPVGKYGGALSSVRPDDLAALTIKAVIEDAGIDPSVVDEVILG
+NANGAGEENRNVARMAWLLAGFPDTVPGITVNRLCASGMSAIGIATAMVRSGMADVVVAG
+GVESMSRAPWVMEKPTTAFAKPGAAFDTAIGWRFVNPRFADGEFGEKFTFSMPETAEEVG
+EVDGITREDADAFAARSHERALAAIEAGRFADEIVPVVVTGRKGAETVVDTDEGPRPGST
+PEVLASLRPIIKKDGVVTAGNSSSLNDGASAILVVSERAAQKYGLTPRARVVESTSAGLA
+PEIMGLGPVPATEKALERSGWSVADLGAVELNEAFATQSLASMRRLGLDPETVNADGGAI
+ALGHPLGSSGSRLVVTLLGRMEREGADRGLATMCVGVGQGSAMLVEKV
+>TT9_LFPAFLNI_01953
+M---SAQSQALLVGGRRTPVGKYGGALSSVRPDDLAALTIKAVIEDAGIDPSVVDEVILG
+NANGAGEENRNVARMAWLLAGFPDTVPGITVNRLCASGMSAIGIATAMVRSGMADVVVAG
+GVESMSRAPWVMEKPTTAFAKPGAAFDTAIGWRFVNPRFADGEFGEKFTFSMPETAEEVG
+EVDGITREDADAFAARSHARALAAIEAGRFADEIVPVVVTGRKGAETIVDTDEGPRPGST
+PEVLAGLRPIIKKDGVVTAGNSSSLNDGASAILVVSERAAQKYGLTPRARVVESTSAGLA
+PEIMGLGPVPATEKALERSGWSVADLGAVELNEAFATQSLASMRRLGLDPETVNADGGAI
+ALGHPLGSSGSRLVVTLLGRMEREGADRGLATMCVGVGQGSAMLVERV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000556.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000556.fa
new file mode 100644
index 0000000000000000000000000000000000000000..250f18f32f4f08c2b9fd2647220810d48a821b11
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000556.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00830
+MTETTVTPATGKRRATFNTLEVSELRRLTDDSVEVTFAVPEELADDYDYVPGQYVALRKE
+LDGQEVRRSYSICAIPKRGEIRVAVKKDIGGKFSTWANEVLEVGEKIDVMNPQGAFTSRS
+HVTSLNDAEKVAAEKVAQNKNTHLVAFAAGSGITPIMAIAKAVLAASETSRFDLVYANRS
+AMDVMFAEEIGDLKDKYPARFTVHHVLSREQRVSPLLSGRIDAEKLTTLLDRVIDVDGTD
+EWFLCGPFELVQLARETLSARGVDEDDVRFELFTTGRPENPQGHSGRVVEADPSGDNVTI
+EFNLDGLSGKVESPKSAHETILNAALRVRSDVPFACAGGVCGTCRAKVTDGEYEMDENYA
+LEKDEVEAGYVLTCQTRATSDSITVDYDA
+>KBS0714_MOLHKGIG_02012
+MTETTDAPTTGKRRATFNTLEVSELRRLTEDSVEVTFAVPEELADDYDYVPGQYVALRKE
+LDGAEVRRSYSICAVPKRGEIRVAVKKDIGGTFSTWANESLEVGEKIDVMNPQGAFTSRT
+HVTSLNDAQKVAAEKVAEKKDTHLVAFAAGSGITPIMAIAKAVLAASETSRFDLVYANRS
+AMDVMFAEEIGDLKDKYPARFTVHHVLSREQRVSPLLSGRIDEDKLTTLLDRVIDVEGTD
+EWFLCGPFELVQLTRETLAARGVPEDDVRFELFTTGRPENPQGHSGRVVEVDPKGDNVTI
+EFNLDGLTAKVESPKSAHETVLNAALRVRSDVPFACAGGVCGTCRAKVVDGAYEMDENYA
+LEKDEVEKGYVLTCQTRPTSDSITLDFDA
+>KD337_NAFOICDF_00767
+MTETTDAPITGKRRATFNTLEVSGLRKLTDDSVEVTFAVPEELADDYDYVPGQYVALRKE
+LDGAELRRSYSICAVPQRGEIRVAVKKDLGGTFSTWANEVLEVGEKIDVMNPQGAFTSRT
+NVTSMNDPEAVAAEAVKQDQ-THLVALAAGSGITPIMAIAKSVLAASDSARFDLIYANRS
+AMDVMFAEEIGDLKDKYPARFTVNHVLSREQRVAPLLSGRIDDEKLNTLLDRVIDVENTD
+EWFLCGPFELVQLARDTLSERGVAEDDVRFELFTTGKPEAPQGQSGRGVEADPSGDNVTI
+EFNLDGLSAKVESPKSAHETILNAALRVRSDVPFACAGGVCGTCRAKVTEGEFTMEENYA
+LEKDEVEQGYVLTCQTRPTTDSIKVDFDA
+>SA211_MHAAABBN_01722
+MTETTDVPTTGKRRATFNTLEVSELRRLTDDSVEITFAVPEELADDYDYVPGQYVALRKE
+LDGAEVRRSYSICAVPKRGEIRVAVKKDIGGKFSTWANESLEVGEKIDVMNPQGAFTSRT
+HVTSLNDAQKVAAEKVAEKKDTHLVAFAAGSGITPIMAIAKAVLAASETSRFDLVYANRS
+AMDVMFAEEIGDLKDKYPARFTVHHVLSREQRVSPLLSGRIDEDKLTTLLDRVIDVEGTD
+EWFLCGPFELVQLTRETLAARGVSEDDVRFELFTTGRPENPQGHSGRVVEVDPKGDNVTI
+EFNLDGLTAKVESPKSAHETVLNAALRVRSDVPFACAGGVCGTCRAKVVDGAYEMDENYA
+LEKDEVEKGYVLTCQTRPTSDSITLDFDA
+>TT9_LFPAFLNI_01950
+MTETTAAPTTGKRRATFNTLEVSELRRLTDDSVEVTFAVPEELADDYDYVPGQYVALRKE
+LDGAEVRRSYSICAVPKRGEIRVAVKKDIGGKFSTWANESLEVGEKIDVMNPQGAFTSRT
+HVTSLNDAQKVAAEKVAENKDTHLVAFAAGSGITPIMAIAKAVLAASESSRFDLVYANRS
+AMDVMFAEEIGDLKDKYPARFTVHHVLSREQRVSPLLSGRIDEDKLTTLLDRVIDVEGTD
+EWFLCGPFELVQLTRETLAARGVSEDDVRFELFTTGRPENPQGHSGRVVEVDPKGDNVTI
+EFNLDGLTAKVESPKSAHETVLNAALRVRSDVPFACAGGVCGTCRAKVVDGAYEMDENYA
+LEKDEVEKGYVLTCQTRPTSDSITLDFDA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000557.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000557.fa
new file mode 100644
index 0000000000000000000000000000000000000000..37bf50f40a9d9425e5b6be40a5edc23979f1445c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000557.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00831
+MTTASELRPADPADARVWDAASTVHDPEIPVLSIADLGILREARAEGEKAVVVITPTYSG
+CPAMDTITTDVSRALERSGFEESEVRLVLQPAWTTDWMTDEGKAKLAEYGIAPPSARTTD
+GPVMIGMAVKCPRCHSLNTREITRFGSTSCKALYTCRECLEPFDYFKVH
+>KBS0714_MOLHKGIG_02011
+MTTASELRPADPAGARVWDAASTVHDPEIPVLSIADLGILREARVEGERAVVVITPTYSG
+CPAMDTITTDVARALGRAGFPDAEVRLVLQPAWTTDWMTDEGKAKLNEYGIAPPVARTTD
+GPVRIGMAVKCPRCHSLNTREITRFGSTSCKALYTCRECLEPFDYFKVH
+>KD337_NAFOICDF_00768
+MTTAAELRPSDPAAAQVWDAAATVHDPEIPVLSIADLGILRDVQVEDGRAVVVITPTYSG
+CPAMGTITADVTTALGRAGYPDAEVRTVLQPAWTTDWMTDEGKAKLAEYGIAPPSARTDE
+GPVRVGLAVKCPRCHSLNTREITRFGSTSCKALYTCQECLEPFDYFKVH
+>SA211_MHAAABBN_01721
+MTTASELRPADPADARVWDAASTVHDPEIPVLSIADLGILREARAEGERAVVVITPTYSG
+CPAMDTITTDVTRALERAGFPDAEVRLALQPAWTTDWMTDEGKAKLNEYGIAPPVARTTD
+GPVMIGMAVKCPRCHSLNTREITRFGSTSCKALYTCRECLEPFDYFKVH
+>TT9_LFPAFLNI_01949
+MTTASELRPADPADARVWDAASTVHDPEIPVLSIADLGILREARVEGERAVVVITPTYSG
+CPAMDTITTDVTRALERAGFPDAEVRLVLQPAWTTDWMTDEGKAKLNEYGIAPPVARATD
+GPIRIGMAVKCPRCHSLNTREITRFGSTSCKALYTCRECLEPFDYFKVH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000558.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000558.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a31ba5f71ab4d05e880d8f66267e1ee4204ec08
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000558.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00832
+MSFATNDSATKHSAGVAITAEEIASGEQKASEETARYALYLGDDALMLGQRLSWWISRTP
+ELEEDIALGNIALDLVGHARFLLSYAGTAWGQSEDELAYFRDEEEFRSVRLVEAENGDFA
+KTIARQLYYSFYAFELYTRLKESTDATLAAIADKALKEVLYHQDHAALWLNRLGLGTDES
+KFRMQRGLDELWPYLPELFHDDETTRPLAEQGIAVLPSSLEEPTMTRIREAIEAAGLEVP
+TTGTARGGDRSGAMSEYRGYILAEMQSLARRHPGASW
+>KBS0714_MOLHKGIG_02010
+MSFATNDSATRHSAGVAITAEEIAAGEQKANDDVARYALALGDDALMLGQRLSWWISRAP
+EIEEDIALGNIALDLVGHARFLLSYAGTAWGKTEDELAYFRDEEEFRSVRLVEAENGDFA
+KTIARQLYYSFYSYELYTRLRESTDPTLAAIADKALKEVLYHQDHAALWLQRLGLGTEES
+KRRMQRGLDELWPYVAELFHDDDVVRALAEQGVAVLPSSLEEPTMTRIRAAIEEACLTVP
+TTGTARGGDRSGAMSEYRGYILAEMQSLARRHPGATW
+>KD337_NAFOICDF_00769
+MSFATNDSATRHSAGVANTAEEIASGGQKASDEVARYAVYLGDDALMLGQRLSWWISRAP
+ELEEDIALGNIALDLVGHARFLLSYAGTAWDKSEDDLAYFRDEEEFRSTRLVEAENGDFG
+KTIARQLYYSVYAHGLYTRLKDSKDATLAAIADKALKEVEYHLDHAEQWVNRLGLGTEES
+NARLQRGLDELWPYLPELFHDDELTRSLAEQGIAVLPSSLEESTMARIRAAIEGADLKVP
+ETGAARGGDRSGQMSEYRGYILAEMQSLARRHPGASW
+>SA211_MHAAABBN_01720
+MSFATNDSATRHSAGVAITAEEIAAGEQKASDDVARYALALGDDALMLGQRLSWWISRAP
+ELEEDIALGNIALDLVGHARFLLSYAGTAWGKTEDELAYFRDEEEFRSVRLVEAENGDFA
+KTIARQLYYSFYSYELYTRLRESTDSTLAAIADKALKEVLYHQDHAALWLQRLGLGTEES
+KRRMQRGLDELWPYVAELFHDDDVVRALAEQGVAVLPSSLEEPTMTRIRAAIEEAGLTVP
+TTGTARGGDRSGAMSEYRGYILAEMQSLARRHPGATW
+>TT9_LFPAFLNI_01948
+MSFATNDSATRHSAGVAITAEEIAAGEQKASDDVARYALALGDDALMLGQRLSWWISRAP
+ELEEDIALGNIALDLVGHARFLLSYAGTAWGKTEDELAYFRDEEEFRSVRLVEAENGDFA
+KTIARQLYYSFYSYELYTRLRESADPTLAAIADKALKEVLYHQDHAALWLQRLGLGTEES
+KRRMQRGLDELWPYVAELFHDDDVVRALAEQGVAVLPSSLEEPTMTRIRAAIEEAGLTVP
+TTGTARGGDRSGAMSEYRGYILAEMQSLARRHPGATW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000559.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000559.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9af05611fef617e9aad081a92173f990d575b924
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000559.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00833
+MGENTAASNAWPLWEVFVRANRGLSHVHAGSLHAPDASLALRNARDLYTRRNEGTSVWVV
+PAEAIAASDPDSKGGFFESPQGKSYRHATYYQQSEGVPHL
+>KBS0714_MOLHKGIG_02009
+MSETTAASHAWPLWEVFVRANRGLSHVHAGSLHAPDATLALRNARDLYTRRNEGTSVWVV
+PAEAIAASDPDSKGGFFESAQGKSYRHATYYQQSEGVPHL
+>KD337_NAFOICDF_00770
+MTENTAPSNEWPLWEVFVRANRGLSHVHAGSLHAPDATMALRNARDLYTRRNEGTSVWVV
+PADAVAASDPDSKGGFFESPQGKSYRHATYYQKSEGVPHL
+>SA211_MHAAABBN_01719
+MSETTAASHAWPLWEVFVRANRGLSHVHAGSLHAPDATLALRNARDLYTRRNEGTSVWVV
+PAEAIAASDPDSKGGFFESAQGKSYRHATYYQQSEGVPHL
+>TT9_LFPAFLNI_01947
+MSETTAASHAWPLWEVFVRANRGLSHVHAGSLHAPDATLALRNARDLYTRRNEGTSVWVV
+PAEAIAASDPDSKGGFFESAQGKSYRHATYYQQSEGVPHL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000560.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000560.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7458e0963f6968a41f0c852be5267b72b889d081
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000560.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00834
+MTQTSSTTRLASVPSPEDAAGQENFDRLIAEDSRIEPRDWMPEAYRKSLTRQVSQHAHSE
+IIGMQPEANWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGTPRDVLNDQLLEGKA
+KYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRSSYGPYGRAMVRICKEESFHQRQG
+WEILYELSHGTPEQKQMAQDAVDRFYGPALQMFGPPDEDSPNSKQSMAWKVKRFSNDELR
+QRFVDMIVPQAEALGLTLPDPDLKWNEERGHYDFGELDWDELMSVIKGNGPMNTQRLARR
+IQAHEDGAWVRDAAAAYARRQAEQHAPAETHLIGA
+>KBS0714_MOLHKGIG_02008
+MTQTSSPQHLASVPSPEDAAGQENFDRLIAEDSRIEPRDWMPEAYRKSLTRQVSQHAHSE
+IIGMQPEANWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGTPRDELNEQLLSGRA
+KYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRICKEESFHQRQG
+WEILYELSHGTPEQKQMAQDAVNRFYGPALQMFGPTDEDSPNSRQSMAWKVKRFSNDDLR
+QRFVDMIVPQAEALGLTLPDPDLKWNEERGHYDFGELDWDEFMSVIKGDGPMNTQRMARR
+IQAHEDGAWVREAAAAYARRQAEQNAPAETHLIGA
+>KD337_NAFOICDF_00771
+MTQTSSSPHLASVPSPDDAAGQENFDRLIQEDSRIEPRDWMPEAYRKSLTRQVSQHAHSE
+IIGMQPEANWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGTPRDELNEQLLSGRA
+KYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRICKEESFHQRQG
+WEILYELSHGTPEQKQMAQDAVNRFYGPALQMFGPPDEDSPNSQQSMAWKVKRFSNDELR
+QRFVDMIVPQAEALGLTLPDPDLKWNEERGHYDFGELDWDEFMSVIKGNGPMNTQRLARR
+VQAHEDGAWVREAAAAYARRQAEQHVPADTQLIGA
+>SA211_MHAAABBN_01718
+MTQTSSPQHLASVPSPEDAAGQENFDRLIAEDSRIEPRDWMPEAYRKSLTRQVSQHAHSE
+IIGMQPEANWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGTPRDELNEQLLSGRA
+KYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRICKEESFHQRQG
+WEILYELSHGTPEQKQMAQDAVNRFYGPALQMFGPPDEDSPNSRQSMAWKVKRFSNDDLR
+QRFVDMIVPQAEALGLTLPDPDLKWNEERGHYDFGELDWDEFMSVIKGDGPMNTQRMARR
+IQAHEDGAWVREAAAAYARRQAEQNAPAETHLIGA
+>TT9_LFPAFLNI_01946
+MTQTSSPQHLASVPSPEDAAGQENFDRLIAEDSRIEPRDWMPEAYRKSLTRQVSQHAHSE
+IIGMQPEANWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGTPRDELNAQLLSGRA
+KYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRICKEESFHQRQG
+WEILYELSHGTPEQKQMAQDAVDRFYGPALQMFGPPDEDSPNSRQSMAWKVKRFSNDDLR
+QRFVDMIVPQAEALGLTLPDPDLKWNEERGHYDFGELDWDEFMSVIKGDGPMNTQRMARR
+IQAHEEGAWVREAAAAYARRQAEQNAPAETHLIGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000564.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000564.fa
new file mode 100644
index 0000000000000000000000000000000000000000..337b244f10d6b087341285576ccf2eaea56bbd20
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000564.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00839
+---------------MTDDAQLTPAAVAPHKKVGMLPPYAAGKPPVAVPGLRPYKLSSNE
+NPHAPVAGVIERVRGVVTGPEGAPSTLCRYPDTLSTGLREALAAHLDVPADDVVTGAGSL
+GALSQVITAFAGH-GEAGRGDEVIFAWRSFEAYPIVVRTAGAVDVQVPLTADHRHDLPAM
+LAAITDRTRVILLCTPNNPTGPVLTTAEVEGFLAEVPEHVLVVIDEAYVEFVRDEDAVRG
+LDMYRKHANVVVLRTFSKAHGLANLRVGYSVSRPEITKALRTVATPFAVSTVAEEAAIAS
+LEHLDEVLEGVQLVVDERERVAAALAEAGWDVPASQANFVWLPLGERTADFAAAAQAKAL
+SVRAFAGEGVRVSIGEQEANDRFLEVARDFLK
+>KBS0714_MOLHKGIG_02003
+MGRITASAARITLVAMTDDAQQTPAVVAPHKKVGMLPPYAAGKPPVAVPGLHPYKLSSNE
+NPYAPVSGVIDRVRQVVTGPEGAPSTLCRYPDTLSTGLRQALAAHLDVPADDVVTGAGSL
+GALAQVITAFAGH-GEAGEGDEVIFAWRSFEAYPIVVRTAGAVDVQVPLTADHRHDLPAM
+LEAITERTRVILLCTPNNPTGPVLTTAEVEDFLARVPAHILVVIDEAYVEFVRDEDAVKG
+LEMYRKHANVVVLRTFSKAHGLANLRVGYSVSQPEITKALRTVATPFAVSTVAEEAAIAS
+LEHLDEVLERVQIVVDERERVAAALAEAGWDLPASQANFVWLPLGERTQAFAEAAQARAL
+SVRAFAGEGVRVSIGEKEANDRFLEVARDFLA
+>KD337_NAFOICDF_00776
+---------------MT-DVTSGSSGVAAHRKVSLLPPYAAGKPPVAVPGLRPYKLSSNE
+NPFAPVPAVVERIHEVVAGAEGEPSPVCRYPDPLSTALRERLAAHLDVPADDIVTGGGSL
+GALTQVITAFAGDGGEDGAPDEVVFAWRSFEAYPIVVRTAGAKDVQVPLTADGRHDLPAM
+LAAITERTKVMLLCTPNNPTGPVLTTAEVEDFLAQVPPHVLVVIDEAYVEFVRHPDAVDG
+PAMYRRHPNVVVLRTFSKAHGLANLRVGYSVSRPEVTASLRTVAVPFAVSTVAEQAAIAS
+LDHLDEVLERVQTVVDERERVVAALAEAGWDVPETHANFVWLPLGERGADFAAAAGERAL
+SVRAFP-EGVRVSISEREANDRFLEVARAFQR
+>SA211_MHAAABBN_01713
+MVPLTASAARITLVAMTDDAQQTPAVVAPHKKVGMLPPYAAGKPPVAVPGLHPYKLSSNE
+NPYAPVPGVIDRVRQVVTGPEGAPSTLCRYPDTLSTGLRQALAAHLDVPADDVVTGAGSL
+GALAQVITAFAGH-GEAGEGDEVIFAWRSFEAYPIVVRTAGAVDVQVPLTADHRHDLPAM
+LEAITERTRVILLCTPNNPTGPVLTTAEVEDFLARVPAHILVVIDEAYVEFVRDEDAVKG
+LEMYRKHANVVVLRTFSKAHGLANLRVGYSVSQPEITKALRTVATPFAVSTVAEEAAIAS
+LEHLDEVLERVQVVVDERERVAAALAEAGWDLPSSQANFVWLPLGERTQAFAEAAQARAL
+SVRAFADEGVRVSIGEKEANDRFLEVARDFLT
+>TT9_LFPAFLNI_01941
+MGRITASAARITLVAMTDDAPQTPAVVAPHKKVGMLPPYAAGKPPVAVPGLHPYKLSSNE
+NPYAPVSGVIDRVRQVVTGPEGAPSTLCRYPDTLSTGLRQALAAHLDVPADDVVTGAGSL
+GALAQVITAFAGH-GEAGEGDEVIFAWHSFEAYPIVVRTAGAVDVQVPLTADHRHDLPAM
+LEAITERTRVILLCTPNNPTGPVLTTAEVEDFLARVPAHILVVIDEAYVEFVRDEDAVKG
+LEMYRKHANVVVLRTFSKAHGLANLRVGYSVSQPEITKALRTVATPFAVSTVAEEAAIAS
+LEHLDEVLERVQVVVDERERVAAALAGAGWDLPSSQANFVWLPLGERTQAFAEAAQAQAL
+SVRAFAGEGVRVSIGEQEANDRFLEVARDFLT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000565.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000565.fa
new file mode 100644
index 0000000000000000000000000000000000000000..faa6ad50331f971b96312ef67b2120535c2d08ca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000565.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00857
+MAEPIHIGAAADIPEGEAVVVPAATAGTSDDVAVFHAEDGAFYAIDDTCTHEDASLAEGW
+LEGTQVECPLHSAQFCLKSGEALCLPATRPVGTHPVQERDGQLYLT--PGA
+>KBS0714_MOLHKGIG_02000
+MAEPIHIGAAADVPEGEAIVVPAATAGTRDDVAVFHTDAGEFHAIDDTCTHEDASLAEGW
+LEDDRVECPLHAAQFCLRTGEALCLPATKGVGVHRVEEREGQLYLV--PGA
+>KD337_NAFOICDF_00793
+MSREINVGPASAVPEGESLLVPNDTTGTKDHIGVFHAEDGAFYAIDNTCTHQDYALSEGF
+VEDCRVECPLHGASFDLRTGEALSLPATKPVGTHRVEERDGDLWLTVEDGE
+>SA211_MHAAABBN_01694
+MAEPIHIGAAADVPEGEAIVVPAATAGTRDDVAVFHTDAGEFHAIDDTCTHEDASLAEGW
+LEDDRVECPLHAAQFCLRTGEALCLPATKGVGVHRVEEREGQLYLV--PGA
+>TT9_LFPAFLNI_01926
+MAEPIHIGAAADVPEGEAIVVPAATAGTRDDVAVFHTDAGEFHAIDDTCTHEDASLAEGW
+LEDDRVECPLHAAQFCLRTGEALCLPATKGVGVHRVEEREGQLYLV--PGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000567.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000567.fa
new file mode 100644
index 0000000000000000000000000000000000000000..703170e77fdea62ea5fe20b0b0acfdb6af9a4a81
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000567.fa
@@ -0,0 +1,70 @@
+>AS2_ACLBLIBL_00859
+MPVRHNTQPLVRDLFTTEAKAARGGRPAAGMFLSSGDCTAAEICAGAGLDYLLIDGEHAPLSLENVQAQLRTIAGYGVPV
+MTRVPFLDWISIKQYLDLGAQTLLVPMIDTPEQAAEAVRALRYPPHGDRGVGSALARSGRWNRIEGYLQHDEEHVSLFVQ
+IETVRGVENAAAIAAVPGVDGVFVGPSDLSASMGLIGQQSHADVVAAVRRVIEACNAAGTTVGVNAFATDQAQAYADAGA
+DFVNVGADVALMARGAEALADRWCPTPGTGADEGAGEGAGAGAGARANARPARRTDGGRPTRPPAPHAWECGVMDDVAPA
+HPALAPQPGRPALRHRFADLFPELAVPWQAQETDGPELVLLNTGLVTELGLDADWLASDDGVRLLTGEQLGPDARPVAQA
+YAGHQFGHYSPRLGDGRALLLGELVPPRRTRDANDAPQALPTWRELHLKGSGRTPFARGDADGQAVLGPMLREYAVSEAM
+HALGVPTTRALAVVATGRPVRRAGWQPGALLARTAASHLRVGSFQYAAALPERAD-PVAVLRRLVDEAILRHHPHAAEAE
+NPALALYEAVIAAQAELVARWMLVGFVHGVMNTDNMTLSGETIDYGPCAFLDAFDPAASFSSIDTQGRYAFGNQGPVAAW
+NLARLGEALVPVLDDDAGRAVELAQEALGGFQATHLAAWRGGLRAKLGLSEEVTDADVAALTDRLFPVLAAARTDWTGFW
+VRLAEHVPGGRGRGRAGRGRRRTECPAECRSGRADGRRAGGGADAGPGRGRPGCRGRVAARLAGAGPRRGPDAGGEPRLH
+PAEPPARRGPHRRRGRGPGAGAPPAGGRHR-------PVHPA---PGPRAVRRAGPVGRGPVRDVLRDVRRGRRGLPYSR
+SPLPAPRPNSHRPTAFVWESGNLPPLSCGETGVPVSHTKGDEGRTLLLTRGCGGARPLTPGRATSAARSGRRGPAGPPRS
+RGR
+>KBS0714_MOLHKGIG_01998
+MTTS----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------APTLSSHFADTFPELALPWQAQVTDGPQLVLLNAGLAAELGLDAEWLASDDGVRFLTGEQPGPHARPVAQA
+YAGHQFGHYSPRLGDGRALLLGELTAPD------------GRLHDLHLKGSGRTPFARGNADGQAVLGPMLREYVVSEAM
+HALGVPTTRALAVVATGHPVRRETVLPGAVLARTAASHLRVGTAQYAAALPEQAH-PTEVLRRIVDEAIARHHPHATDAE
+HPALALYEAVIAAQAELVSRWMLVGFVHGVMNTDNMTLSGETIDYGPCAFIDAFDPAASFSSIDTQGRYAYGNQGPIAAW
+NLARLGEALVPVLDDDPDRAVALAQEALGRFHGAHLAAWRGGLRDKLGLPASVAEDDVAALTDRLFPWLAAARADWTSFW
+VRLAEH----------------TAAPVDDDAARTEAARLVPGAPDPAG---------LAAWLADWRA-MGPDPARMRAVN
+PVYIPRN---HLLDEALTAAEGGDLAPVHRLLEAVTDPFTPR---PGFERYAEPGPADGAP-------------------
+---------------FV--------TYCGT--------------------------------------------------
+---
+>KD337_NAFOICDF_00795
+MPV-----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------PALQHRFADRLPELAVPWQARPAPAPTLAALNAPLAAELGLDPAWLATDAGLAFLTGTEPGPGARPVAQA
+YAGHQFGSYSPLLGDGRALLLGELTAPD------------GTLHDVHLKGSGLTPFSREGSDGLAALGPMLRELVVSEAL
+HALGIPTTRALAVVATGGPVRRQRVLPGAVLVRVADSHLRVGTFQHAAALVHAGRAPEDLLTRLVAESLERHHPGHADDA
+APALALLRAVVAAQAELVARWMLMGFVHGVMNTDNMTVSGQSIDFGPCAFLDGFDPDAVFSSIDRGGRYAYGAQPRIALW
+NLNRFAETLLPLLAPDPEAAVAAAEEALGGFAPAFDAAWQGGLAAKLGLARSADSDALAAELLRL---LAQDRADWTASW
+ANLSD-------------------------------------LPLPAD------------WLARWRA-LDPDPELARAAN
+PLRVPRN---RPLQAALDAAEDGDLADVERILAAVREPFTPRADASDLDVPPAPGAGGEAP-------------------
+---------------FV--------TFCGT--------------------------------------------------
+---
+>SA211_MHAAABBN_01692
+MTTS----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------VPALSSHFADTFPELALPWQAQATDGPRLVLLNAGLAAELGLDAEWLASDDGVRFLTGEQSGPDARPVAQA
+YAGHQFGHYSPRLGDGRALLLGELTAPD------------GRLHDLHLKGSGRTPFARGNADGQAVLGPMLREYVVSEAM
+HALGVPTTRALAVVATGHPVRRETVLPGAVLARTAASHLRVGTAQYAAALPEQAH-PTEVLRRIVDESIARHHPHATDAE
+HPALALYEAVIAAQAELVSRWMLVGFVHGVMNTDNMTLSGETIDYGPCAFIDAFDPAASFSSIDTQGRYAYGNQGPIAAW
+NLARLGEALVPVLDDDPDRAVPLAQEALGRFHGAHLAAWRGGLRDKLGLPASVAEDDVAALTDRLFPWLAAARADWTSFW
+VRLAEH----------------TAAPVDDDAARTEAARLVPGAPDPAG---------LAAWLAEWRA-MGPDPARMRAVN
+PVYIPRN---HLLDEALTAAEDGDLTAVHRLLEAVTDPFTPR---PGFERYAEPGPADGAP-------------------
+---------------FV--------TYCGT--------------------------------------------------
+---
+>TT9_LFPAFLNI_01924
+MTTS----------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------VPALSSHFADTFPELALPWQAQATDGPQLVLLNAGLAAELGLDAEWLATDDGVRFLTGEQPGPGARPVAQA
+YAGHQFGHYSPRLGDGRALLLGELTAPD------------GRLHDLHLKGSGRTPFARGNADGQAVLGPMLREYVVSEAM
+HALGVPTTRALAVVGTGHPVRRETVLPGAVLARTAASHLRVGTAQYAAALPEQAH-PTEVLRRIVDEAIARHHPHATDAE
+HPALALYEAVIAAQAELISRWMLVGFVHGVMNTDNMTLSGETIDYGPCAFIDAFDPAASFSSIDTQGRYACGNQGPIAAW
+NLARLGEALVPVLDDDPDRAVALAQEALGRFHGAHLAAWRGGLRDKLGLPASVAEDDVAALTDRLFPWLAAARADWTLFW
+VRLAEH----------------TAAPVDDDAARTEAARLVPGAPDPAG---------LAAWLADWRA-MGPDPARMRAVN
+PVYIPRN---HLLDEALTAAEDGDLTAVHRLLEAVTDPFTPR---PGFERYAEPWPEDGAP-------------------
+---------------FV--------TYCGT--------------------------------------------------
+---
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000573.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000573.fa
new file mode 100644
index 0000000000000000000000000000000000000000..028ac2621ca0453824def65a2277fc2e1ba77076
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000573.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00867
+MRHL-----RDHLSHRAVGVKQSAVRDVFDIAMDPNLVSLAGGNPWLADLPLDELGRIAS
+DLMTRFGTESLQYGPGQGTEEMRAAAAAVMAADGIPDADPELVVITPGSQAAIDTACRAF
+GNPGDVVVVEDPTFVGALTTFNTWELDAVATGTDEHGLVPAALDETLTRLAAEGRRVAFL
+YTIPSFANPSGALLPADRRAEVAAICERHGVLIVEDNPYGQIAFDGDPVAPIAAEHRDGV
+VYLGTMSKIFSPGVRIGWALVPAELKREFYLSAESAFIHASTYSQMLSTAFVTQLDWQGH
+VRHVTGLYRERAGVLVDAVREHWDPGVEFITPRGGFFLWATLPGGVDTIELMHRGIEAGA
+VFVPGGAFTPVEGVHSTLRLAYPFVEAERLVEGVRRLAPVVNDAVARAR
+>KBS0714_MOLHKGIG_01990
+MRNL-----RDHLSQRAVGVKQSAVRDVFDIAMDPNLVSLAGGNPWLADLPLDELGRIAS
+DLMTRFGTESLQYGPGQGTEEMRAAAATVMAADGIPDADPDLVVITPGSQAAIDTACRAF
+ANPGDVVVVEDPTFVGALTTFATWQLEAVATGTDDQGLVPAALDETLTRLAAEGRRVAFL
+YTIPSFANPSGALLPPGRRAEVGAICEKHGVLIVEDNPYGQIAFDGEPVAPIAADHRDNV
+VHLGTMSKIFSPGVRIGWALVPAALKREFYLCAESAYIHASTYSQMLSTAFVTQLDWQGH
+VRHVTGLYRERAGALVDAVREHWDPGVEFITPQGGFFLWATLPAGVDTLEVMHRGIEAGA
+VFVPGAAFTPVEGTHSTLRLAYSFVDAEKLVEGVRRLAPAVNESIARAR
+>KD337_NAFOICDF_01757
+MSTLDPAGARAHLARRATTVQQSAVRDVFDIAMDPDLVSLAGGNPWLAGLPLEELGATAA
+RLVAEQGTASLQYGPGQGLECMRVAACAVMAADGIPDADPELVVITPGSQAAIDTACRAF
+ADPGDVVVVEDPTFVGALTSFQTWELEAVATPTDEHGLVPADLDATLARLEAEGRRVAFL
+YTIPSFANPSGLLLPADRRDDVAAVCERHGVLIVEDNPYGQIAFDGAPVAPIAAAHRERT
+VYLGTMSKIFSPGVRVGWALVPEALHREFYLCAESAFIHASTTSQMLSTAFVTEYDWQDH
+VRGVTGLYRSRAQALQAAIAEHWDPGFTFTPPAGGFFLWGSLPAGVDAVELMHRGIAAGA
+VFVPGAAFTPVPGTHSTLRLAYSFVDEETLAEGVRRLAPVVNTAVEGAR
+>SA211_MHAAABBN_01684
+MRNL-----RDHLSQRAVGVKQSAVRDVFDIAMDPNLISLAGGNPWLADLPLDELGRIAS
+DLMTRFGTESLQYGPGQGTEAMRAAATAVMAADGIPDADPDLVVITPGSQAAIDTACRAF
+ANPGDVVVVEDPTFVGALTTFTTWQLEAVATGTDDHGLVPAALDETLTRLAAEGRRVAFL
+YTIPSFANPSGALLPPGRRAEVGAICEKHGVLIVEDNPYGQIAFDGEPVAPIAADHRDNV
+VHLGTMSKIFSPGVRIGWALVPAALKREFYLCAESAYIHASTYSQMLSTAFVTQLDWQGH
+VRHVTGLYRERAAALVDAVREHWDPAVEFITPQGGFFLWATLPVGVDTLEVMHRGIEAGA
+VFVPGAAFTPVEGTHSTLRLAYSFVAAEKLVEGVRRLAPAVNESIARAR
+>TT9_LFPAFLNI_01916
+MRNL-----RDHLSQRAVGVKQSAVRDVFDIAMDPNLVSLAGGNPWLADLPLDELGRIAS
+DLMTRFGTESLQYGPGQGTEEMRAAATAVMAADGIPDADPDLVVITPGSQAAIDTACRAF
+ANPGDVVVVEDPTFVGALTTFTTWQLEAVATGTDDHGLVPAALDETLTRLAAEGRRVAFL
+YTIPSFANPSGALLPPGRRAEVGAICEKHGVLIVEDNPYGQIAFDGEPVAPIAADHRDNV
+VHLGTMSKIFSPGVRIGWALVPAALKREFYLCAESAYIHASTYSQMLSTAFVTQLDWQGH
+VRHVTGLYRERAGALVDAVREHWDPGVEFITPQGGFFLWATLPAGVDTLEVMHRGIEAGA
+VFVPGAAFTPVEGTHSTLRLAYSFVDAEKLVEGVRRLAPAVNESIARAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000574.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000574.fa
new file mode 100644
index 0000000000000000000000000000000000000000..80d1903f2197ebe70b1084f9c118e92b7c9163a8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000574.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00868
+MRQRPASRAVLLVGAAAAVGLLGGCAAEPGAPAADGSAQGDALPRPEVDGYAPLTVWLTV
+PAAEAVPGSTGRAYGCDDLLVPVQTVPADAPDDADAALDFLFSDERGWHGDPSLWNAVFE
+TRESLTPTGHRLEGDVDVFTFTGTVTAEGECEAERIRAQLQETAAAHTSAGQVRLEVDGR
+PLDDVLGLAPLALGDEV-----DVPESGADPSESPTEPADEPWEEPAEDPWA---EPTED
+TWSEPTED--PWAESEESAEPSPTAW--EEPAEETWEPQDETAPTEEDAPTEWDGTVDD-
+------------GSASEDVPAEVEEPPAQDEGADAADESAPAEDAGADGAGNLGIGDPDA
+TEPS-AP----------------
+>KBS0714_MOLHKGIG_01989
+MRPPSPPRALRLMGAVAAACLLAGCAVDPG--LAEDSASDDGVPLPATEGYQPLTVYLAV
+AETEAVPGTSGRPFGCGDLLVPVQTVPTDTEDEADAALDFLFADEQGWHGDPSLWNAVFD
+ARETLTPTGHRREGDVEIFTFTGTVTPEDDCTAERIRAQLQATAAAFTSAGQVRLEVDGR
+DLDDVLGLEPLRLGESV-----DVPQ--GDPT-----PSGEPSDESGEQTWAPEGESPED
+TWAPAEPSDETWAPAEES------SWGPAEPTQGTWSPGPE-------------------
+------------------------------------------------------------
+--PS-AP----------------
+>KD337_NAFOICDF_00805
+MRIRPTPRVRLAAVLATSAALTSGCGALTG--QGLDEPKE-------------LTVHLTV
+PRADAASSFEGRPYGCDDLLVPVTTAPSSGVDHGDAALDFLFSDLQGEHGDPALQNAVKA
+TADTLHPTGHHRDGSTEVFTFDGTVTAEDECAAQRIRAQLQETARAQSPVPDVRLEVGGR
+PLDEVLGLPALSLGDPVKGGAASTPR--ATPT-----PESTPS--PTATPTP---TPTTV
+PGSSASPA--PTSAS-PTATPAPSTS--AAPSTTGPSSASPTAETSSAAPASPDPASADP
+ATAAPTSASATAGGASPSVEPTDGTSLRSPGAGDATATTAPLDGLDGGAAGGTGTGGADA
+TAPGGAPSAGAAAGAGAGSSATG
+>SA211_MHAAABBN_01683
+MRPTPPSRALRLTGAVAAACLLAGCAVAPD--LAEDSASDDGVPLPATEGYQPLTVYLAV
+AEPEAVPGTSGRPFGCGDLLVPVQTVPTDTEDEADAALDFLFADERGWHGDPSLWNAVFD
+ARETLTPTGHRRAGDVEIFTFTGTVTPEDDCTAERIRAQLQATAAAFTSAGQVRLEVDGR
+DLDDVLGLEPLRLGESV-----DVPQ--GDPT-----PSGEPSDGSGEQTWAPEGESSED
+TWAPAEPS--TWAPTEES------SWGPAEPTQGTWSPGQE-------------------
+------------------------------------------------------------
+--PS-AP----------------
+>TT9_LFPAFLNI_01915
+MRPPSPSRALRITGAVAAACLLAGCAVDPG--LAEDSASDDGVPLPATEGYQPLTVYLAV
+AEAEAVPGTSGRPFGCGDLLVPVQTVPTDTEDEADTALDFLFADERGWHGDPSLWNAVFD
+ARETLTPTGHRRAGDVEIFTFTGTVTPEDDCTAERIRAQLQATAAAFTSAGQVRLEVDGR
+DLDDVLGLEPLRLGEPV-----DVPR--GVPA-----PSGEPSDGSGEQTWAPEG-----
+----------------ES------SWGPAEPTQGTWSPAQE-------------------
+------------------------------------------------------------
+--PS-TP----------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000576.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000576.fa
new file mode 100644
index 0000000000000000000000000000000000000000..20eaf54fbdcca70ed072726a96b2fb2c30572ad0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000576.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00871
+MSDERARSFSASTASAADDGARGTGTTRVKRGLADMMKGGVIMDVVNAEQARIAEDAGAV
+AVMALERVPADIRAQGGVARMSDPDLIDGIVEAVSIPVMAKARIGHFVEAQVLQALKVDF
+IDESEVLSPADYVNHIDKWDFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEA
+VKHIRTIRKEIAQLQGLAQDELYVAAKELQAPYELVREVAETGALPVVMFTAGGVATPAD
+AALMMQMGADGVFVGSGIFKSGNPAERARAIVKATAQFDDPMAVAEASRGLGEAMVGINV
+GDLPAPHRLAERGW
+>KBS0714_MOLHKGIG_01986
+MSDERARSFSASTASAADDGARGTGTTRVKRGLADMMKGGVIMDVVNAEQARIAEDAGAV
+AVMALERVPADIRAQGGVARMSDPDLIDGIVEAVSIPVMAKARIGHFVEAQVLQALKVDF
+IDESEVLSPADYVNHIDKWDFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEA
+VKHIRTIRKEIAQLQGLAQDELYVAAKELQAPYELVREVAETGALPVVMFTAGGVATPAD
+AALMMQMGADGVFVGSGIFKSGNPAERARAIVKATAQFDDPMAVAEASRGLGEAMVGINV
+GDLPAPHRLAERGW
+>KD337_NAFOICDF_00807
+MSDDRAQSFSASTGAAADDGARGTGTTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGAV
+AVMALERVPADIRAQGGVARMSDPDLIDGIVEAVSIPVMAKARIGHFVEAQVLQALKVDF
+IDESEVLSPADYVNHIDKWDFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEA
+VKHIRTIRKEIAQLQGLAQDELYVAAKELQAPYELVCEVAETGALPVVMFTAGGVATPAD
+AALMMQMGADGVFVGSGIFKSGNPAERARAIVKATAQFDDPMAVAEASRGLGEAMVGINV
+GDLPAPHRLAERGW
+>SA211_MHAAABBN_01680
+MSDERARNFSASTASAADDGARGTGTTRVKRGLADMMKGGVIMDVVNAEQARIAEDAGAV
+AVMALERVPADIRAQGGVARMSDPDLIDGIVEAVSIPVMAKARIGHFVEAQVLQALKVDF
+IDESEVLSPADYVNHIDKWDFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEA
+VKHIRTIRKEIAQLQGLAQDELYVAAKELQAPYELVREVAETGTLPVVMFTAGGVATPAD
+AALMMQMGADGVFVGSGIFKSGNPAERARAIVKATAQFDDPMAVAEASRGLGEAMVGINV
+GDLPAPHRLAERGW
+>TT9_LFPAFLNI_01912
+MSDERARSFSASTASAADDGARGTGTTRVKRGLADMMKGGVIMDVVNAEQARIAEDAGAV
+AVMALERVPADIRAQGGVARMSDPDLIDGIVEAVSIPVMAKARIGHFVEAQVLQALKVDF
+IDESEVLSPADYVNHIDKWDFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEA
+VKHIRTIRKEIAQLQGLAQDELYVAAKELRAPYELVREVAETGTLPVVMFTAGGVATPAD
+AALMMQMGADGVFVGSGIFKSGNPAERARAIVKATAQFDDPMAVAEASRGLGEAMVGINV
+GDLPAPHRLAERGW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000579.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000579.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6d1da7be7abdf4ba5f618b4d91adf00882e38ac4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000579.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00877
+MDPLIQASAPVGTFTATTDAVAGSLGLSAALGTIPLLTFFVMLLLVKAKAWQAGLVSLTAAVLVAILAFGMPADLTLLSA
+SQGAVFGFFPIVWIVVMALWFYQVTVLSGRFEDMRAIFDTVGGGDIRIQAVLIAFCFGGMLEALAGFGAPVAITATMLLA
+LGLPPLKTAVVVLLANTAPVAFGAVGIPITTAGQLTDIPAAEIGAIVGHQAPFVAVLVPFFLVWIIDGFRGIRETWPALL
+TIGGTFALGIWWASTQFSYELTDVVASLLAMASAVVLLRFWRPKGAAEADARLGITPTRPAGDLTPGRIWMAVLPYLLVI
+TVFGIAKLWTLGFDLPGWLASTNVRIPWPGLDGRLVTAAGEPITGTVYSFQWLSSPGTLLLITGLLVALIYSVFTGGGRF
+PLRFGDALAEIGRCFWKMRWSGLTIVLVLSLAYVMNFSGQTLAMGTAVAGVGAAFAFLSPVLGWLGTAVTGSDTSANALF
+ATLQQTAAEEAGLDPSLMVAANTSGGVVGKMISPQSLAIAATAVSMEGQESKILRTVLPWSVALLLMVCTIVFLQSNVLS
+WMLP---
+>KBS0714_MOLHKGIG_01981
+----------MHTFTPTPDA-AGSVALSAALGVLPLLTFFATLLGLRLKAWQSGLAALVVALLVAVLGFHMPAHLAALAA
+AQGATFGLFPIVWIVVMALWFYQVTVLSGRFDDMRAIFDSLGGGDIRIQAVLIAFCFGGLLEALAGFGAPVAITATMVLG
+LGVPPLRAATAVLLANTAPVAFGAVGTPITTAGTLTGIPATHIGAIVGHQAPFVAVFVPFLLVFIIDGLRGVRQTWPALI
+VIGASFAVAIWLASTHFSYELTDVVASLVSLAAAVLLLRFWRPRGAEEARQRLDAPARAAAQDLTPGRIFMAVLPYIVVV
+AVFALAKLVP---SITAALNSATAKIPWPGLDGHLVDASGAPLASTVYKFEWLASPGTLLLIAGLIMAVVYSRFDHDGRF
+PLSVGNALAEIGRCFARMRWSALTIVIVLSLAYVMNFSGQTVAMGTWVAGLGAAFVFLSPVLGWLGTAVTGSDTSANALF
+STLQQTAATNIGADPALLVAANTSGGVVGKMISPQSLAIAATAVGMEGRESEILRRVVVWSLVLLLAVCTLVYLQSNVLA
+WMLPAAG
+>KD337_NAFOICDF_00812
+----------MHTFTPTPDA-AGSVALSAALGVLPLLTFFATLLGLRLKAWQSGLAALVVALLVAVLGFHMPAHLAALAA
+AQGATFGLFPIVWIVVMALWFYQVTVLSGRFDDMRAIFDSLGGGDIRIQAVLIAFCFGGLLEALAGFGAPVAITATMVLG
+LGVPPLRAATAVLLANTAPVAFGAVGTPITTAGTLTGIPASHIGAIVGHQAPFVAVFVPFLLVFIIDGLRGVRQTWPALI
+VIGASFAVAIWLASTHFSYELTDVVASLVSLAAAVLLLRFWRPRGAEEARQRLDAPARAAAQDLTPGRIFMAVLPYIVVV
+AVFALAKLVP---PITAALNSVTAKIPWPGLDGHLVNASGAPLASTVYKFEWLASPGTLLLIAGLIMAVVYSRFDHDGRF
+PLSVGNALAEIGRCFARMRWSALTIVIVLSLAYVMNFSGQTVAMGTWVAGLGAAFVFLSPVLGWLGTAVTGSDTSANALF
+STLQQTAATNIGADPALLVAANTSGGVVGKMISPQSLAIAATAVGMEGRESEILRRVVVWSLVLLLAVCTLVYLQSNVLA
+WLLPAAG
+>SA211_MHAAABBN_01675
+----------MHTFTPTPDA-AGSVALSAALGVLPLLTFFATLLGLRLKAWQSGLAALVVALLVAVLGFHMPAHLAALAA
+AQGATFGLFPIVWIVVMALWFYQVTVLSGRFDDMRAIFDSLGGGDIRIQAVLIAFCFGGLLEALAGFGAPVAITATMVLG
+LGVPPLRAATAVLLANTAPVAFGAVGTPITTAGTLTGIPASHIGAIVGHQAPFVAVFVPFLLVFIIDGLRGVRQTWPALI
+VIGASFAVAIWLASTYFSYELTDVVASLVSLAAAVLLLRFWRPRGAEEARQRLDAPARAAAQDLTPGRIFMAVLPYIVVV
+AVFALAKLVP---SITAALNAATAKIPWPGLDGHLVDASGAPLASTVYKFEWLASPGTLLLIAGLIMAVVYSRFDHDGRF
+PLSVGNALAEIGRCFARMRWSALTIVIVLSLAYVMNFSGQTVAMGTWVAGLGAAFVFLSPVLGWLGTAVTGSDTSANALF
+STLQQTAATNIGADPALLVAANTSGGVVGKMISPQSLAIAATAVGMEGRESEILRRVVVWSLVLLLAVCTLVYLQSNVLA
+WMLPAAG
+>TT9_LFPAFLNI_01907
+----------MHTFTPTPDA-AGSVALSAALGVLPLLTFFATLLGLRLKAWQSGLAALVVALLVAVLGFHMPAHLAALAA
+AQGATFGLFPIVWIVVMALWFYQVTVLSGRFDDMRAIFDSLGGGDIRIQAVLIAFCFGGLLEALAGFGAPVAITATMVLG
+LGVPPLRAATAVLLANTAPVAFGAVGTPITTAGTLTGIPASHIGAIVGHQAPFVAVFVPFLLVFIIDGLRGVRQTWPALI
+VIGASFAVAIWLASTYFSYELTDVVASLVSLAAAVLLLRFWRPRGAEEARQRLDAPARAAAQDLTPGRIFMAVLPYIVVV
+AVFALAKLVP---SITAALNSATAKIPWPGLDGHLVDASGAPLASTVYKFEWLASPGTLLLIAGLIMAVVYSRFDHDGRF
+PLSVGNALAEIGRCFARMRWSALTIVIVLSLAYVMNFSGQTVAMGTWVAGLGAAFVFLSPVLGWLGTAVTGSDTSANALF
+STLQQTAATNIGADPALLVAANTSGGVVGKMISPQSLAIAATAVGMEGRESEILRRVVVWSLVLLLAVCTLVYLQSNVLA
+WMLPAAG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000585.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000585.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bb17255807c3e926cbef65085a8291a1560f4eef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000585.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00888
+MSDGAAAVSRPGASARPSRRRRVLYYAHQHGSGHVRHAANLAATGAFDVTVVSAHPDAAR
+MLLAGTPVLPLPSDVVPGHVQPERSPLHWTPVGPQIRDRFAALHDAARDVRPDVCVVDVS
+VEAALFLRLAGWPVLHRRMHGERTDPAHALVYAEADGLFAHYAEELEDPAWREAHAGRTA
+FLGVPDVTGRLGARATTTTATTTAAGGSAPRVAVIAGTGGGGVRAADLARAAAAVPEATW
+EVYGPVAGADELQAPGGAAGSRSSDADATTGTAPTAGVALPANVTLHGWVEAPASRAAEA
+DVVVVSAGHNAAVDAARSGRPVVLAPEPRPFDEQHVFAREARRAAGVPWCAWEDPDADWA
+GAVRGALADPSAADRLAALLLVEPGEYRRRWEAAVEAALEATQG
+>KBS0714_MOLHKGIG_01971
+MA---------------PARRRVLYYAHQHGAGHLRHAAGLASTGAFDVTVVTAHPRAAE
+LLPADVPVIPLPSDLVPGHEQPARSPLHWSPVGPEIRARFDALHAAAQRVGPDVCVVDVS
+VEAALFLRLAGWPVLHRRMHGERTDPAHALVYAEADGLFAHYAAELEVPAWRAAHADRVT
+YLGVADVTGRLGTRTTTTS-----TARAAPRVAVIAGTGGGGVRAADLARAASAVPEATW
+EVYGPIAGVGEPEAPGGLAAE-----------------AMPATVTLHGWVQAPARRAADA
+DVVVVSAGHNAVVDAARSGRPVVLAPEPRPFDEQRVFVREIHRAAGVPWCAWEDPDADWA
+GAVRGALADPTAADRLAGLLLVAPDEYRRRWEAAIEGALG----
+>KD337_NAFOICDF_00829
+MS---------------GRRLRVLHYAHQHGSGHVRHAATLIRADVADVTVATAHPDAAR
+LLPTGTRIVPLPTDIVPGHGQPEGSPLHHTPVGPAIQARFDALHDAARAVRPDVCVVDVS
+AEAALFLRLAGYPVVHRRMHGDRTDPAHRLVYAEADALFAHYGEVLEDPAWQAEFGARTA
+HLGVPDADGRLG-RTAAPA-----RAGEAPRVVAVTGTGGGGVAARDIARAARSTPGARW
+HVIGPVRDAG--------------------------GADLPENLELQGWVEDVPAALAAA
+DVVVVSAGHNAAVDAAHSGRPVVLAPEERPFAEQRRFAEAVERAAGVPWRAWEDPEADWA
+GAVARALGDPAAADRLAAALLRPPAEHAAGWGALLERAAASAQ-
+>SA211_MHAAABBN_01665
+MA---------------PARRRVLYYAHQHGAGHLRHAAGLASTGAFDVTVVTAHPRAAE
+LLPADVPVIPLPSDLVPGHQQPARSPLHWSPVGTEIRARFDALHAAAQRVDPDVCVVDVS
+VEAALFLRLAGWPVLHRRMHGERTDPAHALVYAEADGLFAHYAAELEVPAWRAAHADRVT
+YLGVADVTGRLGTRATTTS-----SAGAAPRVAVIAGTGGGGVRAADLARAASAVPEATW
+EVYGPIAGVGEPEAPGGLAAE-----------------AMPATVTLHGWVQAPARRAADA
+DVVVVSAGHNAVVDAARSGRPVVLAPEPRPFDEQRVFVREIHRAAGVPWCAWEDPDADWA
+GAVRGALADPAAADRLAGLLLVAPGEYRRRWEAAIEGALG----
+>TT9_LFPAFLNI_01897
+MA---------------PARRRVLYYAHQHGAGHLRHAAGLASTGAFDVTVVTAHPRAAA
+LLPADVPVIPLPSDLVPGHQQPARSPLHWSPVGTEIRARFDALHAAAQRVDPDVCVADVS
+VEAALFLRLAGWPVLHRRMHGERTDPAHALVYAEADGLFAHYAAELEVPAWRAAHADRVT
+YLGVADVTGRLGTRATTTS-----SAGAAPRVAVIAGTGGGGVRAADLARAASAVPEATW
+EVYGPIAGVGEPEAPGGLAAE-----------------AMPATVTLHGWVQAPARRAADA
+DVVVVSAGHNAVVDAARSGRPVVLAPEPRPFDEQRVFVREIHRAAGVPWCAWEDPDADWA
+GAVRGALADPAAADRLAGLLLVAPDEYRRRWEAAIEGALG----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000588.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000588.fa
new file mode 100644
index 0000000000000000000000000000000000000000..541afea1e57c5dff8e5b5a504863b373bd1c6632
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000588.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_00891
+MSAA-------------------VSVVVPYYRAQADLDRLTAALAAQRGVTGGLQLVVAD
+DGSPVPPMVGPDLPFDVVTVRQQDRGFRASAARALGAEAADGDVLAFLDGDMLPEPGYLA
+AAVAAVAEAPRDAAVVGRRRHLAEAWLERAWADGWRPGHEVPADARLADPAWLREGYRTT
+DELRRADSTGYRYVISAVLTVAREVYEDAGGFDPAFVGYGGEDWELAHRLWRVGAALRHA
+PDAVAWQAGADFGGRGDAAEAARVKAREALALASRIPATTARGHGLSLAGPLRVEARVRV
+PERADGAAAAVVAVDAVLRAAPGARVGVVGGLDEAAARALGDPRVRLLGEPDGGAAASQD
+LPPTPARGDLDAVRSVPDWSVDVRVPLRPAAAGARPDADAVAAWLLRLERAGVERVEVLG
+------EPGE--RAERAVLAVLTCARARWRRRRGGTSRVWRVPASRLGWAPVAAVPDLEA
+WWGGWG
+>KBS0714_MOLHKGIG_01968
+MSAA-------------------VSVVVPYYRAQADLDRLTAALAAQRGVTGGLQLVVAD
+DGSPVPPRVDPGLPFDVVTVRQQDRGFRASAARALGAEAADGDVLAFLDGDMLPEPGYLA
+AALAAVAEAPRDAAVVGRRRHLAEAWLERAWADGWRPGHEVPADALLAEPAWLRDGYRAT
+DDLRRADSTGYRYVISAVLTVAREVYEDAGGFDPAFVGYGGEDWELAHRLWRVGAALRHA
+PDAVAWQAGADFGGRGDAAEAARVKAREALVLVSRIPATTSRGHGLSLAGPLRAEARVRV
+PEGADGAAAAVVAVDAVLRAAPGARVGVVGGLDEAAARALGDPRVRLLGEPDGGAAAPED
+LPPTPARGDLDAVRSVPDWSVDVQVPLRPAAAGARPDTDAVAAWLLRLERAGVERVEVLG
+------EPGE--RAERDVLAVLTCARARWRPRRGGTARVWRVPASRLGWAPVAAVPDLEA
+WWGGWG
+>KD337_NAFOICDF_00832
+MTAPVAGREAAAETAGPEASVPEVSVVVPHYRAPADLERVVAALAAQDHPASRLQLVVAD
+DGSPEPPVLPAGLPFEAVVVAQEDHGFRASAARALGASAAEGRILAFLDGDMLPEPGYLT
+AACAAPA-ASVDAVVVGRRRHLDPALLE----SGWRPGEPVPEAARLPEPAWLAEAYQRS
+GDLAAADSTSYRYVISAVLTVAREVYADAGGFDPAFVGYGGEDWELAHRLWRVGGAFRHQ
+PAAVAWQAGEDFGGRGDAAERTAVKQREALRLAARITATTARGHGLSLPGPLRVGARVRA
+E--ASGDAAAVVGVDALLAAAPGARVGVTGLGSGAARAALADPRVWIMD--GGGEAARAD
+LPPAPARGDLGAVRGIPDWSCDVRTPLRPAAPGARPDAARAADWLLRLERAGVERVEVLG
+EPQAAEEPGEAGRGERPVLAVLTCSRALWRSRRGGDSRVWRVPAARLGWAPVARDVDLEA
+WWGGWG
+>SA211_MHAAABBN_01662
+MSAA-------------------VSVVVPYYRAQADLDRLTAALAAQRGLTGGLQLVVAD
+DGSPVPPRVGPGLPFDVVTVRQQDRGFRASAARALGAEAADGDVLAFLDGDMLPEPGYLA
+AALAAVAEAPRDAAVVGRRRHLAEAWLERAWVDGWRPGDEVPADARLAEPAWLREGYRAT
+DDLRRADSTGYRYVISAVLTVAREVYADAGGFDPAFVGYGGEDWELAHRLWRVGAALRHA
+PDAVAWQAGADFGGRGDAAEAARVKAREALVLASRIPATTARGHGLSLAGPLRVEARVRV
+PEGADGAAAAVVAVDAVLCAAPGARVGVVGGLDEAAARALGDPRVRLLGEPDGGAAASQD
+LPPTPARGDLDAVRSVPDWSVDVHVPLRPAAAGARPDADAVAAWLLRLERAGVERVEVLG
+------EPGE--RAERAVLAVLTCARARWRRRRGGTARVWRVPASRLGWAPVATVPDLEA
+WWGGWG
+>TT9_LFPAFLNI_01894
+MSAA-------------------VSVVVPYYRAQADLDRLTAALAAQRGLTGGLQLVVAD
+DGSPVPPRVDPGLPFDVVTVRQPDRGFRASAARALGAEAADGDVLAFLDGDMLPEPGYLA
+AALAAVAEAPRDAAVVGRRRHLAEAWLERAWAHGWQPGHEVPADARLAEPAWLREGYRAT
+DDLRRADSTGYRYVISAVFTVAREVYEDAGGFDPAFVGYGGEDWELAHRLWRVGAALRHA
+PDAVAWQAGADFGGRGDAAEAARVKAREALVLASRIPATTARGHGLSLAGPLRVEARVRV
+PEGADGAAAAVVAVDAVLCAAPGARVGVVGGLDEAAARALGDPRVRLLGEPDGGAAADED
+LPPTPARGDLDAVRSVPDWSVDVHVPLRPAAAGARPDADAVAAWLLRLERAGVERVEVLG
+------EPAE--PGERAVLAVLTCARARWRHRRGGTARVWRVPASRLGWAPVATVPDLEA
+WWGGWG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000589.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000589.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3d9036d8e327a739b1adad7005d5208ba69f7104
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000589.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00893
+------------------------------------MHEDEGRRRHYGHFYGLEDLPEGD
+LLLVWGNCQGESYRRLLGGEPGTPLHGADLVSVRVPPAFEVQPDEVEHLERLLPRVKALV
+TQPIPHDYRGMPIGTDQLVARLPEDAAVVRIPVVYDVSRFPWQVTLRNWKFAPGAAERPG
+EDPPVVPYHDLRVLAEAA----------------------TGRRREVAPAAIREAAAASV
+QALRAREEAKGTLSMADLVAAERGVGFYTVNHPTNTVLTRVAERVAEHLPGDVAAQPVPA
+ARVLLGGVRAPLEAVVVEALDLDAEPTEDWTVGGETIPAEQLRQTHLDWYAQNPQAVEVG
+MRKYADQLRLLGLAA
+>KBS0714_MOLHKGIG_01966
+------------------------------------MHEDEGRRRHYGHFYGLEDLPEDD
+LLLVWGNCQGESYRRLLGGEPGTPLHGADLVSVRVPPAFEAQPDEVAHLERLLPRVKALV
+TQPIPHDYRGMPIGTDQLVARLPEDAAVVRIPVVYDVSRFPWQVTLRNWKFAPGAAERPG
+EDPPVVPYHDLRVLAEAA----------------------TGRRREVAPAAIREAAAASV
+QALRAREEAKGTLSMADLVAAERGVGFYTVNHPTNTLLTRVAERVAERLPGDVAVQPVPA
+SRVLLGGVRAPLEAPVVEALDLDAAPTEDWTVAGQTVPAEQLRQTHLDWYAQNPQAVEVG
+MRKYADQLRLLGLTG
+>KD337_NAFOICDF_00833
+MSEETPMDDQTRTAGAEPGDEGVQVRGAAERAPSSDLPADEGRRRHYAHFYGLEPLPEGE
+LLTVMGGCQAEATRLLLCGEPGRA-EGGTPASVRVPPMFELGPDDLPHLLALLKRTTVLV
+VKPVRDDYQGLPLGLGQLESLLPAGARSIRVPALYDSSRFPWLVTLRH-------PTRPW
+EDPPVVPYHDLRTVAEAAAEAGLIPWPAALGGPGEAGAYDAGPRLPLSAEALRGLAAESV
+ARLRAREEHFGTVRVSDAVADERGVGFHTVNHPDNPLLEALARTVLAELGVDKEVH--AP
+DRLLLGHVLAPIEEQVVDALGLQTAPRAAWRVGGAEVSDAEVRRAHLGWFRANPEALAPG
+LERHGALMRELGLLA
+>SA211_MHAAABBN_01660
+------------------------------------MNEDEGRRRHYGHFYGLEDLPEGD
+LLLVWGNCQGESYRRLLGGEPGTPLHGADLVSVRVPPAFEAQPDEVEHLERLLPRVKALV
+TQPIPHDYRGMPIGTDQLVARLPKDAAVVRIPVVYDVSRFPWQVTLRNWKVAPGAAERPG
+EDPPVLPYHDLRVLAEAA----------------------TGRRRQVAPAAIREAAAASV
+QALRAREEAKGTLSMADLVAAERGVGFYTVNHPTNTLLTRVAERVAGHLPGDVAVQPVPA
+SRVLLGGVRAPLEAVVVEALDLDAEPTEDWTVAGQTIPAEQLRQTHLDWYAQNPQAVEVG
+MRKYADQLRLLGLAA
+>TT9_LFPAFLNI_01892
+------------------------------------MNEDEGRRRHYGHFYGLEDLPEGD
+LLLVWGNCQGESYRRLLGGEPGTPLHGADLVSVRVPPAFEVQPDEVAHLERLLPRVKALV
+TQPIPHDYRGMPIGTDQLVARLPEDAAVVRIPVVYDVSRFPWQVTLRNWKFAPGAAERPG
+EDPPVVPYHDLRVLAEAA----------------------TGRRREVAPAAIREAAAASV
+QALRAREEAKGTLSMADLVAAERGVGFYTVNHPTNTLLTRVAERVAERLPGDVAVQPVPA
+SRVLLGGVRAPLEAVVVEALDLDAEPTEDWTVAGQTVPAEQLRQTHLDWYAQNPQAVEVG
+LRKYADQLRLLGLTG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000592.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000592.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6e970ab33d75978736e0264bdd615c4b4061c540
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000592.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_00906
+MV-AAREVTLQELLGGSYQ--YTVPLYQRTYSWGRPQWQRLWEDVVDVADHRRDNPSATHFIGSLV-LAGFRDNGPGGVQ
+RWLVVDGQQRLTTLTLLLAAVRDHRAEHEGPMHADRVNEKYLVNKWEDGDLRYKVLPTQ---ADRAAYRGRIEHA--PDA
+AE------GSRISEAHQFFLTKLFGLSQPSADGEEEQLTLAEVESAVVAGLSIVSVTTGENDNAHRIFESLNNTGLKLTQ
+GDLLRNYLFMQLPTRADEVYTTLWLPLQNLLSNEELETLFWLDLVQQDPKVRQTEIYAGQQRRMRGL----QDESQ----
+--VRAEVERFLALGRLYDVMLRPE-------KEKDAAVRFRLA----------------RLRAWRTTTTFPITLHLMERR
+SL-------------GDIDSDELARALLYLESYLVRR----LVFGRYSDGLNTTLLAATADIQGQDDPADAL-QRFLSSG
+RKHFASDDQIRQAVITAPFYTTGRAAHRKLILRWIEESYGSKEPVDLDSA-------TIEHVMPQ--TLTEEWERALAGQ
+LEAHQDLREVHTELLHTLGNLTLTGYNSELSNGPFAVKRAELA--------KSGIRMNQEISTVPVWGPAQIRARAERLA
+DRIVGIWPGPS----------AEAASGVAHTA--WQTLTDAVEAIPAGSWTSYGELARLIGSHPVPVGTYLARTAL-PHA
+HRVLQAGGTVSPSFRWTDVHRKDDPHDVLAAEGVRFSEDGRAYGGQRLVAEQLAELIDVDVDLTDPRSLAAPGNDPALRD
+RWVDRLHDHNDPESARALIEVQRGWVERGGRAEFADNAAGGCFLVVPRASARAIWPVILYPTYGVEVVFYHLAKWPPFTD
+EALLDDFRGRLNLIPGVEFGPEALRRRPSIRPQILQPAAAQEAFLDALEWFLHTIQEDDRSA
+>KBS0714_MOLHKGIG_01951
+MINSAEPRHVHELFSSQTKAHYVVPPYQREYSWHRAQWEALFADLVESEDE--------HFLGTIITLSRTKDSLSGPVL
+E--VIDGQQRLTTLTILLAAVHSHLQDAEDLDEDARFERMTLRRELVRDEAKAPRLTPQVQGANRADYQAMLADAGLPVK
+SEKKAYYPSRKVAKAFWFFRAAITELAEER--GESLSTTALSVLAAARRAL-IVNIEVASAADAFVLFESLNNRGVPLTP
+VDLIKNSFLARAEHRA----------------GMEVEEAFEL---WSDTLAHLGDSYATHERFLRHF----YNAFRGDLP
+PVKLAPVATRKNLIRIYETLLDQDLEGTVRSLERAAQVYGRIAGGGDVDEPTSLDQELTALRRAQAAPSYVLVMWLLVRQ
+EK-------------AGWSEEDLAAVARLLVSFFVRR----NLTGFPATYALPRLFMDVIDQVAAGEPDRLL-TIVRGSL
+VAASASDATFRER-LEGPVYEENRDVTRFLLATLAEDAMTKETRVDLWAQSGKTFVWTIEHILPQGENLPQEWVDALGGP
+EAA----AETQNRFVHTLGNLTITGFNSTLGNQTFLRKRDRIDHQGRAIGYRNGLALNAELAEKEAWSSADIEARTVRLV
+ERALE---------------------------------------------------------------------------
+----------------------------------RF--------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------AL
+>KD337_NAFOICDF_00292
+MS------------------------HERVYRIGSP--------------------------------------------
+------GAEPLVPVSFAEAGLRERQD----------------LQEWV---------------------------------
+-------------------------IAHPEILGEDIR---------------IV--------------------------
+--------------------------------------AFEFD--------RWEDADGGRQRDRLDVLGLDQSGCL----
+--VLAELKRDAAPD---TVEMQAI-------KYAAMASRFTEE----------------KLVAWHAA-----MLGRLENR
+PVSEEEAREALTDHAGELDVEQLRRPRIVLVAGAFTRSTTAAVVWLTEMGLDITLQRVQAYRMGGDDVVITVSQLFPVPD
+VEEFTVSPMRMESTARRTSSTRSPSTVRRLV-----------KAGTLPDG-------TVLTLVPT---------------
+-------TEVNAETREAIADW--------ISDDPRRGRATWWN--------DPTKPMEWELDGNR-YRPSRIVQQALREA
+TGITRSPRGPAWWVTESGMSLTELAGDVENGAFDWTQLHRLLCELPAGRWTTYGEVARLIGTAPQPLGGHFRTCTLCRNA
+YRVLDANGAVSSGFTWGDPQETRTQQEVLEAEGISF-DGGRAAPSQRLQPSELESVWKV---------------------
+--------------------------------------------------------------------------------
+---------------------------------------AQAAL----------------GE
+>KD337_NAFOICDF_00845
+MV-AAREVTLQELLGGSYQ--YTVPLYQRTYSWGRPQWQRLWEDVVDVADHRRDNPSATHFIGSLV-LAGFRDNGPGGVQ
+RWLVVDGQQRLTTLTLLLAAVRDHRAEHEGPMHADRVNEKYLVNKWEDGDLRYKVLPTQ---ADRAAYRGRIEHA--PDA
+AE------GSRISEAHQFFLTKLLGLSQPSAAGEEEPLTLAEVESAVVAGLSIVSVTTGENDNAHRIFESLNNTGLKLTQ
+GDLLRNYLFMQLPTRADEVYTTLWLPLQNLLSNEELETLFWLDLVQQDPKVRQTEIYAGQQRRMRDL----QDESQ----
+--VRAEVGRFLALGRLYDVMLRPE-------KEKDAAVRFRLA----------------RLRAWRTTTTFPITLHLMERR
+SL-------------GDIDSDELARAFLYLESYLVRR----LVFGRYSDGLNTTLLAATADVQGQDDPADAL-QRFLSTG
+RKHFASDDQIRQAVMTAPFYTTGRAAHRKLILRWIEESYGSKEPVDLDSA-------TIEHVMPQ--TLTEEWERALAGQ
+LEAHQDLREVHTELLHTLGNLTLTGYNSELSNGPFAVKRAELA--------KSGIRMNQEISAEPVWGPAQIRARAERLA
+DRIVDIWPGPS----------AEAASGVAHTA--WQTLTDAVEAIPAGSWTSYGELARLIGSHPVPVGTYLARTAL-PHA
+HRVLQAGGTVSPSFRWTDVHRTDDPHDVLAAEGVRFSEDGRADGGQRLVAEQLAELIDVDVDLIDPRSLAAPGNDPALRD
+RWVDRLHDHNDPESARALIEVQRGWVERGGRAEFADNAAGGCFLVVPRTSARAIWPVILYPTYGVEVVFYHLAKWPPFTD
+EALLDDFRGRLNLIPGLEFGPEALRRRPSIRPQTLQPAAAQEAFLDALEWFLHTVQEDDRSA
+>TT9_LFPAFLNI_01872
+MV-AAREVTLQELLGGSYQ--YTVPLYQRTYSWGRPQWQRLWEDVVDVADHRRDNPSATHFIGSLV-LAGFRDNGPGGVQ
+RWLVVDGQQRLTTLTLLLAAVRDHRAEHEGPMHADRVNEKYLVNKWEDGDLRYKVLPTQ---ADRGAYRGRIEHA--PDA
+AE------GSRISEAHQFFLTKLLGLSQPSADGEEEPLTLAEVESAVVAGLSIVSVTTGENDNAHRIFESLNNTGLKLTQ
+GDLLRNYLFMQLPTRADEVYTTLWLPLQNLLSNEELETLFWLDLVQQDPKIRQTEIYAGQQRRMRGL----QDESQ----
+--VRAEVERFLALGRLYDVMLRPE-------KEKDAAVRFRLA----------------RLRAWRTTTTFPITLHLMERR
+SL-------------GDIDSDELARALLYLESYLVRR----LVFGRYSDGLNTTLLAATADIQGQDDPADAL-QRFLSSG
+RKHFASDDQIRQAVMTAPFYTTGRAAHRKLILRWIEESYGSKEPVDLDSA-------TIEHVLPQ--TLTEEWERALAGQ
+LEAHQDLREVHTELLHTLGNLTLTGYNSELSNGPFAVKRAELA--------KSGIRMNQEISAEPVWGPAQIRARAERLA
+DRIVGIWPGPS----------AEAASGVAHTA--WQTLTDAVEAIPDGSWTSYGELARLIGSHPVPVGTYLARTAL-PHA
+HRVLQAGGTVSPSFRWSDVHRTDDPHDVLAAEGVRFSEDGRADGGQRLLAEQLAELIDVDVDLTDPRSLAAPGNDPALRD
+RWVDRLHDHNDPETARALIEVQRGWVERGGRAEFADNAAGGCFLVVPRTSARAIWPVILYPTYGVEVVFYHLAKWAPFTD
+ETLLDEFRGRLNLIPEVEFGPESLRRRPSIKPQTLQPAAAQEAFLDALEWFLRTVQEDDRTS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000596.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000596.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4d23f8b406675ef48d4e937bb270f26eba6a2a97
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000596.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00913
+M----TEQTSPAAPTADSPSPEDTIGRLFTRAAARHPETVALRFEDRDWTYAQLLDGVHRVARRLLATGLPRGTRVAAYG
+ANSDAYAVLFLACVTAGYVHVPVNFALKGGELAHALEDSGAEVLVADAGMLERVEQVRADGGGAGLRHVWTMLPAGHAEP
+SLLETARDEAADATAPDVPVTATDLAQLLYTSGTTSTPKGAMMSHRALITEYLSSIIALDFTAEDRPLVAMPLYHSAAMH
+VFLLPYLSLGATVRLLATPDIPRMLELVETEHIGSLFLAPTVWVPLANHPDLATRDLSSLRKAQYGASIMPVTVLQRLRQ
+SQPGIGFYNCFGQSELGPLCTVLRPEEHDARPASCGRPVFHVEARVMTADGAPAAPGEPGEIQYRSPQLLSGYWNRPDAT
+ADAFTDDGWFRSGDQVTQDAAGYIQVVDRIKDVINTGGVLVAPREVEDAIYELDEVAEVAVIGLPDERWIEAVTAVVVLK
+EGAELTAETVRTHVKERLAGFKVPKRVDFVAELPRNQSGKLLKRALRAERTQEAR
+>KBS0714_MOLHKGIG_01943
+MPDQITHPTDAAA--HPSPAPEDTIGRVFARAVARSPQAVALRFEDRDWTYTQLRDGAHRVARRLQDTGLPAGTRVAAYA
+TNSDAYALLFLACVTAGYVHVPVNFALKGGELAHALEDSGAELLVADAGMLERVDQVRAEGRASALRHVWTMLPAGHAEP
+SVLETARDETLDAAAPEAEVSATDLAQLLYTSGTTSTPKGAMMSHRALVAEYLSSMIALDFTAEDRPLVAMPLYHSAAMH
+VFLLPYLSLGATVRLLAAPDIPRMLELVETEHIGSLFLAPTVWVPLANHPDLATRDLSSLRKAQYGASIMPVTVLQRLRQ
+SQPGIGFYNCFGQSELGPLCTVLRPEEHDARPASCGRPVFHVEARVMTADGAPAAPGEPGEIQYRSPQLLSGYWNRPDAT
+ADAFTDDGWFRSGDQVTQDAAGYIQVVDRIKDVINTGGVLVAPREVEDAIYELDEVAEVAVVGLPDERWIEAVTAVVVLK
+EGAELTAETVRAHVKERLAGFKVPKRVDFVAELPRNQSGKLLKRALRAERTQEAR
+>KD337_NAFOICDF_00851
+MPDQITHPTDAAA--HLSPAPEDTIGRVFARAVARSPQAVALRFEDRDWTYAQLRDGAHRVARRLQGTGLPAGTRVAAYA
+TNSDAYALLFLACVTAGYVHVPVNFALKGGELAHALEDSGTELLVADAGMLERVDQVRAEGRASALRHVWTMLPAGHAEP
+SVLETAQDEALDAAAPEAEVSATDLAQLLYTSGTTSTPKGAMMSHRALVAEYLSSIIALDFTAEDRPLVAMPLYHSAAMH
+VFLLPYLSLGATVRLLAAPDIPRMLELVETEHIGSLFLAPTVWVPLANHPDLATRDLSSLRKAQYGASIMPVTVLQRLRQ
+SQPGIGFYNCFGQSELGPLCTVLRPEEHDARPASCGRPVFHVEARVMTADGVPAAPGMPGEIQYRSPQLLSGYWNRPDAT
+ADAFTDDGWFRSGDQVTQDAAGYIQVVDRIKDVINTGGVLVAPREVEDAIYELDEVAEVAVIGLPDERWIEAVTAVVVLK
+EGAELTAETVRTHVKERLAGFKVPKRVDFVAELPRNQSGKLLKRALRAERTQEAR
+>SA211_MHAAABBN_01639
+MPDQITHPTD-AG--HLSPAPEDTIGRVFARAVARSPQAVALRFEDRDWTYAQLRDGAHRVARRLQDTGLPAGTRVAAYA
+TNSDAYALLFLACVTAGYVHVPVNFALKGGELAHALEDSGAELLVADAGMLERVDQVRAEGRASALRHVWTMLPAGHAEP
+SVLETAQDETLDAAAPEAEVSATDLAQLLYTSGTTSTPKGAMMSHRALVAEYLSSIIALDFTAEDRPLVAMPLYHSAAMH
+VFLLPYLSLGATVRLLAAPDIPRMLELVETEHIGSLFLAPTVWVPLANHPDLATRDLSSLHKAQYGASIMPVTVLQRLRQ
+SQPGIGFYNCFGQSELGPLCTVLRPEEHDARPASCGRPVFHVEARVMTADGAPAAPGEPGEIQYRSPQLLSGYWNRPDAT
+ADAFTDDGWFRSGDQVTQDAAGYIQVVDRIKDVINTGGVLVAPREVEDAIYELDEVAEVAVIGLPDERWIEAVTAVVVLK
+EGAELTAETVRTHVKERLAGFKVPKRVDFVAELPRNQSGKLLKRALRAERTQEAR
+>TT9_LFPAFLNI_01862
+MPDQITHPTD-AG--HLSPAPEDTIGRVFARAVARSPQAVALRFEDRDWTYAQLRDGAHRVARRLQDTGLPAGTRVAAYA
+TNSDAYALLFLACVTAGYVHVPVNFALKGGELAHALEDSGAELLVADAGMLERVDQVRAEGRASALRHVWTMLPAGHAEP
+SVLQTAQDETLDAAAPEAEVSATDLAQLLYTSGTTSTPKGAMMSHRALVAEYLSSIIALDFTAEDRPLVAMPLYHSAAMH
+VFLLPYLSLGATVRLLAAPDIPRMLELVETEHIGSLFLAPTVWVPLANHPDLATRDLSSLHKAQYGASIMPVTVLQRLRQ
+SQPGIGFYNCFGQSELGPLCTVLRPEEHDARPASCGRPVFHVEARVMTADGAPAAPGEPGEIQYRSPQLLSGYWNRPDAT
+ADAFTDDGWFRSGDQVTQDAAGYIQVVDRIKDVINTGGVLVAPREVEDAIYELDEVAEVAVIGLPDERWIEAVTAVVVLK
+EGAELTAETVRAHVKERLAGFKVPKRVDFVAELPRNQSGKLLKRALRAERTQEAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000597.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000597.fa
new file mode 100644
index 0000000000000000000000000000000000000000..03af6744c79dea4134002b802f6a3eb0a6ad230a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000597.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00914
+MPEAYIIDAVRTPVGRRGKGLAQVHPLDLAAAPLREIVGRQDIDSAEYDEVILGCIDQLG
+PQAMDVARNAWLAAGLSEDVPGTTVERQCGSGQQAVHYAAQAVMSGTADLVVAGGVQSMS
+AIPLSHSNRAAAEFGFADPFTGSESWAARYGNEEISQFRGAEMMARHWNLDRDVLEEFAV
+RSHERALAAQADGRFDREILPLAGLTADEGPRTPDAAKIASLDPIVPGGLHTAATASQMS
+DGAAALLLASEEAVRRHGLTPRARIHHLSARGADPVMMLSAPIPATAYALDRMGLTIDDM
+DLVEINEAFAAVVLAWLTETGADPAKVNVNGGAIALGHPIGATGARLMTSLLHELERSGG
+RYGLQTMCEGGGQANVTVIERL
+>KBS0714_MOLHKGIG_01942
+MPEAYIIDAVRTPVGRRGKGLAGVHPLDLAAAPLRELVARQDIDSAEYDEVILGCIDQLG
+PQAMDVARNAWLAAGLSEDVPGTTVERQCGSGQQAVHYAAQAIMSGTADLVVAGGVQSMS
+AIPLSLSNTAARELGFPDPFTGSESWAARYGDEEISQFRGAEMMARHWNLDRDALEEFAV
+RSHERALAAQADSRFDREILPLAGLTADEGPRTPDAAKIASLDPIVPGGLHTAATASQMS
+DGAAALLLASEEAVRRHGLTPRARIHHLSARGADPVMMLSAPIPATAYALDRMGLTIDDM
+DLVEINEAFAAVVLAWLTETGADPAKVNVNGGAIALGHPIGATGARLMTSLLHELERSGG
+RYGLQTMCEGGGQANVTVIERL
+>KD337_NAFOICDF_00852
+MGEAYIIDAVRTPVGRRGKGLAGVHPLDLAAAPIRELVGRQDVDSAEYDEVILGCIDQLG
+PQAMDVARSAWLAAGLSEDVPGSTIERQCGSGQQAIHYAAQAVMSGTADLVVAGGVQSMS
+AIPLSRSNTAARELGFPDPFTGSESWAARYGDEEISQFRGAEMMARHWNLDRDALEEFAV
+RSHERALAAQADGRFDREILPLAGLTADEGPRTPDAAKIASLDPIVPGGLHTAASASQMS
+DGAAALLLASEEAVRRHGLTPRARIHHLSARGADPVMMLSAPIPATAFALRRMGLGIDDM
+DLVEINEAFAAVVLAWLTETGADPAKVNVNGGAIALGHPIGATGARLMTSLLHELERTGG
+RYGLQTMCEGGGQANVTVIERL
+>SA211_MHAAABBN_01638
+MPEAYIIDAVRTPVGRRGKGLAGVHPLDLAAAPLRELVGRQDIDSAEYDEVILGCIDQLG
+PQAMDVARNAWLAAGLSEDVPGTTVERQCGSGQQAVHYAAQAVMSGTADLVVAGGVQSMS
+AIPLSRSNTAARDLGFPDPFTGSESWAARYGSEEISQFRGAEMMARHWNLDRDALEEFAV
+RSHERALAAQADGRFDREILPLAGLTADEGPRTPDATKIASLDPIVPGGLHTAATASQMS
+DGAAALLLASEEAVRRHGLTPRARIHHLSARGADPVMMLSAPIPATAYALDRMGLTIDDM
+DLVEINEAFAAVVLAWLTETGADPAKVNVNGGAIALGHPIGATGARLMTSLLHELERTGG
+RYGLQTMCEGGGQANVTVIERL
+>TT9_LFPAFLNI_01861
+MPEAYIIDAVRTPVGRRGKGLAGVHPLDLAAAPLRELVGRQDIDSAEYDEVILGCIDQLG
+PQAMDVARNAWLAAGLSEDVPGTTVERQCGSGQQAVHYAAQAVMSGTADLVVAGGVQSMS
+AIPLSRSNTAARDLGFPDPFTGSESWAARYGSEEISQFRGAEMMARHWNLDRDALEEFAV
+RSHERALAAQADGRFDREILPLAGLTADEGPRTPDATKIASLDPIVPGGLHTAATASQMS
+DGAAALLLASEEAVRRHGLTPRARIHHLSARGADPVMMLSAPIPATAYALDRMGLTIDDM
+DLVEINEAFAAVVLAWLTETGADPAKVNVNGGAIALGHPIGATGARLMTSLLHELERTGG
+RYGLQTMCEGGGQANVTVIERL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000599.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000599.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bbfea48730ee56d872451021703ea6bc2d999160
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000599.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00921
+--------------------------------------------------------------------------------
+--------------------------------------------------MRVVAAPLAMLPGVDHGPALRMDLHPVPGG
+IVYVARDLVLRELGDDVRGHVHAGMVGTAQLHAFWSTVTVDLPPDRPVIVRLRSDRDAELLSLLEVLAPVEMRVVSYRLD
+ESPVGTQRSSYLLPDVDPEIVARAESPRVPLEAIEATQEEEDALRRSSGVFLSRRRTDRFLRRTLPTVTHSLSFSDEADV
+ADVYVDGSVLRSSRIGGAAAVGGPSMWAVQAVNGATTPLEVELEALVLGHVVSAWAGVPGERVTIHSDSRAALALLNAAR
+RERLTLGGARGERVRRTLRRLLAAVDLAQAADVRVETTWVKGHVGVQGNELADDLARAAARHAGVGTSEEDLRRRLDRLI
+DLHEEAEAEAGQTPARAVAAEGHRPMPPGRRPGPRL
+>KBS0714_MOLHKGIG_01938
+MGARINHPRTVVDRTLHHDVEPAHPAALVDVGWDFRGPGA----------------KAEEQHRPLRVVRARR-------P
+RGTP-RDRNGV----------------DLTRTGPVVPRPSPPRTRIRRDGVRVVASPLAMLPGVDHGPALRLDLHPTTGG
+IVYVARELELRELGDDVRGHVYTGMVGTAHLSVFWSTVTVDLPPERPVIVRLRSDRDAELLSLLEVLAPVDTRVVSYRLD
+ESPVGTQRSSYLLPDVDPETVAQTGAARIPLEAIEAAQEEEDALRRSSGVFLSRRRTDRFLRRNLPGVTHSLTFADEADV
+TDVYVDGSVLRGSRIGGAAAVAGPSMWAVQAVAGATMPLEVELEALVLGHVICAWAGTPGGRVTIHSDSRAALALLNAAR
+RERLTLGGARGERIRRTLRRLLAAVDLAQAADVQVDTTWVKGHVGVHGNELADDLARAAARHASVGTPEGDLPERMGQLI
+QLRVEDDAAG--------------------------
+>KD337_NAFOICDF_00855
+MDNSSTHPREGQVRSLHFDTDASSPDALLDPMWAFTGPRASRAGAPAPDGADVLARRARPAHPGAALVRAATSLFTLPGP
+PGMPHRSRSAALEAARAPAGYLSPVPHRLALPRPARPRPAPPRMRVRQDGVRVVARPLAMLPGVDHGRALRLDLHPVRDG
+IVFVSRHLELRELGDDVKGLVLTGVVPAARLGYFWDTVAGDLPEGRPVIVRLRSNDDAELLTLLRAIAPPWLRVVSYRLD
+ESPVGSQRSSYLLPDVDGEAVAASGAERVPLETLREAHQASAEVERASRVFLARRRVDRFVRRSVPDLMHSLSYTDPAEV
+RHVYVDGSVLRGTRTGGAAAVTRSGPWAAHALPGATIPLEAELEALTLGHLMAAWSGTPDERVLIHSDSRAALALLREAH
+RERLTLGDARGERIRRALRRLLAAVDLAGSAGVEVSTLWVKGHAGTHGNELADDLARSAARNTAAGVSADEMRRRMRHVV
+QLW---DATTH----------------------PQA
+>SA211_MHAAABBN_01634
+MGARINHPRTVVDRTLHHDVEPAHPAALVDVGWEFRGPGA----------------KAEEQHRPLRVVRARR-------P
+RGTP-RDRNGV----------------DLTRTGPVVPRPSPPRTRIRRDGVRVVASPLAMLPGVDHGPALRLDLHPTTGG
+IVYVARELELRELGDDVRGHVYTGMVGTAHLSAFWSTVTVDLPPERPVIVRLGSDRDAELLSLLEVLAPVDTRVVSYRLD
+ESPVGTQRSSYLLPDVDPETVAQTGAARIPLEAIEAAQEEEDALRRSSGVFLSRRRTDRFLRRNLPGVTHSLTFADEADV
+TDVYVDGSVLRGSRIGGAAAVAGPSMWAVQAVAGATMPLEVELEALVLGHVICAWAGTPGGRVTIHSDSRAALALLNAAR
+RERLTLGGARGERIRRTLRRLLAAVDLAQAADVQVDTTWVKGHVGVHGNELADDLARAAARHASVGTPEGDLPERMGQLI
+RLRVEDDAAAG-------------------------
+>TT9_LFPAFLNI_01857
+MGARINHPRTVVDRTLHHDVEPAHPAALVDVGWDFRGPGA----------------KAEEQHRPLRVVRARR-------P
+RGTP-RDRNGV----------------DLTRTGPVVPRPSPPRTRIRRDGVRVVASPLAMLPGVDHGPALRLDLHPTTGG
+IVYVARELELRELGDDVRGHVYTGMVGTAHLSVFWSTVTVDLPPERPVIVRLRSDRDAELLSLLEVLAPVDTRVVSYRLD
+ESPVGTQRSSYLLPDVDPETVAQTGAARIPLEAIEAAQEEEDALRRSSGVFLSRRRTDRFLRRNLPGVTHSLTFADEADV
+TDVYVDGSVLRGSRIGGAAAVAGPSMWAVQAVAGATMPLEVELEALVLGHVICAWAGTPGGRVTIHSDSRAALALLNAAR
+RERLTLGGARGERIRRTLRRLLAAVDLAQAADVQVDTTWVKGHVGVHGNELADDLARAAARHASVGTPEGDLPERMGQLI
+QLRVEDDAAG--------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000600.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000600.fa
new file mode 100644
index 0000000000000000000000000000000000000000..078c1c4d0c5b1e8a56272b16288b2d10b70708be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000600.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00922
+MSSPPRAGSSRGRLSATDVVDAAVGILQDFGMGDLSMRRVASVLGVQASALYWHVPDKQT
+LLARVADRIVAEAEEAVRHRGIADLAGRAEAAEAALLRHRDGADVVLSALALGLGGLGLH
+ALLTEAAPTPEEGERALALLLGGVSLRQQRAQAEALGVRVGPDVQRHRTDPL
+>KBS0714_MOLHKGIG_01937
+M-TPP---APRPRLTAQDVVDAAVGILQDFGMGDLSMRRVAGVLGVQASALYWHVPDKQS
+LLARVADRIVAEAEETVRARRVTDLAGRAEAAEAALLRHRDGADVVLSALALGLGGLGLH
+RLLTEAADTPEDGERALALLLGTVSLRQQRAQAQALGVATGPDVQRHRTDPL
+>KD337_NAFOICDF_00856
+M-STS---SARGRLSAEDVVDAAVGILQDFGMGDLSMRRVASMLGVQASALYWHVPDKQT
+LLARVADRIVADVERACAARRVEDLAGRAEEAEAVLLRHRDGADVVLSALALGLGGLGLH
+RLLVDAAHTPEEGERALAALLGTAALRQQRNQAAALGLRLGPDVQARRTGAL
+>SA211_MHAAABBN_01633
+M-TPP---APRPRLTAQDVVDAAVGILQDFGMGDLSMRRVAAVLGVQASALYWHVPDKQS
+LLARVADRIVAEAEETVRARRITDLAGRAEAAEAALLRHRDGADLVLSALALGLGGLGLH
+RLLTEAADTPEDGERALALLLGTVSLRQQRAQAQALGVPTGPDVQRHRTDPL
+>TT9_LFPAFLNI_01856
+M-TPP---APRPRLTAQDVVDAAVGILQDFGMGDLSMRRVAGVLGVQASALYWHVPDKQS
+LLARVADRIVAEAEETVRARRVTDLAGRAEAAEAALLRHRDGADVVLSALALGLGGLGLH
+RLLTEAADTPEDGERALALLLGTVSLRQQRAQAQALGVATGPDVQRHRTDPL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000602.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000602.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4f3de59d092811ec882ec44833a21cee6851d674
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000602.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00924
+MDGPARGGGLLTVGLTSVPAPVGGPGAPPGAPGPAASGGRRRRRTAGGDGIGAWWLLAAVVPVAFLLVFFAWPVGAMLWR
+GVSA-------EGVLDLGAFAEVLGRERTWRIVGQTLGMAAAGTVLAVALGLPAAFVLHRRAFPGRAALRAVITVPFVLP
+TVVVGVAFRALLAPGGPFGWTGLDQSTAAVVLAMVFFNVSVVVRQVGALWASLDPRQAEAARTLGSSGWRAFRTVTLPQL
+APALASSAALVFLFCASAFGIVQTLGRPGVGTLESEIWVQTVVYFDLGTAAVFSTLQFLVVLAAVLVSGATARRTRRALR
+LRDAPVRRLTRADAAPVAVTLATALLVLAPLATLLVRSFHSSEGWGLRNYRLLASSPGAGFSGGVTPAQALEHSLRIALD
+ATLLTLLIGVPLALLLTRPVRSAAGRRAQRGLDGALLLPLGVSAVTVGFGFVVSLRAEAPALAASGALVPIAQAVVALPL
+VVRSLVPVLGAVDPRLREAARTLGAGPLRVLATVDGPFLLRGLGVAAGFAFAVSLGEFGATSFLSSPDYQTLPLLIVKLL
+GRPGADNYGMALAAATVLAVLSAGTMMACERLGPRAAASRGGI
+>KBS0714_MOLHKGIG_01935
+M---------------SALTEV----AAPGTDLP------RRRARGRGDGLGPWWLVAAVLPVAFLLVFFAWPVAAMLWR
+GIGG--DADAFTGAVDLTAFGETLARERTWRILGQTLGMAAAGTVVSVALGLPTAFVLHRRRVPGRAVLRALVLVPFVLP
+TVVVGVAFRALLAPGGPLGFTGLDQTTTAVVLAMVFFNVSVVVRQVGALWNALDPRQTEAARTLGASPWRAFRTVTLPQL
+APAIAASAALVFLFCASAFGIVQTLGRPGYGTLESEIWVQTSVYLDLRTAAVFSVLQFAVVLVAVVVSGVTAARTQRALR
+LRETPPARLTRADAVPVAVMLAVVALVVAPILTLVVRSFHTRHGWGLGNYRLLSTSAGSGFVGGSTPARALEQSLRVAVD
+ATLVTLVVAVPLALLLTRPFRSRAALAAQRALDGALLLPLGVSAVTVGFGFVVSLRAAFPELAASGVLVPLAQAVVALPL
+AVRALVPVLAAVDPRLREAARTLGAGPWRVLATVDGPFLARGVGVAAGFAFAVSLGEFGATSFLASPSAPTLPVLIARLL
+GRPGADNYGMALAAATVLAVLSAGIMLVCERLRPRGPAGAGGL
+>KD337_NAFOICDF_00858
+M---------------PTPAPA--RGRRRATLRP------PRGRRAAGDGLAPLWLLSAAVPVAFLLVLFAWPVAAMLWR
+GVASVDAAGDPTGGLDLSAFAQTLGAPRTWRILGNTLGLAAAGTAASVALGVPTAFALHRRAFPGRGLARAVVTVPFVLP
+TVVVGAAFRALLAADGPLGWTGLDQTSTAVVMAMVFFNVSVVVRQVGGLWAALDPRQAEAARTLGASPWRAFRTVTLPQL
+APAVAGAAALVFLFCASAFGIVQTLGRPGPGTLETEIWAQTTVYLDLRTAAVLSTVQLAVVLAAILASGAAAARARRALR
+LGEAPARPLTRADAVPAAVTLAVLALVVAPILALLAGSLHSAEGWGLRNYRLLATSPGTGFAGGVTPAQALEQSLRTAVD
+ATVVTLVVAVPLALVLTRPVRSRAGRAAQRALDGALLLPLGVSAVTVGFGFIVSLRATAPDLAASGALVPLAQSVIAVPL
+AVRALVPVLGAVDPRLREAARTLGAGPWRVLATVDGPFLARGVGVAAGFAFAVSLGEFGATSFLAAADRPTLPVLIARLI
+GRPGADNHGMALAAAVVLAVLSAGALLACERLRPRGAAPSGGL
+>SA211_MHAAABBN_01631
+M---------------SALTEV----AAPGTDLP------RRRARGRGDGLGPWWLVAAVLPVAFLLVFFAWPVAAMLWR
+GIGG--DADAFTGAVDLTAFGQTLARERTWRILGQTLGMAAAGTVVSVALGLPTAFVLHRRRVPGRAVLRALVLVPFVLP
+TVVVGVAFRALLAPGGPLGFTGLDQTTTAVVLAMVFFNVSVVVRQVGALWNALDPRQTEAARTLGASPWRAFRTVTLPQL
+APAIAASAALVFLFCASAFGIVQTLGRPGYGTLESEIWVQTSVYLDLRTAAVFSVLQFAVVLAAVVVSGVTAARTQRALR
+LRETPPARLTRADAVPVAVMLAVVALVVAPILTLVVRSFHTRHGWGLGNYRLLSTSAGSGFVGGSTPAQALEQSLRVAVD
+ATLVTLVVAVPLALLLTRPFRSRAALAAQRALDGALLLPLGVSAVTVGFGFVVSLRAAFPELAASGVLVPLAQAVVALPL
+AVRALVPVLAAVDPRLREAARTLGAGPWRVLATVDGPFLARGVGVAAGFAFAVSLGEFGATSFLASPSAPTLPVLIARLL
+GRPGADNYGMALAAATVLAVLSAGIMLVCERLRPRGPAGAGGL
+>TT9_LFPAFLNI_01854
+M---------------SALTEV----AAPGTDLP------RRRARGRGDGLGPWWLVAAVLPVAFLLVFFAWPVAAMLWR
+GIGG--DADAFTGAVDLTAFRETLARERTWRILGQTLGMAAAGTVVSVALGLPTAFVLHRRRVPGRAVLRALVLVPFVLP
+TVVVGVAFRALLAPGGPLGFTGLDQTTTAVVLAMVFFNVSVVVRQVGALWNALDPRQTEAARTLGASPWRAFRTVTLPQL
+APAIAASAALVFLFCASAFGIVQTLGRPGYGTLESEIWVQTSVYLDLRTAAVFSVLQFAVVLAAVVVSGVTAARTQRALR
+LRETPPARLTRADAVPVAVMLAVVALVVAPILTLVVRSFHTRHGWGLGNYRLLSTSAGSGFVGGSTPAQALEQSLRVAVD
+ATLVTLVVAVPLALLLTRPFRSRAALVAQRALDGALLLPLGVSAVTVGFGFVVSLRAAFPELAASGVLVPLAQAVVALPL
+AVRALVPVLAAVDPRLREAARTLGAGPWRVLATVDGPFLARGVGVAAGFAFAVSLGEFGATSFLASPSAPTLPVLIARLL
+GRPGADNYGMALAAATVLAVLSAGIMLVCERLRPRGPAGAGGL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000603.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000603.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d78da0c4984eb7973f7b182682bf8aa98ec2e0c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000603.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00925
+MTTAPHRVRTRPRRHGALAALSVAALALTGCSVA--DRGGSGDQGSSSA-----------
+----------EARTVTIMTHDSFSLPDELIARFEQESGHTLVTTAPGDAGSVVNQLLLAK
+DAPTVDGVYGIEDHSAHRLVSEGVIAEHVPADLPDSARDLVVDGRMTPVDQGQVCLNVDT
+PWFQEQGLAAPTTLEQVAAPEYAELTVVTSPVSSSPGLALLAATVAEFGEDGWQDWWRTA
+LQGGMQVDASWSDAYNTSFSGGEGTGTRPIVLSYSSSPAFAPDTDVVAASCTPQVEYAGV
+VEGAENPEGARAFVDFLLTEDVQAAIPDAMYMYPVDSSVPLPEAWAEHAPLVEDPIVPDA
+GLLDSRREDLLKEWTALHEEAAS-
+>KBS0714_MOLHKGIG_01934
+MSRTPHR---------ALAALSVAALALTGCSVS----GSSGDGASSSAA----------
+-----GA-GGEPTTVTIMTHDSFNLPQELVQKFEQESGYTLKTTAPGDAGSVVNQLLLAK
+DEPTVDGVYGVEDHSAHRLVREGVVAEYTPQDLPASAQDRMVEDRMTPVDQGQVCFNTDP
+AWFEAHDVEAPTSIDQLDDPEYAKLTVATSPVASSPGLALLAATTEKYGDDGWQDWWRGL
+KENGGKVADSWSDAYNSDFSGGEGKGRFPVVLSYSSSPAFAPETEVIEDSCTPQVEYAGV
+LEGAKNPEGAQAFVDFMLTEEVQSALPESMYMYPIDESVQLPEEWAQNAPLVEDAITPDP
+ARIDERREDLLKEWTALAEASRR-
+>KD337_NAFOICDF_00859
+MSV--HR--TATTRRGVLAAACLSALALTGCSVSAPSTGSSSSAASSSAAPSSASGSSST
+SASGTAA-AGSKGTVTIMTHDSFALPKELIAQFEAESGYRLVTTAPGDAGAVVSQVLLSK
+DAPVADGVYGVENHSAHRLVDQGAVQDVAPADLPASAEDLVVDGKMIPVDQGQVCFNTDP
+AWFTEHGVAEPTSIDQLRDPEYAKLTAVTSPVTSSPGLALLAATTEKYGDDGWQGWWEDL
+LKGGAKVDSTWSDAYSTDFSGGEGKGEFPVVLSYSSSPAFAPQTAVIEDSCTPQVEYAGV
+LTGAENPEGAKAFVEFLLSKDVQAAIPENMYMYPVDDTVELPAEWAANGPLVEDPITPDP
+AEIDTEREGLLKEWTALSESAGSR
+>SA211_MHAAABBN_01630
+MSRTPHR---------ALAALSVAALALTGCSVS----GSSGDGASSSAS----------
+-----GAGGGEPTTVTIMTHDSFNLPQELVQKFEQESGYTLKTTAPGDAGSVVNQLLLAK
+DEPTVDGVYGVEDHSAHRLVREGVVAEYTPQDLPASAQDRMVEDRMTPVDQGQVCFNTDP
+AWFEAHDVEAPTSIDQLDDPEYAKLTVATSPVASSPGLALLAATTEKYGDDGWQDWWRGL
+MENGGKVADSWSDAYNSDFSGGEGKGRFPVVLSYSSSPAFAPETEVIEDSCTPQVEYAGV
+LEGAKNPEGAQAFVDFMLTEEVQSALPESMYMYPIDESVQLPEEWAQNAPLVEDAITPDP
+ARIDERREDLLKEWTALAEASRR-
+>TT9_LFPAFLNI_01853
+MSRTPHR---------ALAALSVAALALTGCSVS----GSSGDGASSSAA----------
+-----GA-GGEPTTVTIMTHDSFNLPQELVQKFEQESGYTLKTTAPGDAGSVVNQLLLAK
+DEPTVDGVYGVEDHSAHRLVREGVVAEYTPQDLPASAQDRMVEDRMTPVDQGQVCFNTDP
+AWFEAHDVEAPTSIDQLDDPEYAKLTVATSPVASSPGLALLAATTEKYGDDGWQDWWQGL
+MENGGKIADSWSDAYNSDFSGGEGKGQFPVVLSYSSSPAFAPETEVIEDSCTPQVEYAGV
+LEGAKNPEGAQAFVDFLLTEEVQSALPESMYMYPIDESVQLPEEWAQNAPLVEDAITPDP
+ARIDERREDLLKEWTALAEASRR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000605.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000605.fa
new file mode 100644
index 0000000000000000000000000000000000000000..32ff06b05e7ebe9211f31cd296317d6b955853a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000605.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00927
+MPA-AETVPADAAGRPDARPRVPGPREQPERAWLALPRRHPVPALLDEARDAVAGLAETL
+AEVLPVTVLTDPADHAVRSLIPPEVDLLAAPVDSPLLGRTGPGFVRRP---EGLAAIAWR
+PAAGAGGPGPRDAGVAAAVAAAAGLPLLTPMLRAPRDAWVADGEGTAVVAADPVLDGRTN
+PAWTPEQVEAEFAALLGITRVAWLPPVPRIPTGPWGGAG----HLGAWVRLLGGGEAAVH
+WRADRFHPEHLHGAAALRILQDAPDAAGRPLRVRTVPGGALPPEHDPAEIGPRSLVDTVP
+LG-SAVLRPAFEDAATEEAAAAACAALHPGLRPVPFPGPPLLRLAGSLSDLVLVQP----
+----------------HP
+>KBS0714_MOLHKGIG_01932
+MAA-VDPAPTDARERRDLVVPVPGPEDPPERAWLVLPHRHPVPTLLEETRDAVVGLAETL
+AAVLPVTVLAHPRDAGAARLVPPEVDLLRAPVGSPLLGRTGPSFVRRP---EGLAAVAWR
+SAAGLTGTGPLDGAAATAVAEAAGLPLLTPLLCAPRGAWVSDGEGTAVVAADPVLDGRIN
+GAWTPGQVAAEFAALLGITRVLWVPPAPRPDTGPWGGPG----HLASWVRLQGDGEAAVH
+WRGDRFNPEHPYAAAALRFLQGADDAAGRPLRVRTVTGAAQPAEYDPAERGPRSLLDTLP
+LG-AAVLRPAFEDAAGEEAAAAACAALHPGRPQLSFPAPPLLRLAGALNDLVLLQP----
+----------------RP
+>KD337_NAFOICDF_00861
+MSTPAVPEP----------PRAPAPWEVPERLWLALPAVHPVPGLLAEARDAVAGLAETL
+GAHAPVAVLTDPDDADAARLLPGVVERVPVRGASPLPGREGPTFVHAAGTRGSVEAVHWR
+LPSDAAGTAGRAAATADAVARSAGLPLRTPLFSAPAGTWAADGDGTAVVSA-ALLDPAVN
+EGWTRAQAEDALAGLLGAERVLWLPPVAGHAAGPWDGGGAAQPHPHPWLRFVAPGEVAVH
+WQPGRLHPDHAASAAALHALTGARDARGRALSVRTVRALPPGPDADLEARGPLSALDLLP
+LAPGVVLRPAHADPEADAATAEAAAALFPGAEQVPFPGPPLLRLLGTLSDLVLPQPPGAR
+TRRPSPAPAHPEGPRAAP
+>SA211_MHAAABBN_01628
+MAA-VDPAPTDARERRDVVVPVPGPEDPPERAWLVLPHRHPVPTLLDETRDAVVGLAETL
+AAVLPVTVLAHPRDAGAARLVPPEVDLLRAPVGSPLLGRTGPSFIRRP---EGLAAVAWR
+SAAGLTGTGPLDGAAATAVAEAAGLPLLTPLLCAPRGAWVSDGEGTAVVAADPVLDGRIN
+GAWTPGQVAAEFAALLGITRVLWVPPAPRPGTGPWGGPG----HLASWVRLRGDGEAAVH
+WRGDRFHPEHPYAAAALRFLQGADDAAGRPLRVRTVTGAAQPAAYDPAERGPRSLLDTLP
+LG-AAVLRPAFEDAAGEEAAAAACAALHPGLPQLSFPAPPLLRLAGALNDLVLLQP----
+----------------RP
+>TT9_LFPAFLNI_01851
+MAA-ADPVPTDARERRDVVVPVPGPEDPPERAWLVLPHRHPVPTLLDETRDAVVGLAETL
+AAVLPVTVLAHPRDAGAARLVPPEVDLLRAPVGSPLLGRTGPSFIRRP---EGLAAVAWR
+SAAGLTGTGPLDGAAATAVAEAAGLPLLTPLLCAPRGAWVTDGEGTAVVAADPVLDGRIN
+GAWTPGQVAAEFAALLGITRVLWVPPAPRPGTGPWGGPG----HLASWVRLRGDGEAAVH
+WRGDRFHPEHPYAAAALRFLQGADDAAGRPLRVRTVTGAVQPAEYDPAERGPRSLLDTLP
+LG-AAVLRPAFEDAAGEEAAAAACAALHPGLAQLSFPAPPLLRLAGALNDLVLLQP----
+----------------RP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000606.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000606.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2bd5d5338ae363eca13aeb9415330ab2f27d3be0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000606.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00928
+-MHLIPRTLWVLARARRRPPLSIWDSASLPMRALPTDVDIAGHVNNGQYFGLFDLGRFDL
+MARSGLMRAVRRRGWLPVVQAEQIAFRRSVTLGTAFTLETRIIGLDERAVWFEQRVVVAG
+DVAVRGYVCTRLRGRDGTPVGNDEVRALAVELGHDPAAEPELPGWLHDWREQVALPSART
+PLPHAWGR------
+>KBS0714_MOLHKGIG_01930
+-MHLIPRTIWVVARARRRPRAGLWEPTTLPMRALPTDVDMALHVNNGQYFGLFDLGRFDA
+MVRTGLWDEIRRRGWTPVVQAEQIAFRRSVTLGQRFDVETRMIGLDERAVWFEQRVVVDG
+DVAVRAYICTRLRKKDGRPVENDEVRAIAAAAGHDLAGEPTLPEWLHEWRRSVALPSART
+PLPHTWDLDTVRRG
+>KD337_NAFOICDF_00862
+MLHLLPRTALVVVRARRRPRLGIWEASTLPLRALPTDVDFAGHINNGQYFGLFDLGRFDL
+MVRAGVWDGAKRRGWLPVVQAEQIAFRRSVTLGTRFTVESRIIGLDERAVWFEQRAVVDG
+DVAVRAFICTRLRAKDGTPVSNEDVRDLARELGHDLAAEPVLPEWLHGWRSDIALPSART
+PLPHAWGTPAPAGV
+>SA211_MHAAABBN_01626
+-MHLIPRTIWVVARARRRPRAGLWEPTTLPMRALPTDVDMALHVNNGQYFGLFDLGRFDA
+MVRTGLWDEIRRRGWTPVVQAEQIAFRRSVTLGQRFDVETRMIGLDERAVWFEQRVVVDG
+DVAVRAYICTRLRKKDGRPVENDEVRAIAAAAGHDLAGEPTLPEWLHEWRRSVALPSART
+PLPHTWDLDTVRRG
+>TT9_LFPAFLNI_01849
+-MHLIPRTIWVVARARRRPRAGLWEPTTLPMRALPTDVDMALHVNNGQYFGLFDLGRFDA
+MVRTGLWDEIRRRHWTPVVQAEQIAFRRSVTLGQRFDVETRMIGLDERAVWFEQRVVVDG
+DVAVRAYICTRLRKKDGRPVENDEVRAIAAAAGHDLAGEPTLPEWLHEWRRSVALPSART
+PLPHTWDLDTVRRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000607.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000607.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7403a7f593ebe7553eeabda325f6e841451134c6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000607.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_00930
+MNNRLLIVATLSLGALVVVLVAAIGNGAWWVLAAIVVGLLI--LAVRDMTQKRHAILRNFPVLGHMRYLLESIRPEIQQY
+FIERNFDGKPFDRDTRSLVYARSKGLDSHKAFGTERDTSEIGYEFLLHSS----AP-----VNAPAEAPTVRI-GGPDCR
+QPV--DISLMNISSMSFGSLSANAVQAMNKGAGLGGFIHETGEGGLTKYHRGNGADLFWEIGSGYFGCRNGDGTFSAEKF
+AAKAALPEVKGITIKMSQGAKPGLGGMLPKEKITAEIAEAREIPMDQDCLSPASHSAFRTPREMVRFIGHLRELSDGKPV
+GIKFCVGSRVDVLAMCKAIWEERIAPDFIIVDGSEGGTGAAPLEYSDRVGTPLTEGLMLVHNALVGTGLRHMIKLGAAGK
+VATGSDIVKRLIQGADFTMSARAMMMATGCIQAQKCHTNECPVGVATQDPRLMRALDVTDKSNRVFNYHRLTVREAVQIM
+ASMGVTHPSQLNTRMLRRRVDHLATRSYASIYHWLRTDELLNDPPAGWAMDWDEADG-------DHFGEHARVDYLTERD
+PEWRSELLIPGRQEQGAPVQGSPASGAGSRVAVGDSRDTAPVTTSPLPRVSTLAEGETLYSRSTRSHDPAREQAGVTQ-R
+VDTDGNDGLSPHAGEDPERQDGEEVTQRGTTGRVDAEPRGEGRVG
+>KBS0714_MOLHKGIG_01929
+MNNRLLIVATLSLAALVVVLVAAIGGGAWWVLAVLLVALLV--LAVWDMTQKRHAILRNYPVLGHMRYLLESIRPEIQQY
+FIERNFDGKPFDRDTRSIVYARAKGLDSHKAFGTERDTSEIGYEFLLHST----AP-----VNPPEEPPTVRI-GGPDCR
+RPV--DISLMNISSMSFGSLSANAVIAMNKGAGLGGFIHETGEGGLTKYHRGNGADLFWEIGSGYFGCRNEDGTFSPEKF
+AEKAVLPEVKGITIKISQGAKPGLGGMLPKEKISPEIAEAREIPMDKDCLSPASHSAFRTPREMVKFIEQLRELSDGKPI
+GIKFCVGSRVDVLAMTKAIWEERIAPDFIIVDGSEGGTGAAPLEYSDRVGTPLTEGLMLVHNALVGTGLRHMIKLGAAGK
+VATGSDIVKRLIQGADFTMSARAMMMATGCIQAQKCHTNECPVGVATQDPRLMRALDVEDKGNRVFNYHRLTVREAVQIM
+ASMGLTHPSQLNTRMLRRRVDHLSTRSYASIYHWLRTDELLNDPPAGWAMDWEEADA-------DHFGEHARVDYLTERD
+PQWRSELLIPGREAAGAPVQGSPISGTGSTLVDARRTESVPLTTSPMPRVSSLGEGESLCTPGGRRRAPQDPAPAATAGE
+TPTDENEGLPAEAGERPERQDGEEVTRRGTTGRVEGEHRGEGRVG
+>KD337_NAFOICDF_01592
+MNSK--------------------------TLAAAAAALGVAGVAVRDLTQKQHALRHNFPVLARARWALETIGPELRQY
+IVAANNEERPFSRDQRRWVYTSSKGKNNYYGFGTDNDVEHTSYAVVKHRTFSDVAPMSALALDPGKALPSAKVLGGPRGR
+RHAFRPNSVVNVSAMSFGSLSPQAITALNKGAALGGFMHNTGEGGLSDHHR-QGGDLMLQIGTGYFGCRDAHGNFDMEKL
+AAVVESAPVRALEIKLSQGAKPGLGGHLPGAKVNAEIARIRGVEEGKDVASPSRHSEFSTVDEMLDFVERVAERT-GLPV
+GIKSAVGDLGFWHELADAMADGTRGVDFITIDGGEGGTGAAPLIFSDSVAFPFRVAFTEVYRIFAARGLTDRVTWIGSGK
+LGLPDNALVAFALGVDMVNVAREAMLAIGCIQAQKCHLDTCPAGVATQNPWLAAGLDPQEKSQRLVGYVQTLRRDLIKVS
+EAAGVPHPALLSPDDVALVEQTRSQTPLREIYGYER----------GWGVPGEEIRAEITRIMVDEDSSRADEDHLVQHE
+P---------------------------------------------LP--------------------------------
+-------------------QDDVDTTH------------------
+>SA211_MHAAABBN_01625
+MNNRLLIVATLSLAALVVVLVAAIGGGAWWVLAVLLVALLV--LAVWDMTQKRHAILRNYPVLGHMRYLLESIRPEIQQY
+FIERNFDGKPFDRDTRSIVYARAKGLDSHKAFGTERDTSEIGYEFLLHST----AP-----VNPPEEPPTVRI-GGPDCR
+QPV--DISLMNISSMSFGSLSANAVVAMNKGAGLGGFIHETGEGGLTKYHRGNGADLFWEIGSGYFGCRNEDGTFSPEKF
+AEKAVLPEVKGITIKISQGAKPGLGGMLPKEKISPEIAEAREIPMDKDCLSPASHSAFRTPREMVKFIEQLRELSDGKPI
+GIKFCVGSRVDVLAMTKAIWEERIAPDFIIVDGSEGGTGAAPLEYSDRVGTPLTEGLMLVHNALVGTGLRHMIKLGAAGK
+VATGSDIVRRLIQGADFTMSARAMMMATGCIQAQKCHTNECPVGVATQDPRLMRALDVEDKGNRVFNYHRLTVREAVQIM
+ASMGLTHPSQLNTRMLRRRVDHLSTRSYASIYHWLRTDELLNDPPAGWAMDWEEADA-------DHFGEHARVDYLTERD
+PEWRSELLIPGREAGGAPVQGSPISGTGSTLVDARQTESVPLTTSPMPRVSSLGEGESLSPHGGRRRAPQDPAPAATAGE
+TPTDENEGLPAEAGERPERQDGEEVTQRGTTGRVEGEHRGEGRVG
+>TT9_LFPAFLNI_01848
+MNNRLLIVATLSLAALVVVLVAAIGGGAWWVLAVLLVALLV--LAVWDMTQKRHAILRNYPVLGHMRYLLESIRPEIQQY
+FIERNFDGKPFDRDTRSIVYARAKGLDSHKAFGTERDTSEIGYEFLLHST----AP-----VNPPEEPPTVRI-GGPDCR
+RPV--DISLMNISSMSFGSLSANAVIAMNKGAGLGGFIHETGEGGLTKYHRGNGADLFWEIGSGYFGCRNEDGTFSPEKF
+AEKALLPEVKGITIKISQGAKPGLGGMLPKEKISPEIAEAREIPMDKDCLSPASHSAFRTPREMVKFIEQLRELSDGKPI
+GIKFCVGSRVDVLAMTKAIWEERIAPDFIIVDGSEGGTGAAPLEYSDRVGTPLTEGLMLVHNALVGTGLRHMIKLGAAGK
+VATGSDIVKRLIQGADFTMSARAMMMATGCIQAQKCHTNECPVGVATQDPRLMRALDVEDKGNRVFNYHRLTVREAVQIM
+ASMGLTHPSQLNTRMLRRRVDHLSTRSYASIYHWLRTDELLNDPPAGWAMDWEEADA-------DHFGEHARVDYLTERD
+PQWRSELLIPGRAAAGAPVQGSPISGTGSTLVDARQTESVPLTTSPMPRVSSLGEGESLSPHGGRRRAPQDPAPAATAGE
+TPTDENEGLPAEAGERPERQDGEEVTQRGTTGRVEGEHRGEGRVG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000608.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000608.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3f8aefd1c1fca75a5a840622e7071b6f3050c4a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000608.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00931
+M-----------------------------TPPSSAPAAARSGPSTALLWVLLAAMGAGP
+LFNYGISASSTVIIERLGVTSGQLGTVMTAVFAAAAVTSLGLGRAADRLSSRAQMSIIFG
+GTAVALVMGAFAPSLPVLYAAAAVAGVTQAISNPTTNRIIRTVVPPERRIGWIGVKQSGV
+QAAQLFGGLFFPAASLALGWTGAALVVAVLACVLWGFALWAAPPLPGTA--PTADPDAGR
+ASAPDVDRASAPDAGPAAARARRRDGRRR--RGTTALPASVWFFAAIAFLTGLGMQATNM
+YLPLFAVESLDLTLVAGGAAAAVSGVIGVFSRIWWSRRMAVGARPTTLLAAICLGALAGV
+VVLLAADLAHLPALLWVGAAVHGLTVLGANVVTNAGLMSEVPAESLGRASGANAMGMYAG
+FALGPLVMGVLRDLTGDYRAGFAAVGLGYILAFLVVLLLRRHVGRRAADPRAEAA
+>KBS0714_MOLHKGIG_01928
+M-----------------------------TLP--APAARR--PSAALLWVLLAAMGAGP
+LFTYGVSASSTVVMERLDVTSGQLGTVMTVVFAAAAVTSLGLGRAADRLSARAQLSIIFG
+GTAAALVLGAVAPSLPVLYAAAAVAGVTQAISNPTTNRIIRTVVPPERRIGWVGVKQSGV
+QAAQLVGGLFFPAASLALGWTGAALGAAVLIGALWVLALVAAPPLPGAP--P--------
+-----------SATGPAG-------GRRR--RDTSPLPATVWFSAAIAFLTGLGMQATNT
+YLPLFAVETLGMTLVAGGAAAAVSGVVGVLSRIGWSRRMSSGDRPTTLLTVICLGAVAGV
+VVFLAADLLDLPALLWVGAAVHGLTVLGANVVVNAGLLSEVPAERLGRATGANSMGMYAG
+FALGPLLMGVLRDVTGDYRAGFAVVALGYLLALGVVLLLRRHVGRRGA------A
+>KD337_NAFOICDF_00863
+MGDAGAGRRLTGSSGGPAAPGGPTLGAVTASPPS-RPADRA--PGTLLLWTLLAAMGAGP
+VFNYAVSTSSTVIIERLGVTSGQLGTVMTVVFAAAAVTSVGLGRAADRLSSRTQMAIIFF
+GSALALAVGGFAGSLWALYGAAVLAGVTQTISNPTTNRIIRTSVPAERRIGWIGVKQSGV
+QASQLFAGLFFPVAALGLGWTGASLVAAALVGLLGVVALRAAPPLPGAPAAP--------
+-----------PTTTPDA-------GRPRAGRARAPLPATVWFFAGIAFLTGFGMQATNM
+YLPLFAVESLDQTLVIGGAAAATSGVIGVFSRIWWSRRMAAGHRPTTLLAGIALGAVVGV
+VVFLGADLLHAPALLWVGAAVHGLTVLGTNVVTNAGLMDAVPAHHLGRASGVNAMGMYAG
+FACGPLVMGLMRDLTGDFRAGFLAVGVFYLLALAVVGLLRRHTDRQGA-PRA--A
+>SA211_MHAAABBN_01624
+M-----------------------------TLP--APAARR--PSAALLWVLLAAMGAGP
+LFNYGVSASSTVVMERLDVTSGQLGTVMTVVFAAAAVTSLGLGRAADRLSARAQLSIIFG
+GTAAALVLGAVAPSLPVLYAAAAVAGVTQAISNPTTNRIIRTVVPPERRIGWVGVKQSGV
+QAAQLVGGLFFPAASLALGWTGAALGAAVLIGALWVLALVAAPPLPGAP--P--------
+-----------PATGPVG-------GRRR--RDTSPLPATVWFFAAIAFLTGLGMQATNT
+YLPLFAVETLGMTLVAGGAAAAVSGVVGVLSRIGWSRRMSSGDRPTTLLAVICLGAVAGV
+AVFLAADLLDLPALLWVGAAVHGLTVLGANVVINAGLLSEVPAERLGRATGANSMGMYAG
+FALGPLLMGVLRDVTGDYRAGFAVVALGYLLALGVVLLLRRHVGRRGA------A
+>TT9_LFPAFLNI_01847
+M-----------------------------TPP--APAARR--PSAALLWVLLAAMGAGP
+LFNYGVSASSTVVMERLDVTSGQLGTVMTVVFAAAAVTSLGLGRAADRLSARAQLSIIFG
+GTAAALVLGAAAPSLPVLYAAAAVAGVTQAISNPTTNRIIRTVVPPERRIGWVGVKQSGV
+QAAQLVGGLFFPAASLALGWTGAALGAAVLIGALWVLALVAAPPLPGAP--P--------
+-----------PATGPVG-------GRRR--RDTSPLPATVWFFAAIAFLTGLGMQATNT
+YLPLFAVETLGMTLVAGGAAAAVSGVVGVLSRIGWSRRMSSGDRPTTLLTVICLGAVAGV
+VVFLAADLLDLPVLLWVGAAVHGLTVLGANVVINAGLLSEVPAERLGRATGANSMGMYAG
+FALGPLLMGVLRDVTGDYRAGFAVVAAGYLLALGVVLLLRRHVGRRGA------A
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000611.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000611.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a7a2fea6ca93ca9140fb4f50937ad96c43bd11be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000611.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00936
+MPHRRRRPCVPVALSVAAALGLSLSACASTTTAGVGSQSPAPSSAAGAASSAAGTSSAAP
+TTSAALTTSGTAAEIAGDEAAAQAQDDAATRTALNRAVAEDGIPYAELDPSLTPV-PDGA
+SILWEGLAVGAQSLRVDARAGEEYTVVLLCAEQDGSRRSLVMATVPGEDFSDVMAESPG-
+CGHWSAGL-PAREADGPLTLTGVVPDGGPFRMVVYRSEG
+>KBS0714_MOLHKGIG_01924
+M-----------------------------------------------------------
+----------TLVE------------------------------YTRRHPDADHLDPEKE
+SVLEEAVGTGTQQITVDAQQGAVLRVIVLCP-SDATGETEILTSRGGGGTKTWMAGSEAL
+CGGWSAAT-PPVDEAGPMTFTVTVDNDKPFRMVLTAPSA
+>KD337_NAFOICDF_00868
+M-----------------------------------------------------------
+----------TLEE------------------------------YTRQNPDSDYLHPETE
+SVLQEKVGTGTQQITVDAQEGAVLRVILLCP-SDATGKTDIHTSRGAEGEKTWMAGSEAL
+CGGWSAAT-PPVEKAGPMTFSATVDNDKPFRMVLTAPAA
+>SA211_MHAAABBN_01620
+M-----------------------------------------------------------
+----------TLVE------------------------------YTRQHPDADYLDPEKE
+SVLEEAVGTGTQQITVDAQQGAVLRVIVMCP-SDATGETEILTSRGGGGTKTWMAGSEAL
+CGGWSAAT-PPVDEAGPMTFTVTVDNDKPFRMVLTAPSA
+>TT9_LFPAFLNI_01844
+M-----------------------------------------------------------
+----------TLVE------------------------------YTRRHPDADHLDPEKE
+SVLEEAVGTGTQQITVDAQQGAVLRVIVLCP-SDATGETEILTSRSGGGTKTWMAGSEAL
+CGGWSAATPPPVDEAGPMTFTATVDNDKPFRMVLTAPSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000612.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000612.fa
new file mode 100644
index 0000000000000000000000000000000000000000..527b0a646b9dc17c58c2e9d9b2d0e5e31ac9a574
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000612.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00937
+MSGSVRVSGAVRVDAWLWAVRVYKTRSAATAAVRGGHVRVNDEPVKAAHTLAVGDRVRVR
+KDQRERILEVTGLIGTRVGAPVAVTNYIDHSPPPIPRELLAVPHRERGAGRPTKRDRRKL
+DELRGRASDERS
+>KBS0714_MOLHKGIG_01923
+M-------SGVRIDAWLWAVRLYKTRSAATAAVRAGHVRIDGEPVKAATPVVVGNRVRVR
+QDGRERILEVTGLIAKRVGAPVARQQYVDHSPPPVPRELLAVPYRERGAGRPTKRDRRQL
+DALRGR---DRR
+>KD337_NAFOICDF_00872
+M-------GAVRIDAWLWAVRLYKTRSAATAAVRAGHVRIDGEPVKAATPVVVGNRVRVR
+QDGRERILEVTGLIAKRVGAPVARQQYVDHSPPPVPRELLAVPYRERGAGRPTKRDRRQL
+DALRGRASTGRG
+>SA211_MHAAABBN_01619
+M-------SGVRIDAWLWAVRLYKTRSAATAAVRAGHVRIDGEPVKAATPVVVGNRVRVR
+QDGRERILEVTGLIAKRVGAPVARQQYVDHSPPPVPRELLAVPYRERGAGRPTKRDRRQL
+DALRGR---DRR
+>TT9_LFPAFLNI_01843
+M-------SGVRIDAWLWAVRLYKTRSAATAAVRAGHVRIDGEPVKAATPVVVGNRVRVR
+QDGRERILEVTGLIAKRVGAPVARQQYVDHSPPPVPRELLAVPYRERGAGRPTKRDRRQL
+DALRGR---DRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000613.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000613.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cdc0f06e3795ab5c470d7df8dd645fcb587d3c9a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000613.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00938
+MEADRPRGPGPAAAVVVPRRCTPTPAPPTSLEDPVLSVTDLRQIDTAAADLSRIIPRADV
+DVASTVPVVAPILEQVRTGGEAALLELAERFDGVRPPALRVPAEALAAALEGLDADVRAA
+LEESIRRARLVHAAQLPQDSTVELGEGASVQNHWIPVDRVGLYVPGGRAVYPSSVVMNVV
+PAQAAGVGSLAVTSPPQADHGGLPHPTVLAACALLGVDEVYAAGGAQAVAMLAHGVRDER
+G-GWLCAPVDMVTGPGNVYVAAAKRALQGIIGVDAEAGPSEIAVIADGTARADWVAADLI
+SQSEHDPLAASVLITDSEDLVRDVLAAIEAQVPGSFHEEQIRVALTGPQSGVLLVRDLDQ
+AVEVSDRYATEHLEIQTRDPEAVAARIRNAGAVFVGPHAPVPLGDYSAGSNHVLPTSGTA
+RHSSGLSTVTFLRLQQRIRYTETGLKELAEGISVLAEDERLPAHGVAVRARFA
+>KBS0714_MOLHKGIG_01922
+----------------------------------MLSVTDLRPLDTATADLSRIIPRANV
+DVSSVVPVIAPIIEQVRHGGEQTLLDLAERFDGVRPPALRVPGEALEAALAGLDPRVRAA
+LEESIRRARLVHAAQHPQDSTVELGEGAVVENHWIPVGRVGLYVPGGRAVYPSSVVMNVV
+PAQAAGVGSLAVTSPPQRDHGGLPHPTVLAACALLGVDEVYAAGGAQAVAMLAHGVQDDD
+G-GWLCAPVDLVTGPGNVYVAAAKRALQGVIGVDAEAGPSEIAVIADGTARADWVAADLI
+SQSEHDPLAASVLITDSEDLLRDVQAAIEAQVPGAFHEDQIREALTGPQSGVLLVRDMDQ
+AVEVSDRYATEHLEIQTRDPEALVGRIRNAGAVFVGPYAPVPLGDYSAGSNHVLPTSGTA
+RHSSGLNTVTFLRLQQRIRYTETGLEEVADGIGVLAEDERLPAHGAAIRARFA
+>KD337_NAFOICDF_00873
+MEADR------------------TALDPQ--EEPVLSVTDLRELDTAAADLSAIVPRAEV
+DVAYTVPVVAPIIEQVRTGSEQTLLDLAERFDGVRPPALRVPAEALTAALEGLDPAVRAA
+LEESIARARKVHAAQVPSGSTVELGEGAVVENRWVPVERVGLYVPGGRAVYPSSVVMNVV
+PAQAAGVESLVVTSPPQRDHGGLPHPTVLAACALLGVDEVYAAGGAQAVAMLALGVRADD
+GDGWLCAPVRMVTGPGNVYVAAAKRALQGVIGTDAEAGPSEIAVIADGTARADWVAADLI
+SQSEHDPLAASVLITDSADLLRDVLASVEAQVPGSFHEEQIRVALTGPQSGVLLVRDMEQ
+ALEVSDLYATEHLEIHTRDADALAARVRNAGAVFVGPYSPVPLGDYSAGSNHVLPTSGTA
+RFSSGLNTVTFLRSQQLIRYGEAGLKALADGISALAEDERLPAHGVAVRARFA
+>SA211_MHAAABBN_01618
+----------------------------------MLSVTDLRPLDTATADLSRIIPRANV
+DVSSVVPVVAPIIEQVRHGGEQTLLDLAERFDGVRPPALRVPGEALEAALAGLDPRVRAA
+LEESIRRARLVHAAQHPQDSTVELGEGAVVENHWIPVGRVGLYVPGGRAVYPSSVVMNVV
+PAQAAGVGSLAVTSPPQRDHGGLPHPTVLAACALLGVDEVYAAGGAQAVAMLAHGVQDDD
+G-GWLCAPVDLVTGPGNVYVAAAKRALQGVIGVDAEAGPSEIAVIADGTARADWVAADLI
+SQSEHDPLAASVLITDSEDLLRDVQAAIEAQVPGAFHEDQIREALTGPQSGVLLVRDMDQ
+AVEVSDRYATEHLEIQTRDPEDLVGRIRNAGAVFVGPHAPVPLGDYSAGSNHVLPTSGTA
+RHSSGLNTVTFLRLQQRIRYTETGLEEVADGIGVLAEDERLPAHGAAIRARFA
+>TT9_LFPAFLNI_01842
+----------------------------------MLSVTDLRPLDTATADLSRIIPRANV
+DVSSVVPVIAPIIEQVRHGGEQTLLDLAERFDGVRPPALRVPGEALEAALAGLDPRVRAA
+LEESIRRARLVHAAQHPQDSTVELGEGAVVENHWIPVGRVGLYVPGGRAVYPSSVVMNVV
+PAQAAGVGSLAVTSPPQRDHGGLPHPTVLAACALLGVDEVYAAGGAQAVAMLAHGVQDDD
+G-GWLCAPVDLVTGPGNVYVAAAKRALQGVIGVDAEAGPSEIAVIADGTARADWVAADLI
+SQSEHDPLAASVLITDSEDLLRDVQAAIEAQVPGAFHEDQIREALTGPQSGVLLVRDMDQ
+AVEVSDRYATEHLEIQTRDPEALVGRIRNAGAVFVGPYAPVPLGDYSAGSNHVLPTSGTA
+RHSSGLNTVTFLRLQQRIRYTETGLEEVADGIGVLAEDERLPAHGAAIRARFA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000615.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000615.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e5eabf9674030bed18194a4f6138dd7ff085f6e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000615.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00941
+MTTTPATPGLTPAPLVRCVTAQNPSPMTLAGTNTYVVAAPDSDAAVVVDPGPEDDAAAHL
+ERVRAAAEGRRIALILVTHRHADHTGGVDAFHTATGAPVRAADPDWCRGGAAVLTPDERI
+DVAGTPVLAWHTPGHTSDSYSFAVPDAGAHGAVITGDTILGSGTTMLDHPDGTLTDYLAS
+LRRLEAAGPLTVLPAHGPVPEPLDVVARDYRHHREGRLAQVSAALAELGEDEAATVTPEQ
+LAPRIYPGLEGTVARVAVQTVAAHLRHLREG
+>KBS0714_MOLHKGIG_01919
+MTTTTATPGPTPAPLVRCVTAQNPSPMTLAGTNTYVVAAPDSDAAVVVDPGPEDDVAAHL
+ERVRAAAEGRRIALILVTHRHADHTGGVDAFHAATGAPVRAADPDWCRGGAAVLTPDERI
+DAAGTPMLAWHTPGHTSDSYSFAVPDAGAHGAVITGDTILGSGTTMLDHPDGTLTDYLAS
+LRRLEAAGPLTVLPAHGPVPEPLDVVARDYRHHREGRLEQIRAALAALPETEAATITPED
+LAPRIYPGLTGTVARVAVQTVAAHLRHLRED
+>KD337_NAFOICDF_00876
+MTTTPATPGLTPAPLVRCVTAQNPSPMTLAGTNTYVLFADDADAAVVLDPGPAEDAEGHL
+ERVRQAAEGRRIELVLVSHRHADHTGGIDAFHAGTGAPVRAADPSHCRGGGLPLTPDEEI
+VRAGVRILAWHTPGHTSDSYSFAVPESGPHGAVLTGDTILGAGTTMLDHPDGTLTDYLAS
+LARLQAAGPLTVLPAHGPVPAPLDVIARDYIDHREGRLFQLRRALDGMDPARAAMVTPSE
+LVGVIYPEVTGQVARVAEQVLAAHLAYLRRG
+>SA211_MHAAABBN_01615
+MTTTTATPGPTPAPLVRCVTAQNPSPMTLAGTNTYVVAAPDSDAAVVVDPGPEDDVAAHL
+ERVRAATEGRRIALILVTHRHADHTGGVDAFHAATGAPVRAADPDWCRGGAAVLTPDERI
+DVAGTPVLAWHTPGHTSDSYSFAVPDAGAHGAVITGDTILGSGTTMLDHPDGTLTDYLAS
+LRRLEAAGPLTVLPAHGPVPEPLDVVARDYRHHREGRLEQIRAALAALPETEAATITPED
+LAPRIYPGLTGTVARVAVQTVAAHLRHLREG
+>TT9_LFPAFLNI_01839
+MTTTTATPGLTPAPLVRCVTAQNPSPMTLAGTNTYVVAAPDSDAAVVVDPGPEDDVAAHL
+ERVRAAAEGRRIALILVTHRHADHTGGVDAFHAATGAPVRAADPDWCRGGAAVLTPDERI
+DAAGTPVLAWHTPGHTSDSYSFAVPDAGAHGAVITGDTILGSGTTMLDHPDGTLTDYLAS
+LRRLEAAGPLTVLPAHGPVPEPLDVVARDYRHHREGRLEQIRAALAALPETEAATITPED
+LAPRIYPGLTGTVARVAVQTVAAHLRHLREG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000619.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000619.fa
new file mode 100644
index 0000000000000000000000000000000000000000..96d6834a323cc8453363f6ad0a504e79ef8c0417
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000619.fa
@@ -0,0 +1,11 @@
+>AS2_ACLBLIBL_00949
+MAKDKDVRPIIKLKSTAGTGYTYVTRKNRRNNPDRITLKKYDPVVRKHVDFREER
+>KBS0714_MOLHKGIG_01909
+MAKDKDVRPIIKLKSTAGTGFTYVTRKNRRNNPDRITLKKYDPVVRKHVDFREER
+>KD337_NAFOICDF_00889
+MAKDKDVRPIIKLKSTAGTGYTYVTRKNRRNNPDRITLKKYDPVVRKHVDFREER
+>SA211_MHAAABBN_01605
+MAKDKDVRPIIKLKSTAGTGFTYVTRKNRRNNPDRITLKKYDPVVRKHVDFREER
+>TT9_LFPAFLNI_01829
+MAKDKDVRPIIKLKSTAGTGFTYVTRKNRRNNPDRITLKKYDPVVRKHVDFREER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000620.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000620.fa
new file mode 100644
index 0000000000000000000000000000000000000000..232ee5fbccda09d141faffd4977f919a5a081e91
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000620.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00950
+MAKKSKIAKNEQRKAIVARYAEKRLELRKTLVDPNASDEAREAARLGLQKLPRDASPVRV
+RNRDAIDGRPRGTFQRFGISRVRFRDMAHRGELPGVTKSSW
+>KBS0714_MOLHKGIG_01908
+MAKKSKIAKNEQRKAIVARYAEKRLELRKTLVDPNASDEAREAARLGLQKLPRDASPVRV
+RNRDAIDGRPRGTFQRFGISRVRFRDMAHRGELPGVTKSSW
+>KD337_NAFOICDF_00890
+MAKKSKIAKNEQRKVMVARNAEKRLELKKTLIDPNASDEAREAARVGLQKLPRDASPVRV
+RNRDAIDGRPRGTFQRFGISRVRFREMAHRGELPGVTKSSW
+>SA211_MHAAABBN_01604
+MAKKSKIAKNEQRKAIVARYAEKRLELRKTLVDPNASDEAREAARLGLQKLPRDASPVRV
+RNRDAIDGRPRGTFQRFGISRVRFRDMAHRGELPGVTKSSW
+>TT9_LFPAFLNI_01828
+MAKKSKIAKNEQRKAIVARYAEKRLELRKTLVDPNASDEAREAARLGLQKLPRDASPVRV
+RNRDAIDGRPRGTFQRFGISRVRFRDMAHRGELPGVTKSSW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000621.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000621.fa
new file mode 100644
index 0000000000000000000000000000000000000000..717187b0627b63b93d1887593cf380b8389316be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000621.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00951
+MAMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWMAVERTERKER
+TGRNPRTGEEITIPAGYSVKVTAGSKLKAAASE
+>KBS0714_MOLHKGIG_01907
+MAMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKER
+TGRNPRTGEEITIPAGHSVKVTAGSKLKAAASE
+>KD337_NAFOICDF_00891
+MAMNRKELVAAVAERSGNTQAAVSDVLDALFEAFTAQVKKGEKVSIPGWLAVERTERKER
+TGRNPRTGEEITIPAGYSVKVTAGSKLKAAASE
+>SA211_MHAAABBN_01603
+MAMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKER
+TGRNPRTGEEITIPAGHSVKVTAGSKLKAAASE
+>TT9_LFPAFLNI_01827
+--MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKER
+TGRNPRTGEEITIPAGHSVKVTAGSKLKAAASE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000625.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000625.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c29a0bb2d1f7a6fa473a6093ff681992b637fee4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000625.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_00955
+----------------------------------------------MGGGLLGTALGYGA
+GHASAAPAAPAASGAAGAGASPSEVMGDTGIEGEVGRAGWAEPGGQSARVAVSSPVGTDT
+VPFHGPRQAGVDTPAQAHAVFLAFDLLPDTDRLGIERMLRLLTDDAARLTQGRATIADTE
+PELAAAPARLTVTFGFGPELLARVAPDRAPAWLRPLPAFPQIDRLDPAFGDGDLLLQICG
+DDRMSVAHARRMLIKAARPFAAERWAQEGFRASRGAHPTGTTMRNLFGQVDGTANPAAQT
+PHLDRVVWGVGAE--QVGITPWIQDGTSLVVRRIEMLLDTWDELDRPGKERVIGRTLGTG
+APLTGEQEHDEPDFVALGPAGFPVIPDISHLRRARMDVPEYGMLRRGYNYDDPRGAIESG
+AGLIFAAYQADVDRQFVPVQERLAESDHLNLWTVPVGSAVFAIPPGCAEGGFVGDVLFA
+>KBS0714_MOLHKGIG_01903
+MPTTDPAVR------PDDHHGSGGREGARPAPGGPSRRGLLLGAGAVGGGLLGTALGYGA
+GHASAS-TAPGASAAPGAGASPSEVMGDTGIEGDVGRAGWAEPGGQAARVAVSSPVGTDT
+VPFHGPRQAGVDTPAQAHAVFLALDLREDADRVRIERMLRLLTDDAARLTQGRATIADTE
+PELAAAPARLTVTFGFGPELVRRVAPDRAPAWLRPLPAFEQIDRLDPAFSDGDLLLQICG
+DDRMSVAHTRRMLLKAARPFATERWVQEGFRSARGAHPTGTTMRNLFGQVDGTGNPAADT
+PHLDRVVWGVGAE--QVGVTPWIPDGTSVVIRRIEMLMDTWDELDRPAKEKVIGRRLGTG
+APLTGEQEHDEPDFDAVGPTGFPVISDIAHLRRARGEEPEYGMLRRGYNYDDPRGALEAG
+SGLIFAAYQADVDRQFVPVQARLAESDHLNLWTVPVGSAVFAIPPGCAEGGFVGDALFA
+>KD337_NAFOICDF_00895
+MPTTD-----------------------------PSRRGVLFGLGAVGGGLLGGAVGYGA
+GAAQAT-PAPGG-APSGVDASPSGVMEDTGLEGEVGRAGWAEPGGEASRVAVSSPVGTDT
+VPFHGPRQAGVDTPAQTHAMLVALDLLPETDRAGVRALLRLLSDDAARLTQGRATLADTE
+PELAAAPARLTVTFGFGPELLARVAPERAPAWLKPLPAFPTIDALEDRWSGGDLLLQICG
+DDRISVAHARRMLGKVARPFAEVRWVQEGFRAARGTHPTGTTMRNLFGQVDGTANPQGGS
+PALERIVWGAGQEAADLGIAPWIPDGTSLVVRRIDMLMDTWDELDRPAKEKVIGRTLGTG
+APLTGELETDAPDLEAIGPTGFPVIPDTAHLRRARGPEPEYGMLRRGYNYDDGAGASGTG
+AGLIFAAFQADVDRQYIPVQERLAASDHLNLWTRPVGSAVFAIPPGCAEGGFVGDVLFA
+>SA211_MHAAABBN_01599
+MPTTDPVVRSDDHHGPDDHHGPDGREGARPTPGGPSRRGLLLGAGAVGGGLLGTALGYGA
+GHASAS-TAPGASAASGTGASPSEVMGDTGIEGDVGRAGWAEPGGQAARVAVSSPVGTDT
+VPFHGPRQAGVDTPAQAHAVFLAFDLHEDTDRVRIERMLRLLTDDAARLTQGRATIADTE
+PELAAAPARLTVTFGFGPELVRRVAPDRAPAWLRPLPAFEQIDRLDPAFSDGDLLLQICG
+DDRMSVAHARRMLLKAARPFATERWVQEGFRSARGAHPTGTTMRNLFGQVDGTGNPAADT
+PHLDRVVWGVGAE--QVGVTPWIADGTSVVIRRIEMLMDTWDELDRPAKEKVIGRRLGTG
+APLTGEQEHDEPDFDAVGPAGFPVISDIAHLRRARGEEPEYGMLRRGYNYDDPRGALEAG
+SGLIFAAYQADVDRQFVPVQARLAESDHLNLWTVPVGSAVFAIPPGCAEGGFVGDALFA
+>TT9_LFPAFLNI_01823
+MPTTDPAVR------PDDHHGPDGREGARPAPGGPSRRGLLLGAGAVGGGLLGTALGYGA
+GHASAS-TAPGASAAPGAGASPSEVMGDTGIEGDVGRAGWAEPGGQAARVAVSSPVGTDT
+VPFHGPRQAGVDTPAQAHAVFLAFDLHEDTGRVRIERMLRLLTDDAARLTQGRATIADTE
+PELAAAPARLTVTFGFGPELVRRVAPDRAPAWLRPLPAFEQIDRLDPAFSDGDLLLQICG
+DDRMSVAHARRMLLKAARPFATERWVQEGFRSARGAHPTGTTMRNLFGQVDGTGNPAADT
+PHLDRVVWGVGAE--QVGVTPWITDGTSVVIRRIEMLMDTWDELDRPAKEKVIGRRLGTG
+APLTGEQEHDEPDFDAVGPTGFPVISDIAHLRRARGEEPEYGMLRRGYNYDDPRGALEAG
+SGLIFAAYQADVDRQFVPVQARLAESDHLNLWTVPVGSAVFAIPPGCTEGGFVGDALFA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000626.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000626.fa
new file mode 100644
index 0000000000000000000000000000000000000000..252e994835bf11b3ad813d0c64672ce3d36b3bf5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000626.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_00956
+-------------------------------------MLVAAAGAGALAVAAWLTGITAVRELSDPGWITRWGVPAGELV
+SNLAMTMAIAAIIFAAGILPPHAAGTERWHRSAAQRRADAQEGPLPEHPAFTRTLRVAAVSAGVWTVAALAVGILSYSDL
+AGIPVTAGEGFTAGLVAYVAGISVGQAWFWVTVIAAVVTTLVIAVRSHNGLFWTGILAMIGIVPLALIGHAAGGDDHYGA
+VNSIGLHLLGVVVWVGGLLVLVAISDTLVGPDGAQGRARAPREQGPTPLLHTALSRYSVLAGLGLVTVALSGVVNASIRM
+DDPAQLTSPYGMLVVIKFLATLGLGLVGLMHRRWVIPRLDAGPDRPSPAPARRLLWQLIAVEAVVMAAVMGLSAVLSRTA
+PPVPEELAPDATPARILTGYELPPELTGARWITEWRLDWLWVAIIAFLALWYLRSVWRLHRRGDRWPVLRTLSWMVGLAV
+LLWATSGSPAVYGRVLFSSHMMGHMTLTMISPLFLVLGAPITLALRALPSRTDGSRGPREWILWIVHSPWGRFITNPIVA
+GVNFAGSILVFYYTDFFRFSLETHVGHEFMNVHFLLTGFLFALVMVGSDPLPSRPAYPLRLVLLLATMVFHAFIGVAMTG
+SAGLIQASWFGNMGRDWGPSALEDQHIGGAVMWGIGEFPTVVMAVMVAVLWYRNDRRNAERLDRRADRDGDAELHRWNEM
+YARMHGTPAAPAEPAPAAASPADPTPAASAPRPRRPGDPRWPLSTAHPPEDPAGPEDRAAPARWPRPPSSGCWR
+>KBS0714_MOLHKGIG_01902
+--MSAATAPARGSHPAENDDAARPGPSGPVGVPRWIWVLVAAAGAAGLAAAGWLTGVTAARQLSDPGWITRWGVPVGELV
+SNVAMSLTIAALIFAAGVLPPHAAGTERWHRSARQRREDADAAPLPEHPAFTRVMRIAAVSAGVWTVAALAVGVLSYSDL
+AGIPVTAGQGFTDGLAAYVVGISVGQAWFWVTVIAAVVTTLAIAVRSHNGLFWTGILAMLALVPLALIGHAAGGDDHTGA
+VNSIGLHLLGVVVWVGGLLVLVAISDTLVGPNGAQGRGRSLRRQGPAPLLHTVLTRYSVLAGLGLVTVALSGVVNASIRM
+DDPAQLLSPYGILVSAKFLAALGLGLIGLLHRRWVIPRLDAGPDRPSPAPARRLLWQLIAVEAVIMGAVMGVSSVLSRTA
+PPVPEELAPDASPARILTGYELPPALEGARWITMWRFDWLWVAIIAFLTLWYLRSVWQLRRRGDRWPVLRTVAWLAGLAV
+LLWATSGSPAVYGRVLFSAHMVGHMTLTMLSPVFLVLGAPITLALRALPSRTDGTRGPREWILWIVHSPWGRFITNPIVA
+GVNFAGSILVFYYTDFFRFSLETHVGHEFMNVHFLLTGFLFALVMIGSDPLPRRPPYALRLVLLMATMVFHAFIGVAMTT
+STGLLQASWFGNMGRDWGPTALEDQRIGGAVMWGIGEFPTVMMAVMVAVLWYRSDRKNAVRLDRQADRDGDAELRRWNEM
+YARMHGTPATD------APSGAEPAARDSSTGPEEARDVR----------------------------------
+>KD337_NAFOICDF_00896
+MPTSTAVPPATAQH--------------PLGVPRPVLLGAAVVGVLALVLAAWFAGVTAPRELSDPGALTRWGVPVGKAV
+NNAAMAVTIGALIFAAGILPPHAAGTERWHRSPRQRAQDAEEGPRPEHPAFGRVMAVAAAAAGVWTVAALAVGVLSYSDL
+AGIPVSAGGSFTDGLLAYTLDISVGRAWFWVTVIAAVVTTLAIGVRSHTGLFWTGVLAMLGIVPLALIGHAAGGDDHYGA
+VNSIGLHLLGVVVWVGGLLVLALISDTLVGPNGAQGRGASLRRQGPAPLLHTVVSRYSVLAGLGLVTVALSGVVNASIRM
+DDPAQLLSPYGTMVLTKAGAVLLLGGIGLLHRRWIIPRLDDDGAAESPPAARRLLWQLIAVEAVVMAAVVGVSAVLARTA
+PPVPEELAPDATPARILTGYELPPELTGDRWFTMWRWDWLWVAIIAFLAVWYVRAAWQLRRRGDRWPVLRTLSWLIGLAV
+LAWATSGAPAVYGMVLFSAHMVGHMVLTMIVPLFLVLGAPITLALRALPARTDGTRGPREWILWIVHSPWGAFITNPIVA
+GVNFAGSILVFYYTDFFRFSLETHVGHEFMNVHFLLTGFIFATVMVGADPLPSRPPYPLRLVLLLATMVFHAFIGVAMTT
+STGLLQASWFGSIGRDWGPDALTDQHIGGGIMWGIGEFPTVLMAVTVAVLWARSDTKTAARLDRRADQDGDAELARWNQM
+YAAMN-HPGADQDPA----RGDRP--------------------------------------------------
+>SA211_MHAAABBN_01598
+--MSAATAPARGSHPTENDDAARPGPSGPVGVPRWIWVLVAAAGAAGLAAAGWLTGVTAARQLSDPGWITRWGVPVGELV
+SNLAMSLTIAALIFAAGVLPPHAAGTERWHRSARQRREDADAAPLPEHPAFTRVMRIAAVGAGVWTVAALAVGVLSYSDL
+AGIPVTAGQGFTDGLAAYVVGISVGQAWFWVTVIAAVVTTLAIAVRSHNGLFWTGILAMLALVPLALIGHAAGGDDHNGA
+VNSIGLHLLGVVVWVGGLLVLVAISDTLVGPNGAQGRGRSLRRQGPAPLLHTVLTRYSVLAGLGLVTVALSGVVNASIRM
+DDPAQLLSPYGILVSAKFLAALGLGLIGLLHRRWVIPRLDAGPDRPSPAPARRLLWQLIAVEAVIMGAVMGVSSVLSRTA
+PPVPEELAPDASPARILTGYELPPALEGARWITMWRFDWLWVAIIAFLSLWYLRSVWQLRRRGDRWPVLRTVAWLAGLAV
+LLWATSGSPAVYGRVLFSAHMVGHMTLTMLSPVFLVLGAPITLALRALPSRTDGTRGPREWILWIVHSPWGRFITNPIVA
+GVNFAGSILVFYYTDFFRFSLQTHVGHEFMNVHFLLTGFLFALVMIGSDPLPRRPPYALRLVLLMATMIFHAFIGVAMTT
+STGLMQASWFGNMGRDWGPTALEDQRIGGAVMWGIGEFPTVMMAVMVAVLWYRSDRKNAVRLDRQADRDGDAELRRWNEM
+YARMHGTPVTD------APSGAEPVARDSSTGPEEARDVR----------------------------------
+>TT9_LFPAFLNI_01822
+--MSAATAPARGSHPAENDDAARPGPSGPVGVPRWIWMLVAAAGAAGLAAAGWLTGVTAARQLSDPGWITRWGVPVGELV
+SNLAMSLTIAALIFAAGVLPPHAAGTERWHRSARQRREDADAAPLPEHPAFTRVMRIAAVSAGVWTVAALAVGVLSYSDL
+AGIPVTAGQGFTDGLAAYVVGISVGQAWFWVTVIAAVVTTLAIAVRSHNGLFWTGILAMLALVPLALIGHAAGGDDHTGA
+VNSIGLHLLGVVVWVGGLLVLVAISDTLVGPNGAQGRGRSLRRQGPAPLLHTVLTRYSVLAGLGLVTVALSGVVNASIRM
+DDPAQLLSPYGILVSAKFLAALGLGLIGLLHRRWVIPRLDAGPDRPSPAPARRLLWQLIAVEAVIMGAVMGVSSVLSRTA
+PPVPEELAPDASPARILTGYELPPALEGARWITMWRFDWLWVAIIAFLTLWYLRSVWQLRRRGDRWPVLRTVAWLAGLAV
+LLWATSGSPAVYGRVLFSAHMVGHMTLTMLSPVFLVLGAPITLALRALPSRTDGTRGPREWILWIVHSPWGRFITNPIVA
+GVNFAGSILVFYYTDFFRFSLETHVGHEFMNVHFLLTGFLFALVMIGSDPLPRRPPYALRLVLLMATMVFHAFIGVAMTT
+STGLLQASWFGNMGRDWGPTALEDQRIGGAVMWGIGEFPTVMMAVMVAVLWYRSDRKNAVRLDRQADRDGDAELRRWNEM
+YARMHGTPATD------APSGAEPAARDSSTGPEEARDVR----------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000629.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000629.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5480c1913f16bd68569b21a063604f16ea84bc52
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000629.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00959
+MTTLIVTSSAHGSTREIAERVAEVLRTSQSVETVVEDVAGAAAWLATADAVIVAAPVYEG
+SLAAEARHFLDSRRAELADKPLLFLASGGGYELDPKVREKLESYGPREIAFFRGALVEER
+LGWLEKLKLKVSRNENYGDYRDWDAIEAWAKSLSGHGVR
+>KBS0714_MOLHKGIG_01899
+MTTLIVTSSAHGSTREIAERVAEVLRTSQAVPTVVEDVEGAAAWLATADAVIVAAPVYTG
+SFAADARAFLDTRRAELTDLPLVILASGGAPELARPVREKLESYGPREVAYFRGALFEER
+LGRLEKLKLKLSRNEHYGDFRDWDAIEAWAKTLPGAGVR
+>KD337_NAFOICDF_00899
+MTALIVTASRHGSTREIAERVAEVLRTTAQTDTVVEDVAGAAAWLDTADAVVVAAPVYGD
+KLEKSAKAFLDSRRAELSQKSLVILYSGASPVPNRALADQLGTYGARDVKYLRGALVEER
+LGALEKLQIKLVKGR-YGDFRDWNAVEHWAKGLSAHGVN
+>SA211_MHAAABBN_01595
+MTTLIVTSSAHGSTREIAERVAEVLRTSQAVPTVVEDVEGAAAWLATADAVIVAAPVYTG
+SLAADARAFLDTRRAELADLPLVILASGGAPELAPPVREKLESYGPREVAYFRGALVEER
+LGRLEKLKLKLSRNEHYGDFRDWDAIEAWAKTLSGAGVR
+>TT9_LFPAFLNI_01819
+MTTLIVTSSAHGSTREIAERVAEVLRTSQAVPTVVEDVKGAAAWLATADAVIVAAPVYTG
+SLAADARAFLDTRRAELADLPLVILASGGAPELARPVREKLESYGPREVAYFRGALVEER
+LGRLEKLKLKLSRNEHYGDFRDWDAIEAWAKTLSGAGVR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000630.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000630.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b61164b1c6e0439d8d98cc5c9fc1985ec4c76fa3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000630.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00962
+MTQVLSGFVVVWVIIAVGFLVGRSGVLGEDARTVLSRTAFYIGSPALLFVTLSGADVAAV
+LGPQLWVATLSALAAAALFLAISIPVFKQRPASERIMAALSASMVNSANLGIPIAAYVLG
+DAALAAPVLIFQLAIYTPLYVAAMDVATTSEARARA----------AGGRPAVRRSRGQA
+LAAQLRQTGTNPMILGSAAGLLFSLNDWTLPGPLMQSVELIGGLSIPAMLLAFGMSLVGS
+RPLERAGGRRADVLLASGVKLLVHPLIAWVLAQFVLGLDAREVFVAVVLASLPTAQNVFV
+SAVRYDAGLRVAKDTILITTIVAIPAMIAVALLLA
+>KBS0714_MOLHKGIG_01896
+MTQVLSGFAVVWVIILVGVLVGRTGVLGEHGRTVLSRAAFFIGNPALLFVTLSRADVGAV
+LGPQLWVATLSAFTAAALYLAVTVPLLKGRSASERIMSALSASLVNSANLGIPIAAYVLG
+DAALAAPALIFQLAIYTPLYVAAMDAATAREARRRTT---------AGRRRAVRRSPGRA
+VADQVRHTVTNPLILGSVAGLVFSLTGWSLQGPLMESVELIGGLSIPAMLLAFGMSLVGS
+RPLERAGGRRADVLLASAVKLVVHPLLAWLLAQFVFGLDARHVFVAVVLASLPTAQNVFV
+TAVRYDTGLRVSKDTILVTTIVAIPAMIAVALLLA
+>KD337_NAFOICDF_00901
+MIEVLSGFSVVWVIILVGLLLGRTGVLGDEAREVLSRTAFFVGNPALLFVTLSRADVGAV
+LGPQLWVACLSAFAAAVVFLGLSIPLLKGRPASERVMSGLSASLVNSANLGIPIATYVLG
+DAALAAPALIFQLAIYTPVYVAVMDWATTHEAAARASSAGAAHDAGAPAPRTVR--PRNP
+VLAQLRQTATNPMILGAFGGLLLSFTGWTLPGPLMTSVELIGGLSIPAMLIAFGMSLAGS
+RPLARDSGRRADVLLASAVKLVVHPLVAWMIAQFVFGLDARRVFVAVVLASLPTAQNVYV
+SAVRYRAGETVSKDTILVTTIVAIPAMIAVALLLA
+>SA211_MHAAABBN_01592
+MTQVLSGFAVVWVIILVGVLVGRTGVLGEHGRTVLSRAAFFIGNPALLFVTLSRADVGAV
+LGPQLWVATLSAFTAAALYLAVTVPLLKGRSASERIMSALSASLVNSANLGIPIAAYVLG
+DAALAAPALIFQLAIYTPLYVAAMDAATAREVRRRTT---------AGRRRAVRRSPGRA
+VADQVRHTVTNPLILGSVAGLVFSLTGWSLPGPLMESVELIGGLSIPAMLLAFGMSLVGS
+RPLERAGGRRADVLLASAVKLVVHPLLAWLLAQFVFGLDARHVFVAVVLASLPTAQNVFV
+TAVRYDTGLRVSKDTILVTTIVAIPAMIAVALLLA
+>TT9_LFPAFLNI_01816
+MTQVLSGFAVVWVIILVGVLVGRTGVLGEHGRTVLSRAAFFIGNPALLFVTLSRADVGAV
+LGPQLWVATLSAFTAAALYLAVTVPLLKGRSASERIMSALSASLVNSANLGIPIAAYVLG
+DAALAAPALIFQLAIYTPLYVAAMDAATAREARRRTT---------AGRRRAVRRSPGRA
+VADQVRHTVTNPLILGSVAGLVFSLTGWSLQGPLMESVELIGGLSIPAMLLAFGMSLVGS
+RPLERAGGRRADVLLASAVKLVVHPLLAWLLAQFVFGLDARHVFVAVVLASLPTAQNVFV
+TAVRYDTGLRVSKDTILVTTIVAIPAMIAVALLLA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000633.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000633.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a542bc575a17729962ca3f2479fbe11e2f25d95a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000633.fa
@@ -0,0 +1,75 @@
+>AS2_ACLBLIBL_00969
+MLVTLSALFVVALAAPAVFRWTGRQGFYLLAAVPAAGFVWLLTQLPHVFALQEALDAGRPIPASAAHLDRSVPWVPYLDI
+ELAFRMDVLAAFMSLIVLGVGALVLAYCARYFREHEPRNAVFGGQLLAFAGAMFGLVTTDDLMVLYTFWEITSVLSFLLI
+GYSGHRIFARRSAITALIVTTFGGLAMLAGLIMLAHVSGSWRISGVLEAAPALMADPGMRGLLEVAVALVLIGALTKSAQ
+APFHFWLPAAMAAPTPVSAYLHAAAMVKAGVFLVARLAPEFHDLTSWQVLVLGVGLWTLVLGGWRALRQTDVKLVLAYGT
+VSQLGFLMVANGLGTRDAAMAGLAMLLAHAVFKAPLFMIVGIIDHEAGTRDLRQLSGIGRRHPVLAAVAVAAGLSMAGLP
+PLFGFVAKESVLASLAAHGAAHGGVWAWTPLVVMALGSVLTFAYTWRFLWGSFAVK--RDE-EGAPVPATRFRTRVTTLE
+LAPAALLALAGLVLAFLPGPVEGIITAHTGSLPPLDPAEKPAYLALWHGWTPILALSAGIWVLGALLALARRPFEALQER
+TESPLDAARGYRRLTGYVDETAVWVTGRTQTGSLRRYLGIILATAFLLPAAFLLFPVGRAERPLATSFLAADLIWFETPA
+QLLIVAIIAVATVFAVRARRRFKAIMLVSVTGYGAAALFALRGAPDLAITQVLVETIILVTLILGLRVLPPDWHDRRTGS
+RRLGRLAVAVGFALTMMWIAATALAARTAERISLPMPELAYTDGYGANAVNVTLVDIRAWDTWGEITVLAAAATGVASLI
+FLQHRDGRTRSIDDVAPGSVGAFGADSALGSRELSVVRSFAVDDREGQWLVAGHTMAPERRSIILEVVTRFMFPIMMLLS
+VYLLLAGHNTPGGGFAGGLLAGLALTLRFLAGGRYELQEASVIPAGPMIGLGLAIATLTGIAPLFFGGQILQSYVVEFTD
+LPLFGDALKLVSATAFDIGVYLVVVGLVIDVLRSLGGEVDRRGEEARRARLRAAGRRRHPRMPTPSTPDAPEA-------
+-------------AR
+>KBS0714_MOLHKGIG_01889
+MLVILTALFVVALAAPVLFRWTGRQGFYLLAAAPAAGFVWLLTQLPHVFALQEALDAGRPVPASAARLDRAVPWVPYLET
+ELAFRMDVLAAFMSLIVLGVGALVLAYCARYFREHEPRNAVFGGQLLAFAGAMFGLVTTDDLMVLYTFWEITSVLSFLLI
+GYSGHRIFARRSAITALIVTTFGGLAMLAGLIMLAHFAGSWRISGVLEAAPALMADAGLRGLLEVAVALVLIGALTKSAQ
+APFHFWLPGAMAAPTPVSAYLHAAAMVKAGVFLVARLAPEFHGLAMWQVLVIGVGLWTLLLGGWRALRQTDIKLVLAYGT
+VSQLGFLMVANGLGTRDAAMAGLAMLLAHAVFKAPLFMVVGIIDHEAGTRDLRQLSGIGRRHPALAAVAVVAGLSMAGLP
+PLFGFVAKESVLEGLAAHGVAHADVWGWTPLVLMTVGSVLTFAYTWRFLWGSFAAK--RDE-EGAAVPVTRFHTRVTTLE
+LAPAALLALAGLVLAFLPGPVEGIITAHTGSLPPLDPEEAPAYLALWHGWTPILALSAGVWVLGALLALGRPGVEAFQRR
+VEFPVDALRTYRKITGALDEVAIWVTGRTQTGSLRRYLGIILATAFLLPAAFLLFPVGRSERTLATSFLSADVAWFQTPA
+QLVVVLMIAVATVFAVRARRRFKAIMLVSVTGYGAAALFAMRGAPDLAITQVLVETIILVTLILGLRVLPPDWYDRRTGS
+RRLGRLAVAVGFALTMMWIAATALAARTAERISLPMPELAYTDGYGTNAVNVTLVDIRAWDTWGEITVLAAAATGVASLI
+FLQHRDGRTRSIDDVAPGSVGDFGADSSLGARELSVVRSFAVDDRKGQWLVAGHTMAPERRSIILEVVTRFMFPIMMLLS
+VYLLLAGHNTPGGGFAGGLLAGLALTLRFLAGGRYELQEASVIPAGPMIGLGLAIATLTGIAPLFFGGQILQSYVVEFTD
+LPLFGDALKLVSATAFDIGVYLVVVGLVIDVLRSLGGEVDRRGEEARRARLRAAARRRHPRMPTPSTPSTQEA-------
+-------------AR
+>KD337_NAFOICDF_00907
+MTVLLTALFAVALLAPVLFRRTGRRGFHLLAAAPAAGFVWVLAQLPQVFVLQDALDRGAPVPASAAHLDTTVEWIPYLDI
+ALSFRLDALSAFMSLIVLGVGALVLSYCASYFREHEPRHAVFGAELLAFAGAMFGLVTTDDVMVLYTFWEITSVLSFLLI
+GYSGQRIFARRSAIQALIVTTFGGLAMLAGLVMLAVQAGSWRVSGILAAAPELM-ERAPRGLLEAAVALVLVGALSKSAQ
+VPFHFWLPAAMAAPTPVSAYLHAAAMVKAGVFLVARLAPGFASLASWQVLVLGVGLWTLILGGWRALRQTDVKLVIAYGT
+VSQLGFLMVANGLGTRDAALAGLAMLLAHAVFKAPLFMVVGIIDHEAGTRDLRRLSGIGRREPALAAVAIVAAASMAGLP
+PLFGFVAKESVLESLAGHGEHAGTVWGWTPLVGMALGSVLTFAYTWRFLWGAFATKDGRDSPDGEPVPETRFHSRLTAED
+LLPPGLLALACLVLGLAPGLPEALISAHTAGLAPLDAAEEPAHLALWHGITPILGVSVAIWVLGAALAVARRPLQRLQAR
+VAFPVEAAAVYQRITGAVDAAAVWVTGRTQTGSLRRYLFIILATATALPALTMLVPAGEEDRVLATAFLEADLVPFTTPA
+QLGIAALVCVAAVLAVRARRRFMAIMLVSVTGYGSAALFALRGAPDLAVTQVLVESIVLITVILGLRVLPPDWHSKTTGR
+RRVPRLLLGVGFALVMMWVAATALGARTAERISLDMPRLAYEHGYGANAVNVTLVDLRAWDTWGEITVLAVAATGVASLV
+FLEHRDKRRRDLDTVVPGSVGNYGAESALGTRELSVVRSFAVDDRNDQWLIAGHTMAPERRSIILEVVTRFLFPAMMLLS
+VYLLLAGHNTPGGGFAGGLLAGLALALRYLAGGRYELQEASRIPAGTLLGLGLGIATLTGLAPLLFGGQVLQSYKVEFHD
+LWLFGDSLKIVSATAFDVGVYLVVVGLSIDVLRSLGAEIDRRGDEWQDARRRAARRRASPRPARPRPRPVPEGRAPAARA
+IPAHAARHRSEEDPR
+>SA211_MHAAABBN_01585
+MLVILTALFVVALAAPVIFRWTGRQGFYLLAAAPAAGFVWLLTQLPHVFALQEALDAGRPVPASAAHLDRAVPWVPYLEI
+ELAFRMDVLAAFMSLIVLGVGALVLAYCARYFREHEPRNAVFGGQLLAFAGAMFGLVTTDDLMVLYTFWEITSVLSFLLI
+GYSGHRIFARRSAITALIVTTFGGLAMLAGLIMLAHFAGSWRISGVLAAAPGLLADDGGRVLLEVAVGLVLIGALTKSAQ
+APFHFWLPGAMAAPTPVSAYLHAAAMVKAGVFLVARLAPAFHELATWQVLVLGLGLWTLLLGGWRALRQTDVKLVLAYGT
+VSQLGFLMVANGLGVRDAALAGLAMLLAHALFKAPLFMVVGIIDHEAGTRDLRELSGIGRRHPALAAVAVAAGLSMAGLP
+PLFGFVAKESVLEGLAAHGVAHADVWGWTPLVLMTVGSVLTFAYTWRFLWGSFAAK--RDE-EGAAVPVTRFHTRVTTLE
+LAPAALLALAGLVLAFLPGPVEGIITAHTGSLPPLDPAEKPAYLALWHGWTPILALSAGIWVLGALLALGRPGVEAFQRR
+VEFPVDALRTYRKITGALDEVAIWVTGRTQTGSLRRYLGIILATAFLLPAAFLLFPVGRSERTLATSFLSADVAWFQTPA
+QLVVVLMIAVATVFAVRARRRFKAIMLVSVTGYGAAALFAMRGAPDLAITQVLVETIILVTLILGLRVLPPDWYDRRTGS
+RRIARMAVAGGFALTMMWIAATALAARTAERISLPMPELAYTDGYGTNAVNVTLVDIRAWDTWGEITVLAAAATGVASLI
+FLQHRDGRTRSIDDVAPGSVGDFGADSSLGARELSVVRSFAVDDRKGQWLVAGHTMAPERRSIILEVVTRFMFPIMMLLS
+VYLLLAGHNTPGGGFAGGLLAGLALTLRFLAGGRYELQEASVIPAGPMIGLGLAIATLTGIAPLFFGGQILQSYVVEFTD
+LPLFGDALKLVSATAFDIGVYLVVVGLVIDVLRSLGGEVDRRGEEARRARLRAAARRRHPRMPTPSTPDAPEA-------
+-------------AR
+>TT9_LFPAFLNI_01809
+MLVILTALFVVALAAPVLFRWTGRQGFYLLAAAPAAGFVWLLTQLPHVFALQEALDAGRPVPASAARLDRAVPWVPYLEI
+ELAFRMDMLAAFMSLIVLGVGALVLAYCARYFREHEPRNAVFGGQLLAFAGAMFGLVTTDDLMVLYTFWEITSVLSFLLI
+GYSGHRIFARRSAITALIVTTFGGLAMLAGLIMLAHVSGSWRISGVLEAAPALMADPGMRGLLEVAVALVLIGALTKSAQ
+APFHFWLPAAMAAPTPVSAYLHAAAMVKAGVFLVARLAPEFHDLTSWQVLVLGVGLWTLVLGGWRALRQTDVKLVLAYGT
+VSQLGFLMVANGLGTRDAAMAGLAMLLAHAVFKAPLFMIVGIIDHETGTRDLRQLSGIGRRHPVLAAVAVAAGLSMAGLP
+PLFGFVAKESVLESLAAHGAAHGGVWGWTPLVLMTVGSVLTFAYTWRFLWGSFAAK--RDE-EGAAVPVTRFHTRVTTLE
+LAPAALLALAGLVLAFLPGPVEGIITAHTGSLPPLDPEEAPAYLALWHGWTPILALSAGVWVLGALLALGRPGVEAFQRR
+VEFPVDALRTYRKITGALDEVAIWVTGRTQTGSLRRYLGIILATAFLLPAAFLLFPVGRSERTLATSFLSADVAWFQTPA
+QLVVVLMIAVATVFAVRARRRFKAIMLVSVTGYGAAALFAMRGAPDLAITQVLVETIILVTLILGLRVLPPDWYDRRTGS
+RRLGRLAVAVGFALTMMWIAATALAARTAERISLPMPELAYTDGYGTNAVNVTLVDIRAWDTWGEITVLAAAATGVASLI
+FLQHRDGRTRSIDDVAPGSVGDFGADSSLGARELSVVRSFAVDDRKGQWLVAGHTMAPERRSIILEVVTRFMFPIMMLLS
+VYLLLAGHNTPGGGFAGGLLAGLALTLRFLAGGRYELQEASVIPAGPMIGLGLAIATLTGIAPLFFGGQILQSYVVEFTD
+LPLFGDALKLVSATAFDIGVYLVVVGLVIDVLRSLGGEVDRRGEEARRARLRAAARRRHPRMPTPSTPDAPEA-------
+-------------AR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000634.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000634.fa
new file mode 100644
index 0000000000000000000000000000000000000000..50cecd758cb46258516d95070212210e4de9a116
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000634.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00970
+MM-TVDLALLLAMGVMFAGGIYLVLERSLTRILLGIMLINNGAIMLLFLASGGVGLAPLF
+VRGRDPHEYADTLPQALILTAIVIGFAVTAFLTAMIYRSWLISREDEVEVDAEDVKIASQ
+GAWDAEDDSELVEEHSEFMDASTDPNAHYEHTTEARPQVQHVIPAPPTAAGSREAARGRR
+PEGGERA
+>KBS0714_MOLHKGIG_01888
+MM-TVDLALLLAMGVMFAGGIYLVLERSLTRILLGIVLINNGAIMLLFLSSGGTGLAPLF
+VRGRDPHEYADTLPQALILTAIVIGFAVIAFLTAMIYRSWLLVREDEVEVDAEDVKIARM
+PAWDAEDDAELVEESSEFLDDAADPNAHYEHATESRPHVRHASPTPPAHPGPASAVRAHR
+ADGGPRP
+>KD337_NAFOICDF_00908
+MTPTVDLALLAVMGVLFATGIYLLLERSLTRILVGVMLINNAAVVLLFLTSGGAGLAPLY
+DADTAPEDYADMLPQALILTAIVIGFATTAFLTAMIYRSWQLRREDDVATDVEDVKIAAQ
+SGWDAEDDSVLTEEDSEFMDDASDPNAEYEFATAAAPRARAVRPGRATVQG---------
+--GGGRP
+>SA211_MHAAABBN_01584
+MM-TVDLALLLAMGVMFAGGIYLVLERSLTRILLGIMLINNGAIMLLFLASGGVGLAPLF
+VRGRDPHEYADTLPQALILTAIVIGFAVVAFLTAMIYRSWLLVREDEVEVDAEDVKIARM
+PAWDAEDDAELVEESSEFLDDAADPNAHYEHATEARPQVQHATPAPQAPTGSGAASRGRR
+PEGGERA
+>TT9_LFPAFLNI_01808
+MM-TVDLALLLAMGVMFAGGIYLVLERSLTRILLGIVLINNGAIMLLFLSSGGTGLAPLF
+VRGRDPHEYADTLPQALILTAIVIGFAVVAFLTAMIYRSWLLVREDEVEVDAEDVKIARM
+PAWDAEDDAELVEESSEFLDDAADPNAHYEHATEARPQVQHATPAPQAPTGSGAASRGRR
+PEGGERA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000635.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000635.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e990b8ade2f2e3e8df1873e71799d43936145e8c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000635.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00971
+MSIGSVPMTDLAPLAVMMPVLGAAVTFMLVRRPRAQVVVTVAALVLTLLLNCLLLAAVWEGGVASVHVGGWPAPLGITLV
+VDRLSALMLVVSALITLAVLLYASAQGMVNRDEGGPVSIFHPTFLILVAGVFNAFLAGDLFNLYVGFEILLTASYVLLTM
+GGTAQRIRAGITYVVVSVISSVVFLIAIAMVYAATGTVNMADLAVKLGELPSDVQMVLHVLLLVGFGIKAAVFPLSFWLP
+DSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPGEHVNALLLVVAALTMVVGILGALAQTDIKRILSFILVSHIGYMI
+FGLGLATQMGLAATVFYVGHHITVQTALFLVTGLIENRAGTANIDRLGSLAKVSPFISVLFLIPALNLGGIPPFSGFLGK
+VGLLRGGVEQGTGLSYTLVGVSLLASLLTLLVVVRVWTRAFWRKVEDVEHPPAQLVAAYERTIDRGLRPRRLEPGLVLPT
+AALVVMTLAFTVLAGPLFDLADAAATDMLDRTPYIASVLDEAAAERAAETLSHDPTEVHDARH
+>KBS0714_MOLHKGIG_01887
+MSIGTLPLTDLAPLAVMLPVLGAAVTFMLVRRPRAQITVTVSALVLTLVLDALLLAAVWDTGVAAVHLGGWPAPLGISLV
+VDRLSALMLVVSALITLAVLLYASAQGLINRDEGGPVSIFHPTFLILVAGVSNAFLAGDLFNLYVGFEILLTSSYVLLTM
+GGTAQRIRAGVTYVVVSVLSSVVFLIAIAMIYAATGTVNMADLAVKLGELPTDVQMVLHVLLLVGFGIKAAVFPLSFWLP
+DSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPGEHVNALLLVVAALTMVVGILGALAQTDIKRILSFILVSHIGYMI
+FGLGLATEAGLAATVYYVAHHITVQTALFLVTGLIENRAGTANIDRLGSLAKVSPFVSVLFLVPALNLGGIPPFSGFLGK
+VGLLRGGVEQATPLAYTLVGVSLLVSLLTLLVVVRVWTRAFWRRVEDVEHPPAQLVAAYERAVARGERPRPLEPGLVLPT
+TALVGLTLVFTVAAGPLFALADEAATDMLDRSPYIAAVLDDAAAERAAATLSVDPTEVHDARK
+>KD337_NAFOICDF_00909
+M-LGSTPLTDLAPLAVMLPVLGAAITFALVGRARAQVVVTVSALTLTLVLDCLLLADVWTGGVAVVELAAWPAPVGITMV
+VDRLSALLLVVSSLITLAVLLYASAQGLINKDEGGPVSIFHPTFLVLVAGVSNAFLAGDLFNLYVGFEILLTASYVLLTL
+GGTEARIRAGITYVVVSVISSVLFLIAIAMIYAATGTVNMADLAVKLGELPHDLQLVLHVMLLAGFGIKAAVFPLSFWLP
+DSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPAEHVNGLLMGVAALTMLVGILGALAQSGLKRILSFILVSHIGYMV
+FGLALATQVGLAATVYYVGHHITVQTALFLVTGLIEQRAGTASIDRLGSLAKVSPLLGVLFLVPALNLGGIPPFSGFLGK
+VGLIRGGVEDGGVLAWVLVGVSLLVSLLTLLVLVRAYTRAFWRKVEDVEHPTPQLVAAYERVTRRGLRPKPLSRGLVLPT
+AGLVAMTLAFTVFAGPLYDLADRAAVDMLERSPYISAVLGPEAADRAAVTLSHDPSEVHDAGR
+>SA211_MHAAABBN_01583
+MSIGSVPLTDLAPLAVMLPVLGAAVTFMLVRRPRAQITVTVSALVLTLVLDALLLAAVWDTGVAAVHLGGWPAPLGISLV
+VDRLSALMLVVSALITLAVLLYASAQGLINRDEGGPVSIFHPTFLILVAGVSNAFLAGDLFNLYVGFEILLTSSYVLLTM
+GGTAQRIRAGITYVVVSVLSSVVFLIAIAMIYAATGTVNMADLAVKLGELPTDVQMVLHVLLLVGFGIKAAVFPLSFWLP
+DSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPGEHVNALLLVVAALTMVVGILGALAQTDIKRILSFILVSHIGYMI
+FGLGLATEAGLAATVYYVAHHITVQTTLFLVTGLIENRAGTANIDRLGSLAKVSPFVSVLFLVPALNLGGIPPFSGFLGK
+VGLLRGGVEQATPLAYTLVGVSLLVSLLTLLVVVRVWTRAFWRRVEDLEHPPAQLVAAYERAVARGERPRPLEPGLVLPT
+TALVGLTLVFTVAAGPLFALADEAATDMLDRSPYIAAVLDDAAAERAAATLSVDPTEVHDARK
+>TT9_LFPAFLNI_01807
+MSIGTLPLTDLAPLAVMLPVLGAAVTFMLVRRPRAQITVTVSALVLTLVLDALLLAAVWDTGVAAVHLGGWPAPLGISLV
+VDRLSALMLVVSALITLAVLLYASAQGLINRDEGGPVSIFHPTFLILVAGVSNAFLAGDLFNLYVGFEILLTSSYVLLTM
+GGTAQRIRAGVTYVVVSVLSSVVFLIAIAMIYAATGTVNMADLAVKLGELPTDVQMVLHVLLLVGFGIKAAVFPLSFWLP
+DSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPGEHVNALLLVVAALTMVVGILGALAQTDIKRILSFILVSHIGYMI
+FGLGLATEAGLAATVYYVAHHITVQTALFLVTGLIENRAGTANIDRLGSLAKVSPFVSVLFLVPALNLGGIPPFSGFLGK
+VGLLRGGVEQATPLAYTLVGVSLLVSLLTLLVVVRVWTRAFWRRVEDVEHPPAQLVAAYERAVARGERPRPLEPGLVLPT
+TALVGLTLVFTVAAGPLFALADEAATDMLDRSPYIAAVLDDAAAERAAATLSVDPTEVHDARK
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000643.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000643.fa
new file mode 100644
index 0000000000000000000000000000000000000000..22f2445dc1cb97cfa32ccf5fd7d13ef7b1beb556
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000643.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_00983
+MSRAVGIDLGTTNSVVAALEGGDPVVIANAEGARTTPSVVAFSKGGDVLVGEVAKRQAVNNPERTYASVKRHMGTDWTTE
+VDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPAYFNDAERQATKEAGEIAGLNVTRIINEPTAAALAYGLEKG
+KEDELILVFDLGGGTFDVSLLEVAKDEDDFATIQVRATAGDNRLGGDDWDQRIVDWLLQQAKSKGADLSKDKIALQRLKE
+AAEQAKKELSSATSTSISLQYLSVTPEGPVHLDEHLSRAKFQDLTKDLLERTRKPFEDVIKEAGVKVSDIDHVVLVGGST
+RMPAVSDLVKELTGGKEPNKSVNPDEVVAIGAAVQAGVLAGERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRS
+ETFTTAEDNQPSVSIQVFQGEREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITG
+GSSLSKEDIDRMVKDAEAHADEDKKRREAADRRNQAEQSAYSVDKLLQDNADKLPEDVKTEVQADVDALKAALEKQDNDD
+EVAAAFEKLQASQVKIGEALYAQQGAESADAGAESAAPQGDDEDIVDAEVVDEDDEKKA
+>KBS0714_MOLHKGIG_01876
+MSRAVGIDLGTTNSVVAALEGGDPVVIANAEGARTTPSVVAFSKGGDVLVGEVAKRQAVNNPERTFASVKRHMGTDWTAE
+VDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPAYFNDAERQATKEAGEIAGLNVTRIINEPTAAALAYGLEKG
+KEDELILVFDLGGGTFDVSLLEVAKDEDDFATIQVRATAGDNRLGGDDWDQRIVDWLLQQAKSKGADLSKDKIALQRLKE
+AAEQAKKELSSATSTNISLQYLSVTPEGPVHLDEHLSRAKFQDLTKDLLERTRKPFEDVIKEAGVKVSDIDHVILVGGST
+RMPAVSDLVKELTGGKEPNKGVNPDEVVAIGAAVQAGVLAGERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRS
+ETFTTAEDNQPSVSIQVFQGEREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITG
+GSSLSKEDIDRMVKDAEAHADEDRKRREAADRRNQAEQSAYSVERLLQDNADKLPEDVKTEVQADVDALKAALEKQDNDD
+EVAAAFEKLQASQVKIGEALYAQQGAESADAGAESAAPQGDDEDIVDAEVVDEDDEKKA
+>KD337_NAFOICDF_00921
+MSRAVGIDLGTTNSVVAVLEGGDPVVIANAEGARTTPSVVAFSKGGEVLVGEVAKRQAVNNPDRTYASVKRHMGTDWTTE
+VDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPAYFNDAERQATKEAGEIAGLNVKRIINEPTAAALAYGLEKG
+KEDELILVFDLGGGTFDVSLLEVAKDEDDFATIQVRATSGDNRLGGDDWDQRIVDWLLQQAKSKGADLSNDKIALQRLKE
+AAEQAKKELSSATSTNISLQYLSVTPEGPVHLDEHLSRAKFQDLTKDLLERTRKPFNDVIKEAGVKVSDIDHVVLVGGST
+RMPAVSELVKELTGGKEPNKGVNPDEVVAIGASVQAGVLAGERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRS
+ETFTTAEDNQPSVSIQVFQGEREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITG
+GSSLSKEDIDRMVKDAESHAEEDKARREAAERRNQAEQSAYSVDKLLADNADKLPEDVTTEVQADVDALKAALEKQDNDD
+EVKAAFEKLQASQVKIGEALYAQQSAEGAQPDAESGSAQA-DEDIVDAEVVEDEDEKKN
+>SA211_MHAAABBN_01572
+MSRAVGIDLGTTNSVVAVLEGGDPVVIANAEGARTTPSVVAFSKGGDVLVGEVAKRQAVNNPERTYASVKRHMGTDWTTE
+VDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPAYFNDAERQATKEAGEIAGLNVKRIINEPTAAALAYGLEKG
+KEDELILVFDLGGGTFDVSLLEVAKDEDDFATIQVRATAGDNRLGGDDWDQRIVDWLLQQAKSKGADLSKDKIALQRLKE
+AAEQAKKELSSATSTSISLQYLSVTPEGPVHLDEHLSRAKFEDLTKDLLERTRKPFEDVIKEAGVKVSDIDHVILVGGST
+RMPAVSDLVKELTGGKEPNKSVNPDEVVAIGAAVQAGVLAGERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRS
+ETFTTAEDNQPSVSIQVFQGEREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITG
+GSSLSQEDIDRMVKDAEAHADEDKKRREAADRRNQAEQSAYSVERLLQDNGDKLPEDVKTEVQADVDALKAALEKQDNDD
+EVAAAFEKLQASQVKIGEALYAQQGAESADAGAESAAPQGDDEDIVDAEVVDEDDEKKA
+>TT9_LFPAFLNI_01796
+MSRAVGIDLGTTNSVVAVLEGGDPVVIANAEGARTTPSVVAFSKGGDVLVGEVAKRQAVNNPERTFASIKRHMGTDWTTE
+VDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPAYFNDAERQATKEAGEIAGLNVKRIINEPTAAALAYGLEKG
+KEDELILVFDLGGGTFDVSLLEVAKDEDDFATIQVRATAGDNRLGGDDWDQRIVDWLLQQAKSKGADLSKDKIALQRLKE
+AAEQAKKELSSATSTNISLQYLSVTPEGPVHLDEHLSRAKFQDLTKDLLERTRKPFEDVIKEAGVKVSDIDHVILVGGST
+RMPAVSELVKELTGGKEPNKSVNPDEVVAIGAAVQAGVLAGERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRS
+ETFTTAEDNQPSVSIQVFQGEREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITG
+GSSLSQEDIDRMVKDAEAHADEDKKRREAADRRNQAEQSAYSVEKLLQDNGDKLPEDVKTEVQADVDALKAALEKQDNDD
+EVAAAFEKLQASQVKIGEALYAQQGAESADAGAESAAPQGDDEDIVDAEVVDEDDEKKA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000645.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000645.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5b1f412f9a31a462ef9a5c3f8f5a361535cad331
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000645.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00986
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----MSLRAADGETIEVKIPKGIRDGQKVRARGKGAPGAAGRGDLLVTVHVREHEFFRR
+DGDDLRITVPVTFPEAALGATIEVPTLERPVKMKVPAGSQSGRVLRLKGRGVERGTTKGD
+LLVELHVTVPTELNDDARAAVEALQSALAGDDPRRELARKAAW
+>KBS0714_MOLHKGIG_01874
+MASQDWMDKDFYATLGVSKDASDADVKKAYRKLARMYHPDQNPGDEAAEKKFKEISEAYA
+VLSDPQERQEYDAIRAMGGGARFSAP-------GGAGGGGFEDVFGGMFGGGGGPRA---
+--TQSEPDLSDLFSGMFSGAAGQPGGFGPG-GFGDAGYARPRPTKGADRTATTTISFRGS
+IQGTTVSLRGPDGETIEVKIPKGIRDGQKVRARGKGSPGPAGRGDLLVTVHVREHEFFRR
+DGDDLRITVPITFPEAALGATIEVPTLERPVKVKVPAGSQCGRVLRLKGRGVERGKTTGD
+LLVELRVTVPTTLNDDARAAVEALQSATAGDDPRRELARKAAW
+>KD337_NAFOICDF_00923
+MASQDWLEKDFYQVLGVSKDASESDIKKAYRTLARKHHPDQNPGDAAAEQRFKEISEAYD
+VLSDPKDRQEYDAIRSMGGGARFGAPGGFGGAGGGAGAGGFEDVFGGMFGGGGGSRTFRT
+GGAQGGPDLSDLL-GAFTG--GGAGGFGGGQGFGGGGFGQPAPTKGADRTATTTISFRGA
+VEGTTVSLRAADGETVDVRIPKGVKDGQKVRARGKGSPGTAGRGDLIVTVQVREHPFFQR
+DGDDLRITVPVTFAEAALGATVEVPTLDRPVKVKVPAGSQSGRVLRLKGRGVAGAKHTGD
+LLVELQVAVPAELSAEARGAVEAYAAATAGDDVREGLAGKAQW
+>SA211_MHAAABBN_01570
+MASQDWMDKDFYATLGVSKDASDADVKKAYRKLARTHHPDQNPGDEAAEKKFKEISEAYA
+VLSDPQERQEYDAIRAMGGGARFSAP-------GGAGGGGFEDVFGGMFGGGGGPRT---
+--TQSEPDLSDLFSGMFSGAAGQPGGFGPG-GFGDAGYARPRPTKGADRTATTTISFRGS
+IQGTTVSLRGPDGETIEVKIPKGIRDGQKVRARGKGSPGPAGRGDLLVTVHVREHEFFRR
+DGDDLRITVPITFPEAALGATIEVPTLDRSVKVKVPAGSQCGRVLRLKGRGVERGTTTGD
+LLVELRVTVPTTLNDDARAAVEALQSATAGDYPRRELARKAAW
+>TT9_LFPAFLNI_01794
+MASQDWMDKDFYATLGVSKDASESDVKKAYRKLARTHHPDQNPGDEAAEKKFKEISEAYA
+VLSDPQERQEYDAIRAMGGGARFSAP-------GGAGGGGFEDVFGGMFGGGGGPRT---
+--TQSGPDLSDLFSGMFGGAAGQ-----TG-GFGDAGYPRPRPTKGADRTATTTISFRGS
+IQGTTVSLRAPDGETIEVKIPKGIRDGQKVRARGKGSPGAAGRGDLLVTVHVREHEFFHR
+DGDDLRITVPVTFPEAALGATIEVPTLERPVKVKVPAGSQSGRVLRLKGRGVERGTTTGD
+LLVELHVTVPTELDDDARAAIEALQSALAGDDPRRELARKAAW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000646.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000646.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bae0a1a806fc96fe9d4ec0c09d8a12323448ad4c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000646.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00987
+MSA------RDGAARADRGRERGLDRNAPVFVVSVAAEMADMHPQTLRQYDRLGLVVPAR
+QGGRHRRYSLADVERLQTVQALSREGISLEGIRRVIALQREVEQLQDTVVELAAQVDRLH
+HASRLARVFTVGSGGDVSARYADRMAARRQAAAR-----TEADAAGQASPGVLRMLPSGG
+ARPRRVLTWQPE-QD
+>KBS0714_MOLHKGIG_01873
+MSA------RDGAARADRGREGGPDRHAPVFVISVAAEMADMHPQTLRQYDRLGLVVPAR
+QDGRHRRYSLADVERLQTVQTLSREGISLEGIRRVIALQREVEQLQDTVVELAAQVDRLH
+HASRLARVFTVGSGGDVSARYADRMAVRRHAAAR-----AGADTAGEACPSGLRRLPSGV
+AGLRRVPTWQSE-QD
+>KD337_NAFOICDF_00924
+MVSGVAGEHPTGAGRL-RGTAGRPGRHDPVFVISVAAEMAGMHPQTLRQYDRLGLVVPQR
+QGGRHRRYSAADVEHLRAVQRLSREGVSLEGIRRILDLQREVERLQDTVVELASQVDRLH
+SASALARVFSVGLAGDVSARYAAPAAHRAAEAVQGQRRPGEGATRSAARGGLLRALPAGR
+AAAPRGLTRLPAPRD
+>SA211_MHAAABBN_01569
+MSA------RDGAARADRGREGGPDRHAPVFVISVAAEMADMHPQTLRQYDRLGLVVPAR
+QDGRHRRYSLADVERLQTVQTLSREGISLEGIRRVIALQREVEQLQDTVVELAAQVDRLH
+HASRLARVFTVGSGGDVSARYADRMAVRRHAAAR-----AGADTAGEACPSGLRRLPSGV
+AGLRRVPTWQSE-QD
+>TT9_LFPAFLNI_01793
+MSA------RDGAARADRGREPGLDRNAPVFVISVAAEMADMHPQTLRQYDRLGLVVPAR
+QGGRQRRYSLADVERLQTVQALSREGISLEGIRRVIALQREVEQLQDTVVELAAQVDRLH
+HASRLARVFTVGSGGDVSARYADRMAARRQAAAR-----TEADAAGQASPGVLRMLPSGG
+ARPRRVLTWQPE-QD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000651.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000651.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b1572bceb8eec700d13f6aacb7afa2ecbb3280ad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000651.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_00992
+MSIVQIPLRLASGAFILNSGLNKRNISEEQAAGMRDMGAQGVPYLAKLTPAQFKNFIVAT
+EVGTGAALLAPFVPGWLAGSALTAFSGGLMSMYLNTPAMTEKDGVRPSQEGTGVAKDVFL
+VGSGLAIAADSVANRSGKRRKAAKKRAARIGNARDAKVQAIRDAQDEKVAAIHAARDEQV
+AALREAREELKKLRQKA
+>KBS0714_MOLHKGIG_01868
+MSIVQIPLRLASGAFILNSGLNKRGISAEQAQGLRDMGARGLPALANLSPEQFKKFLVTT
+EIGVGSALLAPFVPGWLAGSALTAFSGGLFSMYLNTPEMTEADGVRPSQEGTGVAKDIFL
+VGSGLAIAADSVANRPGKRRKAAKKRAARIEGARDAKVQAIRDAQDEKVAAIHAAREEQV
+AALREARDELKKLRKKA
+>KD337_NAFOICDF_00930
+MSIIQIPLRLTSGAFILNSGLGKRKLGEEQAAYLQNMAAKGVPSLAKLSPSQFKNFITAT
+EIGTGAALLAPFVPGWLAGSALTAFSGGLMSMYLNTPEMTEADGVRPSQDGTAVAKDVFL
+LGAGLAVTADSVVNRPGKRKKAAKKRAARISDARDAKVDAIRAAQDEKVAAIHEAREQQV
+AALREARQELAKLRKKA
+>SA211_MHAAABBN_01564
+MSIVQIPLRLASGAFILNSGLNKRGISAEQAQGLRDMGARGLPALANLSPEQFKKFLVTT
+EVGVGAALLAPFVPGWLAGSALTAFSGGLFSMYLNTPEMTEADGVRPSQEGTGVAKDIFL
+VGSGLAITADSVANRPGKRRKAAKKRAARIEGARDAKVQAIRDAQDEKVAAIHAAREEQV
+AALREARDELKKLRKKA
+>TT9_LFPAFLNI_01788
+MSIVQIPLRLASGAFILNSGLNKRGISAEQAQGLRDMSARGLPALANLSPEQFKKFLVTT
+EIGVGSALLAPFVPGWLAGSALTAFSGGLFSMYLNTPEMTEADGVRPSQEGTAVAKDIFL
+VGSGLAIAADSVANRPGKRRKAAKKRAARIEGARDAKVQAIRDAQDEKVAAIHAAREEQV
+AALREARDELKKLRKKA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000652.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000652.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2a951d66e2ab6273c498ded25aa465050cda93a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000652.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00993
+MAQQTPQP----AASAVDAAGVHVADLNKSYGSNHVLRGIDLDVAPGEVVCLIGPSGSGK
+STLLRCVNLLEKPDSGRITVGEFDVTDEDVDLDALRRHVGMVFQQFNLFPHLSVLENCTV
+AQVKVLKRSKAEAAEVARRQLARVGLAELEDRFPDQLSGGQQQRVAIARALAMDPQLMLF
+DEPTSALDPETVGEVLAIMRQLARDGMTMLVVTHEMGFAREVADRVVSMDAGVVVETGPA
+AALIADPQQPRTQDFLRRVLHPTEIDL
+>KBS0714_MOLHKGIG_01867
+MAQQNPITGSFGAVAAADAAGVHVAGLNKSFGANHVLRGIDLDVAPGEVVCLIGPSGSGK
+STLLRCVNLLEKPDSGVVTVGEFTVTDEDVDLDVLRRHVGMVFQQFNLFPHLSVLENCTV
+AQLKVLKRGKAEAVDIARRQLARVGLAELEDRYPDQLSGGQQQRVAIARALAMDPQLMLF
+DEPTSALDPETVGDVLAIMRQLARDGMTMLVVTHEMGFAREVADRVVFMDGGVVVEAGPA
+AAVISDPQQPRTQDFLRRVLHPTEIDL
+>KD337_NAFOICDF_00931
+MTEQTASP---RPSDAGTAAGVHIAGLHKSYGSNHVLRGIDLDVAPGEVVCLIGPSGSGK
+STLLRCVNLLEVPDSGGVQVGEFTVTDPDVDLDRLRQHVGMVFQQFNLFPHLTVLENCTV
+AQVKVLKRSAAEAADTARRQLARVGLGELEGRYPDQLSGGQQQRVAIARALSMDPRLMLF
+DEPTSALDPETVGDVLAIMRKLAREGMTMLVVTHEMGFAREVADRVVFMDGGVVVEQGPA
+SAVITDPQEPRTQDFLRRVLNPAGVDI
+>SA211_MHAAABBN_01563
+MAQQNPITGSFGAVAAADAAGVHVAGLNKSFGANHVLRGIDLDVAPGEVVCLIGPSGSGK
+STLLRCVNLLEKPDSGVVTVGEFTVTDEDVDLDVLRRHVGMVFQQFNLFPHLSVLENCTV
+AQLKVLKRGKAEAVDVARRQLARVGLAELEDRYPDQLSGGQQQRVAIARALAMDPQLMLF
+DEPTSALDPETVGDVLAIMRQLARDGMTMLVVTHEMGFAREVADRVVFMDGGVVVEAGPA
+AAVISDPQQPRTQDFLRRVLHPTEIDL
+>TT9_LFPAFLNI_01787
+MAQQNPITGSFGAVAAADAAGVHVAGLNKSFGANHVLRGIDLDVAPGEVVCLIGPSGSGK
+STLLRCVNLLEKPDSGVVTVGEFTVTDEDVDLDVLRRHVGMVFQQFNLFPHLSVLENCTV
+AQLKVLKRGKAEAVDVARRQLARVGLAELEDRYPDQLSGGQQQRVAIARALAMDPQLMLF
+DEPTSALDPETVGDVLGIMRQLARDGMTMLVVTHEMGFAREVADRVVFMDGGVVVEAGPA
+AAVISDPQQPRTQDFLRRVLHPTEIDL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000654.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000654.fa
new file mode 100644
index 0000000000000000000000000000000000000000..831b29497b9ceab4a32de37dbbb32c816e65ee01
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000654.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_00995
+-----------MGLTASAALLTGCAVLGGDSGVAGVVSDDDLSTTYNLVQPGVLTVCSDI
+PYPPFEFELDGELTGYDIQLVHAIAEELELGVNVIDSSFEAIESGASLTGCDLNASSISI
+TEQRQRAMAFTLPYLDDDLVLVAATDSGITDVESAKGRRVGVQAATTGDAYAKENGLNPI
+EFEDGGMQVQALQAGTVDALLGNQSVILYSLKDDERFEVVENLPTGEQLGMAVAPQNAQL
+GSAVNRALQQLRNDGTVAELQERWFGLAQEDYR
+>KBS0714_MOLHKGIG_01865
+MTRIHSRLLGAVGLTASAALLTGCAVLGGDAGSAGIVSDDDLSTSYGLVQPGVLTVCSDV
+PYPPFEFEENGELTGYDIQLVEAVAEKLGLGVNVIDSSFEAIESGASLTGCDVNASSISI
+TEARQRVMAFTLPYLDDDLVLVAKKGSGITDVDSAKGRRIGVQAATTGDEYAQQNGLSPV
+QFEDGGMQVQALQAGTVDAALGNQSVLLYSLKDDDRFEVVESLPTGEQLGMAVGPQKAQL
+GSAVNRALQELRNDGTVAELQERWFGQAQEDYR
+>KD337_NAFOICDF_00933
+MPRTPSRALGAVGAGLSAALLSGCAVIGGDAGTTGPLAEDDLRATYRLHEPGVLTVCADV
+PYPPFEFEQDGQLTGYDIDLTRKLAETMDLQLKVVDTSFEAIESGASLTGCDLNASAISI
+TEPRQHVMAFTLPYLDDDLVLVARKDSGITDVASAQGKRVGVQTATTGEEYAQSQGLDTV
+QFEDGGMQVQALQAGTVDALLGNQSVLLYSLKDDPRFGVVESLPTGEQLGMGVAPDNALL
+GSAVNRALQTLRNDGTVAELQQKWFGTAQKDYQ
+>SA211_MHAAABBN_01561
+MTRIHSRLLGAVGLTASAALLTGCAVLGGDAGSAGIVSDDDLSTSYGLVQPGVLTVCSDI
+PYPPFEFEEKGELTGYDIQLVEAVAEKLGLGVNVIDSSFEAIESGASLTGCDVNASSISI
+TEARQRVMAFTLPYLDDDLVLVAKKGSGITDVDSAKGRRIGVQAATTGDEYAQQNGLSPV
+QFEDGGMQVQALQAGTVDAALGNQSVLLYSLKDDDRFEVVESLPTGEQLGMAVGPQKAQL
+GSAVNRALQELRNDGTVAELQERWFGQAQEDYR
+>TT9_LFPAFLNI_01785
+MTRIHSRLLGTVGLTASAALLTGCAVLGGDAGSAGIVSDDDLSTSYGLVQPGVLTVCSDV
+PYPPFEFEENGELTGYDIQLVEAVAEKLGLGVNVIDSSFEAIESGASLTGCDVNASSISI
+TEARQRVMAFTLPYLDDDLVLVAKKGSGITDVDSAKGRRIGVQAATTGDEYAQQNGLSPV
+QFEDGGMQVQALQAGTVDAALGNQSVLLYSLKDDDRFEVVELLPTGEQLGMAVGPQKAQL
+GSAVNRALQELRNDGTVAELQERWFGQAQEDYR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000655.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000655.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4bfa4a697cd1b415b0ac7fe49a7eb2e46be0921c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000655.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00996
+------------------------------------------------------------
+-----------------------------------------------------MEALEDV
+LLTPQTAPDGVFTDMETQAGGGGEPISTSLSLTGVTPTGACADLIEQINTQQAPGLGGAL
+AQYEVDPDAVTGLAGSQAGAFGMVAVTEGGTDLLAPFGELADTCGTFGDPDGVEAAFTKV
+PGVPDAAHIALGNSGMDTALFTMTVGGVTDGDELVYLGMVGLDEEIAAETLRAQVEAFEK
+RER
+>KBS0714_MOLHKGIG_01864
+------------------------------------------------------------
+----------MGALALVGCAGGGGEASSS-SADASKSAPTGAGSDLTDEQEERVEALEDV
+LLTPETAPGGVFTGMETQA-GGGEPISTSLSLTGVTPTGACADLIEQINTQQAPGLGGAL
+AQYEVDPAAVTGLAGSQAGAFGMVAVTDDGTDLLAPFGKLADTCGTFGDPDGVEAAFTKV
+PGVPDAAHIALGNSGMDTALFTMTVGGVTDGDELVYLGMVGLDEEIAAETLRAQVEAFEA
+RER
+>KD337_NAFOICDF_00935
+MSRTATSRPRLRALLPLTATAALLASGCAAPGPAASSSATPSSSASSAAAESSSSPTVST
+GPASSSDAS-SSAAAASSSADASATTSSSSAADLAASSPAAGGASVEN-------PLEPL
+LLLATAAPQEVFSSRTVQS-GADQPLTMSLTLTGVTPTGRCQELVDEINATHEPMDVASL
+ATYQVNPAS-PAVVDQETGAFTMIGTSTAPADLMAPYGELVSACGTLEGEQGQKAEFTAV
+PGVPDAATVTMTTPGQSRKL-VMTVGGASEGRDHVYMLMLGLDADVSQQVLADQVAAFQE
+R--
+>SA211_MHAAABBN_01560
+------------------------------------------------------------
+----------MGAHALVGCAGGGGEASSSASADASESGPTGAGSDLTDEQEERVEALEDV
+LLTPQTAPDGVFTGMETQA-GGGEPISTSLSLTGVTPTGACADLIEQINTQQAPGLGGAL
+AQYEVDPAAVTGLAGSQAGAFGMVAVTEDGTDLLEPFGELADTCGTFGDPDGVEAAFTTV
+PGVPDAVHISLGNSGMDTALFTMIVGGVTDGDELVYLGMVGLDEEIAAETLRAQVEAFEK
+RER
+>TT9_LFPAFLNI_01784
+MLR----------------------------------------------------PAAPA
+RPAVALSLLAVGALALVGCGGGGGEASSS-SADASESAPTGAGSDLTDEQEERVEALEDV
+LLTPETAPGGVFTGMETQA-GGGEPISTSLSLTGVTPTGACADLIEQINTQQAPGLGGAL
+AQYEVDPAAVTGLAGSQAGAFGMVAVTDDGTDLLAPFGKLADTCGTFGDPDGVQAAFTKV
+PGVPDAVHIALGNSGMDTALFTMTVGGVTDGDELVYLGMVGLDEEIAAETLRAQVEAFEA
+RER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000656.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000656.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7b0b7437dcdf74dca578a1c92d723e44fee027a1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000656.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00997
+-----MSGSTAAPRRLRTYARPRVSLLYVLRRTTHRLLELQVWDVAAAMTFFAALSLLPT
+VVALVSLVSLLGVQEETVDAAAQLATEIWPSLTPDTVREWILTLGSAGTGTAAVVLGILG
+AVVSASGAVGAFHRAMHRIHDTREGRPFLQFRLVLLVETLALMVGIVLVVILVVLGGDLS
+LRIGQAVGLPEETVLTWNVVKWPVILVVIALTVTLAYRLGPNVVPPRYRPLSAGAVSVVV
+LLFAATLALGWITDRFGQFAVVGRINSAIGVLVLAWIACIVLLAGAALDAEMLRGRQLAV
+GVDAASEIQLATRHTVVLEAAERHEDRSRRLARLVAEAVREDEDLSIDATPLLSQEGRMF
+AIGSARRTAAEVSSGRPFHAAPVLDDGARLEPTSRPDD
+>KBS0714_MOLHKGIG_01863
+-----MAGSTAAPRRLRTYTRPRVSLLYVLRRTLHRLFELQVWDVAAAMTFFGALSLLPT
+VIALLSVVSLLGVEEETVDAAAHLAAEIWPSLTPDVVREWILTLGSAGPGTGAVVLGAVG
+TVVSASGAVGAFHRAMHRIHDTREGRPFLHFRLVVFVETLALMLGAVLITILVVVGGDLS
+LRLGQAVGLPEETVQTWNVVKWPVILVVIALIVTLAYRLGPNVRQPRYRPLSLGAVAVVV
+LLFGATVALGWITDRFGQFAVVGRINSAIGVLALAWVACIVLLAGAAFDAEVLRARQLAV
+GIDASVEIQLATRHTAVLEASERYEARNRRLARLVADAVRAGEDLTIEATPLLSEEGRLL
+AVESGRRDPEDVSSGSPFHADPVSHDGARLEPTPRPDD
+>KD337_NAFOICDF_00936
+MPSSPVPDASTGGRAPRTYARPRASLLYVLERTWTRLVGMQVWDVAAAMTFFAVLSLLPT
+LVALVSLVSLLGVEARTVETAARLATEVWPSLDAAEVSAWILNAGRTATGTPGLVLGAAG
+AVVSASGAVGAFHRAMHRIYDTREGRPFLVYRLVVLLETLALIVGAALVMSLMVLGGDLS
+ERLGRLLGVGRGAVAVWNASTWPMILVLLALIVSVAYRRGPNVRPPCHRPFSLGAVGAVA
+LLFAAALALGWIVARFGGLALVGRLNSALGVLGLAWAACIVLVAGAAFDAEMLRARQLAV
+GVESADELQLATRDTWVLRQVERQEARHLRVGRLVAEAVRTEEPVTTPATRLLAEAGSLF
+AVDAAGRSASDLTSGRPFHAVPPAD---------RAGV
+>SA211_MHAAABBN_01559
+-----MAGSTAAPRRLRTYTRPRVSLLYVLRRTLHRLFELQVWDVAAAMTFFGALSLLPT
+VVALLSVVSLLGVEEETVDAAAHLAAEIWPSLTPDVVREWILTLGSAGPGTGAVVLGAVG
+TVVSASGAVGAFHRAMHRIHDTREGRPFLHFRLVVFVETLALMLGAVLITILVVVGGDLS
+QRLGQAVGLPEETVQTWNVVKWPVILVVIALIVTLAYRLGPNVRQPRYRPLSLGAVAVVV
+LLFGATVALGWITDRFGQFAVVGRINSAIGVLALAWVACIVLLAGAAFDAEVLRARQLAV
+GIDASVEIQLATRHTAVLEDFERYEARIRRLARLVAEAVRAGESLTIEATPLLSEEGRLL
+AVESGGRGPEDVSSGSPFHADPVSDDGARLEPTPRPDD
+>TT9_LFPAFLNI_01783
+-----MAGSTAAPRRLRTYTRPRVSLLYVLRRTLHRLFELQVWDVAAAMTFFGALSLLPT
+VIALLSVVSLLGVEEETVDAAAHLAAEIWPSLTPDVVREWILTLGSAGPGTGAVVLGAVG
+TVVSASGAVGAFHRAMHRIHDTREGRPFLHFRLVVFVETLALMLGAVLITILVVVGGDLS
+LRLGQAVGLPEETVQTWNVVKWPVILVVIALIVTLAYRLGPNVRQPRYRPLSLGAVAVVV
+LLFGATVALGWITDRFGQFAVVGRINSAIGVLALAWVACIVLLAGAAFDAEVLRARQLAV
+GIDASVEIQLATRHTAVLEASERYEARNRRLARLVADAVRAGEDLTIEATPLLSEEGRLL
+AVESGRRDPEDVSSGSPFHADPVSDDGARLEPTSRPDD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000657.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000657.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9217b42c7e3e3519282a4234240173f5a5d3574d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000657.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00998
+MD--AKFTTKSQEALSAAAMNASTAGNPQIEPAHLLKALMDQRESVAVAVLKAAGADPDAVSTAASSAIRRLPSTQGSTV
+AQAQLSRAALQVVQNARTQAEQRSDQFVSTEHLLLGVAADPGEAGEALRSNGASLEALAAALTQVRGDSRVTTQDPENTF
+QSLEKYGTDLTEVARSGKLDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRMVAGDVPESLRGKTLI
+SLDLGAMVAGAKYRGEFEERLKAVLEEIKAAEGQVVTFIDEIHTVVGAGASEGAMDAGNMLKPMLARGELRLIGATTLDE
+YRENIEKDPALERRFQQVYVGEPSVDDTIAILRGLKERYEAHHKVAIADSALVAAATLSHRYITGRQLPDKAIDLVDEAA
+SRLRMEIDSAPEEIDVLRRQVDRLTMEELALEGETDPSSVERLEALRAEKADREEELTALTARWDAEKATLNEAGDLRAK
+VDELRSLAEKAQRDGDLAEASRLLYGEIPALEKQLEEADRAAREADRSTTEPMVSEEVTADDIAEVVSAWTGIPAGRMLT
+AESEKLLTMEEHLGERLIGQRDAVVAVADAVRRSRAGIADPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRID
+MSEYAEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVI
+LILTSNLGSQFLVDPTLDEAAKRESVMSVVRAAFKPEFLNRLDEIVQFDALTVAELTRIVDLQVESLQARLTDRRLTLEV
+SDAAKAWLAETGFDPAYGARPLRRLVQREIGDRLARGILAGEIADGDTVVVDRA--EGEEGLTVASA--
+>KBS0714_MOLHKGIG_01862
+MD--AKFTTKSQEALSAAAMNASTAGNPQVEPAHLLKALMDQRESVAVAVLKAAGADPDAVSTAASSAIRRLPSTQGSTV
+AQPQFSRAALQVVQNARTQAEQRSDEFVSTEHLLLGVAADSGEAGEALRSNGASLEALAAALTLVRGDSRVTTQDPETTF
+QSLEKYGTDLTEIARSGKLDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRMVAGDVPESLRGKTLI
+SLDLGAMVAGAKYRGEFEERLKAVLEEIKAAEGQVVTFIDEIHTVVGAGASEGAMDAGNMLKPMLARGELRLIGATTLDE
+YRENIEKDPALERRFQQVFVGEPSVDDTIAILRGLKERYEAHHKVAIADSALVAAATLSHRYITGRQLPDKAIDLVDEAA
+SRLRMEIDSAPEEIDVLRRQVDRLTMEELALEGETDPASIERLDALRAEKADREEELTALTARWDAEKATLNQAGDLRAK
+VDELRSLAEKAQRDGDLAEASRLLYGEIPALEKQLEEADRAAREADRSATEPMVSEEVTADDIAEVVSAWTGIPAGRMLT
+AESEKLLTMEEHLGERLIGQRDAVVAVADAVRRSRAGIADPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRID
+MSEYAEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVI
+LILTSNLGSQFLVDPTLDEAAKRESVMSVVRGAFKPEFLNRLDEIVQFDALTVAELTRIVDLQVESLQARLTDRRLTLEV
+SDAAKAWLAATGFDPAYGARPLRRLVQREIGDRLARGILAGEIADGDTVVVDRV--EGENGLTVTRKG-
+>KD337_NAFOICDF_00945
+MNPSPQFTTKSQEALSAAAMNASTASNPAVEPAHLLKALMDQRDSVAVAVLKAAGADPDVVSVAASTAIHGLPKASGATV
+SEARLSPAAGAVVKAAQQQASAHGDEYVSTEHLLLGLAADGGEAGRALTDAGASLAALQAAFTQVRGDERVTTPDPEATF
+QSLEKYGTDLTAVARSGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRMVAGDVPESLRGKTLI
+SLDLGAMIAGAKYRGEFEERLKSVLEEIKKSDGQIVTFIDEIHTVVGAGASEGAMDAGNMLKPMLARGELRLIGATTLDE
+YRENIEKDPALERRFQQVYVGEPSVDDTIAILRGLKERYEAHHKVAIADSALVAAATLSDRYISGRQLPDKAIDLVDEAA
+SRLRMEIDSAPEEIDALRRQVDRITMEELALDGESDPGSVERLAGLRAEKADKEEELRALTARWEAEKASLNEAGDLRAR
+VDELRSLAEKAQRDGDLAEASRLLYGEIPALEKQLEEADRAAQEGQQGDVEAMVSENVTADDIAEVISAWTGIPAGRMLA
+SETEKLLSMEEHLGDRLIGQKDAVRAVSDAVRRARAGIADPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRID
+MSEYAEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVI
+LILTSNLGSQFLVDQTMPEQARKDAVMDVVRAAFKPEFLNRLDEIVTFDALGVEDLARIVDLQVASLGERLQQRRLTLDV
+TDAAREWLALTGYDPAYGARPLRRLVQREIGDQLARALLSGAVQDGDTVVVDRAGEDTADGLTVAARRA
+>SA211_MHAAABBN_01558
+MD--AKFTTKSQEALSAAAMNASTAGNPQIEPAHLLKALMDQRESVAVAVLKAAGADPDAVSTAASSAIQRLPSTQGSTV
+AQAQLSRAALQVVQNARTQAEQRSDQFVSTEHLLLGVAADPGEAGEALRSNGASLEALAAALTQVRGDSRVTTQDPETTF
+QSLEKYGTDLTELARSGKLDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRMVAGDVPESLRGKTLI
+SLDLGAMVAGAKYRGEFEERLKAVLEEIKAAEGQVVTFIDEIHTVVGAGASEGAMDAGNMLKPMLARGELRLIGATTLDE
+YRENIEKDPALERRFQQVYVGEPSVDDTIAILRGLKERYEAHHKVAIADSALVAAAALSDRYITGRQLPDKAIDLVDEAA
+SRLRMEIDSAPEEIDVLRRQVDRLTMEELALEGETDPASVERLEALRAEKADREEELTALTARWDAEKATLNEAGDLRAK
+VDELRSLAEKAQRDGDLAEASRLLYGEIPALEKQLEEADRAAREADRSSTEPMVSEEVTADDIAEVVSAWTGIPSGRMLT
+AESEKLLTMEEHLGERLIGQRDAVVAVADAVRRSRAGIADPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRID
+MSEYAEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVI
+LILTSNLGSQFLVDPTLDEAAKRESVMSVVRAAFKPEFLNRLDEIVLFDALTVDELTRIVDLQVESLQARLTDRRLTLEV
+SDAAKAWLAETGFDPAYGARPLRRLVQREIGDQLARGILAGEIADGDTVVVDRV--EGENGLTVTRKG-
+>TT9_LFPAFLNI_01782
+MD--AKFTTKSQEALSAAAMNASTAGNPQVEPAHLLKALMDQRESVAVAVLKAAGADPDAVSTAASSAIRRLPSTQGSTV
+AQPQFSRAALQVVQNARTQAEQRSDEFVSTEHLLLGVAADSGEAGEALRSNGASLEALAAALTLVRGDSRVTTQDPETTF
+QSLEKYGTDLTEIARSGKLDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRMVAGDVPESLRGKTLI
+SLDLGAMVAGAKYRGEFEERLKAVLEEIKAAEGQVVTFIDEIHTVVGAGASEGAMDAGNMLKPMLARGELRLIGATTLDE
+YRENIEKDPALERRFQQVFVGEPSVDDTIAILRGLKERYEAHHKVAIADSALVAAATLSHRYITGRQLPDKAIDLVDEAA
+SRLRMEIDSAPEEIDVLRRQVDRLTMEELALEGETDPASIERLDALRAEKADREEELTALTARWDAEKATLNQAGDLRAK
+VDELRSLAEKAQRDGDLAEASRLLYGEIPALEKQLEEADRAAREADRSATEPMVSEEVTADDIAEVVSAWTGIPAGRMLT
+AESEKLLTMEEHLGERLIGQRDAVVAVADAVRRSRAGIADPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRID
+MSEYAEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVI
+LILTSNLGSQFLVDPTLDEAAKRESVMSVVRGAFKPEFLNRLDEIVQFDALTVAELTRIVDLQVESLQARLTDRRLTLEV
+SDAAKAWLAATGFDPAYGARPLRRLVQREIGDRLARGILAGEIADGDTVVVDRV--EGENGLTVTRKG-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000658.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000658.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a82253e1a5899975f3932ed0bf1c7b59ac637025
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000658.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_00999
+--------------MSMRRRPALLAASVLAASLAVAPAAA---AIPGHAAGGPAPAASAAD--------RAGGNPNSPEK
+LVAAISAANLERDIRAFADIAEEHGNRAAGTPGYDASVDYAVAELEKAGYDVELEEFEITYTETLRNEFTQEGPVQRELP
+HEVLTYSPSAT---AESAQLAVPTG-ALGCTTADWGGADLTGRIAL-VSRGECPFAQKSTTAAELGAEAVVIY-NNADGP
+LNGTLGAPSDDY----VGTVGITRDLGQELVAQAAAGPVTVSLDLEQLVEQRPTVNI-LAETRTGRDD------NVVMVG
+AHLDGVPAGPGIHDNASGSAVTLEVARQMAKVNKTGNTVRFALWGAEEIGLLGAAHHVAELSQSERDAIAMYVNLDMVA-
+---PLDHQNTLGVLTGDFSLGAESFLQEQLERDGHEHGPAG--NGGNSDYAPFVAAGIPATGLLSYRDD------NYHTA
+QDDI-ENVSITSLTHSARAVANLVGTFMHDTSSVNDKCNAGKSGKPKQC
+>AS2_ACLBLIBL_01510
+M-------ST----SSLSRRSFLALAGA-----AGAAGAF---AMPAWGLDDVRPGAARAP--------RLTGQ---DRQ
+IINQIRPA---RAVDHLTLLTEEIGQRYTGTPAEHRAADYIAAQLEGYGYDVELEWFDVP---DRRVGLLEAPELDGRWS
+WGVGSAAAAAQDVTVAGRVVLAPSGSV----------ADLTGMVLMRVVTASEDITPLAVAAQARGAVAVIATRRDSNPP
+GQASAFAPALTTARLDIPVVGVSQVQKHALLGVLAAGPLRLTV---STVEHRGTRSANVVGTRAGRKGPGKGGRERVMLG
+AHYDSVIGSRGANDNASGTAACLELARVMRNA-PTAADLSFGFWGSEEVGLVGSRIHAQAMPADERSRLRGVFNNDMIAT
+SWDPAEKYWLLD-LRGEAN-DVNRAVYAAGERLGYRTSMSDLFTMGRSDHQSFSEIGVPSGNFGWLHRDGFILEPEYHSS
+DDTVKENISVERLM----AAMEIQGC---AAYALASR------------
+>KBS0714_MOLHKGIG_01861
+----------------MRRTPTLLAAATLAATLTAAPVSLAAPAAPAAPAKAPMGTTQTADRGLGPGQNRAGGNPNSPKK
+LVRSISSDHLRQDITAFAAIADEHGNRAAGTPGFQASLDYAVGELEEAGYDVELQEFEITYTETLRDRLQQTGPVQRDLE
+HTVFTSSPSAQ---VTDAPLAAPAGAATGCADADWAGADLTGSVAL-VSRGDCTFAQKSQVAAASGAEAVIIY-NNAEGA
+LNGTLGAAPGDV----VGTVGVTRELGADLLAQTRAGGATVTLDLEQLVEQRPTWNV-LAETRTGSDD------DVVMLG
+AHLDGVPEGPGIHDNASGVAATLEVARQAAKANKAESKVRFALWGAEEIGLLGSHHYVDTLTAAEREDIILYTNLDMVA-
+---PLDHQNTLGVLTADWSIGAESLLGAQLDRDGHGHQPEG--SNGRSDYAPFVDAGIASTGLLSIRDD------NYHTP
+QDDI-DNVSITTLTHTARAVANLIGTLQQDADALGTR------------
+>SA211_MHAAABBN_01557
+MGYVAYVTSTPTMRMPMRRTPTLLAAATLAATLTAAPVSL---AAPAAPAKAPVATTQTADRGLGPGQNRAGGSTNSPKK
+LVRSISSDHLRQDIEAFAAIADEHGNRAAGTPGFQASLDYAVGELEEAGYDVELQEFEITYTETLRDRLQQTGPVQRDLE
+HTVFTSSPSAQ---VTDAPLTAPAGAATGCADADWAGADLTGSVAL-VSRGDCTFGQKSQVAAASGAEAVIIY-NNAEGA
+LNGTLGTEPGDV----VGTVGVTRELGADLLAQTRAGGATVTLDLEQLVEQRPTWNV-LAETRTGSDD------DVVMLG
+AHLDGVPAGPGIHDNASGVAATLEVARQAAKANKAESKVRFALWGAEEIGLLGSHHYVDTLTAAEREDIILYTNLDMVA-
+---PLDHQNTLGVLTADWSIGAESLLGAQLDRDGHAHQPEG--SNGRSDYAPFVDAGIASTGLLSIRDD------NYHTP
+QDDI-DNVSITTLTHTARAVANLIGTLQQDADALGTR------------
+>TT9_LFPAFLNI_01781
+----------------MRRTPTLLAAATLAATLTAAPVSLAAPAAPAAPAKASAATAQTADRGLGPGQNRAGGNPNSPEK
+LVRSISSDHLRQDIEAFAAIADEHGNRAAGTPGFQASLDYAVGELEEAGYDVELQEFEITYTETLRDRLQQTGPVQRDLE
+HTVFTSSPSAQ---VTDAPLAAPAGAATGCADADWAGADLTGSVAL-VSRGDCTFAQKSQVAAASGAEAVIIY-NNAEGA
+LNGTLGAAPGDV----VGTVGVTRELGADLLAQTRAGGATVTLDLEQLVEQRPTWNV-LAETRTGSDD------DVVMLG
+AHLDGVPEGPGIHDNASGVAATLEVARQAAKANKAESKVRFALWGAEEIGLLGSHHYVDTLTAAEREDIILYTNLDMVA-
+---PLDHQNTLGVLTADWSIGAESLLGAQLDRDGHTHQPEG--SNGRSDYAPFVDAGIASTGLLSIRDD------NYHTP
+QDDI-DNVSITTLTHTARAVANLIGTLQQDADALGTR------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000659.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000659.fa
new file mode 100644
index 0000000000000000000000000000000000000000..970d3165c9490a3897bca3d411ff73cfc9ff9b9a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000659.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01001
+MTPPSPLAPEPVPDRAPAQDPGSGHAPSPASAALPPGHRPTGALPVAPGFDRDLHRLWWY
+TAAGLLSAVVVVAGF-LVFVMARRLAVAEGPDASPLAVTVLVAGIAAAVAAAVGQTLATL
+RLRRAWEEEREPLRRTAVAAL-----LPALLVALTPLAVPSLSAWPVLSLWLSVCLIAPQ
+AAAHVRTAVLTSGAAATLGLTALALVRTPAGPAD-SAVGVLLWWAMVLLVVLPTVWVWRV
+AVRLEEAR-----AQAGELAVARERLRFAADLHDVQGHHLQVIALQAELAGRLLEKGRTD
+QAGAALRDVREQAAEALGETRALVRGLRQVSVASEIENAREVLAATGAVVEVDVDPAAAR
+LAREAARLVGLAVREATTNALRHAEPRRVRLALGPADGAAGGVRLTVTNDGARPPAA-PP
+GTGLAGLAARAAEVSGRLSAGPDDDGGFR-LELTVPSSSGATTR-TDPTTTTGEDA
+>AS2_ACLBLIBL_02588
+MTS------EPTSE------------------------------------TRRLRS----
+-----RTSFVLLAVF-GVAAIVALLTSA----VEPWPPLVLAPGL-----------IAGL
+WLLSQWHREVAAPTRWAVLALGTLTWALSALWELTPLGALAFALAGALEVMWS-----RH
+ARAVVTLLVLTVGAAA----GALVFVTDP--PALWVYVGMGALLTGVACVTIPVSRTSFD
+LMRLQDQR----AEQERAASLDAERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTD-TD
+AARRELDEAQQTLRQTMAETKALAQDGHTLTLRGELANSVALLEAAGITVTTDDDGDPRR
+--EEFEHVAGVVIREGTTNILRHSDARRVEISLAPG-------HVVISNDGVAGAPAEDH
+TGGLDNLRSRLAGVGGRLDVSCG-DGRFT-LEARWEADEEETV-------------
+>KBS0714_MOLHKGIG_00374
+MTS------EHTSE------------------------------------TRRLRS----
+-----RTSFVLLAVF-GVAAIVALLTSA----VEPWPPLVLAPGL-----------IAGL
+WLLSQWHREVAAPTRWAVLALGTLTWALSALWDLTPLGALAFALAGALEVMWS-----RH
+ARAVVTLLVLTVGSAA----GALVFVTDP--QALWVYVGMGALLTGVACVTIPVSRISFD
+LMRLQDQR----AEQERAASLDAERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTD-TD
+AAQRELDEAQQTLRQTMAETKALAQDGHTLTLRGELANSVALLEATGITVTTDDDGGPRG
+--EEFEHVAGVVIREGTTNILRHSDARRVEISLAPG-------HVVISNDGAAGVSAEDH
+TGGLDNLRSRLAGVGGRLDVSCV-DGRFT-LGARWEADEEESV-------------
+>KD337_NAFOICDF_01178
+MSP-------------------AGGPPAPARPTVGTAEHDPAVLP--------LHL--WP
+STMGFAGVWLISFGFVLVELLRRAFTPGDGRGEAILGVAAIAVFILVYLAA-----FVVP
+RPVRAWPAWANTVLTWFVLAG-----CVAVLTRIL----------GVHALLYSPFLVATW
+IFPHRLRVGLTGAGATMAAALATGLLFFPGDPA----LPVVLGNLAVLLVVL-------V
+GMRLAIARDDRVVEMTHELDLAGQRERLGRDLHDILGHSLTTINVKTQLVHRLIDTD-PA
+RAKEEAAEVIALSRTALAEARAAVAELAAPELGGQLSLSVGALRDAGMAVEAPPPGAVTE
+VPQRRRALAAWIVREAVTNVLRHAGARRVRISLDAH-------HVAVLDDGAGLPAAVVA
+GVGPRTLAERAAAEGARLEVGPGLGGAGTGVAVHWGGTTPEAARGVLPATEGRMDA
+>TT9_LFPAFLNI_00381
+MTS------EHTSE------------------------------------TRRLRS----
+-----RTSFVLLAVF-GVAAIVALLTSA----VEPWPPLVLAPGL-----------IAGL
+WLLSQWHREVAAPTRWAVLALGTLTWALSALWDLTPLGALAFALAGALEVMWS-----RH
+ARAVVTLLVLTVGSAA----GALVFVTDP--QALWVYVGMGALLTGVACVTIPVSRISFD
+LMRLQDQR----AEQERAASLDAERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTD-TD
+AAQRELDEAQQTLRQTMAETKALAQDGHTLTLRGELANSVALLEATGITVTTDDDGGPRG
+--EEFEHVAGVVIREGTTNILRHSDARRVEISLAPG-------HVVISNDGAAGVSAEDH
+TGGLDNLRSRLAGVGGRLDVSCV-DGRFT-LGARWEADEEESV-------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000660.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000660.fa
new file mode 100644
index 0000000000000000000000000000000000000000..01701934b96a3ab75c3fd03197e7b375550927a8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000660.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01002
+M-----------------------IRVLVADDEALIRGAVEALLALEEDLDVLPGVGTGD
+DAVAAARALVPDVCLLDLEMPGLDGVEAAREILRSVPT-RVVIFTRHARPGVLRRALAER
+VSGFVPKSTPAEALADVLRQVAAGRRYVDPEIAASALSGERSPLTDRELDVLRAGRTAAR
+VEDIAERLHLAPGTVRNHLSHAMGKLGVRTRHEAAERAWEEGWI
+>AS2_ACLBLIBL_02589
+MND---------------------IRIVLADDEKLLRTALATLLEMEGGIRVEEVAADGN
+EAVEAVRRIDPDLLVTDMEMPGLDGVAAVETLRETHPDLPVVMLTRHARPGVLRRALKAG
+VAGFVTKSAEPEEIADVIRRVNSGQRWIDPDTTARAISDD-CPLTDRELDALRATGEGYS
+VARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARRHEWL
+>KBS0714_MOLHKGIG_00373
+MND---------------------IRIVLADDEKLLRTALATLLEIEGGIRVEEVAADGH
+EAVEAVRRIDPDMLVTDMEMPGLDGVAAVATLRETHPDLPVVMLTRHARPGVLRRALKAG
+VTGFVTKSAEPGEIADVIRRVNSGQRWIDPDTTARAISDD-CPLTDRELDALRATGEGYS
+VARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARRHEWL
+>KD337_NAFOICDF_01177
+MRESADPAPSPASPPAAGLGPGAPLRLLLADDQALVRGALAALLDTEPDLTVVAQAASGD
+EVADAVETHDVDVALLDIEMPGVDGLEALRRIRDRGLGCAVLMVTTFGRPGYLERALAAG
+ARGFVVKDTPAEQLADAVRAVARGERVVDPSLAVDTLAAGPSPLTPREVDVLREALTGAS
+VRAIAGRLHLSAGTVRNHLSAAIGKTATSTRGEAATVARDRGWL
+>TT9_LFPAFLNI_00380
+MND---------------------IRIVLADDEKLLRTALATLLEIEGGIRVEEVAADGH
+EAVEAVRRIDPDMLVTDMEMPGLDGVAAVATLRETHPDLPVVMLTRHARPGVLRRALKAG
+VTGFVTKSAEPGEIADVIRRVNSGQRWIDPDTTARAISDD-CPLTDRELDALRATGEGYS
+VARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARRHEWL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000661.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000661.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d56ee358f885ca945cc34718075943ab0cabea5e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000661.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01003
+MGRGRQKAKATKQAREMKYFSPGTDLSALERELTGGRTRAPEPELDQKPEYEDPYADLYT
+DDDEDDDARAR
+>KBS0714_MOLHKGIG_01860
+MGRGRQKAKATKQAREMKYFSPGTDLSALERELTGGRTRGPEQ--DQEPEYEDPYADLYA
+-EDEDDDARAR
+>KD337_NAFOICDF_00946
+MGRGRQKAKATKQAREMKYMSLGTDLSALERELTGGRTDAPAV--EPEVDYEDPYADLYA
+DDDEDDDSRVR
+>SA211_MHAAABBN_01556
+MGRGRQKAKATKQAREMKYFSPGTDLSALERELTGGRTRGPEQ--DQEPEYEDPYADLYA
+-EDEDDDARAR
+>TT9_LFPAFLNI_01780
+MGRGRQKAKATKQAREMKYFSPGTDLSALERELTGGRTRSPEP--DQEPEYEDPYEDLYA
+-EDEDDDARAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000663.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000663.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fb3b4957b4e39e0ea8a51632edf7b7a39aa2cec1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000663.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01006
+MSMSTSTSTSLPCPQDRRPPVPARPLDVVAAGGPL---FTRADLSAAGLPADRLRAADVR
+RVTHGVHRRADDVPGDWGALGYAEPPVAFAPEETAAIVTASRGVASHLSALLLHGIPVPP
+FLVDDGRVHVSRPHSRGASERPEVRSHARSVPEADAVVLHGIRVTSVERTWADLAALVRP
+GHLDPVVAAGDAVVTGIWTPQGRLPPRATILRLRAGLARSGRFKGARTARAALELIRAGA
+DSPPETALRLALLHAGLPEPELQLVLHRGRRRSPDADLGWRAWRLVVHYDGDPHLDPAQQ
+AVDAWRNGGWARAGWSQIVATVDDARDDFRRVVAEVLAHRARLGGRAYVA
+>KBS0714_MOLHKGIG_01858
+MA------------------TSSLPLSDIVETGRP---FTRGDLRAAGVSERLVRGGDVR
+RVTHGVHRLRSDHLGSWADLGYVEAPAPFAPEETAAIVEASGGVASHLTALLLHRVPLPP
+FLAEDGTVHVSRPHPRGASVRPEITSHARLVPAADVTALHGIRLTSLERSWADLAALLRP
+GMLEPVVAAGDALIHRPWSPEGRRSPRTTTAALRSALLRAGRFKGVRTARAALELVRVGA
+DSPQETALRLALLHAGLPEPELQLVLHPGRARSPDADLGWRQWRLVVHYDGGHHLDPAQL
+AVDSWRDEGWARAGWTQIWATVDDARDDFRRVVAEVQTHRARLGGRVFAS
+>KD337_NAFOICDF_00950
+MALESLADV-----------LGSAPLPIRAEGPPPLGLFTRSDLRAAGLGGHRVHGRDVR
+RVTHGVHRLATDPAGDWAVLGHRCPPAPFAPEETAAIVEAAGGVASHLTALLLHGVPLPP
+FLAEDGTVHVSRPHARGASGRLEVTSHARSVPAADVTSLHGIRVTSLERTWADLASLVPP
+GLVDPVVAAGDAVVRHPWTPQGRSAPRTTPARLAAALDRAGRFKGVRTARRALEAVRVGS
+DSPQETALRLALVHAGIPEPELQLVLHPGRERSPDADLGWRMWRLVVHYDGASHLEPAQR
+AVDARRHEGWERAGWAQIVATVDDARDDFRRVVAEVQAHRRRLGGRVYVC
+>SA211_MHAAABBN_01554
+MV------------------TSSLPLSDIAEAGRP---FTRGDLRAAGVSERLVRGADVR
+RVTHGVHRLRSDHLGSWADLGYVEAPAPFAPEETAAIVEASGGVASHLTALLLHRVPLPP
+FLAEDGTVHVSRPHPRGASVRPEITSHARLVPAADVTALHGIRLTSLERSWADLAALLRP
+GMLEPVVAAGDALIHRPWSPEGRRSPRTTTAALRSALLRAGRFKGVRTARAALELVRVGA
+DSPQETALRLALLHAGLPEPELQLVLHPGRARSPDADLGWRQWRLVVHYDGGHHLDPAQL
+AVDSWRDEGWARAGWTQIWATVDDARDDFRRVVAEVQTHRARLGGRIFAS
+>TT9_LFPAFLNI_01778
+MA------------------TSSLPLPDIVETGRP---FTRGDLRAAGVSERLVRGGDVR
+RVTHGVHRLRTDHLGSWADLGYAEAPAPFAPEETAAVVEASGGVASHLTALLLHRVPLPP
+FLAEDGTVHVSRPHPRGASVRPEITSHARLVPAADVTALHGIRLTSLERSWADLAALLRP
+GMLEPVVAAGDALIHRPWSPEGRRSPRTTTAALRSALLRAGRFKGVRTARAALELVRVGA
+DSPQETALRLALLHAGLPEPELQLVLHPGRARSPDADLGWRQWRLVVHYDGGHHLDPAQL
+AVDSWRDEGWARAGWTQIWATVDDARDDFRRVVAEVQTHRARLGGRIFAS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000665.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000665.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d399af7ec3d0de14abbaacfd4dbd22df8f03c525
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000665.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01008
+MIASRTRRGDGRLTAALDPQDQGPQDECGVFGVWAPGEEVAKLAYYGLYALQHRGQESAGIAASDGKRIGVYKDIGLVSQ
+VFDESTLATFTGHIAVGHCRYSTTGANKWANAQPTLGATAGGDTVALAHNGNLVNSGELLRMVQARDGLQLRGEMKQGNT
+TDTALVTALLHGEEGRKLEETALELLPKVRGAYCFVFMDEHTLYAARDPHGVRPLVLGRLERGWVVASEQSALATVGASF
+IREVEPGEMIAIDEEGIRSTRFAEATPAGCVFEYVYLARPDASIAGRSVYESRVDMGRRLALEGPVDADVVIPVPESGTP
+AAVGYAEASGLPFRQGFVKNAYVGRTFIQPSQTLRQLGIRLKLNVQPSVVAGKRVVVVDDSIVRGNTQRAIVRMLKEAGA
+AEVHVKISSPPVKWPCFYGIDFASRAELIANGAGVAEIASSIGADSLGYISEEAMIAATGQPRERLCTACFTGTYPIELA
+DESERGKSVLETDAGSAAVT-VMAPDGDATTVASTGCEPGPDADDEKLLTETDRTPL
+>KBS0714_MOLHKGIG_01856
+MIAPRTRRGDGRLTAALDPQDQGPQDECGVFGVWAPGEEVAKLAYYGLYALQHRGQESAGIAVSDGGRIAVYKDIGLVSQ
+VFDEATLTALSGHIAVGHCRYSTTGVNKWANAQPTLGATADDGTVALAHNGNLVNSAELLRMVHAADGRHTHGEMKQGNT
+TDTALVTALLHGAPGDRLEETALELLPKIRGAYCFVFMDEHTLYAARDPQGVRPLVLGRLERGWVVASEQSALATVGASF
+IREVEPGEMIAIDEEGIRSTRFAESKPAGCVFEYVYLARPDATIAGRSVYESRVEMGRRLALEQPVEADVVIPVPESGTP
+AAVGYADASGLPFRQGFVKNAYVGRTFIQPSQTLRQLGIRLKLNVESTVVAGKRVVVVDDSIVRGNTQRAVVRMLKEAGA
+AEVHVKISSPPVKWPCFYGIDFATRAELIANGAAVDQIAASIGADSLAYISEEGMIEATGQPRERLCTACFTGDYPIPLA
+DEGERGKGLLEPVAVSPASTVVLDEDGETTTVTATGCEPGPDADDEKLLTETDRTPL
+>KD337_NAFOICDF_00952
+MISARTRRGDGRLTAALDPQEAGPQDECGVFGVWAPGEEVAKLTYYGLYALQHRGQESAGIAASDGKRIAVYKDMGLVSQ
+VFDEPTLAALTGHVAVGHCRYSTTGVNKWANAQPTLGATADDGTVALAHNGNLVNSAELLRMVESKEGAHTLGEIKQGNT
+TDTALVTALLHGEKGVSVEETALELLPKVRGAYCFVFMTERTLYAARDPHGVRPLVLGRLERGWVVASEQSALATVGASF
+IREVEPGEMIAIDEEGIRSTRFAEATPAGCVFEYVYLARPDAAINGRSVYESRVEMGRRLAQEHPVDADVVIPVPESGTP
+AAVGYADASGIPFRQGFVKNAYVGRTFIQPSQTLRQLGIRLKLNVQPSVVAGKRVVVVDDSIVRGNTQRAIVRMLKEAGA
+AEVHVKISSPPVKWPCFYGIDFATRAELIANGAGVQEIASSIGADSLAYISEEGMIAATEQPRERLCTACFTGTYPIELA
+DEKERGKAVLENGTPTAEATDVVSEDGTVTTVASTGCEPGPDSEDEKLLTQTDRTPL
+>SA211_MHAAABBN_01552
+MIAPRTRRGDGRLTAALDPQDQGPQDECGVFGVWAPGEEVAKLAYYGLYALQHRGQESAGIAVSDGGRIAVYKDIGLVSQ
+VFDEATLTALSGHIAVGHCRYSTTGVNKWANAQPTLGATADDGTVALAHNGNLVNSAELLRMVHAADGRHTHGEMKQGNT
+TDTALVTALLHGAPGDRLEETALELLPKIRGAYCFVFMDERTLYAARDPQGVRPLVLGRLERGWVVASEQSALATVGASF
+IREVEPGEMIAIDEEGIRSTRFAESKPAGCVFEYVYLARPDAAIAGRSVYESRVEMGRRLALEQPVDADVVIPVPESGTP
+AAVGYADASGLPFRQGFVKNAYVGRTFIQPSQTLRQLGIRLKLNVQSTVVAGKRVVVVDDSIVRGNTQRAVVRMLKEAGA
+AEVHVKISSPPVKWPCFYGIDFATRAELIANGAAVDQIAASIGADSLAYISEKGMIEATGQPRERLCTACFTGDYPIPLA
+DEGERGKGLLEPVAVSPASTVVLDEDGETTTVTATGCEPGPDADDEKLLTETDRIPL
+>TT9_LFPAFLNI_01776
+MIAPRTRRGDGRLTAALDPQDQGPQDECGVFGVWAPGEEVAKLAYYGLYALQHRGQESAGIAVSDGGRIAVYKDIGLVSQ
+VFDEATLTALSGHIAVGHCRYSTTGVNKWANAQPTLGATADDGTVALAHNGNLVNSAELLRMVHAADGRHTHGEMKQGNT
+TDTALVTALLHGAPGDRLEETALELLPKIRGAYCFVFMDEHTLYAARDPQGVRPLVLGRLERGWVVASEQSALATVGASF
+IREVEPGEMIAIDEEGIRSTRFAESKPAGCVFEYVYLARPDATIAGRSVYESRVEMGRRLALEQPVDADVVIPVPESGTP
+AAVGYADASGLPFRQGFVKNAYVGRTFIQPSQTLRQLGIRLKLNVQSTVVAGKRVVVVDDSIVRGNTQRAVVRMLKEAGA
+AEVHVKISSPPVKWPCFYGIDFATRAELIANGAAVDQIAASIGADSLAYISEEGMIEATGQPRERLCTACFTGDYPIPLA
+DEGERGKGLLEPVAVSPASTVVLDVDGETTTVTATGCEPGPDADDEKLLTETDRTPL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000666.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000666.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3789cf4ef20f3aca53181e0cbf252b037a0b5af2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000666.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01009
+MTTGPERS----QHQHAYTVRRAPRLAAVLAVALALGLVIALVITTAVHGSPTPPADPYS
+GIPLSFSETFGFAALLSMLGTGVLGLVVWLLLDRRSRATTRTVVLERTDDPAAADIRLDR
+SAADALRSRTA--PTE-RTPEQ
+>KBS0714_MOLHKGIG_01855
+MTSAPEPT----PDQRAYTVRRAPRLTAVLAVALALGLLIALVITTAVHASPTPPADPYS
+GIPLSFSETFGFASLLSMLGTSVLGLLVWLLLDRRSRSTARTVVLERTDDPAVADVRLDR
+VDAGAPPARTT--PTE-RTPEQ
+>KD337_NAFOICDF_00953
+MTSGPERSTPSAPQQQEYVLRRAPRLSAAVIVSALVGVVLALLGTAAVHAGPQPPADPYS
+GMPLSFASTFGYMVVAAVLACLVLGLLVWLLLDRRSRRTQRTVLLERTDDPAAADVALPR
+PEAVAPAARPAADPSDGRTPEQ
+>SA211_MHAAABBN_01551
+MTSAPEPT----PDQRAYTVRRAPRLTAVLAVALALGLLIALVITTAVHASPTPPADPYS
+GIPLSFSETFGFAALLSMLGTGVLGLIVWLLLDRRSRSTARTVVLERTDDPAVADVRLDR
+VDAGTPPARTT--STE-RTPEQ
+>TT9_LFPAFLNI_01775
+MTSAPEPT----PDQRAYTVRRAPRLTAVLAVALALGLLIALVITTAVHASPTPPADPYS
+GIPLSFSETFGFASLLSMLGTSVLGLLVWLLLDRRSRSTARTVVLERTDDPAVADVRLDR
+VDAGAPPARTT--PTE-RTPEQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000667.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000667.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ebc0dacf77d36dfa4366c56f51a4b64fd2f8ba01
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000667.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01014
+MTTGSVPRRRIPVPEGHAALTSWARTHAQDPAAAAALPRSTRATAVRFALEELATRVPGN
+AVEVRVPPFGVAQAIPGPRHTRGTPPNVVEMDAVTWLSLATGLLGWADAVGTGAVRASGT
+RADLGAHLPLIRP
+>KBS0714_MOLHKGIG_01854
+MTTGSVPRRRVPVVEGHAALLAWARAHEEDPAAAAALPRPTRATAVRFALEELATRVPGN
+SVEVRVPPFGVAQCLPGPRHTRGTPPNVVEMDAVTWLSLATGLTTWEDATAAGGVRASGV
+RADLGAHLPLVRP
+>KD337_NAFOICDF_00956
+MTTGSVPKRRVPVVEGHAALTAWARAHAEDPAAAAALPRSTRATAVRFALEELATRAPGN
+SVEVRVPPFGVAQCIPGPRHTRGTPPNVVETDPVTWLSLATGLTRWNDAVASGAVRASGV
+RADLAGHLPLVRP
+>SA211_MHAAABBN_01550
+MTTGSVPRRRVPVVEGHAALLAWARAHEEDPAAAAALPRPTRAMAVRFALEELATRVPGN
+SVEVRVPPFGVAQCLPGPRHTRGTPPNVVEMDAVTWLSLATGLTSWDEATAAGGVRASGV
+RADLGAHLPLVRP
+>TT9_LFPAFLNI_01774
+MTTGSVPRRRVPVVEGHAALLAWARAHEEDPAAAAALPRPTRAMAVRFALEELATRVPGN
+SVEVRVPPFGVAQCLPGPRHTRGTPPNVVEMDAVTWLSLATGLTTWEDATAAGGVRASGV
+RADLGAHLPLVRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000670.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000670.fa
new file mode 100644
index 0000000000000000000000000000000000000000..99f9843ef6ff17145481f97fa29121eed9db5455
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000670.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_01018
+MPTTRPSADTAGAPAETGAAAVLAGLRVALHVAFAVLLAVGLGRALADLSRTGAPAP-AV
+LALTGCTALLAGVYLAGTLVERRRWGRGEDVGRGPALLWLALVLALWGLLVAQHRDFAWV
+AFPLFFVALHVVARTARTAMARRIAGPVLVAAMAAVVVAGMAAGVDEGVRPAAVIGPLVG
+AAVAVVLSGAYRALHQESERQRDVAEQLRAAQAELARTQHRAGVGEERERLAREIHDTLT
+QGLASIVLVSRAAQDALDAQDPALARTRMETVRTTAAENLDESRRFVRDLRAT-------
+---GGASLVAAVERAVAGFAERQAAAGTPVAADVEVVGTPVPLAEAVEAALLRAVQASLA
+NVAAHARATRARVTLAWMPGELAVDVADDGVGFRPEAVVTGDAGTQGTGAGTQGARAG-R
+A-SRPGA------GTGVGLASVRERLAGVGGHASVESAPGEGTVVALRVPLPAA-AGRAE
+EDEGRER---G
+>KBS0714_MOLHKGIG_01850
+M-SVAPRAAVPPAPTETGTTAVLAGLRVALHVTFAALLTVGLARALADRSPEASSGPFPA
+TTLVLLTAALAGVYLAGTVLERRRWARGDDVGRGPAVAWLALVLLLWGLLVAHHGDFAWV
+AFPLFFVVLHVVDRVARQAWVRHVVGPALVVAMAVVVVAGMAAGAG-GVRVPAVIGPLVG
+AAVAVVLSGAYRALHAESERQRAVAEQLRAAQAELARTEHRAGVSAERERLAREIHDTLT
+QGLASIVLVSRAAQDALDAADPALARQRMETVRATAAENLAESRRFVRDLRGT-------
+---GAPSLIEALERAVAGFADRQAAAGTPVAADVEVVGEPVAVAEAVETAVLRAVQASLA
+NVGAHAGARRARVTLGYLGDELTVDVADDGAGFDPAVVAA-------------RPRAG-A
+AGADPGA------GTGVGLASVRERLAAVGGEATVESAPGEGTVVALRVPLVAAGAGRSA
+DPEQTESEETA
+>KD337_NAFOICDF_00960
+MRTSDPADGPRGA---NGTAALLSGLRVAVHVGFAVLLALALVRALAGPDAGARLTGRPA
+LALVGLTVVLAGVYLTGTVAERRLHAAGRAPGRTAAGTWLAVLLGVWALAVLRHPDMMWV
+AFPLFFVALHAVHVI----LGRPRLALACVAAMTVVVV---VASLERGTAPGAVLGPAVG
+AAVAVVVFHACRLLVVESERQRSVAEQLRATRAELAASERHAGVLAERERLAREIHDTLT
+QGLASIVLVSRAAQDAVRAGDAALADERLETVRTTAAENLAESRAFVRGLRAPVDGVQGG
+ADRAGSALEAALGAAVRGFRARRQALGRPVEAELAVVGEPVAVGEAVETVLVRAAQSSLA
+NVDQHARTDRCRVTLTWMDGEVALDVADDGVGFDPEAA---------------RARASRA
+AVSDPAAPRPAEEGTGVGLAGLAERVAGVGGRVDVESAPGQGCVVAVRIPVPRQHERRGA
+-----------
+>SA211_MHAAABBN_01546
+M-SVAPRAAVPPAPTETGTTAVLAGLRVALHVTFAALLTVGLARALADRSPDA-SGPFPA
+TTLVLLTAALAGVYLAGTVLERRRWARGDDVGRGPAVAWLALVLLLWGLLVGHHGDFAWV
+AFPLFFVVLHVVDRVARQAWVRHVVGPALVVAMAAVVVAGMAAGAG-GVRVPAVIGPLVG
+AAVAVVLSGAYRALHAESERQRAVAEQLRAAQAELARTEHRAGVSAERERLAREIHDTLT
+QGLASIVLVSRAAQDALDAADPALARQRMETVRATAAENLAESRRFVRDLRGT-------
+---GAPSLVEALERAVTGFADRQAAAGTPVAADVEVVGEPVAVAEAVETAVLRAVQASLA
+NVGAHAGARRARVTLGYLGDELTVDVADDGAGFDPAVVVA-------------RARAG-A
+AGADPGA------GTGVGLASVRERLAAVGGEATVESAPGEGTVVALRVPLAAAGAGRSA
+DPEQTESEETA
+>TT9_LFPAFLNI_01770
+M-SVAPRAA---APTETGTTAVLAGLRVALHVTFAALLTVGLARALADRSPEASSGPFPV
+TTLVLLTAALAGVYLAGTVLERRRWARGDDVGRGPAVAWLALVLLLWGLLVAHHGDFAWV
+AFPLFFVVLHVVDRVARQAWVRHVVGPALVVAMAVVVVAGMAAGAG-GVRVPAVIGPLVG
+AAVAVVLSGAYRALHAESERQRAVAEQLRAAQAELARTEHRAGVSAERERLAREIHDTLT
+QGLASIVLVSRAAQDALDAADPALARQRMETVRATAAENLAESRRFVRDLRGT-------
+---GAPSLIEALERAVTGFADRQAAAGTPVAADVEVVGEPVAVAEAVETAVLRAVQASLA
+NVGAHAGAHRARVTLGYLGDELTVDVADDGAGFDPAVVAA-------------RPRAG-A
+AGADPGA------GTGVGLASVRERLAAVGGEATVESAPGEGTVVALRVPLVAAGAGRSA
+DPEQTESEETA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000675.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000675.fa
new file mode 100644
index 0000000000000000000000000000000000000000..93b0ee4403530bd440c3981acf65187393f9ef05
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000675.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01026
+MRPSATAP-RRLVRAGSRAAVGMGTAAALGLAWGLVEAEARVVRTHRLAVLPAGADPVRV
+LHLSDIHLLPRNRSRMAWLRGLDALEPDLVVNTGDNISAAASVPLVLDALGPLLRRPGVF
+VPGSNDYYEPKPANPFRYFAGPSRMDEDRARLPTEALFGAFRAAGWADLTNRGSVLSVPT
+RAGTVLEVLAAGTDDPHLGLDAWGGFPAPAPAPAPAPGDAAASGPASAHDDGAARPGGDG
+RFRLGVTHAPYRRVLDAMTVDGADLLLAGHTHGGQVCLPGFGALVTNCDLPRAQASGVST
+WTAAGRTVPLEVSAGLGTAPSAPVRFACRPEAVVLELLPCA
+>KBS0714_MOLHKGIG_01842
+MPPAASPT-RRMLRSAAPAAVGMAATAGLGLAWGLAEAEARTVRTHRLAVLPAGSAPLRV
+LHLSDIHLLPRHRAKRAWLRGLDALEPDLVVNTGDNVSAAASVPLVLDALGPLLARPGVF
+VPGSNDYYAPKAANPLRYFAGPSRMDEDRPRLPSDVLFGAFRAAGWADLTNRGAALAVPT
+RAGTTLEVLAAGTDDPHLGLDAWAGFPGAAP------------------DENAGRPGDDG
+RFRLGVTHAPYRRVLDAMTADGADLLLAGHTHGGQVCVPFLGALVTNCDLPRRQASGVST
+WTAAGRTVPLEVSAGLGTAPSAPVRFACRPEAVVLDLVPRG
+>KD337_NAFOICDF_00967
+MTDAPGPRLRRLTHTAAWAAGGASALGAGALVWGRVEAEARVVRTHTVPVLPAGARPLRV
+LHLSDIHLLPRHRRRLEWLCSLADLEPDLVVDTGDNISSAASIPLLLDALAPLLAVPGVF
+VPGSNDYFTPKPANPLRYLRGPSELEASRSRLPTEDLFSAFRAAGWTDLTDRAADVVVGS
+-GPDAVRIRAAGTDDPHLGLDRWPGF--------------------DLADEGAA--GDAP
+LLRLGVTHAPYRRVLDAMTADGADLLLAGHTHGGQVCLPFAGALVTNCDLPRSQASGLSS
+WTAAGRTVPLEVSAGIGTAPSAPVRTFCRPEAVVLDLVPRA
+>SA211_MHAAABBN_01539
+MPPAASPT-RRMLRSAAPAAVGMAATAGLGLAWGLAEAEARTVRTHRLAVLPAGSAPLRV
+LHLSDIHLLPRHRAKRAWLRGLDALEPDLVVNTGDNVSAAASVPLVLDALGPLLARPGVF
+VPGSNDYYAPKAANPLRYFAGPSRMDEDRPRLPSDVLFGAFRAAGWADLTNRGAALAVPT
+RAGTTLEVLAAGTDDPHLGLDAWAGFPGAAP------------------DENAGRPGDDG
+RFRLGVTHAPYRRVLDAMTADGADLLLAGHTHGGQVCVPFLGALVTNCDLPRRQASGVST
+WTAAGRTVPLEVSAGLGTAPSAPVRFACRPEAVVLDLVPRG
+>TT9_LFPAFLNI_01763
+MRPAASPA-RRMFCAAAPAAAGLAATAGLGLAWGLAEAEARTVRTHRLAVLPAGSAPLRV
+LHLSDIHLLPRHRAKRAWLRGLDALEPDLVVNTGDNVSAAASVPLVLDALGPLLARPGVF
+VPGSNDYYAPKAANPLRYFAGPSRMDADRPRLPSDVLFGAFRAAGWADLTNRGAALAVPT
+RAGTTLEVLAAGTDDPHLGLDAWAGFPGSAP------------------DGGAGRPGDDG
+RFRLGVTHAPYRRVLDAMTADGADLLLAGHTHGGQVCVPFLGALVTNCDLPRRQASGVST
+WMAAGRTVPLEVSAGLGTAPSAPVRFACRPEAVVLDLVPRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000679.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000679.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f95d51c369c930f4e857cf84c8f6916ec36378be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000679.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01030
+---------------------------------------MVLVRDGEDGPEVFLRHRPGR
+TPLGRVGLPGGALSEADADACAWFGPDPAHWARVLGTTDRRCARQQVVAAVRELHDEAGV
+LLAGRTDADVVLDARGETWGGGGSSLEEGAESLPRMLAARGLGLRTDLLRPVARWHSAPH
+AHRRFDTAVFAAAVPPLQRPLERPETAPALQAWVSARRAVAGPVPLPGP---AGEEGVAP
+LDQVATPLTQVLVRRVAAHRTAAAFLLSLTQGAGHGPVPEYRLVTEAGDD----GAPRMR
+VERVTR-D
+>KBS0714_MOLHKGIG_01838
+MSADPAGLLLPVPGQEEDLTRQWLDRRFRQVRPARPGSSVVLVRDGDDGPEVFLRHRAGR
+TPLGRVGLPGGALIESDADSCPWYGPEPSQWARTFGTTDRRRARQHVVAAVRELHDEAGV
+LLAGRSDTDVVSTARIETWGGGRSSLEEGSESLPHLLAARGLGVRADLLRPVMRWRSAPH
+VHRRFDTAVFATMTPPLQSAPASEEPGPELQAWVSARRALAGPLRLPGP---AGAEGTAP
+FDQVATPLTQVIVRRVAAHRTAAAFLLSVTPCARRGPVPEYHLVTEAGDD----GTPRMR
+VKRATR-D
+>KD337_NAFOICDF_00971
+MSAEPDAPRVRVPGHEEELTRQWLAQRHRQVRPARPASAVVLVRDGADGVEVLLRHRSGR
+TPLGRIGLPGGSLVDSDADPCTWYGPAPDEWARALGLADRRRVRQHVVAAVRELFEESGV
+LLAGPADMDLVQDARGETWGASRSSLEEGDESLPRLLGDRGLGLRTDLLRGVGRWLSAPH
+SPRRFDTVVFAAALPPQQELVHRPE-GPVLQGWFSARRLLSEPAALPGPDGWLGESGVVA
+LEEVSTPMTQLVLRRVAEHRTAAGFLLSPAGC--RGPVPVVKLRTEAEHDDLATGTLYTV
+AERVDPVG
+>SA211_MHAAABBN_01535
+MSADPAGLLLPVPEQEEDLTRQWLDRRFRQVRPARPGSAVVLVRDGDDGPEVFLRHRAGR
+TPLGRVGLPGGALIESDADLCPWYGPEPSQWAHTFGTTDRRRARQHVVAAVRQLHDEAGV
+LLAGRSDTDVVSTARVETWGGGRSSLEEGSESLPHLLASRGLGLRADLLRPVMRWHSAPH
+VHRRFDTAVFATTTPPVQSAPASEEPGPELQAWVPACRALAGPLRLPGP---AGAEGTAP
+FDQVATPLTQVIVRRVAAHRTAAAFLLSVTPCARRGPVPEYHLVTEAGDD----GTPRMR
+VERATR-D
+>TT9_LFPAFLNI_01759
+MSADPAGLLLPVPEQEEDLTRQWLDRRFRQVRPARPGSAVVLVRDGDDGPEVFLRHRAGR
+TPLGRVGLPGGALIESDADLCPWYGPEPSQWAHTFGTTDRRRARQHVVAAVRQLHDEAGV
+LLAGRSDTDVVSTARVETWGGGRSSLEEGSESLPHLLASRGLGLRADLLRPVMRWHSAPH
+VHRRFDTAVFATTTPPVQSAPASEEPGPELQAWVPACRALAGPLRLPGP---AGAEGTAP
+FDQVATPLTQVIVRRVAAHRTAAAFLLSVTPCARRGPVPEYHLVTEAGDD----GTPRMR
+VERATR-D
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000680.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000680.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5fe6ef38ea56072b01b823d87b85a4d2de1e7aba
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000680.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01031
+-------------------------MDLEVLRKAPLFTNLDDEVFAILTSELTEVELSRG
+ASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPGEIFGEMALFNPAPRSATAT
+AVSATRLAGLRHENLRRAIGSSPDVSVQLLQALAQRLSKTNESLADLVFSDVPGRVAKAL
+LDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKALAEFVQRGWIRLENRAVVIL
+DLQRLRQRSR
+>KBS0714_MOLHKGIG_01837
+-------------------------MDLEVLRKAPLFTNLDDEVFAILTSELTEVELSRG
+ASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPGEIFGEMALFNPAPRNATAT
+AVSATRLAGLRHENLRRAIASSPDVSVQLLQALAQRLSKTNESLADLVFSDVPGRVAKAL
+LDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKALAEFVQRGWIRLENRAVVIL
+DLQRLRQRSR
+>KD337_NAFOICDF_00972
+MGHNGTDIPGAPRPRLAVSQKGRARMDLEVLRKAPLFTNLDDEVFSILTSELTEVELSRG
+ASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPGEIFGEMALFNPAPRSATAT
+AVSAARLAGLRHENLRRAIASSPDVSLQLLQALAQRLSKTNESLADLVFSDVPGRVAKAL
+LDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKALAEFVQRGWIRLENRAVVIL
+DLQRLRQRSR
+>SA211_MHAAABBN_01534
+-------------------------MDLEVLRKAPLFTNLDDEVFAILTSELTEVELSRG
+ASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPGEIFGEMALFNPAPRNATAT
+AVSATRLAGLRHENLRRAIASSPDVSVQLLQALAQRLSKTNESLADLVFSDVPGRVAKAL
+LDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKALAEFVQRGWIRLENRAVVIL
+DLQRLRQRSR
+>TT9_LFPAFLNI_01758
+-------------------------MDLEVLRKAPLFTNLDDEVFAILTSELTEVELSRG
+ASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPGEIFGEMALFNPAPRNATAT
+AVSATRLAGLRHENLRRAIASSPDVSVQLLQALAQRLSKTNESLADLVFSDVPGRVAKAL
+LDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKALAEFVQRGWIRLENRAVVIL
+DLQRLRQRSR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000681.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000681.fa
new file mode 100644
index 0000000000000000000000000000000000000000..71436e28759d25f27b6d141e24e994ff185da2d1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000681.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01033
+MSSTVSAPAAAPTRTREEFAGRWAFILAAIGSAVGLGNIWRFPYVAYENGGGAFVIPYLIALLTAGIPLLFFDYAIGHRF
+RGSAPLAFRRLSRWTESVGWWQVLICVVIAVYYAAIIGWAIMYTWFSVDQRWGADPETFMMGEFLQVSETPNPTFDVVSG
+VFWPMLAVWVITLLIMGFGVRRGVAMASMIGIPLLVVMFLVLVGIALTLPGAAQGLDALFTPNWAALADPGVWIAAYGQI
+FFSLSVGFGIMITYASYLKKRTNLTSSGLVVGFSNSGFEILAGIGVFSALGFMAQASGVSVADVAGSGIGLAFIAFPTLI
+SQAPVGALIGVLFFGSLVLAGFTSLISILEVVISAVKDKLGWGRWTATIIVVGLAGVVSMALFSTTSGLHMLDTMDAFAN
+NFGIVGAALVSVLLVTGVLGSARRVTAHLNAVSSFKLGRGYVLLIGVLMPIVLAYIWLSWIMKVISEGYGGYPGDFLGVY
+GWGVAIGSVVLAVVLSLIPWSRKSNLYAEEMETEIHGDLIPHNAVPEGTTPTGAIPLVPADHTRKEL
+>KBS0714_MOLHKGIG_01835
+MSSTVSAPATAPKRTREEFAGRWAFILAAIGSAVGLGNIWRFPYVAYENGGGAFVIPYLIALLTAGIPLLFFDYAIGHRF
+RGSAPLAFRRLSRWTETVGWWQVLICVVIGIYYAAIIGWAIMYTWFSVDQRWGDDPETFLMGDYLQVADDPSPSFDVVSG
+VFWPMLAVWVITLLIMGFGVRRGVALASMVGIPLLIVMFLVLVGIALTLPGAAQGLDALFTPNWAALADPGVWIAAYGQI
+FFSLSVGFGIMITYASYLNRRTNLTGSGLVVGFSNSGFEILAGIGVFSALGFMAQASGVSVSEVAGSGIGLAFIAFPTLI
+SQAPLGALIGVLFFGSLVVAGFTSLISILEVVISAVKDKLGWGRWTATIVVIGLSGVVSLALFSTTTGLQMLDTMDAFAN
+NFGIVGAALLSVLLVTGALGSARRITAHLNAVSSFKVGRGYVLLIGVLMPIVLAYIWLSWIMKVIAEGYEGYPGDFLGVF
+GWGIALGSVALAVLLSLIPWSRKSNLYAEDLDSEIHGDLIPHNAVPEGTVPTGALPVVPVATTRKEL
+>KD337_NAFOICDF_00974
+M-STSTGATAAPSRTREEFTGRWAFILAAIGSAVGLGNIWRFPYVAYEHGGGAFVIPYLVALLTAGIPLLFLDYAIGHRF
+RGSAPMAFRRMSRWTEAIGWWQVLICAVIGVYYAAIIAWSIMYTWFSLDQRWGDDPEGFLFSTYLQQVKDPNPSFDIVPG
+VFWPMVAVWGVLLLIMGLGIRRGVALASMIGIPLLVVMFVVLVIISLTLPGAMQGLDALFTPNWAALKEPGVWIAAYGQI
+FFSLSVGFGIMITYASYLKKRTNLTASGLVVGFSNSGFEILAGIGVFSALGFMAQASGVQVSEVAGSGIGLAFIAFPTLI
+TQAPAGALIGVLFFASLVIAGFTSLISILEVVVSAVKDKLGWGRWTAVLVVVGISAVISISLFSTTTGVAMLDTMDAFAN
+NFGIVGAALVAVIAVMWIARRGGELVAHLNSVSSFRVGRVYRILVGVVMPVLLGWMWIEWIRENAATPYGGYPTDFLAVY
+GWGLAIGSVVLAVLLSLIPWSHKSSLHAEESVNEI-----------DHTAPVAS----------KES
+>SA211_MHAAABBN_01532
+MSSTVSAPATAPKRTREEFTGRWAFILAAIGSAVGLGNIWRFPYVAYENGGGAFVIPYLIALLTAGIPLLFFDYAIGHRF
+RGSAPLAFRRLSRWTETVGWWQVLICVVIGIYYAAIIGWAIMYTWFSVDQRWGEDPETFLMGDYLRVADDPSPSFDFVSG
+VFWPMLAVWVITLLIMGFGVRRGVALASMVGIPLLIVMFLILVGIALTLPGAAQGLDALFTPNWAALADPGVWIAAYGQI
+FFSLSVGFGIMITYASYLNRRTNLTGSGLVVGFSNSGFEILAGIGVFSALGFMAQASGVSVSEVAGSGIGLAFIAFPTLI
+SQAPLGALIGVLFFGSLVVAGFTSLISILEVVISAVKDKLGWGRWTATIVVIGLSGVVSLALFSTTTGLQMLDTMDAFAN
+NFGIVGAALLSVLLVTGALGSARRITAHLNAVSSFKVGRGYVLLIGVLMPIVLAYIWLSWIMKVIAEGYEGYPGDFLGVF
+GWGIALGSVALAVLLSLIPWSRKSNLYAEDLDSEIHGDLIPHNAVPEGTVPTGALPVVPTAATRKEL
+>TT9_LFPAFLNI_01756
+MSSTVSAPATAPKRTREEFTGRWAFILAAIGSAVGLGNIWRFPYVAYENGGGAFVIPYLIALLTAGIPLLFFDYAIGHRF
+RGSAPLAFRRLSRWTETVGWWQVLICVVIGIYYAAIIGWAIMYTWFSVDQRWGEDPETFLMGDYLRVADDPSPSFDFVSG
+VFWPMLAVWVITLLIMGFGVRRGVALASMVGIPLLIVMFLILVGIALTLPGAAQGLDALFTPNWAALADPGVWIAAYGQI
+FFSLSVGFGIMITYASYLNRRTNLTGSGLVVGFSNSGFEILAGIGVFSALGFMAQASGVSVSEVAGSGIGLAFIAFPTLI
+SQAPLGALIGVLFFGSLVVAGFTSLISILEVVISAVKDKLGWGRWTATIVVIGLSGVVSLALFSTTTGLQMLDTMDAFAN
+NFGIVGAALLSVLLVTGALGSARRITAHLNAVSSFKVGRGYVLLIGVLMPIVLAYIWLSWIMKVIAEGYEGYPGDFLGVF
+GWGIALGSVALAVLLSLIPWSRKSNLYAEDLDSEIHGDLIPHNAVPEGTVPTGALPVVPAATTRKEL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000685.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000685.fa
new file mode 100644
index 0000000000000000000000000000000000000000..269a29f55fac7ead2df24958092ba7d7670e5506
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000685.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01037
+MDAEQADTPTGESRLALVRRARRIDRELAATYPYAVAELDFETPFELLVATVLSAQTTDV
+RVNAATPALFARFPDAAAMAGASEAELQGLVRSTGFYRNKASAILRLSQELVERHGGEVP
+GRLEDLVALPGVGRKTAFVVLGNAFGRPGITVDTHFGRLARRLGFTQDTDPVKVEHAVAE
+LFPRRDWTMLSHRLIFHGRRICHARRPACGACPIARWCPSYGEGETDPEKARALLSYELK
+PGREELLALMRAGLSRRELRARGHGLDA
+>KBS0714_MOLHKGIG_01831
+METEPTDTPTGETRLALVRRARRIDRILAETYPYAVAELDFETPFELLVATVLSAQTTDV
+RVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKASAILRLSQELVARHDGEVP
+ARLEDLVALPGVGRKTEFVVLGNAFGQPGITVDTHVGRLARRLGFTDETDPVKVEHAVGA
+LFPRRDWTMLSHRLIFHGRRVCHARRPACGACPIARWCPSYGEGETDPERARALLAYELK
+PGREELLELLRAGRTRRELRALGHGLEA
+>KD337_NAFOICDF_00977
+MAPADTTTPTGETPLALTRRARRIDRALAEAYPYAVAELDFETPFELLVATVLSAQTTDV
+RVNAVTPALFARFPDAVAMAGADEVELQELVRPTGFYKNKASAVLRLSRELVERFDGEVP
+DRLEDLVTLPGVGRKTAFVVLGNAFGRPGITVDTHFGRLARRLGFTEETDPVKVEHAVAA
+LFPPRDWTMLSHHLVFHGRRVCHARKPACGACPIARWCPSYGAGETEPEAARALLSYELK
+PGREELLARMRAGATRRQLRDEGWTLEA
+>SA211_MHAAABBN_01528
+MEPEPTDTPTGETRLALVRRARRIDRILAETYPYAVAELDFETPFELLVATVLSAQTTDV
+RVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKASAILRLSQELVARHDGEVP
+ARLEDLVALPGVGRKTAFVVLGNAFGQPGITVDTHVGRLARRLGFTDETDPVKVEHAVGA
+LFPRRDWTMLSHRLIFHGRRVCHARRPACGACPIARWCPSYGEGETDPERARALLAYELK
+PGREELLELLRAGRTRRELRALGHGLEA
+>TT9_LFPAFLNI_01752
+METESTGTPTGETRPALVRRARRINRILAETYPYAVAELDFETPFELLVATVLSAQTTDV
+RVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKASAILRLSQELVARHDGEVP
+ARLEDLVALPGVGRKTAFVVLGNAFGQPGITVDTHVGRLARRLGFTDETDPVKVEHAVGA
+LFPRRDWTMLSHRLIFHGRRVCHARRPACGACPIARWCPSYGAGETDPERARALLAYELK
+PGREELLELLRAGRTRRELRALGHGLEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000686.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000686.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b802e4cfc657cd67604dd7d41e45ce540925d55b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000686.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01040
+M-------------------------AAVRDRLAALVERHGVPADQAPRD----ALTEIP
+ASAVSTWGFDWPRAQRARPSAVLILFGSLDDVPAHHADDR--VHPDVDVLLTQRAATLRT
+HAGQIAFPGGRVDPEDADVVATALREAEEETDLDPDGVEVLGVLPPVPVVVSGHVVHPVI
+GWWRDPSRVAVVDQAEAAAVFRMPVGDLVDPANRCRVARPGGRRGETPGFLVGERLVWGF
+TAALLDRILTLLDWDTPWDSGRVIDAHTHAPLRG
+>KBS0714_MOLHKGIG_01829
+M---PETPASPRPTSRDAVGTSDASLAGARDQLADLVARWGAAPADAPGHHDPVSLTTVP
+PEAVPMWGFDWPRSGDPRPSAVLILFGALDDVPARHDAER--VHPHVDVLLTQRAATLRQ
+HAGQIAFPGGRVDPEDGDVVATALREAQEETGLDPAGVEVLGVLPAVPVVVSGHVVHPVL
+GWWRDPSRVAVVDQAEAAAVFRMPVADLVDPANRCRVARPGGRRGETPGFLVGERLVWGF
+TAALLDRVLGLLGWDVPWDDSRVRDARTHEILRD
+>KD337_NAFOICDF_00979
+MSIPPLPPSSP---------------SSARADLQRIVAEHGVAPVAG---DDEAGLTTIP
+ASSVRVWGFDWPQAARPRASAVLILVGELDDVPAAHDGRACGVSPAVDVLLTQRAAGLRT
+HAGQVAFPGGGVEAQDADVVATALREAQEETGLDPAGVEVLGVLPAVPVVVSGYVVHPVI
+GWWRDPSRVAVVDHNEATAVFRVPVADLAAPANRVRVRRPGGRRGETPGFLAGDRLVWGF
+TAALLSRVLELAGWDEPWAGAPLIDAGSRAVLEG
+>SA211_MHAAABBN_01526
+M---PETPASPHPTSRDAAGTSDASLAGAREQLADLVARWGAPPAEAPGHHDPASLTTVP
+PEAVPMWGFDWPRSGDPRPSAVLILFGALDDVPARHDAGR--VHPHVDVLLTQRAATLRQ
+HAGQIAFPGGRVDPEDGDVVATALREAQEETGLDPAGVEVLGVLPAVPVVVSGHVVHPVL
+GWWRDPSRVAVVDQAEAAAVFRMPVADLVDPANRCRVARPGGRRGETPGFLVGERLVWGF
+TAALLDRVLALLGWDVPWDDSRVRDARTHRILRD
+>TT9_LFPAFLNI_01750
+M---PETPASPRPTSRDAAGTSEASLTGARDQLADLVARWGTAPADAPGHHDPASLTTIP
+PEAVPMWGFEWPRSGDPRPSAVLILFGALDDVPARHDAER--VHPHVDVLLTQRAATLRQ
+HAGQIAFPGGRVDPEDADVVATALREAQEETGLDPAGVEVLGVLPAVPVVVSGHVVHPVL
+GWWRDPSRVAVVDQAEAAAVFRMPVADLVDPANRCRVARPGGRRGETPGFLVGERLVWGF
+TAALLDRVLALLGWDVPWDDSRVRDARTHEILRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000696.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000696.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bc9d20116c6745c06442b5575376c545a74eb1ab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000696.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_01051
+MPTTPASVTASVPEGKKLVIVESPAKSKSIAKYLNAVGEGWVVDSSVGHIRDLPKPSDLPADMKKGPFGKFAVDTENGFA
+PYYVVHPDKKKKVTELKRELKDAVALYLATDADREGEAIAWHLLDTLKPKVPVYRMTFGEITKEGVRRGLENIRELDTHL
+VDAQETRRILDRLFGYELSPVLWRKVSRGLSAGRVQSVATRLVVERERERMAFVSAAYWGVEGTFTVAPGAQAADAVGSS
+FTARLSTVDGERVATGRDFDDAGALKASAGKKVTHLDEAAASSLAQGLRGADFTVDAVEDKPYTRRPAAPFTTSTLQQEA
+SRKLRMSSRVSMQVAQRLYENGYITYMRTDSVNLSQEAVQAARRQATELYGQDAVPAQPRVYAKRNESAQEAHEAIRPAG
+DSFRTPAQVKAELRPDEFRLYELIWKRTVASQMADAKGYTATLRFSATAQDGRAAQFSASGTVITFKGFLDAYEEGKDAE
+TEDEKAEAKDRRLPQVAEGERLVGEPIEATGHETSPPARYTEASIVAELERREIGRPSTYAPTISTIMDRGYVSKRGNAL
+VPSWTAFAVIGLLEDYFAKYVDYDFTARMEDDLDRIAAGELGREAWLQTFYFGAPASETGKGVEGLQQVVENLGEIDARA
+VNSLPITDEITLRVGQYGPYLEKPLPADAEAGSTPPRANVPEELAPDELTPAKAEELFATAKPSERELGTDPETGRAVVA
+KDGRYGPYVTEVIPEMTEEQLQAWLDAQPTEYYKNGKPKPKKKPAKEKPRTGSLFSSMSVDTVTLEEALRLMSLPRVVGA
+DAEGEVITAQNGRFGPYLKKGTDSRSLESEDQIFTITQEQALEIYAQPKQRGRGAAKPPLAEFGEDPVSGKKVTVKEGRF
+GPYVTDGVTNITVPRGRQPEELTAEEAYQLLADKRAKGPATRKAPARKPAARKAPAKK----SAPKKKA
+>KBS0714_MOLHKGIG_01819
+MSTSSASVTAPVPEGKKLVIVESPAKSKSIAKYLNAVGSGWVVDSSVGHIRDLPKPSDLPADMKKGPFGKFAVDTEHGFT
+PYYVVHPDKKKKVAELKRELKDAEALYLATDADREGEAIAWHLLDTLKPTVPVYRMTFGEITQEGVRRGLENIRELDTAL
+VDAQETRRILDRLFGYELSPVLWRKVSRGLSAGRVQSVATRLVVERERERMAFVSAHYWGVEGTFTVAEGAQAADAVGSS
+FTARLSTVDGERVATGRDFDDAGRLKASAGKKVTHLDEAGARSLAEGLRGADFTVDSVEDKPYTRRPAAPFTTSTLQQEA
+ARKLRMSSRVSMQVAQRLYENGYITYMRTDSVNLSQEAVQAARRQATELYGADAVPAQPRVYAKRNETAQEAHEAIRPAG
+DSFRTPAQVKAELRPDEFRLYELIWKRTVASQMADAKGYTATLRLSATAQDGRLAQFSASGTVITFKGFLDAYEEGRDAE
+VDGENAEAKDRRLPQVAQGERLTGDPIEATGHETSPPARYTEASIVAELERREIGRPSTYAPTISTIMDRGYVSKRGTAL
+VPSWTAFAVIGLLEDYFAKYVDYDFTARMEDDLDRIAAGELGREAWLQTFYFGAPAAETEKGVEGLKHVVDNLGEIDARA
+VNSLPITEDITLRVGQYGPYLERSLPADAEAGATPPRANVPEDLAPDELTPAKAEELFATAQPSERELGTDPETGRTIVA
+KDGRYGPYVTEVIPEMTEEELQAWLDAQPTEYYKNGKPKPKKKPAKEKPRTGSLFTSMSVDTVTLEQALQLMSLPRVVGA
+DAEGEVITAQNGRFGPYLKKGSDSRSLESEDQIFSITQEQALEIYAQPKQRGRGAAKPPLAEFGEDPVSGKKVTVKEGRF
+GPYITDGVTNITVPRGRRPEELTAEEAYQLLADKRAKGPATRGG-AKKPAARKAPAKK----TTARKKA
+>KD337_NAFOICDF_00989
+MPTASASTSSSVPQGKKLVIVESPAKSKSIAKYLNAVGEGWVVDSSVGHIRDLPKPSDLPADMKKGPYGKFAVDTEHGFT
+PYYVVHPDKKKKVTELKRELKDAEALYLATDADREGEAIAWHLLDTLKPKVPVYRMTFGEITKEGVRRGLENIRELDTHL
+VDAQETRRILDRLFGYELSPVLWRKVSRGLSAGRVQSVATRLVVERERERMAFVAAQYWGVEGTFTVGPDAKADGAAGSS
+FTARLSTVDGARVATGRDFDDAGRLKESAGKKVAHLDEAAAASLAEGLDGKDFTVDSVEDKPYTRRPAAPFTTSTLQQEA
+SRKLRMSARVTMQVAQRLYENGYITYMRTDSVNLSQEAVQAARRQATELYGQESVPTQPRVYAKRTENAQEAHEAIRPAG
+DSFRTPAQVKAELRPDEFRLYELIWKRTVASQMADAKGYTATLRFSAQAEDGRTAQFAASGTVITFKGFLDAYEEGRDAE
+PE-EEKDAKDRRLPQVAEGETLTGAPIQPTGHETTPPARYTEASIVAELERREIGRPSTYAPTISTIMDRGYVSKRGSAL
+VPSWTAFAVIGLLEDYFAKYVDYDFTARMEDDLDRIAAGELAREAWLQTFYFGADSADTQKGVEGLKHVVENLGEIDARQ
+VNSLPVTEDITLRVGQYGPYLERRLPEGAAEGTAPERANVPEDLAPDELTPAKAEELMAAGGADERELGVDPETGRTVVA
+KDGRYGPYVTEVIPEMGEEELQAWLDAQPTEYYKNGKPKPKKKPAKEKPRTGSLFKTMSVDTVTLEQALQLMSLPRIVGA
+DAEGEVITAQNGRFGPYLKKGTDSRSLESEDQIFTVTQEQALEIYAQPKQRGRGTAKPPLAEFGEDPVSGKKVTVKEGRF
+GPYVTDGVTNITVPRGRAPEELTAEEAYQLLADKRAKGSAKKPA-AKKPAARKPAAKKTTTSTTTRKKA
+>SA211_MHAAABBN_01516
+MSTSSASVTAPVPEGKKLVIVESPAKSKSIAKYLNAVGSGWVVDSSVGHIRDLPKPSDLPADMKKGPFGKFAVDTEHGFT
+PYYVVHPDKKKKVAELKRELKDAEALYLATDADREGEAIAWHLLDTLKPTVPVYRMTFGEITQEGVRRGLENIRELDTAL
+VDAQETRRILDRLFGYELSPVLWRKVSRGLSAGRVQSVATRLVVERERERMAFVSAHYWGVEGTFTVAEGAQAADAVGSS
+FTARLSTVDGERVATGRDFDDAGRLKASAGKKVTHLDEAGARSLAEGLRGADFTVDSVEDKPYTRRPAAPFTTSTLQQEA
+ARKLRMSSRVSMQVAQRLYENGYITYMRTDSVNLSQEAVQAARRQATELYGADAVPAQPRVYAKRNETAQEAHEAIRPAG
+DSFRTPAQVKAELRPDEFRLYELIWKRTVASQMADAKGYTATLRLSATAQDGRLAQFSASGTVITFKGFLDAYEEGRDAE
+VDGENAEAKDRRLPQVAQGERLTGDPIEATGHETSPPARYTEASIVAELERREIGRPSTYAPTISTIMDRGYVSKRGTAL
+VPSWTAFAVIGLLEDYFAKYVDYDFTARMEDDLDRIAAGELGREAWLQTFYFGAPAAETEKGVEGLKHVVDNLGEIDARA
+VNSLPITEDITLRVGQYGPYLERSLPADAEAGATPPRANVPEDLAPDELTPAKAEELFATAQPSERELGTDPETGRTVVA
+RDGRYGPYVTEVIPEMTEEELQAWLDAQPTEYYKNGKPKPKKKPAKEKPRTGSLFTSMSVDTVTLEQALQLMSLPRVVGA
+DAEGEVITAQNGRFGPYLKKGSDSRSLESEDQIFSITQEQALEIYAQPKQRGRGAAKPPLAEFGEDPVSGKKVTVKEGRF
+GPYVTDGVTNITVPRGRQPEELTAEEAYQLLADKRAKGPATRGG-AKKPAARKAPAKK----TTARKKA
+>TT9_LFPAFLNI_01740
+MSTSSASVTAPVPEGKKLVIVESPAKSKSIAKYLNAVGSGWVVDSSVGHIRDLPKPSDLPADMKKGPFGKFAVDTEHGFT
+PYYVVHPDKKKKVAELKRELKDAEALYLATDADREGEAIAWHLLDTLKPTVPVYRMTFGEITQEGVRRGLENIRELDTAL
+VDAQETRRILDRLFGYELSPVLWRKVSRGLSAGRVQSVATRLVVERERERMAFVSAHYWGVEGTFTVAEGAQAADAVGSS
+FTARLSTVDGERVATGRDFDDAGRLKASAGKKVTHLDEAGARSLAEGLRGADFTVDSVEDKPYTRRPAAPFTTSTLQQEA
+ARKLRMSSRVSMQVAQRLYENGYITYMRTDSVNLSQEAVQAARRQATELYGADAVPAQPRVYAKRNETAQEAHEAIRPAG
+DSFRTPAQVKAELRPDEFRLYELIWKRTVASQMADAKGYTATLRLSATAQDGRLAQFSASGTVITFKGFLDAYEEGRDAE
+VDGENAEAKDRRLPQVAQGERLTGDPIEATGHETSPPARYTEASIVAELERREIGRPSTYAPTISTIMDRGYVSKRGTAL
+VPSWTAFAVIGLLEDYFAKYVDYDFTARMEDDLDRIAAGELGREAWLQTFYFGAPAAETEKGVEGLKHVVDNLGEIDARA
+VNSLPITEDITLRVGQYGPYLERSLPADAEAGATPPRANVPEDLAPDELTPAKAEELFATAQPSERELGTDPETGRTVVA
+RDGRYGPYVTEVIPEMTEEELQAWLDAQPTEYYKNGKPKPKKKPAKEKPRTGSLFTSMSVDTVTLEQALQLMSLPRVVGA
+DAEGEVITAQNGRFGPYLKKGSDSRSLESEDQIFSITQEQALEIYAQPKQRGRGAAKPPLAEFGEDPVSGKKVTVKEGRF
+GPYVTDGVTNITVPRDRQPEELTAEEAYQLLADKRAKGPATRGG-AKKPATRKAPAKK----TTARKKA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000700.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000700.fa
new file mode 100644
index 0000000000000000000000000000000000000000..04513a6b1549a59505e38261ac1c101442c13078
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000700.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01059
+MAD-PQRTDPNAPVLVVGLGRFGAATAEELVAQGREVLAIERDPVLVQRFAPSLTHVVEA
+DATDPEALRQLGAQDFSTAVVGVGTSIEASVLITANLVDLEIQHIWVKAISEAHGTILKR
+IGANHVIFPEHDAGVRAAHLVNGRMLDFIEFDDDFAIVKMYPPAECVGFTLGESNVRSKY
+GVTVVGVKTPGEDFTYAQPDTRVGARDTLIVSGHTDLIDRFAARP
+>KBS0714_MOLHKGIG_01815
+MADTPQRTDPNAPVLVVGLGRFGAATAEELVAQGREVLAVERDPVLVQRYAPSLTHVVEA
+DATDSEALRQLGAQDFSTAVVGVGTSIEASVLITVNLVDLEIPHIWVKAISEAHGTILKR
+IGANHVIFPEHDAGVRAAHLVNGRMLDFIEFDDDFAIVKMYPPAECVGFTLAESHVRSKY
+GVTVVGVKTPGEDFTYAQPDTRVGPRDTLIVSGHTDLIDRFAARP
+>KD337_NAFOICDF_00994
+MADQP-RTDPNAPVLVIGLGRFGAATAEELVTQGREVLAIERDPVLAQRFAPTLTHVVEA
+DATDAEALRQLGAQDFDVAVVGVGTSIEASVLITANLVDLEIPHIWVKAISDAHGTILKR
+IGAQHIIFPEKDAGVRAAHLVNGRMLDFIEFDDDFAIVKMYPPTETVGFTLEESNVRQKY
+GVTIVGVKTPGEDFTYAQPHTRVGPRDTLIVSGHTDLIDRFAARP
+>SA211_MHAAABBN_01512
+MADTPQRTDPNAPVLLVGLGRFGAATAEELVAQGREVLAVERDPVLVQRYAPSLTHVVEA
+DATDSEALRQLGAQDFSTAVVGVGTSIEASVLITVNLVDLEIPHIWVKAISEAHGTILKR
+IGANHVIFPEHDAGVRAAHLVNGRMLDFIEFDDDFAIVKMYPPAECVGFTLAESKVRSKY
+GVTVVGVKTPGEDFTYAQPDTRVGPRDTLIVSGHTDLIDRFAARP
+>TT9_LFPAFLNI_01736
+MADTPQRTDPNAPVLVVGLGRFGAATAEELVAQGREVLAVERDPVLVQRYAPSLTHVVEA
+DATDPEALRQLGAQDFSTAVVGVGTSIEASVLITVNLVDLEIPHIWVKAISEAHGTILKR
+IGANHVIFPEHDAGVRAAHLVNGRMLDFIEFDDDFAIVKMYPPAECVGFTLAESHVRSKY
+GVTVVGVKTPGEDFTYAQPDTRVGPRDTLIVSGHTDLIDRFAARP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000703.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000703.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cc0404ef6f96fa188e091fa504971825474e2213
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000703.fa
@@ -0,0 +1,11 @@
+>AS2_ACLBLIBL_01062
+MGSVIKKRRKRMSKKKHRKLLRKTRHQRRNKK
+>KBS0714_MOLHKGIG_01812
+MGSVIKKRRKRMSKKKHRKLLRKTRHQRRNKK
+>KD337_NAFOICDF_00997
+MGSVIKKRRKRMAKKKHRKLLRKTRHQRRNKK
+>SA211_MHAAABBN_01509
+MGSVIKKRRKRMSKKKHRKLLRKTRHQRRNKK
+>TT9_LFPAFLNI_01733
+MGSVIKKRRKRMSKKKHRKLLRKTRHQRRNKK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000704.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000704.fa
new file mode 100644
index 0000000000000000000000000000000000000000..83a993efcbd2e6ec4f1e08c01d31154c32eeaca9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000704.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01063
+MSTLL--PASAARVQLLVKPGCHLCEDAAATVAQVCGARGEAWEAVDGAAHPDLLERFVD
+EVPVLFVDGVQRDFWRVDPARLGRLLDAPRP
+>KBS0714_MOLHKGIG_01811
+MTADL--PAATARVQLLVKPGCHLCAEAEATVVQVCDARGEAWEAVDGAAHPDLLERFVD
+EVPVLFVDGVQRDFWRVDPARLGRLLDAPRA
+>KD337_NAFOICDF_00998
+MAAMMTPPASAARVQLLVKPGCHLCAEAEAVVAEVCDARGTAWERVDGPAHPDLLETYAE
+EVPVLFVDGVQRDFWRVDAQRLGRLLDGPAA
+>SA211_MHAAABBN_01508
+MTADL--PAATARVQLLVKPGCHLCAEAEATVAQVCDARGEAWEAVDGAAHPALLERFAD
+EVPVLFVDGVQRDFWRVDPARLGRLLDAPRA
+>TT9_LFPAFLNI_01732
+MTADL--PAATARVQLLVKPGCHLCAEAEAAVAQVCDARGEAWEAVDGAAHPALLERFAD
+EVPVLFVDGVQRDFWRVDPARLGRLLDAPRV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000705.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000705.fa
new file mode 100644
index 0000000000000000000000000000000000000000..402f7902f3abff427743351ac44b5c5543579d41
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000705.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01064
+MSGTSPTDPQRGQNPYGQEAP-----GPSPYGENPYGAHPYGQAPYGQGGPAQGQPGQG-
+HPNPGHPAPSYADQGYPAQGGWPGQQAPGPLTAPRRPGAITASFWLILAGGLVLLASTLL
+AAFAMTLPESRAMLEQQMRETYEQMGLPADQLAQMEQMTDQLLPVMSVVAAAFGVVAFLV
+YLLIALKIRKGSRAARTVGTVLAALSVLMIVTNLMMGAFNPFDLLWVGLGVAGIVMAFRP
+EASEYMRLKAWERAGTR
+>KBS0714_MOLHKGIG_01810
+MSGTSPTDPHGSQNPYGTDPYGAAPQGPTPGSPDPAGASPYGQNPY-------GAPPAAP
+YGAPGQAGMPQA----PSPHGPAGWQSPGPVELPPRPRSLTAAFWLIVSGGLLLLATTLL
+AAFAITQPEGQVAIQQELDRSVEQMNLPADQAEQMRTMMDGMLPALATTAAVFGVLAFLV
+YLWVAFAIRGGSRAARIVGTVLASLSVLVLVSNAVMGAFSPLDLVWVGLGVAGIVLAYRP
+DATEYMRLKTWQRFARR
+>KD337_NAFOICDF_00999
+MSGTE------NSNPYGRPAG-----QSGPQWPDAAAQAPYGQAPDASAQAPYGAPPQG-
+WGAPQQWG------------GQPGWPAAAPVPA-RRPGPINAAFWLIVSAGVVFLASTVL
+SALVATSDAGRRELEAAMTKVWGDYGMTPEQIREYQDMLPPMMPVMAGVMVAVGVLALLV
+YLLIASKIRGGSRAARTVGTVLAVLSVLMVLAPLASGQFSPLDLLWCLLGVAGIATAYRK
+EATEFMRLRAWERAARR
+>SA211_MHAAABBN_01507
+MSGTSPTDPHGSQNPYGTDPYGAAPQGPTPGSPGPAGASPYGQNPY-------GAPPAAP
+YGAPGQAGMPQA----PSPHGPAGWQSPGPVELPPRPRSLTAAFWLIVSGGLLLLATTLL
+AAFALTQPEGQAAIQQELDRSVEQMDLPADQAEQMRAMMDGMLPALATTAAVFGVVAFLV
+YLWVAFAIRGGSRAARIVGTVLAALSVLVLVSNAVMGAFSPLDLVWVGLGVAGIVLAYRP
+DATEYMRLKAWQRFARR
+>TT9_LFPAFLNI_01731
+MSGTSPTDPHGSQNPYGADPYGAVPQGSTPGSPDPAGASPYGQNPY-------GAPPATP
+YGAPGQAGMPQA----PSPHGPAGWQSPGPVELPPRPRSLTAAFWLIVSGGLLLLATTLL
+AAFALTQPEGQAAIQQELDRSVEQMDLPADQAEQMRAMMDGMLPALATTAAVFGVLAFLV
+YLWVAFAIRGGSRAARIVGTVLAALSVLVLVSNAVMGAFSPLDLVWVGLGVAGIVLAYRP
+DATEYMRLKAWQRFARR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000706.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000706.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a79e3ea07404416d1e3f20cff3e3df16a61bcfab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000706.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01067
+MQSNPFAEIALDGSLLLAAPIAVLAGLISFLSPCVLPLVPGYLGYVTGLGGDVLTSRRRG
+RLVLGSVLFVLGFAVVFVGITVVFTQAMVWLRRDGAWVTPVLGVLVMLMGLVFLGGGGRL
+QQERRVHFKPAAGLAGAPLLGMTFGLGWAPCIGPTMAAVLAMS-TASSGSVGRGALLAFL
+YCLGLGLPFVLMALGMERGMRALGFFRRHRVLIMRLGGALLIALGLLMVTGVWTAWTTQL
+QLWFANEWEMPL
+>KBS0714_MOLHKGIG_01807
+MQSNPFAEIALDGSLLLAAPIAVLAGLISFLSPCVLPLVPGYLGYVTGLGGDVLTSRRRG
+RLVLGSVLFVLGFAVVFVGITVVFTQAMVWLRRDGAWVTPVLGVLVMLMGLVFLGGGGRL
+QQERRVHFKPAAGLVGAPLLGMTFGLGWAPCIGPTMAAVLAMS-TASSGSVGRGALLAFL
+YCLGLGLPFVLMALGMERGMRAVGFFTRHRVLIMRLGGALLIALGLLMVTGVWTAWTTQL
+QLWFANEWEMPL
+>KD337_NAFOICDF_01002
+MQDNRFAEIALDGSLLAAAPVAFLAGLISFLSPCVLPLVPGYLGYVSGLGGAALDGARRG
+RVALGAALFVLGFTVVFMVMNILFAQVAFRILRDLSWVMQLLGVLVILMGVVFMGGLRWF
+QTERKVHVKPAAGLTGAPLLGMTFGLGWAPCIGPTLAAVFALSYTQDSSSVARAALLAFV
+YCLGLGLPFVLISFGVERGMRALGFFRRHRRGVMVFGGAVLILLGAVMVTGLWTQWMVQL
+QTWFQNEWVMPL
+>SA211_MHAAABBN_01504
+MQSNPFAEIALDGSLLLAAPIAVLAGLISFLSPCVLPLVPGYLGYVTGLGGDVLTSRRRG
+RLVLGSVLFVLGFAVVFVGITVVFTQAMVWLRRDGAWVTPVLGVLVMLMGLVFLGGGGRL
+QQERRVHFKPAAGLVGAPLLGMTFGLGWAPCIGPTMAAVLAMS-TASSGSVGRGALLAFL
+YCLGLGLPFVLMALGMERGMRALGFFLRHRVLIMRLGGALLIALGLLMVTGVWTAWTTQL
+QLWFANEWEMPL
+>TT9_LFPAFLNI_01728
+MQSNPFAEIALDGSLLLAAPIAVLAGLISFLSPCVLPLVPGYLGYVTGLGGDVLTSRRRG
+RLVLGSVLFVLGFAVVFVGITVVFTQAMVWLRRDGAWVTPVLGVLVMLMGLVFLGGGGRL
+QQERRVHFKPAAGLVGAPLLGMTFGLGWAPCIGPTMAAVLAMS-TASSGSVGRGALLAFL
+YCLGLGLPFVLMALGMERGMRALGFFRRHRVLIMRLGGALLIALGLLMVTGVWTAWTTQL
+QLWFANEWEMPL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000709.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000709.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f032dc32618b502346368b7eead1dc580f3fdc1d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000709.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01071
+MAATLSQWVAAARLRTLPMAIAPVIVGSAAAAELGSFHLGAALLALVVSLALQIGVNYAN
+DYSDGIRGTDDERVGPFRLTVSGLVPAAQVKQAAFAFFGLAGLAGLGLILLSGHWWFLLV
+GVACVLAAWFYTGGKRPYGYLGLGEVFVFVFFGLVAVLGTTYTQADAVSRLAWAGAIGCG
+LISTALLMANNIRDIPTDREVGKMTLAARLGDGPARASYGVMLAVALLLPLFWVAVHPGL
+LLVPIGGLLAIRPIRTVLRADDRRTLIPVLRATGVIGIVYALTFTLGVLL
+>KBS0714_MOLHKGIG_01802
+MAATLSQWVAAARPRTLPMAIAPVIVGSAAAAELGSFHLGAALLALVVSLALQIGVNYAN
+DYSDGIRGTDDERVGPFRLTVSGLVPAARVKQAAFAFFGLAGLAGLGLILLSGHWWFLLV
+GVACVLAAWFYTGGKRPYGYLGLGEVFVFVFFGLVAVLGTTYTQADAVSGLAWAGAIGCG
+LISTALLMANNIRDIPTDREVGKMTLAARLGDGPARASYGVMLAVALLLPLFWVAVHPGL
+LLVPIGGLLAIRPIRTVLRADDRRALIPVLRATGVIGIVYAITFTLGALL
+>KD337_NAFOICDF_01007
+MAATLSQWVAAARLRTLPMAVAPVIVGSAAAHALDQFRPGRALLALVVSLALQIGVNYAN
+DYSDGIRGTDDARVGPFRLTVSGLVPAKTVKHAAFACFGVAAVAGLALVALSGTWWLLIV
+GVASIVAAWYYTGGKKPYGYMGLGEVFVFVFFGLVAVLGTTYTQALAVNGLAWAGAVGCG
+LISTALLMANNIRDIPTDREVGKMTLAARIGDGPARASYVAMLAVAVVLPLLFTGAHPWL
+WLVLAAGAVAVKPCLTVLHAHERAALIPVLKATGIVGVVYAAAFALGVAL
+>SA211_MHAAABBN_01499
+MAATLSQWVAAARLRTLPMAIAPVIVGSAAAAELGRFHLGAALLALVVSLALQVGVNYAN
+DYSDGIRGTDDERVGPFRLTVSGLVPAAQVKQAAFASFGLAGLAGLGLILLSGHWWFLLV
+GVACVVAAWYYTGGKKPYGYLGLGEVFVFVFFGLVAVLGTTYTQAGQVSGLAWAGAIGCG
+LISTALLMANNIRDIPTDRAVGKMTLAARLGDGPARASYGVMLAVALLLPLFWVAVHPWL
+LLVPLGGLLAIRPVRTVLRAQDRRALIPVLRATGVIGIVYALTFTLGVLL
+>TT9_LFPAFLNI_01723
+MAATLSQWVAAARPRTLPMAIAPVIVGSAAAAELGSFHLGAALLALVVSLALQIGVNYAN
+DYSDGIRGTDDERVGPFRLTVSGLVPAAQVKQAAFAFFGLAGLAGLGLILLSGHWWFLLV
+GVACVLAAWFYTGGKRPYGYLGLGEVFVFVFFGLVAVLGTTYTQADAVSGLAWAGAIGCG
+LISTALLMVNNIRDIPTDREVGKMTLAARLGDGPARASYGVMLAVALLLPLFWVAVHPGL
+LLVPIGGLLAIRPIRTVLRADDRRALIPVLRATGVIGLVYAITFTLGVLL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000713.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000713.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b45d25e2b215001e206d738e21174bd30cd2397c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000713.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01078
+MPQTTSHAPVPPSVSAEPVTRRHHGHTFQDDFEWLRGKAEPRVLEHLAAENAYTEAVTADQAPLRAAIFGEIKARTVETD
+RSVPSRRDGWWYFARTKEGAEYPVHCRVPAADTGDLEADWTPPVVTPDAPLEGEQVILDGNAEAEGHPFFALGGLHISPD
+STRVAYAVDHTGDERFTLRVREIATGEDLPDVVENIAHGVRFDRSGARVLYTVWDDSWRPYQVKAHVLGTDPAQDQLLYE
+ESDPGMWTGFTGTADRTQLLIGVGNSEVSETHVVDLPESPDAPLPAPRLLIPRAWGMLADVEPVTGADGVRRLLVVHDRT
+VARQDAADAGADAPAPNGMLSLVAEADVADRGAWRTVVPHREDVKVDGVMVTLTHAALAVRRETTPRVVVAPLDSVLAGE
+AADWREPAFEEELYACHLASTAAESPFLRLAYTSWISPARVLDVSAATGEVHLRRETEVPGYDPSLYVAERVWAPASEPS
+SVTGEPVRIPVTVIRRKDVAADGTAPCVVYGYGSYEMSMDPVLGVARLSLLDRGVVYAVAHVRGGGELGRRWYEDGKKLA
+KRHSFTDFVDATRHLVDLGWADPARVACTGGSAGGLLMGAVLNLAPELYRACLAVVPFVDALTSILDPELPLSALEWEEW
+GNPIEDPEVYAAMRDYTPYENVRAVDYPTIAAVTSLHDTRVLYVEPAKWVARLRRTVTSDQATPLAEGGAPVLLRTEMDG
+GHGGASGRYQGWEDTAWEYAFLLTALGATQRVD
+>KBS0714_MOLHKGIG_01798
+MPQTTSHAPVPPSASAEPVTRRHHGHTFQDDFEWLRGKAEPRVLEHLAAENAYTEAVTADQAPLREAIVGEIKARTVETD
+RSVPARRDGWWYFVRTREGAEYPIHCRVPARDTGDLEADWTPPVITPDAALPGEQVILDGNAEAEGHPFFALGGLHISPD
+ATRVAYAVDHTGDERFTLRVREIATGEDLPDAVENVAHGVRFDRSGTRVFYTVWDDSWRPYQVRAHVLGTDPAEDVLLHE
+EADPGMWTGFEGVADRTQLLIGVGNSEVSETLVVDLPEDPAAPLPAPRVLIPRAWRMLADVEPVTDADGVRRLLVVHDRA
+L-----DDDGAPVAAPNGMLSVVAEADVADRGAWRTVVPHREDVKVDGVMVTLTHAALAVRRETTPRVVVAELDAVLAGQ
+AAHWREPAFDEELYACHLSATAAESPFLRLAYTSWITPARVLDVSAATGEVHLRRETEVPGYDPADYVAERVWAPASEPS
+SVTGEDVRIPVTVIRRRDVKPDGTAPCVVYGYGSYEMSMDPVLGVARLSLLDRGVVFAVAHVRGGGELGRRWYEDGKKLA
+KRHSFTDFVDATRHLVGLGWADPARVACMGGSAGGLLMGAVLNLAPELYRACLAVVPFVDALTTILDPELPLSALEWEEW
+GNPIEDAAVYAAMRAYTPYENVRAVDYPAIAAVTSLNDTRVHYVEPAKWVAQLRRTVTSDQATPLAEGGAPILLRTEMDG
+GHGGASGRYQGWEDTAWEYAFLLTALGATARIV
+>KD337_NAFOICDF_01013
+MYE--TSLPTPPRAAARPTARTVHGETFTDDFEWMRAKTEQEVLDHLQAENAYTEAATADQADLRAAIYGEIKAHTVETD
+QSVPARRDGWWYFVRTVEGKDYAVHCRVPAQDTGDALADWTPPVVPADAALPGEQVILDGNAEAAGHPFFSLGGMHISPD
+GALAAYAVDLAGDERYTLRVREIATGTDLPDVVRNIAPGVRFDRSGTRLIYTVWDETWRPYQVRVHTLGTDAAEDAVLYE
+ESDPGMWTGFDASADRTQLLIGVGNSEVSETWAVDLPVD-ASPLPAPRVLVPRTARMLADVEPF-DMDGRRRLLIVHDRL
+A-----DG----TTAPNGMLSIVDEADVADRDAWRPVVPHADDVRVDGVLVTRTHVGLAVRRDTTPRVLIAPLEGLREGS
+APAWTEPSFDEELYMCRLAGVNLDSPFLRLSYASWTTPARVLDVVAATGEVRLRREVEVPGFDREDYVAERWWAPASEPS
+SLTGEQVRIPLTVIRRRDVAQDGTAPAVVYGYGSYEMSMDPVFGVARLSLLDRGVVYVVAHVRGGGELGRAWYEDGKKAA
+KRHSFTDFVDATRFVADSGWVDPARIACTGGSAGGLLMGAVLNLAPELYRACLAVVPFVDALTSILDPDLPLSALEWEEW
+GNPIEDPEVYATMKAYTPYENVRAVDYPAIAAVTSLNDTRVLYVEPAKWVAQLRRTVTSDQTTPIAAGGSPILLRTEMDG
+GHGGASGRYQGWEDTAWEYAFLLTALGATARVD
+>SA211_MHAAABBN_01495
+MPQTTSHAPVPPSASAEPVTRRHHGHTFQDDFEWLRGKAEPRVLEHLAAENAYTEAVTADQAPLREAIVGEIKARTVETD
+RSVPARRDGWWYFVRTREGAEYPIHCRVPARDTGDLEADWTPPVITPDAALPGEQVILDGNAEAEGHPFFALGGLHISPD
+ATRVAYAVDHTGDERFTLRVREISTGEDLPDAVENVAHGVRFDRSGTRVFYTVWDDSWRPYQVKAHVLGTDPAEDVLLHE
+EADPGMWTGFEGVADRTQLLIGVGNSEVSETLVVDLPEDPAAPLPAPRVLIPRAWRMLADVEPVTDADGVRRLLVVHDRA
+L-----DDDGAPVAAPNGMLSVVAEADVADRGAWRTVVPHREDVKVDGVMVTLTHAALAVRRETTPRVVVAELDAVLAGQ
+AAHWREPAFEEELYACHLSATAAQSPFLRLAYTSWITPARVLDVSAATGEVHLRRETEVPGYDPADYVAERVWAPASEPS
+SVTGEDVRIPVTVIRRRDVKPDGTAPCVVYGYGSYEMSMDPVLGVARLSLLDRGVVFAVAHVRGGGELGRRWYEDGKKLA
+KRHSFTDFVDATRHLVDLGWADPARVACMGGSAGGLLMGAVLNLAPELYRACLAVVPFVDALTTILDPELPLSALEWEEW
+GNPIEDAAVYEAMRAYTPYENVRAVDYPAIAAVTSLNDTRVHYVEPAKWVAQLRRTVTSDQATPLAEGGAPILLRTEMDG
+GHGGASGRYQGWEDTAWEYAFLLTALGATARID
+>TT9_LFPAFLNI_01717
+MPQTTTHAPVPPSVAAEPVTRRHHGHTFQDDFEWLRGKAEPRVLEHLAAENAYTEAVTADQAPLREAIVGEIKARTVETD
+RSVPARRDGWWYFVRTREGAEYPIHCRVPARETGDLEADWTPPVITPDAALPGEQVILDGNAEAEGHPFFALGGLHISPD
+ATRVAYAVDHTGDERFTLRVREIATGEDLPDAVENVAHGVRFDRSGTRVFYTVWDDSWRPYQVKAHVLGTDPAEDVLLHE
+EADPGMWTGFEGVADRTQLLIGVGNSEVSETLVVDLPEDPAAPLPAPRVLIPRAWRMLADVEPVTDADGVRRLLVVHDRA
+L-----DDDGAPVAAPNGMLSVVAEADVADRGAWRTVVPHREDVKVDGVMVTLTHAALAVRRETTPRVVVTELDAVLAGQ
+AAHWREPAFDEELYACHLSATAAESPFLRLAYTSWITPARVLDVSAATGEVHLRRETEVPGYDPADYVAERVWAPASEPS
+SVTGEDVRIPVTVIRRRDVKPDGTAPCVVYGYGSYEMSMDPVLGVARLSLLDRGVVFAVAHVRGGGELGRRWYEDGKKLA
+KRHSFTDFVDATRHLVDLGWADPARVACMGGSAGGLLMGAVLNLAPELYRACLAVVPFVDALTTILDPELPLSALEWEEW
+GNPIEDAAVYAAMRAYTPYENVRAVDYPAIAAVTSLNDTRVHYVEPAKWVAQLRRTVTSDQARPLADGGAPVLLRTEMDG
+GHGGASGRYQGWEDTAWEYAFLLTALGATRRVV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000715.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000715.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ab8431662fcaafdfc51ad72e04780dc8d5cd3d6d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000715.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01093
+M-PTEALDRVDRAIVRALTQDGRMSVAALAERVHISRAHCYSRLNRLQDAGVITGFTVRV
+DPVKVGFGASAHVTLKLRQHNWRELRATLLAIPEVWHVSLVGGNVDVILLVRARDTADLR
+RVIFDELQTLPGVVDTQTYMVFDDHASGQTLPPEDPAA---------
+>KBS0714_MOLHKGIG_01785
+M-AAEPLDRVDRAIVRELTQDGRMSVAALAERVHISRAHCYSRLNRLQDAGVITGFTVRV
+DPVKVGFGASAHVTMKLRQHDWRELRATLLAIPEVSHVSLVGGNMDVILLVRARDTADLR
+RVIFDELQTLPSVVDTQTYMVFDDQASGQTIPPDETAD---------
+>KD337_NAFOICDF_01016
+MSTSSPLDRVDRAIVRELSQDGRLSVAALAERVHVSRAHCYSRLNRLQNSGVITGFSARV
+DPVKTGFTASAHVMLKLRQHDWRELRAALLAIPEVWHVSLVGGNMDVVLLVRARDTADLR
+HVIFEKLQSLPAVVDTQTYMIFDDHASGQTMPPEEGADAPRTPTAFG
+>SA211_MHAAABBN_01492
+M-AAEPLDRVDRAIVRELTQDGRMSVAALAERVHISRAHCYSRLNRLQDAGVITGFTVRV
+DPVKVGFGASAHVTMKLRQHDWRELRATLLAIPEVSHVSLVGGNMDVILLVRARDTADLR
+RVIFDELQTLPSVVDTQTYMVFDDQASGQTIPPDETAD---------
+>TT9_LFPAFLNI_01714
+M-AAEPLDRVDRAIVRELTQDGRMSVAALAERVHISRAHCYSRLNRLQDAGVITGFTVRV
+DPVKVGFGASAHVTMKLRQHDWRELRATLLAIPEVSHVSLVGGNMDVILLVRARDPADLR
+RVIFDELQTLPSVVDTQTYMVFDDQASGQTIPPDETAD---------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000716.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000716.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ca247d47ab0ba2fc6b9b8a46207f73747302cdfc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000716.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01094
+M--SDPTPAVSGSARTDQAEARPNAGAAFGISLEEYLLPATRRIQLIGEDGTLLSPEEQG
+AEPGHEYPLPSDEELLAAYRHLVIGRRVNDQAYALVRQGRMAVYPSSHGQEASEVAAAVC
+LGKQDWLFPTYRDTVAVIARGVPPLEVMVSYQGTWHQGYDPNEHHVSVQSTPLTTQLLHA
+VGMAKAARLRGEEVVCLAMVGDGGTSEGDFHEALNFAAVFKLPVIFFVQNNKFAISVPFA
+KQSAAPSLAHKAVGYGLAGERVDGNDLGALLAVLGRAVDLCRQGQGPFLVEADTYRMQAH
+TNTDDPTRYREDAEVQEWEARDPLRRMTAYLESTGALTEEVSAEIAQAAEDVAKDLRDAM
+NAEAELDPLELFDHVYSVQTPQLAAQRAQLTEELSRSENQEA
+>KBS0714_MOLHKGIG_01784
+M--SDPTPAVPGAARTDEAETRPNAGAAFGISLEEYLLPAARRIQLIGEDGTLLAPEEQG
+TEPGHEYPLPSDEELLAAYRHLVIGRRVNDQAYALVRQGRMAVYPSSHGQEASEVAAAVC
+LGEDDWLFPTYRDTVAVIARGVPPLEVMVAYQGTWHQGYDPQKHHVSIQSTPLTTQMLHA
+VGMAKAARLRGEEVVCLAMVGDGGTSEGDFHEALNFAAVFKLPVIFFVQNNKFAISVPFA
+KQSAAPSLAHKAVGYGLAGERVDGNDLGALLAVLGRAVELCRQGQGPFLVEADTYRMQAH
+TNTDDPSRYRDDAEVKEWEARDPLRRMTAYLESTGALTEEVSAQIARDAEDVAQQLRDAM
+NAETELDPLELFDHVYSVQTPQLAAQRAQLAEELSRSENQEA
+>KD337_NAFOICDF_01017
+MTSTRPGPATP--------DTRTEAAAAFGITLEEYLLPAARRIQLISPEGELLPAEEQG
+TAPGHEYPLPSDEELLAAYRHLVIGRRVNDQAYALVRQGRMAVYPSSHGQEASEVAAAVC
+LGQDDWLFPTYRDTVAVIARGVAPLDVMVSFQGTWHQGYDPKEHRVSVQSTPLTTQLLHA
+VGMAKAARLRGEDVVCLAMVGDGGTSEGDFHEALNFAAVFKLPVIFLVQNNKFAISVPFA
+KQSAAPSLAHKAVGYGLAGERVDGNDLAALLAVLGRAVDLCREGKGPFLVEADTYRMQAH
+TNTDDPTRYREDSEVKEWEVRDPLRRMTAYLESTGALTAEVSTSIAKDAEDVAQQLRDAM
+NADVELDPLELFDHVYSVQTPQLAAQRAQLAEELSRSENKEA
+>SA211_MHAAABBN_01491
+M--SDPTPAVPGAVRTDEAETRPNAGAAFGISLEEYLLPAARRIQLIGEDGTLLAPEEQG
+TEPGHEYPLPSDEELLAAYRHLVIGRRVNDQAYALVRQGRMAVYPSSHGQEASEVAAAVC
+LGEHDWLFPTYRDTVAVIARGVPPLEVMVAYQGTWHQGYDPQKHHVSIQSTPLTTQMLHA
+VGMAKAARLRGEEVVCLAMVGDGGTSEGDFHEALNFAAVFKLPVIFFVQNNKFAISVPFA
+KQSAAPSLAHKAVGYGLAGERVDGNDLGALLAVLGRAVELCRQGQGPFLVEADTYRMQAH
+TNTDDPSRYRDDAEVKEWEARDPLRRMTAYLESTGALTEEVSAQITRDAEDVAQQLRDAM
+NAETELDPLELFDHVYSVQTPQLAAQRAQLAEELSRSENQEA
+>TT9_LFPAFLNI_01713
+M--SDPTPAVPGAVRTDEAETRPNAGAAFGISLEEYLLPAARRIQLIGEDGTLLAPEEQG
+TEPGHEYPLPSDEELLAAYRHLVIGRRVNDQAYALVRQGRMAVYPSSHGQEASEVAAAVS
+LGEDDWLFPTYRDTVAVIARGVPPLEVMVAYQGTWHQGYDPQKHHVSIQSTPLTTQMLHA
+VGMAKAARLRGEEVVCLAMVGDGGTSEGDFHEALNFAAVFKLPVIFFVQNNKFAISVPFA
+KQSAAPSLAHKAVGYGLAGERVDGNDLGALLAVLGRAVELCRQGQGPFLVEADTYRMQAH
+TNTDDPSRYRDDAEVKEWEARDPLRRMTAYLESTGALTEEVSAQIARDAEDVAQQLRDAM
+NAETELDPLELFDHVYSVQTPQLAAQRAQLAEELSRSENQEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000718.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000718.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ce8fba58d73d1ad0d55c7f17c91d97c742cdd033
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000718.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01096
+MSNTFLLPDLGEGLTEADIVRWLVAEGDEVVVDQPIVEVETAKALVEVPSPYAGTVLTLHGAEGQTMEVGRPLITVGAAG
+ES-GEGSAPVAGTEAQAVPPATGEDAAEADRPGALSYREEEMAGVQPKPDKARGGDGDVAGSDEEASGAVLIGYGTSGHS
+ATSRTRPSKRGRRGAGTTTAGGSGAASGQGEQAGQARAPRVTSPIVRKLAREQGVDVAALTGTGPDGLITRADVLSAAQG
+GDAPQAAAAPAAQPAATAGAAS--TVGAGSADARTGLAVVARTPISGVRKVIADQLSRSRREVPEVTAWLDVDVTALLEL
+RAALKAKDAENAPSLLGLIARFTLAGLRRYPVMNARIEAGADGKDEIVEVDGVHLGLAVQTDRGLMVPSVEHAERLSADE
+LTAAINETVTRAREGKAAPAELTRGTFTLNNYGPLGTDGATPIINVPEVGMLGIGRIIDRPWVVDGEIVVRKVTEMTVTF
+DHRVTDGATASAFLTFVADCLNDPQSALARI
+>KBS0714_MOLHKGIG_01782
+MSNTFLLPDLGEGLTEADIVRWLVAEGDTVAVDQPMVEVETAKALVEVPSPYAGTVLTLHGAEGETMDVGSPLITIGAAG
+ES-GEGSAPAAGTEALAVPPATGAAAAEAARPGALSYREEEMAGVQPKPDKARGGDGDVAGSDDEASGAVLIGYGTSGHR
+ATSRSRPSKRGRGAARPT-----PAPTAGA------GAPRVTSPIVRKLAREKGVDVAALTGTGPDGLITRADVLAAAEG
+-SAPQAAPAQAPLVAAVPAAEA--AAQPGAVDGRTGLAVVARTPISGVRKVIADQLSRSRREVPEVTAWLDVDVTALLEL
+RASLKAKDSENAPSLLGLIARFTLAGLRRYPVMNARIEAGADGKDEIVEVDGVHLGLAVQTDRGLMVPSVEHAEKLSADE
+LTAAVNDTVSRARAGRAAPAELTRGTFTLNNYGPLGTDGATPIINVPEVGMLGIGRIIDRPWVVDGEIVVRKVTEMTVTF
+DHRVTDGATASAFLTFVADCLHDPTAALARI
+>KD337_NAFOICDF_01019
+MSNTFLLPDLGEGLTEADIVRWLVAEGDEVAVDQPMVEVETAKALVEVPSPFAGTVLTLHGAEGETMEVGAPLITVGAVG
+ESAGDAPPPSSAADAGTAP------AADGAVPGALSYREEERAGVQPKPDKARGGDGDVAGSDDEASGAVLIGYGTSGHT
+ATSRSRPSKRARGGAGTTQAAAGAAPAASG------RAPRVTSPIVRKLARERGVDVATLTGTGPDGLITRADVLGAAGG
+ASAPQDAQAPAPVQTAPSAAAQAPAVAAGATDARTGLAVVARTPISGVRKVIADQLSRSRREVPDVTAWLDVDVTALLEL
+RAQLKAKDPENAPSLLGLIARFTLAGLRRYPVMNARIEAGADGKDEIVEVDGVHLGLAVQTDRGLMVPSVEHAEKMSADE
+LTRAINDTVSRAREGRAAPAELTRGTFTLNNYGPLGTDGATPILNIPEVGMLGIGRIIDRPWVVDGEIVVRKVTEMTVTF
+DHRVTDGATASAFLTFVADCLNDPQAALARI
+>SA211_MHAAABBN_01489
+MSNTFLLPDLGEGLTEADIVRWLVAEGDTVAVDQPMVEVETAKALVEVPSPYAGTVLTLHGAEGETMDVGSPLITIGAAG
+ES-GEGSAPAAGTEALAVPPATGAAAAEAARPGALSYREEEMAGVQPKPDKARGGDGDVAGSDDEASGAVLIGYGTSGHR
+ATSRSRPSKRGRGAARPT-----PAPTAGA------GAPRVTSPIVRKLAREKGVDVAALTGTGPDGLITRADVLAAAEG
+-SAPQAAPAQAPLVAAVPAAEA--AAQPGAVDGRTGLAVVARTPISGVRKVIADQLSRSRREVPEVTAWLDVDVTALLEL
+RAALKAKDPENAPSLLGLIARFTLAGLRRYPVMNARIEAGADGQDEIVEVDGVHLGLAVQTDRGLMVPSVEHAEKLSADE
+LTAAINDTVSRARAGRAAPAELTRGTFTLNNYGPLGTDGATPIINVPEVGMLGIGRIIDRPWVVDGEIVVRKVTEMTVTF
+DHRVTDGATASAFLTFVADCLHDPTAALARI
+>TT9_LFPAFLNI_01711
+MSNTFLLPDLGEGLTEADIVRWLVAEGDTVAVDQPMVEVETAKALVEVPSPYAGTVLTLHGAEGETMDVGSPLITIGAAG
+ES-GEGSAPVAGTEALAVPPSTGADAAEAARPGALSYREEEMAGVQPKPDKARGGDGDVAGSDDEASGAVLIGYGTSGHR
+ATSRSRPSKRGRGATRPT-----PAPTAWA------GAPRVTSPIVRKLAREKGVDVAALTGTGPDGLITRADVLAAAEG
+-SAPQAAPAQAPSVAAVPAAEA--AAQPGAVDGRTGLAVVARTPISGVRKVIADQLSRSRREVPEVTAWLDVDVTALLEL
+RAALKAKDPENAPSLLGLIARFTLAGLRRYPVMNARIEAGADGKDEIVEVDGVHLGLAVQTDRGLMVPSVEHAEKLSADE
+LTAAVNDTVSRARAGRAAPAELTRGTFTLNNYGPLGTDGATPIINVPEVGMLGIGRIIDRPWVVDGEIMVRKVTEMTVTF
+DHRVTDGATASAFLTFVADCLHDPTAALARI
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000723.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000723.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c8a1865da3f93c39c62edb79213a0f1aaba9e86d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000723.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01103
+MSGPRLRSHAPEGYVCPFCGLVAGDVSDPGNRCELADTVYQDEDLLVLIAVDGFGDHEGH
+AMVCPAGHYENLYELPPRVLQRIALMAREVALAMKRAWSPDGVSTRQHNEPAGNQHVWHY
+HLHVFPRFEGDLLYRQLRHPVSPEVRALKARELAAELDPAPTFLD
+>KBS0714_MOLHKGIG_01774
+MTAPAPVSHAPDDYVCPFCGLVASDVSDPGNRCELGDTVYQDEDLLVLIAVDGFGDHEGH
+AMVCPAEHYENLYDLPPRVLQRIALMAQQVALAMKRAWAPDGVSTRQHNEPAGNQHVWHY
+HLHVFPRFEGDMLYRQLRHPVAPEVRAGKARELAAALDPAPTRLD
+>KD337_NAFOICDF_01028
+MSA-QPLSHAPEGYVCPFCGLVAGDVSDPGNRCELEDTVYQDEDVLVLIAVDGFGEHDGH
+AMVCPSGHYENLYDLPPRVLQRIALMAQQVALAMKRAWGPDGVSTRQHNEPAGNQHVWHY
+HLHVFPRYEDDLLYRQLRHPVAPEVRAARARELAAALDPAPTLLD
+>SA211_MHAAABBN_01481
+MTAPAPVSHAPDGYVCPFCGLVAGDVSDPGNRCELGDTVYQDEDLIVLIAVDGFGDHEGH
+AMVCPAEHYENLYDLPPRVLQRIALMAQQVALAMKRAWAPDGVSTRQHNEPAGNQHVWHY
+HLHVFPRFEGDMLYRQLRHPVAPEVRAGKARELAAALDPAPTRLD
+>TT9_LFPAFLNI_01703
+MTAPAPVSHAPDGYVCPFCGLVAGDVSDPGNRCELGDTVYQDEDLLVLIAVDGFGDHEGH
+AMVCPAEHYENLYDLPPRVLQRIALMAQQVALAMKRAWAPEGVSTRQHNEPAGNQHVWHY
+HLHVFPRFEGDMLYRQLRHPVAPEVRALKARELAAALDPVPTRLD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000726.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000726.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bbd0b74b7d2c922cf5b9c21a1b6f8b88de4e0832
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000726.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01107
+MARLLVDLTPLKVSPAYRRLWVGNTLSFVGTQLTLVAVSLEVFALTGSSFAVGLLGLAAL
+VPLVVAGLYGGAVADRHDRRTVALASSAVMWLTTVGIAAHAWAGIESVPLLYALVALHSG
+ASGINQPTRGAIIPALVGMKLVPAANALNMMTFSVAMMAGPVLGGVLVASVGYAWTYSID
+VVTFLAALYAVWRLPSLPPQRAEGEAAPTGRVGVRSVVEGLRFLGSRPNLRMTFLADIVA
+MATAFPRALLPAVGGVVLGGGEAAVGVLLAAMAAGAFLAGLFSGPFTRLHAQGWGVYVSI
+LVWGASVAAFGGVVWWAQGLPDGDPRLTGAFVAAALCLAVGGAADSISGVFRTTILQSAT
+PDHLRGRLQGVFVVVVAGGPRVGELLTGGASVAVGEGLTLLLGGLACVLGVSLLMRRQPE
+FLKYDARSPTP
+>KBS0714_MOLHKGIG_01770
+MARLLVDITPLRVSPAYRRLWLGNTLAYVGTQLTLVAVSLEVFALTGSSFAVGLLGLAAL
+VPLVVAGLYGGAIADRHDRRRVALTSSAVMWLTTVGIAAQAWAGFESVPVLYALVALHSG
+ASGINQPTRGAIIPALVGLPLVPAANALNMMTFSVALMVGPVLGGVLVAAVGYAWTYSID
+VVTFLAALYAVWRLPSLPPQQAEAAAASGTRGGLASVVEGLRFLGSRPNLRMTFLADIVA
+MTTAFPRALLPAIGAVVLGGGEAAVGVLLAAMAAGAFLAGLFSAPFTRLHAQGWGVYVSI
+LVWGGAVAAFGGVVWWAQSLPDGDPRLTLAFALAALCMAVGGAADSLSGVFRGSILQSAT
+PDHLRGRLQGVFVVVVAGGPRLGELITGGASVVLGEGPTLLAGGVLCMLGVSALMRWQPG
+FLRYDARNPTP
+>KD337_NAFOICDF_01033
+MPRLLVDLAPLEASPAYRRLWLGNALAFVGTQLTLVAVSLEVFALTGSSFAVGMLGLAAL
+IPLVVAGLYGGAVADRHDRRTVALASGAVMWAATALIAAHAWAGVESVGVLYGLVALHSA
+ASGINQPTRGAIIPALVGPALLPAANALNMLTFSTAMMAGPLLGGVLVASVGYAWTYTVD
+VVTFLAALWAVWRLPSLPPDRSAAPDDAG-RGGLSSVLDGFRFLGTRRNVRMTFVADIVA
+MATAFPRALLPAVGGTILGGGEAAVGVLLASMAAGTFLAGLFSGTFTRVHRQGRGVAVAI
+AAWGLSVAAFGAVVLWAAPLPDGDPRLGPALAACAACLVVAGAADSVSAVFRTTILQSAT
+PDHLRGRLQGVFVVVVAGGPRVGEMIQGTASAALGEGATLVLGGVLCVAGIALLMRVQPG
+FLHYDARRPTP
+>SA211_MHAAABBN_01477
+MARLLVDITPLRVSPAYRRLWLGNTLAYVGTQLTLVAVSLEVFALTGSSFAVGLLGLAAL
+VPLVVAGLYGGAIADRHDRRRVALTSSAVMWLTTVGIAAQAWAGLESVPVLYALVALHSG
+ASGINQPTRGAIIPALVGLPLVPAANALNMMTFSVALMVGPVLGGVLVAAVGYAWTYSID
+VVTFLAALYAVWRLPSLPPQRAETATASGTRWGLASVVEGLRFLGSRPNLRMTFLADIVA
+MTTAFPRALLPAIGAVVLGGGEAAVGVLLAAMAAGAFLAGLFSAPFTRLHAQGWGVYVSI
+LVWGAAVAAFGGVVWWAQSLPDGDPRLTLAFALAALCMAVGGAADSLSGVFRGSILQSAT
+PDHLRGRLQGVFVVVVAGGPRLGELLTGGASVGLGEGPTLLAGGVLCMLGVTALMRWQPG
+FLRYDARNPTP
+>TT9_LFPAFLNI_01699
+MARLLVDITPLRVSPAYRRLWLGNTLAYVGTQLTLVAVSLEVFALTGSSFAVGLLGLAAL
+VPLVVAGLYGGAIADRHDRRRVALTSSAVMWLTTVGIAAQAWAGLESVPVLYALVALHSG
+ASGINQPTRGAIIPALVGLPLVPAANALNMMTFSVALMVGPVLGGVLVAAVGYAWTYSID
+VVTFLAALYAVWRLPSLPPQRGEAAAASGTRGGLASVVEGLRFLGSRPNLRMTFLADIVA
+MTTAFPRALLPAIGAVVLGGGEAAVGVLLAAMAAGAFLAGLFSAPFTRLHAQGWGVYVSI
+LVWGAAVAAFGGVVWWAQSLPDGDPRLTLAFALAALCMAVGGAADSLSGVFRGSILQSAT
+PDHLRGRLQGVFVVVVAGGPRLGELLTGGASVGLGEGPTLLAGGVLCMLGVSALMRWQPG
+FLRYDARNPTP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000729.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000729.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1e0ee7a8e2f77df176f10bf45777745536582347
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000729.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01112
+MTTAFEPRPHTGLAPREPE---PHGPGTPGPLRPGVRGSVLIVSEHADPDTAMRHAMAWI
+TAFEDDCGLVLDADGTELYAVGLAGELGASLRRSPGVAEDGTPTDTSEFVDAILTGGVWR
+LREPDARA--------WSTAYRAAILGAAPHAVCTVWDVLPLPAA-
+>KBS0714_MOLHKGIG_01765
+MTTAFEPRPHTAAAPREPD---PHGPGTPGSLRPGERGSVLIVTRHPDPDEAMRHAMAWI
+TAFEEDCGLVLDTDETALYAVGRAGDLGEALRRGPLVHEDGSPADTSAFVDAVLADGTWR
+LRDADPRA--------WSTTYRATILGAAPEAVCTIWDVFPLPAA-
+>KD337_NAFOICDF_01037
+MTAQH-------AEPTRTDRAEPHGPGTPATLRPGERGSVLVLSPAGPPEAAMGHAVAWI
+TAFEDDCGLVLDRDATSLYAVSPA----DGLRREGDVPSDGGIAE---HLDFVLAGDVWH
+HRGTCPPAPAGSDVDGWALLVHRLQREAPRGALGTVWDVFPLPAAG
+>SA211_MHAAABBN_01472
+MTTAFEPRPHAAAAPREPD---PHGPGTAGSLRPGARGSVLIVTRHPDPDEAMRHAMAWI
+TAFEEDCGLVLDTDETALYAVGRAGDLGEALRRGPLVHEDGSPADTSAFVDAVLTDGTWR
+LRDADPRA--------WSTTYRATILGAAPEAVCTIWDVFPLPAA-
+>TT9_LFPAFLNI_01694
+MTTAFEPRPHTAAAPREPD---PHGPGTPGSLRPGERGSVLIVTRHPDPDEAMRHAMAWI
+TAFEEDCGLVLDTDETALYAVGRAGDLGEALRRGPLVHEDGSPADTSAFVDAVLTDGTWR
+LRDADPRE--------WSTTYRAAILGAAPEAVCTIWDVFPLPAA-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000730.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000730.fa
new file mode 100644
index 0000000000000000000000000000000000000000..276052773c0b9d90aebbdaa4d245604c8efbbf50
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000730.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01113
+M-----SAPDAVRRVRVPVPVDVPLTLRPLQRGAADPTVRAVPEGVWLTLRVPDQGAPAG
+SPGRPTSLLVSGAREAAGPGTVVTARAWGPGARAAVASVERLLGVDDAGWDAFDALLHRD
+SSAPALPRHVREARRTRAGLRLPAAGALSGQLITVVLEQKVTHDQARHGWRTLVRLAARI
+DDDGPAPGPVPSGMLPPPSPAAVLRIPSWDWHARAWVQPAQSHTVLEVARRAASIDRLGA
+AVAPGDTAGIAALARRLESLPGIGPWTTAEALQRSHGAADLVAVGDYHLAQFVGQVLTGR
+RTDDAGMLRLLEPWAGHRQRVVRMIGISGARKQAFGPKLAPADHRAY
+>KBS0714_MOLHKGIG_01764
+M-----IAPDAERCVRVPVPVDVALTLRPLQRGAADPTVRATPQGVWLTLRSPAPDAASG
+GPGRPTSLLVSGVRETAGGGTAVTARAWGAGARTAVADVERLLGLHDDGWAAFDALLRPD
+SGAPALPRHVREARRTRAGLRLPAAGALSRQLLTAVLEQKITHDQARHGWRTLVRLAARI
+DGDGPAPGPVPPGMLPPPTPAAVLRIPSWDWHARAWVQPSQSRTVLEVARRAASIDRLGD
+AVAPGDTAGVAALARRLESVPGIGPWTTAEALQRSHGAADLVSVGDYHLAQYVGQVLTGR
+RTDDAGMLRLLAPWAGHRQRVVRMIGLSGERKQAFGPKLAPADHRAH
+>KD337_NAFOICDF_01038
+MVPPLSVPPDAVVRLAPGVPVDVAATLRPLQRGAADPTVRAAPTGVWLTRRERV-----D
+GATLPATLLVSPQVRG-----EVTARAWGPGAAAALAGLPALLGLHDTGWDAFDALLAPD
+PRRPSLPHALREARRTREGLRLPAAGHLSTQLMTVVLEQKVTHDQARHGWRTLVRLAHGI
+DDATP-PGPAPAGMLLPPTPRAVLAIPSWDWHARAWVQPAQSRTVLEVARRASAVDRLGA
+AVAPGDVAGTAALAARLQAIPGVGPWSAAEALQRSHGSADLVSVGDFHLAHLVGQVLAGR
+RTDDAGMLRLLQPWEGHRQRVVRMIGASGASKERFGPRLAPADHRAY
+>SA211_MHAAABBN_01471
+M-----TAPDAERRVRVPVPVDVALTLRPLQRGAADPTVRATPQGVWLTLRSPAPDVASG
+GPGRPTSLLVSGVREAAGGGTAVTARAWGAGASAAVAGVERLLGLHDDGWDAFDALLRPD
+SGAPALPPHVREARRMRAGLRLPAAGALSRQLLTAVLEQKVTHDQARHGWRTLVRLAARI
+DDDGPAPGPVPPGMLPPPTPAAVLRIPSWDWHARAWVQPSQSRTMLEVARRAASIDRLGD
+AVTPGDTAGVAALARRLESVPGIGPWTTAEALQRSHGAADLVSVGDYHLAQYVGQVLTGR
+RTDDAGMLRLLAPWAGHRQRVVRMIGLSGERKQGFGPKLAPADHRAH
+>TT9_LFPAFLNI_01693
+M-----TAPDAERRVRVPVPVDVALTLRPLQRGAADPTVRATPQGVWLTLRSPAPDAASG
+GPGRPTSLLVSGVREAAGGGTAVTARAWGAGASAAVAGVERLLGLHDDGWGAFDALLRAD
+SGAPALPRHVREARRTRTGLRLPAAGALSRQLLTVVLEQKVTHDQARHGWRTLVRLAARI
+DDDGPAPGPVPPGMLPPPTPAAVLRIPSWDWHARAWVQPSQSRTMLEVARRAASIDRLGD
+AVAPGDTAGVAALARRLESVPGIGPWTTAEALQRSHGAADLVSVGDYHLAQYVGQVLTGR
+RTDDAGMLRLLAPWAGHRQRVVRMIGLSGERKQAFGPKLAPADHRAH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000734.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000734.fa
new file mode 100644
index 0000000000000000000000000000000000000000..18b869e017ec84f481ef16518042ecd05f757d97
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000734.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01117
+MPQNSED-----------------------------------------------------
+-----------RPLARGLGRAAGRAARSFQESQRADDARLRAERARLAAEDEERLSRRRE
+DRERGLAERDAAESDAGLVHPLLRIARMYWLALTVVLAVVAGAFVWNGMRARESGEPVVD
+PLTGIESVGVLGGATGQFTMGVTVALFAAAALWGWIGLLRRRRSAIGTLTFIALLLAAPA
+FLRANGLLIVLAVIMLVGAALLWLPPVRSRLRR
+>KBS0714_MOLHKGIG_01760
+MPQNSED-----------------------------------------------------
+-----------RPLARGLGRAAGRAAQSFRENQRADDARLRAERARLTAEDEERLERRRA
+DRERDLVARDAAESDAGLVHPLLKVARLYWLAVTVVLIGIAGAFLWNGARAQDSGEPVID
+PLTGMESVGVLGGATGQFTMGTAVALLAAASLWGWIGLLRRRRSAIGTLTFIAVLLAAPA
+FLRANGLLIILAVVMLLGAALVWLPPVRSRVRR
+>KD337_NAFOICDF_01042
+MADNSAENSSDRIARAAGRAARAFREGQDAERIRREQARAEAPRTADADGSRATGLRERA
+VRAAAQAAERAEPLKERVGHAAGEAGRSFKENQAQDAARLRGVREQVRADDDAARAERQA
+ERERALDARD--ETEAGRVHPLLRLTRLWWLAVSLLLLGLATAFVYNGVRADRDGGEVID
+PVTGLQSIGPLGGATGQYTVGGVLAALALVTLWGWVGLLRRRRASLGTLTTVAVLLAIPA
+VLRPNPLFIVLGAAMAIGAVLLWLPPVRSRVRR
+>SA211_MHAAABBN_01467
+MPQNSED-----------------------------------------------------
+-----------RPLARGLGRAAGRAAQSFRENQRADDARLRAERARLTAEDEERLERRRA
+DRERDLVARDAAESDAGLVHPLLKVARLYWLAVTVVLIGIAGAFLWNGARAQDSGEPVID
+PLTGMESVGVLGGATGQFTMGTAVALLAAASLWGWIGLLRRRRSAIGTLTFIAVLLAAPA
+FLRANGLLIILAVVMLLGAALVWLPPVRSRVRR
+>TT9_LFPAFLNI_01689
+MPQNSED-----------------------------------------------------
+-----------RPLARGLGRAAGRATQSFRENQRADDARLRAERARLTAEDEERLERRRA
+DRERDLAARDAAESDAGLVHPLLKVARLYWLAVTVVLVGIAGAFIWNGARAQDSGEPVID
+PLTGMESVGVLGGATGQFTMGTAVALLAAASLWGWIGLLRRRRSAIGTLTFIAVLLAAPA
+FLRANGLLIILAVVMLLGAALVWLPPVRSRVRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000735.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000735.fa
new file mode 100644
index 0000000000000000000000000000000000000000..712835b5b57e907382b68bb11b87de2927f41c6a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000735.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01118
+M-------SDALDPQTTPEAQVDAAELAEARQEAAEAAAPKAETPETAAAATETDSAPEAET-AEEPEAPAEPAGPTFLD
+LGLDARVLAAVEDLGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALARLAETADVNGRADTPQVLVLAPTR
+ELALQVADAFDSYAKHLEDVSVLAVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRM
+GFAEEVDRILASTPDTKQTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKLEAFTRILETED
+HDGVIAFVRTRAGTEELAQKLNRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERISLVVNYDIPQ
+DAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAVPAVKDVNAARKRRFADGITRTLERASEEELA
+VFGEIVAAYVEEHDAEPSRVAAALGMMAQGGRPLLAKEQEIP-TGPRGRKERD----GGRDGGREHGTADGRGSRGPARE
+PAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTPAQLEAAANIEISGRRLGLRKDT
+GRPTRAERDGDERRGGFRKDRGERGGHGGHRGGFRKDRDERGFRGDREERGGFRGDRDDRGDRGGFRKDREDRGGFRKDR
+EDRGDRGGFRKDREDRGGFRKDRDERG--GFRGGKAGGRKPRWGAQERSDRGPRR
+>KBS0714_MOLHKGIG_01759
+M-------SDILDPQTTAEV---APELAEAEQEAT-GTVPQV------------DAAPEAPAEPAAPEAPAEPAGPTFLD
+LGLDARVLAAVEDLGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVTGRADTPQVLVLAPTR
+ELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRM
+GFAEEVDRILASTPDTKQTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEE
+HDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERISHVVNYDIPQ
+DAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAVPSVADVNAARKRRFADGITRTLERASEEELA
+VFGEIVAAYVDEHEAEPARVAAALGMMAQGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSRGPARE
+PAAGNVTYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLEAAANAEINGRRLGLRKDT
+GRPTRAERDGE--------DRGER------RGGFRKDRGERG------ERGGFRGDRDG-GQRGGYRKDRDDRG------
+-----------SREDRGGFRKDRDDRSFRGDRRGRPGGRKPRWGAQERSDRGARR
+>KD337_NAFOICDF_01043
+MTPHETIPADDQAPVDLTEF---DPELAETTAE-----------------------APAAEQDADDAEADAEPAGPTFLS
+LGLDARVLAAVEDLGYQRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETQDVNGRSQAPQILALAPTR
+ELALQVAEAFESYAKHLDDVSVLAVYGGAPYGPQLAGLRRGAQVVVGTPGRVIDHLERGNLDLSQLQTLVLDEADEMLRM
+GFAEEVDRILAETPDSKQTALFSATMPPAIRRISAQYLNDPEEVAVARQSTTGTNIRQRYLQIAHQWKFEAMTRILETED
+HEGVIAFVRTRAGTDELAQRLNQAGFSAVAISGDVAQKQREKTVDDLKAGRVDILVATDVAARGLDVERISLVVNYDIPQ
+DAESYVHRIGRTGRAGRSGDAVLFMTPRERFLLKQIERTTRQEVEEMQVPTVAQVNEARTRGVVAGIGRTLETASEADLD
+TYARMVAEYVEANDVDPARAAAALALMAQGGRPLLTEADEVP-AGGRVRRDRDRDDRRERGDRSERGDRDGRGSRGPRRE
+PAAGNATYWIGVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHALVELPADLTAAQLDAAANTEINGRRLNLRKDT
+GRPTRAERDGD---G----ERGHRGPRED-RGGFRRD---RG------DRGGFRRDRGERPERGGFRKDRDDRG------
+-----------PREDRGGFRHDRDDRG------GRPGARKPRWGSDDRRDRGPRR
+>SA211_MHAAABBN_01466
+M-------SDILDPQTTAEV---APELAEAEQEAT-GTVPQV------------DAAPEAPAEPAAPEAPAEPAGPTFLD
+LGLDARVLAAVEDLGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVTGRADTPQVLVLAPTR
+ELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRM
+GFAEEVDRILASTPDTKQTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEE
+HDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERISHVVNYDIPQ
+DAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAVPSVADVNAARKRRFADGITRTLERASEEELA
+VFGEIVAAYVDEHEAEPARVAAALGMMAQGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSRGPARE
+PAAGNVTYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLEAAANAEINGRRLGLRKDT
+GRPTRAERDGE--------DRGER------RGGFRKDRGERG------ERGGFRGDRDG-GQRGGYRKDRDDRG------
+-----------SREDRGGFRKDRDDRSFRGDRRGRPGGRKPRWGAQERSDRGARR
+>TT9_LFPAFLNI_01688
+M-------SDILDPQTTAEA---APELAEAEQEAT-GTVPQV------------DA-----AEPAAPEAPAGPAGPTFLD
+LGLDARVLAAVEDLGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVTGRADTPQVLALAPTR
+ELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRM
+GFAEEVDRILASTPDTKQTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEE
+HDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERISHVVNYDIPQ
+DAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAVPSVADVNAARKRRFADGITRTLERASEEELA
+VFGEIVAAYVDEHEAEPARVAAALGMMAQGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSRGPARE
+PAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLEAAANAEINGRRLGLRKDT
+GRPTRAERDGE--------D----------RGGFRKDRGERG------ERGGFRGDRDG-GQRGGYRKDRDDRG------
+-----------SREDRGGFRKDRDDRSFRGDRRGRPGGRKPRWGAQERSDRGARR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000740.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000740.fa
new file mode 100644
index 0000000000000000000000000000000000000000..74d7bb9e5ceb2225ca87196b2eecc4624a973758
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000740.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01125
+----------MTSAAPPPSPPPDAAAVPTVGLIGWRGMVGSVLMQRMAEEGDFARIRPVF
+FSTSNAGGPAPTFEGLPGDAGPLQDAYDLNVLASLPVIVTAQGGDYTKDVYPRLRAAGWD
+GIWIDAASTLRMEDTSVIALDPVNRSVIDAALASGVKDFIGGNCTVSCMLMGLGGLFKAG
+LVEWGTAMTYQAASGGGARHMRELLTQYADLGGVVRDELADPASAILEIDRKVLELQRDG
+LDATQFGVPLGGSLIPWIDSDLGNGVSREEQKAFDETNKVLGLRGEDRIAFDSLCVRIGA
+MRSHSQALTLKLTRDVPLDEVEQIIAEDNEWVRLVANTKEASVAELTPIAATGTLQIPVG
+RLRKLNMGPEYLSAFTVGDQLLWGAAEPVRRMLMIATGNL
+>KBS0714_MOLHKGIG_01752
+MRSRAASLEGMTSAAPASVNAPDAAAVPTVGLVGWRGMVGSVLLQRMAEEGDFARVHPVF
+FSTSNAGGPAPVLEGMAGDPGVLQDAYDVDALKALPVILTAQGGDYTQAVYPKLRAAGWD
+GIWIDAASTLRMADTSVIALDPVNRGVIDAALANGTKDFIGGNCTVSCMLMGLGGLFKAG
+LVEWGTAMTYQAASGGGARHMRELLTQYAELGGAVRAELADPASAILEIDRKVIELQRGG
+LDSTQFGVPLGGSLIPWIDSDLGDGVSREERKAYDETNKVLGLTGADRIPFDSLCVRIGA
+MRSHSQALTLKLTQDVPLDEVEQIIAADNEWVQVVPNTKEVTVTDLTPIAATGTLQIPVG
+RLRKLNMGPEYLSAFTVGDQLLWGAAEPVRRMLMIATGNL
+>KD337_NAFOICDF_01050
+----------MTSAAPAPVSPAAPAAVPTVGIVGWRGMVGSVLMQRMAEEGDFARIHPVF
+FSTSNAGRPAPVFEGMDGDAGTLQDAHDVEALKALPIIVTAQGGDYTKAVYPALRAAGWD
+GIWIDAASTLRMEDSSVIVLDPVNRSVIDAALASGTKDFIGGNCTVSCMLMGLGGLFREG
+LVEWGTAMTYQAASGGGARHMRELLTQYAALGGVVAEELADPSSAILEIDRKVLELQRGG
+LDASQFGVPLGGSLIPWIDSDLGNGVSREEQKAYDETNKVLGLTGDDRIPFDSLCVRIGA
+MRSHSQALTLKLTRDVPLDEITEIVADGTEWAQVVPNEKEASLRDLTPIAASGTLQIPVG
+RLRKLNMGPEYLSAFTVGDQLLWGAAEPIRRMLMIATGNL
+>SA211_MHAAABBN_01459
+MRSRAASLEGMTSAAPASVNAPDAAAVPTVGLVGWRGMVGSVLLQRMAEEGDFARVHPVF
+FSTSNAGGPAPVLEGMAGDPGVLQDAYDVDALKALPVILTAQGGDYTQAVYPKLRAAGWD
+GIWIDAASTLRMADTSVIALDPVNRGVIDAALANGTKDFIGGNCTVSCMLMGLGGLFKAG
+LVEWGTAMTYQAASGGGARHMRELLTQYAELGGAVRAELADPASAILEIDRKVIELQRGG
+LDSTQFGVPLGGSLIPWIDSDLGDGVSREERKAYDETNKVLGLTGADRIPFDSLCVRIGA
+MRSHSQALTLKLTQDVPLDEVEQIIAADNEWVQVVPNTKEVTVTDLTPIAATGTLQIPVG
+RLRKLNMGPEYLSAFTVGDQLLWGAAEPVRRMLMIATGNL
+>TT9_LFPAFLNI_01681
+----------MTSAAPASVNAPDAAAVPTVGLVGWRGMVGSVLLQRMAEEGDFARIHPVF
+FSTSNAGGPAPVLEGMAGDPGVLQDAYDVDALKALPVILTAQGGDYTQAVYPKLRAAGWD
+GIWIDAASTLRMADTSVIALDPVNRGVIDAALANGTKDFIGGNCTVSCMLMGLGGLFKAG
+LVEWGTAMTYQAASGGGARHMRELLIQYAELGGAVRAELADPASAILEIDRKVIELQRDG
+LDSTQFGVPLGGSLIPWIDSDLGDGVSREERKAYDETNKVLGLTGADRIPFDSLCVRIGA
+MRSHSQALTLKLTRDVPLDEVEQIIAADNEWVQVVPNTKEATVTDLTPIAATGTLQIPVG
+RLRKLNMGPEYLSAFTVGDQLLWGAAEPVRRMLMIATGNL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000741.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000741.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c8bec3cbe130903e1b03268460410d8db42e3823
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000741.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01126
+MA--PTDPQDRLFTPQAVTFLALVACPVLAFVCAVMGLILVLQGKTIAGLVFLIVLTQVF
+AVGGLIAWNKRKRAQQGR
+>KBS0714_MOLHKGIG_01751
+MA--PTDSDQRLLSPQAVSFLALVALPVLAFVCAVFGLILVLQGKTIAGLVFLLVLTQVF
+AVGGLIAWNRRKRAQQGR
+>KD337_NAFOICDF_01051
+MADLPSDEKAPLLDAQAVTFLTLIAFPVLAFVCAVMGLILVLQGKVVAGVVFLVVLTQVF
+AAGGLITWNRRRRDRSGR
+>SA211_MHAAABBN_01458
+MA--PTDSDQRLLSPQAVSFLALVALPVLAFVCAVFGLILVLQGKTIAGLVFLLVLTQVF
+AVGGLIAWNRRKRAQQGR
+>TT9_LFPAFLNI_01680
+MA--PTDSDQRLLSPQAVSFLALVVLPVLAFVCAVFGLILVLQGKTIAGLVFLLVLTQVF
+AVGGFIAWNKRKRAQQGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000742.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000742.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4f68cf067c545ab210218623e64921c3043f5c9c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000742.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01127
+MRSDPMSRATRPTEPAIAMIWAQTPERVIGRDGTMPWHVPEDLAHFRAHTHGHPVIMGRR
+TWESFPARFRPLPGRTNIVVSRTLTASEEAGAELRAAGAVVVPDFGAALAAAAEADGCDT
+VWVIGGATLYEQALDVASRAEVTVIDADVDGDTHAPVLDPRWRRTAVDPAPDAWLDSASG
+PRHRFERWERD
+>KBS0714_MOLHKGIG_01750
+MRSDPMSRATRPTEPVIAMIWAQTPERVIGRDGTMPWHVPEDLAHFRAHTHGHPVIMGRR
+TWESFPARFRPLPGRTNIVVSRTLTATEEAGAELRAAGAVVVPNFGAALAAAAEADGCDT
+VWVIGGATLYEQALDVASRAEVTVIDADVDGDTHAPPLDARWRRTAVDPAPDAWLDSASG
+PRHRFERWERD
+>KD337_NAFOICDF_01052
+M-ARHHDDGARPRQ-TIAMIWAQTPDGVIGADGTMPWHLPEDLARFKALTLGHPVIMGRR
+TWDSFPARVRPLPGRTNIVVSRTLTATPEAGEAVRAAGAVVVPDFGAALTAADEADGLDL
+VWVIGGATLYEQALDVATRAEITVVDVDAPGDTHAPALDSRWRLVAADPSPDGWLDSAAG
+PRRRDERWERD
+>SA211_MHAAABBN_01457
+MRSDPMSRATRPTEPVIAMIWAQTPERVIGRDGTMPWHVPEDLAHFRAHTHGHPVIMGRR
+TWESFPARFRPLPGRTNIVVSRTLTATEEAGAELRAAGAVVVPNFGAALAAAAEADGCDT
+VWVIGGATLYEQALDVASRAEVTVIDADVDGDTHAPPLDARWRRTAVDPAPDAWLDSASG
+PRHRFERWERD
+>TT9_LFPAFLNI_01679
+MRSDPMSRATRPTEPVIAMIWAQTPERVIGRDGTMPWHVPEDLAHFRAHTHGHPVIMGRR
+TWESFPARFRPLPGRTNIVVSRTLTATEEAGAELRAAGAVVVPDFGAALAAAAEADGCDT
+VWVIGGATLYEQALDVASRAEVTVIDADVDGDTHAPLLDARWRRTAVEPAPDAWLDSASG
+PRHRFERWERD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000743.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000743.fa
new file mode 100644
index 0000000000000000000000000000000000000000..03a0ccfefea010db3a6086b1c6dbbe26a894b5b5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000743.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01128
+---MSIPTPYEDLLADVMANGAVKSDRTGTGTRSVFGRQMRFDLSRSFPLITTKRVHFKS
+VALELLWFLRGDSNVRWLQERGVRIWNEWADEDGELGPVYGVQWRSWPTPDGGHIDQIAK
+VVEQIRTNPDSRRHIVTAWNPAEVDEMALPPCHALFQFYVSPGQDGAPGRLSCQLYQRSA
+DLFLGVPFNIASYALLTVIVAQQTGLAPGEFVWTGGDVHIYANHEEQVREQLSREPYPYP
+RLWLRRTPASIFDYDYEDFEVLDYRHHPTITAPIAV
+>KBS0714_MOLHKGIG_01749
+MGRVSIPTPYEDLLADVMAHGAVKTDRTGTGTRSVFGRQLRFDLAESFPLITTKRVHFKS
+VALELLWFLRGDSNVRWLQERGVRIWNEWADEDGELGPVYGVQWRSWPTPDGGHIDQIAK
+VVEQIRTNPDSRRHIVTAWNPAEVDEMALPPCHALFQFYVSPGQDGAPGRLSCQLYQRSA
+DLFLGVPFNIASYALLTVMVAQQTGLTPGEFVWTGGDVHIYANHEEQVREQLSREPYPYP
+RLRLRRTPASIFDYDYEDFEVLDYRHHPTITAPIAV
+>KD337_NAFOICDF_01053
+---MSIPTPYEDLLADVLAHGAVKADRTGTGTRSVFGRQLRFDLAESFPLITTKRVHFKS
+VALELLWFLRGDSNVRWLQERGVTIWDEWADEGGELGPVYGVQWRSWPTPDGGSIDQIAK
+VVEQIRTSPDSRRHLVTAWNPAEVDEMALPPCHAMFQFYVAPDVDGAPGVLSCQLYQRSA
+DLFLGVPFNIASYALLTLMVAQQTGLTPGEFVWTGGDCHIYANHEEQVREQLSREPYPYP
+TLRIRRTPESIFDYEYDDFELVDYRHHPAIKAPVAV
+>SA211_MHAAABBN_01456
+MGRVSIPTPYEDLLADVMAHGAVKTDRTGTGTRSVFGRQLRFDLAESFPLITTKRVHFKS
+VALELLWFLRGDSNVRWLQERGVRIWNEWADEDGELGPVYGVQWRSWPTPDGGHIDQIAK
+VVEQIRTNPDSRRHIVTAWNPAEVDEMALPPCHALFQFYVSPGQDGAPGRLSCQLYQRSA
+DLFLGVPFNIASYALLTVMVAQQTGLTPGEFVWTGGDVHIYANHEEQVREQLSREPYPYP
+RLRLRRTPASIFDYDYEDFEVLDYRHHPTITAPIAV
+>TT9_LFPAFLNI_01678
+MGRVSIPTPYEDLLADVMAHGAVKTDRTGTGTRSVFGRQLRFDLAESFPLITTKRVHFKS
+VALELLWFLRGDSNVRWLQERGVRIWNEWADEDGELGPVYGVQWRSWPTPDGGHIDQIAK
+VVEQIRTNPDSRRHIVTAWNPAEVDEMALPPCHALFQFYVSPGQDGAPGRLSCQLYQRSA
+DLFLGVPFNIASYALLTVMVAQQTGLTPGEFVWTGGDVHIYANHEEQVREQLSREPYPYP
+RLRLRRTPASIFDYDYEDFEVLDYRHHPTITAPIAV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000752.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000752.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d311afc9fbe0fd8e853e796f1569e7dab792136
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000752.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01137
+MRVGMLTSGGDCPGLNAVIRSAVLHGIKTYDMEMVGIRNGWSGLIEKDVEELPRTRVRGL
+ARNGGTILGTSRTHPYDTEGGGPENMRRNMRELGLDAVIAIGGEGTLAGANRLAADGLPI
+VGVPKTIDNDLRGTDYTFGFDTAVQIATDAMDRLRTTGESHHRCMVAEVMGRHVGWIALH
+SGMAAGAHAILIPEVRTPMEQVAEWVKQVHDRGRSPLVVVAEGFIPEGHDDPLSEAGVED
+SGRPRLGGIGEWVTREIEAMTGVETRNTVLGHIQRGGAPTATDRVLSTRFGMGAVDLAAQ
+KRWGQMVAANGTDIISIPMSAALKGLKEVPVERYEEAKVLFGR
+>KBS0714_MOLHKGIG_01740
+MRVGMLTSGGDCPGLNAVIRSAVLHGIKSYDMEMVGIRNGWSGLIEKDVEDLPRSRVRGL
+ARTGGTILGTSRTHPYNAEGGGPENMLRNLRELDIDAVIAIGGEGTLAGANRLAADGLPI
+VGVPKTIDNDLQGTDYTFGFDTAVQIATDAMDRLRTTGESHHRCMVAEVMGRHVGWIALH
+SGMAAGAHAILIPEVRTPMSQVAEWVQQVHDRGRSPLVVVAEGFIPEGHDDPLAEAGVEA
+SGRPRLGGIGEWVTREIEEMTGIETRSTILGHIQRGGAPTATDRVLSTRFGMGAVDLVAQ
+RRWGQMVAANGTEIISIPMSAALKGLKKVPVSRYDEAKILFGR
+>KD337_NAFOICDF_01066
+MRVGLLTSGGDCPGLNAVIRAAVLHGIKTYDMEMVGIRNGWAGIIEQDVEDLPRTRVRGL
+ARTGGTILGTSRTHPYDADGGGPENMARNLRELGIDAVVAIGGEGTLAGANRLAQDGLPV
+VGVPKTIDNDLQGTDYTFGFDTAVEIATDAMDRLRTTGESHHRCMVAEVMGRHVGWIALH
+SGMAAGAHAILIPEVRTPMSQVAEWVTQVHEKGRSPLVVVAEGFIPEGHDDPLADAGMEA
+SGRPRLGGIGEWVTREIEEMTGIETRNTVLGHIQRGGAPTARDRVLSTRFGMGAIDLAAQ
+HRWGSMVAARGTDIITIPMSAALKGLKEVPRERYDEAKVLFGR
+>SA211_MHAAABBN_01447
+MRVGMLTSGGDCPGLNAVIRSAVLHGIKSYDMEMVGIRNGWSGLIEKDVEDLPRSRVRGL
+ARTGGTILGTSRTHPYDAEGGGPENMLRNLRELDIDAVIAIGGEGTLAGANRLAADGLPI
+VGVPKTIDNDLQGTDYTFGFDTAVQIATDAMDRLRTTGESHHRCMVAEVMGRHVGWIALH
+SGMAAGAHAILIPEVRTPMSQVAEWVQQVHDRGRSPLVVVAEGFVPEGHDDPLAEAGVEA
+SGRPRLGGIGEWVTREIEEMTGIETRSTILGHIQRGGAPTATDRVLSTRFGMGAVDLVAQ
+RRWGQMVAANGTEIISIPMSAALKGLKKVPVSRYDEAKILFGR
+>TT9_LFPAFLNI_01669
+MRVGMLTSGGDCPGLNAVIRSAVLHGIKSYDMEMVGIRNGWSGLIEKDVEDLPRSRVRGL
+ARTGGTILGTSRTHPYNAEGGGPKNMLRNLRELDIDAVIAIGGEGTLAGANRLAADGLPI
+VGVPKTIDNDLQGTDYTFGFDTAVQIATDAMDRLRTTGESHHRCMVAEVMGRHVGWIALH
+SGMAAGAHAILIPEVRTPMSQVAEWVQQVHDRGRSPLVVVAEGFVPEGHDDPLAEAGVEA
+SGRPRLGGIGEWVTREIEEMTGIETRSTILGHIQRGGAPTATDRVLSTRFGMGAVDLVAQ
+RRWGQMVAANGTEIISIPMSAALKGLKKVPVSRYDEAKILFGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000753.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000753.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a69b7544e1d5a84c31ca667cbecd6cb5e0a348cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000753.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01139
+----------------------------------------------------------MR
+RSDSSWVGGVLAGVAERYRVDPLLARGVFVALCVVSAGFGLLAYAVAWALLPDGDGTVHY
+GRLRRGEWQDATVAIAVIGGIGVLNVVLGAGFTLLAPVVGGPGSLLGLAAVAVLVWWLVT
+RWDGSTQSRVGPAPASEPEASGRAAARPAWYLRRDDARAAASRQDAHGFRADWLDPETGT
+WRSPVHSRELRAAARLAEEEQAAPAG-----PSGRGSAV-VAAPRRLSPAVQAVTYAVAA
+LAAAAAVGASLLVGVG-SLTLLAVPAIVAALAVIAPVMLAALLTGRRPGSLAPASGILVG
+AAALQVAV---AVAVL
+>KBS0714_MOLHKGIG_01739
+MTSTHDPFTG-----------PGPHVAPDGAAAGETG--PDGLDALPGWLRRAVLSWGVR
+RSPASWVGGVLGGVAERYRIDPLLARGVFVAVCMVSAGLGLLAYAAAWAVLPDPDGRVQF
+GRLRRGEWQDATVAIGVIGAIGALNLLLGAGFTLIAPAVGGPGSLVGLGALAVLVWWLVT
+RWDGRAQARVAPGRVPDADQPAHAVPRPAWYVGGGPRERAAEVTDPHGFRPEWIDPATGT
+WRDHVHSRERRAATRLAEEAPRAATA-----PTGSGSAA-TAAKPRLGPIAQAATYAGAV
+LAALAALGISLLLGVGPTPTLLAVPMLVAALAVIAPVLLGALLSGRRPGTLGPASGILVG
+ATALQVAV---LVALG
+>KD337_NAFOICDF_01068
+MDTAHDPFPAPRSSPATRPLPPGPASDARSRSAGTDGPAPDGLEVLPVWLRRPVEGWGVR
+RSRSSWVGGVLAGVAERYRIDPLLSRGVFVALCVVSAGIGLLGYALAWAVLPDADGRVHY
+GRLRRGEWSDAPVAIAAIAAIGALNVVLGAGFTLIAPVLGGPGSLIGLTALAVLVWWLVT
+RWDGEGERRMAPAQ-PARDAAARPAAEPSWYLRRH--RPESATVDAHGFRSDWIDPETGS
+WREQPHSREHRAAARLAEAQVRAAGQAAGRRPAGTGRGSHSAVKPLLGRGTRIATCVVAA
+GVALAVSLAMVLGNVSTSATLFPVWPALAALGVMAAVMTAGLLRGRRPGLLAPLSGILVG
+VVALQVCAHLLFTPLP
+>SA211_MHAAABBN_01446
+MTSTHDPFTG-----------PGPHVAPDGAASGETG--PDGLDALPGWLRRAVLSWGVR
+RSPASWVGGVLGGVAERYRIDPLLARGVFVAVCMVSAGLGLLAYAAAWAVLPDADGRVQF
+GRLRRREWQDATVAIGVIGAIGALNLLLGAGFTLIAPAVGGPGSLLGLGALAVLVWWLVT
+RWDGRAQARVAPGRAPDADQPSHAVPRPAWYVGGGPRERAAEVTDPHGFHPEWIDPATGT
+WRDHVHSRERRAAARLAEEAPRAATA-----PTGSGSAA-TAAKPRLGPIAQAATYAGAV
+LAALAALGISLLLGVGPTPTLLAVPMLVAALAVIAPVLLGALLSGRRPGTLGPASGILVG
+ATALQVAV---LVALG
+>TT9_LFPAFLNI_01668
+MTSTHDPFTG-----------PGPHVAPDGAAAGETG--PDGLDALPGWLRRAVLSWGVR
+RSPASWVGGVLGGVAERYRIDPLLARGVFVAVCMISAGLGLLAYAAAWAVLPDADGRVQF
+GRLRRGEWQDATVAIGVIGAIGALNLLLGAGFTLIAPAVGGPGSLVGLGALAVLVWWLVT
+RWDGRAQARVAPGRVPDADQPAHAVPRPAWYVGGGPRERAAEVTDPHGFRPEWIDPATGT
+WRDHVHSRERRAAARLAEEAPRAATA-----PTGSGSAA-TAAKPRLGPIAQAATYAGAV
+LAALAALGISLLLGVGPTPTLLAVPMLVAALAVIAPVLLGALLSGRRPGTLGPASGILVG
+ATALQVAV---LVALG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000757.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000757.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c72695d7cf47fac434e85a5658325086c89d2c6e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000757.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01144
+MTDIAANGGGSTPAPDRQRRGLFARIALFLRQVVDELRKVVTPTSEELLRTTGVVLAFVA
+FMILLVMGLDWVFGTVAGLLFGGGGGL
+>KBS0714_MOLHKGIG_01734
+---MAANGGGPAPTPSRQRRGLFARIALFLRQVVDELRKVVTPTSEELLRTTGVVLAFVA
+FMILLVMGLDWVFGTVAGLLFGAGG-L
+>KD337_NAFOICDF_01073
+---MTANHGSSASGPESRRRGPFGRIALFLRQVLDELRKVVTPTGDELLKMTGVVLAFVA
+VMILLVMGLDWVFGTLAGLLFGAGP-A
+>SA211_MHAAABBN_01441
+---MAANGGGPTPTPSRQRRGLFARIALFLRQVVDELRKVVTPTSEELLRTTGVVLAFVA
+FMILLVMGLDWVFGTVAGLLFGAGG-L
+>TT9_LFPAFLNI_01663
+---MAANGGGPAPTPSRQRRGLFARIALFLRQVVDELRKVVTPTSEELLRTTGVVLAFVA
+FMILLVMGLDWVFGTVAGLLFGAGG-L
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000759.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000759.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c8a9833c40033909dda8c6b24dd739c66d6b65f1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000759.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01146
+MAPKKKVSGLIKLQIQAGAANPAPPIGPALGQHGVNIMEFCKAYNAATESQRGNVVPVEI
+TVYEDRSFTFITKTPPAAELIKKAAGVAKGSATPHTAKVGKLTQAQCEEIAQTKMEDLNA
+NDVKAAAKIIAGTARSMGITVEG
+>KBS0714_MOLHKGIG_01732
+MAPKKKVTGLIKLQIQAGAANPAPPIGPALGQHGVNIMEFCKAYNAATESQRGNVVPVEI
+TVYEDRSFTFVTKTPPAAELIKKAAGVAKGSATPHTAKVGTLTQAQCEEIAQTKMEDLNA
+NDVQAAAKIIAGTARSMGITVEG
+>KD337_NAFOICDF_01075
+MAPKKKVAGLIKLQIQAGAANPAPPIGPALGQHGVNIMEFCKAYNAATEAQRGNVIPVEI
+TVYEDRSFTFITKTPPAVELIKKAAGVQKGSSTPHTAKVGTLTQAQCEEIAQSKMEDLNA
+NDVKAAAKIIAGTARSMGITVEG
+>SA211_MHAAABBN_01439
+MAPKKKVTGLIKLQIQAGAANPAPPIGPALGQHGVNIMEFCKAYNAATESQRGNVVPVEI
+TVYEDRSFTFVTKTPPAAELIKKAAGVAKGSATPHTAKVGTLTQAQCEEIAQTKMEDLNA
+NDVQAAAKIIAGTARSMGITVEG
+>TT9_LFPAFLNI_01661
+MAPKKKVTGLIKLQIQAGAANPAPPIGPALGQHGVNIMEFCKAYNAATESQRGNVVPVEI
+TVYEDRSFTFVTKTPPAAELIKKAAGVAKGSATPHTAKVGTLTQAQCEEIAQTKMEDLNA
+NDVQAAAKIIAGTARSMGITVEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000761.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000761.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6bf58e25fd50e8fbbaa27a999500765b8e72a0ed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000761.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01148
+MATSAKESAVAELTDLFRESNAAVLTEYRGLTVTELKQLRDSIRQDATYAVAKNTLAEIA
+AKEAGVEGLEAHLSGPTAIAFVTGDPVNVAKALRDFAKDHEKLVLKGGYMDGQPLDEAGI
+KKIADLESREVLLAKFAGAMKGSMSKAAALFQAPLSKTVRTVEALRAQQGEAA
+>KBS0714_MOLHKGIG_01730
+MATSAKESAVAELTDLFRESSAAVLTEYRGLTVTELKQLRDSIRQDATYAVAKNTLAEIA
+AKDAGLEGLEAHLSGPTAIAFVTGDPVNVAKALRDFAKDHEKLVLKGGYMDGQPLDEAGI
+KQLADLESREVLLAKFAGAMKGSMSKAAALFQAPLSKTVRTVEALRAAQGEAA
+>KD337_NAFOICDF_01077
+MATSAKESAVAELTDLFRSSSAAVLTEYRGLTVSELKQLRDSIRQDATYSVAKNTLTEIA
+AKEAGVEGLDAHLAGPTAIAFVTGDPVTVAKALRDFAKDHDKLVLKGGYMDGQPLDEAGI
+EKLADLESREVLLAKFAGAMKGSMSKAAALFQAPLSKTARTVEALRAQQDQAA
+>SA211_MHAAABBN_01437
+MATSAKESAVAELTDLFRESSAAVLTEYRGLTVTELKQLRDSIRQDATYAVAKNTLAEIA
+AKDAGLEGLEAHLSGPTAIAFVTGDPVNVAKALRDFAKDHEKLVLKGGYMDGQPLDEAGI
+KKLADLESREVLLAKFAGAMKGSMSKAAALFQAPLSKTVRTVEALRAAQGEAA
+>TT9_LFPAFLNI_01659
+MATSAKESAVAELTDLFRESSAAVLTEYRGLTVTELKQLRDSIRQDATYAVAKNTLAEIA
+AKDAGLEGLEAHLSGPTAIAFVTGDPVNVAKALRDFAKDHEKLVLKGGYMDGQPLDEAGI
+KKLADLESREVLLAKFAGAMKGSMSKAAALFQAPLSKTVRTVEALRAAQGEAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000762.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000762.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6165ce1ce6443fef080ee7bbe207247d1b7a2fd6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000762.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01149
+MAKLTTEELLAAFEELTLIELSEFIKAFEEKFDVTAAAPVAVAAAAGAAGG-DAAAAEEK
+DEFDVVLESAGDKKIGVIKEVRALTSLGLKEAKDLVDGAPKPILEGVNKETAEKAKEQLE
+GAGATVTLK
+>KBS0714_MOLHKGIG_01729
+MAKLTTEELLAAFEELTLIELSEFIKAFEEKFDVTAAAPVAVAAAGGAAGGAEAAAAEEK
+DEFDVVLEAAGDKKIGVIKEVRAITSLGLKEAKDLVDGAPKPILEGVNKETAEKAKEQLE
+GAGATVTLK
+>KD337_NAFOICDF_01078
+MAKLTTEELLAAFEELTLIELSEFIKAFEEKFDVTAAAPVAMAAAGAPAGG-DAAAAEEK
+DEFDVILEAAGDKKIGVIKEVRALTSLGLKEAKDLVDGAPKPILEGVNKETAEKAKEQLE
+GAGATVTLK
+>SA211_MHAAABBN_01436
+MAKLTTEELLAAFEELTLIELSEFIKAFEEKFDVTAAAPVAVAAAGGAAGGAEAAAAEEK
+DEFDVVLEAAGDKKIGVIKEVRALTSLGLKEAKDLVDGAPKPILEGVNKETAEKAKEQLE
+GAGATVTLK
+>TT9_LFPAFLNI_01658
+MAKLTTEELLAAFEELTLIELSEFIKAFEEKFDVTAAAPVAVAAAGGAAGGAEAAAAEEK
+DEFDVVLEAAGDKKIGVIKEVRALTSLGLKEAKDLVDGAPKPILEGVNKETAEKAKEQLE
+GAGATVTLK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000764.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000764.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e3b4f66ac02d67f67111ab317139db5aaebc0a79
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000764.fa
@@ -0,0 +1,90 @@
+>AS2_ACLBLIBL_01151
+MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECACGKYKRVRFKGIICERCGV
+EVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITSVDEEGRHRDLANLQAEYDQETR
+VLADQRDADIAAVAADLEKDLAKLESEGAKAAEKKKARDAADKTMSQIRKRADAELDRKEQVWDRFKNLKVADLEGDEGL
+YRTMRDKYGQYFEGSMGAEAIQRRLQTFDLAAESEMLRETIKTGKGQRKTRALKRLKVVNAFLTTDNSPEGMVLDAVPVI
+PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLK
+SLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
+PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQMAVHLPLSPEAQAEARLLML
+SSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRPDAVGAGNAYATVGEAVMAFDGGDLHLNAPVKIGVDGFVPSTAVPAPE
+GWSEGELAVIETTLGKVLFNELLPADYPWLDTQATKGSLGQLVNDLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS
+DITSDFDKAAIMEGYEEQALRVQQQYEKGLIADDERRSELIDIWNKATDEVAAAMKDGLPELNTINRMVSSGARGNWLQV
+RQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATHGARKGLADTALKTANSGYLTRRLVDVSQDVIVREEDCGTE
+RGLSVTIAVPNADGELVAHEQVENSAFARTLAQDVTGEDGSVLASGGADVGDVLIDQLVGAGVSEIKVRSVLTCESAVGT
+CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQELFEARTPKGVAPISEVAGR
+VTIEDTDASVRLLLTPDDGSEEIAYPVLRRARILVADGEHVAVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQS
+QGVGIHDKHVEVIVRQMLRRITVIESGETDLLPGELTDRARFVAANRSAVAEGRQPASGRDELMGITKASLATDSWLSAA
+SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKTVVEPTEEAKANLFASPAGFADFDYPGLDQQLGES
+DFHAVSLDDYGRGGDFRS
+>KBS0714_MOLHKGIG_01727
+MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECACGKYKRVRFKGIICERCGV
+EVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITSVDEEARHRDLANLQAEYDQETR
+VLADQRDSDIAAVAADLEKDLAKLESEGAKAAEKKKARDAADKTMAQIRKRADADLDRKEQVWDRFKNLKVADLEGDEGL
+YRAMRDKYGQYFEGSMGAEAIQRRLQTFDLEAESEMLRETIKTGKGQRKTRALKRLKVVNAFLTTDNSPEGMVLDAVPVI
+PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLK
+SLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
+PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQMAVHLPLSPEAQAEARLLML
+SSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRPDEVGAGNLYATVGEAIMAFDGGDLHLNAPARIGVEGFVPSADVPAPE
+GWSEGEIALIETTLGKVLFNELLPDDYPWLDKQATKGTLGQLVNDLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS
+DITSDFDKAAIMEGYEEQAQRVQQQYDKGLIADDERRSELIDIWNKATDEVAAAMKDGLPELNTINRMVSSGARGNWLQV
+RQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATHGARKGLADTALKTANSGYLTRRLVDVSQDVIVREDDCGTE
+RGLSVTIAAPNADGELVAHEQVENSAFARTLAQDVTGEDGTVLASAGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGT
+CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQELFEARTPKGVAPISEVAGR
+VTIEDTETSVRLLLTPDDGSEEIAYPVLRRARILVADGEHVPVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQS
+QGVGIHDKHVEVIVRQMLRRITVIESGDTDLLPGELTDRARFVAANRAAVAEGRQPASGRDELMGITKASLATDSWLSAA
+SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKTVVEPTEEAKANLFASPAGFADFDYPGLDQSLGEN
+DFHAVSLDDYGRGGDFRA
+>KD337_NAFOICDF_01080
+MTTENPFGLMRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECACGKYKRVRFKGIICERCGV
+EVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITSVDEEARHRDLPNLQAEHDQETR
+VLEDQRDADIAAVAADLEKDLAKLEAEGAKAAEKKKARDAADKTMAQIRKRADAELDRKAQVWDRFKNLKVADLEGDEGL
+YRAMRDKFGAYFEGSMGAEAIQRRLQTFDLAAESELLRETIKTGKGQRKTRALKRLKVVNAFLTTDNSPEGMVLDAVPVI
+PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLK
+SLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNVKSAKRMVERFR
+PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQMAVHLPLSPEAQAEARLLML
+SSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRAEGKGAGRQFATVGEAVMAFDNGELHLNAPATIGVEGFVPSAAVAAPE
+GWTEGEVALIETTLGKVIFNDLLPADYPWLDTQATKGTLGQLVNDLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS
+DITSDFDKASIMQGYEDQAQRVQAQYDKGLIADDERRSELIDIWNKATDEVAAAMKAGLSELNTINRMVSSGARGNWLQV
+RQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATHGARKGLADTALKTANSGYLTRRLVDVSQDVIVREDDCGTG
+RGLSVTIAEPNHDGELVVREQVENSAFARTLAQAVTAEDGTVLAEAGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGT
+CAKCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQELFEARTPKGVAPISEVAGR
+VTIEDTDASVRLILTPDDGSEEIAYPVLRRARLLVADGEHVAVGTQLVAGAVDPKQVLRVLGPRAAQRFLVQEVQDVYQS
+QGVGIHDKHVEVIVRQMLRRITVIESGETDLLPGELTDRSRFVAANRAAVAEGKQPAAGRDELMGITKASLATDSWLSAA
+SFQETTRVLTQAAMEGKEDPLLGLKENVIIGKLIPAGTGLDRYTQTTVEPTEEAKANLFAAPVGFADFDYPGLDQPLGEA
+EFHAVSLDDYGRGGDFRA
+>SA211_MHAAABBN_01434
+MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECACGKYKRVRFKGIICERCGV
+EVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITSVDEEARHRDLANLQAEYDQETR
+VLADQRDSDIAAVAADLEKDLAKLESEGAKAAEKKKARDAADKTMAQIRKRADADLDRKEQVWDRFKNLKVADLEGDEGL
+YRAMRDKYGQYFEGSMGAEAIQRRLQTFDLEAESEMLRETIKTGKGQRKTRALKRLKVVNAFLTTDNSPEGMVLDAVPVI
+PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLK
+SLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
+PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQMAVHLPLSPEAQAEARLLML
+SSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRPDEVGAGNLYATVGEAIMAFDGGDLHLNAPARIGVEGFVPSADVPAPE
+GWSEGEIALIETTLGKVLFNELLPDDYPWLDKQATKGTLGQLVNDLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS
+DITSDFDKAAIMEGYEEQAQRVQQQYDKGLIADDERRSELIDIWNKATDEVAAAMKDGLPELNTINRMVSSGARGNWLQV
+RQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATHGARKGLADTALKTANSGYLTRRLVDVSQDVIVREDDCGTE
+RGLSVTIAAPNADGELVAHEQVENSAFARTLAQDVTGEDGTVLASAGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGT
+CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQELFEARTPKGVAPISEVAGR
+VTIEDTEASVRLLLTPDDGSEEIAYPVLRRARILVADGEHVPVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQS
+QGVGIHDKHVEVIVRQMLRRITVIESGDTDLLPGELTDRARFVAANRAAVAEGRQPASGRDELMGITKASLATDSWLSAA
+SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKTVVEPTEEAKANLFASPAGFADFDYPGLDQSLGEN
+DFHAVSLDDYDRGGDFRA
+>TT9_LFPAFLNI_01656
+MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECACGKYKRVRFKGIICERCGV
+EVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITSVDEEARHRDLANLQAEYDQETR
+VLADQRDSDIAAVAADLEKDLAKLESEGAKAAEKKKARDAADKTMAQIRKRADADLDRKEQVWDRFKNLKVADLEGDEGL
+YRAMRDKYGQYFEGSMGAEAIQRRLQTFDLEAESEMLRETIKTGKGQRKTRALKRLKVVNAFLTTDNSPEGMVLDAVPVI
+PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLK
+SLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
+PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQMAVHLPLSPEAQAEARLLML
+SSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRPDEVGAGNLYATVGEAIMAFDGGDLHLNAPARIGVEGFVPSADVPAPE
+GWSEGEIALIETTLGKVLFNELLPDDYPWLDKQATKGTLGQLVNDLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS
+DITSDFDKAAIMEGYEEQAQRVQQQYDKGLIADDERRSELIDIWNKATDEVAAAMKDGLPELNTINRMVSSGARGNWLQV
+RQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATHGARKGLADTALKTANSGYLTRRLVDVSQDVIVREDDCGTE
+RGLSVTIAAPNADGELVAHEQVENSAFARTLAQDVTGEDGTVLASAGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGT
+CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQELFEARTPKGVAPISEVAGR
+VTIEDTETSVRLLLTPDDGSEEIAYPVLRRARILVADGEHVPVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQS
+QGVGIHDKHVEVIVRQMLRRITVIESGDTDLLPGELTDRARFVAANRAAVAEGRQPASGRDELMGITKASLATDSWLSAA
+SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKTVVEPTEEAKANLFASPAGFADFDYPGLDQSLGEN
+DFHAVSLDDYGRGGDFRA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000765.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000765.fa
new file mode 100644
index 0000000000000000000000000000000000000000..19ef7777d426c176cf948ba5794c0768c3b0cddf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000765.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01152
+MPTIQQLVRKGRSPKVVKTKAPALQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGG
+IEVTAYIPGEGHNLQEHSIVLVRGGRVRDLPGVRYKIVRGALDTQGVKNRGQARSRYGAK
+KEKK
+>KBS0714_MOLHKGIG_01726
+MPTIQQLVRKGRSPKVVNTKAPALQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGG
+IEVTAYIPGEGHNLQEHSIVLVRGGRVRDLPGVRYKIVRGALDTQGVKNRGQARSRYGAK
+KEKK
+>KD337_NAFOICDF_01082
+MPTIQQLVRKGRSPKVVKTKAPALQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGG
+VEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKNRGQARSRYGAK
+KEKK
+>SA211_MHAAABBN_01433
+MPTIQQLVRKGRSPKVVNTKAPALQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGG
+IEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKNRGQARSRYGAK
+KEKK
+>TT9_LFPAFLNI_01655
+MPTIQQLVRKGRSPKVVNTKAPALQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGG
+IEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKNRGQARSRYGAK
+KEKK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000767.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000767.fa
new file mode 100644
index 0000000000000000000000000000000000000000..af6048f057f3a64b031d4f7d832137642ae89977
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000767.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_01154
+MAQDVLTDLNKVRNIGIMAHIDAGKTTTTERILFYTGVNHKLGETHDGASTTDWMEQEKERGITITSAAVTCFWNDNQIN
+IIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYNVPRICFVNKMDKLGADFYFTVDTIVNRLGAR
+PLVMQLPIGAENDFVGVVDLLSMKAFVWPGDAKGDVTMGAEYETREIPAELQEKAEEYRAQLVEAVADTSEELMEKYLEG
+EELTTEEIQAGVRHLTVNAEAYPVFCGSAFKNRGVQPMLDAVVAYLPNPLDAGAVKGHDVKDEEVELEREASKDAPFSAL
+AFKIASHPFFGTLTFIRVYSGRLESGAQILNATKGKKERIGKLFQMHANKENPVDEVVAGHIYAVIGLKDTTTGDTLCDA
+AHPIILESMTFPEPVISVAIEPKTKGDQEKLSTAIQKLVAEDPTFRVNLNEETGQTEIGGMGELHLDVFVDRMKREFKVE
+ANVGKPQVAYRETIKRKVDKVDYTHKKQTGGSGQFAKVQLSFEPLDTADGEIYEFENAVTGGRVPREYIPSVDAGIQDAM
+QFGVLAGYPMVGVKATLLDGAYHDVDSSEMAFKIAGSQAFKEGVRKANPIILEPLMAVEVRTPEEFMGDVIGDLNSRRGQ
+IQSMEDATGVKVVKALVPLSEMFGYIGDLRSKTQGRAVYSMTFHSYAEVPKAVADEIIQKSQGE
+>KBS0714_MOLHKGIG_01724
+MAQDVLTDLHKVRNIGIMAHIDAGKTTTTERILFYTGVNHKLGETHDGGATTDWMEQEKERGITITSAAVTCFWNDHQIN
+IIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYNVPRICFVNKMDKLGADFYFTVDTIVKRLGAR
+PLVMQLPIGAENDFVGVVDLLSMKAFVWPGDAKGDVTMGASYETREIPAELQEKAEEYRNELVEAVAETSEELMEKYLEG
+EELTVEEIQAGVRQLTVNAEAYPVFCGSAFKNRGVQPMLDAVVAYLPNPLDAGSVKGHAVNDEEEVLEREASKEAPFSAL
+AFKIATHPFFGTLTFIRVYSGRLESGAQILNATKGKKERIGKLFQMHANKENPVDEVVAGHIYAVIGLKDTTTGDTLCDP
+ANPIILESMTFPEPVISVAIEPKTKGDQEKLSTAIQKLVAEDPTFRVNLNEETGQTEIGGMGELHLDVFVDRMKREFKVE
+ANVGKPQVAYRETIKRKVDKVDYTHKKQTGGSGQFAKVQLSFEPLDTAEGEVYEFENAVTGGRVPREYIPSVDAGIQDAM
+QFGVLAGYPMVGVKATLLDGAYHDVDSSEMAFKIAGSQAFKEGVRKANPIILEPLMAVEVRTPEEFMGDVIGDLNSRRGQ
+IQSMEDATGVKVVNALVPLSEMFGYIGDLRSKTQGRAVYSMTFHSYAEVPKAVADEIIQKSQGE
+>KD337_NAFOICDF_01084
+MAQDVLTDLNKVRNIGIMAHIDAGKTTTTERILFYTGVNHKLGETHDGASTTDWMEQEKERGITITSAAVTCFWKNNQIN
+IIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYNVPRICFVNKMDKLGADFYFTVDTIVKRLGAK
+PLVMQLPIGSESDFIGVVDLLTMKAFVWPGDAKGDVTMGAEYETQEIPADLQEKAEEYRTQLLEAVADTSEELMEKYLEG
+EEISEEEIVAGVRQLTVNAEAYPVFCGSAFKNRGVQPMLDAVVAYLPNPLDAGAVKGHAVGDEEQVLEREPSKEAPFSAL
+AFKIASHPFFGTLTFIRVYSGRLEGGAQILNATKGKKERIGKLFQMHANKENPVDEVVAGHIYAVIGLKDTTTGDTLCDP
+QNPIILESMTFPEPVISVAIEPKTKGDQEKLSTAIQKLVAEDPTFRVNLNDETGQTEIGGMGELHLDVFVDRMRREFKVE
+ANVGKPQVAYRETIKRKVDKVDYTHKKQTGGSGQFAKVQLSFEPLDTAEGEVYEFENAVTGGRVPREYIPSVDAGIQDAM
+QFGVLAGYPMVGVKATLLDGAYHDVDSSEMAFKIAGSQAFKEGVRKANPVLLEPLMAVEVRTPEEFMGDVVGDLNSRRGQ
+IQSMEDATGVKVVNALVPLSEMFGYIGDLRSRTQGRAVYSMTFHSYSEVPKNVADEIIQKSQGE
+>SA211_MHAAABBN_01431
+MAQDVLTDLHKVRNIGIMAHIDAGKTTTTERILFYTGVNHKLGETHDGGATTDWMEQEKERGITITSAAVTCFWNDHQIN
+IIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYNVPRICFVNKMDKLGADFYFTVDTIVKRLGAR
+PLVMQLPIGAENDFVGVVDLLSMKAFVWPGDAKGDVTMGASYETREIPAELQEKAEEYRNELVEAVAETSEELMEKYLEG
+EELTVEEIQAGVRQLTVNAEAYPVFCGSAFKNRGVQPMLDAVVAYLPNPLDAGSVKGHAVNDEEEVLEREASKEAPFSAL
+AFKIATHPFFGTLTFIRVYSGRLESGAQILNATKGKKERIGKLFQMHANKENPVDEVVAGHIYAVIGLKDTTTGDTLCDP
+ANPIILESITFPEPVISVAIEPKTKGDQEKLSTAIQKLVAEDPTFRVNLNEETGQTEIGGMGELHLDVFVDRMKREFKVE
+ANVGKPQVAYRETIKRKVDKVDYTHKKQTGGSGQFAKVQLSFEPLDTAEGEVYEFENAVTGGRVPREYIPSVDAGIQDAM
+QFGVLAGYPMVGVKATLLDGAYHDVDSSEMAFKIAGSQAFKEGVRKANPIILEPLMAVEVRTPEEFMGDVIGDLNSRRGQ
+IQSMEDATGVKVVNALVPLSEMFGYIGDLRSKTQGRAVYSMTFHSYAEVPKAVADEIIQKSQGE
+>TT9_LFPAFLNI_01653
+MAQDVLTDLHKVRNIGIMAHIDAGKTTTTERILFYTGVNHKLGETHDGGATTDWMEQEKERGITITSAAVTCFWNDHQIN
+IIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYNVPRICFVNKMDKLGADFYFTVDTIVKRLGAR
+PLVMQLPIGAENDFVGVVDLLSMKAFVWPGDAKGDVTMGASYETREIPAELQEKAEEYRNELVEAVAETSEELMEKYLEG
+EELTVEEIQAGVRQLTVNAEAYPVFCGSAFKNRGVQPMLDAVVAYLPNPLDAGSVKGHAVNDEEEVLEREASKEAPFSAL
+AFKIATHPFFGTLTFIRVYSGRLESGAQILNATKGKKERIGKLFQMHANKENPVDEVVAGHIYAVIGLKDTTTGDTLCDP
+ANPIILESMTFPEPVISVAIEPKTKGDQEKLSTAIQKLVAEDPTFRVNLNEETGQTEIGGMGELHLDVFVDRMKREFKVE
+ANVGKPQVAYRETIKRKVDKVDYTHKKQTGGSGQFAKVQLSFEPLDTAEGEVYEFENAVTGGRVPREYIPSVDAGIQDAM
+QFGVLAGYPMVGVKATLLDGAYHDVDSSEMAFKIAGSQAFKEGVRKANPIILEPLMAVEVRTPEEFMGDVIGDLNSRRGQ
+IQSMEDATGVKVVNALVPLSEMFGYIGDLRSKTQGRAVYSMTFHSYAEVPKAVADEIIQKSQGE
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000769.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000769.fa
new file mode 100644
index 0000000000000000000000000000000000000000..acfe659a5724c1981e4c47b503665fac642699b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000769.fa
@@ -0,0 +1,11 @@
+>AS2_ACLBLIBL_01156
+--------------MPELLITLLVLAAAVVAVVWALRTFRPEIDRARRIRRANRNGELRR
+>KBS0714_MOLHKGIG_01722
+MSDDGAAAAARLGSMPELILLIAVLAVVVVAVRWALRTFRPEIDRARRIRRANRGGELER
+>KD337_NAFOICDF_01086
+M---------------EWLIALVVIAAVVAGGLWARRAFAPEIERARRIRRAERGGRLER
+>SA211_MHAAABBN_01429
+MSDDGAAAAARLGSMPELLILIVVLAVAVVAVRWALRTFRPEIDRARRIRRANRGGELER
+>TT9_LFPAFLNI_01651
+MSDDGAAAAARLGSMPELILLIAVLAVVVVAVRWALRTFRPEIDRARRIRRANRGGELER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000771.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000771.fa
new file mode 100644
index 0000000000000000000000000000000000000000..234c269970252cbdee8d63544c5e15cf1a5502ce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000771.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01158
+MAGQKIRIRLKSYDHEVIDVSARKIVDTVTRAGATVVGPVPLPTEKNVYCVIRSPHKYKD
+SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
+>KBS0714_MOLHKGIG_01720
+MAGQKIRIRLKSYDHEVIDVSARKIVDTVTRAGATVVGPVPLPTEKNVYCVIRSPHKYKD
+SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
+>KD337_NAFOICDF_01088
+MAGQKIRIRLKSYDHEVIDVSARKIVDTVTRAGATVVGPVPLPTEKNVYCVIRSPHKYKD
+SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
+>SA211_MHAAABBN_01427
+MAGQKIRIRLKSYDHEVIDVSARKIVDTVTRAGATVVGPVPLPTEKNVYCVIRSPHKYKD
+SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
+>TT9_LFPAFLNI_01649
+MAGQKIRIRLKSYDHEVIDVSARKIVDTVTRAGATVVGPVPLPTEKNVYCVIRSPHKYKD
+SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000775.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000775.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2272dc0b2f7490f0b561c6f9c05baa08277c5139
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000775.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01162
+MAIRKYKPTTPGLRGSSVADFAEITRSTPEKSLLRPLHKTGGRNNTGRITTRHKGGGHKR
+QYRLVDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGAKRYILAPAKLKQGDVVEAG
+PNADIKPGNNLPMRNIPVGTTIHAVELRPGGGAKMARSAGASVQLVAREGKYAQLRLPSG
+EIRNVDVRCRATIGEVGNAEQSNINWGKAGRMRWKGVRPTVRGVVMNPVDHPHGGGEGKT
+SGGRHPVNRNGKPEGRTRRPNKESDKLIVRRRRTGKNKR
+>KBS0714_MOLHKGIG_01716
+MAIRKYKPTTPGLRGSSVADFAEITRSTPEKSLLRPLHKTGGRNNTGRITTRHKGGGHKR
+QYRLVDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGAKRYILAPAKLKQGDVVEAG
+PNADIKPGNNLPMRNIPVGTTIHAVELRPGGGAKMARSAGASVQLVAREGKYAQLRLPSG
+EIRNVDVRCRATIGEVGNAEQSNINWGKAGRMRWKGVRPTVRGVVMNPVDHPHGGGEGKT
+SGGRHPVNRNGKPEGRTRRPNKESDKLIVRRRRTGKNKR
+>KD337_NAFOICDF_01092
+MAIRKYKPTTPGLRGSSVADFAEITRSTPEKSLLRPLHKTGGRNNTGRITTRHKGGGHKR
+QYRLIDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGAKRYILAPAKLQQGDVVEAG
+PNADIKPGNNLPLRNIPVGTTIHAVELRPGGGAKMARSAGASIQLVAREGKYAQLRLPSG
+EIRNVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGVRPTVRGVVMNPVDHPHGGGEGKT
+SGGRHPVNPNGKPEGRTRRPNKESDKLIVRRRRTGKNKR
+>SA211_MHAAABBN_01423
+MAIRKYKPTTPGLRGSSVADFAEITRSTPEKSLLRPLHKTGGRNNTGRITTRHKGGGHKR
+QYRLVDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGAKRYILAPAKLKQGDVVEAG
+PNADIKPGNNLPMRNIPVGTTIHAVELRPGGGAKMARSAGASVQLVAREGKYAQLRLPSG
+EIRNVDVRCRATIGEVGNAEQSNINWGKAGRMRWKGVRPTVRGVVMNPVDHPHGGGEGKT
+SGGRHPVNRNGKPEGRTRRPNKESDKLIVRRRRTGKNKR
+>TT9_LFPAFLNI_01645
+MAIRKYKPTTPGLRGSSVADFAEITRSTPEKSLLRPLHKTGGRNNTGRITTRHKGGGHKR
+QYRLVDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGAKRYILAPAKLKQGDVVEAG
+PNADIKPGNNLPMRNIPVGTTIHAVELRPGGGAKMARSAGASVQLVAREGKYAQLRLPSG
+EIRNVDVRCRATIGEVGNAEQSNINWGKAGRMRWKGVRPTVRGVVMNPVDHPHGGGEGKT
+SGGRHPVNRNGKPEGRTRRPNKESDKLIVRRRRTGKNKR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000777.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000777.fa
new file mode 100644
index 0000000000000000000000000000000000000000..546b8e627f6ee0a4d3c30ce86c95b0b6428254d4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000777.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01164
+MEAKAIARHLRVTPMKARRVVDLVRGKQATEALAILKFAQQGASEPVYKLVASAVANARV
+KADREGQAFDEDALYITEAFVDEGPTMKRFQPRAQGRAYRINKRTSHVTVVVASKDEKGG
+N
+>KBS0714_MOLHKGIG_01714
+MEAKAIARHLRVTPMKARRVVDLVRGKQATEALAILKFAQQGASEPVYKLVASAVANARV
+KADREGQAFDEDALYITEAFVDEGPTMKRFQPRAQGRAYRINKRTSHVTVVVASKDEKGG
+N
+>KD337_NAFOICDF_01094
+MEAKAIARHLRVTPMKARRVVDLVRGKQATEALAILKFAQQGASEPVYKLVASAVANARV
+KADREGVAFNEDALYITEAFVDEGPTMKRFQPRAQGRAYRINKRTSHVTVVVASQDEKGG
+N
+>SA211_MHAAABBN_01421
+MEAKAIARHLRVTPMKARRVVDLVRGKQATEALAILKFAQQGASEPVYKLVASAVANARV
+KADREGQAFDEDALYITEAFVDEGPTMKRFQPRAQGRAYRINKRTSHVTVVVASKDEKGG
+N
+>TT9_LFPAFLNI_01643
+MEAKAIARHLRVTPMKARRVVDLVRGKQATEALAILKFAQQGASEPVYKLVASAVANARV
+KADREGQAFDEDALYITEAFVDEGPTMKRFQPRAQGRAYRINKRTSHVTVVVASKDEKGG
+N
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000779.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000779.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f3b339487d205881fafe7274ec105a42c8bc8ae0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000779.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01166
+MLIPRRVKHRKQHHPKRSGAAKGGTTVTFGEWGIQALTPAYVTNRQIEAARIAMTRYIKR
+GGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVSEEVAREALRL
+AIHKLPLKARVIRREGGE
+>KBS0714_MOLHKGIG_01712
+MLIPRRVKHRKQHHPKRSGAAKGGTTVTFGEWGIQALTPAYVTNRQIEAARIAMTRYIKR
+GGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVTEDVAREALRL
+AIHKLPLKARIIRREGGE
+>KD337_NAFOICDF_01096
+MLIPRRVKHRKQHHPKRSGMAKGGTTVTFGEWGIQALSPAYVTNRQIEAARIAMTRYIKR
+GGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVSEEVAREALRL
+AIHKLPLKARIIRREGGE
+>SA211_MHAAABBN_01419
+MLIPRRVKHRKQHHPKRSGAAKGGTTVTFGEWGIQALTPAYVTNRQIEAARIAMTRYIKR
+GGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVTEDVAREALRL
+AIHKLPLKARIIRREGGE
+>TT9_LFPAFLNI_01641
+MLIPRRVKHRKQHHPKRSGAAKGGTTVTFGEWGIQALTPAYVTNRQIEAARIAMTRYIKR
+GGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVTEDVAREALRL
+AIHKLPLKARIIRREGGE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000781.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000781.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8b087de899f6e9bfc2a2ed0e5b8958a98099e73d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000781.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01168
+MTEQTPAVSEERGYRKALRGVVVSDKMDKTIVVEVEDRKKHSLYGKVMKTSKRVKAHDED
+NTAGIGDRVRIAETRPLSASKRWRLVEIVERAK
+>KBS0714_MOLHKGIG_01710
+MTEQTPAVSEERGYRKALRGIVVSDKMDKTIVVEVEDRKKHSLYGKVLKTSKRVKAHDED
+NTAGVGDRVRLAETRPLSASKRWRLVEIVERAK
+>KD337_NAFOICDF_01098
+MTEQTAAPVEERNYRKSLRGVVVSDKMDKTIVVEVEDRKKHALYGKVMKTSKRVKAHDED
+NTAGVGDRVLIVETRPLSADKHFRLVEIVERAK
+>SA211_MHAAABBN_01417
+MTEQTPAVSEERGYRKALRGIVVSDKMDKTIVVEVEDRKKHSLYGKVLKTSKRVKAHDED
+NTAGVGDRVRLAETRPLSASKRWRLVEIVERAK
+>TT9_LFPAFLNI_01639
+MTEQTPAVSEERGYRKALRGIVVSDKMDKTIVVEVEDRKKHSLYGKVLKTSKRVKAHDED
+NTAGVGDRVRLAETRPLSASKRWRLVEIVERAK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000784.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000784.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ea847c973ec2b3a747899506b15fe3506370f98d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000784.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01171
+MTEVQQTEKVAPRLKTKYREEIRATLQEQFQYGNVMQVPGLVKVVVNMGVGEAAKDSKII
+DGAVTDLTAITGQKPMITKARKSIAQFKLREGMPIGTHATLRGDRMWEFLDRLVTLALPR
+IRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVTTAKNDDEGRALL
+KALGFPFKTDQ
+>KBS0714_MOLHKGIG_01707
+MTEVQQTEKVTPRLKTKYRDEIRGALQEQFQYGNVMQVPGLVKVVVNMGVGEAAKDSKII
+DGAVADLTAITGQKPMITKARKSIAQFKLREGMPIGTHATLRGDRMWEFLDRLVTLALPR
+IRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVTTAKNDDEGRALL
+KALGFPFKTDQ
+>KD337_NAFOICDF_01101
+MTEVQQTEKVTPRLKTKYREEIRASLQEQFEYANVMQVPGLVKVVVNMGVGEAAKDSKII
+DGAIADLTAITGQKPMVTKARKSIAQFKLREGMPIGTHATLRGDRMWEFLDRLVTLALPR
+IRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVTTAKNDDEGRALL
+KALGFPFKTDK
+>SA211_MHAAABBN_01414
+MTEVQQTEKVTPRLKTKYRDEIRGALQEQFQYGNVMQVPGLVKVVVNMGVGEAAKDSKII
+DGAVADLTAITGQKPMITKARKSIAQFKLREGMPIGTHATLRGDRMWEFLDRLVTLALPR
+IRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVTTAKNDDEGRALL
+KALGFPFKTDQ
+>TT9_LFPAFLNI_01636
+MTEVQQTEKVTPRLKTKYRDEIRGALQEQFQYGNVMQVPGLVKVVVNMGVGEAAKDSKII
+DGAVADLTAITGQKPMITKARKSIAQFKLREGMPIGTHATLRGDRMWEFLDRLVTLALPR
+IRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVTTAKNDDEGRALL
+KALGFPFKTDQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000785.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000785.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b77571067a7de0edef31a6f2d62eefcb6d5c4db2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000785.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01172
+MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKTRVAEILKSEGYIQDWREEEAEVGKKL
+TIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTNQQAAK
+KGVGGEVLAYVW
+>KBS0714_MOLHKGIG_01706
+MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKTRVAEILKAEGYIQDWREEEAEVGKKL
+TIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTNQQAAK
+KGVGGEVLAYVW
+>KD337_NAFOICDF_01102
+MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKVRVAEILKAEGYIQDWREEEAEVGKKL
+TIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTDRQASQ
+KGVGGEVLAYVW
+>SA211_MHAAABBN_01413
+MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKTRVAEILKAEGYIQDWREEEAEVGKKL
+TIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTNQQAAK
+KGVGGEVLAYVW
+>TT9_LFPAFLNI_01635
+MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKTRVAEILKAEGYIQDWREEEAEVGKKL
+TIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTNQQAAK
+KGVGGEVLAYVW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000786.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000786.fa
new file mode 100644
index 0000000000000000000000000000000000000000..00f6ca0cc6fbf8607571b30f4fb5caa4bef642d1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000786.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01173
+MSRIGRLPITIPSGVDVTIDGDRVSVKGPKGQLEHSLPTPITATLEEGQVTVARPDDERE
+SRSLHGLTRTLISNMVEGVTTGFSKQLEVVGTGYRVQAKGQDLEFALGYSHPVPVKAPQG
+ITFTVEGNKVTVAGIDKQQVGETAANIRKLRRPDPYKGKGVRYAGEQIRRKAGKAGK
+>KBS0714_MOLHKGIG_01705
+MSRIGRLPITIPAGVDVTIDGDRVSVKGPKGQLEHSLPTPITATLEEGQVTVARPDDERE
+SRSLHGLTRTLISNMVEGVTNGFSKQLEVVGTGYRVQAKGQDLEFALGYSHPVPVKAPQG
+ITFTVEGNKVTVAGIDKQQVGETAANIRKLRRPDPYKGKGVRYAGEQIRRKAGKAGK
+>KD337_NAFOICDF_01103
+MSRIGRLPITVPSGVDVTIDGARISVKGPKGQLEHTLPSPITATLEEGQVIVARPDDERE
+SRSLHGLSRTLINNMVLGVTEGFTKALEVVGTGYRVQAKGQDLEFALGYSHPVPVKCPEG
+ISFTVEGNKVTVAGIDKQKVGETAANIRKLRKPDPYKGKGVRYAGEQIRRKAGKAGK
+>SA211_MHAAABBN_01412
+MSRIGRLPITIPAGVDVTIDGDRVSVKGPKGQLEHSLPTPITVTLEEGQVTVARPDDERE
+SRSLHGLTRTLISNMVEGVTNGFSKQLEVVGTGYRVQAKGQDLEFALGYSHPVPVKAPQG
+ITFTVEGNKVTVAGIDKQQVGETAANIRKLRRPDPYKGKGVRYAGEQIRRKAGKAGK
+>TT9_LFPAFLNI_01634
+MSRIGRLPITIPAGVDVTIDGDRVSVKGPKGQLEHSLPTPITVTLEEGQVTVARPDDERE
+SRSLHGLTRTLISNMVEGVTNGFSKQLEVVGTGYRVQAKGQDLEFALGYSHPVPVKAPQG
+ITFTVEGNKVTVAGIDKQQVGETAANIRKLRRPDPYKGKGVRYAGEQIRRKAGKAGK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000791.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000791.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8d542bf05d343227fa3e192f9a27e554c8574ab5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000791.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01178
+MFKAIARIVRTPDLLRKIAFTLGIIAVYRMGAFVPSPGVDYPAVQQCLAAGNAQGGLYSF
+VNMFSGGALLQVSIFALGIMPYITASIIVQLLRVVIPRFEQLHQEGPQGQSTLTQYTRYL
+TLALSLLQATTMASLARTGALLGCQLPLLRNDSILTVLLVVVVLTAGCIIVMWLGERVTE
+NGVGNGMSLLIFASIAAGFPAGLGQVVQTQGWRVFAIVMLIGLLTMLAIVFVEESQRRIP
+VQYAKRQIGSRTVGGSSTFIPIKVNMANVIPVIFASSVLMLPGILIQFNTPQDGTAPAPW
+IAWLSRYFGNGDHPVYMAVYFLMIIGFTYFYVSITFNPQEISDNMKRYGGFIPGVRAGRP
+TERYLQYVISRITLAGALYLGIVAMIPLIAFVVIGASQNFPFGGTSILIMVGVGLQTVKQ
+VNAQMEQRHYEGLLR
+>KBS0714_MOLHKGIG_01700
+MLKAIARIVRTPDLLRKIAFTLALIAVYRMGAFVPAPGVDYPAVQQCLAAGNAQGGLYSF
+VNMFSGGALLQVSVFALGIMPYITASIIVQLLRVVIPRFEQLHQEGPQGQATLTQYTRYL
+TLALALLQATTMASLARTGALLGCSLPLLRDGSILTVLLVVIALTTGCLIVMWFGERITE
+NGVGNGMSLLIFTSIAAGFPAGLGQVVQTQGWRVFAIVMGIGLLTMLAIVFVEESQRRIP
+VQYAKRQIGSRTVGGSSTYIPVKVNMANVIPVIFASSVLMLPSILIQFNTPQDGSAPAPW
+ITWLSRYFGPGDHPVYMALYFLLIIGFTYFYVSITFNPVEISDNMKRYGGFIPGVRAGRP
+TERYLQYVISRITLVGALYLGIVAMIPLIAFAVIGTSQNFPLGGTSILIMVGVGLQTVKQ
+VSAQMEQRHYEGLLR
+>KD337_NAFOICDF_01108
+MFKAIARIVRTQDLRRKILFTLALVAVYRLGAFIPAPGVDYAAVRQCLAAGSAQGGLYSF
+VNMFSGGALLQVSIFALGIMPYITASIIVQLLRVVIPRFEQLHQEGPQGQATLTQYTRYL
+TIALAVLQGTTMASLARTGALLGCRVPLLHDQSIATVLLVVVVLTTGCVIVMWLGERITE
+NGIGNGMSLLIFASIAAGFPAGIGQVLQTQGWRTFAIVMVVGLLTMLAVVFVEESQRRIP
+VQYAKRQIGTRTVGGTSTFIPIKVNMANVIPVIFASSVLMLPGILAQFNTPQDGSAPPAW
+VSFLSTYFVGGDHPLYMALYLLMIIGFTYFYVSITFNPQEISDNMKRYGGFIPGVRAGRP
+TERYLQYVISRITLPGALYLGIVAMIPLIAFVLIGANQNFPFGGTSILIMVGVGLQTVKQ
+ISAQMEQRHYEGLLR
+>SA211_MHAAABBN_01407
+MLKAIARIVRTPDLLRKIAFTLALIAVYRMGAFVPAPGVDYPAVQQCLAAGNAQGGLYSF
+VNMFSGGALLQVSVFALGIMPYITASIIVQLLRVVIPRFEQLHQEGPQGQATLTQYTRYL
+TLALALLQATTMASLARTGALLGCSLPLLRDGSILTVLLVVIALTTGCLIVMWFGERITE
+NGVGNGMSLLIFTSIAAGFPAGLGQVVQTQGWRVFAIVMGIGLLTMLAIVFVEESQRRIP
+VQYAKRQIGSRTVGGSSTYIPVKVNMANVIPVIFASSVLMLPSILIQFNTPQDGSAPAPW
+ITWLSRYFGPGDHPVYMALYFLLIIGFTYFYVSITFNPVEISDNMKRYGGFIPGVRAGRP
+TERYLQYVISRITLVGALYLGIVAMIPLIAFAVIGTSQNFPLGGTSILIMVGVGLQTVKQ
+VSAQMEQRHYEGLLR
+>TT9_LFPAFLNI_01629
+MLKAIARIVRTPDLLRKIAFTLGLIAVYRMGAFVPAPGVDYPAVQQCLAAGNAQGGLYSF
+VNMFSGGALLQVSVFALGIMPYITASIIVQLLRVVIPRFEQLHQEGPQGQATLTQYTRYL
+TLALALLQATTMASLARTGALLGCSLPLLRDGSILTVLLVVIALTTGCLIVMWFGERITE
+NGVGNGMSLLIFTSIAAGFPAGLGQVVQTQGWRVFAIVMGIGLLTMLAIVFVEESQRRIP
+VQYAKRQIGSRTVGGSSTYIPVKVNMANVIPVIFASSVLMLPGILIQFNTPQDGSAPAPW
+ITWLSRYFGSGDHPVYMALYFLLIIGFTYFYVSITFNPVEISDNMKRYGGFIPGVRAGRP
+TERYLQYVISRITFVGALYLGIVAMIPLIAFAVIGTSQNFPLGGTSILIMVGVGLQTVKQ
+VSAQMEQRHYEGLLR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000794.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000794.fa
new file mode 100644
index 0000000000000000000000000000000000000000..31042e2c742068bdede3dcdcfa8468ed58bad9ac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000794.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01181
+MTIVEDMAKKEGVIEVEGTVSEALPNAMFRVRLQNEHVVLATISGKMRQHYIRILPEDRV
+VVELSPYDLNRGRIVYRYK
+>KBS0714_MOLHKGIG_01697
+MTIVEDMAKKEGVIEVEGTVSEALPNAMFRVRLQNEHVVLATISGKMRQHYIRILPEDRV
+VVELSPYDLNRGRIVYRYK
+>KD337_NAFOICDF_01111
+------MAKKEGVIEVEGTVTEALPNAMFRVRLQNEHVVLATISGKMRQHYIRILPEDRV
+VVELSPYDLNRGRIVYRYK
+>SA211_MHAAABBN_01404
+MTIVEDMAKKEGVIEVEGTVSEALPNAMFRVRLQNEHVVLATISGKMRQHYIRILPEDRV
+VVELSPYDLNRGRIVYRYK
+>TT9_LFPAFLNI_01626
+MTIVEDMAKKEGVIEVEGTVSEALPNAMFRVRLQNEHVVLATISGKMRQHYIRILPEDRV
+VVELSPYDLNRGRIVYRYK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000797.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000797.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ec1e8da735567034058f0bf42fe5c95e597a19ca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000797.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01184
+MPPKTRASAARKPRRKDKKNITVGQAHIKSTFNNTIVSITDTTGAVISWASSGEVGFKGS
+RKSTPYAAQMAAEQAAKRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTP
+MAHNGARPAKRRRV
+>KBS0714_MOLHKGIG_01694
+MPPKTRASAARKPRRKANKNITVGQAHIKSTFNNTIVSITDTTGAVISWASSGEVGFKGS
+RKSTPYAAQMAAEQAAKRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTP
+MAHNGARPAKRRRV
+>KD337_NAFOICDF_01114
+MPPKTR-SAVRKPRRKDKKNITVGQAHIKSTFNNTIVSITDTTGAVISWASSGEVGFKGS
+RKSTPYAAQMAAEQAAKRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTP
+QAHNGARPAKRRRV
+>SA211_MHAAABBN_01401
+MPPKTRASAARKPRRKANKNITVGQAHIKSTFNNTIVSITDTTGAVISWASSGEVGFKGS
+RKSTPYAAQMAAEQAAKRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTP
+MAHNGARPAKRRRV
+>TT9_LFPAFLNI_01623
+MPPKTRASAARKPRRKANKNITVGQAHIKSTFNNTIVSITDTTGAVISWASSGEVGFKGS
+RKSTPYAAQMAAEQAAKRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTP
+MAHNGARPAKRRRV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000800.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000800.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fcbd259e1a0c0defce3bf56ae59262e5f95449a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000800.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01187
+---MTEQPAPSAPRPSAA-GEEP--------VRVRLDLAYDGGAFRGWARQPGLDSVQGA
+LEDGLERILRRPVRTVVAGRTDAGVHARGQVVHLDLAEGEWAGLTRGRPDLEPGASLARR
+LGGVLSGWDGAVVVHGARRAPAGFDARFSALWREYEYRIDDAPDRRDPRTRAFTHWHGAA
+LDERLMALEADAVLGLHDFLSFCRPREGATTIREVQDLRVARDEDGSVRVRIRADAFCHN
+MVRAVVGALLQVGEGSREPGWLGLRVATPARDSQVRLAPPRGLTLLAVGYPEDGEGLRRR
+AEGTRARRTL-----
+>KBS0714_MOLHKGIG_01691
+---MSEQHRPDA--PTAP-GEPPS-------VRVRLGLAYDGGTFHGWARQPGLDSVQGA
+LEDGLERILRRPVRTVVAGRTDAGVHARGQVVHLDLTETEWAGLTRGRPGLEPATSLIRR
+LGGVLSGWGGAVVVHGARRAPAGFDARFSALWREYEYRIDDAPAARDPRTRGFTHWHGAA
+LDDRLMALEADAVLGLHDFLSFCRPRAGATTIREVQHLEVRRDEDGVVRVRIRADAFCHN
+MVRAIVGALLQVGEGAREPGWLAHRVARPARDSEVRLAPPGGLTLLAVGYPDEAEELHRR
+AEGTRAKRTL-----
+>KD337_NAFOICDF_01117
+MVGMPDDALPAA--PVEPRPEPTTGLPREGEVRLRLDLAYDGSDFRGWAAQPGLATVQGA
+LEGALETIVRRPVRTVVAGRTDAGVHARGQVVHCDLTEAEWSALARGRADVDPADALVRR
+LQGVLRPWQGAVVVRGARRAPDGFDARFSALWRAYEYRISDRPETRDPLARHGVLWHGAR
+VDERLMAVEAGALLGLHDFLSFCRPREGATTVREVQDAEVVRTPDGLVRVRLRADAFCHS
+MVRTIVGALLEVGEGRRTPGWTAARVAGPVRDSAARLAPAHGLTLLEVGYPETGEELRAR
+AEGTRARRAPLADLG
+>SA211_MHAAABBN_01398
+---MSEQHRPDA--PSAP-GEPAS-------VRVRLDLAYDGGTFHGWARQPGLDSVQGA
+LEDGLERILRRPVRTVVAGRTDAGVHARGQVVHLDLTETEWAGLTRGRPGLEPATSLTRR
+LGGVLSGWGGAVVVHGARRAPAGFDARFSALWREYEYRIDDAPAARDPRTRGFTHWHGAA
+LDDRLMALEADAVLGLHDFLSFCRPRAGATTIREVTHLEVRRDEDGVVRVRIRADAFCHN
+MVRAIVGALLQVGERAREPGWLAHRVARPARDSEVRLAPPGGLTLLAVGYPDEAEELHRR
+AEGTRAKRTL-----
+>TT9_LFPAFLNI_01620
+---MSEQHRPDA--PSAP-GEPAS-------VRVRLDLAYDGGTFHGWARQPGLDSVQGA
+LEDGLERILRRPVRTVVAGRTDAGVHARGQVVHLDLTETEWAGLTRGRPGLEPATSLIRR
+LGGVLSGWGGAVVVHGARRAPAGFDARFSALWREYEYRIDDAPAARDPRTRGFTHWHGAA
+LDDRLMALEADAVLGLHDFLSFCRPRAGATTIREVKHLEVRRDEDGVVRIRIRADAFCHN
+MVRAIVGALLQVGEGAREPGWLAHRVARPARDSEVRLAPPGGLTLLAVGYPDEAEELRRR
+AEGTRAKRTL-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000804.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000804.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6096d9189d328cdf9dc559eb964bcac8b72dd270
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000804.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01192
+MSRLFGTDGVRGLANETLTVELSVQLAQAAAPVLGAEALEAGRRPVAVVARDPRISGEFI
+AAAVQAGLASSGVDVWDAGVLPTPAAAYLVGDLGADFGVMISASHNPAPDNGIKFLARGG
+EKLTDAQEDEIIRHLEGVEPRRPQGADVGRVKVFSDAEDRYVVHLLQALPHRLEGLKVVL
+DCAHGAAAGCSPEAFRDAGAEVVVIGASPDGLNINEGYGSTHLEKLQAAVLEHGADLGIA
+HDGDADRCLAVDERGEVVDGDQIMGVMAVAMKDRGVLRDDTLVVTVMSNLGLKLAMGREG
+VQLVETQVGDRYVLAGMKLGDYSLGGEQSGHVIFSDHATTGDGVLTGLQLAARVAETGRP
+LSALAAVMDRLPQVLVNVRGVDKSRAAEDVAVQAAVAEAEARLGETGRVLLRPSGTEPVV
+RVMVEAPDEETAGREAEALADVVQRELRLHV
+>KBS0714_MOLHKGIG_01686
+MSRLFGTDGVRGLANETLTVELSVQLAQAASPVLGAEAFDAGRRPVAVVARDPRISGEFI
+TAAVQAGLASSGVDVWDAGVLPTPAAAYLVGDLDADFGVMISASHNPAPDNGIKFLARGG
+EKLTDAQEDEIIRHLEGVTPRRPQGADVGRVRVFADAEDRYVLHLLQTLPHRLDGLKVVL
+DCAHGAAAGCSPEAFRAAGAEVVVIGASPDGLNINDGYGSTHLEKLQAAVREHGADLGIA
+HDGDADRCLAVDERGEVVDGDQIMGVMAVALKDRGVLRDDTLVVTVMSNLGLKLAMGREG
+VQLVETQVGDRYVLAGMKLGDYSLGGEQSGHVIFSDHATTGDGVLTGLQLASRVAETGTP
+LSELAAVMDRLPQVLVNVRGVDKSRAAEDEAVQAAVAEAEARLGETGRVLLRPSGTEPVV
+RVMVEAPDEETAGREAQVLADVVQRELRLHD
+>KD337_NAFOICDF_01122
+MSRLFGTDGVRGLANDVLTVELSVQLAQAAAPVLGADALAAGRRPVAVVARDPRISGQFI
+AAAVIAGLASSGVDVHDAGVVPTPAAAFLVGDLDADFGVMISASHNPAPDNGIKFLARGG
+EKLTDEQEDEIIQHLESEHPLRPTGAEVGRVRTFSDAEDRYVVHLLQTLPHRLDGLTVVL
+DCAHGAASGCSPDAFRDAGAQVIVIGAEPDGLNINEGVGSTHLEKLQAAVKEHGADLGIA
+HDGDADRCLAVDELGEVVDGDQIMGIMALALKDRGQLKEDTLVVTVMSNLGLKLAMRGAG
+IELVETQVGDRYVLAGMRLGEYSLGGEQSGHVIFADHATTGDGVLTGLQIAARVAETGTP
+LSQLAAVMTRLPQVLVNVRGVDKSRAAEDAAVQSAVREAEARLGETGRVLLRPSGTEPVV
+RVMVEAPDEETARREAEALAEVVQRELRLHD
+>SA211_MHAAABBN_01390
+MSRLFGTDGVRGLANETLTVELSVQLAQAASPVLGAEAFDAGRRPVAVVARDPRISGEFI
+TAAVQAGLASSGVDVWDAGVLPTPAAAYLVGDLDADFGVMISASHNPAPDNGIKFLARGG
+EKLTDAQEDEIIRHLEGVTPRRPQGADVGRVRVFADAEDRYVLHLLQTLPHRLDGLKVVL
+DCAHGAAAGCSPEAFRAAGAEVVVIGASPDGLNINDGYGSTHLEKLQAAVREHGADLGIA
+HDGDADRCLAVDEHGEVVDGDQIMGVMAVALKDRGVLRDDTLVVTVMSNLGLKLAMGREG
+VQLVETQVGDRYVLAGMKLGDYSLGGEQSGHVIFSDHATTGDGVLTGLQLASRVAETGTP
+LSELAAVMDRLPQVLVNVRGVDKSRAAEDEAVQAAVAEAEARLGETGRVLLRPSGTEPVV
+RVMVEAPDEETAGREAQVLADVVQRELRLHD
+>TT9_LFPAFLNI_01615
+MSRLFGTDGVRGLANETLTVELSVQLAQAASPVLGAEAFDAGRRPVAVVARDPRISGEFI
+AAAVQAGLASSGVDVWDAGVLPTPAAAYLVGDLDADFGVMISASHNPAPDNGIKFLARGG
+EKLTDAQEDEIIRHLEGVTPRRPQGADVGRVRVFADAEDRYVLHLLQTLPHRLDGLKVVL
+DCAHGAAAGCSPEAFRAAGAEVVVIGASPDGLNINDGYGSTHLEKLQAAVREHGADLGIA
+HDGDADRCLAVDERGEVVDGDQIMGVMAVALKDRGVLRDDTLVVTVMSNLGLKLAMGREG
+VQLVETQVGDRYVLAGMKLGDYSLGGEQSGHVIFSDHATTGDGVLTGLQLASRVAETGTP
+LSELAAVMDRLPQVLVNVRGVDKSRAAEDEAVQAAVAEAEARLGETGRVLLRPSGTEPVV
+RVMVEAPDEETAGREAQVLADVVQRELRLHD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000805.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000805.fa
new file mode 100644
index 0000000000000000000000000000000000000000..87cb00f03e4f06732407f7a9ed2df9e74cca1f5a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000805.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01193
+MSSEAVPR--PPRWSPFGALLAGLAVLWGAAFLAVDAPVCERHGAPVEWLPCLDRDRGDP
+DVAPQR-----------
+>KBS0714_MOLHKGIG_01685
+MTSDAAPR--PRRWTLFAGLLAGLAVLWSAAFLAVDAPVCARQSAPVEWLPCLDPDRQDS
+EVAPDAGSSADRTTSRP
+>KD337_NAFOICDF_01123
+M----SPRRDPGRLRPLAGPAALLAALWVAAWLAVSVPVCDR-GGPADWLPCVDPGRSVP
+--APGA----------P
+>SA211_MHAAABBN_01389
+MTSDAAPR--PRRWTLFAGLLAGLAVLWSAAFLAVDAPVCARQSAPVEWLPCLDPDRQDS
+EVAPDAGSSADRTTSRP
+>TT9_LFPAFLNI_01614
+MTSDAAPR--PRRWTLFAGLLAGLAVLWSAAFLAVDAPVCARQSAPVEWLPCLDPDRQDS
+EVAPDAGSSADRTTSRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000806.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000806.fa
new file mode 100644
index 0000000000000000000000000000000000000000..22d1edd803630d0b4c0594831615eaa636d96aab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000806.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01194
+---------MKGNVIDLAVAVVIGAAFGAVINAVVDSVLMPLIAALFAAPSFDDWLVLDI
+NGVLVKFGVVLTAVVNFLLIAAAIYFAIVLPMNKMIERRNRRLGIDPAEEEVPEDVALLT
+EIRDLLSAQRGGAAGTTHTTL
+>KBS0714_MOLHKGIG_01684
+MLQGFKDFIMKGNVLDLAVAVIIGAAFGKIVNALVEAVLMPLIAAAVGSPNFDSFAVLTV
+NGNDVKFGVLLTAIVNFLLIAAAVYFAIVMPMNKMIEARNRRLGIDPAEEEVPADVAVLT
+EIRDLLAERRGGPTSGTTT-L
+>KD337_NAFOICDF_01124
+---------MKGNVVDLAVAVVIGAAFGKVVTALVDSVLMPLIAALFKAPSFDSWLVLNL
+NGVDVKFGVVLTAIVNFLLIAAAVYFCIVLPMNTMIERRNRRLGITPAEDEVAPDVAVLT
+EIRDLLARQNGAPR------V
+>SA211_MHAAABBN_01388
+MLQGFKDFIMKGNVLDLAVAVIIGAAFGKIVNALVEAVLMPLIAAAVGSPNFDSFAVLTV
+NGNDVKFGVLLTAIVNFLLIAAAVYFAIVMPMNKMIEARNRRLGIDPAEEEVAADVAVLT
+EIRDLLAERRGGPTSGTTT-L
+>TT9_LFPAFLNI_01613
+MLQGFKDFIMKGNVLDLAVAVIIGAAFGKIVNALVEAVLMPLIAAAVGSPNFDSFAVLTV
+NGNDVKFGVLLTAIVNFLLIAAAVYFAIVMPMNKMVEARNRRLGIDPAEEEVPADVAVLT
+EIRDLLAERRGGPTSGTTT-L
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000807.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000807.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e1411864c79205bd635d3a19b63ebb0643e06cd3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000807.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01196
+M----------------------------------------KDSTQPAPSV-PEDLEDDL
+VSDHHRSPFVELERQTWARLATEMAQPFDQGDVERLRGLGEHLSLREVAEVYLPLSRLLS
+INVEASGALRSATNAFLGERTGRTPYVIGVAGSVAVGKSTTARVLQEMLRRWPTTPRVEL
+ITTDGFLHPNAVLQERGIMARKGFPESYDRRALLRFMVDVKSGAQEVRAPVYSHITYDIV
+PGEEQVVRRPDVLIVEGLNVLAPPVTRADGTAGLSVSDFFDFSVYVDARADWIRSWYIER
+FMGLRSGAFADPRSYFHRYATLSDAEAQGTAESIWDSINGPNLQQNVQPTRGRARLVLTK
+NAQHEVTRVLLRKV
+>KBS0714_MOLHKGIG_01682
+MDRVTYTPP-----------------------------------TSELPLVGPEEPADAV
+PDGHQRSPFVELDRQTWARLASEMAQPFDQADVERLRGLGEHLSLREVAEVYLPLSRLLS
+INVEASAALRSATNAFLGERTGRTPYVIGVAGSVAVGKSTTARVLQEMLRRWPTTPRVEL
+VTTDGFLHPNAVLHERGIMSRKGFPESYDRRALLRFMADVKSGAQEVRAPVYSHITYDIV
+PGEEQVVHRPDVLIVEGLNVLAPPRTRADGTAGLSVSDFFDFSVYVDARASWIRSWYIDR
+FMGLRSGAFADPRSYFHRYSSLSDAEAQATAESIWDSINGPNLEQNVRPTRGRARLVLTK
+NAQHEVTRVLLRKV
+>KD337_NAFOICDF_01125
+M-RADAPPPPPPPCAVVLAGRRDAVAGRRPRACHDGPVKDTRDGGGGAPTAPADAPGPAS
+AGDPHLSPFVELERQTWARLADQLDQPFDQDDVERLRGLGETLSLREVAEVYLPLSRLLG
+IHVEAAGALRRATNEFLGERTGRTPYVIGVAGSVAVGKSTTARVLQEMLRRWPSTPRVEL
+ITTDGFLHPNAVLQERGIMDRKGFPESYDRRALLRFMADVKSGAAEVSAPVYSHVTYDIV
+PERRQVVHRPDVLIVEGLNVLAPPLLRADGTPGLSVSDFFDFSVYVDARADWIRDWYVER
+FMGLRSSAFRDPDAFFHRYASLSDEEARETARSIWDRINGPNLAQNVQPTRGRARLVLTK
+NRQHEVTRVLMRKV
+>SA211_MHAAABBN_01386
+MDRVTYTPP-----------------------------------TSELPLVGPEEPADAV
+PDGHQRSPFVELDRQTWARLASEMAQPFDQADVERLRGLGEHLSLREVAEVYLPLSRLLS
+INVEASAALRSATNAFLGERTGRTPYVIGVAGSVAVGKSTTARVLQEMLRRWPTTPRVEL
+VTTDGFLHPNAVLHERGIMSRKGFPESYDRRALLRFMADVKSGAQEVRAPVYSHITYDIV
+PGEEQVVHRPDVLIVEGLNVLAPPRTRADGTAGLSVSDFFDFSVYVDARASWIRSWYIDR
+FMGLRSGAFADPRSYFHRYSSLSDAEAQATAESIWDSINGPNLEQNVRPTRGRARLVLTK
+NAHHEVTRVLLRKV
+>TT9_LFPAFLNI_01611
+MDRVTYTPP-----------------------------------TSELPLVGPEEPADAV
+PDGHQRSPFVELDRQTWARLASEMAQPFDQADVERLRGLGEHLSLREVAEVYLPLSRLLS
+INVEASAALRSATNAFLGERTGRTPYVIGVAGSVAVGKSTTARVLQEMLRRWPTTPRVEL
+VTTDGFLHPNAVLHERGIMSRKGFPESYDRRALLRFMADVKSGAQEVRAPVYSHITYDIV
+PGEEQVVHRPDVLIVEGLNVLAPPRTRADGTAGLSVSDFFDFSVYVDARASWIRSWYIDR
+FMGLRSGAFADPRSYFHRYSSLSDAEAQATAESIWDSINGPNLEQNVRPTRGRARLVLTK
+NAQHEVTRVLLRKV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000808.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000808.fa
new file mode 100644
index 0000000000000000000000000000000000000000..58f4dbf0ce1a2470920b5510b0f47d2999920129
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000808.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01198
+-------------MCGIVGYIGQPSSTREHGALDVLMEGLRRLEYRGYDSAGVAVVDGGELYHRKKAGKLANLAQELEEH
+PVPTGLVGIGHTRWATHGGPTDVNAHPHVADEGRLAMIHNGIIENYAELREELLAKGAEFLSETDTEVAAHLLTDVYRNA
+GGQDLTRSLQLASQRLEGAFTLLAVHVDHPDRVVASRRNSPLVVGLGEGENFLGSDVSGFIDFTREAIELEQDQVVTITA
+EGVEITDFAGSPAEGKRFTVDWDASAAEKGGYETFMEKEIHDQPQAVQDTLLGRMDAAGTLVLDELRIDPEELKAVNKII
+VLACGTSAYAGTVAKYAIEHWCRIPVEVELSHEFRYRDPIIDPNTLVVSISQSGETMDTLMAVRYAKEQGARTVSICNTN
+GSTIPRESDAVLYTHAGPEIAVASTKAFLAQITAAYLLGLYLAQLNKKLFSGQIKDILADLHAIPGKIQEILDDKEQVKE
+LARSMADTSSVLFLGRNVGYPVAMEGALKLKELAYIHAEGFAAGELKHGPIALIDDGQAVFVVMPSPMDRHSLHAKVVSN
+IQEVRARGARTFVVAERGDQAVRSHAEVVIEVPETQPMLMPLLTTVPLQIFALELASAKGYDVDQPRNLAKSVTVE
+>KBS0714_MOLHKGIG_01680
+MRRSRARSGILVRMCGIVGYIGQPQSDREHGALDVLMEGLRRLEYRGYDSAGVAVVDGGQLYHRKKAGKLANLAEELAEH
+PVPTGLVGIGHTRWATHGGPTDRNAHPHVADEGRLAFIHNGIIENYAELREELLAKGVEFLSETDTEVAAHLLADVYRNA
+AGQDLTRAMQLASQRLEGAFTLLAVHVDHPDRVVASRRNSPLVVGLGEGENFLGSDVSGFIDFTREAIELEQDQVVTITA
+DAVEISDFRGGPAEGKRFTVDWDASAAEKGGFETFMEKEIHDQPQAVQDTLLGRTDAAGALMLDELRIDPEELKAVDKII
+VLACGTSAYAGTVAKYAIEHWCRIPVEVELSHEFRYRDPIIDPHTLVVSISQSGETMDTLMAVRYAKEQGARTVSICNTN
+GSTIPRESDAVLYTHAGPEIAVASTKAFLAQITAAYLLGLYLAQLNKKLFSGQIKDILADLGAIPGKIEEILAGKDQVKE
+LARSMADATSVLFLGRNVGYPVAMEGALKLKELAYIHAEGFAAGELKHGPIALIDDGQPVFVVMPSPLDRHSLHAKVVSN
+IQEVRARGARTFAVAERGDAAVRAQAEVVFEVPETQPMLMPLLTTVPLQIFALELATAKGYDVDQPRNLAKSVTVE
+>KD337_NAFOICDF_01127
+-----------MRMCGIVGYIGQPSSTREHDALEVLMEGLRRLEYRGYDSAGVAVVADGELYHRKKAGKLANLAAELEAE
+PVPSAQVGIGHTRWATHGGPTDVNAHPHVADEGRLALIHNGIIENYAELRAELLEKGVTFLSETDTEVAAHLLADVYRGA
+GEGDLTRTMQLASQRLEGAFTLLAVHVDHPDRVVASRRNSPLVVGVGEGENFLGSDVSGFIDFTKEAIELEQDQVVTITA
+DAVEITDFQGAPAQGKAFTVDWDASAAEKGGFDTFMEKEIHDQPQAVQDTLLGRTDATGALVLDELRIDPEELKAVRKII
+VLACGTSAYAGTVAKYAIEHWCRIPVEVELSHEFRYRDPIIDDHTLVVSISQSGETMDTLMAVRYAKEQGARTLSICNTN
+GSTIPRESDAVLYTHAGPEIAVASTKAFLAQITAAYLLGLYLAQLNKKLFTGQIKDILADLAEIPGKIQEILDSSTPVRE
+LARSMADTSSVLFLGRNVGFPVAMEGALKLKELAYIHAEGFAAGELKHGPIALIDEGQAVFVVMPSPLDRHSLHAKVVSN
+IQEVRARGARTFVVAERGDEAVRDHAEVVFEVPETQPVLMPLLTTVPLQIFALELASAKGYDVDQPRNLAKSVTVE
+>SA211_MHAAABBN_01384
+-------------MCGIVGYIGQPQSDREHGALDVLMEGLRRLEYRGYDSAGVAVVDGGQLYHRKKAGKLANLAEELAEH
+PIPTGLVGIGHTRWATHGGPTDRNAHPHVADEGRLALIHNGIIENYAELREELLAKGVEFLSETDTEVAAHLLADVYRHA
+AGQDLTRAMQLASQRLEGAFTLLAVHVDHPDRVVASRRNSPLVVGLGEGENFLGSDVSGFIDFTREAIELEQDQVVTITA
+DAVEISDFRGGPADGKRFTVDWDASAAEKGGFETFMEKEIHDQPQAVQDTLLGRTDAAGALMLDELRIDPEELKAVDKII
+VLACGTSAYAGTVAKYAIEHWCRIPVEVELSHEFRYRDPIIDPHTLVVSISQSGETMDTLMAVRYAKEQGARTVSICNTN
+GSTIPRESDAVLYTHAGPEIAVASTKAFLAQITAAYLLGLYLAQLNKKLFSGQIKDILADLGAIPGKIEEILAAKDQVKE
+LARSMADATSVLFLGRNVGYPVAMEGALKLKELAYIHAEGFAAGELKHGPIALIDDGQPVFVVMPSPLDRHSLHAKVVSN
+IQEVRARGARTFAVAERGDAAVRGQAEVVFEVPETQPMLMPLLTTVPLQIFALELATAKGYDVDQPRNLAKSVTVE
+>TT9_LFPAFLNI_01609
+-------------MCGIVGYIGQPQSDREHGALDVLMEGLRRLEYRGYDSAGVAVVDGGQLYHRKKAGKLANLAEELAEH
+PIPTGLVGIGHTRWATHGGPTDRNAHPHVADEGRLALIHNGIIENYAELREELLAKGVEFLSETDTEVAAHLLADVYRNA
+AGQDLTRAMQLASQRLEGAFTLLAVHVDHPDRVVASRRNSPLVVGLGEGENFLGSDVSGFIDFTREAIELEQDQVVTITA
+DAVEISDFRGGPAEGKRFTVDWDASAAEKGGFETFMEKEIHDQPQAVQDTLLGRTDAAGALMLDELRIDPEELKAVDKII
+VLACGTSAYAGTVAKYAIEHWCRIPVEVELSHEFRYRDPIIDPHTLVVSISQSGETMDTLMAVRYAKEQGARTVSICNTN
+GSTIPRESDAVLYTHAGPEIAVASTKAFLAQITAAYLLGLYLAQLNKKLFSGQIKDILADLGAIPGKIEEILAAKDQVKE
+LARSMADATSVLFLGRNVGYPVAMEGALKLKELAYIHAEGFAAGELKHGPIALIDDGQPVFVVMPSPMDRHSLHAKVVSN
+IQEVRARGARTFAVAERGDAAVRGQAEVVFEVPETQPMLMPLLTTVPLQIFALELATAKGYDVDQPRNLAKSVTVE
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000809.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000809.fa
new file mode 100644
index 0000000000000000000000000000000000000000..47a95aa245c35aa4715712eed333eae7e6317336
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000809.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_01200
+MHTVDIGQPYPLGATVDETGTNFAVALAREAESVELCLVDEDGVETRLPVVERHGTTWHVHVAGVGHGQRYGYRVTGPWD
+PSRGLWHNPAKILVDPYARAFAGEHEWGQQHHSYDFDEPDRMDTSDNLGTTMLGVVTDDDFDWGEDAPPNIEMTDTVVYE
+THVKGMTMRHPAVPEELRGTYAGMAHPEVVRHLTDLGVTAVELMPVHQFVDDATLQEKGLSNYWGYNTLGFFAPHAAYAA
+SQEVGGQVREFKQMVKDLHAAGLEVILDVVYNHTAEGNDKGPMLSMRGLDNAGYYHLVEADERHYMDYTGTGNSVDLSSP
+KALQLVMDSLRHWVTEMHVDGFRFDLATTLTRVEGEQGPDMFSAFFDVVRQDPVLRTVKLIAEPWDVGWGGYQVGNFPGI
+WSEWNGMYRDTVRDFWRGEPGTLGEFATRLTGSADLYEGDGRSPGASVNFVTAHDGFTLRDLVSYNEKHNAANGEDNNDG
+ESHNRSWNCGVEGETDDPEVLTLRARQQRNFLATLLISQGVPMISHGDELGRTQGGNNNVYCQDNEISWIDWSAVDDSLV
+AFTRDLIALRHDHAVFRRRHHFDGRPAARDVEAPLPDIVWLEPDATAKTEDDWGAEARSIGFYLNGHTLTRGDEDEEGPY
+RDFYVLMNAWWEPVPYTLPGPLFPETWEVVVDTSSHVAPSGSRPRVRAGEVLEVPARSTVILRQV--PEGA
+>KBS0714_MOLHKGIG_01678
+MHTVEIGQPYPLGATVDETGTNFALAVSREVEAVELCLVADDGTETRIPLEERHGTTWHAHVAGIGHGQRYGYRVHGPWD
+PARGLWHNPAKILVDPYARAFTGDYEWGQQHHSYDFDEPDRIDTSDNLGTSMLGVVVAEDFDWGDDAPPAVELTDTVIYE
+THVKGMTKLHPAVPEELRGTYAGMAHPEVVRHLTELGVTAVELMPVHQFVNDATLQEKGLSNYWGYNTLGFFAPHAAYAS
+SSEVGGQVREFKQMVKDLHAAGLEVILDVVYNHTAEGNDKGPMLSLRGLDNAGYYHLVEGDERHYMDYTGTGNSVDLSSP
+KALQLVMDSLRYWVTEMHVDGFRFDLATTLTRVEGEQGPDMFSGFFDVVRQDPVLRTVKLIAEPWDVGWGGYQVGNFPGL
+WSEWNGMYRDAVRDFWRGEPGTLGEFATRLTGSADLYEGDGRGPGASVNFVTAHDGFTLRDLVSYNEKHNEANGEDNNDG
+EAHNRSWNCGVEGETDDPEVVTLRARQRRNFLATLLISQGVPMISHGDELGRTQGGNNNVYCQDNEISWIDWSAMDDSLV
+AFTRDLIALRRDHAVFRRRHHFDGRPAARDVEAPLPDIVWLEPDATAKTEDDWGAEARSIGFYLNGHMLTRGDEEGEEPY
+RDFYVLMNAWWEPVPYTLPGPTFPAEWEVVVDTSSHVAPDGTRPRVRAGDVLELPARSTVVLRQV--PEGA
+>KD337_NAFOICDF_01128
+MHTVDIGQPYPLGATVDEAGTNFAVAVGREVEAVELCLIAEDGSEERIPVTERHDTTWHVHVAGIGGGQRYGWRVHGPWD
+PARGLWHNPHKLLADPYARAFTGDYAWGQQHFSYAFDEPDRMDTADSRGTSMVGVVVDDDFDWGDDAPPQRLLTDTVVYE
+THVKGLTALHPDVPEELRGTYAGVAHPSVLEHLTSLGVTAVELMPVHQFVNDSILQEKGLSNYWGYNSLGYLAPHAAYSS
+ADTVGGQVHEFKQMVKDLHAAGLEVILDVVYNHTAEGNDKGPLLSFRGFDNAGYYHLVEGDERHYMDYTGTGNSVDLSSP
+KALQLVMDSLRYWVTEMHVDGFRFDLATTLTRVEGEQGPDMFSGFFDVVRQDPVLRTVKLIAEPWDVGWGGYQVGNFPGI
+WSEWNGMYRDTVRDFWRGEPGTLGEFATRLTGSADLYEGDGRNPGASVNFVTAHDGFTLRDLVSYNEKHNHANGEDNNDG
+DSHNRSWNCGVEGETDDPEVLTLRARQQRNFLTTLMVSEGVPMLSHGDELGRTQKGNNNVYCQDNELSWIDWSTRDDALI
+AFTRDVIALRRDHAVFRRRQHFDGRPAERDVEAPLPDIVWLEPDATAKTEADWGAEARSIAFYLNGHDLQRREGEPDEAF
+RDFYVLMNAWWEPVPYTLPGPLFPGEWEIVVDTSSHVAPAGTRPHVVAGEVIEVPGRSTMILREVVRQEQG
+>SA211_MHAAABBN_01383
+MHTVEIGQPYPLGATVDETGTNFALAVSREVEAVELCLVADDGTETRIPLEERHGTTWHAHVAGIGHGQRYGYRVHGPWD
+PARGLWHNPAKILVDPYARAFTGDYEWGQQHHSYDFDEPDRIDTSDNLGTSMLGVVVAEDFDWGDDAPPAVELTDTVIYE
+THVKGMTKLHPAVPEELRGTYAGMAHPEVVRHLTELGVTAVELMPVHQFVNDATLQEKGLSNYWGYNTLGFFAPHAAYAS
+SSEVGGQVREFKQMVKDLHAAGLEVILDVVYNHTAEGNDKGPMLSLRGLDNAGYYHLVEGDERHYMDYTGTGNSVDLSSP
+KALQLVMDSLRYWVTEMHVDGFRFDLATTLTRVEGEQGPDMFSGFFDVVRQDPVLRTVKLIAEPWDVGWGGYQVGNFPGL
+WSEWNGMYRDAVRDFWRGEPGTLGEFATRLTGSADLYEGDGRGPGASVNFVTAHDGFTLRDLVSYNEKHNEANGEDNNDG
+EAHNRSWNCGVEGETDDPEVVTLRARQRRNFLATLLISQGVPMISHGDELGRTQGGNNNVYCQDNEISWIDWSAMDDSLV
+AFTRDLIALRRDHAVFRRRHHFDGRPAARDVEAPLPDIVWLEPDATAKTEDDWGAEARSIGFYLNGHMLTRGDEEGEEPY
+RDFYVLMNAWWEPVPYTLPGPTFPAEWEVVVDTSSHVAPDGTRPRVRAGDVLELPARSTVVLRQV--PEGA
+>TT9_LFPAFLNI_01608
+MHTVEIGQPYPLGATVDETGTNFALAVSREVEAVELCLVADDGTETRIPLEERHGTTWHAHVAGIGHGQRYGYRVHGPWD
+PARGLWHNPAKILVDPYARAFTGDYEWGQQHHSYDFDEPDRIDTSDNLGTSMLGVVVAEDFDWGDDAPPAVELTDTVIYE
+THVKGMTKLHPAVPEELRGTYAGMAHPEVVRHLTELGVTAVELMPVHQFVNDATLQEKGLSNYWGYNTLGFFAPHAAYAS
+SSEVGGQVREFKQMVKDLHAAGLEVILDVVYNHTAEGNDKGPMLSLRGLDNAGYYHLVEGDERHYMDYTGTGNSVDLSSP
+KALQLVMDSLRYWVTEMHVDGFRFDLATTLTRVEGEQGPDMFSGFFDVVRQDPVLRTVKLIAEPWDVGWGGYQVGNFPGL
+WSEWNGMYRDTVRDFWRGEPGTLGEFATRLTGSADLYEGDGRSPGASVNFVTAHDGFTLRDLVSYNEKHNEANGEDNNDG
+DAHNRSWNCGVEGETDDPEVVTLRARQRRNFLATLLISQGVPMISHGDELGRTQGGNNNVYCQDNEISWIDWSAMDDSLV
+AFTRDLIALRRDHAVFRRRHHFDGRPAARDIEAPLPDIVWLEPDATAKTEDDWGAEARSLGFYLNGHTLPRGDEEGEEPY
+RDFYVLMNAWWEPVPYTLPGPTFPAEWEVVVDTSSHVAPDGTRPRVRAGDVLELPARSTVVLRQV--PEGA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000810.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000810.fa
new file mode 100644
index 0000000000000000000000000000000000000000..be995cf25ad0c737b55e57caf4722f0d5a79d567
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000810.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01201
+MS-----------------EGSDRARARRGARGVPRGVRALLSA--AAGTATLALAFGVG
+W--AAHAVTSPRPDDPERVDALLVLYSQPRVYDAAIELAADGVADRLFVSAHLGPDGHER
+LCGPEERRDPRLAGVSVECFAPDPLTTQGEAMHAAARMRELGLEHLGVLTFHQHLERSRL
+LVERCWTPQEGRVSMFAFDAGLDRWGRVRHGAYGVLAYGKAMATPGCDQELPGVLQWPLD
+LAKRLRGQPVGAEAGA-AGPAGAVSAAPAAATPAAPARGEGPA
+>KBS0714_MOLHKGIG_01677
+MN-----------------ERVDRGRVR---RGLPRWARALCAT--VATLAALALAFGAG
+W--ATHAVTDPHPDDAPRVDALLVLYSQPRVYDAAIELAASGLTDRLFVSAYLGPDGHEK
+LCGGPEERDPRLAGVTVECFAPDPVTTQGEVIHAGERMRELGLHHLGVLTFHQHVERARL
+LAERCFTPEEGRVSLYAFDAGFDRLGRLQHGVYGVLAYGKAMLTPGCDQQLPGVLQWPLD
+LAKRLRGQPVGDEAGAVVVGARRAGAA----------------
+>KD337_NAFOICDF_01129
+MSRPAGSAPAVDGDAQAAPRGPQAGRRVQADRGRGRRRRRILGAVLAAAALVLAAAFGPG
+LMRAADMTLHPRPDDPPRVDALLVLYSQPAVYDAALELLDRGVADRVFVSAHLGPDGFEK
+FCGTPAQRDPRTRGVEVECFSPDPVTTQGEVMFAADRMRALGLRRLGVLTFDQHLERARL
+LAERCLPAADGSVSMYRFDGGYTGAEKVRQDVYGTAAFAKVALTTDCSGELPDVLQWPLD
+LVKRTAGMPVGAVAES-AAGVGRAGAG---VRP----------
+>SA211_MHAAABBN_01382
+MN-----------------ERVDRGRVR---RGLPRWARALCAT--VATLAALALAFGAG
+W--ATHAVTDPHPDDAPRVDALLVLYSQPRVYDAAIELAASGLTDRLFVSAYLGPDGHEK
+LCGGPEERDPRLAGVTVECFAPDPVTTQGEVIHAGDRMRELGLHHLGVLTFHQHVERARL
+LAERCFTPEEGRVSLYAFDAGFDRLGRLQHGVYGVLAYGKAMLTPGCDQQLPGVLQWPLD
+LAKRLRGQPVGDEAGAVVVGARRAGAT----------------
+>TT9_LFPAFLNI_01607
+MS-----------------AQADRGRVR---RGLPRWARALCAT--VATLAALGLAFGAG
+W--ATHAVTEPHPDDAPRVDALLVLYSQPRVYDAAIELAASGVTDRLFVSAYLGPDGHEK
+LCGGPGERDPRLAGVSVECFAPDPVTTQGEVIHAADRMRELGLHHLGVLTFHQHVERARL
+LAERCFTPEEGRVSLYAFDAGFDRLGRLQHGVYGVLAYGKAMLTPGCDQQLPGVLQWPLD
+LAKRLRGQPVGDEAGAVVVGARRAGAV----------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000811.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000811.fa
new file mode 100644
index 0000000000000000000000000000000000000000..675447dc6ccfabb5bf8bba4d3a9f7159b05bc159
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000811.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01202
+MIVGVGMDVVDVPRFRAQLERTPALRERLFTEDERDLPLRSLAARFAAKEAIAKAMGAPP
+GMMWHHCWIPRPDHGDGRPTVHLTGTVQAQAEAQGITHWHLSLSHDGDVAAAYVVAERRA
+GED-GA
+>KBS0714_MOLHKGIG_01676
+MIVGVGVDVVDVPRFRAQLERTPALRARLFTEDERDLPLRSLAARFAAKEAIAKAMGAPP
+GMMWHHCWIPRPDHGDGRPTVHLTGTVQAQAEALGITHWHLSLSHDGDVATAYVVAERRA
+AEEESA
+>KD337_NAFOICDF_01130
+MIVGIGVDVVDVPRFERQLARTPALRERLFTEEERDLSLRSLAARFAAKEAIAKALGAPP
+GMMWHHCSIPRPAHGDGRPEVRLTDSVRDRADELGVTHWHLSLSHDGDVAVAYVVAERH-
+-----D
+>SA211_MHAAABBN_01381
+MIVGVGVDVVDVPRFRAQLERTPALRARLFTEDERDLPLRSLAARFAAKEAIAKAMGAPP
+GMMWHHCWIPRPDHGDGRPTVHLTGTVQAQAEALGITHWHLSLSHDGDVATAYVVAERRA
+AEEESA
+>TT9_LFPAFLNI_01606
+MIVGVGVDVVDVPRFRAQLERTPALRARLFTEDERDLPLRSLAARFAAKEAVAKAMGAPP
+GMMWHHCWIPRPDHGDGRPTVHLTGTVQAQAEALGITHWHLSLSHDGDVATAYVVAERRA
+AEEESA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000814.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000814.fa
new file mode 100644
index 0000000000000000000000000000000000000000..28ada7e2521515576cd8c9fa164ff604a4ea9b8f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000814.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01205
+M---SRHEPPAPDPALPEPVLTATVPLEGADGTRAFGRALAGVLRAGDVLILTGDLGAGK
+TTFTQGLASGFGVASGVVSPTFVLSRVHPAPADAPAGTPDLVHVDAYRLRSAGELTDLDL
+DATVDRSVTVVEWGRGLAESLAGFPEDPDASWLDVEIVRARGGEDPAPAGPGAD-DGG--
+---IVTDFSDEDGEQAEELRSAVVTGYGPRWAGVRLP
+>KBS0714_MOLHKGIG_01673
+M---SDHAIPAPGATLPEPVLTATVPLEGADGTRAFGRALAGVLRAGDVLILTGDLGAGK
+TTFTQGLASGFGVASGVVSPTFVLSRVHPAPADAPAGTPDLVHVDAYRLRSAGELTDLDL
+DASVDRSVTVVEWGRGMAESLAGFPEDPDASWLDIEIVRARGGED-APAASAGEGEDG--
+---IVTDFSDEDGGQAEELRSAVVTGRGPRWAGVVLP
+>KD337_NAFOICDF_01133
+MIAGRRAEQP-----LPAPVWERRVPLDGAAGTREFGAALAGVLRAGDVLILTGELGAGK
+TTLTQGLGAGLGVREGVISPTFVLSRIHPSLADG----PDLVHVDAYRLRSAGELTDLDL
+EATADRSVTVVEWGRGMAESLAGFPEDPEASWLDVEVLRARGGAD-LPDGPAGG-DAAPD
+APVIVTDFSDEEGEAAEEVRTAVVRAHGPRWAAVALP
+>SA211_MHAAABBN_01378
+M---SDHAIPAPGATLPEPVLTATVPLEGADGTRAFGRALAGVLRAGDVLILTGDLGAGK
+TTFTQGLASGFGVASGVVSPTFVLSRVHPAPADAPAGTPDLVHVDAYRLRSAGELTDLDL
+DASVDRSVTVVEWGRGMAESLAGFPEDPDASWLDIEIVRARGGED-APAAPAGEGEDG--
+---IVTDFSDEDGGQAEELRSAVVTGRGPRWVGVVLP
+>TT9_LFPAFLNI_01603
+M---SDHEFPAPGPTLPEPVLTATVPLEGADGTRAFGRALAGVLRAGDVLILTGDLGAGK
+TTFTQGLASGFGVASGVVSPTFVLSRVHPAPADAPAGTPDLVHVDAYRLRSAGELTDLDL
+DASVDRSVTVVEWGRGMAESLAGFPEDPDASWLDIEIVRARGGED-GPAASAGE-EDG--
+---IVTDFSDEDGGQAEELRTAVVTGRGPRWAGVVLP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000815.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000815.fa
new file mode 100644
index 0000000000000000000000000000000000000000..04138ac1c5b9452c94bf4122ffc3985e8f727f80
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000815.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01206
+MALLLALDSSAAASVAVLRDGEALARWATEDTHAHAEVLAPAVRAVLAEAGVAGAGLDAV
+AVGVGPGPFTGLRAGLATAAALGLAWDVPVRGVRSLDALAHDAAVDAFRHGAEEFVVATD
+ARRREVYWAHYAQVGGQPTLLHGPFVSPADEVTPLPAYGAGAGLYPEALRAVPGWETATP
+SAVGVGQVAELALRRGRGLVPAEPLYLRESDAKVPGPRKRA---GA
+>KBS0714_MOLHKGIG_01672
+MALLLAIDSSAAASVAVLRDGEELARWATDDTHAHAEVLAPAVQTVLGEAGVTGTALDAL
+AVGVGPGPFTGLRAGLATAAALGLAWDVPVHGVRSLDALAHEAGVDAFRHGIEEFVVATD
+ARRREVYWAHYAQVGGQPTLLHGPFVSPADEVTPLPVYGAGAGLYPEALRAVPDWESATP
+SAVGVGQVAELALRRGRGLVPAEPLYLRESDAKVPGPRKRA---GA
+>KD337_NAFOICDF_01134
+MPLLLALDSSSAASVALLRDGEPLAAWSTADTTSHAEVLAPAVRQVLAEAGVAGGDLDGI
+AAGVGPGPFTGLRAGLATAEALGFAWDVPVHGIRSLDALAHRAGTDAFAHAVEEFVVVTD
+ARRREVYWAHYAQVGGQPTLLHGPFVTPAAEVTPLPAYGAGAGLYPEALHAVDGWEGAVP
+DAVSLGRVDELALRRGRGVLPPTPLYLRESDATVPAPRTPARPAGA
+>SA211_MHAAABBN_01377
+MALLLAIDSSAAASVAVLRDGEELAHWATDDTHAHAEVLAPAVQTVLGEAGVTGTALDAL
+AVGVGPGPFTGLRAGLATAAALGLAWDVPVHGVRSLDALAHAAGVDAFRHGIEEFVVATD
+ARRREVYWAHYAQVGGQPTLLHGPFVSPADEVTPLPVYGAGAGLYPEALRAVPDWETATP
+SAVGVGQVAELALRRGRGLVPAEPLYLRESDAKVPGPRKRA---GA
+>TT9_LFPAFLNI_01602
+MALLIAIDSSAAASVAVLQDGEELARWATDDTHAHAEVLAPAVQAVLGEAGVTGTALDAL
+AVGVGPGPFTGLRAGLATAAALGLAWDVPVHGVRSLDALAHEAGVDAFRHGIEEFVIATD
+ARRREVYWAHYAQVGGQPTLLHGPFVSPADEVTPLPVYGAGAGLYPEALRAVPDWETATP
+SAVGVGQVAELALRRGRGLVPAEPLYLRESDAKVPGPRKRA---GA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000816.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000816.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a9d4468d1b267e5b1982c5fd5cc2b8491942c0b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000816.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01207
+MS-PVEPAPGGDERPAEDEHGLPPGYLLRPMTVWDIPEVLAQEATLFPLDAWPARFYEEE
+LAQTGPAGGRDAHGRPPTRDYRVVVRDVPAPVAPDEDGPAPGEIVGYGGIMVVGDVADVQ
+TVGTVAAAQGRGIGAAQLRWMAAEAAARGASALMLEVRASNAAARRLYARHGFEELHVRR
+RYYPGGEDAVIMRKAL
+>KBS0714_MOLHKGIG_01671
+MS-PAEPDPAGDGRPAEDAHGLPPGYLLRPMTVWDIPEVLAHEATLFPLDAWPAHFYEEE
+LAQTGPAGGRDAHGRPPTRDYRVVVRDVAAPGSADDDGPAPGEIVGYGGIMVVGDVADVQ
+TVGTVAAAQGRGIGAAQLRWMAAEAAARGASSLMLEVRASNAAARRLYARHGFEELHVRR
+RYYPGGEDAVIMRKVL
+>KD337_NAFOICDF_01135
+MSLPDATDPGDDAAPA---HGLPAGFLLRPMTVWDVPEVLEHEETLFPLDAWPGHFYAEE
+LAQAGPAGALDAHGRPTTRDYRVVVRQ------------DTGEIVGYGGIMAVGDTADVQ
+TIGTAAAVQGRGIGAAQLRWMVAAARERGAESLLLEVRESNAAARRLYARHGFEPIAVRR
+GYYPGGEDAVVMRRAL
+>SA211_MHAAABBN_01376
+MS-PAEPAPTDDGRPAEDEHGLPPGYLLRPMTVWDIPEVLAHEATLFPLDAWPAHFYEEE
+LAQTGPAGGRDAHDRPPTRDYRVVVRDVPAPGSADDDGPAPGEIVGYGGIMVVGDVADVQ
+TVGTVAAAQGRGIGAAQLRWMAAEAAARGASSLMLEVRASNAAARRLYARHGFEELHVRR
+RYYPGGEDAVIMRKAL
+>TT9_LFPAFLNI_01601
+MS-PAEPAPAGDGRPAEDGHGLPPGYLLRPMTVWDVPEVLAHEATLFPLDAWPAHFYEEE
+LAQTGPAGGRDAHGRPPTRDYRVVVRDAAAPSSADDDGPAPGEIVGYGGIMVVGDVADVQ
+TVGTVAAAQGRGIGAAQLRWMAAEAAARGAGFLMLEVRASNAVARRLYARHGFEELHVRR
+RYYPGGEDAVIMRKTL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000818.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000818.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d5317a2d486d2570a404e677ba3b01ffc08c2060
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000818.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01220
+MDLDARPLAGRKL----LLLDGSRKSIEIVDEAHRLGVHVIVTDYNTPEQSPAKLAADQHFQV-------STSDVDAVVD
+LIRREGVDGVLAGFSDRWLATYAEICAAAQV-------PCYATVDQIRLFTDKKRYKAMLEQFGVPTITGYSVDDATSGA
+IPEEA----FPLIVKPADGSGSRGISVVASQSELQNGLDVALNYSWT----QDLVIERFLPGQEATVYWVFQDGDCRVSL
+MWHRHMHDFGPQDRYRLPVAYSSPSSLLPTYLADVAPSVQAMLRSAGVRDGIMFMQGLIHEGVFHTYDIGYRVTPTQEYR
+VVEE-------------LCGYNPLS---------------MLIHYALTGTMG--------------------------QP
+DLAAVAEPRHP-GYGFNVSTLIRPGT----------------VGAV--------------TGLDDVAALRGILSTTAAID
+AGETLPEEGWGQLRQVAVRTV--GVADSLDLLRQTMRQVD--------ELIDVRDVDGASMVIHPDMPPQDLDAYVL---
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----------------------------------
+>AS2_ACLBLIBL_02299
+M--TENPTQGAPLFHTVLVANRGEIAVRVIRTLRRLGIRSVAVHSDADAQARHVLEADEAVRLGPAPARESYLDIEAVVE
+AARRTGAQAVHPGYG--FLSENADFARALEAAGIVFVGPPMASLDAM---ADKIRAKETVAAYDVPVVPGVADPTLDDAA
+LAAEAQRVGFPLLIKPSAGGGGKGMVAVHAADELPAALASARRTARSAFGDDTLLLERLIAAPRHIEVQVFADAHGTTVH
+LGEREC----SLQRRHQKVIEEAPAPLL-----------------TGLAHGAELRERLGKAAVDAAVSVGYRGAGTVEFL
+VSDEDPDAFFFMEMNTRLQVEHPVSEEVVRVRGQRQDFVELQLRIAAGEPLGFAQDDIALEGAAVEARVYAEDPANGFLP
+STGPVLRWREPQGEGVRVDTLLLPAA-----------------DAA--DPAAVDGGQPEVTGFYDPMVAKVI---TRGAD
+RAEAL-----DRLDAALADTVLFGVRSNLGWLRELAAREDVRAGRLTTELI-----DGMEAWNAPTL-PEDLAALAAEAL
+EEASDDAAAAERHAAGSAWARADGWRGAGAPQPGMRVRVGDEDRVLHGPAADAETEEDESALAGLNLLAGDPRDPRSAWL
+HRDGAAWQVRRLTRAEVVEAARAAAAARRAPGRAQRP----PRPA----------------------------RPCRAPS
+S-------------PSRWPPGTPWPSARSWPWSRP
+>KBS0714_MOLHKGIG_00664
+M--TENHAQGTPLFDTVLLANRGEIAVRVIRTLRRLGIRSVAVHSDADADARHVREADTAVRLGPAPARESYLDIDAVVD
+AARRTGAQAVHPGYG--FLSENADFARALEAAGIVFVGPPVGSLDAM---ADKIRAKETVAAYDVPVVPGIQDPTLTDAQ
+ITAEAEHVGFPLLIKPSAGGGGKGMVAVRAAEELPGALASARRTARSAFGDDTLLLERLITAPRHVEVQVFADAHGATVH
+LGEREC----SLQRRHQKVIEEAPAPLL-----------------TGLAHGAELRERLGRAAVDAAVSVGYRGAGTVEFL
+VSDENPDEFFFMEMNTRLQVEHPVSEEVVRVRGQRLDFVELQLRIAAGEPLGFAQEDVSLDGAAVEARVYAEDPANGFLP
+STGPVLRWREPAGEGVRVDTLLLPSQ-GEERAFGTVLTIRDDEGALWEGLAAPDGAQPEITGFYDPMIAKLI---TRGAD
+RTEAL-----ERLDAALADTVLFGVRSNLGWLRELAARTDVRTGRLTTELI-----DGLEAWTAPAL-PEDLAALAAEAL
+ADVSEDAAAAEQRAAGTAWARADGWRGAGAPQPGMRVRVGDEDRILTAPAADAEVDEDAGALAGVNLLAGDPRDPRSAWL
+HRDGAAWQVRRLTRAEVVEAARAAAAARRAPAGAASPEARTPMPGTVVAVSVATGDTVAAGQELAVVEAMKMEHPVTAAV
+AGVVTVHVAEGDPVAAQALIAVVEPAENAAPEENA
+>SA211_MHAAABBN_00401
+M--TENHAQGTPLFDTVLVANRGEIAVRVIRTLRRLGIRSVAVHSDADADARHVREADTAVRLGPAPARESYLDIDAVVD
+AARRTGAQAVHPGYG--FLSENADFARALEAAGIVFVGPPVASLDAM---ADKIRAKETVAAYDVPVVPGIQDPTLTDEQ
+ITAEAERVGFPLLIKPSAGGGGKGMVAVRAAEELPGALASARRTARSAFGDDTLLLERLITAPRHVEVQVFADAHGATVH
+LGEREC----SLQRRHQKVIEEAPAPLL-----------------TGLAHGAELRERLGRAAVDAAVSVGYRGAGTVEFL
+VSDENPDEFFFMEMNTRLQVEHPVSEEVVRVRGQRLDFVELQLRIAAGGPLGFAQEDVTLDGAAVEARVYAEDPANGFLP
+STGPVLRWREPAGEGVRVDTLLLPSRPAEERAFGSGPQTGPAAGAV--DPVDVDGAQPEITGFYDPMIAKLI---ARGAD
+RAEAL-----DRLDAALADTVLFGVRSNLGWLRELAAREDVRTGRLTTELI-----DGLEAWTAPAL-PEDLAALAAEAL
+ADVSEDAAAAEHRAAGTAWARADGWRGAGAPQPGMRVRVGDEDRILTAPAADAEVDEDAGGLAGVNLLAGDPRDPRSAWL
+HRDGAAWQVRRLTRAEVVEAARAAAAARRAPASAASPEARTPMPGTVVAVSVATGDTVAAGQELAVVEAMKMEHPVTAAV
+AGVVTVHVAEGDAVAAQALIAVVEPTEHAAPAENT
+>TT9_LFPAFLNI_00634
+M--TENHAQGTPLFDTVLVANRGEIAVRVIRTLRRLGIRSVAVHSDADADARHVREADTAVRLGPAPARESYLDIDAVVD
+AARRTGAQAVHPGYG--FLSENADFARALEAAGIVFVGPPVASLDAM---ADKIRAKETVAAYDVPVVPGIQDPTLTDEQ
+ITAEAERVGFPLLIKPSAGGGGKGMVAVRAAEELPGALASARRTARSAFGDDTLLLERLITAPRHVEVQVFADAHGATVH
+LGEREC----SLQRRHQKVIEEAPAPLL-----------------TGLAHGAELRERLGRAAVDAAVSVGYRGAGTVEFL
+VSDENPDEFFFMEMNTRLQVEHPVSEEVVRVRGQRLDFVELQLRIAAGGPLGFAQEDVTLDGAAVEARVYAEDPANGFLP
+STGPVLRWREPAGEGVRVDTLLLPSRPAEERAFGSGPQTGPAAGAV--DPVDVDGAQPEITGFYDPMIAKLI---ARGAD
+RAEAL-----DRLDAALADTVLFGVRSNLGWLRELAAREDVRTGRLTTELI-----DGLEAWTAPAL-PEDLAALAAEAL
+ADVSEDAAAAEHRAAGTAWARADGWRGAGAPQPGMRVRVGDEDRILTAPAADAEVDEDAGALAGVNLLAGDPRDPRSAWL
+HRDGAAWQVRRLTRAEVVEAARAAAAARRAPAGAASPEARTPMPGTVVAVSVATGDTVAAGQELAVVEAMKMEHPVTAAV
+AGVVTVHVAEGDAVAAQALIAVVEPTEHAAPAENT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000820.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000820.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ce931bf787f9c8ddc1ac9667382fef1765ff56e2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000820.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01227
+M---TITRRAALTGLLGGAVLGFTACTSSGYPADPDGTLDRVTGGVLRAGVVHHPPHVDA
+SGAEPVGPEPDLIRGFAAAHDAEIAWTVSGEEALLTALEKGDVDLVAGGLTSDSPWTTHA
+SLTRDYAEAAGPDGEPVKLVMAVPPGENQMLAALEAHLDAQAREAGR
+>KBS0714_MOLHKGIG_01667
+MRTRTLTRRAALTGLLGSAALGFTACTSSGYPADPDGTLDRVTGGVLRVGVVHHPPHVDV
+SGAEPVGPEPDLIRGFAAAHDARVEWTVAGEEALMTALEKGDMDLVAGGLTSASPWTSHA
+SITRDYAEAEGPDGEPVKLVMAVPLGENQMLTALEAYFDQRAAEEAR
+>KD337_NAFOICDF_01138
+M---QTPRRTLLTGALAAAGVVLTGCTSSGYPADPDGTLDRITGGTLRVGASHHPPHVDA
+AGAEPQGPEPDLVRAFAAERDARVEWTVSGEEALMTALKQGDLDLVVGGLTKKSPWTTDA
+GLTRPYAETTGPDGEKAELVMAVPLGENQFQSALERFLDAHGEEAGA
+>SA211_MHAAABBN_01372
+M---TITRRAALAGLLGGAALGFTACTSSGYPADPDGTLDRVTGGVLRAGVVHHPPHVDA
+SGAEPVGPEPDLIRGFAAAHDARVEWTVAGEEALMTALEKGDMDLVAGGLTSASPWTSHA
+SITRDYAEAEGPDGEPVKLVMAVPLGENQMLTALEAYFDQRAAEEAR
+>TT9_LFPAFLNI_01597
+M---TITRRAALAGLLGGAALGFTACTSSGYPADPDGTLDRVTGGVLRAGVVHHPPHVDA
+SGAEPVGPEPDLIRGFAAAHDARVEWTVAGEEALMTALEKGDMDLVAGGLTSASPWTSHA
+SITRDYAEAEGPDGEPVKLVMAVPLGENQMLTALEAYFDQRAAEEAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000823.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000823.fa
new file mode 100644
index 0000000000000000000000000000000000000000..27134e820b620afa9b020d84cbf6cca466da3403
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000823.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01230
+MNLPFADSTQSTLGIEWEVALVDAATGDLRSEAPAILHELHKEAGLAEGEDHPHVTGELL
+QNTVELVTGVHEAVPTAVAELGTIAARVARAAADRGLALYCQGTHPFGEAMTQPITPKER
+YGRMVDLTQYWGRQMLIFGVHVHVGLDDPAKAMPAVNRLISRFPHLLALSASSPFWVGAD
+TGYQSQRTQLFQQLPTAGLPFQFETWAEFEACVQQMTDVGMVEDVTECRWDVRAVPRLGT
+VEMRACDGMATLEEIAAVAAYTQCLVHELSADVERGRHMEILPPWYTQENKWRASRYGMD
+ATVIVDAAGTQVPLAEHLGADLERLAPIAEELGCAAELAHARVLMEHSPADRQRAVEAEA
+LAGPPAEGESAHDAAAPLRAVVLDAAARTRESLERVGG
+>KBS0714_MOLHKGIG_01664
+MTLPFADSAQSTLGIEWELALVDAVSGELRSEAPDLLRALHVTEGLAEDDVNPHMTSELL
+QNTVELVTGVHERVDAATADLGRIAARVADAAAERGISLFCQGTHPFADAIAQPSTPSER
+YDRMLDLTQYWGRQLLIFGVHVHVGLDDVSKAMPVVNGLVNRVPHLLALSASSPFWAGTD
+TGYQSQRTLLFQQLPTAGLPFQFQEWEGFERCVAQMEQVGMIADVTECRWDVRAVPRLGT
+VEMRACDGLATLEEIAAVTAYTQCLVDDLSASLERGETVEVLPPWHVQENKWRAARYGMD
+ATVIVDARGTQVPLAEHLPAEIERLTPVAERLGCAAELAGVQAMIDDGGAARQRRVEAQA
+LAGPPAAGEDADDAVAPLRAVVLDAAARTRASLDGRAG
+>KD337_NAFOICDF_01141
+MSLPFADSAQSTLGIEWELALVDPLTGDLRSEAPGILEELRAEAGLDADADHPHVTGELL
+QNTVELVTGVHGSVPDAVADLGGIAARVQRAAADRGLALFCQGTHPFGEAMTQPITPKAR
+YGRMVDLTQYWGRQMLIFGVHVHIGLDDRAKAMPAVNRLISRLPHLLALSASSPFWVGAD
+TGYQSQRTQLFQQLPTAGLPFQFETWEGFEHCVEQMTGVGMVEDVTECRWDVRAVPRLGT
+VEMRVCDGMATLEEIGAVAAYAQCLVHELSAQVEDDEPVAILPPWYTQENKWRAARYGLE
+ATVITDDAGTQVPLAEHLAADLERLAPVAEELGCAAELAHARVLMEHSPADRQRRVAAEA
+AAGPPRTGEDPADPVAPLRAVVRDAADRTRESLRAFQG
+>SA211_MHAAABBN_01369
+MTLPFADSAQSTLGIEWELALVDAVSGELRSEAPDLLRTLHATEGLAEDDVNPHMTSELL
+QNTVELVTGVHERVDAATADLGRIAARVADAAAARGISLFCQGTHPFADAIAQPSTPSER
+YDRMLDLTQYWGRQLLIFGVHVHVGLDDVSKAMPVVNGLVNRVPHLLALSASSPFWAGTD
+TGYQSQRTLLFQQLPTAGLPFQFQEWEGFERCVAQMEQVGMIADVTECRWDVRAVPRLGT
+VEMRACDGLATLEEIAAVTAYTQCLVDDLSASLERGETVEVLPPWHVQENKWRAARYGMD
+ATVIVDARGTQVPLAEHLPAEIERLTPVAERLGCAAELAGVQAMIDDGGAARQRRVEAQA
+LAGPPAAGEDTDDAVAPLRAVVLDAAARTRASLDGRTG
+>TT9_LFPAFLNI_01594
+MTLPFADSAQSTLGIEWELALVDAVSGELRSEAPDLLRALHVTEGLAEDDVNPHMTSELL
+QNTVELVTGVHERVDAATADLGRIAARVADAAAERGISLFCQGTHPFAEAIAQPSTPSER
+YDRMLDLTQYWGRQLLIFGVHVHVGLDDVSKAMPVVNGLVNRVPHLLALSASSPFWAGTD
+TGYQSQRTLLFQQLPTAGLPFQFQEWEDFERCVAQMEQVGMIADVTECRWDVRAVPRLGT
+VEMRACDGLATLEEIAAVTAYTQCLVDDLSASLERGETVEVLPPWHVQENKWRAARYGMD
+ATVIVDARGTQVPLAEHLPAEIERLTPVAERLGCAAELAGVQAMIDDGGAARQRRVEAQA
+LAGPPAAGEDADDAVAPLRAVVLDAAARTRTSLDGRTG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000825.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000825.fa
new file mode 100644
index 0000000000000000000000000000000000000000..67f627de285a7e4c1f002459c0b771dcb0aba261
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000825.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01232
+MQRSPRTPRLK-ALALASVAALALVGCSAGGAAEGPA-------------SGSADTGSAA
+GSGSASAPAGDGVAAGATVTDMSGAEITLPEEIDSVITTDNRTFRTLDEWGVELSAAPKQ
+LMFKGEGGPGYLQDDEVADIGNHREPDMEVFVTAEPDVVFNGQRFNERKAEIDELTGDAA
+VIDTDFDPKQKPMDEGLKELTTLLGEATGHQDDAAALNKEFDDAVAKAKGAYDSEQTVMG
+LISTGGELSYVAPGTGRSIGPMFDILGLTPALEQAGSDNHQGDDISVEAIAQSNPDWLIV
+MDRDAATGEANATAAELIERSEALKDVTAVKEGNIVYLPQDFYVAEDIQNYTTVMDDLAK
+AFEGAR
+>KBS0714_MOLHKGIG_01662
+MPRSVSAPRLA-RLALTSVAALALVGCSAGGAATGSS----------SASASGESSASAS
+AAGGSSAASG-GIAAGVTVTDMSGAEVTLPEEVDSVIATDNRAFRTLDDWGVELSAAPKQ
+IMYKGEGGPSYLQDDSVADIGNHREPDMELFVTAEPDVVFNGQRFNERKAEIDELTGDAA
+VVDTDFDVTQTPMDEGLKELTTLLGEATGHEADAEKLIADFDAATQRAKDAYDPEQTVMG
+LIASGGELSYVAPSTGRAIGPFFDMLELTPALEQSGTDNHQGDDISVEAIAKSNPDWLIV
+MDRDAAIGEENATAAELIERSEALQDVTAVKEGNIVYLPADFYVAEDIQNHTTVMEDLAK
+AFEGAQ
+>KD337_NAFOICDF_01143
+M----RTARLSTAAALASLAALTLAGCGAGGPAAEGS----------SPASSAASSSPAS
+SAASSSATAG-GVAAGVTVTDMSGTEVTLPEEVDSVIATDNRIFRTLDDWGVELSAAPKQ
+IMYKGEGGPSYLQDDSVADIGNHREPDMELFVTAEPDVVFNGQRFNERKAEIDELTGDAA
+VVDTNFDVTQTPMDEGLKKLTTLLGEATGHEADAEKLIADFDAATQLAKDAYDPEQTVMG
+LIASGGELSYAAPSTGRSIGPFFDMLDLTPALDQSGTDNHQGDDISVEAIAKSNPDWLIV
+MDRDAAVGEENATAAELIERSEALQDVTAVKEGNIVYLPADFYVSEDIQNHTTVMEDLAK
+AFEGAQ
+>SA211_MHAAABBN_01367
+MPSSARAPRLA-RLALTSVAALALVGCSAGGAATGSSSASASGESSASASASGESSASAS
+AAGGSSAASG-GIATGVTVTDMSGAEVTLPEEVDSVIATDNRTFRTLDDWGVELSAAPKQ
+IMYKGEGGPSYLQDDSVADIGNHREPDMELFVTAEPDVVFNGQRFNERKAEIDELTGDAA
+VVDTDFDVTQTPMDEGLKELTTLLGEATGHEADAEKLIADFDAATQRAKDAYDPEQTVMG
+LIASGGELSYVAPSTGRAIGPFFDMLELTPALEQSGTDNHQGDDISVEAIAKSNPDWLIV
+MDRDAAVGEENATAAELIERSEALQDVTAVKEGNIVYLPTDFYVAEDIQNHTTVMEDLAK
+AFEGAQ
+>TT9_LFPAFLNI_01592
+MPRSARAPRLA-RLALTSVAALALVGCSAGGAATGSS----------SASASGESSASAS
+ASGGSSAASG-GIATGVTVTDMSGAEVTLPEEVDSVIATDNRIFRTLDDWGVELSAAPKQ
+IMYKGEGGPSYLQDDSVADIGNHREPDMELFVTAEPDVVFNGQRFNERKAEIDELTGDAA
+VVDTNFDVTQTPMDEGLKELTTLLGEATGHEADAEKLIADFDAATQRAKDAYDPEQTVMG
+LIASGGELSYVAPSTGRAVGPFFDMLELTPALEQSGTDNHQGDDISVEAIAKSNPDWLIV
+MDRDAAIGEENATAAELIERSEALQDVTAVKEGNIVYLPADFYVAEDIQNHTTVMEDLAK
+AFEGAQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000826.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000826.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c8d42a6ec80cac34f981a81810c3e2cf19a98a12
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000826.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01233
+M-TDLHPGVADARTRLPEPGPGERVCWVPPTVLRPQRSRWQRTWPLLAGVAVTVLLAVVS
+LFVGVYDVGAEGGREMFAITRVPRTVALVLAGAAMAMCGLIMQLMTQNRFVEPSTTGTTE
+WAGLGLLVTMILIPGASIVTRMTGAVLFAFVGTMVFFLFLRRVRLQSSLIVPIVGIMLGA
+VVGAASTFLALQTDMLQQVGAWFAGSFTSVVRGRYELLFLVLVVCVAVFVIADRFTVAGL
+GKDVATNVGLNYNAVILTGVAMVAVATGVVTVVIGALPFLGLVVPNIVSMVRGDNLRTNL
+PWVVMVGIWVVIVCDLIGRTVIAPFEVPISLILGLVGAVVFLGLLIRQAKHG
+>KBS0714_MOLHKGIG_01661
+MTLDVRHHVADAPPRLEEPGRGDRVCWVPPAVLRPERTRWQRTWPLLVGVVVTAALIVVS
+LFVGVYDVGAEGGREMFAITRVPRTVALVLAGASMAMCGLIMQLMTQNRFVEPSTTGTTE
+WAGLGLLVTMVLVPGAGLVTRMAGAILFAFVGTLVFFLFLRRVRLQSSLIVPIVGIMLGA
+VVGAASTFLALQTDMLQQVGAWFAGSFTSVVRGRYELLFLVLIVCVAVFVIADRFTVAGL
+GKDVATNVGLNYDAVILTGVAMVAVATGVVTVVIGALPFLGLVVPNLVSMVRGDNLRMNL
+PWVVMVGVWIVIVCDLIGRTVIAPFEVPISLILGLVGAIVFLALLLRQAKHG
+>KD337_NAFOICDF_01144
+MTLDVRHHVADAPPRLEEPGRGDRVCWVPPAVLRPERTRWQRTWPLLVGVLVTAALIVVS
+LFVGVYDVGAEGGREMFAITRVPRTVALVLAGASMAMCGLIMQLMTQNRFVEPSTTGTTE
+WAGLGLLVTMVLVPGSGLVTRMVGAILFAFVGTLVFFLFLRRVRLQSSLIVPIVGIMLGA
+VVGAASTFLALQTDMLQQVGAWFAGSFTSVVRGRYELLFLVLIVCVAVFVIADRFTVAGL
+GKDVATNVGLNYDAVILTGVAMVAVATGVVTVVIGALPFLGLVVPNLVSMVRGDNLRTNL
+PWVVMVGVWIVIVCDLIGRTVIAPFEVPISLILGLVGAIVFLALLLRQAKHG
+>SA211_MHAAABBN_01366
+MILDVRHHVADAPPRLEEPGRGDRVCWVPPAVLRPERTRWQRTWPLLAGIVVTAVLVVVS
+LFVGVYDVGAEGGREMFAITRVPRTVALVLAGASMAMCGLIMQLMTQNRFVEPSTTGTTE
+WAGLGLLVTMVLVPGAGLVTRMAGAILFAFVGTLVFFLFLRRVRLQSSLIVPIVGIMLGA
+VVGAASTFLALQTDMLQQVGAWFAGSFTSVVRGRYELLFLVLIVCVAVFVIADRFTVAGL
+GKDVATNVGLNYDAVILTGVAMVAVATGVVTVVIGALPFLGLVVPNLVSMVRGDNLRTNL
+PWVVMVGVWIVIVCDLIGRTVIAPFEVPISLILGLVGAIVFLALLLRQAKHG
+>TT9_LFPAFLNI_01591
+MILDVRHHVADAPPRLEELGRGDRVCWVPPAVLRPERTRWQRTWPLLVGVVVTAALIVVS
+LFVGVYDVGAEGGREMFAITRVPRTVALVLAGASMAMCGLIMQLMTQNRFVEPSTTGTTE
+WAGLGLLVTMVLVPGAGLVTRMVGAILFAFVGTLVFFLFLRRVRLQSSLIVPIVGIMLGA
+VVGAASTFLALQTDMLQQVGAWFAGSFTSVVRGRYELLFLVLIVCVAVFLIADRFTVAGL
+GKDVATNVGLNYDAVILTGVAMVAVATGVVTVVIGALPFLGLVVPNLVSMVRGDNLRTNL
+PWVVMVGVWIVIVCDLIGRTVIAPFEVPISLILGLVGAIVFLALLLRQAKHG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000828.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000828.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9891cb8843fa53857b7477932bd6da5db702e202
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000828.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01235
+MIELRGVVKRHSDEVCIGPVDLDIEAGGITALVGPNGAGKSTVLTMIGRLQDVDAGTIAV
+GGQDITSTPSRRIAQTLSILRQENHFVTRLTVRQLVGFGRYPYTRGRLTLEDERYVSEAI
+DFLNLGPFENRYLDQLSGGQRQRAYVAMVLAQNTEYVLLDEPLNNLDMQHSVQMMQQLRR
+AADMLGRTVVIVLHDINFAARYADHIVAMGDGQVVETGTPGEILRPEVLERIFRTPCSVV
+DGPHGPLAVYY
+>KBS0714_MOLHKGIG_01659
+MIELRGVVKRHSDEVCIGPVDLDIQAGGVTALVGPNGAGKSTLLTMIGRLQDADAGTIAV
+GGHDITTTPSRRIAQTLSILRQENHFVTRLTVRQLVGFGRYPYTRGRLTLEDERHVSDAI
+DFLNLGPFENRYLDQLSGGQRQRAYVAMVLAQNTEYVLLDEPLNNLDMQHSVQMMQQLRR
+AADELGRTVVIVLHDINFAAHYADRIVAMGDGQVVETGTPAEILRPEVLERIFKTPCSVV
+DGPHGPLAVYY
+>KD337_NAFOICDF_01146
+MIELRGVVKRHSDEVCIGPVDLDIQAGGVTALVGPNGAGKSTLLTMIGRLQDADAGTIAV
+GGHDITTTPSRKIAQTLSILRQENHFVTRLTVRQLVGFGRYPYTRGRLTLEDERHVSDAI
+DFLNLGPFENRYLDQLSGGQRQRAYVAMVLAQNTEYVLLDEPLNNLDMQHSVQMMQQLRR
+AADELGRTVVIVLHDINFAAHYADRIVAMGDGQVVETGTPAEILRPEVLERIFKTPCSVV
+DGPHGPLAVYW
+>SA211_MHAAABBN_01364
+MIELRGVVKRHSDEVCIGPVDLDIQAGGVTALVGPNGAGKSTLLTMIGRLQDADAGTIAV
+GGHDITTTPSRKIAQTLSILRQENHFVTRLTVRQLVGFGRYPYTRGRLTLEDERHVSDAI
+DFLNLGPFENRYLDQLSGGQRQRAYVAMVLAQNTEYVLLDEPLNNLDMQHSVQMMQQLRR
+AADELGRTVVIVLHDINFAAHYADRIVAMGDGQVVETGTPAEILCPEVLERIFKTPCSVV
+DGPHGPLAVYY
+>TT9_LFPAFLNI_01589
+MIELRGVVKRHSDEVCIGPVDLDIQAGGVTALVGPNGAGKSTLLTMIGRLQDADAGTIAV
+GGHDITTTPSRKIAQTLSILRQENHFVTRLTVRQLVGFGRYPYTCGRLTLEDERHVSDAI
+DFLNLGPFENRYLDQLSGGQRQRAYVAMVLAQNTEYVLLDEPLNNLDMQHSVQMMQQLRR
+AADELGRTVVIVLHDINFAAHYADRIVAMGDGQVVETGTPAEILRPEVLERIFKTPCSVV
+DGPHGPLAVYY
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000829.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000829.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ec265b72ddb814a0609a4798b5861dbde7e0aa40
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000829.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01237
+MSVSIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVD
+VAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVVTK
+>KBS0714_MOLHKGIG_01657
+MSVSIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVD
+VAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVVAK
+>KD337_NAFOICDF_01148
+MSVSIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGTRVPVD
+VAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVVTK
+>SA211_MHAAABBN_01362
+MSVSIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVD
+VAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVVTK
+>TT9_LFPAFLNI_01587
+MSVSIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVD
+VAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVVTK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000841.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000841.fa
new file mode 100644
index 0000000000000000000000000000000000000000..74e96bae6a832dca83b05fb78036cc933d8c1273
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000841.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01250
+MEDTTAPASAGRAALDALADARVSASFVILALVAYFAWRLVVRRRRVESAPARPTMLRST
+MHRLQSSPAVRALTERLSGRVSGLADSARAAGRRTAGLQVRWGRTALFLAALAALAVALV
+AGVAAAFGAGTAGLAGACLLFAVAAVAGLRALAVRDRARRAPAAVVEAPA-EAAPHAAP-
+EAPRV--DPERDRRVFETVLGLEDEAARVSAAAPAAPAAAPTVVAASAVRAPEATDTVTL
+PVVPRPTYLDAPEMLRPAPAPLTAPEAAGS-DVRLKDAARAAEHEEALSATAEQDVAA--
+LDLDHVLARRRAS
+>KBS0714_MOLHKGIG_01643
+MDETTAPTRAVQAALDALADARVSASLVIVALVAFLAWRLVLRRHRLASAPARPSMPRSF
+MHRLQSSPAVRALTARFSGRLSAAADAARAA-RGRTGLHIRWGRTALFLAALVALLVFLV
+AGLAAAFGAGTLALAGWSLLFAVAGLAGLRALAVRDRTRRARPAAVVVPERPAAPAAEER
+QAPPA--DPERDRRVLETVLAFETEAPR-PAAAPAAPRVEPVVVTASAA-APAADRVVTI
+PAVPRPTYLDAPEMARPLPAPLETPAPTGA-DTRLTDAARTADDQ--ISAAAEQDIAA--
+LDLDNVLARRRAC
+>KD337_NAFOICDF_01161
+------------------------------------------------------------
+------------MTETPSPREDARLDA--EPGHADSGFHVHWDRASLFLVGVGALAVALV
+TALCALAGLPTAGLAGWSLLVTVGAVVGLRVLAARDQREHHDDLADDADEPNLAEEDLDT
+HELPVVPDPERDRRVLAAALSLTDEAEDEEPAAEPVPVVVDALQRRRAPRIPLG--GIVI
+PEVPRPTYLDAPE-APAAEAQAEYPAEDDAVATRPEAEEQAASAE--VVEIPEPAARAVV
+LDLDGVLARRRAS
+>SA211_MHAAABBN_01348
+MDETTPPTTAVQAALDALADARVSASLVIVALVAFLAWRLVLRRHRLASAPARPSMPRSF
+MHRLQSSPAVRALTARFSGRLGAAADAARAA-RGQTGLHIRWGRTALFLAALAALFVFLV
+AGLAAAFGAGTLSLAGWSLLFAVAGLAGLRALAVRDRTRRARPAADVVPARPAAPAAEER
+QAPPA--DPERDRRVLETVLAFETEAPR-PAAAPAASRVEPVVVTASAA-APAADRAVTI
+PAVPRPTYLDAPEMARPLPAPLETPAPTGA-DTRLQDAASTADDR--ISAAAEQDIAA--
+LDLDNVLARRRAC
+>TT9_LFPAFLNI_01573
+MDETTAPTRAVQAALDALADARVSASLVIVALVAFLAWRLVLRRHRLASAPARPSMPRSF
+MHRLQSSPAVRALTARFSGRLSAAADAARTA-RGRTGLHIRWGRTALFLAALVALLVFLV
+AGLAAAFGAGTLSLAGWSLLFAVAGLAGLRALAVRDRTRRARPAAVVVPERPTAPAAEER
+QAPPA--DPERDRRVLETVLAFETEAPR-PAAAPAAPRVEPVVVTASAA-APAADRAVTI
+PTVPRPTYLDAPEMARPLPAPLETPAPTGA-DTRLTDAARTADDQ--ISAAAEQDIAA--
+LDLDNVLARRRAC
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000843.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000843.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e1cac589dacb72172d60fd6a866b95a72961b0c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000843.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01254
+MDAPQQTP-------APADVGPTAVLARVRTLLAEARTSGAPEDAVDAAPVDHDARQWWELSLEAALRDEPRESARCAES
+GLAALGPGEDGVRLSLLRALAVAADRLGDETGLTRWVEARAALLRTLGRPRQAALETQLGASLVREPDGFEAAVLAGVVE
+EEPGVPGEDPG---DTVLPEAALALAVHRVHASDLDGALAAARRAVESLRGLRAAGAVLPVGSWSSAHLLLSRLHLWRGE
+HAEADEAAAVVTSLPAARAVLASATTVRAIAAHEQDRPTAALALALDAADRMARVGLRRGAASAAALAGRVAGDLEGHEE
+AAVAAWELASVHAEKAEAPEASSLSYWWAHQLVLAGRPDEAEPLLARLVRREAAQGHDVEQARALVDLGHAHHDQDRSEN
+ALPLWREAAGLFEAHGRWEDAARTLLAAGALVNRERDELTRPSALDLFERAVAAARRAVDEDPAVLPAALHAHGYLLCES
+GRPEGLELLDEAVALVREAEAPWQVADYTDTRARALWSLEQGAEAVSTALHAADLFTAAQDPEGAAQAELFAASVVAEDG
+SPEQAATLFRLVSESTQSTLVRLGALTGLHQCLSAVGDHDGAARVRDDLDAVREQLGA-D
+>KBS0714_MOLHKGIG_01641
+MDTPQDPPHRDDPSGGPVEPAVDAALDRVRALLRQARGTAAPD-----APTALDARGWWELSLEAALRDEPRESARLADS
+GLAALGPGQDDVRLALLRALAVAAGQVGDEAALTRWVEARAALLRHLGRPRQAELESQLGAALVRDPDTVEAAVLAGVVE
+DEPGAPGEDPG---DTVLPEAALALAVHRVHTGDLDAALELARRVIAVLGGLRAAGALLPTGSWSSAHLLLARLHLWRGE
+HAEADAAAAVVTALPAARAVLASATTVRAIAAHELDRPTAALDLALEAAERMASVGLRRGAASAAALAGRVAGDLDGYEE
+VAVAAWELASVHAEKAEAPEASSLSYWWAHQLVLAGRADEAEPLLARLVRREATHGRDVEQARALVDLGHAHHDQDRAEN
+ALPLWREAAGLFEAHGQWEDAARTLLAAGALVNRERDERTRPSALDLFERAVAAARQAVDEDPAVLPAALHAHGYLLCES
+GQAEGLDLLEEALALVRDAGADWQVADYTDTRARALWSLERGPEAIATALQAADLFTAAGDREGAAQAELFAAYVVAEDG
+SPEQAATLFRLVCDSTDSTLVRLGALTGLHQCLSALGDHDGAARVRDELDALREGLGA-D
+>KD337_NAFOICDF_01163
+M--------AED---APALLAGRDPLAAVEALLAAARDDAALP-----LPAGSDAPSLRERALEALLREDPASAARAAED
+GLDAPGGQDPALRLALLRLRATAAAHAGDEPALEEWTARRADLLRRLGRPRQADLEVQLGASLLREPDAFEATVLAGVAE
+DERGRITADPAALEDTVLPDALLALCAQRVQAHDLDAALEAAEEALAVIRAQETAGVVLGEAAEPHALLMLARLHLWREE
+HRASDDAARAVLARPCAAVVRASATLVRALAAHGQDRPEAALDFALRAAEAMSRAGLRRGAASAAALVGRVAGARADRQD
+LAVAAWELSCVHAEKAEAPEAPSLAYWWAHQLLIAGRAEEAEPVLTALVRREAAAGDEAAQARALVDLGHACHELDRPSE
+ALPLWREAAELFTRRGHHADAAHTLLAAGALCHRDPHDAAHAGALDLFEQAVDAARRS-EGDSAVLASALHALGYLRCET
+GRGDGLELIDEAIALAEGSGAAWQKADYLDTRARSLWALHRGDDAVSAALTSADLFTDAGDPSGAAQAELFAAHVVAEDG
+RPEQAATLFRLVSESTHSDLVRLGALTGLQQCLAALGEHAEADRVRADADAVRRALGGRD
+>SA211_MHAAABBN_01346
+MDTPQDPPRRDDPSGGPVEPAVDAALDRVHALLRQARVIAAPD-----APTALDARGWWELSLEAALRDEPRESARLADS
+GLAALVPGQDDVRLALLRALAVAAGQVGDEAALTRWVEARAALLRHLGRPRQAGLESQLGAALVRDPDTVEAAVLAGVVE
+DEPGAPGEDPG---DTVLPEAALALAVHRVHTGDLDTALELTRRVIAVLGGLRAAGALLPIGSWSSAHLLLARLHLWRGE
+HAEADAAAAVVTVLPAARAVLASATTVRAIAAHELDRPTAALDLAFEAAERMASVGLRRGAASAAALAGRVAGDLDGYEE
+VAVAAWELASVHAEKAEAPEASSLSYWWAHQLVLAGRADEAEPLLARLVRREATHGRDVEQARALVDLGHAHHDQDRAEN
+ALPLWREAAGLFEAHGQWEDAARTLLAAGALVNRERDERTRPSALDLFERAVAAARQAVDEDPAVLPAALHAHGYLLCES
+GQAEGLDLLEEALALVRDAGADWQVADYTDTRARALWSLERGPEAIATALQAADLFTAAGDREGAAQAELFAAYVVAEDG
+SPEQAATLFRLVCDSTDSTLVRLGALTGLHQCLSALGDHDGAARVRDELDALREGLGA-D
+>TT9_LFPAFLNI_01571
+MDTPQDPPHRDDPSGGPVEPAVDAALDRVRALLRQARGTAAPD-----APTALDARGWWELSLEAALRDEPRESARLADS
+GLAALGPGQDDVRLALLRALAVAAGQVGDEAALTRWVEARAALLRHLGRPRQAGLESQLGGALVRDPDTVEAAVLAGVVE
+DEPGAPGEDPG---DTVLPEAALALAVHRVHTGDLDAALELARRVIAVLGGLRAAGALLPTGSWSSAHLLLARLHLWRGE
+HAEADAAAAVVTALPAARAVLASATTVRAIAAHELDRPTAALDLALEAAERMASVGLRRGAASAAALAGRVAGDLDGYEE
+VAVAAWELASVHAEKAEAPEASSLSYWWAHQLVLAGRADEAEPLLARLVRREATHGRDVEQARALVDLGHAHHDQDRAEN
+ALPLWREAAGLFEAHGQWEDAARTLLAAGALVNRERDERTRPSALDLFERAVAAARQAVDEDPAVLPAALHAHGYLLCES
+GQAEGLDLLEEALALVRYAGADWQVANYTDTRARALWSLERGPEAIATALQAADLFTAAGDREGAAQAELFAAYVVAEDG
+SPEQAATLFRLVCDSTDSTLVRLGALTGLHQCLSALGDHDGAARVRDELDALREGLGA-D
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000844.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000844.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c2786153f1acb24ed02841235e3757a35f9beda6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000844.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01255
+MSPTP-VPDAEPARADAPAGPFQTRAGAYALIVDGGRVLLSSWQGPEHLVWTLPGGGIEL
+GESPEEACRREVWEETGHTAELTGLLGVTTGVIPAERRLRGEALPLLTVQVLYTARITGG
+VLRPEVGGSSTDARWFDLAGLDAVRTAPWVREALARAGAAA--------
+>KBS0714_MOLHKGIG_01640
+MSTTPAAPDAAGAH---PAGPFQTRAGAYALIVDGGRVLLSSWQGPEFLQWTLPGGGIEL
+GESPEEACLREVWEETGHTAELTGLLGVTTGTIPVEKRLRGEPLPLLTVQVLYTARITGG
+VLRPEVGGSSTDARWFDLAELSELRTASWVTEALARAGVDT--------
+>KD337_NAFOICDF_01164
+M--SAASPTAASTA---P-GPFETRAGAYALIVEDGRVLMSAWAGPTGIVWTLPGGGIEL
+GESPEEACVREVEEETGHTAELTGLLGVTTGTIPVERRLRGEPLPLLTVQVLYTARLTGG
+VLRPEADGSSVDAAWFALDGLADVRTSAWVDRALALAGLAADDAAGTAR
+>SA211_MHAAABBN_01345
+MSTTPAAPDAAGAH---PAGPFQTRAGAYALIVDGGRVLLSSWQGPEFLQWTLPGGGIEL
+GESPEEACLREVWEETGHTAELTGLLGVTTGTIPVERRLRGEPLPLLTVQVLYTARITGG
+VLRPEVGGSSTDARWFDLAELSGLRTASWVTEALARAGVAT--------
+>TT9_LFPAFLNI_01569
+MSTTPAAPDAAGAH---PAGPFQTRAGAYALIVDGGRVLLSSWQGPEFLQWTLPGGGIEL
+GESPEEACLREVWEETGHTAELTGLLGVTTGTIPVEKRLRGEPLPLLTVQVVYTARITGG
+VLRPEVGGSSTDARWFDLAELSELRTASWVTEALARAGVDT--------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000846.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000846.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5b609b14a9cb47b092f8f10efae7236d4a3c77ed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000846.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01257
+---MPTPRPRQIRQSAKLLNVRYDVRGPILEEAQRMEAAGHRIMKLNIGNPAPFGFEAPD
+AILQAMYRHLPHAQGYSDSQGIYSARTAVSQYYESRGIRDIGVEDVFIGNGVSEMISMVL
+QALVDDGDEILVPSPDYPLWTGATTLAGGRAVHYRCVEEEGWAPDLEHIESLVTERTKGI
+VLINPNNPTGAVYSRQILQGIIDVARRHGLVLMADEIYEKITYDGARHINAAGLSDDVLT
+LTFSGLSKAYRVAGFRSGWVAVSGPKHRARDFLEGLTLLANMRMCANVPAQHAIQVALGG
+YQSIDDLVLPGGRLLEQRNLAQKRLNDIPGVSVQPAQGALYLFPRLDPEVYAIEDDQEFV
+IDLLRAKKILVSHGGAFNYPHTDHFRLVTLPSVEDLDVALDRLEDFLEDWRERRG
+>KBS0714_MOLHKGIG_01638
+---MPTPHPRQIRQSAKLLNVRYDVRGPILEEAQRMEAAGHRIMKLNIGNPAPFGFEAPD
+AVLAAMHQHLPHAQGYSDSKGIYSARTAVSQYYESRGIRDIGVDDVFIGNGVSEMITMVL
+QALVDDGDEILVPSPDYPLWTGATTLAGGRAVHYRCVEEEGWEPDLEHIESLVTERTKGI
+VLINPNNPTGAVYSRAVLQGIVDVARRHNLVLMADEIYEKITYDGARHINAAGLSDDVLT
+LTFSGLSKAYRVAGYRSGWVAVSGPKHRAADFLEGLTLLANMRMCANVPAQHAIQVALGG
+YQSINDLVLPGGRLLEQRNLAQDRLNAIPGVSVQPAHGALYLFPRLDPEVYAIDDDEAFV
+IELLRAKKILVSHGGAFNYPHSDHFRLVTLPSVKDLDVALDRLEDFLEDWRERHG
+>KD337_NAFOICDF_01166
+---MAPSTPREFRQSSKLLNVRYDVRGPILEEAQRMEAAGHRIMKLNIGNPAPFGFEAPD
+AILQAMYQHLPHAQGYSDSKGIYSARTAVSQYYESRGIRDISVDDVFIGNGVSEMITMVL
+QALVDDGDEILVPSPDYPLWTGATTLSGGRAVHYRCVEEEGWAPDLEHLESLITERTKGL
+VIINPNNPTGAVYSREVLNGVVDIARRHNLVLLADEIYEKITYDGARHINAAGLSDDVLT
+LTFSGLSKAYRVAGYRSGWVAVSGPKHRAKDFLEGLTLLSNMRMCANVPAQHAIQVALGG
+YQSIEDLILPGGRLLEQRNLAQKRLNDIPGVSVQPAHGALYLFPRLDPEVYAIDDDEKFV
+IELLQAKKILVSHGGAFNYPQPDHFRLVTLPSVKDLDIALDRLEDFLEDWRERRG
+>SA211_MHAAABBN_01343
+---MPTPHPRQIRQSAKLLNVRYDVRGPILEEAQRMEAAGHRIMKLNIGNPAPFGFEAPD
+AVLAAMHQHLPHAQGYSDSKGIYSARTAVSQYYESRGIRDIGVDDVFIGNGVSEMITMVL
+QALVDDGDEILVPSPDYPLWTGATTLAGGRAVHYRCVEEEGWEPDLEHIESLVTERTKGI
+VLINPNNPTGAVYSRAVLQGIVDVARRHNLVLMADEIYEKITYDGARHINAAGLSDDVLT
+LTFSGLSKAYRVAGYRSGWVAVSGPKHRAADFLEGLTLLANMRMCANVPAQHAIQVALGG
+YQSINDLVLPGGRLLEQRNLAQDRLNAIPGVSVQPAHGALYLFPRLDPEVYAIDDDEAFV
+IELLRAKKILVSHGGAFNYPHSDHFRLVTLPSVKDLDVALDRLEDFLEDWRERHG
+>TT9_LFPAFLNI_01567
+MGGMPTPHPRQIRQSAKLLNVRYDVRGPILEEAQRMEAAGHRIMKLNIGNPAPFGFEAPD
+AVLAAMHQHLPHAQGYSDSKGIYSARTAVSQYYESRGIRDIGVDDVFIGNGVSEMITMVL
+QALVDDGDEILVPSPDYPLWTGATTLAGGRAVHYRCVEEEGWEPDLEHIESLVTERTKGI
+VLINPNNPTGAVYSRAVLQGIVDVARRHNLVLMADEIYEKITYDGARHINAAGLSDDVLT
+LTFSGLSKAYRVAGYRSGWVAVSGPKHRAADFLEGLTLLANMRMCANVPAQHAIQVALGG
+YQSINDLVLPGGRLLEQRNLAQDRLNAIPGVSVQPAHGALYLFPRLDPEVYAIDDDEAFV
+IELLRAKKILVSHGGAFNYPHSDHFRLVTLPSVKDLDVALDRLEDFLEDWRERHG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000850.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000850.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f291f9914b722177c6d411c6cc246b790207359e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000850.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01262
+MRQLTAVLLALVAGVLAVLATAGALVDEAAHRPALVRQAAEQVASDDDVRAAIPGAVADA
+VGDAVPEGVPGPLRGLAQDLVRPMAESAAQDEGVVRGWSDTADEARRAWLHDLREASDAT
+GPVPGGDFTIPFGPVAQSGVAAALGDLETDLREDRLNLPGQQLVERLLGVDFGDWAVDTL
+VGPLHERAAELRDRTDLTMTVTVDALRDVDRSEVARWVSASVHWRWAAGGAVVLLAAAVL
+IAPLRWRGVAVLLSAATALVGGYLLANATRAEAFAVAAPEGAPAGIARLVERVEQALRPA
+VDAALAPYADGLTTAGWIALAVGAALLVAELVL---SAARAGRTTPPRARGGSRAAADPA
+SR
+>KBS0714_MOLHKGIG_01633
+MRTTLSLLVAALAGLLAVLATAGALVDEATHRPELLRGVTEQVAVDPEVRAAVPGVIDDV
+VHDAVPEQVPDPLAQAAEDLLRPLAQRVADDPQVVQGWSDTADEARRAWLAQLEDPQGAD
+EPGSGADVTIPFGPVAQSGITAALGDIERDLREDRFDLPGQALLETIAGADVGDWAADTL
+LAPLYDRAADLRDSTALRMDARIDALAGTDRATVHRWVDASAHWRWAAAASVLALVGALL
+LAPRGRRGLAVAVAGAVALAGGLIGGARLGPDAVHLTAPEGASPGVAAFVQQMEEAARPA
+FAAAVAPYPQTLTTLGWIVLAAGLLLALAELWVARRGRVRAARADGPPAVGRSHTAADVT
+SR
+>KD337_NAFOICDF_01171
+MRSLLSLLSAVLAALLAVLATAGALVDRTAHQPDTVRQVAERIAADDAVRAAVPRAVTDS
+IEGAVPESVPAPLTQLAQDIVRPIAEDVAKDPDVATGFADTADEARRAWLMDLERARDGG
+EHAPGGEFRIPFGPVAQSGVASAVGDLETRLRSDQLNLPGQSIVEAIVGVDVGTWAADTL
+VKPLYDRAAELRDSTDLTMTVRVDALAGTDRATVARWVDASAHWRWAAGGSVLALVASLL
+LARRGRRGLALAVAGVTVLLAVLLASSAVDSSRWSLAAPDGATGGVAALARAAEAAFRPA
+VADVLAPWLGGLTTWGTVALLAGLVLMAIEVLA---GPVRRRLARTRPSGTGSHTG----
+-R
+>SA211_MHAAABBN_01338
+MRTTLSFLVAALAGLLAVLATAGALVDEATHRPELLRGVTEQVAVDPEVRAAVPGVIDDV
+VHDAVPEQVPGPLAQVAEDLLRPLAQRVADDPQVVQGWSDTADEARRAWLAQLEDPQGAD
+EPGSGADVTIPFGPVAQSGITAALGDIERDLREDRFDLPGQALLETIAGADVGDWAADTL
+LAPLYDRAAELRDSTALRMDARIDALAGTDRATVHRWVDASAHWRWAAAASVLALVGALL
+LAPRGRRGLAVAVAGAVALAGGLIGGARLGPDAVHLTAPEGASPGVAAFVQQMEEAARPA
+FAAAVAPYPQTLTTLGWIVLAAGLLLALAELWVARRGRVRAARADGPPAVGRSHTAADVT
+SR
+>TT9_LFPAFLNI_01562
+MRTTLSFLVAALAGLLAVLATAGALVDEATHRPELLRGVTEQVAVDPEVRAAVPGVIDDV
+VHDAIPEQVPGPLAQTAEDLLRPLAQRVADDPQVVQGWSDTADEARRAWLAQLEDPQGAD
+EPGSGADVTIPFGPVAQSGITAALGDIERDLREDRFDLPGQALLETIVGADVGDWAADTL
+LAPLYDRAAELRDSTALRMDARIDALDGTDRATVHRWVDASAHWRWAAAASVLALVGALL
+LAPRRRRGPAVAVAGAVALVGGLIGGARLGPDAVHLTAPEGASPGVAAFVQQMEEAAGPA
+FAAAVAPYPQTLTTLGWIVLAAGLLLALAELWVARRGRVRAARVDGPPAVGRSHTAADVT
+SR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000851.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000851.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6d7f3d3c2adae407e9595604af37371db0b18dfd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000851.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01263
+MGGMSAPSVSARPSAVGLGMPQVPRVRRTREDVEAAAPVSGDKRVLLAAPRGYCAGVDRA
+VVAVEKALEHHGAPVYVRKEIVHNRHVVDTLTERGVVFVEELDEIPEGALTVFSAHGVSP
+AVVQDAERRSLRTIDATCPLVTKVHREAVRFAKQDKQILLIGHEGHEEVEGTYGEAPEHT
+TVINDVAEARAVQVADPDNLIWLSQTTLSVDETLEIVAVLRERFPNLQDPPSDDICYATS
+NRQAAIKSISPECDLVIIVGSANSSNSVRLKEVAAEYGASRAERVDFASQVDESWFEGVS
+TVGLSSGASVPEVLIQDVLALLAEYGYGQVDEVVTAEEDIMFSLPKELRAELKRVGDDSR
+GLGGRRQT-EG
+>KBS0714_MOLHKGIG_01632
+MEGMSAPSVSARPSAVGLGMPQVPRVRRSREEVEAAAPVSGEKRVLLAAPRGYCAGVDRA
+VVAVEKALEHHGAPVYVRKEIVHNRHVVDTLTERGVVFVDELDEVPEGALTVFSAHGVSP
+AVVEEAAQRNLRTIDATCPLVTKVHREAVRFAKQDKRILLIGHDGHEEVEGTFGEAPEHT
+TVINDVAEARTVQVEDPDNLIWLSQTTLSVDETLEIVSVLRERFPNLQDPPSDDICYATS
+NRQAAIKSISPECDLVIIVGSANSSNSVRLKEVAAEYGASRAERVDFANQVDESWFEGVA
+TVGLSSGASVPEVLVQEVLALLAEYGYGQVDEVVTAEEDIIFSLPKELRAEMKRVGDDGR
+ALGGRRRAAEA
+>KD337_NAFOICDF_01172
+MDGMSVPTASA-PSTVGLGMPQVPRTRRSREEVEAAAPVAGDKRVLLAAPRGYCAGVDRA
+VVAVEKALEHHGAPVYVRKEIVHNRHVVDTLTERGAVFVQELDEVPAGALTVFSAHGVSP
+AVVAEAAERDLQTIDATCPLVTKVHREAVRFARQDKRILLIGHTGHEEVEGTYGEAPEHT
+TVINDVEEARTVQVDDPDNLIWLSQTTLSVDETLEIVAVLRERFPNLQDPPSDDICYATS
+NRQAAIKRISPQCDLVIIVGSANSSNSVRLKEVALEYGAARAERVDFASQVDESWFEGVA
+TVGLSSGASVPEVLVQDVLALLADYGYGQVEEVVTAEEDIIFSLPKELRAQLKQAGDEER
+SLGGRRRPAE-
+>SA211_MHAAABBN_01337
+MEGMSAPSVSARPSAVGLGMPQVPRVRRSREEVEAAAPVSGEKRVLLAAPRGYCAGVDRA
+VVAVEKALEHHGAPVYVRKEIVHNRHVVDTLTERGVVFVDELDEVPEGALTVFSAHGVSP
+AVVEEAAQRNLRTIDATCPLVTKVHREAVRFAKQDKQILLIGHEGHEEVEGTFGEAPEHT
+TVINDVAEAQTIQVEDPDNLIWLSQTTLSVDETLEIVSVLRERFPNLQDPPSDDICYATS
+NRQAAIKSISPECDLVIIVGSANSSNSVRLKEVAAEYGASRAERVDFTNQVDESWFEGVA
+TVGLSSGASVPEVLVQEVLALLAEYGYGQVDEVVTAEEDIIFSLPKELRAELKRVGDESR
+SLGGRRRDAEA
+>TT9_LFPAFLNI_01561
+---MSAPSVSARPSAVGLGMPQVPRVRRSREEVEAAAPVSGEKRVLLAAPRGYCAGVDRA
+VVAVEKALEHHGAPVYVRKEIVHNRHVVDTLTERGVVFVDELDEVPEGALTVFSAHGVSP
+AVVEEAAQRNLRTIDATCPLVTKVHREAVRFAKQDKQILLIGHEGHEEVEGTFGEAPEHT
+TVINDVAEAQTIQVEDPDNLIWLSQTTLSVDETLEIVSVLRERFPNLQDPPSDDICYATS
+NRQAAIKSISPECDLVIIVGSANSSNSVRLKEVAAEYGASRAERVDFANQVDESWFEGVA
+TVGLSSGASVPEVLVQEVLALLAEYGYGQVDEVVTAEEDIIFSLPKELRAEMKRVGDDGR
+ALGGRRRDAEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000855.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000855.fa
new file mode 100644
index 0000000000000000000000000000000000000000..69b01931eb199be3f2f117721ab8a24ad9d8c25c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000855.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01271
+MARPIDPFREMERPFREMERLVNGLT-RTSGTASMPMNLFREGDRFVAEVELPGVDPASI
+DVDVEERTLTVRAERKESPAGEDRRWLTRERSAGTFARQLTLGEGLALDRIEADYEDGVL
+TLTIPVAEQAKPRKISVKHSGAG-AGAGQTVPGE-TAEVEER-----SAEQEAAQNGGAP
+QA
+>KBS0714_MOLHKGIG_01626
+MARPID-------PFREMERLVNGLTPRATGTVSMPMNLYREGDVFVAEVELPGVDPASI
+DVDVEERTLTVRAERKEDPAREDRRWLTRERSAGTFARQLTLGEGLALDRIQADYSDGVL
+TLTIPVAEQAKPRKISVTHGGAA-PVAGQTVEGE-TAET----------TGE--------
+--
+>KD337_NAFOICDF_01181
+MARPIDPFREMERPFREMERLVNGLTTRATGTASMPMNLYREGDAFVAEVELPGVDPASI
+DVDVEERTLTIRAERKEAAASEGRQWLTRERSSGTFARQLTLGQGLALDRIEADYRDGVL
+VLSIPVAEQAKPRKIQVKHSAAD-QVEGQEVAGQESVQDSAAVEAPQQPSGE--------
+--
+>SA211_MHAAABBN_01332
+MARPID-------PFREMERLMTGFA-RTSGAASMPMNLYREGDVFVAEVELPGVDPSSI
+DVDVEERTLTVRAERKEAPAGEDRRWLTKERPAGTFARQLNLGQGLALDKIEADYSDGVL
+LLTIPVAEQAKPRKIQVKHTGSAAQVEGEAVEGE-AVEGSAA-----EASGE--------
+--
+>TT9_LFPAFLNI_01555
+MARPID-------PFREMERLVNGLTPRATGTVSMPMNLYREGDVFVAEVELPGVDPASI
+DVDVEERTLTVRAERKEDPAREDRRWLTRERSAGTFARQLTLGEGLALDRIQADYSDGVL
+TLTIPVAEQAKPRKISVTHGGTA-PVAGQTVEGE-TAET----------TGE--------
+--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000856.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000856.fa
new file mode 100644
index 0000000000000000000000000000000000000000..32c7c317994807a326e70492df898bbdba0bccb1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000856.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01286
+MSAADVPAGELVAGELTLTGRITTASNATFLGAIGDTSVVYKPVAGEAPLWDFPAGTLAR
+REVAAYLVSEALGWDIVPRTWLREGPFGEGMVQLWQEQDPEQDAVDLFPADEVPASGWLT
+ILEGEDEGGNRLALAHEDSAALRRMAVFDVLVNNADRKGAHILAMPGGHRYGVDHGLTFH
+VADKLRTVLWGWLGEALSEEERDGVARVLDGLDGELGRGLVQLLSAEEVEALAERCAQLL
+DDGVFPAPSGLTPAVPWPLF
+>KBS0714_MOLHKGIG_01612
+MSAADVPAGELMSGELTLTGRITTASNATFLGAIGDTPVVYKPVAGEAPLWDFPAATLAR
+REVAASLVSEALGWDIVPRTWLRDGPFGKGMVQLWQEQDPEQDAVDLFPADEVPASGWLT
+VLEGEDEGGNRLVLAHEDSAALRRMAVFDVLVNNADRKGAHILAMPGGHRHGVDHGLTFH
+VQDKLRTVLWGWLGEALSEEERDGVARVLDGLDGELGQGLAELLGAEEVEALAARCAQLL
+DDGIFPAPSGLTPAVPWPLF
+>KD337_NAFOICDF_01191
+MSAADVPAGELVDGELTLTGRITTASNATFLGAIGDTPVVYKPVAGEAPLWDFPAGTLAR
+REVAAHLVSEALGWEIVPRTWLRDGPFGEGMVQLWQEQDPEQDAVDLFPADEVPAAGWLT
+ILEGEDEEGRRLALAHENSAALRRMAVFDVIVNNADRKGAHILAMPGGHRYGVDHGLTFH
+VAGKLRTVLWGWLGEALSEEERDGVGRVLDGLDGELGRGLAELLSAEEVEALAERGARLL
+DDGIFPAPSGRTPAVPWPLF
+>SA211_MHAAABBN_01323
+MSAADVPAGELVAGELTLTGRITTASNATFLGAIGDTPVVYKPVAGEAPLWDFPAGTLAR
+REVAASLVSEALGWDIVPRTWLRDGPFGEGMVQLWQEQDPEQDAVDLFPAGQVPASGWLT
+ILEGEDADGNRLVLAHEDSAALRRMAVFDVIVNNADRKGAHILAMPGGHRHGVDHGLTFH
+VADKLRTVLWGWLGEELSEEERDGVGRVLDGLDGELGRGLAELLSAEEVQALAERSAGLL
+DDGRFPAPSGLTPAVPWPLF
+>TT9_LFPAFLNI_01538
+MSAADVPAGELVSGELTLTGRITTASNATFLGAVGDTPVVYKPVAGEAPLWDFPAGTLAR
+REVAAHLVSEALGWDVVPRTWLRDGPFGEGMVQLWQEQDPEQDAVDLFPADEVPASGWLT
+ILEGEDEDGNRLALAHEDSAALRRMAVFDVLVNNADRKGAHILAMPGGHRHGVDHGLTFH
+VEDKLRTVLWGWLGEALSDEERDGVARVLDGLDGELGRGLAELLSAVEIGALAERSAGLL
+DDGTFPAPSGLTPAVPWPLF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000857.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000857.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1b78b674ff781d95930fdd7948b9f06c0dd34bf4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000857.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01287
+MTESPAHVHEFDWPDRVVIGTIGRPGARTFYLQVRTGPRLVSLALEKQQSALMAEMLDEI
+LDDLMALEGNPHSVPASTPVELVDNDPLDPVQEWFRVGAIGLGWDPTTAQVLIDAHPLSD
+DDADPALEVDAEAVRVRMPVGAARAFARRTREVVDAGRPICSDCGQPIDPDGHDCTLPDS
+>KBS0714_MOLHKGIG_01611
+MTDAPAPAHEFDWPDRVVIGTLGRPGARTFYLQVRTGPRLVSLALEKQQSALMAEMIDEI
+LDDLMALEGNPHSVPASTPVELVDNDPLDPVQEWFRVGAIGLGWDPTTAQVLVDAHPLTD
+DDADPALEADAEAVRVRMPVGAARAFARRTREVVDAGRPVCSDCGQPIDPDGHDCTFPDS
+>KD337_NAFOICDF_01192
+MTDAPAPAHEFDWPDRVVIGTLGRPGARTFYLQVRTGPRLVSLALEKQQSALMAEMIDEI
+LDDLMALDGNPHSVPASTPVELVDNDPLDPVQEWFRVGAIGLGWDPTTAQVLIDAHPLTD
+DDADPVLETDAEAVRVRMPVGAARAFARRTREVVDAGRPICSDCGQPIDPDGHDCTLPDS
+>SA211_MHAAABBN_01322
+MTDAPAPAHEFDWPDRVVIGTLGRPGARTFYLQVRTGPRLVSLALEKQQSALMAEMIDEI
+LDDLMALEGNPHSVPASTPVELVDNDPLDPVQEWFRVGGIGLGWDPTTAQVLIDAHPLSD
+DDADPALEADAEAVRVRMPVGAARAFARRTREVVDAGRPFCSDCGQPIDPDGHDCTLPDS
+>TT9_LFPAFLNI_01537
+MTDAPAPAHEFDWPDRVVIGTLGRPGARTFYLQVRTGPRLVSLALEKQQSALMAEMIDEI
+LDDLMALEGNPHSVPASTPVELVDNDPLDPVQEWFRVGAIGLGWDPTTAQVLIDAHPLSD
+DDADPALEADAEAVRVRMPVGAARAFARRTREVVDAGRPICSDCGQPIDPDGHDCTLPDS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000858.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000858.fa
new file mode 100644
index 0000000000000000000000000000000000000000..83962b1ff89938124292ce14453b82227a8354fe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000858.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01288
+MATVLLVRHGRTTANASGLLAGRTPGVSLDEHGREQAARTADRIAAVPVTAVVASPLERC
+AQTARALLDRQPGTVPSLVDDDLTECDYGQWQGRALSDLATEPLWATVQSRPSAVVFPGG
+ESMAGMQARAVAAIRRHDAAVEAEHGPGAVWVAVSHGDVIKSILADALGMHLDMFQRLDV
+GPASVSIVSYGSSRPRVLTVNTDAGDLSWLATKGPSGDAPVGGGAGTDPVADSANGRTPR
+IDA
+>KBS0714_MOLHKGIG_01610
+MATVLLVRHGRTTANATGLLAGRTPGVSLDDHGREQAARTGGRIAAVPVAAVVASPLERC
+AQTARALLDRQPGTVPSLVDDDLTECDYGQWQGRALSDLATEPLWATVQTQPSAVVFPGG
+ESMAGMQARAVAAIRRHDAAVEAEHGPGAVWVAVSHGDVIKSILADALGTHLDLFQRIEV
+GPASVSIVSYGPARPRVWAMNTDAGDLSWLATLGPSDDAPVGGGAGTG--AGAVDERTPR
+IVA
+>KD337_NAFOICDF_01193
+MATVLLVRHGRTTANATGLLAGRTPGVSLDDHGREQAARTADRVAAVPVAAVVASPLERC
+AQTARALLDRQSGAVPSLVDDDLTECDYGQWQGRALSDLATEPLWATVQTQPSAVVFPGG
+ESMAGMQARAVAAIRRHDAAVEAEHGPGAVWVAVSHGDVIKSILADALGTHLDLFQRIEV
+GPASVSIVSYGPSRPRVWATNTDAGDLSWLSSLGPSDDAPVGGGAGTG--PGAVDEQTPR
+IVT
+>SA211_MHAAABBN_01321
+MATVLLVRHGRTTANATGLLAGRTPGVSLDDHGREQAARTADRIAAVPVAAVVASPLERC
+AQTARALLDRQPGTVPSLVDDDLTECDYGQWQGRALSDLATESLWATVQTQPSAVVFPGG
+ESMAGMQARAVAAIRRHDAAVEAEHGPGAVWVAVSHGDVIKSILADALGTHLDLFQRIEV
+GPASVSIVSYGPARPRVWAMNTDAGDLSWLATLGPSDDAPVGGGAGTG--TGAVDERTPR
+IVA
+>TT9_LFPAFLNI_01536
+MATVLLVRHGRTTANASGLLAGRTPGVSLDDHGREQAARTADRIATLPVAAVVASPLERC
+AQTARALLDRQPGTVPSLVDDDLTECDYGQWQGRALSDLATESLWATVQTQPSAVVFPGG
+ESMAGMQARAVAAIRRHDAAVEAEHGPGAVWVAVSHGDVIKSILADALGTHLDLFQRIEV
+GPASVSIVSYGPARPRVWAMNTDAGDLSWLATLGPSDDAPVGGGAGTG--TGAVDEQTPR
+IVT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000866.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000866.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9f4b7625ee5b948dcfc8b103b8e0e73a57ab1323
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000866.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01301
+MPRTRPPAQDFLAELPDGTVKQRNPFSGTEVWTVPGRGHRPLGIARPAAQPLDPDDDGRH
+CAFCSARLLETPPEKSRVV--RTEDGEHA--ILRDVPAEALFDTVPEFRRVPNLFEILSY
+EYWRLNHGFVPAPGVADRRAAYLATETGRAHVLAVVGNKLRAAGRSAEEVEAMPEEERIE
+AASGFFGGGHDVIIARRHFADGAQDDHALAGSGTLSPEEHRRFIALTVDSMRDLYAANPH
+ARYVSVFQNWLKPAGASFDHLHKQLVAIDEVGVQNEAAIARVRRNPDAFAQDALGYAAKQ
+GLMIARNEHAAMFAGFGHRYPTVEIHSLSPTCEPWEQTDAERDAMADLIHAAHAATGADV
+PSNEEWHTRPTGVAEPLPWRVCLKWRVSTLAGFEGATKIYLNTVSPGSVRERVATRLQEL
+QAAGAIADGIRIDDDGH---GAV---------------
+>KBS0714_MOLHKGIG_01595
+---MHPSVSEPLTRLPDGTVKQRNPFTGTEVWTVPGRGHRPLGLVRPAPQPLDPAQHGRH
+CAFCEHRMLETPPEKSRIVSTRADDGAPAWQILRHPAAERLEETIPAFRRVPNLFEILSY
+DYWRLNHGYELPPDACRRRDEYLATEAGRAHVRAVVTAKLRASGRSAEEAAAMSEAELIG
+ASAAFFGGTHDVVIARRHFVDGAVDDHQLASSGTLTPDEHHAFMALTADAMRDLYATTPA
+VRYVSVFQNWLKPAGASFDHLHKQLVAIDEVGAQNVAALDRLREDPQVFNQAALDVAVAH
+DLMIAANEHAVMFAGFGHRYPTVEVYSTSPVGQPWRQTAAELRAVSDLLHAAHAATGPDV
+PSNEEWHTRPPGVADPMPWRVMLKWRVSTLAGFEGATKINVNTLSPWDVRDRVLARLREL
+WAAGALADGMRIGADARVRPGMLRYAD-----------
+>KD337_NAFOICDF_01214
+-------MSEPLTRLPDGTVKQRNPFTGTEVWTVPGRGHRPLGLVRPAPQPLDPAQHGRH
+CAFCEHRMLETPPEKARIVPTRADDDAPAWQILRHPAAERLGETTPAFRRVPNLFEILSY
+DYWRLNHGYELPPDARRRRDEYLATEAGRAHVRAVVAAKLRASGRSAEEAAAMSEAELIA
+ASAAFFGGTHDVVIARRHFVDGAVDDHQLASSGTLTLDEHHAFLALTADAMRDLYATTPA
+VRYVSVFQNWLKPAGASFDHLHKQLVAIDEVGAQNAAALDRLREDPQVFNHAALDVAVAH
+DLVIAANEHAVMFAGFGHRYPTVEVYSTSPVGQPWRQSAAELRAVSDLLHAAHAATGPDV
+PSNEEWHTRPPGFASPMPWRVMLKWRVSTLAGFEGATKINVNTLSPWDVRDRVLARLREL
+RAAGALADGMRIGADARVRPGALRYAD-----------
+>SA211_MHAAABBN_01307
+---MHPSVSEPLTRLPDGTVKQRNPFTGTEVWTVPGRGHRPLGLVRPAPQPLDPAQHGRH
+CAFCEHRMLETPPEKSRIVSMRADDGAPAWQILRHPAAERLEETTPAFRRVPNLFEILSY
+DYWRLNHGYELPPDARRRRDEYLATEAGRAHVRAVVAAKLRASGRSAEEAAAMSEAELIG
+ASAAFFGGTHDVVIARRHFVDGAVDDHQLASSGTLTPDEHHAFLALTADAMRDLYATTPA
+VRYVSVFQNWLKPAGASFDHLHKQLVAIDEVGAQNVAALDRLREDPQVFNHAALDVAVAH
+DLMIAANEHAVMFAGFGHRYPTVEVYSTSPVGQPWRQTAAELRAVSDLLHAAHAATGPDV
+PSNEEWHTRPPGVASPMPWRVMLKWRVSTLAGFEGATKINVNTISPWDVRDRVLARLREL
+RAAGALADGMRIGADARVRPGALRYADGAARLTPPRGR
+>TT9_LFPAFLNI_01522
+---MHPSVSEPLTRLPDGTVKQRNPFTGTEVWTVPGRGHRPLGLVRPAPQPLDPAQHGRH
+CAFCEHRMLETPPEKSRIVSMRADDGAPAWQILRHPAAERLEETTPAFRRVPNLFEILSY
+DYWRLNHGYELPPDARRRRDEYLATEAGRAHVRAVVAAKLRASGRSTEEAAAMSEAELIA
+ASAAFFGGTHDVVIARRHFVDDAVDDHQLASSGTLTPDEHHAFLALTADAMRDLYATTPA
+VRYVSVFQNWLKPAGASFDHLHKQLVAIDEIGAQNAAALDRLREDPQVFNHAALDVAVAH
+DLVIAENEHAVMFAGFGHRYPTVEVYSTSPVGEPWRQDPAELRGMSDLLHAAHAATGPDV
+PSNEEWHTRPPGVADPMPWRVMLKWRVSTLAGFEGATKINVNTLSPWDVRDRVLARLREL
+RAAGALADGMRIGADARVRPGMLRYAD-----------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000868.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000868.fa
new file mode 100644
index 0000000000000000000000000000000000000000..10927e481ef797edd6400058ec7e746b6d6d5114
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000868.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01333
+MRDMFVVLGPAPASVGSPGAWWAV--------------D--GDDATPLGSCPAGSVAGLVAGLPARLGVDPSTVRWVLAD
+VGTEYAAWLAAGVRVDRCWDVALVQRILRHAATAPGSGVRYTPVAQLEVADPTEPERP--ARVPAGQESFFDLPDGTGSA
+PDVTVLAAELAAQRAAVEGSAHPHRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLTEQLGPRPAQGERPARLQALA
+ERIADVLGSPGLSPDSQPSLLRALQTAGVAVESTRQWDLKHWIDAGGAEREARAALLAPLLEYKALARLWTANGWHWLDQ
+WIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQIPAGVRDAVRADPGWALTVADASQVEPRILAAMAADEALARAGTTPDLY
+REVAEQGRAAGTALADRGRAKVALLGAMYGSTTGDSAALMPHLRRLYPRAIGLLERAASVGEAGGQVATWLGRWSPAPEQ
+AWLDSVADVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRAAGLGTELVFFVHDEVVLHGPAPEAE
+AVRGVVAEAASAAGRLLFGAAPVDFPLTVASLDSYADAK
+>KBS0714_MOLHKGIG_01589
+---MFVVLGPAPASVGSPGAWWAL--------------DGEGDGASPLGSCAAGSVAGLVAGLPARLGVDPSTVRWVLAD
+VGTEYAAWLVAGVRVDRCWDLALVQRILRHAATAPGSGVRYTPVAQLEVADPTEPVRP--ARVPAGQESFFDLPDEAGPA
+PDVTVLAAELAAQRAAVEGSAHPHRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQTLA
+ERIADVLGSPGLSPDSQPSLLRALQTAGVAVESTRQWDLKHWIDAGGAEREARAALLAPLLEYKALARLWTANGWHWLDQ
+WIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPAGVRDAVRADPGWTLTVADASQVEPRILAAMAADEALARAGTTPDLY
+REVAEQGRAAGTALADRGRAKIALLGAMYGSTTGDSAALMPHLRRLYPRAIGLLERAASVGEGGGQVSTWLGRWSPAPGR
+KWQESVSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPATEVE
+AVRTVVAESASAAGRLLFGPAPVDFPLTVSSVGSYADAK
+>KD337_NAFOICDF_01231
+---MVIVLGPDPAPGTPPGRWCALVLPDDAAPSPADASPGQGDGG-PVARFARDELADVVRALPGRLGVDPAVVRWTVAD
+AAEVYPALLAAGVRWDRCRDLSLGQRILRGAAAA---GLAYAPTVDLPVHEP-EAEDPATARRAPGQGAMFELA-GPEPA
+PDAAALARELAAQQAAVAASAHPHRLRLLLAAESQGALVAAEMHHAGLPWRADVHEALLAEQLGPRPPEGARPARLQALG
+ERVAAALGSPGLNPDSPPALLRALQTAGVTVDSTRKWELTAWADQGGAQRQAREALIAPLLEYKALYRLWTAHGWHWLDT
+W-ARDGRFRPTYLVGGVVTGRWAAHGGGAMQVPSGVRDAVRADPGHVLTVADASQVEPRILAAMSRDAALAAAGATPDLY
+REVAEQGRSAGTALDDRSRAKVALLGAMYGATTGDSAALLPHLRRLYPAALAMLEAAAADGEAGRPVHTWLGRTSPAPAE
+RWLERVADRSTREAEARARSLRRSAGRFTRNFVVQGTAAEWALCWMGQIRGGLHRAGLSTALVFFVHDEVVLHGPAEEAG
+AVARIVTEAASQAGRLLFGAAPVDFPLTVAQVESYAQAK
+>SA211_MHAAABBN_01300
+MRAMFVVLGPAPASVGSPGTWWAL--------------DGEGDDAVPLGSCAAGSVAGLVAGLPARLGVDPSTVRWVLAD
+VGTEYAAWLAAGVRVDRCWDLALVQRILRHAATAPGSGVRYTPVAQLEVADPTEPERP--ARVPAGQESFFDLPDEADPA
+PDVTVLAAELAAQRAAVEGSAHPQRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQALA
+ERIADVLGSPGLSPDSQPSLLRALQTAGVAVESTRQWDLKHWIDAGGAEREARAALLAPLLEYKALARLWTANGWHWLDQ
+WIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQIPAGVRDAVRADSGWTLTVADASQVEPRILAAMAADQALARAGTTPDLY
+REVAEQGRAAGTALADRGRAKIALLGAMYGSTTGDSAALMPHLRRLYPRAIGLLERAASVGEGGGQVSTWLGRWSPAPGP
+TWQESVSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRMRSAGMRTELVFFVHDEVVLHGPATEAE
+AVRTVVAESASAAGRLLFGPAPVDFPLTVSSVGSYADAK
+>TT9_LFPAFLNI_01516
+---MFVVLGPAPASVGSPGAWWAL--------------DGEGDGASPLGSCAAGSVAGLVAGLPARLGVDPSTVRWVLAD
+VGTEYAAWLVAGVRVDRCWDLALVQRILRHAATAPGSGVRYTPVAQLEVADPTEPVRP--ARVPAGQESFFDLPDEAGPA
+PDVTVLAAELAAQRAAVEGSAHPHRLRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQTLA
+ERIADVLGSPGLSPDSQPSLLRALQTTGVAVESTRQWDLKHWIDAGGAEREARAALLAPLLEYKALARLWTANGWHWLDQ
+WIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPAGVRDAVRADPGWTLTVADASQVEPRILAAMAADEALARAGTTPDLY
+REVAEQGRAAGTALADRGRAKIALLGAMYGSTTGDSAALMPHLRRLYPRAIGLLERAASVGEGGGQVSTWLGRWSPAPGR
+KWQESVSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPATEAE
+AVRTVVAESASAAGRLLFGPAPVDFPLTVSSVGSYADAK
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000872.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000872.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f059092de2d9887dbbe37f0a4831ccb59cef72ef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000872.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01345
+MPAPEARVTVAVSTAVFGVRPDPSGAPRLHVALVPRMREPFLDRWALPGTWLAADEELAD
+AAARVAAETVPGPVRRLEQLAAFGAVDRSPTGRVLTVAHWALSPALDDDGAAPSHGGGLD
+VAGLPAGVHVRWQRADAPPAMAFDHAEILTAAVARLRADLPRAGVAHALLGPSFTLAELR
+AVHEAVLGRTLDAANFRRATLATGVLEETGEVRAGTRHRPPKLYRYRPADGA--PPPAAP
+DDPGDLS
+>KBS0714_MOLHKGIG_01578
+MPVAEARVSVAVSTAVFGVRPDPHGVPRLCVALVPRMREPFLDRWALPGAWLGADEELAD
+VAARVAAECVPGPVRRLEQLAAFGAVDRSPTGRVLTVAHWALSPVLDDDGAAPASRPDPD
+VAGLPIGVHVRWHRADAPPALAFDHAQILAAAVARLRADLPRAGVGHALLGPSFTLAELR
+AVHEAVLGRGLDAANFRRATLAAGTLEETGEVRGGTPHRPPKLYRYRPAGPGTDPDPAGP
+DAR---R
+>KD337_NAFOICDF_01238
+MPVAEARVSVAVSTAVFGVRPDAHGVPRLCVALVPRMREPFLDRWALPGAWLGADEELAD
+VAARVAAECVPGPVRRLEQLAAFGAVDRSPTGRVLTVAHWALSPTLDDDGAAPASRPDPD
+VAGLPIGVHVRWHRADAPPALAFDHAQILAAAVARLRADLPRAGVGHALLGPSFTLAELR
+AVHEAVLGRGLDAANFRRATLAAGTLEETGEVRDGTPHRPPKLYRYRPAGPGTDPNPAGP
+DAS---R
+>SA211_MHAAABBN_01288
+MPVAEARVSVAVSTAVFGVRPDPHGVPRLCVALVPRMREPFLDRWALPGAWLGADEELAD
+VAARVAAECVPGPVRRLEQLAAFGAVDRSPTGRVLTVAHWALSPALDDDGAAPASSPDPD
+VAGLPIGVHVRWHRADAPPALAFDHAQILAAAVARLRADLPRAGVGHALLGPSFTLAELR
+AVHEAVLGRGLDAANFRRATLAAGALEETGEVRGGTPHRPPKLYRYRPAGPGTDPDPAGP
+DAR---R
+>TT9_LFPAFLNI_01505
+MPVAEARVSVAVSTAVFGVRPDPHGVPRLCVALVPRMREPFLDRWALPGAWLGADEELAD
+VAARVAAECVPGPVRRLEQLAAFGAVDRSPTGRVLTVAHWALSPALDDDGAAPASSPDPD
+VAGLPIGVHVRWHRADAPPALAFDHAQILAAAVARLRADLPRAGVGHALLGPSFTLAELR
+AVHEAVLGRGLDAANFRRATLAAGTLEETGEVRGGTPHRPPKLYRYRPAGPGTDPDPAGP
+DAR---R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000874.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000874.fa
new file mode 100644
index 0000000000000000000000000000000000000000..315233162ef467a95b2ea92f34a9c69e64e429c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000874.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01348
+MSGLVALLDDVAALARLAAASVDDVAAGAAKASAKAAGVVVDDAAVTPQYMAGAAANREL
+PMIWRITKGSLRNKLLIILPALLLLDWLAPWVLPWLLLAGGTYLAYEGAHKVWGKLTGHS
+-PERDEPAVEKGPEAEDKVVRGAITTDFILSAEIMVISMNEVADVDFWLKAVILVVVAIL
+ITAVVYGAVALIVKMDDVGLHMTQNGRTAGGRRFGAGLVKAMPHVLTAITVIGTVAMLWV
+GGHIVLVELAALGVPWPYDVQHGIVHAV-EAAGGFVAWLVETLTSALWGLIWGSLALGVV
+LVVNRLRGKKDTLAH
+>KBS0714_MOLHKGIG_01576
+MVGLVALLDDVAALARLAAASVDDVAAGAGRAAAKAAGVVVDDAAVTPQYMAGAAAAREL
+PMIWRITKGSLRNKLVFILPALLLLDWLAPWILPWLLLAGGTYLSYEGAHKVWGKLTGHG
+HADDEEPAVERGPEAEDTVVRGAITTDFILSLEIMVISMNEVADLGFWMQAAVLAVVAVL
+ITVGVYGAVGLIVKMDDVGLHLHQNASTSGGRSFGAGLVKAMPHVLRVVTVIGTVAMLWV
+GGHIALVELDALGVPWPYAVQHGIVEPVTHAAGAFLGWLTETATSAVWGLLWGSVALGVV
+LLVGRLRGNKAAPAH
+>KD337_NAFOICDF_01241
+MSGLVALLDDVAALARLAAASVDDVAAGAAKASAKAAGVVVDDAAVTPQYMEGAAAQREL
+PMILRIVRGSLRNKLVFILPGLLLLDWLAPWALPWLLLAGGTYLSFEGAEKVWHKLTGHH
+EPQEDTPAVEQGPEAEDKVVRGAITTDFILSLEIMVISMNEVSDQGFWMKAAILAIVAVV
+ITVAVYGAVALIVKMDDVGLHMHENAHTSGARRFGLGLVKAMPVVMGVISVIGTVAMLWV
+GGHIVLMELATLGLPWLYELQHTIVHAV-EGAGSVIAWLVETLTSAIWGLVWGSLVVAVV
+GLVRRLRT-------
+>SA211_MHAAABBN_01286
+MVGLVALLDDVAALARLAAASVDDVAAGAGRAAAKAAGVVVDDAAVTPQYMAGAAAAREL
+PMIWRITKGSLRNKLVFILPALLLLDWLAPWILPWLLLAGGTYLSYEGAHKVWGKLTGHG
+HADDEEPAVERGPEAEETVVRGAITTDFILSLEIMVISMNEVADLGFWMQAAVLAVVAVL
+ITVGVYGAVGLIVKMDDVGLHLHQNASTSGGRSFGAGLVKAMPHVLRVVTVIGTVAMLWV
+GGHIALVELDALGVPWPYAVQHGIVEPVTHAAGAFLGWLTDTATSAVWGLLWGSVALGVV
+LLVGRLRGKKAAPAH
+>TT9_LFPAFLNI_01503
+MVGLVALLDDVAALARLAAASVDDVAAGAGRAAAKAAGVVVDDAAVTPQYMAGAAAAREL
+PMIWRITKGSLRNKLVFILPALLLLDWLAPWILPWLLLAGGTYLSYEGAHKVWGKLTGHG
+HADDEEPAVERGPEAEDTVVRGAITTDFILSLEIMVISMNEVADLGFWMQAAVLAVVAVL
+ITVGVYGAVGLIVKMDDVGLHLHQNASTSGGRSFGAGLVKAMPHVLRVVTVIGTVAMLWV
+GGHIALVELDALGVPWPYAVQHGIVEPVTHAAGAFLGWLTDTATSAVWGLLWGSVALGVV
+LLVGRLRGKKAAPAH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000875.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000875.fa
new file mode 100644
index 0000000000000000000000000000000000000000..34b9cc48a544e4682272e7aca2f1155a996b06eb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000875.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01349
+MT-----------GVT--------------AADGLDLSGMAAWLRHQADEEIVHANKFID
+HVTDRGS-------------------------------------------DAAGDLSSRP
+LLNWFLEEQIEGEAT---------------------------PPL-------
+>KBS0714_MOLHKGIG_01575
+MKLTDDLLQKFNDQITLEFEASMVYRQLAIAADDLDLSGMAAWLRHQADEEIVHANKFID
+HVADRDSFPTIGAIPAPPVQAGLSALEIFRAALAHEQKVSEAIRELYRATESAGDLNSRP
+LLNWFLDEQIEEEATVSEIVGQLELVGDDGSGLLRIDGRLGSRPVETTENDA
+>KD337_NAFOICDF_01242
+MSIDKDLTRKFNEQITLEFEASMVYRQLAIAADMQDLSGMAAWLRHQADEEIVHANKFID
+HVVDREASAVIGAIPAPDVPEHITPVQIFEAALAHERKVSEAIRELYRAAEAAGDLSSRP
+LLNWFLEEQIEEEATVGEIVGQLKLVGEDGSGLLRIDSALGARPVETTENAG
+>SA211_MHAAABBN_01285
+MKLTDDLLQKFNDQITLEFEASMVYRQLAIAADDLDLSGMAAWLRHQADEEIVHANKFID
+HVADRDSFPTIGAIPAPPVQAGLSALEIFRAALAHEQKVSEAIRELYRATESAGDLNSRP
+LLNWFLDEQIEEEATVSEIVGQLELVGDDGSGLLRIDGRLGSRPVETTENDA
+>TT9_LFPAFLNI_01502
+MKLTDDLLQKFNDQITLEFEASMVYRQLAIAADDLDLSGMASWLRHQADEEIVHANKFID
+HVADRDSFPTIGAIPAPPVQAGLSALEIFRAALAHEQKVSEAIRELYRATESAGDLNSRP
+LLNWFLDEQIEEEATVSEIVGQLELVGDDGSGLLRIDGRLGSRPVETTENDA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000877.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000877.fa
new file mode 100644
index 0000000000000000000000000000000000000000..eb82ee3b722bb2eafcbbcc82f5ae84fb9dade060
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000877.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01351
+M-------RTPMTSNVTDTALLFEGGGMRASLTSAVVAELLRERIHVDFVAGISAGSSNS
+VNYLARDPERARRSFVDFADDPRFGNWLSFVRGKGLFNAEYIYEHAGLPEADLPYDFATF
+QANPARLVLVGFDAVTGQTRWWDRSDMGTLADLMVRVRASSTMPVLMPPVHAEGTVFVDG
+ALGVDGGIPVTAAEEAGFEKLFVVMTRERSYVKRPERFPAFYQRTFRRYPAVAEALISRW
+RRYNETRERLFEMERQGRAYLFVPESMPVSNGERSVAKLAAAHELGLAQVRREMPAIREF
+LGL----
+>KBS0714_MOLHKGIG_01573
+M-------TEPMTSNVTDTALLFEGGGMRAALTSAVVAELLRERIHVDFVAGISAGSSNA
+VNYLSRDPARARRSFVDFADDPRFGNWLSFVRGKGLFNAEYIYEHAGLPEADLPYDFATF
+RANPARLVLGGFDAASGETRWWDRSDMTTLTDLMVRVRASSTMPVLMPPVHAEGTVFVDG
+ALGVDGGIPLTAAEDAGFEKVLVVLTRERGYVKRPERFPSFYQRTFRRYPAVADALLTRW
+RRYNATRERLFEMERQGRAYLFAPETMPIANGERSVAKLAAAHELGLDQVRREMPAIRAF
+LGLPASR
+>KD337_NAFOICDF_01244
+MAEQQDHTAEALTSNVTDTALLFEGGGMRASHTSAVVAELLRAGVHVDFVAGISAGSSNA
+VNYLARDPLRARQAFVDFADDPRFGNWRTFLRGKGMFNAEYIYEHAGLPEADLPYDFAAY
+RANPARLALAGFDAVTGETRWWGREDMTTLQDLMVRVRASSTMPILMPPVHLEDTVYVDG
+ALGVDGGIPVTAAEEAGLAKLLVVMTRERSYVKRPERFPAFYQRAFRRYPAVAEALVTRW
+QRYNATRERLFEMEREGTAYLFVPEVMPVSNGERSVAKLAAAHELGLAQARREMPAIKEF
+LGL----
+>SA211_MHAAABBN_01283
+M-------TEPMTSNVTDTALLFEGGGMRAALTSAVVAELLRERIHVDFVAGISAGSSNA
+VNYLSRDPARARRSFVDFADDPRFGNWLSFVRGKGLFNAEYIYEHAGLPEADLPYDFATF
+RANPARLVLGGFDAASGETRWWDRSDMTTLTDLMVRVRASSTMPVLMPPVHAEGTVFVDG
+ALGVDGGIPLTAAEDAGFEKVLVVLTRERGYVKRPERFPSFYQRTFRRYPAVADALLTRW
+RRYNATRERLFEMERQGRAYLFVPATMPISNGERSVAKLAAAHELGLDQVRREMPAIRAF
+LGLPASR
+>TT9_LFPAFLNI_01500
+M-------TEPMTSNVTDTALLFEGGGMRAALTSAVVAELLRERIHVDFVAGISAGSSNA
+VNYLSRDPARARRSFVDFADDPRFGNWLSFLRGKGLFNAEYIYEHAGLPEADLPYDFAAF
+RANPARLVLGGFDAASGETRWWDRSDMTTLTDLMVRVRASSTMPVLMPPVHAEGTVFVDG
+ALGVDGGIPLTAAEDAGFKKVLVVLTRERGYVKRPERFPSFYQRTFRRYPAVADALLTRW
+RRYNATRERLFEMERQGRAYLFAPETMPIANGERSVAKLAAAHELGLDQVRREMPAIRAF
+LGLPASR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000878.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000878.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8fb90574b6a628b0a7e9a6777fbb5c1ffd23ab32
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000878.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01352
+MATTHMKSTPVQTVGDLPEVGAPAPDFTLTGADLSPVTLQELRGRRVILNVFPSLDTGVC
+AASVREFNSRATDLEDTTVLAVSADLPFAAARFCSAEGIENVRSGSVFRSSFGDDYGVTM
+VDGPLEGLLARAVVVVDAEGVVRHAQLVPEITEEPDYEAALAAAQA
+>KBS0714_MOLHKGIG_01572
+MATTHMKSTPVHTVGELPQVGSPAPDFTLTGADLSPVTLRELRGRRVILNIFPSLDTGVC
+AASVREFDSRVADLGDTTVVAVSADLPFAAARFCSVEGIDHVRSGSVFRSSFGGDYGVRM
+TDGPLEGLLARAVVMVDADGVVRHAQLVPEISEEPDYEAALAAARG
+>KD337_NAFOICDF_01245
+MATTHFKGTSVHTVGELPEVGSAAPEFTLTGSDLSSVTLADLKGRTVVLNIFPSLDTGVC
+AASVRRFNQEAAGLEDTTVLAVSADLPFAAGRFCSAEGIENVVTGSVFRSDFGTAYGAEL
+ADGPMRGLLARAVVVVDAEGTVAYTELVPEITTEPDYEAALAVVRG
+>SA211_MHAAABBN_01282
+MATTHMKSTPVHTVGELPPVGAPAPDFTLTGADLSPVTLRELRGRRVILNIFPSLDTGVC
+AASVREFDSRVADLEDTTVVAVSADLPFAAARFCSVEGIDHVRSGSVFRSSFGDDYGVRM
+TDGPLEGLLARAVVVVDADGVVRHAQLVPEISEEPDYEAALAAARG
+>TT9_LFPAFLNI_01499
+MATTHMKSTPVHTVGGLPQVGAPAPDFTLTGADLSPVTLRELRGRRVILNIFPSLDTGVC
+AASVREFDSRVADLGDTTVVAVSADLPFAAARFCSVEGIDHVRSGSVFRSSFGDDYGVRM
+TDGPLEGLLARAVVVVDADGVVRHAQLVPEISEEPDYEAALAAARG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000880.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000880.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1a4b35a26e690b642ea8d84b0e5780542e90c355
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000880.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01354
+MDPLWIALALTAFAGLATVLGGVLAVVGKEPSGRGLGAALGLAAGVMIAVSFLEMLPVAV
+EGLAGAVGGAATALAVGALAVGTA-GYVLLERAVPVPAAGVPDDVDGPDGLSRLRLMRLG
+MVTALAIGLHNVPEGFVTFAGALQDPSVGVALAVAMAVHNVPEGIAVAVPVRRATGSRRK
+AFAWTAFTGLAEPVGALVGWLLLAPFLTPALVAVVFAAVTGVMITVSLDALLPAARAAGG
+RAATLAGVLLGVAAMAISLDLLG
+>KBS0714_MOLHKGIG_01570
+MDPFWTALALTTFAGLATVLGGVLAIVGREPSGRGLGAALGLAAGVMLAVSFLEMLPAAV
+EGLGGAVGPAATAVAVAALILGAG-SYVLLERAVPDPVSEMPGDVDDPAGLDRRRMLRLG
+TVTALAIGLHNLPEGFVTFAGTLQDPSVGLALAVAMAVHNVPEGVAVAVPVRQATGSRRK
+AFAWAAFTGIAEPLGALIGWLLLAPFLTPALLAAVFAAVAGVMVTVSLDALLPAARAAGG
+RAAALGGVLLGVAAMALSLDLLS
+>KD337_NAFOICDF_01247
+MEPFWTAVALTSLAGAATIVGGALGALGRPVSDRALAAALGLAAGVMLTVGAVEMGPAAA
+RGLATAVGDGPGVLAAGAAVGGGALAYLLIDRLLPEAATPSGSSA---SAAREARVGRLG
+VATALAIGAHNLPEGFVTFAGALEDSAVGLALAVAMAVHNVPEGIAVSVPVRRATGSART
+GFLWAATAGILEPAGALLGYWLLRPLLTDAVLGGVYGAVTGVMAALSLAALLPGAVRCGG
+VPTALAGAAAGAAAMLGSLSLLA
+>SA211_MHAAABBN_01280
+MDPFWTALALTTFAGLATVLGGVLAIVGREPSGRGLGAALGLSAGVMLAVSFLEMLPAAV
+EGLGGAVGPAATAVAVAALALGAG-AYVLLERAVPDPVSEMPGDVDDPAGLDRRRMLRLG
+TVTALAIGLHNLPEGFVTFAGTLQDPSVGLALAVAMAVHNVPEGVAVAVPVRQATGSRCK
+AFAWAAFTGIAEPLGALIGWLLLAPFLTPALVAAVFAAVAGVMVTVSLDALLPAARAAGG
+RGAALGGVLLGVAAMALSLDLLA
+>TT9_LFPAFLNI_01497
+MDPFWTALALTTFAGLATVLGGVLAIVGREPSGRGLGAALGLAAGVMLAVSFLEMLPASV
+EGLGGAVGPAATAVAVAALTLGAG-SYVLLERAVPDPVSEMPGDVDDPAGLDRRRMLRLG
+TVTALAIGLHNLPEGFVTFAGTLQDPSVGLALAVAMAVHNVPEGVAVAVPVRQATGSRRK
+AFAWAAFTGIAEPLGALIGWLLLAPFLTPALLAAVFAAVAGVMVTVSLDALLPAARAAGG
+RAAALGGVLLGVAAMALSLDLLS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000882.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000882.fa
new file mode 100644
index 0000000000000000000000000000000000000000..88d3dc1fe12f5153bcfdffb230f75bda50ef35ce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000882.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01359
+MLKFILKRLGSSLLVLFGASILLFFLVAHSGDPLQDLRESQNPNRETLIAARTEFMGLDQPWYARYWDWLQGIGGCVTGQ
+CDLGLSRNGQSVGDLLSSAAASTLRLVVLATVLAIIIGIAIGIVTAIRQYSGLDYVVTFLIFLFFSLPVFWAAVLLKEYM
+GIRFNDWIRSPELNWPLLIGVAVLAGLVLQAVMAGDLRRRAFTFGATAAFILLAGWVLFAVDFWRHPQMGPVVQLVIGLA
+AAVGATAVISGLRNRSVLKAALVTVAIGLVAYYATYGLLWRTPSALLLAGLGVILVLVAILVGRLLGGFSKGSAVSASLV
+TALIMGVAIVAEHLMNYWPTFLKVKPRPISTIGSGTPNLDAHFWVVFLDRGAQLLLPTILLTIISVATYSRYTRSSMLEV
+SRQDYIRTARAKGLSERQVILKHAFRNSLIPITTIMAFDFAGLIGGAVITEQVFGWKGMGELFATGLRDVDPMPVMAFFL
+VTGTAAVLMNLVADVLYAVLDPRIRV
+>KBS0714_MOLHKGIG_01567
+MLKFILKRLGSSLLVLFGASILLFFLVAHSGDPLQDLRESQNPNRETLIAARTAFMGLDQPWYARYWDWLQGIGGCVTGQ
+CDLGLSRNGQSVADLLSNAAASTLRLVVLATVLAIIIGIAIGIVTAIRQYSGLDYVVTFLIFLFFSLPVFWAAVLLKEYM
+GIRFNDWIRSPELNWPLLIGVAVLAGLVLQAVMAGDLRRRAFTFGATAAFILLAGWVLFAVDFWRHPQMGPVVQLVIGLA
+AAVGATAVISGLRNRSVLKAALVTVAIGLVAYYATYGLLWRTPSALLLAGLGVILVLVAILVGRLLGGFSKGSAVSASLV
+TALIMGVAIVAEHLMNYWPTFLKVKPRPISTIGSGTPNLDAHFWVVFLDRGAQLLLPTILLTIISVATYSRYTRSSMLEV
+SRQDYIRTARAKGLPERQVILKHAFRNSLIPITTIMAFDFAGLIGGAVITEQVFGWKGMGELFATGLRDVDPMPVMAFFL
+VTGTAAVLMNLVADVLYAVLDPRIRV
+>KD337_NAFOICDF_01250
+MLKFILRRLGSSALVLFGASILLYVLTVNSGDPLKDLRESQASNREQLMQARIDYMGLDDPWYERYWNWLTGVVKYLIGA
+GTLGTDRSGVQVESLLGNAAASTLRLVVLATVLAIVIGVAIGIITAIRQYSGLDYAVTFLIFLFFSLPVFWAAVLLKEYL
+AIGFNNWIARPTMDWPLVIGLAVVLGLALQAAMGGRLVRRLLTFAATVAVIVLGGYLLFALDMWRNPRMGPLVQLLIGLA
+VAVGGTALVAGLKNRSVLKAALATVAVGVVAYYATYGVLMQSPSGWLIAGLGVIAVLVGVLAGRLLGGFSKGSAVSVSVV
+TALVMGLSILAEHMMNYWPQLLKAKPRPIATIGAETPNLTGHFWVLFLDKGTQLLLPTVLLTIISVATYSRYTRSSMLEV
+SRQDYIRTARAKGLGERQVILKHAFRNSLIPITTIMAFDFAGLIGGAVITESVFGWKGMGELFRTGLDQVDPAPVMAFFL
+VTGTAAVLMNLVADILYAVLDPRIRV
+>SA211_MHAAABBN_01277
+MLKFILKRLGSSLLVLFGASILLFFLVAHSGDPLQDLRESQNPNRETLIAARTAFMGLDQPWYARYWDWLQGIGGCVTGQ
+CDLGLSRNGQSVADLLSNAAASTLRLVVLATVLAIIIGIAIGIVTAIRQYSGLDYVVTFLIFLFFSLPVFWAAVLLKEYM
+GIRFNDWIRSPELNWPLLIGVAVLAGLVLQAVMAGDLRRRAFTFGATAAFILLAGWVLFAVDFWRHPQMGPVVQLVIGLA
+AAVGATAVISGLRNRSVLKAALVTVAIGLVAYYATYGLLWRTPSALLLAGLGVILVLVAILVGRLLGGFSKGSAVSASLV
+TALIMGVAIVAEHLMNYWPTFLKVKPRPISTIGSGTPNLDAHFWVVFLDRGAQLLLPTILLTIISVATYSRYTRSSMLEV
+SRQDYIRTARAKGLPERQVILKHAFRNSLIPITTIMAFDFAGLIGGAVITEQVFGWKGMGELFATGLRDVDPMPVMAFFL
+VTGTAAVLMNLVADVLYAVLDPRIRV
+>TT9_LFPAFLNI_01494
+MLKFILKRLGSSLLVLFGASILLFFLVAHSGDPLQDLRESQNPNRETLIAARTEFMGLDQPWYARYWDWLQGIGGCVTGQ
+CDLGLSRNGQSVGDLLSNAAASTLRLVVLATVLAIIIGIAIGIITAIRQYSGLDYVVTFLIFLFFSLPVFWAAVLLKEYM
+GIRFNDWIRSPELNWPLLIGVAVLAGLVLQAVMAGDLRRRAFTFGATAAFILLAGWVLFAVDFWRHPQMGPVVQLVIGLA
+AAVGATAVISGLRNRSVLKAALVTAAIGLVAYYATYGLLWRTPSALLLAGLGVILVLVAILVGRLLGGFSKGSAVSASLV
+TALIMGVAIVAEHLMNYWPTFLKVKPRPISTIGSGTPNLDAHFWVVFLDRGAQLLLPTILLTIISVATYSRYTRSSMLEV
+SRQDYIRTARAKGLPERQVILKHAFRNSLIPITTIMAFDFAGLIGGAVITEQVFGWKGMGELFATGLRDVDPMPVMAFFL
+VTGTAAVLMNLVADVLYAVLDPRIRV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000883.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000883.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2ff427446d6f6a51632bed695f01b36e18a3d8cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000883.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01360
+MTTNNSSTTGAQLDEKQIFDLAEAEDAKLRVKAGKSYSQGALVRKRFFRHKAAMISLIVL
+VFITLMAFSSIGFAGIPGWWDKSYTAAASVVNGGRPTLSVVPQAFGGEGLRWGEHPFGQD
+TTGKDYFALVMRGTQQSMIIAAIVGLLSTVIGAIVGAVSGYFGGWVDSVLMRLTDLIIVI
+PLLVLAAVLGQMASGANMGILPLALVLGLVTWTSLARLVRGEVLSLREKEFVAAAVAMGA
+KPGRVIGKHLLPNTIGVIVVNATFAIAGAVLLETSLSFLGFGVKAPDSSLGLLISLYQNS
+FTTRPWLFWWPGMIILAIALSVNFLGDGLRDAFDPRQGAAAGRKRGLFSRRAAKTDAGAT
+TAGGLGTAPTARDGEA-------DDLIADP---DAPEH----RRGGAGGPAG-------G
+VGQ
+>KBS0714_MOLHKGIG_01566
+MTTNNSSMTGAQLDEKQIFDLAEAEDAKLRAKAGKSYSQGALVRKRFFRHRAAMISLIVL
+VFITLMAFSSIGFAGIPGWWDKSYTAAASVVNGGRPTLSVVPQAFGGEGLRWGEHPFGQD
+TTGKDYFALVMRGTQQSMIIAAIVGLLSTVIGAIVGAVSGYFGGWVDSLLMRLTDLIIVI
+PLLVLAAVLGQMASGMKMGILPLAVVLGLVSWTSLARLVRGEVLSLREKEFVAAAVAMGA
+KPGRLIFKHLLPNTIGVIVVNATFAIAGAVLLETSLSFLGFGVKAPDSSLGLLISDYQNA
+FTTRPWLFWWPGMIILAIALSVNFLGDGLRDAFDPRQGGGAHRRLRFFGRRAAATEAGAT
+TAGGLAAAPTAGRIEAPVEEAGGSARISDA---DEDGQ----R-----------------
+---
+>KD337_NAFOICDF_01251
+MTMSHSAQQNPRSTSPAVVDLAEAEDLKLQQKTGKSYSQGALIRMRFFRHKAAMVSLVVL
+AFIALMAFTSIGFAGIPGWWDESYSAASTVVDGGRPTLSVVPQFLGGEGLRWGAHPFGQT
+STGTDFFALVMRGTQQSLIIAFIVGLISTAIGALVGAASAYFGGWVDSVLMRLTDLIIVI
+PLLVLAAVLGKMAGGLQLGILPLAFVLGIVSWTSLARLVRGEILSLREKEFVAAAVAMGA
+KPGRIIGKHLLPNTIGVIVVNATFAIAGAVLLETSLSYLGFGVKSPDSSLGLLISDYQTA
+FTTRPWLFWWPGMTILAIALSVNFLGDGLRDAFDPRQSGSGRRKRGLFSRRAAVTEATPT
+TAGGLQASPASAPAGH-------ADVVTDSRGLDAPAAWTVTDADGTSRPAGDDVDTTEG
+DAR
+>SA211_MHAAABBN_01276
+MTTNNSSMTGAQLDEKQIFDLAEAEDAKLRAKAGKSYSQGALVRKRFFRHRAAMISLIVL
+VFITLMAFSSIGFAGIPGWWDKSYTAAASVVNGGRPTLSVVPQAFGGEGLRWGEHPFGQD
+TTGKDYFALVMRGTQQSMIIAAIVGLLSTVIGAIVGAVSGYFGGWVDSVLMRLTDLIIVI
+PLLVLAAVLGQMASGMKMGILPLAVVLGLVSWTSLARLVRGEVLSLREKEFVAAAVAMGA
+KPGRLIFKHLLPNTIGVIVVNATFAIAGAVLLETSLSFLGFGVKAPDSSLGLLISDYQNA
+FTTRPWLFWWPGMIILAIALSVNFLGDGLRDAFDPRQGAGAHRRPRFFGRRAAATEAGAT
+TAGGLAAAPTAGRIEAPVEAAGGSARISDA---DEDGQ----R-----------------
+---
+>TT9_LFPAFLNI_01493
+MTTNNSSTTGAQLDEKQIFDLAEAEDAKLRAKAGKSYSQGALVRKRFFRHKAAMISLIVL
+VFITLMAFSSIGFAGIPGWWDKSYTAAASVVNGGRPTLSVVPQAFGGEGLRWGEHPFGQD
+TTGKDYFALVMRGTQQSMIIAAIVGLLSTVIGAIVGAVSGYFGGWVDSVLMRLTDLIIVI
+PLLVLAAVLGQMASGMKMGILPLAVVLGLVSWTSLARLVRGEVLSLREKEFVAAAVAMGA
+KPGRLIFKHLLPNTIGVIVVNATFAIAGAVLLETSLSFLGFGVKAPDSSLGLLISDYQNA
+FTTRPWLFWWPGMIILAIALSVNFLGDGLRDAFDPRQGAGAHRRPRFFGRRAAATEAGAT
+TAGGLAAAPTAGRIEAPVEEAGGSARISDA---DEDGQ----R-----------------
+---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000885.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000885.fa
new file mode 100644
index 0000000000000000000000000000000000000000..feddcfaac34c038cea8eb68bfbc751cc1ebd632f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000885.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01362
+MTSTDTRRSDLRNVAIVAHVDHGKTTLVDAMLRQGGAFAAHGEVAERVMDSGDLEREKGITILAKNTTVFYSGPSAPEGQ
+TVTFNVIDTPGHADFGGEVERGLSMVDGVVLLVDSSEGPLPQTRFVLRKALAAKLPVILVVNKTDRPDARIDGVVSDSMD
+LLLGLASDLADEVEDLDLDSVLNLPVVFASGKAGRASLNQPEDGSLPDSEDLEPLFATMMEHIPAPAYTKGEVLQAHVTN
+LDASPFLGRLALLRIFNGTLKKGQQVAWARQDGTLKTVKITELLGTKGLSREPIEEAGPGEIVAVAGIEDIMIGETLTDV
+ENPKPLPLITVDDPAISMTVGINTSPLAGRVKGAKVTARQVKDRLDAELIGNVSLKVLPTERPDAWEVQGRGELALAILV
+EQMRREGFELTVGKPQVVTKTVDGKVHEPMELMTIDTPEEFMGAVTQLMAARKGRMQEMSNHGTGWIRMEFSVPARGLIG
+FRTQFLTDTRGAGIASSIANGYEPWAGTIEYRNNGSLVADRAGTATPFAMINLQERGSFFIQPGSEVYEGMIVGENSRAD
+DMDVNITKEKKLTNMRAASSDSFEGLTPPRQLTLEESLEFAREDECVEITPEDIRIRKVVLDANERLKAARARARA
+>KBS0714_MOLHKGIG_01564
+MTSTETRRSDLRNVAIVAHVDHGKTTLVDAMLRQTGAFNTHGDVAERVMDSGDLEKEKGITILAKNTTVFYSGPSAPEGE
+TVTINVIDTPGHADFGGEVERGLSMVDGVVLLVDSSEGPLPQTRFVLRKALAAKLPVILVVNKTDRPDARIDGVVSDSMD
+LLLGLASDLAEEDPDLDLDSVLDVPVVYASGKAGRASLTQPADGALPEAEDLEALFNVIMEHIPAPSYTEGEVLQAHVTN
+LDASPFLGRLALLRIFNGTLRKGQQVAWARQDGALKTVKITELLATKGLERVPAEEAGPGEIVAVAGIEDIMIGETLTDA
+ENPKPLPLITVDDPAISMTVGINTSPLAGRVKGAKVTARQVKDRLDKELIGNVSLKVLPTERPDAWEVQGRGELALAILV
+EQMRREGFELTVGKPQVVTRTVDGKVHEPMERMTIDIPEEFMGAVTQLMAARKGRMQEMSNHGTGWIRMEFLVPARGLIG
+FRTRFLTETRGAGIASSYAAGYEPWTGEIEYRTNGSLVADRAGSATPFAMINLQERGTFFVQPGAEVYEGMIVGENSRAD
+DMDVNITKEKKLTNMRAASSESFEGLTPPRRLTLEESLEFAREDECVEITPEDIRIRKVVLDANERLKAARARARA
+>KD337_NAFOICDF_01253
+MTSTDTRRSDLRNVAIVAHVDHGKTTLVDAMLRQTGAFNTHGDVAERVMDSGDLEKEKGITILAKNTTVFYSGPSAPEGE
+TVTINVIDTPGHADFGGEVERGLSMVDGVVLLVDASEGPLPQTRFVLRKALAAKLPVVLVVNKTDRPDARIDGVVSDSMD
+LLLGLASDLAEEDPELDLDSVLDVPVVYASGKAGRASREQPGDGALPDSEDLEPLFNVIMEHIPAPVYDESEVLQAHVTN
+LDASPFLGRLALVRIVNGTLKKGQTVAWARQDGQLKSVKITELLATKGLERVPADEAGAGEIVAVAGIEDIMIGETLTDL
+EDPKPLPLITVDDPAISMTVGINTSPLAGRVKGAKVTARQVKDRLDKELIGNVSLKVLPTERPDAWEVQGRGELALAILV
+EQMRREGFELTVGKPQVVTKQIDGKLHEPMERMTIDIPEEFMGAVTQLMAARKGRMQEMSNHGTGWIRMEFLVPARGLIG
+FRTRFLTDTRGAGIASSEAAGYEPWTGDIEYRTNGSLVADRAGTATPFAMINLQERGTFFIQPGAEVYEGMIVGENARAD
+DMDVNITKEKKLTNMRAASSESFEGLTPPRTLTLEESLEFAREDECVEITPEDIRIRKVVLDANERLKAARARARA
+>SA211_MHAAABBN_01274
+MTSTETRRSDLRNVAIVAHVDHGKTTMVDAMLRQTGAFNTHGDVAERVMDSGDLEKEKGITILAKNTTVFYSGPSAPEGE
+TVTINVIDTPGHADFGGEVERGLSMVDGVVLLVDSSEGPLPQTRFVLRKALAAKLPVILVVNKTDRPDARIDGVVSDSMD
+LLLGLASDLAEEDPDLDLDSVLDVPVVYASGKAGRASLTQPADGALPEAEDLEALFNVIMEHIPAPSYTEGEVLQAHVTN
+LDASPFLGRLALLRIFNGTLRKGQQVAWARQDGALKTVKITELLATKGLGRVPAEEAGPGEIVAVAGIEDIMIGETLTDA
+ENPKPLPLITVDDPAISMTVGINTSPLAGRVKGAKVTARQVKDRLDKELIGNVSLKVLPTERPDAWEVQGRGELALAILV
+EQMRREGFELTVGKPQVVTRTVDGKVHEPMERMTIDIPEEFMGAVTQLMAARKGRMQEMSNHGTGWIRMEFLVPARGLIG
+FRTRFLTETRGAGIASSYAAGYEPWTGEIEYRTNGSLVADRAGSATPFAMINLQERGTFFVQPGAEVYEGMIVGENSRAD
+DMDVNITKEKKLTNMRAASSESFEGLTPPRRLTLEESLEFAREDECVEITPEDIRIRKVVLDANERLKAARARARA
+>TT9_LFPAFLNI_01491
+MTSTETRRSDLRNVAIVAHVDHGKTTMVDAMLRQTGAFNTHGDVAERVMDSGDLEKEKGITILAKNTTVFYSGPSAPEGE
+TVTINVIDTPGHADFGGEVERGLSMVDGVVLLVDSSEGPLPQTRFVLRKALAAKLPVILVVNKTDRPDARIDGVVSDSMD
+LLLGLASDLAEEDPDLDLDSVLDVPVVYASGKAGRASLTQPADGALPEAEDLEALFNVIMEHIPAPSYTEGEVLQAHVTN
+LDASPFLGRLALLRIFNGTLRKGQQVAWARQDGALKTVKITELLATKGLERVPAEEAGPGEIVAVAGIEDIMIGETLTDA
+ENPKPLPLITVDDPAISMTVGINTSPLAGRVKGAKVTARQVKDRLDKELIGNVSLKVLPTERPDAWEVQGRGELALAILV
+EQMRREGFELTVGKPQVVTRTVDGKVHEPMERMTIDIPEEFMGAVTQLMAARKGRMQEMSNHGTGWIRMEFLVPARGLIG
+FRTRFLTETRGAGIASSYAAGYEPWTGEIEYRTNGSLVADRAGTATPFAMINLQERGTFFVQPGAEVYEGMIVGENSRAD
+DMDVNITKEKKLTNMRAASSESFEGLTPPRRLTLEESLEFAREDECVEITPEDIRIRKVVLDANERLKAARARARA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000888.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000888.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0faea1e4f5ee47e39a8de5b20ff41f96173c8f31
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000888.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01366
+MTQNESVRLTVGEQSLDLGVERATEGNNGINIAPLLKETGDVTYDPGFMNTANAKSAVTF
+IDGDEGILRYRGYAIEDLAANSSFMEVAYLLIYGELPESKETLEAWETNILRHNMVHEDL
+KLFFNGFPRDAHPMPVLSSSVSGLSTFYPDSLDPHDPEQVHISTVRLLGKLPVLASYAFK
+KSLGQPFMYPHNSLNYVENFLRLCFGVPAEEYEIDPDVVKALDLLLMLHADHEQNASTST
+VRLVGSTQANLFASVSAGINALYGPLHGGANEAVLNMLRTIQSDGIKPEDFMEKVKNKED
+GVRLMGFGHRVYKNYDPRAKIIKKTAEDILSKMGGNDELLEIAQRLEEKALADDYFVERK
+LYPNVDFYTGVIYKAMGFPEKMFTVLFALGRLPGWIAQWRELMEDPATKIGRPRQIYVGE
+PLRQYPQR
+>KBS0714_MOLHKGIG_01560
+MTHHESVRLTVGEQSLDLGVEHATEGNNGINIAPLLKETGDVTYDPGFMNTANAKSAVTF
+IDGDQGILRYRGYAIEDLAEHSSFMEVAYLLIYGELPESKETLEAWETNILRHNMVHEDL
+KLFFNGFPRDAHPMPVLSSSVSALSTFYPDSLDPHDQEQVHISTVRLLGKLPVLASYAFK
+KSLGQPFMYPHNSLNYVENFLRLCFGVPAEEYDIDPDVVKALDLLLMLHADHEQNASTST
+VRLVGSTQANLFASVSAGINALYGPLHGGANEAVLNMLRKIKSEGITPEDFMEKVKNKED
+GVRLMGFGHRVYKNYDPRAKIIKKTAEDILGKMGGNDELLEIAQRLEEKALADDYFVERK
+LYPNVDFYTGVIYKAMGFPEKMFTVLFALGRLPGWIAQWRELMEDPAAKIGRPRQIYVGE
+QLRQYPQR
+>KD337_NAFOICDF_01257
+MSEIESARLTVGEKTLDLGVEKAAEGNDGIVVAPLLKETGKVTYDPGFMNTANAKSAITY
+IDGDQGILRYRGYAIEDLAEHSSFMEVAYLLIYGELPESKEALEAWETNILRHNMVHEDL
+KMFFNGFPRDAHPMPVLSSSVSALSTFYADSLDPKDPEQVHISTVRLLGKLPVLASYAFK
+KSLGQPFMYPHNNLNYVENFLRLCFGVPAEEYEIDPDMVKALDLLLMLHADHEQNASTST
+VRLVGSTDANLFASVSAGINALYGPLHGGANEAVLNMLRRIQAEGIKPEDFMEKVKHKED
+GVRLMGFGHRVYKNYDPRAKIVKKTAEDILAKLGGNDELLEIAMRLEEKALADDYFVERR
+LYPNVDFYTGVIYKAMGFPEKMFTVLFALGRLPGWIAQWRELTEDPATKIGRPRQIYVGE
+QLRQYPQR
+>SA211_MHAAABBN_01270
+MTHHESVRLTVGEQSLDLGVEHATEGNNGINIAPLLKETGDVTYDPGFMNTANAKSAVTY
+IDGDQGILRYRGYAIEDLAEHSSFMEVAYLLIYGELPESKETLEAWETNILRHNMVHEDL
+KLFFNGFPRDAHPMPVLSSSVSALSTFYPDSLDPHDPEQVHISTVRLLGKLPVLASYAFK
+KSLGQPFMYPHNSLNYVENFLRLCFGVPAEEYDIDPDVVKALDLLLMLHADHEQNASTST
+VRLVGSTQANLFASVSAGINALYGPLHGGANEAVLNMLRKIKSEGITPEDFMEKVKNKED
+GVRLMGFGHRVYKNYDPRAKIIKKTAEDILGKMGGNDELLEIAQRLEEKALADDYFVERK
+LYPNVDFYTGVIYKAMGFPEKMFTVLFALGRLPGWIAQWRELMEDPATKIGRPRQIYVGE
+QLRQYPQR
+>TT9_LFPAFLNI_01487
+MTHHESVRLTVGEQSLDLGVEHATEGNNGINIAPLLKETGDVTYDPGFMNTANAKSAVTF
+IDGDQGILRYRGYAIEDLAEHSSFMEVAYLLIYGELPESKETLEAWETNILRHNMVHEDL
+KLFFNGFPRDAHPMPVLSSSVSGLSTFYPDSLDPHDPEQVHISTVRLLGKLPVLASYAFK
+KSLGQPFMYPHNSLNYVENFLRLCFGVPAEEYDIDPDVVKALDLLLMLHADHEQNASTST
+VRLVGSTQANLFASVSAGINALYGPLHGGANEAVLNMLRKIKSEGITPEDFMEKVKNKED
+GVRLMGFGHRVYKNYDPRAKIIKKTAEDILGKMGGNDELLEIAQRLEEKALADDYFVERK
+LYPNVDFYTGVIYKAMGFPEKMFTVLFALGRLPGWIAQWRELMEDPATKIGRPRQIYVGE
+QLRQYPQR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000889.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000889.fa
new file mode 100644
index 0000000000000000000000000000000000000000..653019a5010266289a271b761f8d4b241a1cbaa3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000889.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01367
+MTETAAQHPSARLVSGHGLATTAADGTVLDVWFPAPVAGPLADADATLAETLRSLAADDA
+DRGTTQSVVELEADLDAAPATAEDAWLRLHALSHRLVRPNELNLDGVFGLLANVVWTNFG
+PCAVEGFELTRARLRARGAVNVYGVDKFPRMTDYVVPTGVRIGDADRVRLGAHLAEGTTV
+MHEGFVNFNAGTLGHSMVEGRISAGVVVGDGSDLGGGVSIMGTLSGGGTQKVVIGEHVLL
+GANSGVGISIGDDCVVEAGLYVTAGALVTVVRPGEEPRTVKAVELSGVPNLLFRRNSATG
+VVEVLPRAGRTVELNAALHAN
+>KBS0714_MOLHKGIG_01558
+MTQTAAQQPSSRLVSGHGLATTAADGAVLDVWFPAPVAGPLSAADASLRDTLRALAADDA
+DRGTTQAVVELEVDLDAAPASTADAWLRLHALSHRLTRPNELNLDGVFGLLTNVVWTNHG
+PCAVADFELTRARLRARGAVQVYGVDKFPRMTDYVVPSGVRIGDADRVRLGAHLAEGTTV
+MHEGFVNFNAGTLGHSMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTQRIVIGEHVLL
+GANSGVGISVGDDCVVEAGLYVTAGTRVSVLQDGEAAHTVKAVDLSGVPNLLFRRNSTTG
+GVEALPRAGRTVELNAALHAN
+>KD337_NAFOICDF_01258
+MTDT-SQTSSARLVSGHGLATRAADGAVLDVWFPAPVTGPLASADASLAGTLEGLAAADA
+DRGTTQDIVALEADLDVAPASAEDAWLRLHALSHRLVRPNELNLDGVFGLLTNVVWTNFG
+PCAVEGFEATRAKLRARGAVNVYGVDKFPRMTDYVVPTGVRIGDADRVRLGAHLAEGTTV
+MHEGFVNFNAGTLGHSMVEGRISAGVVVGDGSDLGGGVSIMGTLSGGGTQKVVIGEHVLL
+GANSGVGISIGDDSVVEAGLYVTAGTVVTVVEPGRKPRTVKAVELSGVTNLLFRRNSVTG
+GVEVLPRDGRTVALNAELHAN
+>SA211_MHAAABBN_01268
+MTQTAAQQPSPRLVSGHGLATTAADGAVLDVWFPTPVAGPLSAADASLRDTLRALAADDA
+DRGTTQAVVELEVDLDAAPASTADAWLRLHALSHRLARPNELNLDGVFGLLTNVVWTNHG
+PCAVADFELTRARLRARGAVQVYGVDKFPRMTDYVVPSGVRIGDADRVRLGAHLAEGTTV
+MHEGFVNFNAGTLGHSMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTQRIVIGEHVLL
+GANSGVGISVGDDCVVEAGLYVTAGTRVSVLQDGEAARTVKAVDLSGVPNLLFRRNSTTG
+GVEALPRAGRTVELNAALHAN
+>TT9_LFPAFLNI_01485
+MTQTAAQQPSSRLVSGHGLATTAADGAVLDVWFPAPVAGPLSAADASLRDTLRALAADDA
+DRGTTQAVVELEVDLDAAPASTADAWLRLHALSHRLTRPNELNLDGVFGLLTNVVWTNHG
+PCAVADFELTRARLRARGAVQVYGVDKFPRMTDYVVPSGVRIGDADRVRLGAHLAEGTTV
+MHEGFVNFNAGTLGHSMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTQRIVIGEHVLL
+GANSGVGISVGDDCVVEAGLYVTAGTRVSVLQDGEAARTVKAVDLSGVPNLLFRRNSTTG
+GVEALPRAGRTVELNAALHAN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000896.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000896.fa
new file mode 100644
index 0000000000000000000000000000000000000000..457589732987842317680632b16cbf9bb30bb38f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000896.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01374
+-----------MSTPLWIAVIAALVVVVAALAAAAAGRLTLRAGEPAGQAPVHPVALPER
+PRADDVAFVRLAVAVPGYQRDQVDAVLLRLRDALADHEDEVAALRARLAELEADAARDAE
+RTGPR---
+>KBS0714_MOLHKGIG_01551
+MRAPLGGEGRRVSGPQWIVLVAVLVVVLAALAAALAGRLTLRADDPAGRTPGHPVLLPER
+PRAADVDLLRLAVAVPGYQRDQVDAVLLRLRDALAQCEDEVTALRARVAELE---AADPS
+RSDPAGRA
+>KD337_NAFOICDF_01265
+-----------MTQPIWIAVLVVAVVAVAALAAAALGRALPRPADPAGQAPPHPVLLPEH
+PRAADVDRLRLATAVPGYQRDQVDEVLARLRAALAADEERIAALEARLGEGDG-VGR---
+--------
+>SA211_MHAAABBN_01261
+MRAPLGGEGRRVSGPQGIVLVAVLVVVLAALAAALAGRLTLRADDPAGRTPGHPVLLPER
+PRAADVDLLRLAVAVPGYQRDQVDAVLLRLRDALAQREDEVTALRARVAELE---AADPS
+RSDPAGRA
+>TT9_LFPAFLNI_01478
+MRAPLGGEGRRVSGPQGIVLVAVLVVVLGALAASLAGRLTLRADDPAGRTPGHPVLLPER
+PRAADVDLLRLAVAVPGYQRDQVDAVLLRLRDALAQREDEAAALRARLAELE---AADPS
+RSDPAARA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000898.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000898.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7ac80b174cecd4f7807a28558ceb33942f5bc49b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000898.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01377
+---MGRGHTLRHLDAYLEDALPSASRRRIARHLDGCPDCRAAVRARARVLDAARTVHQRP
+AGVVASPVLRSRGISGRVVVGLLAFVVLVGGLLAAVWMAGAPRAGVARLAPSPTDAVGLV
+SGGSA--DGRAA-VAQLRGHGWTVPSLLGAGLEPLTVDAAQTPRDVEVVVGWGLQEPTVT
+VRECRPRIAGAAPEGCASAAPLPEDAQERTLTGGDVYRIQPAEADGAWTAELTTAQAAYR
+VEARLPDERADAVLTHLLVSERSRVRELGGPDAVEERLERGIERIVESVPRVRD------
+-----
+>KBS0714_MOLHKGIG_01548
+---MGRRHTQRHMDAYLEGSLPAASRARIARHLDRCPECRATVQARARVLDAARTVHQRP
+AGAVVAPVLRARGVSGRLVVGLLTFVVLLGGLFTAVWVAGAPRTAAVRTAPTPTDTVALP
+AAGTASTDRRGT-VAELRGQGWTVPSLVGAGLEPLTVDTAQTAEDVEVVVGWGRDEPTVT
+VRECRPRIVGATPKGCASTAPLSTGVQERRLAGGGVYRIVPAGEQDGWTAELTTPQAAYR
+VEASLPDERADAVLTHLLVSERARVLELGGGDAVEERLERGLERIADAVPRPRG------
+-----
+>KD337_NAFOICDF_01268
+MGVLARGHCLPVLDSYLEGVLAPRASRRVEAHLSRCPDCRAVAGQRARVLDAARSVDARP
+A---AGAVMRPRGVSGRAVVCGLLVLVVLAGLVAAVWMLGGPASTAAPADVDPVRAVSAP
+VSASADEDDVATRVDELRGQGWALPSLSASGMRPLSVHADRVGEAAEVSVAWGRTSPVVT
+VRECRGADADERTRCARQGGVGVSGASEARLPVGMDYRIAD-HADGGWEAWLSTSDAVYR
+VDASVPRSQAEALLSQLVVVERSGLAPPRRDEDPRDRLERGLDRLLDG--RVGGAAVRNP
+AAGAR
+>SA211_MHAAABBN_01258
+---MGRRHTQRHMDAYLEGSLPAASRARIARHLDRCPECRATVQARARVLDAARTVHQRP
+AGAVVAPVLRARGVSGRLVVGLLTFVVLLGGLFTAVWVAGAPRTAAVRTAPTPTDTVALP
+AAGTASTDRRGT-VAELRGQGWTVPSLVGAGLEPLTVDTAQTAEDVEVVVGWGRDEPTVT
+VRECRPRIVGATPKGCASTAPLSTGVQERRLAGGGVYRIVPAGEQDGWTAELTTPQASYR
+VEASLPDERADAVLTHLLVSERARVLELGGGDAVEERLERGLERIADAVPRPRG------
+-----
+>TT9_LFPAFLNI_01475
+---MGRRHTQRHMDAYLEGSLPAASRARIARHLDRCPECRATVQARARVLDAARTVHQRP
+AGAVVAPVLRARGVSGRLVVGLLTFVVLLGGLFTAVWVAGAPRTAALRTAPTPTDTVALP
+AAGTASTDRRGT-VAELRGQGWTVPSLVGAGLEPLTVDTAQTAEDVEVVVGWGRDEPTVT
+VRECRPRIVGAAPEGCASTAPLSTGAQERRLAGGGVYRIVPAGEQDGWTAELTTPQAAYR
+VEASLPDERADAVLTHLLVSERARVLELGGGDAVEERLERGLERIADAVPRPRG------
+-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000901.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000901.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0c9c07b9484aaf98b6b067b060e502888923caed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000901.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01380
+MSQTSRDARPSRGTGLDTPLSASGRRVPRLAPNPDAFGEATEGIARFMGTPQFLVWMTLF
+CAAWLGWNTFGPEDLRFDSAALGFTALTLMLSLQASYAAPLLLLAQNRQDDRDKVALRED
+RDRAERNLADTEFLTREISGLRLAVQEVATRDFVRGELRGVQEDLRDELREALRAELREE
+IRAELRAELAEGRRERTDPGAEPRPRKQKKHKGRDRGRDERRAGDDGVDPSTTTLAVIAA
+REAAQAAQSAQAGQDAGPEAGRAVDGRDDADGAAR
+>KBS0714_MOLHKGIG_01545
+MTQTARDLRPGRGTGLDTPLSASGRRVPRLAPNPDAFGEATEGIARFMGTPQFLVWMTLF
+CAAWLGWNTFGPMEWRFDSAELGFTALTLMLSLQASYAAPLLLLAQNRQDDRDRVALRED
+RDRAERNLADTEFLTREIAGLRLAVQEVATRDFVRGELRGVQDDLRDDLREALRAELREE
+IREEIREELRAGL-----PGAEAQPRKNKKTKG--RGRDARR-GDAGAEPTTTTLATLA-
+--AQEAREAGGSGPAAGPADGAG-----PVDGGGR
+>KD337_NAFOICDF_01271
+MPQSPRDPRDTRATGLDTPMRARERVMPRLTPNPDAFGEWTEGIARFMGTPQFLLWMTLF
+CLVWVGWNSYAPEPWRFDSAALGFTALTLMLSLQASYAAPLLLLAQNRQDDRDKVALRED
+RDRAERNLADTEFLTREISGLRIALQDMATRDYVRGELRAMNEDLVAALREVVREEVREE
+LRAE-----EAG------PAVAPKPKEKSKKKS--SRREPGR--PDGTEAHTTTLAIIAA
+QEAA---DQGGAAPDAAHAADDA-----GQDAP--
+>SA211_MHAAABBN_01255
+MTQTARDLRPGRGTGLDTPLSASGRRVPRLAPNPDAFGEATEGIARFMGTPQFLVWMTLF
+CAAWLGWNTFGPMEWRFDSAELGFTALTLMLSLQASYAAPLLLLAQNRQDDRDRVALRED
+RDRAERNLADTEFLTREIAGLRLAVQEVATRDFVRGELRGVQDDLRDDLREALRAELREE
+IREEIREELRAGL-----PGAEAQPRKNKKTKG--RGRDARR-GDAGAEPTTTTLATLA-
+--AQEAREAGGSGPAAGPADGAG-----PVDGGGR
+>TT9_LFPAFLNI_01472
+MTQTARYLRPGRGTGLDTPLSASGRRVPRLAPNPDAFGEATEGIARFMGTPQFLVWMTLF
+CAAWLGWNTFGPMAWRFDSAELGFTALTLMLSLQASYAAPLLLLAQNRQDDRDKVALRED
+RDRAERNLADTEFLTREIAGLRLAVQEVATRDFVRGELRGVQDDLRDDLREALRAELREE
+IREEIREELRAGL-----PGAEAQPRKNKKTKG--RGRDARR-GDAGAEPTTTTLATLAA
+QEAQEAREAGGSGPVTGPAGGAG-----PVDGGGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000903.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000903.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1b8d73166859684c30bf65e94fee5765e08bd5ce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000903.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01382
+MSFMMSSPPPGADRGLPRGELLATYASYADAREQVDRLAATDFPVSAVSIVGKDLRVVER
+VRGRLNYAQVALSAGVRGVFFGGLIGVFLFLLTPEGGAGQILTSMLLGLAVWLIFGVIGF
+GMRKGRHGFASSQAVVPTGYDLVVAFEHAARARTELGLGGAAATAAAAVSTSPATPAPAA
+PQA----GPNQNGAGQVDAPRP-DAPQADAQHAPQAGAPSSGGSHAAPDADAQPAGAEAA
+PAAG--AVPTGLDRSYGVTLPPEEVAKLIQARGGQASRPQEDPRD----------
+>KBS0714_MOLHKGIG_01543
+MSIMMPNPQPGAEQGLPRGELLATYATYAQAREQVDRLAATDFPVSAVSIVGKDLRVVER
+VRGRLNYAQVALSAGVRGVFFGGLIGVFLYLLAPEAGPGQILTSMLLGLAVWLIFGVIGF
+AMRRGQHGFASSQAVVPTAFDLVVAFDHAARARQELGLGGAAA----------PTPPA-A
+SQP----AP---------APAA-EAEDGSVQATP-APAPSSGGSHAAPAPGGPEAPARPA
+PEAD--PAPTGLDRSYGVTLPPEEVAKLIEARGGHPPRPQDEPRG----------
+>KD337_NAFOICDF_01273
+--MMMSGPAAG---GLPQGELLATYSTYEQAREQVDRLAEADFPVTALSIVGKDLRVVER
+VRGRLNYGRVALGAAVQGALFGAMIGAFLLLLDSSAGGMQIVTSALLGVAVWVIFGVVGF
+ASRKGRHGFASTQALVPGGYDLVVAFEHAGRARQELGLGARGA----------ATPAP-A
+PMPVQESAP---------APAPAPAPSGSAVSGP-S------GSHAAPASSAEPAPAHVD
+GPAQDPAAPAGLDRSYGVTLPPEEVARLIEARGGRPRQDPQAPQGQPHPWDRPQS
+>SA211_MHAAABBN_01253
+MSFMMSNPQPGAEQGLPRGELLATYATYAQAREQVDRLAATDFPVSAVSIVGKDLRVVER
+VRGRLNYAQVALSAGVRGVFFGGLIGVFLYLLAPEAGPGQILTSMLLGLAVWLIFGVIGF
+AMRRGQHGFASSQAVVPTAFDLVVAFDHAARARQELGLGGAAA----------PTPQP-A
+PQP----AP---------APAAEEAGGGSVQATP-AAAPSSGGSHAAPAPGGPEASARPT
+PEAD--TAPTGLDRSYGVTLPPEEVAKLIEARGGHPPRPQDEPRG----------
+>TT9_LFPAFLNI_01470
+MSIMMPNPQPGAEQGLPRGELLATYATYAQARDQVDRLAATDFPVSAVSIVGKDLRVVER
+VRGRLNYAQVALSAGVRGVFFGGLIGVFLYLLAPEAGPGQILTSMLLGLAVWLIFGVIGF
+AMRRGQHGFASSQAVVPTAFDLVVAFDHAARARQELGLGGAAA----------PTPPA-A
+SQP----AP---------APAA-EAEDGSVQATP-APAPSSGGSHAAPAPGGPEAPARPA
+PEAD--PAPTGLDRSYGVTLPPEEVAKLIEARGGHPPRPQDEPRG----------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000904.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000904.fa
new file mode 100644
index 0000000000000000000000000000000000000000..42038b19d5144e456d1987a7ea9ca688c6e8bee1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000904.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01383
+MD------------------------IDLTTELTALRDRLLSAEAEHADLISRVRDRHRASARNLVHYVALRGTDLRPLQ
+DALSDVGLSSLGRMEAGVLGHVDAVLAAARALDGEDAPSP-DDDALTPARGREILARDADRLLGPARPDRAARIMVTLPS
+EAAQDPDLVARMAEAGMDLARVNCAHDDEAAWAAMIEAVRACA-TPERPAPLVAMDLAGPKVRTGPIEPGPRVVKVKPAR
+TPAGLVTEPSRVWLAAA-----GAADAPAGAVVVPVTEAG---AEVLAGLAAGDEVELTDARGSHHVLTVEQAGAAGALV
+RADKTVYWGTGLAVDTPRGTLTVGELAPLEQSMRVRRRDQVVLTRSLDPVPAASAPPYRIGLTLAQAFEDVAVGDRVSID
+DGKIDAVVRAANADEITLEVTEAGPNGTKLKAEKGVNFPDTALSIPALTDEDLAHIPFVARHADMVNLSFVRSAEDVAQL
+IDALAAEDATDVDITLKIETVGAFEQLPRMLLEAMRWRDVGVMIARGDLAVEAGFERMAELQEEILWLCEAAHVPAIWAT
+QILESLAKTGLPSRAEITDAAMAQRAEAAMLNKGPYIEEAITALGDILGRMGGHARKKRDMLRRLESWSL
+>KBS0714_MOLHKGIG_01542
+MG------------------------IDLTTELTALRDRLLSAEAEHADLISRVRDRHRASARNLVHYVALRGTDLRPLQ
+EALSDAGLSSLGRMEAGVLGHVDAVLAAARALDGDLATAP-EDDALTSAEGRAILARNAASLLGPARGDRDARIMVTMPS
+EAATDPELVARIAEAGMDLARVNCAHDDEQAWAAMIAAVRRCA-GAGRPAPLVAMDLAGPKVRTGPIEPGPRVVKVKPAR
+DPSGIVTEPSRVWLAAGPHDAVAVADRPDGAVVVPLAAPD---GKTLAGLQRGDEIELTDARGAHRRLEVERVSGEGVLV
+RADKTVYWATGTALTTPHGPLEVGPLPPLEQSMRVHEGEQIVLTRSLEPVPAVDTPPYRIGLTLAQAFADATVGDRVSLD
+DGRIGTRITGVSDDEITLEVTQAGPRGAKLKAEKGVNFPDTHLDIPALTDEDLAHIPFAARHADMVNMSFVRSAEDVAQL
+IDALEAEDAPDVDITLKIETVEAFRQLPRMLLEAMRWRDVGVMIARGDLAVEAGFARMAELQEEILWLCEAAHVPAIWAT
+QVLESLAKTGLPSRAEITDAAMAQRAEAAMLNKGPYIDRAVTVLGDILGRMHGHASKKRDMLRRLESWSL
+>KD337_NAFOICDF_01274
+MSTLPENAPDSRPTAESPVVAPGAAVTELIEAIDALRARIVAAEQAHAERLDRVADRHRASARNLVHYVTLRGEDLRPLQ
+DALSAVGLSSLGRMEAGVLGHLDAVRTALHPLGGRPAPDPADDDPLSPAEGRALLAANAESLLGPSRPGRETRIMVTMPS
+EAATNAALVQGMADAGMDLARVNAAHDGEAAWAAMVANIRGVARDGGRPAPRICMDLAGPKLRTGPLEPGPGVVKVKPRR
+DVDGTVLERSRVWLGEA--DAPEAAD----AVVLPLDPAGSGHSPVLSALRPGDHAMLTDARDSDRTLHVLAATEAGVLL
+ACRKTVYWHTGLEVDTPRGTLVVGALPSVPQAMRVHAGDEIVLTRSMDPRPAVSEGPFTIGCSLPQAFQDVRPGERVLID
+DGKITGEVVSNDGEAITLTVTEAGPTGAKLRAEKGVNFPDTDLRLPALTDEDRSHLPFAAAHADVVNMSFVRSPADVAAL
+IDALDAEDARGVGVSLKIETVGAFERLPAMLLEAMRWNDVGVMIARGDLAVEAGFERMAELQEEILWLCEAAHVPAVWAT
+QILETLAKQGLPSRAEITDAAMAQRAEAAMLNKGPYIDEAIGALSDILTRMGGHADKKRDMLRRLRSWSL
+>SA211_MHAAABBN_01252
+MG------------------------IDLTTELTALRDRLLSAEAEHADLISRVRERHRASARNLVHYVALRGTDLRPLQ
+EALSDAGLSSLGRMEAGVLGHVDAVLAAARALDGDPAPAP-EDDALTSAEGRAILARNAASLLGPARGDRDARIMVTMPS
+EAATDPELVARIAEAGMDLARVNCAHDDEQAWAAMIAAVRRCA-GAGLPAPLVAMDLAGPKVRTGPIEPGPRVVKVKPAR
+DPSGIVTEPSRVWLAAGPHDAVATADRPDGAVVVPLADPE---GTTLAVLQRGDEIELTDARGAHRRLEVEQVDGEGVLV
+RAEKTVYWATGTALTTPHGPLEVGPLPPLEQSMRVHEGEEIVLARSLEPVPAVDTPPYRIGLTLAQAFADAAVGDRVSLD
+DGRIGARITAVSADEITLEVTQAGPRGAKLKAEKGVNFPDTHLAIPALTDEDLAHIPFAARHADMVNMSFVRSAEDVAQL
+IDALEAEDAPDVDITLKIETVEAFRQLPRMLLEAMRWRDVGVMIARGDLAVEAGFARMAELQEEILWLCEAAHVPAIWAT
+QVLESLAKTGLPSRAEITDAAMAQRAEAAMLNKGPYIDRAVTVLGDILGRMHGHASKKRDMLRRLESWSL
+>TT9_LFPAFLNI_01469
+MG------------------------IDLTTELTALRDRLLSAEAEHADLISRVRERHRASARNLVHYVALRGTDLRPLQ
+EALSDAGLSSLGRMEAGVLGHVDAVLAAARALDGDPAPAP-EDDALTSAEGRAILARNAASLLGPARGDRDARIMVTMPS
+EAATDPELVARIAEAGMDLARVNCAHDDEQAWAAMIAAVRRCA-GAGRPAPLVAMDLAGPKVRTGPIEPGPRVVKVKPTR
+DPSGTVTEPSRVWLAAGPHDAVAAADRPDGAVVVPLADPE---GTTLAVLQRGDEIELTDARGAHRRLEVEQVDGEGVLV
+RAEKTVYWATGTALTTPHGPLEVGPLPPLEQSMRVHEGEQIVLTRSLEPVPAVDTPPYRIGLTLAQAFADATVGDRVSLD
+DGRIGTRITGVSDDEITLEVTQAGPRGAKLKAEKGVNFPDTHLDIPALTDEDLAHIPFAARHADMVNMSFVRSAEDVAQL
+IDALEAEDAPDVDITLKIETVEAFRQLPRMLLEAMRWRDVGVMIARGDLAVEAGFARMAELQEEILWLCEAAHVPAIWAT
+QVLESLAKTGLPSRAEITDAAMAQRAEAAMLNKGPYIDRAVTVLGDILGRMHGHASKKRDMLRRLESWSL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000905.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000905.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0ed635a2e3662c917f9981b6be32f5b0cb2a6a94
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000905.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01384
+----MTDAAQHPAQHADQDRPQDPAATPEAGVDAEGAVSPQPLAQRVENRSQRPSSDAFRAFMGADWAPSSDELPAQDAS
+APHAARRRAAVSARYPGERIVVPAGRLKVRSNDTDYRFRAHSAFAHLTGLGVDHEPDAVLVLEPTDPGAGDGGSDHAATL
+YFRPLAGRDTEQFYADARAGEFWIGPRPTLAGLAARTGLRTAGLEELESAVTKNVCADGTAVRLLREADQDMDALLAGVR
+AEAGMDAEAAASADAQVAEFLSELRLVKDAWEVERMRASVAATIAGFEDVVRALPRAVGHDRGERVVEGAFFARARLEGN
+DLGYDTIAASGNNATILHWIRNTGTVREGDLLLLDAGVEDDSLYTADITRTLPVSGSFTDVQRRIYQAVLDSADAAYAIV
+RPGIRFREIHAEAMRVLVERLADWGLLPVSAEVALSEDGQHHRRWMPHGTSHHLGLDVHDCAQAKRELYLDGVLEPGMVF
+TIEPGLYFKEEDLAVPEEYRGIGVRIEDDILVTEDGAENLSAALPRTPDEIEAWMARLQA
+>KBS0714_MOLHKGIG_01541
+----MTDAAQHPAQTT----PDQPAATPEAGADGTGAVNPQPLAERVDNRSQRPASNAFRDFMASDWAPSSQALPDPDAS
+APYAARRRAAVSARFPGERIVVPAGRLKVRSNDTDYRFRAHSAFAHLTGLGVDHEPDAVLVLEPTDPGAGDDGTDHTATL
+YFRPLAGRDTEQFYADSRSGEFWIGPRPTLAGLAARTGLRTAGLEELESAVTKNVAADGTAVRLLAETDQDVDALLAAVR
+TEAGVDLAAAAEADAQTAEFLSELRLVKDAWEVDRMRASVAATIAGFEDVVRALPRAVGHDRGERVVEGAFFARARLEGN
+DLGYDTIAASGNNATILHWIRNTGAVRPGELLLLDAGVEDDSLYTADITRTLPVSGTFTDVQRRIYQAVLDAADAAFAIV
+RPGIRFRELHAEAMRVLVDRLDGWGLLPVSAEVALSDEGQHHRRWMPHGTSHHLGLDVHDCAQAKRELYLDGVLEPGMVF
+TIEPGLYFKEEDLAVPEEYRGIGVRIEDDILVTEDGAENLSAALPRTPDEIEAWMARLQA
+>KD337_NAFOICDF_01275
+----MTDASA----------QQNDDLAPEAAADSGAALSPQPLAERVENRSQKPTSDAFRAFMASQWAPASRELPGPDAS
+APFAARRRAAVSAMFPGERIVVPAGRPKVRSNDTDYRFRAHSAFAHLTGLGVDHEPDAVLVLEPTDAGAGDAGTDHAATL
+YFRPLAGRDTEQFYSDPRAGEFWIGPRPTLAELAARTGLRTAGLEELENAVTKDVAA--TAVRLLREADQDMDAVVAAAR
+ADAGVDAQAAGAADAALAEALSELRLVKDEWEVERMRASVASTIAGFEDVVRALPRAVGHARGERVVEGAFFARAREEGN
+DLGYDTIAASGNNATVLHWIRNTGRVREGELILVDAGVEDDSLYTADITRTLPVSGTYSDVQRRVYQAVLDAADAAFALV
+KPGIRFREIHAEAMRVLAGRLHGWGLLPVSPEEALSEAGQHHRRWMPHGTSHHLGLDVHDCAQARRELYLDAVLEPGMVF
+TIEPGLYFKAEDLAIPEEYRGIGVRIEDDILVTEDGAENLSAALPRTPEDVEAWMARLQG
+>SA211_MHAAABBN_01251
+----MTDAAQHPAQTT----PDQPAATPEAGADGTGAVNPQPLAERVDNRSQRPASNAFRDFMASDWAPSSQALPDPDAS
+APYAARRRAAVSARFPGERIVVPAGRLKVRSNDTDYRFRAHSAFAHLTGLGVDHEPDAVLVLEPTDPGAGDDGTDHTATL
+YFRPLAGRDTEQFYADSRSGEFWIGPRPTLAGLAARTGLRTAGLEELESAVTKNVAADGTAVRLLAETDQDVDALLAAVR
+TEAGVDLAAAAEADAQTAEFLSELRLVKDAWEIERMRASVAATIAGFEDVVRALPRAVGHDRGERVVEGAFFARARLEGN
+DLGYDTIAASGNNATILHWIRNTGAVRPGELLLLDAGVEDDSLYTADITRTLPVSGTFTDVQRRIYQAVLDAADAAFAIV
+RPGIRFRELHAEAMRVLVDRLDGWGLLPVSAEVALSDEGQHHRRWMPHGTSHHLGLDVHDCAQAKRELYLDGVLEPGMVF
+TIEPGLYFKEEDLAVPEEYRGIGVRIEDDILVTEDGAENLSAVLPRTPDEIEAWMARLQA
+>TT9_LFPAFLNI_01468
+MMGGMTDAAQHPAQTA----PDQPAATPEAGADGTGAVNPQPLAERVDNRSQRPASNAFRDFMASDWAPSSDALPDADAS
+APYAARRRAAVSARFPGERIVVPAGRLKVRSNDTDYRFRAHSAFAHLTGLGVDHEPDAVLVLEPADPGTGDDGTDHTATL
+YFRPLAGRDTEQFYADSRSGEFWIGPRPTLAGLAARTGLRTAGLEELESAVTKNVAADGTAVRLLAETDQDVDALLAAVR
+TEAGVDLTAAAEADAQTAEFLSELRLVKDAWEVERMRASVAATIAGFEDVVRALPRAVGHDRGERVVEGAFFARARLEGN
+DLGYDTIAASGNNATILHWIRNTGAVRPGELLLLDAGVEDDSLYTADITRTLPVSGTFTDVQRRIYQAVLDAADAAFAIV
+RPGIRFRELHAEAMRVLVDRLDGWGLLPVSAEVALSDEGQHHRRWMPHGTSHHLGLDVHDCAQAKRELYLDGVLEPGMVF
+TIEPGLYFKEEDLAVPEEYRGIGVRIEDDILVNEDGAENLSAALPRTPDEIEAWMARLQA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000907.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000907.fa
new file mode 100644
index 0000000000000000000000000000000000000000..91ad9a78b9ddb8c14f41b2e7eb22b198cc2eb247
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000907.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01387
+MPHRAVALRGRPDPALIERLAALRTELELPAGFPPEVLEEADAAARDVLAALASDPAYADRTDVPFVTVDPAGSTDLDQA
+LYLEAADG-DAITVRYAIADVPAFVAPGGAVDVEARRRGQTVYLPDGRVPLHPEALSEDAASLLPDRERPAFVWTFVLDA
+AGAVVDTSLERARIRSRAQLTYAQVQAFLDALPDAKAPAAPRPGLDEADHAAHRGWDAPLRDSLALLPEVGRRRAAQEAA
+RGGASLNLPDQEVHVAEDGRHCLVQRAPLPAEDHNAQLSLMTGMAAARLMLEAGVGILRTMPAPDAEAVAAFRSRTRALG
+APWEEGQDYGAYLRTLDPADPGHLAVLHEATSLFRGAGYTAFDAHAEDPELRTPPSEPEQAALAAPYAHATAPLRRLVDR
+FVLALCHAHATGAPAPEWARAALPEVPALMTESSRRTSAADRAATDLVEAAALQDHVCAELEGIAVRRVKGGAEVWLLDP
+AVTLRVPGEAEPGTRVRVRIEGVDRASGEVTASGVDWPHSSR
+>KBS0714_MOLHKGIG_01538
+MTPHALGLRGPADPTLLERLAALRTELELPPAFPAPVLAEAEAAAREVHAGLTGSPDHADRTALPFVTVDPAGSTDLDQA
+LLLTPADD-DGILVRYAIADVPAFVTPGGAVDGEARRRGQTVYLPDGRVPLHPEVLSEDAASLLPDREHPAFVWTFLLDA
+AGAVVETGLERARIRSRAQLTYGQVQAFLDAQPGAQAPTTPRPGVTDADRAAAEGWPAEVRDSLALLPEVGRRRAAQEAA
+RGGASLNLPDQEVRVTEDGAHELVHRAPLPAEEHNAQLSLLTGMAAAELMLAAGVGILRTMPAPDTDAVAAFRERTRALG
+APWDEGQDYGAYLRSLDPADARHLAVLHAATGLFRGAGYTAFDAQAEDPALRTPPDEPAQAALAAPYAHATAPLRRLVDR
+FVLALCHAHAIGAPAPAWVRSALPALPALMADSSRRASAASRTAADLVEAAALESRVGAELEGIAVREAKDGTEVWLLDP
+AVSLRVPGSVPAGTRVRVRIEGVDRASGAITAAGVDWPHSSR
+>KD337_NAFOICDF_01278
+MPHHALEVRGGPDAALAARLRALRAELDVPGEFPADVLTEAERAAAEVPGRVAADPDRADLTAVPFVTVDPAGSTDLDQA
+LHLQAGPGRDELTVRYAIADVPGFVAPEGAVDAEARRRGQTVYLPDGRVPLHPEVLSEDAASLLPEVERPTFVWTFVLDA
+EGAVASTDLVRARIRSRAQLAYPQVQALLD---------------DDAAPEAAD-WPAEVRASLALLPEVGARRTAQEAA
+RGGASLSMPDQEISVV-DGAYTLVQRVPLAAEDHNAQLSLMTGMAAARIMLEAGVGILRTMPAPDPDAVDAFRARTRALG
+LPWGEELDYGAYLRTVDPTDPRGLAVMHAATTLFRGAGYTAFDRGSVDPALRALPEDPEQAALAAPYAHTTAPLRRLVDR
+FVLVLCHAHVAGEPVPDWVRRALPDLPALMAESGRRASAADRAATDLVEAALLAARVGSVLEGTAVRTSEKGTDVQLTDP
+AVSLRVPGRAEPGTVVRVRVDAVDVAAGKVTASGVDWPHSAR
+>SA211_MHAAABBN_01248
+MSSHALGLRGPADPALLERLAALRTELELPSAFPTPVLAEAEAAAHGVHVGLAGSPDHADRTALPFVTVDPAGATDLDQA
+LLLTPSDD-DGILVRYAIADVPAFVAPGGAVDAEARRRGQTVYLPDGRVPLHPEVLSEDAASLLPDRERPAFVWTFLLDA
+AGAVVETGLERARVRSRAQLTYGQVQAFLDARPGAQAPATPRPGVTDADRAAAEGWPAEVRDSLALLPEVGRRRAAQEAA
+RGGASLNLPDQEVLVTEDGAHELVHRAPLPAEEHNAQLSLLTGMAAAELMLAAGVGILRTMPAPDADAVAAFRERTRALG
+VPWDEGQDYGAYLRSLDPADARHLAVLHAATGLFRGAGYTAFDAQAEDPALRTPPAEPAQAALAAPYAHATAPLRRLVDR
+FVLALCHAHASGAPAPAWVRSALPELPALMADSSRRASAASRTAADLVEAAALESRVGAELEGIAVREAKDGTEVWLLDP
+AVSLRVPGSVPAGTRVRVRIEGVDRASGAITAAGVDWSHSSR
+>TT9_LFPAFLNI_01465
+MSSHALGLRGPADPALLERLAALRTELELPSAFPTPVLAEAEAAAHGVHVGLAGSPDHADRTALPFVTVDPAGATDLDQA
+LLLTPSDD-DGILVRYAIADVPAFVAPGGAVDAEARRRGQTVYLPDGRVPLHPEVLSEDAASLLPDRERPAFVWTFLLDA
+AGAVVETGLERARIRSRAQLTYGQVQAFLDAQPGAQAPTTPRPGVTDADRAAAEGWPAEVRDSLALLPEVGRRRAAQEAA
+RGGASLNLPDQEVRVTEDGAHELVHRAPLPAEEHNAQLSLLTGMAAAELMLAAGVGILRTMPAPDTDAVAAFRERTRALG
+APWDEGQDYGAYLRSLDPADARHLAVLHAATGLFRGAGYTAFDAQAEDPALRTPPDEPAQAALAAPYAHATAPLRRLVDR
+FVLALCHAHAIGAPAPAWVRSALPALPALMADSSRRASAASRTAADLVEAAALESRVGAELEGIAVREAKDGTEVWLLDP
+AVSLRVPGSVPAGTRVRVRIEGVDRASGAITAAGVDWPHSSR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000910.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000910.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4f1fb190dee2bc710c779ab13aa59a1048b01e2c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000910.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01390
+MADVVTVFSLVASHQHLDLDTVARLSAGATGVGPALPGSGAAGAVVLATCNRVEIYAEAD
+ESGVEAAREGLVAAVAAHSSLPDEAVRSAFRVLDSEATARHLFEVGAGLDSAVVGEREIA
+GQVRRALSMARESGTASGSLVRLFESATRTAKDVGSRTALGAAGRSVVSVALDLTEELRG
+LADDDAKAAFWADASVLLIGTGAYAGTTLAQLAERGATAVAVHSASGRAEQFVEDRGGWA
+LALGGGAVAGAVAEADVIIGSSGGERQISPERLQELREDVDRPLTVVDLALSRDFDPAVG
+DLPDVDLITLESVRLAAPEQARAAVAEARVLVDGAVAEYRAAQRGRSADASIKALRRHTL
+AALDREMERVRARHGCTAAAEEVEFALRRMVNQLLHEPIVRAKRLAAEGRLDRYEDGLEA
+VFGIEPPG-STSSPAERPDAGCPAHEDEAGTARIA
+>KBS0714_MOLHKGIG_01535
+----MTVFSLVASHHDLDLDTVARLSAGATGVGPALPGSGAAGAVVLATCNRVEIYAEAD
+AAGVEAARAGLLSAVAASTSLPDEDVHAAFRTLDADATARHLFEVGAGLDSAVVGEREIA
+GQVRRALTAAQEAGTASGPLVRLFESATRTAKDVGSRTALGAAGRSVVSVALDLAEELRG
+LTDAAAQRDFWAGATILLIGTGAYAGTTLAQLADRGATTVGVHSASGRAEQFVADRGGWA
+LALGGEAVAGAVAEADVIIGSSGGERQISPERLQELRKGGRRPLTVVDLALSRDFDPAVA
+DLPDVDLITLESVRLAAPEQAQVAVAEARALVDDAVEEYRAAQRGRSADAAIKALRRHTL
+GVLDRELERVRARHGCTAAAEEVEFALRRMVNQLLHEPSVRAKRLAAEGRLDRYEDALEA
+VFGIEAPG-RPAPAVGTVEAVCPAHEDEGGAARIA
+>KD337_NAFOICDF_01281
+MDVAVTVFSLVASHKDLSLDTVARLSAGSAGVGSALASSTDDGAVVLATCNRVEVYADAR
+DA--DAARERIVAAIAEQSGLPEDAVRSAFRVLDDDASARHLFEVGAGLDSAVVGEREIA
+GQVRRALVDARDAGTATGSLTRLFESATRTAKDVGSHTALGATGRSVVSVALDLAEELRG
+LTDAMARRTFWQEANVLLIGTGAYAGTTLAQLADRGAQAVGVHSASGRAAQFVADRGGWA
+LALGGADVAGAVAEADVIIGSSGGDRQISPERMAGLRRGAERPVTVVDLALSRDFDPAVG
+ELEGVDLITLESVRLAAPEQAQAAVAEARGLVETALEEYTSARRGRTADAAIKALRGHTM
+AALDREMERVRARHGCTAAADEVQFALRRMVNQLLHTPSVRARELAAQGRLDEFEHALEV
+LFDIPVPGTRPADAPGD---ACPATEAD-DARRTA
+>SA211_MHAAABBN_01245
+----MTVFSLVASHHDLDLDTVARLSAGATGVGPALPGSGAAGAVVLATCNRVEIYAEAD
+AAGVEAARAGLLSAVAASTSLPDEDVHTAFRTLDADATARHLFEVGAGLDSAVVGEREIA
+GQVRRALTAAQEAGTASGPLVRLFESATRTAKDVGSRTALGAAGRSVVSVALDLAEELRG
+LTDAAAQRDFWAGATILLIGTGAYAGTTLAQLADRGATTVGVHSASGRAEQFVADRGGWA
+LALGGEAVAGAVAEADVIIGSSGGERQISPERLQELRKGGRRPLTVVDLALSRDFDPAVA
+DLPDVDLITLESVRLAAPEQAQVAVAEARALVDDAVEEYRAAQRGRSADAAIKALRRHTL
+GVLDRELERVRARHGCTAAAEEVEFALRRMVNQLLHEPSVRAKRLAAEGRLDRYEDALEA
+VFGIEAPG-RPAPAVGTVEAACPAHEDDGGAARIA
+>TT9_LFPAFLNI_01462
+----MTVFSLVASHHDLDLDTVARLSAGATGVGPALPGSGAAGAIVLATCNRVEIYAEAD
+GAGVEAARTGLLSAVAASTSLPDEDVHTAFRTLDADATARHLFEVGAGLDSAVVGEREIA
+GQVRRALTAAQEAGTASGPLVRLFESATRTAKDVGSRTALGAAGRSVVSVALDLAEELRG
+LTDAAAQRDFWAGATILLIGTGAYAGTTLAQLADRGATTVGVHSASGRAEQFVADRGGWA
+LALGGEAVAGAVAEADVIIGSSGGERQISPERLQELREGGRRPLTVVDLALSRDFDPAVA
+DLPDVDLITLESVRLAAPEQAQVAVAEARALVDDAVEEYRAAQRGRSADAAIKALRRHTL
+GVLDRELERVRARHGCTAAAEEVEFALRRMVNQLLHEPSVRAKRLAAEGRLDRYEDALEA
+VFGIEAPG-RPAPAVGTVEAACPAHEDDGGAARIA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000912.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000912.fa
new file mode 100644
index 0000000000000000000000000000000000000000..840e7564d8b198d7d5808873d80d4db13ef3265c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000912.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01392
+MTGTALVVGGGIAGLVAAHRLCAAGWEVTLAEATSVLGGAVSARFLDVPSHGETGAPESQTLELDAGAESFAVRGTAVRA
+LLEELGLGGKVVAPEPLGSWLHGPAGPVPAPRLGLVSIPGDLEAEDLAAALSGPGLARAREDAVAPMDRWADALAAGEPV
+TVAAIVADRLGEEVLKRLVAPVVAGVHSADPAVVELERVAPGLLASAVEHGGLAAGVAALRGSSTPGSLVAGVDGGMSRV
+TGRLVDALREAGATVLRGVRVAALSRVPAMGGWWAQISDRDDEVVRGLDVDRVVLAVDGATAWDLLAPLSGGDLDPDAGP
+ALGDGVALTTLVVEAPGLDAAPRGTGMLVGAGTDVAAKALTHATAKWAWLREVVARPDHDGVARHPHRHVVRLSYGRSGA
+EPGGLGHRSTDEELLARAVVDAAALTGVPLSEQDVVARAVVRWRPSIPPQAGPDREAADALIAWSRGQAGLDLVGSWVHG
+TGLAAVVASVDRAFDA-PPPAG
+>KBS0714_MOLHKGIG_01533
+MSGTALVVGGGIAGLVAAHRLSAAGWDVTLAEATSVLGGAVSPRFLDVPSHGETGAPETQTLELDGGAESFAVRGAAVRA
+LVEELGLGEKIVAPEPLGSWLHGPAGPVRAPRLGIVGIPGDLDAEDLAAALTPAGLERARQDAEAPMDRWAAALAAGEPV
+TVAQVVADRLGDEVLDRLVAPVVAGVHSADPAVVELERVAPGLLAAAVEHGGLAAGVAALRSTGTPGSLVAGLDGGMVRL
+TGRLVEALREDGATVLRGVRVAALSRVPATGGWWAQISDRDDEVVRGLDVDRVVLAVDGVTAWDLLAPLSAEALDPDAGP
+ALGEGIALATLVVEAAGLDDAPRGTGVLVGAGTDVAAKALTHVTAKWAWLREVVARPQEDGVARHPHRHVLRLSYGRQGG
+GPEALGHRSADEELLAQALVDTATLTGVPLAEEDVVARTVTRWRRSIPPQAGPDRAKADTLIDWARDVPGLDLVGSWVHG
+TGLAAVVAGVDRTLGADAPPAG
+>KD337_NAFOICDF_01283
+MSGSALVVGGGIAGLLAARRLNQQGWEVTLAEATSVLGGTLSARFLDVPSVSDSGAVERQTLELDGGAESFAVRGAAVRA
+LVDELGLGDDVVSPEPLGSWLHGPAGAVPAPRVGLVGIPGDLDAPDVAAALSPAGLERARRDLTEPMDRWAAARAAGEPV
+TVAALVADRLGDDVLERLVVPVVGGVHSADPAVVDVERVAPGLLAAAVEQGSLARGVAALRGGQTPGAAVAGVDGGMAKV
+TGRLVQTLREDGVTVLRGVRVAALSRLGADGRWWAQISDRDEEVVRGLEADRVVLAVDGVAAWELLAPVSGDAVDPDAGP
+ALGEGVALATLVVEAPGMDAAPRGTGLLVAPGTDVRAKALTHSTAKWAWLRSVVDRPDESGAPRHPHRHVLRLSYGRHGG
+AAGDLGFRSADEDLLAAAVADAEALTGVELSADDVLASTVTRWRRPIPPQHGPDREAMDRLIAWAQDVPGLDLVGSWVHG
+TGLAAVVAGVERTVA--PAAA-
+>SA211_MHAAABBN_01243
+MSGTALVVGGGIAGLVAAHRLSAAGWDVTLAEATSVLGGAVSPRFLDVPSHGETGAPETQTLELDGGAESFAVRGAAVRA
+LVEELGLGEKIVAPEPLGSWLHGPAGPVRAPRLGIVGIPGDLDAEDLAAALTPAGLERARQDAEAPMDRWAAALAAGEPV
+TVAQVVADRLGDEVLDRLVAPVVAGVHSADPAVVELERVAPGLLAAAVEHGGLAAGVAALRSTGTPGSLVAGLDGGMVRL
+TGRLVEALREDGATVLRGVRVAALSRVPATGGWWAQISDRDDEVVRGLDVDRVVLAVDGVTAWDLLAPLSAEALDPDAGP
+ALGEGIALATLVVEAAGLDDAPRGTGVLVGAGTDVAAKALTHATAKWAWLREVVARPQEDGVARHPHRHVLRLSYGRQGG
+GPEALGHRSADEELLAQALVDTATLTGVPLAEEDVVARTVTRWRRSIPPQAGPDRAKADTLIDWARDVPGLDLVGSWVHG
+TGLAAVVAGVDRTLGADAPPAG
+>TT9_LFPAFLNI_01460
+MSGTALVVGGGIAGLVAAHRLSAAGWDVTLAEATSVLGGAVSPRFLDVPSHGETGAPETQTLELDGGAESFAVRGAAVRA
+LVEELGLGEKIVAPEPLGSWLHGPAGPVRAPRLGIVGIPGDLDAEDLAAALTPAGLERARQDAEAPMDRWAAALAAGEPV
+TVAQVVADRLGDEVLDRLVAPVVAGVHSADPAVVELERVAPGLLAAAVEHGGLAAGVAALRSTGTPGSLVAGLDGGMVRL
+TGRLVEALREDGATVLRGVRVAALSRVPATGGWWAQISDRDDEVVRGLDVDRVVLAVDGVTAWDLLAPLSAEALDPDAGP
+ALGEGIALATLVVEAAGLDDAPRGTGVLVGAGTDVAAKALTHATAKWAWLREVVARPQEDGVARHPHRHVLRLSYGRQGG
+GPEALGHRSADEELLAQALVDTATLTGVPLAEEDVVARTVTRWRRSIPPQAGPDRAKADTLIDWARDVPGLDLVGSWVHG
+TGLAAVVAGVDRTLGADAPPAG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000913.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000913.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cc03cd7b8c06475c231daacc041da43e683b0b42
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000913.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01393
+MTKDTATTPAEAGKDWFTTYTVFARPQGQPGWLGLEGRDAKKAVQEFDALVADLAKAGVT
+VRGVYDVSGMREAGDVMVWMYGQVPEDLQAAIRRLRRTRLLERTTMVLSAMGADRLAEFN
+KDHIPAFAMGRKALPWLCFYPFVRSYDWYLMEPKERARMLREHGQLGQEFPQVWANTTSA
+FGLNDWEWLLGLEAPELKDLVDMMRHLRNNETRLYVRAEVPFYTGRRVETADLLEVLA
+>KBS0714_MOLHKGIG_01532
+MTKDSTTTPAEAGKDWFTTYTVFARPQGEPGWLGLEGRDAKKAAKEFDEAVARVAQTGVT
+VRGVYDVSGMREAGDVMVWMYGQVPEDLQAAIRELRRTRLLEGTTMVLSAMGADRMAEFN
+KDHVPAFAMGRKALKWLCFYPFVRSYDWYLLDPKERARMLREHGQLGQDFPQVWANTTSA
+FGLNDWEWLLGLEADELTDLVDMMRHLRNNETRLHVRSEVPFYTGRRLETAEIAEVLA
+>KD337_NAFOICDF_01284
+M----SNTAAQPGQDWFTTYTVFARPQGEPGWLGLDGREAKKAVKEFDGVVKSLATRGVT
+VRGVYDVSGMRAEGDVMVWMYAHAPEDLQAAIRDLRRTRLLDGTNMVLSAMGADRMAEFN
+KDHIPAFAMGRKPLDWLCFYPFVRSYDWYTLDPKERARMLREHGKLGQDFPQVWANTTSA
+FALNDWEWLLGLEAPKLNDLVDMMRHLRDNETRHYVREEVPFYTGRRLETSELPEVLA
+>SA211_MHAAABBN_01242
+MTKDSTTTPAEAGKDWFTTYTVFARPQGEPGWLGLEGRDAKKAAKEFDEAVARVAQTGVT
+VRGVYDVSGMREAGDVMVWMYGQVPEDLQAAIRELRRTRLLEGTTMVLSAMGADRMAEFN
+KDHVPAFAMGRKALKWLCFYPFVRSYDWYLLDPKERARMLREHGQLGQDFPQVWANTTSA
+FGLNDWEWLLGLEADELTDLVDMMRHLRNNETRLHVRSEVPFYTGRRLETAEIAEVLA
+>TT9_LFPAFLNI_01459
+MTKDSTTTPAEAGKDWFTTYTVFARPQGEPGWLGLEGRDAKKAAKEFDEAVARVAQTGVT
+VRGVYDVSGMREAGDVMVWMYGQVPEDLQAAIRELRRTRLLEGTTMVLSAMGADRMAEFN
+KDHVPAFAMGRKALKWLCFYPFVRSYDWYLLDPKERARMLREHGQLGQDFPQVWANTTSA
+FGLNDWEWLLGLEADELTDLVDMMRHLRNNETRLHVRSEVPFYTGRRLETAEIAEVLA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000915.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000915.fa
new file mode 100644
index 0000000000000000000000000000000000000000..eda9a58bac9905a97eb248758358a4b94ac607e1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000915.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01395
+MST--------LRIGTRGSALATTQTTHVAQALAERAGLEHELVVIRTEGDVTTGSLASL
+GGTGVFASALRAAILDGAVDLAVHSLKDLPAAQPDTLEIAAVPERADLRDALCARDGLTL
+ATLPEGARVGTGSPRRVAQLKALRPDLVLVDIRGNVQTRLARVPGLEQHDDGAPAAAGSP
+RGDLDAVILACAGLDRLGLDHVITERIDPDVMVPAPGQGALAVEVRAEDESFLGAALLEP
+DAPVGRLRAGLELVDDRATHVAVTAERALLRRLEAGCAAPIGAVARVVDGEA----GAPR
+IEMTAMVAAVDGSRVLRRTSSVQLDPVPEDLAADPAAADEWLEDTLFVAAEALGVHVAEQ
+FVAEGADLLPGTVRGVDRGDGAPQPDDPA
+>KBS0714_MOLHKGIG_01530
+MTP--------LRIGTRGSALATTQTSHVAETLTERSGLAHELVVIRTEGDVTTGSLASL
+GGTGVFASALRAAVLDGVVDAAVHSLKDLPAAQPETLEIAAVPARADLRDALCARDGLTL
+ATLPEGARVGTGSPRRVAQLKALRPDLELVDIRGNVQTRLARVPGLEQHDDHAPAAAGSP
+RGDLDAVILACAGLNRLGLDHVITERIDPEVMVPAPGQGALAVEIRAEDESFLGRALLDP
+EAPVGRLHAALELVDDRDTHVAVTAERALLRRLEAGCAAPIGAVARVTDGEA----GAPR
+IEMTAMVAALDGSRVLRRTSSVQLDPVPTDVAGDPAAGDEWLEDTLFVAAEALGVHVAEQ
+FVAEGADLLPGTVRGVDRGDGAPRPDDPA
+>KD337_NAFOICDF_01286
+MSGPGAPAGDGLRVGTRGSALATTQTTHVAEALTDRSGMPHELVVIRTEGDVTTGSLASL
+GGTGVFASALRSAVLDGRVDLAVHSLKDLPAAQPAGLEIAAVPPRADLRDALCARDGLTL
+ATLPEGARVGTGSPRRVAQLRALRPDLELVDIRGNVQTRLARVAGHEVHDDDAPAAAGAP
+RGDLDAVVLACAGLDRLGLQHVITERIDPEVMLPAPGQGALAVEIREEDGPLLGPSAVDP
+DSHAGRLRAALELVDDRDTHVAVTAERALLLRLEAGCAAPIGAVARVEEGTAVDGSPAPR
+IVMSAMVAAVDGSQVLRRTSSVQLDAVPEDVAGDPAEADEWIEDTLFMAAGALGVHLAEL
+FVAEGADLLPGTVRGVAKPD----PE--A
+>SA211_MHAAABBN_01240
+MTP--------LRIGTRGSALATTQTTHVAETLTERSGLAHELVVIRTEGDVTTGSLASL
+GGTGVFASALRAAVLDGVVDAAVHSLKDLPAVQPETLEIAAVPARADLRDALCARDGLTL
+ATLPEGARVGTGSPRRVAQLKALRPDLELVDIRGNVQTRLARVPGLEQHDDHAPAAAGSP
+RGDLDAVILACAGLDRLGLDHVITERIDPEVMVPAPGQGALAVEIRAEDESFLGRALLDP
+EAPVGRLHAALELVDDRDTHVAVTAERALLRRLEAGCAAPIGAVARVTDGEA----GAPR
+IEMTAMVAALDGSRVLRRTSSVQLDPVPTDVAGDPAAGDEWLEDTLFVAAEALGVHVAEQ
+FVAEGADLLPGTVRGVDRGDGAPRPDDPA
+>TT9_LFPAFLNI_01457
+MTP--------LRIGTRGSALATTQTSHVAETLTERSGLAHELVVIRTEGDVTTGSLASL
+GGTGVFASALRAAVLDGVVDAAVHSLKDLPAAQPETLEIAAVPARADLRDALCARDGLTL
+ATLPEGARVGTGSPRRVAQLKALRPDLELVDIRGNVQTRLARVPGLEQHDDHAPAAAGSP
+RGDLDAVILACAGLDRLGLDHVITERIDPEVMVPAPGQGALAVEIRAEDESFLGRALLDP
+EAPVGRMHAALELVDDRDTHVAVTAERALLRRLEAGCAAPIGAVARVSDGEA----GAPR
+IEMTAMVAALDGSRVLRRTSSVQLDPVPADVAGDPAAADEWLEDTLFVAAEALGVHVAEQ
+FVAEGADLLPGTVRGVDRGDGAPRPDDPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000919.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000919.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3e962c4fcc3fc4806ba3821a7831a942b3f41911
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000919.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01399
+MPPHLRPGQTLLLASLVFGLFFGAGNLIFPASLGRDAGAAVTPATLGFLVTAVGLPVLGI
+VASAVTGARSVREMTAPVSRRFAVAFTCLLYLTIGPLFAIPRTATVSYEIGVAPLAGDGS
+LRLLGFTAAFFAVAAVAAFRPGRLMEWVGRYLTPAFLVLLGALVAAAVVTPMSTGALPSP
+APAYADGALVRGLLDGYTTMDALASLAFAVVIVDAARRLGVTGPRRMAVELGKAGLLGGA
+AMAVVYASLAYIGATSHGAFAQAANGGDVLARTASHFFGTAGAYLIAAIVFVACLKTCIG
+LIVACAEMFAEMFPGSYRLWAGLFLVVSFALANLGLEAIIAWSVPVLMLLYPIAVVVILL
+GLAWAWVRDRPAVARWVVACTGLAAVFDLLGALPEALGTTALVTALTGLAGRVLPGYAVG
+FGWVVPALVGLVVGAVAAASRPRPRRGEREATPIAAGHGRTAAD
+>KBS0714_MOLHKGIG_01526
+MPPRLRPGQTLLLASLVFGLFFGAGNLIFPAGLGRDAGAAVTPATLGFLVTAVGLPVLGI
+VASAVTGARSVREMTAPVSRRFAVAFTCLLYLTIGPLFAIPRTATVSYEIGVAPLAGDGG
+LRLLGFTAAFFAVAAVAAFRPGRLMEWVGRYLTPAFLVLLGALMAAAVVAPMSTGALPSP
+TPAYADGALVRGLLDGYNTMDALASLAFAVVIVDAARRLGVTGPRRMAVELGKAGLLGGA
+AMAVVYASLAYVGATSHGAFAQAANGGDVLARSASHFFGAAGVYLIAAIVVVACLKTCIG
+LIVACTEMFAEMFPGSYRLWASLFLVVSFALANLGLEAIIAWSVPVLMFLYPIAVVVILL
+GLAWAWVRDHPAVARWVVACTGLAAFFDLLGALPEALATTPPVTALTGLAGRVLPGYAVG
+FGWVVPALVGLVVGTVAAASRPRPRRGEREAIPVTAGHGRTAAD
+>KD337_NAFOICDF_00047
+MSARLRPGQTLLLASLVFGLFFGAGNLIFPAGLGRDAGSAVVPATLGFLLTAVGLPVLGI
+IASALTRSRSVREMTAPISPWFATAFTCLLYLAIGPLFAIPRTATVSYEIGVAPLAGDGP
+W-LPVFTLVFFGVAAVAAFRPGRLLDWVGRFLTPVFLLLLGALAVAAVVAPMSSGDLPAP
+AGPYADGALTAGILDGYNTMDALASLAFAVLIVEAAGRLGVDSPRRLAVELGKAGIVGGL
+GMAVVYGALAYIGATSHGALPGAASGGAVLAGTASHYFGPAGTWLIAAIVLAACLKTSIG
+LIVACGEMFAEMFPGSYRVWASVFLLVSLVIANLGLEAIIAWSIPVLMFLYPLAIVIIAL
+GLGWGWVRHHLTVARAVVAFTAVAAVFDLLAALPETLAATGPVTALTDLAGRILPWYENG
+FGWVVPALVGLVVGLVLEAARGRGRSAA------------VADA
+>SA211_MHAAABBN_01235
+MPPRLRPGQTLLLASLVFGLFFGAGNLIFPAGLGRDAGAAVTPATLGFLVTAVGLPVLGI
+VASAVTGARSVREMTAPVSRRFAVAFTCLLYLTIGPLFAIPRTATVSYEIGVAPLAGDGG
+LRLLGFTAAFFAVAAVAAFRPGRLMEWVGRYLTPAFLVLLGALVAAAVVAPMSTGALPSP
+TPAYADGALVRGLLDGYATMDALASLAFAVVIVDAARRLGVTGPRRMAVELGKAGLLGGA
+AMTVVYASLAYVGATSHGAFAQATNGGDVLARSASHFFGTAGAYLIAAIVFVACLKTCIG
+LIVACAEMFAEMFPGSYRLWAGLFLVVSFALANLGLEAIIAWSVPVLMFLYPIAVVVILL
+GLAWAWVRDRPAVARWVVACTGLAAFFDLLGALPEALVTTPPVTALTGLAGRVLPGYAVG
+FGWVVPALVGLVVGTLAAASRPRSRRGEREAIPVTAGHGRTAAD
+>TT9_LFPAFLNI_01453
+MPPRLRPGQTLLLASLVFGLFFGAGNLIFPAGLGRDAGAAVTPATLGFLVTAVGLPVLGI
+VASAVTGARSVREMTAPVSRRFAVAFTCLLYLTIGPLFAIPRTATVSYEIGVAPLAGDGG
+LRLLGFTAAFFAVAAVAAFRPGRLMEWVGRYLTPAFLVLLGALVAAAVVAPMSTGALPSP
+TPAYADGALVRGLLDGYATMDALASLAFAVVIVDAARRLGVTGPRRMAVELGKAGLLGGA
+AMAVVYASLAYVGATSHGAFAQAANGGDVLARTASHFFGTAGAYLIAAIVFVACLKTCIG
+LIVACAEMFAEMFPGSYRLWASLFLVVSFALANLGLEAIIAWSVPVLMFLYPIAVVVILL
+GLAWAWVRGRPAVARWVVACTGLAASFDLLGALPEALATTPPVTALTGLAGRVLPGYAVG
+FGWVVPALVGLVVGTVAAASRPRPRRGEREAIPVTAGHGRTAAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000923.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000923.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5f46901713d30536afa6499b30ada55549eab1cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000923.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01403
+MT---TPPADP--RPVPDGPLTLGEGLEAVARLVPAGRAVSYGDLAGLLGVGGPRQAGRA
+MAKSAPGTPWWRVVSADGSLPGELARRAAVEHAREGTPVRPGG-----RVDLPRARWEPD
+EAALGAVAAIAARIVSGPGARMQA
+>KBS0714_MOLHKGIG_01522
+MT---DHPVLPGARHRDDGPLTLGEGLEALARLVPPGRAVSYGGLAGLLGVGGPRQAGRA
+MAESSPGTPWWRVVRADGSLPPELAARAAVEHEREAMPRTPAG-----RVDLPRARWEPD
+DGAARAIRAIADRIVSGPGARMRP
+>KD337_NAFOICDF_01302
+MSPVPSTPPDPDPHLPTDGPVTLGEALAAAARLIPSGRAASYGALAGLLGRGGPRQAGRA
+MAESEPGTPWWRVVRADGSLPEPLRRQARERWAAEGTPVRGSGTVRDQRVDLAQAGWEPD
+AAARAALADLAARV---------G
+>SA211_MHAAABBN_01231
+MT---DHPVLPGARHRDDGPLTLGEGLEALARLVPPGHAVSYGGLAGLLGVGGPRQAGRA
+MAESSPGTPWWRVVRADGSLPPELAARAAVEHEREATPRTPAG-----RVDLPRARWEPD
+DGAARAIRAIADRIVSGPGARMRP
+>TT9_LFPAFLNI_01449
+MT---DHPVLPGARHRDDGPLTLGEGLEALARLVPPGRAVSYGGLAGLLGVGGPRQAGRA
+MAESSPGTPWWRVVRADGSLPPELAARAAVEHEREGTPRTPAG-----RVDLRRARWEPD
+DGAARAIRAIADRIVSGPGARMGP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000930.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000930.fa
new file mode 100644
index 0000000000000000000000000000000000000000..eafe2c7ee12c6592cdaddecf2ef3e4a5273ee4b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000930.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01410
+MADNGRMPPADAAVPVPAEHERGEPVPAAAAVSALARRPVRRGAVRQSTDLDWEGTPVRL
+VRSTARTRTVSAAWREGRLQVNVPARLTPAHEREWIARMVEQVARRAGAGASPGRPGAGS
+QPGSGPGAGSGGDEALMAWAQRLSAAHL-----GGRA-RPASVAWSARQRRRWGSCTPSR
+GTIRLSDRLRGMPDWVVAAVLVHELAHLLESGHGPAFRRLVAAYPRYAEAMAFLDGVAFA
+ESRGRTAQDTWVDDEDAMDADAPDDGPTED-ERA
+>KBS0714_MOLHKGIG_01515
+---------------------------------------------------------MRL
+VRSTARTRTVSAAWRDGRLQVNVPARLSAAQEREWIGRMVAKVGARGGTGQPAADP----
+---DGRPADARSDDALLAWAGRLSAAHL-----GGRA-RPVAVTWSARQRRRWGSCTPAR
+GTIRLSTQLRGMPDWVVAAVLVHELAHLLESGHGPAFRRLVDRYPRYAEAMAFLEGVTFA
+EGRGRTAPDRWAEDEDA----------------G
+>KD337_NAFOICDF_01309
+M-----------------------------------------SPSRTVTDLDWHGTPVRL
+VRSARRTRTVAAVWREGRLQVSVPARLSRAEERRWIERMVDRAGPAPAAHPAPSASAPST
+GL--GSAPDPRGDADLLARADALASAHLDGAAPGGRAPRPASVTWSSRQRQRWGSCTPAR
+GTIRLSAQLRGMPDWVVDAVLVHELAHLSERGHGPRFQALVGRLPRYTEAMAFLAGVTYA
+TSRG--LPGAYPADADVADHARGWPGGDDDVVEG
+>SA211_MHAAABBN_01224
+---------------------------------------------------------MRL
+VRSTARTRTVSAAWRDGRLQVNVPARLSAAQEREWIGRMVAKVGARGGTGQPAADP----
+---DGRPADARSDDALLAWAGRLSAAHL-----GGRA-RPVAVTWSARQRRRWGSCTPAR
+GTIRLSTQLRGMPDWVVAAVLVHELAHLLESGHGPAFRRLVDRYPRYAEAMAFLEGVTFA
+EGRGRTAPDRWAEDEDA----------------G
+>TT9_LFPAFLNI_01442
+MPDNGRMRPVP---PAPGRPPRA--VPAA-----------HRGPARESTDLDWEGTPVRL
+VRSTARTRTVSAAWRDGRLQVNVPARLSAAQEREWIGRMVAKVGARGGTGQPAADP----
+---DGRPADARSDDALLAWAGRLSAAHL-----GGRA-RPVSVTWSARQRRRWGSCTPGR
+GTIRLSTQLRGMPDWVVAAVLVHELAHLLESGHGPAFRRLVDRYPRYAEAMAFLDGVTFA
+EGRGRTAPDRWAEDEDA----------------G
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000931.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000931.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1bd668a2cd0e5868cea1111e1c25d19f2ae7be56
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000931.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01412
+MRAVPPRTTRAYRLPASGWLALGSAGLALLLPTPYILESPGPAVDLLGERDGAEVLRVEG
+GTPDEGEGTLDMTTVMVGGPPISTTSVIDLARSLVDPAVDVVPRELMYPTGMSSEEVGAA
+NTAAMSDSQDTAAAAALHALGRPVPSTLVVHELVPGGPSEGVLRPGDEVIAAAGEPAEDL
+EDLRAAVGAAGPDPVTLTVRRDGAVTELRVPVAAAPEGAPQPWQMGALIETVVDVPLDVE
+LTVPDIGGPSAGLMFALTVLERLTPGAMTGGAPIAGTGTITPDGVVGPIGGIPQKVRGAA
+QAGATTFLAPTANCGELDGRVPEGLQVYAVDTLAQAREIVEAVGRGEPPESARTCG
+>KBS0714_MOLHKGIG_01513
+MRAVPSRTTRAARVPFSGWLALGSAGLALLAPTPYILEGPGPAVDLLGEREGRPVLRVEG
+GEADPGEGTLHMTTVMVGGPPIGTTSLLDLGRGLTDPAVDVAPRELMYPTGVTSDEVGEA
+NSAAMSDSQQTATAAALHELGREVPQRLVVQQLVPGGPAEGVLRAGDEVIAAEGRPVADL
+EAVRAAVGAAGPDPVTLTVRRDGVEQDLEVPVAAAPEGAPQPWQMGALIETAYDVPVDVE
+LTVPDIGGPSAGLMFALTVIERLTPGAMTGGASIAGTGTITGDGVVGPIGGIPQKVRGAA
+EAGATTFLAPTANCEELAGRVPEGLTVYPVDTLGQARDIVEAVARGESPAAARTCG
+>KD337_NAFOICDF_01311
+--------------------------------MPYILEGPGPAIDVLGEQDGTPVLTVEG
+GTADPGEGRLDMTTVLVSGPPGGTTGLGDLVTALADGTVDAQPRELVHPSGVSADTVAQS
+NAAAMTDSQDVATAAALRALGRDVPAHLAVHATVPGAPAEGILREGDVILAAAGRSVTDM
+AGIRAAVDAAGPGDLALTLRRDGTERQVSVPVTAADPATGRSWQLGVLLEQRFDLPVQVE
+FALEDIGGPSAGMMFALAVIERLTPGDMTGGARIAGTGTITADGVVGPIGGIPQKMQGAA
+RDGADVFLAPRENCADLAGRVPAGMTVYAVDTLATARAVVEAVGRGERPDDVPTCS
+>SA211_MHAAABBN_01222
+MRAVPSRTTRAARVPFSGWLALGSAGLALLAPTPYILEGPGPAVDLLGEREGRPVLRVEG
+GEADPGEGTLHMTTVMVGGPPIGTTSLLDLGRGLTDPAVDVAPRELMYPTGVTSDEVGEA
+NSAAMSDSQQTATAAALHELGREVPQRLVVQQLVPGGPAEGVLRAGDEVIAAEGRPVADL
+EAVRAAVGAAGPDPVTLTVRRDGVEQDLEVPVAAAPEGAPQPWQMGALIETAYDVPVDVE
+LTVPDIGGPSAGLMFALTVIERLTPGAMTGGAPIAGTGTITGDGVVGPIGGIPQKVRGAA
+EAGATTFLAPTANCEELAGRVPEGLTVYPVDTLGQARDIVEAVARGETPAAARTCG
+>TT9_LFPAFLNI_01440
+MRAVPSRTTRAARVPFSGWLALGSAGLALLAPTPYILEGPGPAVDLLGEREGRPVLRVEG
+GEADPGEGTLHMTTVMVGGPPIGTTSLLDLGRGLTDPAVDVAPRELMYPTGVTSDEVGEA
+NSAAMSDSQQTATAAALHELGREVPQRLVVQQLVPGGPAEGVLRAGDEVIAAEGRPVADL
+EAVRAAVGAAGPDPVTLTVRRDGVEQDLEVPVAAAPEGAPQPWQMGALIESAYDVPVDVE
+LTVPDIGGPSAGLMFALTVIERLTPGAMTGGAPIAGTGTISGDGVVGPIGGIPQKVRGAA
+EAGATTFLAPTANCEELAGRVPEGLTVYPVDTLGQARDIVEAVARGESPAAARTCG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000933.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000933.fa
new file mode 100644
index 0000000000000000000000000000000000000000..481e142135d0a6ec32545e19800bdd690ca0d49e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000933.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01415
+MQEQFTAWSVLVDAGLIGALLAVGTLARAVIKPLQTLMIPASVIAGILGLVLGPNVLGWL
+PFSTQLGTYGSILIVIVFVCIALTDDFDVRKIGRPVGSFASYGVLIYASQVAIGALVALL
+VLQPLFSTPDSFAALLFAGWAGGFGSAAAVGQAYAANGDMTVTSLAYTSATVGMIVGVVG
+GIIQAKIGARRGHAKEFAGLTSIPDELRTGVLDQVQERPVIGRHTFSAASVESLAFQVGV
+VAMIAAAAHGVVTWITAVWPNIVGEDGPKLIIPAFAVAFILGLIGRVVFQATKTAKFLDP
+GSLNSVSGTATDILIVCGIASIAPTVVVDYWQPLLVLFVIGLALALFLGLVVAPRVMTDA
+WFEKQLFTWGWATGAVATGVAMLRIVDPKLKSGTMEQFGVAYIPVVPVEIAAVSFVPLLL
+IAGLSWAVVGIWGAIAIAAILAAIWLRRTDPGVRSPAQQAVRAASR
+>KBS0714_MOLHKGIG_01487
+MQEQFTAWSVLVDAGLIGALLAVGTLARAVITPLQTLMIPASVIAGILGLVLGPNGLGWL
+PFSSQLGTYGSILIVIVFVCIALTDDFDVRKIGRPVGAFASYGVLIYASQVAIGALVTLV
+LLQPLFDAPDSFAALLFAGWAGGFGSAAAVGQAYAANGDATVTSLAYTSATVGMIVGVVG
+GIIQAKIGAQRGHAREFAGLTSIPEELRTGVLNQVEERPVIGRHTFSAASVESLAFQVGV
+VAMIAAAAHGVVSWITSVWPSVVGEDGPQLIIPAFAIAFLLGLIARVLFQATKTAKFLDP
+GSLNSVSGTATDILIVCGIAAIAPTVVVDYWQPLLLLFVIGLALALFLGIVVAPRVMTDA
+WFEKQLFTWGWATGAVATGVAMLRIVDPKLKSGTMEQFGVAYIPVVPVEIAAVSFVPLLL
+LAGLSWAVVGIWGAIAVIAIIAAVWLRRTDPGRRTPAQQAVRASSR
+>KD337_NAFOICDF_01314
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------MTWFQGVWPSIVGPEGPKLMIPAFAVAFVLGIIGRLLLQVTKTATFLDS
+ASLNSVSGTATDILIVCGIASIAPKVVLDYWQPLLILFVVGLALAVLLGLVVAPHVMTES
+WFEKQLFTWGWATGAVATGVAMLRIVDPKLKSGTMEQFGVAYITVVPVEIAAVSFVPLLI
+IAGLSWAVVGIWDAIAEAAIIAAVFLVRSDPARKS-------AVPA
+>SA211_MHAAABBN_01219
+MQEQFTAWSVLVDAGLIGALLAVGTLARAVITPLQTLMIPASVIAGILGLALGPNGLGWL
+PFSSQLGTYGSILIVIVFVCIALTDDFDVRKIGRPVGAFASYGVLIYSSQVAIGALVTLV
+LLQPLFDAPDSFAALLFAGWAGGFGSAAAVGQAYAANGDATVTSLAYTSATVGMIVGVVG
+GIIQAKIGAQRGHAREFAGLTSIPEELRTGVLNQVEERPVIGRHTFSAASVESLAFQVGV
+VAMIAAAAHGVVSWITAVWPSVVGEDGPQLIIPAFAIAFLLGLIARVLFQATKTAKFLDP
+GSLNSVSGTATDILIVCGIAAIAPTVVVDYWQPLLLLFVIGLALALFLGIVVAPRVMTDA
+WFEKQLFTWGWATGAVATGVAMLRIVDPKLKSGTMEQFGVAYIPVVPVEIAAVSFVPLLL
+LAGLSWAVVGIWGAIAVIAIIAAVWLRRTDPGRRTPAQQAVRASSR
+>TT9_LFPAFLNI_01437
+MQEQFTAWSVLVDAGLIGALLAVGTLARAVITPLQTLMIPASVIAGILGLALGPNGLGWL
+PFSSQLGTYGSILIVIVFVCIALTDDFDVRKIGRPVGAFASYGVLIYSSQVAIGALVTLV
+LLQPLFDAPDSFAALLFAGWAGGFGSAAAVGQAYAANGDATVTSLAYTSATVGMIVGVVG
+GIIQAKIGAQRGHAREFAGLTSIPEELRTGVLNQVEERPVIGRHTFSAASVESLAFQVGV
+VAMIAAAAHGVVSWITAVWPSVVGEDGPQLIIPAFAIAFLLGLIARVLFQATKTAKFLDP
+GSLNSVSGTATDILIVCGIAAIAPTVVVDYWQPLLLLFVIGLALALFLGIVVAPRVMTDA
+WFEKQLFTWGWATGAVATGVAMLRIVDPKLKSGTMEQFGVAYIPVVPVEIAAVSFVPLLL
+IAGLSWAVVGIWGAIAIIAIIAAVWLRRTDPGRRTPAQQAVRASSR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000934.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000934.fa
new file mode 100644
index 0000000000000000000000000000000000000000..85d1635ff83e1769771fc3d35599fb47d6d2f756
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000934.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01416
+MVKQSIFGRISTLAKANINAMLDKAEDPQKMLDQMVRDYTNNIAEAEAAVAQTIGNLRMI
+EDDYREDQDAARSWGQKALAASQKADDFRTKGDAASAEKFDNLAKVAIERQMDSERQAKS
+AEPTITSQREIVERLKTGLDQMKVKRQQLVSKRDELTARAKSAHAQSAVADAVKSIDLLD
+PTSEVSRFEEKVRREEARVRGQQELAASSLDAQFESLEDLGEKTEVEARLAALKSGGAGQ
+SALTAGGSEGSD-LALDYGAETTAEQGAEQTRVE-RG
+>KBS0714_MOLHKGIG_01486
+MVKQSIFGRISTLAKANINAMLDKAEDPQKMLDQMVRDYTNNIAEAEAAVAQTIGNLRMI
+EDDYREDQDASRSWGQKALAASQKADDFRAKGDTASADKFDNLAKVAIERQMDFERQAKS
+AEPTIASQREIVERLKTGLDQMKVKRQQLVAKRDELTARAKSAHAQSAVADAVKSIDLLD
+PTSEVSRFEEKVRREEARVRGQQEIAASSLDAQFESLEDLGEKTEVEARLAALKAGGAGQ
+AALTSGDVDADETLTLDYAAEGT----AEETGTA-RG
+>KD337_NAFOICDF_01316
+MVKQSILGRITTLAKANINAMLDKAEDPQKMLDQMVRDYTNNIAEAEAAVAQTIGNLRMM
+EDDYREDQEAARSWGQKALAASQKADEFRTKGEAANADKFDNLAKVAIERQMDAERQAKT
+AEPTITSQREIVDRLKTGLDQMKVKRQQLVSKRDELTARSRTAEAQTKVNEAVKSIDIMD
+PTSEISRYEEKVRREEARVRGQQELAASSLDAQFESLEDLGEQTEVEARLAALKSGSA-P
+SALTAG----SEELTLDYSGAET----GTQTGTAERA
+>SA211_MHAAABBN_01218
+MVKQSIFGRISTLAKANINAMLDKAEDPQKMLDQMVRDYTNNIAEAEAAVAQTIGNLRMI
+EDDYREDQDASRSWGQKALAASQKADDFRTKGDTASADKFDNLAKVAIERQMDFERQAKS
+AEPTIASQREIVERLKTGLDQMKVKRQQLVAKRDELTARAKSAHAQSAVADAVKSIDLLD
+PTSEVSRFEEKVRREEARVRGQQEIAASSLDAQFESLEDLGEKTEVEARLAALKAGGAGQ
+AALTSGDVDADETLTLDYAAEGT----AEETGTA-RG
+>TT9_LFPAFLNI_01436
+MVKQSIFGRISTLAKANINAMLDKAEDPQKMLDQMVRDYTNNIAEAEAAVAQTIGNLRMI
+EDDYREDQDASRSWGQKALAASQKADDFRTKGDTASADKFDNLAKVAIERQMDFERQAKS
+AEPTIASQREIVERLKTGLDQMKVKRQQLVAKRDELTARAKSAHAQSAVADAVKSIDLLD
+PTSEVSRFEEKVRREEARVRGQQEIAASSLDAQFESLEDLGEKTEVEARLAALKAGGAGQ
+AALTSGDVDADETLTLDYAAEGT----AEETGTA-RG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000937.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000937.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c7876b5dfdf77c3058b7b6d531d981ccb7496b26
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000937.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01419
+----MTTPITPAALAAEHGWRTVLAVGAHPDDLDFGAAATLAGLSAAGLRVELCVVTDGD
+AGGFDSEGPEAMTARRHAEQRAAAAVVGAHEVHFLGERDGHLEPDHGVRRKLVALMRRVR
+PDVVLSTHPERDWELMQAAHPDHLACGEAVVRAAYPAVENPYAYPELAAEGLEAFKIRHL
+LLYSAPAARRNTVVDVTGLEDVKLRALDAHISQHPDVAAMRRHVLAQMTEHHRRAAGPAA
+APGLAEAFHLVTVNGPGTISGF
+>KBS0714_MOLHKGIG_01483
+-----------------------MAVGAHPDDLDFGAAATLAGFSAAGLHIELCIVTDGD
+AGGFDSEGAEAMTARRHAEQRAAAAVVGAAEVHFLGERDGHLEPDHGVRRKLVALMRRVR
+PDVVLSTHPERDWERMQAAHPDHLACGEAVVRAAYPAVENPYAYPELAAEGLEAFKIRNL
+LLYAAPAARRNTVVDVTGLAEQKLRALDAHLSQHPDVDAMRRHVLAQMAEHHRHAAGPAA
+GPGHAEAFHLVTVNGPGTIAGF
+>KD337_NAFOICDF_01319
+MSAVPESLPTPADLAVRHGWRTVLAFGAHPDDLDFDASATLAGLAAAGVRVELCVVTDGD
+AGGFDSDGPEAMTARRHAEQRAAAAVIGAADVHFLGERDGHLEPTHEVRRRIVELMRRVR
+PDVVLCPHPERDWESMQASHPDHLACGEAVVRAAYPAVENPYAYPELADAGLDAFRIRHL
+MLYTAPAARRNLTVDVTGLEDVKLRALDAHVSQHPDAPAMREAVRAKLTRRHREAAGPDA
+PAGSGEAYHLVTVNGDGVIAGF
+>SA211_MHAAABBN_01215
+---MTTTLTTPAALAAHHGWRRVLAVGAHPDDLDFGAAATLAGFSAAGLHIELCIVTDGD
+AGGFDSEGPEAMTARRHAEQRAAAAVVGAAEVHFLGERDGHLEPDHGVRRKLVALMRRVR
+PDVVLSTHPERDWERMQAAHPDHLACGEAVVRAAYPAVENPYAYPELAAEGLEAFKVRNL
+LLYAAPAARRNTVVDVTGLAEQKLRALDAHLSQHPDVDAMRRHVLAQMAEHHRRAAGPAA
+APGHAEAFHLVTVNGPGTIAGF
+>TT9_LFPAFLNI_01433
+---MTTTLTTPAALAAHHGWRRVLAVGAHPDDLDFGAAATLAGFRAAGLHIELCIVTDGD
+AGGFDSEGPEAMTARRHAEQRAAAAVVGAAEVHFLGERDGHLEPDHGVRRKLVALMRRVR
+PDVVLSTHPERDWERMQAAHPDHLACGEAVVRAAYPAAENPYAYPELAAEGLEAFKVRNL
+LLYAAPAARRNTVVDVTGLAEQKLRALDAHLSQHPDVDAMRRHVLAQMAEHHRRAAGPAA
+APGHAEAFHLVTVNGPSTIAGF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000940.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000940.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4d86e0260b4fdb6607264dec39a61ed0c12f449c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000940.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01422
+MSAADEHCTAYEVLGVDRDADDAAVRRAYRAAARRTHPDAGGDPAEFRAVSRAWQVLGDA
+DARRRYDLSLPAPGAG----RAPASGGAAR---P-GRAAASRPARGAAGRPARTVRYEPP
+PGEGESDAAVLDLPRSSQRVHGAPRPRGILPDEHRVLRQARTLDVLLRHVADALPAARVL
+TGLRLAGRWGRPLDVDHAVLCGHRLALVGSVMVPEGAYTWDGSDLR--SRGRPVAPPLLG
+PAMMAWQQVLPQVTVGGFVHVMTDRDALHGPVVRHARGADDPGARADLLTVPPAPGREFV
+RDLLLFLGTGEDPDLVDRRVLGTLVERLH
+>KBS0714_MOLHKGIG_01480
+MSAAEEHRTAYEVLGVPRDATAEEVRRAYRRAARAAHPDVGGDPAAFRAVTRAWDLLGDA
+EARRRYDLSLPGPDVGPRGPRATAGSGRAR---PSGRS-------GPGGRAARPVRYEPP
+PGEAEADPTVLDLPRSSQRVHGAPRPRGILPDEHRVLRQARTLDVLLRHVADALPAARVL
+TGLRLGGRWGRHLDVDHAVLCGHRLALIGSVMVPEGTYTWDGADLR--SRGRPVAPPLLG
+PAMMAWQQALPQVTVGGFVHVMTDRDARHAPVIRHTRGADAPEAQADLLTAPPAPGIAFA
+REVALFLGTGTDPDLVDRRALGALVGRLH
+>KD337_NAFOICDF_01322
+MSGTGDRRTAYEVLGVPRDADAERIRRAWRAAARRTHPDAGGDARDFRAVTRAWEQLGDP
+EARRRYDLSLPPEPAGTTGRTASAGRSAAQAWPPAGVR-------ERDRPAPGSVVYDPP
+PGQGEHDSSVLDLVRSSQRLHGAPRPRGILPDEHRVVRQARTLDLLARTLPPVLPAVRIL
+TGLHLGGRFGRGLDVDHAVLCGRRLALVGSVQVPDGTYTWDGADLRAGARGRPVAPPLLG
+PAMQAWQHALPQVTVGGFVLVMTDRDAVHSPVIRQARGADRPEAQADLLTAAPAAGRDLL
+RELQLFLGSGPDPDVVDRRALAVLVRHLH
+>SA211_MHAAABBN_01212
+MSAAEEHRTAYEVLGVPRDATAEEVRRAYRRAARAAHPDVGGDPAAFRAVTRAWDLLGDA
+EARRRYDLSLPGPDVGPRGPRATAGSGRAR---PSGRS-------GPGGRAARPVRYEPP
+PGEAEADPTVLDLPRSSQRVHGAPRPRGILPDERRVLRQARTLDVLLRHVADALPAARVL
+TGLRLGGRWGRHLDVDHAVLCGHRLALIGSVMVPEGTYTWDGADLR--SRGRPVAPPLLG
+PAMMAWQQALPQVTVGGFVHVMTDRDARHAPVIRHTRGADAPEAQADLLTAPPAPGIAFA
+REVALFLGTGTDPDLVDRRALGALVDRLH
+>TT9_LFPAFLNI_01430
+MSAAEEHRTAYEVLGVPRDATAEEVRRAYRRAARAAHPDVGGDPAAFRAVTRAWDLLGDA
+EARRRYDLSLPGPDVGPRGPRATAGSGRAR---PSGRS-------GPGGRAARPVRYEPP
+PGEAEADPTVLDLPRSSQRVHGAPRPRGILPDEHRVLRQARTLDVLLRHVADALPAARVL
+TGLRLGGRWGRHLDVDHAVLCGHRLALIGSVMVPEGTYTWDGADLR--SRSRPVAPPLLG
+PAMMAWQQALPQVTVGGFVHVMTDRDARHAPVIRHTRGADAPEAQADLLTAPPAPGIAFA
+REVALFLGTGTDPDLVDRRALGALVDRLH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000946.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000946.fa
new file mode 100644
index 0000000000000000000000000000000000000000..08e4c497d7ad9292973591357f7144e34620a8e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000946.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01428
+MPEA-HDDGA-RPVALGGSPWAGTDAAEAQRVTLGELGAEHWPVLPELPSRGPGADATGR
+SAALLSELAVDLQPHGWRVSPPGAAGSGMDRRRAASFWREDAHRWADTAGAEGAVVERLA
+VRVRGPLSLLGGLWLPGGERVLADHGARRDVAASYLEGLLEAVPRLRAATGAAGLGLLVD
+EPWAAAVLAGALPTASGYRTVRSLPRDEARGLWRELLAGLTALPGVASVWLAPGRRTAS-
+AADVPATAELAALAGECLP--AA-GGEDDDAGAPVRLVVPVGDLDDGPDGTAGTRAAWES
+AAGWADAGRGLTLSPAAHLRPADVVTTWERLGADPAHLRGTGLTAPGRHDATVLRRLRTD
+AAELAARLDDALG
+>KBS0714_MOLHKGIG_01472
+MTEAAHDDGATGPVALGGTPWRGTDVAEAQRVTLGELGADHWPVLPELPDRGPGADATGR
+SAALLQQLAVDLQPHGWRVSPPGAAGSGRDRRRAVSLWREDAHRWADTAGAEGAVVERLA
+VRVRGPLSLLACLWLPGGERVLGDHGARRDVAESYLEGLQDALPRLRRATGAGRLGVVVD
+EPWAAAVLAGTLPTASGYRTVRSLPREEARGLWRAALDGLTALPDVARVWLAPGRRAASP
+GAELPGPAALSTLTGESLP--RPDAAADAPAPAPVSLVVGVGALDDGADGTPGTREAWEA
+AAGWADIGRGLTLAPEPGVRPVEVVRTWERLGVDPGRVGDVGLTAAGLHDPVVLHTLRRD
+AEELTARLAELRG
+>KD337_NAFOICDF_01330
+MPEASDDVGAVRVAALGGAPWRGTDAAEAQLATLGELGAEHWPVLPELPDRGPGADATGR
+SAALLHELAVDLQPHGWRVSPPGVVGSGMDRRRAASFWREDAHRWADTAGAEGAVVERLG
+VRLRGPLSLLGSLWLPGGERVLVDHGARRDVAASYVEGLRDAVPRLAAATGARTLGVVLD
+EPWAAAVLAGALPTASGYRTVRSVPRDEVRALWRDALAALADLPGVGRVWLAPGRRSAGV
+DVPLPDVSALAALAGESLPAAAPSADDDAPAPTRVDLVVPVGALDPGPDGTGGTRAGWET
+AAGWTDAGRGLTLSTATGVRPADVARTWERLGADPGHLAGVGLTVPGPHDAAVLGRLRAD
+AEELAARVGELLG
+>SA211_MHAAABBN_01204
+MTEAAHDDGATGPVALGGTPWRGTDVAEAQRVTLGELGADHWPVLPELPDRGPGADATGR
+SAALLQELAVDLQPHGWRVSPPGAAGSGRDRRRAVSLWHEDAHRWADTAGAEGAVVERLA
+VRVRGPLSLLAGLWLPGGERVLGDHGARRDVAESYLEGLQDALPRLRRATGAGRLGVVVD
+EPWAAAVLAGTLPTASGYRTVRSLPREEARGLWRAALDGLTALPDVARVWLAPGRRAASP
+GAELPGPAALATLTGESLP--RPDAAADAPVPAPVSLVVGVGALDDGADGTPGTREAWEA
+AAGWADIGRGLTLAPEPGVRPVDVVRTWERLGVDPGRVGDVGLTAAGSHDPAVLRTLRRD
+AEELTARLAELRG
+>TT9_LFPAFLNI_01422
+MTEAAHDDGATGPVALGGTPWRGTDVAEAQRVTLGELGADHWPVLPELPERGPGADATGR
+SAALLQELAVDLQPHGWRVSPPGAAGSGRDRRRAVSLWREDAHRWADTAGAEGAVVERLA
+VRVRGPLSLLAGLWLPGGERVLGDHGARRDVAESYLEGLQDALPRLRRATGAARLGVVVD
+EPWAGAVLAGTLPTASGYRTVRSLPREEARGLWRAALARLTALPDVARVWLAPGRRAASP
+GAELPGPAALATLTGESLP--RPDAAADAPARAPVSLVVGVGPLDDGADGSPGTREAWEA
+AAGWADVGRGLTLAPEPGVRPVDVVRTWERLGVDPGRVGDVGLTAAGPHDPAVLRTLRRD
+AEELAARLAELRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000947.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000947.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f57ed4cf917058f431112c3acb096d48c839aba8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000947.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01429
+MSRAKILVVDDDEALAEMIGIVLRNDGFEAAFAADGTAALPAFHRERPDLVLLDLMLPGM
+DGIEVCKLLRSESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE
+GEAKPAEVLQIGDLEIDVAGHQVTRDGAAISLTPLEFDLLVALARRPRQVFTREMLLEEV
+WGYRHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYKAGQG
+>KBS0714_MOLHKGIG_01471
+MGKAKILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGI
+DGIEVCRLIRDESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE
+GEAKPAEVLHIGDLEIDVAGHEVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEV
+WGYRHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYKAGQG
+>KD337_NAFOICDF_01331
+MSKARILVVDDDEALAEMIGIVLRNDDFEPSFAVDGTSALPAFRSARPDLVLLDLMLPGI
+DGIEVCKQIRAESDVPIIMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE
+GEQRPAEALAIGDVRIDVAGHQVSRGGAPISLTPLEFDLLVALARKPRQVFTREMLLEEV
+WGYRHQADTRLVNVHVQRLRAKVEPDPENPTVVLTVRGVGYKAGQV
+>SA211_MHAAABBN_01203
+MGKAKILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGI
+DGIEVCKLIRAESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE
+GEAKPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEV
+WGYRHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYKAGQG
+>TT9_LFPAFLNI_01421
+MGKAKILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGI
+DGIEVCRLIRDESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE
+GEAKPAEVLHIGDLEIDVAGHEVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEV
+WGYRHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYKAGQG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000949.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000949.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5667d3ed4dc9e1bc4bb96d35a64ad85259bb5449
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000949.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01432
+MPHAPAPEPLLESDSGLPAARRAIAALAALGEAFVDLVLPAECAVCAAPGHRLCAPCRLE
+LNAALARPFRAEHGAAALPLGPGGVPLPVVAAGRYADALAAAVLAFKDHHGLHLRAVLGE
+ALCRSAAVARLAPDVPEAAHALLVPVPGGAAGFRRRGYDPLAELVRALPAPWVVSDAVRA
+PRGPGRA---RRAGPSHAGAGSAQRRRRARRWRPVPGRLPAGAPVLLVDDVLTTGATLGA
+LAEAVRRAGGRPVGAVVLAAVAPPADD--PGPVTGAGVG-------------
+>KBS0714_MOLHKGIG_01468
+M-RSP------------PSSPSPPSVFGTLGRALADLVLPAECAVCAAPGHRLCPACAEG
+LTAVLSRPFRAEQDAPALPLGPGGAPLPVMAAGRYADPLAAAVLAFKDHHALHLRGVLGE
+ALCRAVAAARLEPDLPGARHALLVPVPGGAVGFRRRGYDPLAELTRALPAPWLVSDAVRA
+RLLPRASTL-RGGGPSHAGAGAGQRRRRARDWRVAAGRLPAGAPVLLVDDVLTTGATLAA
+LAEAVRRAGGHPVGAVVLAAVAPPRDPAEPGPRPGPRVG-------------
+>KD337_NAFOICDF_01334
+M--------------------------HPLLESVVDLVLPADCAVCGAPGHRLCPDCRCL
+LGRELSAPHRAEEPALALPLGPDGAPLPVWAAGDYRDGLAAALLAFKDHHGFGLRPILGD
+ALARTVAAARLDPGLQEAAHALLVPVPGSASGFRRRGYDPLAELVRSLPAPWVRDDVVRA
+A--PAWSAWPPGGGPSHGGAGSRERRSRRRGWRVREGALRPGTPVLLVDDVLTTGATLAA
+LHRAVRRAGGRPVGGVVVAAVAPPTGDG------GAGVGGAGSTLAGAEPGE
+>SA211_MHAAABBN_01200
+M-RSP------------PSSPSP--AFGALGRALADLVLPAECAVCAAPGHRLCPACAEG
+LTAVLSRPFRAEQDAPALPLGPGGAPLPVMAAGRYADPLAAAVLAFKDHHALHLRGVLGE
+ALCRAVAAARLEPDLPGARHALLVPVPGGAVGFRRRGYDPLAELTRALPAPWLVSDAVRA
+RLLPRASTL-RGGGPSHAGAGAGQRRRRARDWRVAAGRLPAGAPVLLVDDVLTTGATLAA
+LAEAVRRAGGHPVGAVVLAAVAPPRDPAEPGPRPGPRVG-------------
+>TT9_LFPAFLNI_01418
+M-RSP------------PSSPSPPSVFGTLGRALADLVLPAECAVCAAPGHRLCPACAEG
+LTAVLSRPFRAEQDAPALPLGPGGAPLPVMAAGRYADPLAAAVLAFKDHHALHLRGVLGE
+ALCRAVAAARLEPDLPGAPHALLVPVPGGAAGFRRRGYDPLAELTRALPAPWLVSDAVRA
+RLLPRASTL-RGGGPSHAGAGAGQRRRRARDWRVVAGRLPAGAPVLLVDDVLTTGATLAA
+LAEAVRRAGGHPVGAVVLAAVAPPRDPAEPGPRPRPRVG-------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000951.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000951.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fb69b3461159280d157cbce0a8c6852dd86dfcaf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000951.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_01434
+MPSIIDRVLKISDNRVLRRMQGTVDAVNLLEEDFRALSDAELRAETDTLKARHADGESLDLLLPEAFAAVREAAGRTLGQ
+RHYDVQLLGGIALHQGNIAEMKTGEGKTLVATAPAYLNALTGRGVHVITVNDFLASYQAELMGRVFRFLGMETGVVVAGQ
+LPAVRREQYAADITYGTNNEFGFDFLRDNMAWSLDELVQREHHYAIVDEVDSILIDEARTPLIISGPAQGEANRWYGEFA
+RLVRRLEEGSDYEVDHKKRTVGVLGPGIEKVEDHLGIANLYETQNTTLIQFLNNAVKAKELFKRDKDYVVLDGEVQIVDE
+HTGRVLKGRRYNEGLHQAIEAKEGVEVKPENQTLATVTLQNYFRGYDKLAGMTGTAETEAAEFTSTYGLGVVVIPPNRER
+QRVDRNDVVYKNEKVKFDAVVEDIAERHERRQPVLVGTTSVEKSEYLSTLLAKRGIRHEVLNAKNHAREAAIVAQAGRPG
+AVTVATNMAGRGTDIMLGGNAEFTAVARMQELGLDAAEDPEAYEARWPQVLAEAEAAVEDANREVLEAGGLYVVGTERHD
+SRRIDNQLRGRSGRQGDPGESRFYLSLTDELMRNFNPGVAQRIMNSPSIPDDMALEFGFVSKAIQNAQAQVEGRNAEQRK
+NVLKYDDVMNRQREAIYADRRSILEGEDLKDRVRRFVEDAVGNIVDATTEEGHAADWDLDQLWRDLSELYPVGITQEDVL
+EEVGGRGRLKAEDLRRELVSDALLAYEDREAQVGSEALREAERRVVLSAIGRRWQEHLYEMDYLKEGIGLRAMAQREPLV
+EYQREGYTMFQNMLAGIREDSVSTLFKAQITAAPAPTSLPGIKDARGLTMTPQISVEGVEAPQRPSQLRFTGPSEDGQGA
+VTRAGTETGATVEAGTNRRSRREAERRERRS--
+>KBS0714_MOLHKGIG_01466
+MPSIIDRVLKISDNRVLKRMQATVDAVNLLEDDFRALSDAELRAETDTLRARHADGESLDLLLPEAFAAVREAAGRTLGQ
+RHYDVQLLGGIALHQGNIAEMKTGEGKTLVATAPAYLNALSGRGVHVVTVNDFLASYQADLMGRVFRFLGMQTGVIVAGQ
+TPAVRREQYAADITYGTNNEFGFDFLRDNMAWSLDELVQREHHYAIVDEVDSILIDEARTPLIISGPAQGEANRWYGEFA
+RLVRRLEADTDYEVDHKKRTVGILGPGIEKVEDHLGITNLYETQNTTLIQFLNNAVKAKELFKRDKDYVVLDGEVQIVDE
+HTGRVLKGRRYNEGLHQAIEAKEGVEVKPENQTLATVTLQNYFRGYEKLAGMTGTAETEAAEFTSTYGLGVVVIPPNRER
+QRVDRNDVVYKNEKVKFDAVVDDIAERHAKGQPVLVGTTSVEKSEYLSTLLAKRGVRHEVLNAKNHAREAAIVAQAGRPG
+AVTVATNMAGRGTDIMLGGNAEFTAVARMQELGLDAAEDPEAYEARWPEVLAQAEAAVEDAHRAVIEAGGLYVVGTERHD
+SRRIDNQLRGRSGRQGDPGESRFYLSLTDELMRNFNPGVAQRIMNSPSIPDDMALEFGFVSKAIQNAQAQVEGRNAEQRK
+NVLKYDDVMNRQREAIYTDRRSILEGEDLQDRVRRFVEDAVGNIVDAATEEGHATDWDLDQLWRDLAELYPVGISQEDVL
+DEVGGRGRLKAEVLKRELVSDALLAYEDREAQVGSEALREAERRVVLATIGRRWQEHLYEMDYLKEGIGLRAMAQREPLV
+EYQREGYTMFQNMLAAIREDAVRTLFQAQISAAPASTSLPGVQDARAVTMAPQISVEGIDAPQQPAQLRFTGPSEDGQSA
+VTRSGTDSGATVAAGTNRRSRRQAERRGRRG--
+>KD337_NAFOICDF_01337
+MPSIIDRVLKISDNRVLKRMRGTVDAVNLLEDDFRALSDAELRAETDSFKKRLADGETLDLLLPEAFAAVREAAGRTLGQ
+RHYDVQLLGGLALHQGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDFLASYQADLMGRVYRFLGMETGVIVSGQ
+DPATRRAQYAADITYGTNNEFGFDFLRDNMAWSKEELVQRGHHFAIVDEVDSILIDEARTPLIISGPAQGDISRWYGEFA
+RLVRSLERGTDYEVDEKKRTVGVLEPGIEKVEDHLGIANLYESQNTTLVQFLNNAVKAKELFKRDKDYVVLDGEVQIVDE
+HTGRVLAGRRYNEGLHQAIEAKEGVEVKPENQTLATVTLQNYFRGYEKLSGMTGTAETEAAEFTSTYGLGVVVIPPNREK
+QRVDRNDLVYKNEKVKFDAVVKDIAERHATGQPVLVGTTSVEKSEYLSTLLTKAGVRHEVLNAKNHAREAAIVAQAGRPG
+AVTVATNMAGRGTDIMLGGNAEFTAVARMQELGLDAAEDPEAYEARWPEVLEQAEAAVQDAREKVREAGGLYVLGTERHD
+SRRIDNQLRGRSGRQGDPGESRFYLSLTDDLMRNFNPGAAQRIMNSASIPDDMALEFKMVSSAIQNAQSQVEGRNAEQRK
+NVLKYDDVMNRQREAIYADRRAILEGDSLGERVRGFVEDAVGAVVDAATEEGAPVDWDLEKLWETLREVYPVGISPEDVL
+EQVGGRGRLKAADLKRELVSDALLAYDDREAQVGSEALREAERRVVLAMIGRHWQEHLYEMDYLKEGIGLRAMAQREPLV
+EYQREGFTMFQAMLAAIKEDSARTLFHAQIAAAPAPTQLPGVKDARAMTMVPQISVEGVETPRQPARLHLSGPSEDGEGV
+EEKDLAADGAQTPAGANRASRRAEARRRRRGED
+>SA211_MHAAABBN_01198
+MPSIIDRVLKISDNRVLKRMQATVDAVNLLEDDFRALSDAELRAETDTLRARHADGESLDLLLPEAFAAVREAAGRTLGQ
+RHYDVQLLGGIALHQGNIAEMKTGEGKTLVATAPAYLNALSGRGVHVVTVNDFLASYQADLMGRVFRFLGMQTGVIVAGQ
+TPAVRREQYAADITYGTNNEFGFDFLRDNMAWSLDELVQREHHYAIVDEVDSILIDEARTPLIISGPAQGEANRWYGEFA
+RLVRRLEANTDYEVDHKKRTVGILGPGIEKVEDHLGITNLYETQNTTLIQFLNNAVKAKELFKRDKDYVVLDGEVQIVDE
+HTGRVLKGRRYNEGLHQAIEAKEGVEVKPENQTLATVTLQNYFRGYEKLAGMTGTAETEAAEFTSTYGLGVVVIPPNREP
+QRVDRNDVVYKNEKVKFDAVVDDIAERHAKGQPVLVGTTSVEKSEYLSTLLAKRGIRHEVLNAKNHAREAAIVAQAGRPG
+AVTVATNMAGRGTDIMLGGNAEFTAVARMQELGLDAAEDPEAYEARWPEVLAEAEAAVEDAHRAVIEAGGLYVVGTERHD
+SRRIDNQLRGRSGRQGDPGESRFYLSLTDELMRNFNPGVAQRIMNSPSIPDDMALEFGFVSKAIQNAQAQVEGRNAEQRK
+NVLKYDDVLNRQREAIYTDRRSILEGEDLQDRVRRFVEDAVGNIVDAATEEGQATDWDLDQLWRDLAEIYPVGVSQEDVL
+DEVGGRGRLTAEVLKRELVSDALLAYEDREAQVGSEALREAERRVVLATIGRHWQEHLYEMDYLKEGIGLRAMAQREPLV
+EYQREGYTMFQNMLAAIREDAVRTLFQAQISAAPAPTSLPGVKDARAVTMAPQISVEGIDAPQQPAQLRFTGPSEDGQSA
+VTRSGTDSGATVAAGTNRRSRRQAERRGRRG--
+>TT9_LFPAFLNI_01416
+MPSIIDRVLKISDHRVLKRMQATVDAVNLLEDDFRALSDAELRAETDALRARHADGESLDLLLPEAFAAVREAAGRTLGQ
+RHYDVQLLGGIALHQGNIAEMKTGEGKTLVATAPAYLNALSGRGVHVVTVNDFLASYQADLMGRVFRFLGMQTGVIVAGQ
+TPAVRREQYAADITYGTNNEFGFDFLRDNMAWSLDELVQREHHYAIVDEVDSILIDEARTPLIISGPAQGEANRWYGEFA
+RLVRRLEADTDYEVDHKKRTVGILGPGIEKVEDHLGITNLYETQNTTLIQFLNNAVKAKELFKRDKDYVVLDGEVQIVDE
+HTGRVLKGRRYNEGLHQAIEAKEGVEVKPENQTLATVTLQNYFRGYEKLAGMTGTAETEAAEFTSTYGLGVVVIPPNRER
+QRVDRNDVVYKNEKVKFDAVVDDIAERHAKGQPVLVGTTSVEKSEYLSTLLAKRGVRHEVLNAKNHAREAAIVAQAGRPG
+AVTVATNMAGRGTDIMLGGNAEFTAVARMQELGLDAAEDPEAYEARWPEVLAEAEAAVEDAHRAVIEAGGLYVVGTERHD
+SRRIDNQLRGRSGRQGDPGESRFYLSLTDELMRNFNPGVAQRIMNSPSIPDDMALEFGFVSKAIQNAQAQVEGRNAEQRK
+NVLQYDDVMNRQREAIYTDRRSILEGEDLQDRVRRFVEDAVGNIVDAATEEGHATDWDLDQLWRDLAELYPVGISQEDVL
+DEVGGRGRLKAEVLKRELVSDALLAYEDREAQVGSEALREAERRVVLATIGRRWQEHLYEMDYLKEGIGLRAMAQREPLV
+EYQREGYTMFQNMLAAIREDAVRTLFQAQISAAPAPTSLPGVKDARAVTMAPQISVEGIDAPQQPAQLRFTGPSEDGQSA
+VTRSGTDSGATVAAGTNRRSRRQAERRGRRG--
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000952.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000952.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8435d03506e27bac3359689712a2158cc2af4641
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000952.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01435
+------------------------------------------------------------
+--------------------------------------MIAVACVEVETGRRALRDLSAW
+LSPEVLDKMTRRMDLLGLAEQDRPRARSAAAGVSRAPAAAPRPVGARVCEVAPGRVEASA
+TVLCDGRARAFALRLERRISRWKVTSVEIG
+>KBS0714_MOLHKGIG_01465
+----------------------------MTTLA-------TRPR-----AASDRRTADTL
+LHGPAHSPAVLPRGEEIARRARTEQGREELRRVRSLAAVIAVACVEVETGRRALRDLSAW
+LSPEVLDKLTRRMELLGAVAPTGPGRRPSAAVPPRTPKSAPRPVGARVCEVAPGRVEASA
+TVLWEGRARAFALRLERRLSRWKVTSVEIG
+>KD337_NAFOICDF_01338
+MTHSVRADRTMIRTSADRPAHRPAQEDPMTTLAPALAHGPTRPRPVSRTAPSRRDTESAL
+LRGPARRMSAVPTGEDLVRRAEQEDDREELRRLRSLAAVVAVACVETEAGRRPVRDLAGW
+LAPETYEKMCRRVDLLERT-----GTRPPS-------GSAPRPVGARVCAVRPGAVEASA
+TVLVAGRARAVALRIERRLSRWKVTHLEIG
+>SA211_MHAAABBN_01197
+----------------------------MTALA-------TRPR-----TASARRTADTL
+LHGPAHSPAVLPRGEEIARRARTEQGREELRRVRSLAAVIAVACVEVETGRRALRDLSAW
+LSPEVLDKLTRRMELLGAVAPTGPGRRPSAAVPPRTPASAPRPVGARVCEVAPGRVEASA
+TVLWEGRARAFALRLERRLSRWKVTSVEIG
+>TT9_LFPAFLNI_01415
+----------------------------MTTLA-------TRPR-----AASDRRTADTL
+LHGPAHSPAVLPRGEEIARRARTEQGREELRRVRSLAAVIAVACVEVETGRRALRDLSAW
+LSPEVLDKLTRRMELLGAVAPTGPGRRPSAAVPPRTPASAPRPVGARVCEVAPGRVEASA
+TVLWEGRARAFALRLERRLSRWKVTSVEIG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000955.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000955.fa
new file mode 100644
index 0000000000000000000000000000000000000000..52c02398b16f1ac37bdd71c171a6dba67e8c2f16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000955.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01438
+MQRFLTLTDVAETLNISGQAARALIRSGELQAIQVGGRGQWRIEESWLQEYVDRQREATR
+ARVQEWAEADA-KSR
+>KBS0714_MOLHKGIG_01462
+MQRFLTLTDVAETLNISGQAARALVRSGELQAIQVGGRGQWRIEVSWLEDYVERQKEVTR
+ARVREWTEADA-KAR
+>KD337_NAFOICDF_01341
+MPQFLTLTDVAEVLNVSVGQARTLVRTGQLQAIQVGGRGQWRIEAGWLDEYVERQRELTR
+SRVAERTREDAGHGA
+>SA211_MHAAABBN_01194
+MQRFLTLTDVAETLNISGQAARALVRSGELQAIQVGGRGQWRIEVSWLEDYVERQKEVTR
+ARVREWTETDA-QAR
+>TT9_LFPAFLNI_01412
+MQRFLTLTDVAETLNISGQAARALVRSGELQAIQVGGRGQWRIEVSWLEDYVERQKEVTR
+ARVREWTETDA-KAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000958.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000958.fa
new file mode 100644
index 0000000000000000000000000000000000000000..27b56f489a32e3c05c41193d9d875478512a68e7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000958.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01441
+MVSSLAQDPLTSHPDLADEDRSWLQLLVGDWQLVADLALADLVLWCPAPRPDPAEGFVAVAQVRPFTAPTLFHRDIVGSR
+ARADLRAVVASTWSGGERPEGAGPVETPDGTLQVRLWPVVRRGRVVAVLSAHGDPNGRPSRSVIEENYIRTADSLLDMMQ
+HGRWPAPEESAGLWAGGTPRVGDGLVVLGPDSVARFTSPNAVSALRRLGIGATLEGHRLTDVLAGTDAARQPSEEGTWAV
+LTGLRAGRREVQSRGASLTVRSVPLLGPDGWHGALLLLRDVTELRRQEQRLVSKDATIREIHHRVKNNLQTVGSLLRMQA
+RRTSSPEADRALRQAMRRVDTIALVHQTLSEEIDGQVPVDDLLKRQFRLAVEVSGDGRPLEAAASGEFGELPSHVTTPLA
+LVLNELAANAVEHGTAPAGGRVELHAERELTPAGSVLVVSVTDGGSGVQDGWSPGE-FQPAADGAGLGLRIVQTMVEGDL
+RGTLRWERLPDGGTRVVLRIPTA
+>KBS0714_MOLHKGIG_01459
+MVSSLAQDPLTSHPDIGDEDRAWLQRLVGDWQLVADLALADLVLWCPVPRRDEAGGFVALAQVRPFTAPTLFHRDIVGSR
+ARADLRAVVGQTWHGGERAEGAGPVEAPGGTLQVRLWPVVRAGRVIAVVSAHADPNGRPARSVIEENYSRTASTLLDMMQ
+HGRWPAPEEPSGLWAGGTPRVGDGLVVLGPDSVAEFTSPNAVSALRRLGIASTLEGHRLTDVLASTEAARVPTDEGTWAV
+LTGLRAGRREVQSGGASLTVRSVPLLGPDGWQGALLLLRDVTELRRQEQRLLTKDATIREIHHRVKNNLQTVGSLLRMQA
+RRTSSPEAERALRQAMQRVDTIALVHQTLSEEIEDQVPVDGLLQRQFRLAVEVAGDGRPLQVAVTGEFGELPSHVTTPLA
+LVLNELAANAVEHGTAPGGGCVGLHADRESTPAGTVLVVSVTDGGPAAPDGWVPGE-SPRAGEGSGLGLRIVHSLVEGDL
+RGTLRWERSDDGGTRVVLRLPLT
+>KD337_NAFOICDF_01344
+MVSTIASDPLNTHPDLGAEDRAWLQQLVGDWQLIADLALADLVLWCPLPVEVDGTGHLAMAQVRPFTAPTLFHRDIVGSR
+ARADLRALVDRVWAAGAPADGTGPLVEPGATLKVRLWPVVRAGRVVGVVSAHEDPRTRPARSAVEDNYRTSADTLLDMVQ
+HGRWPNPEDPPAYWIGGTPRVGDGLVVLGDDSRATFTSPNAVSALRRLGLPTTLAGHSLTELLGGTEAARRPVEEGSWAM
+LNGQRAGRTEVQANGATLTVRSVPLRNRDGWCGALIMLRDVTELRRQEQRLISKDATIREIHHRVKNNLQTVGSLLRMQA
+RRSDSPETGRALRQAMQRVDTIALVHQTLSEQIDAQLSVDALMARQFRLAVEVAGDGRPLGTRVEGTFGELASHVVTSVA
+LVLNELATNAVEHGTGEEGGVVSLQAHREDTPAGDVLVFSVTDGAS-VEDG--PGEGFVPQPAPNGLGLRIVHSLVEGDL
+RGSIQWRRMPDGGTRVTVRLPVE
+>SA211_MHAAABBN_01191
+MVSSLAQDPLTSHPDIGDEDRAWLQRLVGDWQLVADLALADLVLWCPVPRRDEAGGFVALAQVRPFTAPTLFHRDIVGSR
+ARADLRAVVGQTWHGGERAEGAGPVEAPGGTLQVRLWPVVRAGRVIAVVSAHADPNGRPARSVIEENYSRTASTLLDMMQ
+HGRWPAPEEPSGLWAGGTPRVGDGLVVLGPDSVAEFTSPNAVSALRRLGIASTLEGHRLTDVLASTEAARVPTDEGTWAV
+LTGLRAGRREVQSGGASLTVRSVPLLGPDGWQGALLLLRDVTELRRQEQRLLTKDATIREIHHRVKNNLQTVGSLLRMQA
+RRTSSPEAERALRQAMQRVDTIALVHQTLSEEIEDQVPVDGLLQRQFRLAVEVAGDGRPLQVAVTGEFGELPSHVTTPLA
+LVLNELAANAVEHGTAPGGGCVGLHADRESTPAGTVLVVSVTDGGPAAPDGWVPGE-SPRAGEGSGLGLRIVHSLVEGDL
+RGTLRWERSDDGGTRVVLRLPLT
+>TT9_LFPAFLNI_01409
+MVSSLAQDPLTSHPDIGDEDRAWLQRLVGDWQLVADLALADLVLWCPVPRRDEAGGFVALAQVRPFTAPTLFHRDIVGSR
+ARADLRAVVGQTWHGGERAEGAGPVEAPGGTLQVRLWPVVRAGRVIAVVSAHADPNGRPARSVIEENYSRTASTLLDMMQ
+HGRWPAPEEPSGLWAGGTPRVGDGLVVLGPDSVAEFTSPNAVSALRRLGIASTLEGHRLTDVLASTEAARVPTDEGTWAV
+LTGLRAGRREVQSGGASLTVRSVPLLGPDGWQGALLLLRDVTELRRQEQRLLTKDATIREIHHRVKNNLQTVGSLLRMQA
+RRTSSPEAERALRQAMQRVDTIALVHQTLSEEIEDQVPVDGLLQRQFRLAVEVAGDGRPLQVAVTGEFGELPSHVTTPLA
+LVLNELAANAVEHGTAPGGGCVGLHADRESTPAGTVLVVSVTDGGPAAPDGWVPGE-SPRAGEGSGLGLRIVHSLVEGDL
+RGTLRWERSDDGGTRVVLRLPLT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000959.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000959.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9dde28983f8a18dd53e6556aabcfb63b5fcbb8e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000959.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01442
+MDWRSKAACLDKDPELFFPVGNTGPALLQIEEAKAVCRSCEVVDTCLKWAMESGQDSGVW
+GGMSEDERRAMKRRAARARRAS
+>KBS0714_MOLHKGIG_01458
+MDWRSKAACLDKDPELFFPVGNTGPALLQIEEAKAVCRSCEVVDTCLKWAMESGQDSGVW
+GGMSEDERRAMKRRAARARRAS
+>KD337_NAFOICDF_01345
+MDWRSKAACLDKDPELFFPVGNTGPALLQIEEAKAVCRTCEVIDTCLKWAMESGQDSGVW
+GGMSEDERRAMKRRAARARRAS
+>SA211_MHAAABBN_01190
+MDWRSKAACLDKDPELFFPVGNTGPALLQIEEAKAVCRSCEVVDTCLKWAMESGQDSGVW
+GGMSEDERRAMKRRAARARRAS
+>TT9_LFPAFLNI_01408
+MDWRSKAACLDKDPELFFPVGNTGPALLQIEEAKAVCRSCEVVDTCLKWAMESGQDSGVW
+GGMSEDERRAMKRRAARARRAS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000960.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000960.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0ffd06e5c7887593c26f934b2032fb6bdca4856f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000960.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01443
+MAQSRRPDPVDPREAPAAPAPEGPRTGGR-APVAALVVAAALALQAAALLWLAGDAIAHL
+GDGVLPAGARVMLIVIYVLLGLWILVTSVALLRGRAWSRGAATAVQLFGVLLSSRLLSVG
+EPVVGGVLLAVSGIALVTLFSRPVTAHLSQAAREPSAE------
+>KBS0714_MOLHKGIG_01457
+MAQSRRPDPVAPSESSGADATTVPPRPGRGLPVAVLVVAAALVLEAGALLWLAVDAVVHA
+ADGVLPAGARVMLVVIYALLTLWILATAVALLRGRAWSRGAAVAIQLFGVLLSSWLFSVD
+AAALGGPLLAVSGVALLTLFTTPVTRHLTPAPEASTDA------
+>KD337_NAFOICDF_01346
+M---------------SSSIPASPSGRRR-MPAQAVVVAGVLGLEALTLVWLAVDGVAHL
+GAGALPTAAGVFLVVVYVLLAAWVGAVCGGMVRGRRFSRGAAVAIQLFAVILSTWLMSIG
+APIAGGLLLVGSGAALLCLFSGAVQAHLAGPDAGRPDAGRPDVG
+>SA211_MHAAABBN_01189
+MAQSRRPDPVAPSESSGADATTVPPRPGRGLPVAVLVVAAALVLEAGALLWLAVDAVVHA
+ADGVLPAGARVMLVVIYALLTLWILATAVALLRGRAWSRGAVVAIQLFGVLLSSWLFSVD
+AAALGGPLLAVSGVALLTLFTTPVTRHLTPAPEASTDA------
+>TT9_LFPAFLNI_01407
+MAQSRRPDPVAPSESSGADATTVPPRPGRGLPVAVLVVAAALVLEAGALLWLAVDAVVHA
+ADGVLPAGARVMLVVIYALLTLWILATAVALLRGRAWSRGAVVAIQLFGVLLSSWLFSVD
+AAALGGPLLAVSGVALLTLFTTPVTRHLTPAPEASTDA------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000961.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000961.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d6b83b166db12bc3acfa2190ac2995d384a0f3a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000961.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01444
+--------MTDERQAHDANDQDSPAEVRDIHEVPAVEVITTTAVHLMTAAAVKCGLADSP
+DARELVDLDEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREASPFPDAPGK
+GPGEKFTGPVN
+>KBS0714_MOLHKGIG_01456
+MVYGKLTTMTDERQAQDATPMDAPAEIRDIHEVPAVEVITTTAVHLMTAAAVKCGLADSP
+DARELIDLDEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREASPFPDAPGK
+GPGEKFTGPVN
+>KD337_NAFOICDF_01347
+--------MTDQNQHQHAAGEDVPTEVREIHEVPAVEVITTTAVHLMTAAAVKVGLADSP
+DAREMTDLDEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREASPFPDAPGK
+GPGEKFTGPVN
+>SA211_MHAAABBN_01188
+--------------------MDAPAEIRDIHEVPAVEVITTTAVHLMTAAAVKCGLADSP
+DARELIDLDEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREASPFPDAPGK
+GPGEKFTGPVN
+>TT9_LFPAFLNI_01406
+MVYGKLTTMTDERQAQDATPMDAPAEIRDIHEVPAVEVITTTAVHLMTAAAVKCGLADSP
+DARELIDLDEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREASPFPDAPGK
+GPGEKFTGPVN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000962.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000962.fa
new file mode 100644
index 0000000000000000000000000000000000000000..77841076e905c3dd6d017845dcb3e820518b55cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000962.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01445
+M------------NPSSQ------------------------------------------
+----------------------------HRSSTISDPRINERIRVPEVRLVGPNGEQVGI
+VRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDFGKYKYEAAVKARESRKNQVNTVLKEV
+RFRLKIDKHDYETKTGHAKKFLSQGDKVKAIIQFRGREQQRPELGIKLLQQFAEDVAELG
+TVESQPRQDGRNMVMVIGPLRTKADARADQRKNSEDSHRERQGGGSRRDQAAREAKARAA
+EKAAANAAPVKNSVGDAFPEQLKAMAARTQESAPAAPAASAEPKQAPKAPAKPA---AQA
+APKQAPKAPAKPAAAAKPAA--KPAAAPKPAAASKPASSGKPAAPASAPKPAAKPMPAPP
+KPAAPRGGAAKPGPRA
+>KBS0714_MOLHKGIG_01455
+MHGPGAAKWRPLSHPRQQDVRFAPGRVAGSPVGTAAS------WRAART-EGPVRRDRVE
+ASVCVRAGEAFLVSEGPSGGRGVTRRLTQRSTTISDPRINERIRVPEVRLVGPNGEQVGI
+VRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDFGKYKYEAAVKARESRKNQVNTVLKEV
+RFRLKIDKHDYETKTGHAKKFLSQGDKVKAIIQFRGREQQRPELGIKLLQQFAEDVAELG
+TVESQPRQDGRNMVMVVGPLRTKADARADQRKNSAESHRERQGGGSRRDQAAREAKERAA
+QKAASDSAPVRNSVGDAFPEQLKAMAARTQENASAAP---AETTQAPKTPAPAAPRPAAA
+APAAKPASSATPASAPKPAATPKPQSSAAPAATPKPRSAAKPAAPSSAPKPAAKPMPAPP
+KPAAPRGGAPKPGPRA
+>KD337_NAFOICDF_01348
+M--------ESSSHPRQQDVRHGRAELPGHRVSAAVAPGSDDPWRPGGTAKGPI-RGRFE
+ASRLHPQGRP---SAWRAPGVRSHQRPANRSGTISDPRINERIRVPEVRLVGPNGEQVGI
+VRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDFGKYKYEAAVKARESRKKQVNTVLKEV
+RFRLKIDQHDYETKTGHAKKFLSQGDKVKAIIQFRGREQQRPELGIRLLQKFAEDVAELG
+TVESQPRQDGRNMVMVIGPLKAKAEAREEQRKSTEGTQRERKGGGSRRDQAAREAKAAAA
+EKAAANSAPVRNSIGDAFPEQLRSFAAQQTE----AP---AE--QAP-VPAPKAA-PAKA
+TPAKAP--------APKPAATPAPKP---PASAPKPPAAPKPAA---APKPAAKPMPAPP
+KPAAPK-GAPKPGPRG
+>SA211_MHAAABBN_01187
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------MEVAPTAKPPVCKLMDFGKYKYEAAVKARESRKNQVNTVLKEV
+RFRLKIDKHDYETKTGHAKKFLSQGDKVKAIIQFRGREQQRPELGIKLLQQFAEDVAELG
+TVESQPRQDGRNMVMVVGPLRTKADARADQRKNSAESHRERQGGGSRRDQAAREAKERAA
+QKAASDSAPVRNSVGDAFPEQLKAMAARTQENASAAP---AETTQAPKTPAPAAPRPAAA
+APAAKPASSATPASAPKPAATPKPQSSAAPAATPKPRSAAKPAAPSSAPKPAAKPMPAPP
+KPAAPRGGAPKSGPRA
+>TT9_LFPAFLNI_01405
+MHGPGAAKWRPLSHPRQQDVRFAPGRVAGSPVGTAAS------WRAART-EGPVRRDRVE
+ASVCVRAGEAFLVSEGPSGGRGVTRRLTQRSTTISDPRINERIRVPEVRLVGPNGEQVGI
+VRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDFGKYKYEAAVKARESRKNQVNTVLKEV
+RFRLKIDKHDYETKTGHAKKFLSQGDKVKAIIQFRGREQQRPELGIKLLQQFAEDVAELG
+TVESQPRQDGRNMVMVVGPLRTKADARADQRKNSAESHRERQGGGSRRDQAAREAKERAA
+QKAASDSAPVRNSVGDAFPEQLKAMAARTQENASAAP---AETKQAPKTPAPAAPR----
+-PATKPASSATPASSPKPAATPKPQSSAAPAATPKPRSAAKPAAPSSAPKPAAKPMPAPP
+KPAAPRGGAPKPGPRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000967.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000967.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dec2eb973c2305023b1d8ed0fb8ee7843f3ec930
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000967.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01451
+MRWEAQTLRSESGAQRAAAGTPAGSAALLPLSDLQRSVTTPEFAGVTFHEVLAKTALNAV
+PAASAMPFRWTVNPYRGCTHACRYCYARSTHAFLDLDAGEDFDRQIVVKVNVAQVLRAEL
+ARPTWGREAVALGTNTDPYQRAEGRYSLMPGIIEALADSGTPFSVLTKGTLLARDVPLLQ
+AASRSVPVQVSLSLAMLDPAVAAAVEPGTPSPAARLRLIERLAAAGADVTVMAMPLLPWL
+TDGDRDLDALMRALAAAGAARVMPGALHLRPGAKEWYLRWIRQEHPDLLAGYEQMYARSA
+YAPESYRRTLARAAGEAAARHGLTRGGAHGIRREDGPVARPVPRSTPVAVPAPA--AP--
+-------------AQPALF
+>KBS0714_MOLHKGIG_01448
+MRWEAQTLRSEGGAQRATAGTPAGSAALLPLSDLQRSVTTPEFAGVTFHEVLAKTALNSV
+PSASAMPFRWTVNPYRGCTHACRYCYARSTHTFLELDAGADFDRQIVVKVNVAEVLRAEL
+ARPTWGREAVALGTNTDPYQRAEGRYALMPGIIRALADSGTPFSVLTKGTLLARDVPLLQ
+AASRQVPVQVSLSLAMLDPAIAAAVEPGTPSPTARLRLIERLAAAGADVTVMAMPLLPWL
+TDGDREIDALMRALADAGAARVMPGALHLRPGAKEWYLDWIRREHPDLLAGYEQMYARSA
+YAPESYRRMLTRMAGEAAARHGLARGGAHGIRREDGPPARRRPASRP---SAPA------
+-------------AQPALF
+>KD337_NAFOICDF_01355
+MRWEAQTLRTGGGAQRPGAGTPAGSPATLPLPGLQRIVSPPEFAGVTFHEVLARSALNKV
+PASSAMPFRWTVNPYRGCTHACVYCYARGTHRYLDLGPGEDFDRQIVVKTNAPEVLRAEL
+SRPGWTREPVALGTNTDPYQRAEGRYRLMPGIITALADTGTPFSILTKGTLLGRDAPALQ
+AAAAQTSVQVGLSLALLDPSLAAAVEPGTPSPAARLRLISRLAEAGVEVSVMAMPLLPWL
+TDSDRQLDRLMAALADAGAHSVLAGTLHLRPGAREWFLGWIDREHPHLAADYRRMYARSA
+YAPQAYRRVVSQAAREAAARHGLRHGGAHTITREDGPGPRGGASAPL---SAPAGTTGAE
+QADTAADAVRPVIAQPTLF
+>SA211_MHAAABBN_01180
+MRWEAQTLRSEGGAQRATAGTPAGSAALLPLSDLQRSVTTPEFAGVTFHEVLAKTALNSV
+PSASAMPFRWTVNPYRGCTHACRYCYARSTHTFLELDAGADFDRQIVVKVNVAEVLRAEL
+ARPTWGREAVALGTNTDPYQRAEGRYALMPGIIRALADSGTPFSVLTKGTLLARDVPLLQ
+AASRQVPVQVSLSLAMLDPAIAAAVEPGTPSPTARLRLIERLAAAGADVTVMAMPLLPWL
+TDGDREIDALMRALADAGAARVMPGALHLRPGAKEWYLDWIRREHPDLLAGYEQMYARSA
+YAPESYRRMLTRMAGEAAARHGLARGGAHGIRREDGPPARRRPASRP---SAPA------
+-------------AQPALF
+>TT9_LFPAFLNI_01398
+MRWEAQTLRSEGGAQRATAGTPAGSAALLPLSDLQRSVTTPEFAGVTFHEVLAKTALNSV
+PSASAMPFRWTVNPYRGCTHACRYCYARSTHTFLELDAGADFDRQIVVKVNVAEVLRAEL
+ARPTWGREAVALGTNTDPYQRAEGRYALMPGIIRALADSGTPFSVLTKGTLLARDVPLLQ
+AASRQVPVQVSLSLAMLDPAIAAAVEPGTPSPTARLRLIERLAAAGADVTVMAMPLLPWL
+TDGDREIDALMRALADAGAARVMPGALHLRPGAKEWYLDWIRREHPDLLAGYEQMYARSA
+YAPESYRRMLTRMAGEAAARHGLARGGAHGIRREDGPPARRRPASRP---SAPA------
+-------------AQPALF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000968.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000968.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e1f4e15cbe5d9820fce775148bc92f318aa8f402
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000968.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01452
+-------------------------MTTPASASAVRVLLTGFEPFGGDGHNPSIVAARDA
+VALLAERGVAAEAVELPCAFAAAGPALAAALERTRPEAAVAVGLAGGTAAVRVERIAMNL
+QDARIPDNAGDQPVDRPVRAEGPAAHFATLPVKRAVEAVRAAGVPAEPSLSAGAFVCNHV
+LYALLDAPGTARAAGFVHVPWDLAHRPRPDAPALPAEDLARAVAEVALVALEGGADLDVP
+GGTLH
+>KBS0714_MOLHKGIG_01447
+MFESTRKRVRVRAWRGRRDAPTVVAMTSRAPAPAARVLLTGFEPFGGDVHNPSIAAARDA
+VGILADRGVTAEAVELPCAFGAAGPALTAALDRVRPEVAIAVGLAGGTATVRVERVAVNL
+QDARIPDNAGEQPVDRPVRADGPAALFATLPAKRAVAAIREAGVAAEPSLSAGAFVCNHV
+MYSLLDGPGTARAAGFIHVPWDTEHRPTPDTPALPAADLARAVAEAALTALAGGPDLDVP
+GGTLH
+>KD337_NAFOICDF_01356
+-------------------------MTDP-----VRVLLTGFEPFGGDDHNPSIEAARAA
+AAALTADGTPAVAVELPCVFAAAGPALAAALEAHRPEIAVAVGLAGGTAAVRVERVAVNL
+QDARIPDNAGDRPADRPVRSGGPAAHFATLPVKRAVAAVREAGVPAEPSLSAGSFVCNHV
+MYSLLDAPAPARAAGFVHVPWSREHAPTPQTPALPAADLARAVAAVARAALVEGPDLDVP
+GGALH
+>SA211_MHAAABBN_01179
+-------------------------MTSRAPAPAARVLLTGFEPFGGDVHNPSIAAARDA
+VGILADRGVTAEAVELPCAFGAAGSALTAALDRVRPEVAIAVGLAGGTAAVRVERVAVNL
+QDARIPDNAGDQPVDRPVRADGPAALFATLPAKRAVAAIRAAGVAAEPSLSAGAFVCNHV
+MYALLDAPGTARAAGFLHVPWDAEHRPTPDTPALPAADLARAVAEAALTALAGGPDLDVP
+GGTMH
+>TT9_LFPAFLNI_01397
+-------------------------MTSRAPAPAARVLLTGFEPFGGDVHNPSIAAARDA
+VGILADRGVTAEAVELPCAFGAAGPALTAALDRVRPEVAIAVGLAGGTATVRVERVAVNL
+QDARIPDNAGEQPVDRPVRADGPAALFATLPAKRAVAAIREAGVAAEPSLSAGAFVCNHV
+MYALLDAPGTARAAGFIHVPWDTEHRPTPDTPALPAADLARAVAEAALTALAGGPDLDVP
+GGTLH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000970.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000970.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1e33cb17928b6cfba86f422cb84cc2173d51c416
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000970.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01454
+MTPSPETGAEPTAPAAEISPVDAAAVDAAVQAALAAFDAATDLDELKAARLAHTGDRAPL
+TLANKGIGALPKERKAEAGKLMGDARGRLNKALAARTEVLEAEQAERILREETVDVTAAV
+RRRRVGARHPLSLTMDRVSEIFVGMGWEIAEGPELESEWFNFDSLNFAPDHPAREMQDTF
+FVEPSEAHLLLRTHTSPVQMRSLLERGAPTYVLCPGRTFRTDELDATHTPVFHQFEGLAV
+DRGLTMAHLRGTLEYFARQMFGEEAAIRLRPNFFPFTEPSAELDIWHPGAKGGPRWIEWG
+GCGMVHPNVLRAAGLDPEEFSGFAFGMGVERTLMFRNEVPDMRDMIEGDVRFSQHFGMEV
+>KBS0714_MOLHKGIG_01444
+MTPSPETGAEPTAPVAEISPVDAEAVEAAVQAALAAYEAAADLDELKAARLAHTGDRAPL
+TLANKAIGALPKERKAEAGKLMGAARGRLGKALAARTEVLEAEQAARILREETVDVTTAV
+RRRRVGARHPLSLTMDRVSEIFVGMGWEIAEGPELESEWFNFDSLNFAPDHPAREMQDTF
+FVDPAEAHLLLRTHTSPVQMRSLLERGAPTYVLCPGRTFRTDELDATHTPVFHQFEGLAV
+DKGLTMAHLRGTLEYFARQMFGAEAAIRLRPNFFPFTEPSAELDIWHPGAKGGPRWIEWG
+GCGMVHPNVLRAAGLDPEEYSGFAFGMGVERTLMFRNEVPDMHDMIEGDVRFSQHFGMEV
+>KD337_NAFOICDF_01362
+MTSSPETGASEDAP--QLSPVDGPAVDAAVAEALAAFEAAADLEELKAARLAHQGDRAPL
+TLANKAIGTLPKEQKAEAGKTMGAARSRIGKALAARTEVLEAEHAARMLAEETVDVTAAA
+ARRLPGARHPLSLLQERVSDIFVGMGWEIAEGPELEHDWFNFNALNFPPDHPAREMQDTF
+FVEPLESNLLLRTHTSPVQVRSMLERGAPVYVLCPGRTFRTDELDATHTPVFHQFEGLAV
+DRGLTMADLRGTLEYFARQMFGPEAEIRLRPNFFPFTEPSAEMDIWHPQAKGGPRWIEWG
+GCGMVHPNVLRSAGIDPEEFSGFAFGMGIERTLMFRNEVPDMRDMIEGDVRFSQHFGMEL
+>SA211_MHAAABBN_01176
+MTPSPETGAEPTAPVAEISPVDAEAVEAAVQAALAAYEAAADLDELKAARLAHTGDRAPL
+TLANKAIGALPKERKAEAGKLMGAARGRLGKALAARTEVLEAEQAARILREETVDVTTAV
+RRRRVGARHPLSLTMDRVSEIFVGMGWEIAEGPELESEWFNFDSLNFAPDHPAREMQDTF
+FVAPAEAHLLLRTHTSPVQMRSLLERGAPTYVLCPGRTFRTDELDATHTPVFHQFEGLAV
+DKGLTMAHLRGTLEYFARQMFGAEAAIRLRPNFFPFTEPSAELDIWHPGAKGGPRWIEWG
+GCGMVHPNVLRAAGLDPEEYSGFAFGMGVERTLMFRNEVPDMHDMIEGDVRFSQHFGMEV
+>TT9_LFPAFLNI_01394
+MTPSPETGAEPTAPVAEISPVDAEAVEAAVQAALAAYEAAADLDELKAARLAHTGDRAPL
+TLANKAIGALPKERKAEAGKLMGAARGRLGKALAARTEVLEAERAARILREETVDVTTAV
+RRRRVGARHPLSLTMDRVSEIFVGMGWEIAEGPELESEWFNFDSLNFAPDHPAREMQDTF
+FVAPAEAHLLLRTHTSPVQMRSLLERGAPTYVLCPGRTFRTDELDATHTPVFHQFEGLAV
+DKGLTMAHLRGTLEYFARQMFGAEAAIRLRPNFFPFTEPSAELDIWHPGAKGGPRWIEWG
+GCGMVHPNVLRAAGLDPEEYSGFAFGMGVERTLMFRNEVPDMHDMIEGDVRFSQHFGMEV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000971.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000971.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cb812fdb65266768cb60f6e43cae2dc328ee237c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000971.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_01455
+MRIPLDWLREFVPVPAEHRAEDVMADLVRVGLEEEDVHRPSDELRGPIVVGQVLSKEPEPQKNGKTINWCTVRVVPEGAE
+QTLTGEGIDPSGVQGVVCGAHNFEVGDKVVVTLPGAVLPGDFRISPRKTYGHVSAGMIASVRELGIGDD-HDGILVLSTL
+GLDPEPGTDALEVLDLQGEAAEINVTPDRGYAFSMRGVAREYAHATGVPFTDPAAALTPPAADDAGHPVRIADDAPIYGA
+PGATRFVARTVSGVDASRPTPPWMAARLRLAGIRSISLPVDISNYVMWELGQPLHFYDAQKLAGEIVVRRARAGETLRTL
+DDKERTLDPEDLLITDDSGPIGLAGVMGGLATEVTDATTTIVIESANFDPISIARTRRRHRLPSEASKRNERGVDWEIAD
+EAAERAVQLLVELAGGTAEPGVTDVGTRPELAVVEMAADFPTALVGVEYTADEVAETLRALGAQVEAAEAADGAAPRLRV
+TAPSWRTDLRIPEDLVEEVARLRGYDAIPSVVPVAPPGRGFTRRQAQRRRVSAALAAAGHTEVLAYPFVSAEQNRRFGVD
+SEEQGEALEMVALANPISSQYRYMRLSLLPGLVEIARRNLGRGFRDLALYEAGLVFLPG-TQLGSASIPPRAAHPAPEVL
+ADLEAGIPAQPWRVAGLYAGHDSAPGPDHAPRPVDWQDAVSGALAVADVLGVELAVRQGRHHAFHPGRVAELVVLGERGD
+QVVGVAGELHPQWLEAEDLPARTSVWELDLDALCAAAPPAVVAVPLSTYPMSTQDVALVVEEAVVAGDVRASLAEGAGEL
+LESVELFDVYRGPGVPEGSKSLAFSLRFRAPDRTLTAEEASEARAAATALAAQRHGAVQR
+>KBS0714_MOLHKGIG_01443
+MRIPLDWLREFVPVPAEHRAEDVMADLVRVGLEEEDVHRPAAELQGPIVVGQVLSKEPEPQKNGKTINWCSVRVVPEGAA
+QPLTGEGIEPSGVQGIVCGAHNFEVGDKVVVALPGAVLPGDFRISPRKTYGHVSAGMIASSTELGMGDDGTDGIIVLGDL
+GLDPEPGTDARDVLDLHGEAAEINVTPDRGYAFSMRGVAREYAHATGVPFTDPAAAVHPPAADDAGPAVRIDDDAPIHGE
+PGATRFVARTVSGVDATRPTPPWLAARLRLAGIRTISLPVDISNYVMWELGQPLHFYDADTLSGEIVVRRARAGETLTTL
+DGKERELDPEDLLITDDSGPIGLAGVMGGAATEVTDATTTIVVESANFDPVSIARTRRRHRLPSEASKRNERGVDWEIAD
+EAAERAVQLLVELAGGTAEPGVTDVGTRPQPAVVEMAADFPSALVGVAYTTDEVVETLRALGAEVAVAEAAADVAPRLTV
+TAPSWRTDLRIPEDLAEEVARLRGYDAIPSVVPVAPPGRGFTRRQAQRRRVSAALAAAGLTEVLAYPFVSEEQNRRFGAD
+SDAQGQALAMVALANPIASQYRYLRLSLLPGLVETARRNLGRGFRDLALYEMGLVFLPG-AQLGSATIPPRAVHPSAEVL
+ADLEAGIPAQPWHVAGLYAGHDSAPGPDHDPRPVDWQDAIAGALDVADVLGVELTVRQGRHHAFHPGRVAELVVVTEHGD
+RVVGVAGELHPQWLEAEDLPARTSVWELDLDALCAAAPEIVVAAPLSTFPVSTQDVALVVDEAVVAGDVRATLAEGAGEL
+LEAVELFDVYRGAGVPEGRKSLAFSLRFRAPDRTLTAEEVSEARAAATALAAQRHGAVQR
+>KD337_NAFOICDF_01363
+MRIPLDWLREFAQVPADATAEDVLADLVTVGLEEEDVHRPSDELTGPLVVGQVLTREPEPQKNGKTINWCSVRVVPEGAE
+QTLTGEGIDPSGVQGIVCGAHNFEVGDKVVVCLPGAVLPGDFRISPRSTYGHVSAGMMASARELGLGDD-HDGIIVLGDM
+GLDPEVGTDVVDLFHLREEAAEVNVTPDRSYAFSIRGIAREYAHATGTAFTDPAAAVTAPEANDAGPAVTLADGAGIYGV
+PGCDRFVARVVEGIDPAAATPPWMAARLRLAGIRPHSLAVDVSNYVMWELGQPLHFYDADRLTGGITVRRAAAGETLRTL
+DDKERTLDPEDLVIADESGAIGLAGVMGGAATEVSEGTTRVLIESAHFDAVSIARTRRRHRLPSEASKRNERGVDWEIAD
+EAAERAVQLLVELAGGTPAQGVTDVGTRPEPVVVELDPEYPARRIGVDYPRERVVELLTGLGASVE------DAGDLLQV
+TAPTWRHDLRIPEDLVEEVARLDGYANIPSTLPVAPPGRGLTRAQVHRRRVADTLAAAGLTEVLDYPFVSEGQNRLFGSA
+TPEEGAAQRMVRLANPISSEFGWMRTTLLPNLLETVRRNVSRGFKDVALFEVGAVFLPGDGALGSPSNEPIGVKPSAETL
+AELDAGIPAQPRHVAGAFAGHEAAPGAGFAPRAFDWQDPIAAALAVGRAVGVELTVVQGTHQAFHPGRTATLSLPD---G
+TAVGVAGELLPAWLEDADMPARTGAFELDLDAVLAAAADRVVARPLSTYPASQQDVALVVADDVVAGDVRATLAEGAGEL
+LEEVALFDVYAGKGVPEGHKSLAFSLRFRAPDRTLTADEASEAREAATALAAERHGAVQR
+>SA211_MHAAABBN_01175
+MRIPLDWLREFVPVPAEHRAEDVMADLVRVGLEEEDVHRPAAELQGPIVVGQVLSKEPEPQKNGKTINWCSVRVVPEGAA
+QPLTGEGIEPSGVQGIVCGAHNFEVGDKVVVTLPGAVLPGDFRISPRKTYGHVSAGMIASSTELGVGDDGTDGIIVLGDL
+GLDPEPGTDARDVLDLHGEAAEINVTPDRGYAFSMRGVAREYAHATGVPFTDPAAAVHPPAADDAGPAVRIDDDAPIHGE
+PGATRFVARTVSGVDATRPTPPWLAARLRLAGIRTISLPVDISNYVMWELGQPLHFYDADTLSGEIVVRRARAGETLTTL
+DGKERELDPEDLLITDDSGPIGLAGVMGGAATEVTDATTTIVVESANFDPVSIARTRRRHRLPSEASKRNERGVDWEIAD
+EAAERAVQLLVELAGGTAEPGVTDVGTRPQPAVVEMAADFPSALVGVAYTTDEVVETLRALGAEVAVAEAAADVAPRLTV
+TAPSWRTDLRIPEDLAEEVARLRGYDAIPSVVPVAPPGRGFTRRQAQRRRVSAALAAAGLTEVLAYPFVSEEQNRRFGAD
+SDAQGQALAMVALANPIASQYRYLRLSLLPGLVETARRNLGRGFRDLALYEMGLVFLPG-AQLGSATIPPRAVHPSAEVL
+ADLEAGIPAQPWHVAGLYAGHDSAPGPDHDPRPVDWQDAIAGALDVADVLGVELTVRQGRHHAFHPGRVAELVVVTEHGD
+RVVGVAGELHPQWLEAEDLPARTSVWELDLDALCAAAPEIVVAAPLSTFPVSTQDVALVVDEAVVAGDVRATLAEGAGEL
+LEAVELFDVYRGAGVPEGRKSLAFSLRFRAPDRTLTAEEVSEARAAATALAAQRHGAVQR
+>TT9_LFPAFLNI_01393
+MRIPLDWLREFVPVPAEHRAEDVMADLVRVGLEEEDVHRPAAELQGPIVVGQVLSKEPEPQKNGKTINWCSVRVVPEGAA
+QPLTGEGIEPSGVQGIVCGAHNFEVGDKVVVTLPGAVLPGDFRISPRKTYGHVSAGMIASSTELGMGDDGTDGIIVLGDL
+GLDPEPGTDARDVLDLHGEAAEINVTPDRGYAFSMRGVAREYAHATGVPFTDPAAAVHPPAADDAGPAVRIDDDAPIHGE
+PGATRFVARTVSGVDATRPTPPWLAARLRLAGIRTISLPVDISNYVMWELGQPLHFYDADTLSGEIVVRRARAGETLTTL
+DGKERELDPEDLLITDDSGPIGLAGVMGGAATEVTDATTTIVVESANFDPVSIARTRRRHRLPSEASKRNERGVDWEVAD
+EAAERAVQMLVELAGGTAEPGVTDVGTRPQPAVVEMAADFPSALVGVAYTTDEVVETLRALGAEVAVTEAADGAAPRLTV
+TAPSWRTDLRIPEDLAEEVARLRGYDAIPSVVPVAPPGRGFTRRQAQRRRVSAALAAAGLTEVLAYPFVSEEQNRRFGAD
+SDAQGQVPAMVALANPIASQYRHLRLSLLPGLVETARRNLGRGFRDLALYEMGLVFLPG-AQLGSATIPPRAVHPSPEVL
+ADLEAGIPAQPWHVAGLYAGHDSAPGPDHAPRPVDWQDAVAGALDVADVLGVELTVRQGRHHAFHPGRVAELVVVTEHGD
+RVVGVAGELHPQWLEAEDLPARMSVWELDLDALCAAAPETVVAAPLSTFPVSTQDVALVVDEAVVAGDVRATLAEGAGEL
+LEAVELFDVYRGAGVPEGRKSLAFSLRFRAPDRTLTAEEASEARAAATALAAQRHGAVQR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000972.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000972.fa
new file mode 100644
index 0000000000000000000000000000000000000000..818998a9228f0bb8d1aa9a94790b092c9709ef34
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000972.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01456
+------------------------------------------------------------
+-----------------------------------MPGGDGDGAEDAAGPDDGPAAAPGL
+GLDVERVDAP-------AFADRDA-LGEVGFSTAERAWVAALPRSERPAARARLWTRKEA
+LVKAAGTGFTGDPADVAALHPPPGVVLLDVAAGLPDGIVGSVALRRA-
+>KBS0714_MOLHKGIG_01442
+MSVATGPWGLTSAVPASAGAADAVSALLGQVRTALTAAWGVPVGPLGLRHACPRCGSAAH
+GVPAL----TGLPPGR---------VALVSFTRVRMPGTEDRARIGAWWAPARPADGLGL
+GVDVERADAA-------AFADEDG-LGGVGFSTAERARVRELPAPERPAARARLWTRKEA
+LVKAAGTGFTGDPAAVDALTVPADVVLVDLTDRLPGGLLGALALRGR-
+>KD337_NAFOICDF_01364
+M--TTAPTSPTRGIEVGAVGVSRTEG-TAQVLAALGTRLGLGPRALALAHSCPGCGATDH
+GAPALRRAGDGTTPGGAPGDDGGPVLPAVSLTHVDGPRP---VTVLAWCTPSVAGTAWGI
+GVDAEDPTAPQTLRAFAAGADGAAEIDAVAFAAEERAALAGLSPEGALAERVRLWTVKEA
+LVKARGTGLDRDPAEVRPQLGEAVVPLAD--PRLPPGVVGTVAWRPAS
+>SA211_MHAAABBN_01174
+MSVATGPWGLTSAVPASAGAADAVSALLGQVRTALTAAWGVPVGPLGLRHACPRCGSAAH
+GVPAL----TGLPPGR---------VALVSFTRVRMPGTEDRARIGAWWAPARPADGLGL
+GVDVERADAA-------AFADEDG-LGGVGFSTAERARVRELPAPERPAARARLWTRKEA
+LVKAAGTGFTGDPAAVDALTVPADVVLVDLTDRLPGGLLGALALRGR-
+>TT9_LFPAFLNI_01392
+MSAATGPWGLTSAVPASAGAADAVSALLGQVRTALTAAWGVPVGPLGLRHACAGCGSAAH
+GVPAL----TGLPPGR---------VALVSFTHVRMPGAEDRARIGAWWAPARPADGLGL
+GVDVERADAA-------AFADEDG-LGGVGFSTAERARVRELPAPERPAARARLWTRKEA
+LVKAAGTGFTGDPAAVDALTVPADVVLVDLTDRLPGGLLGALALRGR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000975.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000975.fa
new file mode 100644
index 0000000000000000000000000000000000000000..68f0293230e92b14ef4915ac573fe5fa1f54a42e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000975.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01460
+MTHTVAVSGASGYAGGEALRLLAGHPDVAVGAITAHSNAGERLGALQPHLHSLADRVLEE
+TTADVLAGHDVVILALPHGASGALAAQIAERSPETLVIDAGADHRLESAADWEAFYGSEH
+AGTWPYGLPELPGQRERLAGTRRIAVPGCYPTTSILALAPGFAAGLLEPQDVVIVAASGT
+SGAGKAAKPHLLGSEVMGGMSPYGVGGGHRHTPEIEQGLSQAAGERVQISFTPTLAPMAR
+GILATATARLRPGADPAAVRGAWERAYADERFVHLLPEGLWPATKSVLGSNHVQMQLAVD
+ERAGRVIVTAALDNLTKGTAGGAVQSMNIALGLPEQAGLEQQGVAP
+>KBS0714_MOLHKGIG_01438
+MTHTVAVSGASGYAGGEALRLLAGHPSVTVGAITAHSNAGERLGALQPHLHALADRVLAE
+TTAEVLAGHDVVILALPHGASGALAAEIAERSPDTLVIDAGADHRLESAADWEAFYGTAH
+AGTWPYGLPELPGQRERLAGTRRIAVPGCYPTTSILALAPGFAAGLLEPQDVVIVAASGT
+SGAGKALKPHLLGAEVMGGMSPYGVGGGHRHTPEIEQGLAQAAGEPVRVSFTPTLAPMPR
+GILATATARLRPGVAAADVRAAWAAAYGGERFVHLLPEGQWPTTKAVLGSNHVQLQLAVD
+ERAGRVIVCAVLDNLTKGTAGGAVQSMNIALGLPEQAGLEQQGVAP
+>KD337_NAFOICDF_01368
+MTFTVAVSGASGYAGGEVLRLLAGHPEVQIGAISAHSNAGERLGSLQPHLHALADRVLDD
+TTADVLAGHDVVVLALPHGASAAVAAELAERSPRTLVIDAGADHRLESAADWERFYGTDH
+AGTWPYGLPELPGQRERLAGATRIAVPGCYPTTSILALAPGFAAGLLETRDVVIVAASGT
+SGAGRAAKPHLLGSEVMGGMSPYGVGGGHRHTPEIEQGLAQAAGEPVQISFTPTLAPMPR
+GILATATARLKEGVTADRVRAAWEDAYGPERFVHLLPEGQWPTTKAVVGSNHVVMQLAVD
+PHAGRVIVTAALDNLTKGTAGGALQSMNIALGLPEQLGLEIQGVAP
+>SA211_MHAAABBN_01170
+MTHTVAVSGASGYAGGEALRLLAGHPSVTVGAITAHSNAGERLGALQPHLHALADRVLAE
+TTADVLAGHDVVILALPHEASGALAAEIAERSPDTLVIDAGADHRLESAADWEAFYGTAH
+AGTWPYGLPELPGQRERLAGTRRIAVPGCYPTTSILALAPGFAAGLLEPQDVVIVAASGT
+SGAGKALKPHLLGAEVMGGMSPYGVGGGHRHTPEIEQGLAQAAGEPVRVSFTPTLAPMSR
+GILATATARLRPGVAAADVRAAWAAAYGGERFVHLLPEGQWPTTKAVLGSNHVQLQLAVD
+ERAGRVIVCAALDNLTKGTAGGAVQSMNIALGLPEQAGLEQQGVAP
+>TT9_LFPAFLNI_01388
+MTHTVAVSGASGYAGGEALRLLAGHPSVTVGAITAHSNAGERLGALQPHLHALADRVLAE
+TTAEVLAGHDVVILALPHGASGALAAEIAERSPDTLVIDAGADHRLESAADWEAFYGTAH
+AGTWPYGLPELPGQRERLAGTRRIAVPGCYPTTSILALAPGFAAGLLEPQDVVIVAASGT
+SGAGKALKPHLLGAEVMGGMSPYGVGGGHRHTPEIEQGLAQAAGEPVRVSFTPTLAPMSR
+GILATATARLRPGVAAADVRDAWAEAYGGERFVHLLPEGQWPTTKAVLGSNHVQLQLAVD
+ERAGRVIVCAALDNLTKGTAGGAVQSMNIALGLPEQAGLEQQGVAP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000976.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000976.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bbaae6307bda029f6b855254d24efea41ff9339e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000976.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01461
+MSVTAAQGFRAAGVTAGLKASGTPDVAVVVNDGPRRAAAAVFTANRVAAAPVLWSRQAVS
+DGRADAVVLNSGGANAATGAPGFQDAHATAEHAAEALGVSSGDVLVCSTGLIGERLDRER
+LFAGVAAAAGALSADGGEDAAVAIKTTDTVAKTAQARGEGFIVGGMAKGAGMLAPGMATM
+LCVITTDADVPAAVLDAALKDAVRTTFNRVDSDGCMSTNDTVILLASGAAGVAPDPEAFA
+ATLHEVCADLSRQLVADAEGAAHDVAVRVHGAQTEDAAEAVARAVTRSNLFKAAIFGQDP
+NWGRVIAAVGTVPEEVAAFDPYALDVSFNGVQVCRGSGVGEDRALVDLSAREVLVEVDLH
+AGDAEATVWTNDLTHDYVHENSAYST
+>KBS0714_MOLHKGIG_01437
+MSVTAAQGFRAAGVTAGLKASGTPDVAVVVNQGPRDAAAAVLTENRVAAAPVVWTRRAVR
+DGRATAVVLNSGGANAATGAEGLEDARRTAEHAAAALGTAADDVLVCSTGLIGERLPMDT
+LTAGVAEAVAALSPDGGEDAAVAIKTTDTVAKTAVARGAGFTVGGMAKGAGMLAPGMATM
+LSVITTDADVPAPALDAALREAVRATFNRVDSDGCMSTNDTVILLASGASGTAPEPAAFA
+AALHEVCADLSRQLVADAEGARHDIAVRVVHAETEEAAEAVARAVGRSNLFKTAIFGQDP
+NWGRVIAAVGTVPESVAAFDPYALDVRFNGVQVCRASGVGEDRSRVDLTAREVLVEVDLH
+AGDAEATVWTNDLTHDYVHENSAYST
+>KD337_NAFOICDF_01369
+MSVTAAQGFRAAGVTAGLKPSGKPDVAVVVNDGPSHTAAGVFTTNRVAAAPVRWSRQVLT
+DGRADAVVLNSGGANAATGHAGFQDAHRTAEHAAEALGVSAGDVVVCSTGLIGERLPLDT
+LLAGVDAAAAGLAEDGGADAALAIMTTDTVPKEAQASGEGWTVGGMAKGAGMLAPGMATM
+LCVVTTDADLPAAALRAALEEAVRTTFNRVDSDGCMSTNDTVVLLASGASGVAPEPTQFG
+AALHAVCADLARQLVGDAEGAGHDVLIRVVNASDEDAGEAVARAVSRSNLLKTAIFGQDP
+NWGRVISAVGTVPEEVAPFDADALDVSFNGVQVCRAAGVGDSRAGVDLSGREVVIEIDLH
+AGDAVVELWTNDLTHDYVHENSAYST
+>SA211_MHAAABBN_01169
+MSVTAAQGFRAAGVTAGLKASGTPDVAVVVNEGPRDAAAAVLTENRVAAAPVVWTRRAVR
+DGRATAVVLNSGGANAATGAEGLEDARRPAEHAAAALGTSADDVLVCSTGLIGERLPMDT
+LTAGVAEAVAALSPDGGEDAAVAIKTTDTVAKTAVARGAGFTVGGMAKGAGMLAPGMATM
+LSVITTDADVPAPALDAALREAVRATFNRVDSDGCMSTNDTVILLASGASGTAPEPEAFA
+AALHEVCADLSRQLVADAEGARHDIAVRVVHAETEEAAEAVARAVGRSNLFKTAIFGQDP
+NWGRVIAAVGTVPESVAAFDPYALDVRFNGVQVCRASGVGEDRSRVDLSAREVLVEVDLH
+AGDAEATVWTNDLTHDYVHENSAYST
+>TT9_LFPAFLNI_01387
+MSVTAAQGFRAAGVTAGLKASGTPDVAVVVNEGPRRAAAAVLTENRVAAAPVVWTRRAVR
+DGRATAVVLNSGGANAATGAEGLADARRTAEHAAAALATAADDVLVCSTGLIGERLPMDT
+LTAGVSEAVAALSPDGGEDAAVAIKTTDTVAKTAVARGAGFTVGGMAKGAGMLAPGMATM
+LSVITTDADVPAPALDAALREAVRATFNRVDSDGCMSTNDTVILLASGASGTAPEPEAFA
+AALHEVCADLSRQLVADAEGARHDIAVRVVHAETEEAAEAVARAVGRSNLFKTAIFGQDP
+NWGRVIAAVGTVPESVAAFDPYALDVRFNGVQVCRASGVGEDRSRVDLTAREVLVEVDLH
+AGDAEATVWTNDLTHDYVHENSAYST
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000978.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000978.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a2178f820b4b1a2cffcf0df3140223f7a8426866
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000978.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01463
+M--------STTQDALLARYADSLTGVFGRPARVLVRGEGVHVWDADGRRYTDLLAGIAV
+NSLGHAHPAVVRAVREQIAGLGHVSNLFTSEPQIRLAEELLAVADAPAGSTVFFANSGTE
+ANEAAFKLARRHGGQDPSGSRTRVIALERAFHGRTMGALALTHKEAYRAPFEPLPGGVEH
+VPGGDVDALRAALAPGASGATVAAVVLEPVQGEAGVHGWPVGYLAQVRALTREAGALMIL
+DEVQSGMGRTGTWFGFQNPSVTGSDDPVLPDAFTLAKGLGGGVPIGALVCVGPEVSGLLS
+AGQHGTTFGGNPLATAAGLAVLETIRSEGLLEHVRAAGERAAKLLADLPEVAAVRAHGLW
+IGVDLAAPRGPVPDGGLAPAVVAAGLEAGWILNATGPDTLRLAPPLVIAAEDLERFVELL
+PALVAAATT--------EGDPS
+>KBS0714_MOLHKGIG_01435
+M--------STDQSALLERYHAALTGVFGRPTRVLVRGEGVHVWDADGRRYTDLLAGIAV
+NALGHGHPALVRAVSEQVATLGHVSNLFTSEPQIRLAERLLELAGAPAGSTVFFANSGTE
+ANEAAFKLARRHGADDPSGRRTRVIALERAFHGRTMGALALTHKEAYRAPFEPLPGGVKH
+VPGGDAAALRAALAPDDDGATVAAVILEPVQGEAGVHGWPAGYLAEVRAATREAGALMIL
+DEVQSGVGRTGTWFGFQNPAVTGAAEPVVPDAFTLAKGLGGGVPIGALVCVGPAVSGLLT
+AGQHGTTFGGNPLATAAGLAVLQTVEDEGLLGHVRAAGEAVAALLEDLPEVAAVRGHGLW
+IGVDLADPAGPAPAGGLAPAVVAAGLEAGWILNATGPSTLRLAPPLTVPVAELERFAAAL
+PGLVAAALTPA------EGDRP
+>KD337_NAFOICDF_01371
+MSTAPGTDPAAPQEELLARYAHALTGVFGAPARALVRGSGTSVWDADGREYTDLVAGIAV
+NSLGHAHPAVVEAVSRQVATLGHVSNLFTSEPQVRLAEALLDRAGLPEGSSVFFCNSGTE
+ANEAALKLARRHGTQDPTGRRTRVLALERAFHGRTMGALALTHKEAYRAPFEPLPGGVEF
+IAGGDAGALAAALAPDAEGRTVAAVVLEPVQGEAGVHGWPAAYLARVRDLTREAGALMIL
+DEVQSGVGRTGTWFAFQNPQVTGSGAPVVPDAFTLAKGLGGGVPIGALVSVGPQVSRLLA
+PGQHGTTFGGNPLATAAGLAVVETLEAEGLLDHVRTVGARVSERLETLAEVTAVRAYGLW
+IGVDLADDAAASPTGGLAPAVVRAGLDAGWILNATGPRTLRLAPPLNVEAADLDRFADAL
+PALVRAARAAAPTPHAPKEETA
+>SA211_MHAAABBN_01167
+M--------STDQSALLKRYHAALTGVFGRPTRVLVRGEGVHVWDADGRRYTDLLAGIAV
+NALGHGHPALVRAVSEQVATLGHVSNLFTSEPQIRLAERLLELAGAPAGSTVFFANSGTE
+ANEAAFKLARRHGADDPSGRRTRVIALERAFHGRTMGALALTHKEAYRAPFEPLPGGVEH
+VPGGDAAALRAALAPDDDGATVAAVILEPVQGEAGVHGWPAGYLAEVRAATREAGALMIL
+DEVQSGVGRTGTWFGFQNPAVTGAAEPVVPDAFTLAKGLGGGVPIGALVCVGPAVSGLLT
+AGQHGTTFGGNPLATAAGLAVLQTVEDEGLLGHVRAAGEAVAALLEDLPEVAAVRGHGLW
+IGVDLADPAGPAPAGGLAPAVVAAGLEAGWILNATGPSTLRLAPPLTVPVAELERFAAAL
+PGLVAAALTPA------EGDRP
+>TT9_LFPAFLNI_01385
+M--------STDQSALLERYHAALTGVFGRPTRVLVRGEGVHVWDADGRRYTDLLAGIAV
+NALGHGHPALVRAVSEQIATLGHVSNLFTSEPQIRLAERLLELAGVPAGSTVFFANSGTE
+ANEAAFKLARRHGADDPSGRRTRVIALERAFHGRTMGALALTHKEAYRAPFEPLPGGVEH
+VPGGDAAALRAALAPDDDGATVAAVILEPVQGEAGVHGWPAGYLAEVRAATREAGALMIL
+DEVQSGVGRTGTWFGFQNPAVTGAAEPVVPDAFTLAKGLGGGVPIGALVCVGPAVSRLLT
+AGQHGTTFGGNPLATAAGLAVLQTVEDEGLLGHVRAAGEAVAALLEDLPEVAAVRGHGLW
+IGVDLADPAGPVPAGGLAPAVVAAGLEAGWILNATGPSTLRLAPPLTVPVAELERFAAAL
+PGLVAAALTPA------EGDRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000979.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000979.fa
new file mode 100644
index 0000000000000000000000000000000000000000..897b1c3074fc01814e4f3ea869ef9fb0cf7c873a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000979.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01464
+MTPAP-TPAPAAVRHFLVDTDLTPGEQAEVLDLAAQMKTDRFAHRPLAGPRTGVVFFDKT
+STRTRVSFAAGIAELGGSPLIVNPGESQLGHKESVADTARVLERMVGIIVWRTFAQSGLE
+EMAAHSRVPVVNALSDDYHPCQILADLLTVREHLGGTQGRVLAYLGDAANNMAHSYLLGC
+ATAGMHVRIAGPAGHLPAEHVVAAARERAAETGGSVLVTTDAAEALDGADVVVTDTWVSM
+GQEDEKEARLALFRDYQVDAAAMARAGSDAIFLHCLPAYRGYEVSAEVIDGPQSVVFDEA
+ENRLHAQKALMAWLLYRSGLAEDPR
+>KBS0714_MOLHKGIG_01434
+MTPA------AAVRHFLVDTDLTPAEQAEVLDLAAQMKADRFRHRPLAGPRTGIVFFDKT
+STRTRVSFAAGIAELGGTPLIVNPGESQLGHKESVADTARVLERMVGVIVWRTFAQAGLE
+EMAAHSSVPVVNALSDDYHPCQILADLLTVREHLGGTAGRTLTYLGDAANNMAHSYLLGC
+ATAGMHVRVAGPEGHLPAEDVVAAARQRAAETGGSVLVTTDAAEALAGADVVVTDTWVSM
+GQEEEKEARLALFRDYQVDAAAMARAADDAIFLHCLPAYRGYEVTAEVIDGPRSVVFDEA
+ENRLHAQKALIAWLLYRSGLAEEPR
+>KD337_NAFOICDF_01372
+MTAAPGTDVP--VRHFLVDTDLSPAEQAEVLDLALEMKADRFRHRPLAGPQTGIVFFDKT
+STRTRVSFAAGIADLGGTPLIVNPGESQLGHKESIADTARVLERMVGVIVWRTYAQSGLE
+EMAAHSRVPVVNALSDDYHPCQLLADLLTVREHKGRTRGLTMAYLGDAANNMANSYLLGG
+VTAGMHVRVAGPEGFLPDPAVVRAAEERAGETGGSVLVTTDAAAALDGADVVVTDTWVSM
+GQEDEKEERLRLFADYRVDAAAMARAASDAVFLHCLPAYRGYEVTEDVIDGPQSVVFDEA
+ENRLHAQKALMAWLLYRSGLAQDPR
+>SA211_MHAAABBN_01166
+MTPA------AAVRHFLVDTDLTPAEQAEVLDLAAQMKADRFRHRPLAGPRTGIVFFDKT
+STRTRVSFAAGIAELGGTPLIVNPGESQLGHKESVADTARVLERMVGVIVWRTFAQAGLE
+EMAAHSSVPVVNALSDDYHPCQILADLLTVREHLGGTAGRNLTYLGDAANNMAHSYLLGC
+ATAGMHVRVAGPEGHLPAEDVVAAARQRAAETGGSVLVTTDAVEALAGADVVVTDTWVSM
+GQEEEKEARLALFRDYQVDAAAMARAADDAIFLHCLPAYRGYEVTAEVIDGPRSVVFDEA
+ENRLHAQKALIAWLLYRSGLAEEPR
+>TT9_LFPAFLNI_01384
+MTPA------AAVRHFLVDTDLTPAEQAEVLDLAAQMKADRFRHRPLAGPRTGIVFFDKT
+STRTRVSFAAGIAELGGTPLIVNPGESQLGHKESVADTARVLERMVGVIVWRTFAQAGLE
+EMAAHSSVPVVNALSDDYHPCQILADLLTVREHLGGTAGRNLTYLGDAANNMAHSYLLGC
+ATAGMHVRVAGPEGHLPAEDVVAAARQRAAETGGSVLVTTDAVEALAGADVVVTDTWVSM
+GQEEEKEARLALFRDYQVDAAAMARAADDAIFLHCLPAYRGYEVTAEVIDGPRSVVFDEA
+ENRLHAQKALIAWLLYRSGLAEEPR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000980.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000980.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6f2bc0236efed412711118505921d45f75734d6f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000980.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01465
+MAVPTTKTARQAAIREILATRGIRSQAELSDALGDRGLSVTQGTLSRDLVDLGAVRTRGP
+GGMVYALPAEGDDGALPGRGSDAQLSRLSSMARELLISAEPTENLVVLHTPPGAAQFLAS
+VIDQARVENVMGTIAGDDTILLITTGVSAAPVVAAHLLGLAG
+>KBS0714_MOLHKGIG_01433
+MAAPTTKIARQAAIREILATRGIRSQAELSDALGDRGLSVTQGTLSRDLVDLGAVRTRGP
+AGMVYALPAEGDDGAVPGRGSDAQLNRLASMARELLVSAEPTANLVVLRTPPGAAQFLAS
+VIDQARVEHVMGTIAGDDTILLITTGTTSAPAVAAHLLGLAG
+>KD337_NAFOICDF_01373
+MATPATKTARQAAIRDVLQTRAIRSQAELSDALAERGLSVTQGTLSRDLVDLGAVRLRGA
+EGMVYAVPADGEE-AVAGRSAESQTGRLASMARELLLSAEPTENLVVLRTPPGAAQFLAS
+VVDQARVEGIVGTIAGDDTVLLITAGTREAPAVAARLLGMAG
+>SA211_MHAAABBN_01165
+MAAPTTKIARQAAIREILATRGIRSQAELSDALGDRGLSVTQGTLSRDLVDLGAVRTRGP
+AGMVYALPAEGDDGAVPGRGSDAQLNRLASMARELLVSAEPTANLVVLRTPPGAAQFLAS
+VIDQARVEHVMGTIAGDDTILLITTGTTSAPAVAAHLLGLAG
+>TT9_LFPAFLNI_01383
+MAAPTTKIARQAAIREILATRGIRSQAELSDALGDRGLSVTQGTLSRDLVDLGAVRTRGP
+AGMVYALPAEGDDGAVPGRGSDAQLNRLASMARELLVSAEPTANLVVLRTPPGAAQFLAS
+VIDQARVEHVMGTIAGDDTILLITTGTTSAPAVAAHLLGLAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000981.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000981.fa
new file mode 100644
index 0000000000000000000000000000000000000000..44738212cc0e145575fb115fcfe1c7ab81682fb7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000981.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01467
+MDTMTLFTS--TRTRRTTASVAAGMTLMGAAAVGFSAPAQAATEETWDAIAFCESTNRWD
+INTGNGFYGGLQFTLSSWQGVGGQGYPHQASKAEQIKRAEMLQDLQGWGAWPKCAA--GL
+TQADADA-----TDAAPVAVERTSSVQRQAAAEQAAAEEAAAEQA---------------
+----------AAEEAAAEQAAAEQWAAEQAAAEQAAAERAEAKRAAAAEKAAAKKAAAAE
+RAAAHQ------------------AAAEQAVVAEAETIVVKAGDSLWKLAAEHEVEGGWT
+ALYEANKDTVSDAAMIYVGQELVLPQA
+>KBS0714_MOLHKGIG_01432
+MDTMTLFTTSATRSRRATASIVAGMTLAGAAAVGFSAPAQAATVDTWDRLAECESSGTWD
+INTGNGFYGGVQFTLSSWQAVGGEGYPHQASKAEQIKRAEILQDLQGWGAWPLCSQKLGL
+TQADADAGDVD---AAPVAVERTATVQRQSAADETAADQAAAEQAAADQA-----AAEQA
+AADQAAAERWAAKQAAADQAAAERWAAKQAAAEQAAADKAAAQRAAAAEKAAAQKAAAAE
+KAAAQKAAAAEKAAAQKAAAAEQAAAAEQAVVAEAETIVVKSGDSLWKLANEYEVEGGWT
+ALYEANKGAVSDAAVIYVGQELVLPQA
+>KD337_NAFOICDF_01374
+---MTFFTTS---SRRATATALTGMTLVGAAA-AFAAPAQAASVETWDKIAACESNGNWA
+INTGNGYYGGLQFSLTSWRGVGGTGYPHEASKAEQIKRAEILQDMQGWRAWPVCSVKAGL
+SGAD----------TAPDAYS-TTPVQRQS------------------------------
+--------------TQASASAAQDWAAEQSAAEQRAAEKAAAQRAAAAAHTPKSVLKAAE
+KANTENAT--------------ELAAAE-------DTVFVKPGDSLWKIAKTHKVAGGWK
+ALHEANKDIIEDASVIYVGQELVLPTA
+>SA211_MHAAABBN_01164
+MDTMTLFTTSATRSRRATASIVAGMTLAGAAAVGFSAPAQAATVDTWDRLAECESNGTWD
+INTGNGFYGGVQFTLSSWQAVGGEGYPHQASKAEQIKRAEILQDLQGWGAWPLCSQKLGL
+TQADADAGDVDATEAAPVAVERTATVQRQSAADEAAAEQAAAEQAAADQAAAERWAAEQA
+AADQAAAERWAAEQAAAEQAAAERWAAKQAAAEQAAADKAAAQRAAAAEKAAAQKAAAAE
+KPAAQKAAAAEKAAAQKAAAAEQAAAAEQAVVAEAETIVVKSGDSLWKLANEYEVEGGWT
+ALYEANKGAVSDAAVIYVGQELVLPQA
+>TT9_LFPAFLNI_01382
+MDTMTLFTTSATRSRRATASIVAGMTLAGAAAVGFSALAQAATVDTWDRLAECESNGTWD
+INTGNGFYGGVQFTLSSWQAVGGEGYPHQASKAEQIKRAEILQDLQGWGAWPLCSQKLGL
+TQADADAGDVDATEAAPVAVERTATVQRQSAADEAAAEQAAAEQAAADQAAAERWAAEQA
+AADQAAAERWAAEQAAADQAAAERWAAEQAAAEQAAADKAAAQRAAAAEKA---------
+--AAQKAAAAEKAAAQKAAAAEQAAAAEQAVVAEAETIVVKSGDSLWKLANEYEVEGGWT
+ALYEANKGAVSDAAVIYVGQELVLPQA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000983.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000983.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0fbe67ec8f7b5c384c99c7ef152faa29ef7826a8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000983.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_01469
+MTENPEARHGTNEGALWGGRFAGGPSEALAALSKSTHFDWRLAPYDIAGSRAHARVLHAA
+GLLGAEDLEGMIAALDRLETDVRSGAYAPADSDEDVHGSLERGLIERAGPELGGRLRAGR
+SRNDQVATLGRMFLRDHARIIARGLVATVDALLSQVQAHPYAPMPGRTHLQHAQPVLLSH
+HLLAHAWAFARDLQRLVDWDARTAVSPYGSGALAGSSLGLDPEAVAAELGFDSAVWNSID
+GTASRDVYAEFAWVAAMVGVDLSRISEEVIFWATKEAGFVKLHDAYSTGSSIMPQKKNPD
+VAELARGKSGRLIGDLAGLLATLKGMPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIA
+TLEFETERMAELAPQGFALATDVAEWLVRQGVPFREAHELSGEAVKAAEARGVELWDLTD
+EEYAAISPALTPQVREVLSTEGSLNSRDAQGGTAPAAVAAQVEALERTLEPLRRWAQTPG
+SVVDAR
+>KBS0714_MOLHKGIG_01430
+MTENTDARHGTNEGALWGGRFAGGPSEALAALSKSTHFDWRLAPYDIAGSRAHARVLHTA
+GLLSADDLDGMIAALDRLEADVRSGAYTPAASDEDVHGSLERGLIERAGPELGGRLRAGR
+SRNDQVATLGRMFLRDHARIIARGVIATVDALLDQARAHPHAPMPGRTHLQHAQPVLLSH
+HLLAHAWAFARDLQRLVDWDARAAVSPYGSGALAGSSLGLDPNAVATELGFESAVWNSID
+GTAARDVYAEFAWVAAMVGVDLSRISEEVIFWATKEAGFVTLHDAYSTGSSIMPQKKNPD
+VAELARGKSGRLIGDLTGLLATLKGMPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIA
+TLEFQTERMAELAPQGFALATDVAEWLVRQGVPFREAHELSGEAVKAAEARGVELWDLTD
+DEYAAISPALTPQVREVLSTEGSLASRDAQGGTAPTAVAAQIGALEDALEPLRRWADTPG
+SVVDAR
+>KD337_NAFOICDF_01376
+MSENSTPRHGTNEGALWGGRFAGGPSEALAALSKSTHFDWRLAPYDIAGSRAHARVLHTA
+GLLTADELAGMIDALDRLEADVRSGAYAPAESDEDVHGSLERGLIERAGAELGGKLRAGR
+SRNDQVATLGRMFLRDHARVVARGVLATVDALVEQAEAHPFAPMPGRTHLQHAQPVLLSH
+HLLAHAWAFTRDLQRLVDWDARAAVSPYGSGALAGSTLGLDPNAVAAELGFDSAVWNSID
+GTAARDVYAEFAWVAGMIGVDLSRISEEVIFWATKEAGFVRLHDSYSTGSSIMPQKKNPD
+VAELARGKAGRLIGDLAGLMATLKGLPLAYNRDLQEDKEPVFDAVDTLELLLPAVSGMIA
+TLSFNTERMAALAPQGFALATDIAEWLVRQGVPFRVAHELSGEAVQVAESRGVELWDLTD
+EEYAGISAHLTPAVREVLSTEGSLNARRGQGGTAPEAVAEQLAALKAALEPLRAFAASAG
+SVVDAR
+>SA211_MHAAABBN_01162
+MTENTDARHGTNEGALWGGRFAGGPSEALAALSKSTHFDWRLAPYDIAGSRAHARVLHTA
+GLLSADDLDGMIAALDRLEADVRSGAYTPAASDEDVHGSLERGLIERAGPELGGRLRAGR
+SRNDQVATLGRMFLRDHARIIARGVIATVDALLDQARAHPYAPMPGRTHLQHAQPVLLSH
+HLLAHAWAFARDLQRLVDWDARAAVSPYGSGALAGSSLGLDPNAVAAELGFESAVWNSID
+GTAARDVYAEFAWVAAMVGVDLSRISEEVIFWATKEAGFVRLHDAYSTGSSIMPQKKNPD
+VAELARGKSGRLIGDLTGLLATLKGMPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIA
+TLEFQTERMAELAPQGFALATDVAEWLVRQGVPFREAHELSGEAVMAAEARGVELWDLTD
+DEYAAISPALTPQVREVLSTEGSLASRDAQGGTAPTAVAAQIGALEDALAPLRRWADTPG
+SVVDAR
+>TT9_LFPAFLNI_01380
+MTENTDARHGTNEGALWGGRFAGGPSEALAALSKSTHFDWRLAPYDIAGSRAHARVLHTA
+GLLSADDLDGMIAALDRLEADVRSGAYTPAASDEDVHGSLERGLIERAGPELGGRLRAGR
+SRNDQVATLGRMFLRDHARIIARGVIATVDALLDQARAHPYAPMPGRTHLQHAQPVLLSH
+HLLAHAWAFARDLQRLVDWDARAAVSPYGSGALAGSSLGLDPNAVATELGFESAVWNSID
+GTAARDVYAEFAWVAAMVGVDLSRISEEVIFWATKEAGFVTLHDAYSTGSSIMPQKKNPD
+VAELARGKSGRLIGDLTGLLATLKGMPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIA
+TLEFQTERMAELAPQGFALATDVAEWLVRQGVPFREAHELSGEAVKAAEARGVELWDLTD
+DEYAAISPALTPQVREVLSTEGSLASRDAQGGTAPTAVAAQIGALEDALAPLRRWADTPG
+SVVDAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000984.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000984.fa
new file mode 100644
index 0000000000000000000000000000000000000000..26123c9e9f56813998bf58dbb24a0cd311bf6c9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000984.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01470
+MTDAVSVRQSELELERARVAERYARLDALREEKERQLAAVRRTGLEGSLQNHSERDAFASLYEDRLAQLLAVDDRLVFGR
+LDLDPERAGDPDEERYIGRIGLTTEEHERLLVDWRAAEAGAFYQATAAHRGRVRRRRHLMLRGREVRDLEDDVLDPDLLG
+QEGVRADAQGALLAAVTARRTGRMGDIVATIQAEQDEVIRAPLAGAVVVQGGPGTGKTAVALHRAAYLLYTHRERLARSG
+VLIVGPSTAFMRYIERVLPSLGETGVVMASLGTLMPGVQAGPERDLDAAAVKGRLEMAQVIAHAVAQRQRLLAQPRRLMI
+EGTAVKLKPAAVRRARDRARATGKPHNEARVTFVKILVRELAEKLSKKLEKSSGAPVQRDLLLEDVRTSRDVRVALNLCW
+MPLTPQKLVGDLLTREHLLRAAAPWLSDGEVGALLRPADAPWTEADVPLLDEAAELLGRLEAPAKGGESAAQHERNLENA
+RASLENMHQTLADMGVDGVVDAEQLAAANEARAVRRTTAETAAHDRTWTYGHVVVDEAQELSPMQWRLLARRCPMKSFTI
+VGDIAQSSRRDAAGSWASVLEPEFGDRWRLEELTVNYRSPARVMRWASQVAQAAGLEVSRPRAVREGEHAPRLTVRPGAD
+LVALTLDAVAGERDRVPEGLVAVITAAAHAPELLAALRERWGRARVDTAPLPGVEIVVATPWETKGLEFDAVVLAAPERL
+VDDARGVVGDLYVAMTRATQSLSVVSTAAVAALPAGLADPPA
+>KBS0714_MOLHKGIG_01429
+MTDTVSVRQSELDLERGRVAERYARLDALREEKERQLAAVRRTGPQGSLQNHSERDAFASLYEDRLAQLYAVDDRLVFGR
+LDLDAEREGGADEQRYIGRIGLTTEDHERLLVDWRAAEAGAFYQATAAHRGRVRRRRHLMLRGREVRDLEDDILDPTLLG
+EDGVRADAQGALLAAVTARRTGRMGDIVATIQAEQDEVIRAPLPGAVVVQGGPGTGKTAVALHRAAYLLYTHRERLARSG
+VLIVGPSTAFMRYIERVLPSLGETGVVMSSLGTLMPGVRAVPERDLDAAAVKGRLDMVDAVAHAVAQRQRLLVEPRRLMI
+DGTAVKLKPAMVRRARDKARATRKPHNEARVTFVKILVRELAEKLRKKLEKSSGTPVQRDLLLEDVRTSRDVRIALNLCW
+MPLTPEKLIGDLLTREDLLRAAAPWLSDAEVGALLRPADAPWTEADVPLLDEAAELLGRLDTPGRGGESAAQHERNLENA
+RASLENMHQTLADLGVDGVVDAEQLAAANEARGVRRTTAETAAHDRTWTYGHVVVDEAQELSPMQWRLLARRCPMKSFTI
+VGDIAQSSRRDAAGSWASVLAPEFGDRWRLEELTVNYRSPARVMRWAAQVARAAGLEVSHPRAVREGDHRPRLVTEPGGD
+VAALALDAVEAERDRVPEALTAVIAPAERTGELLTALRERWGEAAVDTAPLPGVEIVVATPWETKGLEFDTVVLVLPERI
+VADARGVVGDLYVAMTRATQSLSVVAGTDAAALPAGLADVPE
+>KD337_NAFOICDF_01377
+MTDTVSSRQAELELERERVAVRYARLDALRAEKEEQLARVRRSGLQGSVQNHSERDAFASLYEDRLAQLYAVDERLVFGR
+LDLDADDAGDV-EQRYIGRIGLTDEGQERLLVDWRAQEAGAFYQATAARRLGVGRRRHLLLRGREVRDFEDDVLDPSLIA
+EGAAGAQSQGALLAAVTARRTGRMGDIVATIQAEQDEVIRADTSGALVVQGGPGTGKTAVALHRAAYLLYTHRDRLAKSG
+VLVVGPSNAFMRYIERVLPSLGETGVVMASLGTLMPGVQAGPDRSARAAELKGRLEMADVVAAAVAQRQRLIPETRRLEI
+EGTVVKLKPAMVRRARDRARATGKPHNEARTTFVKILVRELAEKLRKKLEKSSGVPVQRDLLLEDVRTARDVRVALNLCW
+MPLTPQKLVGDLLTKEHLLRAAAPGLSDGDVAALLRTDPDAWVESDVPLLDEAAELLGELEEPHRPGESEAQHRRNVENA
+QASLENMHQTLAELGVDGVVDAEQLAAANEVRAVRRTTAEQAAHDRTWTFGHVVVDEAQELSPMQWRLLARRCPLKSFTV
+VGDIAQASRRGGARSWKDVLGPEFGDRMRLEELTVNYRSPARITRWAAQVAQAAGLEISSPEAVREGEHEPLLTVEPGAD
+PTRLAQRVVEAERGRVGDGLVAVIVPADDAAEHLTHLQDRWG-SLVDRAPAPGVEVVVVTARETKGLEFDAVVLVSPERI
+VADADGVVGDLYVAMTRCTQSISVVSGAAEEELPAGLMPVPA
+>SA211_MHAAABBN_01161
+MTDTVSVRQSELDLERGRVAERYARLDALREEKERQLAAVRRTGPQGSLQNHSERDAFASLYEDRLAQLYAVDDRLVFGR
+LDLDAEREGGADEQRYIGRIGLTTEDHERLLVDWRAAEAGAFYQATAAHRGRVRRRRHLMLRGREVRDLEDDILDPTLLG
+EDGVRADAQGALLAAVTARRTGRMGDIVATIQAEQDEVIRAPLPGAVVVQGGPGTGKTAVALHRAAYLLYTHRERLARSG
+VLIVGPSTAFMRYIERVLPSLGETGVVMSSLGTLMPGVRAVPERDLDAAAVKGRLDMVDAVAHAVAQRQRLLVEPRRLMI
+DGTAVKLKPAMVRRARDKARATRKPHNEARVTFVKILVRELAEKLRKKLEKSSGTPVQRDLLLEDVRTSRDVRIALNLCW
+MPLTPEKLIGDLLTREDLLRAAAPWLSDVEVGALLRPADAPWTEADVPLLDEAAELLGRLETPGRGGESAAQHERNLENA
+RASLENMHQTLADLGVDGVVDAEQLAAANETRGVRRTTAETAAHDRTWTYGHVVVDEAQELSPMQWRLLARRCPMKSFTI
+VGDIAQSSRRDAAGSWASVLAPEFGDRWRLEELTVNYRSPARVMRWAAQVARAAGLEVSHPRAVREGDHRPRLVTEPGGD
+VAALALEAVEVERDRVPEALTAVIAPAGRTGELLTVLRERWGEAAVDTAPLPGVEIVVATPWETKGLEFDTVVLVSPERI
+VADARGVVGDLYVAMTRATQSLSVVAGTDAAALPAGLADVPE
+>TT9_LFPAFLNI_01379
+MTDTVSVRQSELDLERGRVAERYARLDALREEKERQLAAVRRTGPQGSLQNHSERDAFASLYEDRLAQLYAVDDRLVFGR
+LDLDAEREGGADEQRYIGRIGLTTEDHERLLVDWRAAEAGAFYQATAAHRGRVRRRRHLMLRGREVRDLEDDILDPTLLG
+EDGVRADAQGALLAAVTARRTGRMGDIVATIQAEQDEVIRAPLPGAVVVQGGPGTGKTAVALHRAAYLLYTHRERLARSG
+VLIVGPSTAFMRYIERVLPSLGETGVVMSSLGTLMPGVRAVPERDLDAAAVKGRLDMVDAVAHAVAQRQRLLVEPRRLMI
+DGTAVKLKPAMVRRARDKARATRKPHNEARVTFVKILVRELAEKLRKKLEKSSGTPVQRDLLLEDVRTSRDVRIALNLCW
+MPLTPEKLIGDLLTREDLLRAAAPWLSDAEVGTLLRPADAPWTEADVPLLDEAAELLGRLETPGRGGEFAAQHERNLENA
+RASLENMHQTLADLGVDGVVDAEQLAAANEARGVRRTTAETAAHDRTWTYGHVVVDEAQELSPMQWRLLARRCPMKSFTI
+VGDIAQSSRRDAAGSWASVLAPEFGDRWRLEELTVNYRSPARVMRWAAQVARAAGLEVSHPRAVREGDHRPRLVTEPGGD
+VAALALDAVEVERDRVPEALTAVIAPAGRTGELLTVLRERWGEAAVDTAPLPGVEIVVATPWETKGLEFDTVVLVSPERI
+VADARGVVGDLYVAMTRATQSLSVVAGTDAAALPAGLADVPE
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000987.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000987.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1d968a87ebb0ffa9a9c4d79b3612f7d4c3981065
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000987.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01476
+----MSPTLPRGHDGLLCDLDGVVYAGGGAVPGAVETLTALAERGVPVGFVTNNASRAPE
+SVAEHLRSLGVPARPEQVFGSAPAGVDLLEETLGAR----TGRVLVVGSDYLRQVVRDRG
+FEVVAASQDRPDAVIQGFDPGVGWAELAQAAYAVNAGAAWVATNLDASIPRAEGIAPGNG
+ALVGAVGQATGTAPAAAGKPEPLLFRTAARALGLTRPLVVGDRLDTDIRGGNAAGFDTVL
+VLTGIDTRENAGSAPEADRPTWIVEDLPALLSEPDGQAGTADGRRG
+>KBS0714_MOLHKGIG_01423
+----MSTTFFDGHDGLLCDLDGVVYAGDGAIAGAVETLSTLQERGVPVGFVTNNASRAPE
+SVAEHLRTLGVPAEAGQVFGSAPAGVDLLEETLGRR----TGRVLVVGSAYLRAVVEERG
+YEVVASAAQCPDAVIQGFDPGLGWADLAEAAYAVRAGATWVATNLDTSIPRAEGIAPGNG
+ALVEAVGRATGTAPVAAGKPEPRLFRTAADALGLARPLVVGDRLDTDIRGGNAAGFDTVL
+VLTGIDTRETAAAAPGPDRPTWVRAHLPALLA--GGAEASADPRRG
+>KD337_NAFOICDF_01384
+MTDPAASTFFGGHDGLLCDLDGVVYAGGEAIPGAVETVSALAERGVPVGFVTNNASRPPE
+AVAEQLRRFGLEVSPSHVFGSAPVGVDLLEERLTAAGHEGPARVLVVGSVHLADLVAARG
+HHVVETAAERPDAVLQGFDPRVDWSRLAEAAYAVNAGAAWVATNLDLSIPRAEGVAPGNG
+ALALAVTQATGVIPVAAGKPEPRLFHTAAAALGLQAPLMVGDRLDTDIRGGNAAGMETVL
+VLTGVGSRHAAGEAPEEDRPTWIVDDMTALLGEP------AEAARG
+>SA211_MHAAABBN_01154
+----MSATFFAGHDGLLCDLDGVVYAGGGAIAGAVETLSTLQERGVPVGFVTNNASRAPE
+SVAEHLRTLGVPAQAGQVFGSAPAGVDLLEETLGRR----TGRVLVVGSAYLRAVVEERG
+YEVVASAAQRPDAVIQGFDPGLGWADLAEAAYAVRAGATWVATNLDTSIPRAEGIAPGNG
+ALVEAVGRATGTAPVAAGKPEPRLFRTAAEALGLARPLVVGDRLDTDIRGGNAAGFDTVL
+VLTGIDTRETAAAAPGPDRPTWVRAHLPALLA--GGAEAFADPRRG
+>TT9_LFPAFLNI_01373
+----MSATFFAGHDGLLCDLDGVVYAGGGAIAGAVETLSTLQERGVPVGFVTNNASRAPE
+SVAEHLRTLGVPAQAGQVFGSAPAGVDLLEETLGRR----TGRVLVVGSAYLRAVVEERG
+YEVVASAAQRPDAVIQGFDPGLGWADLAEAAYAVRAGATWVATNLDTSIPRAEGIAPGNG
+ALVEAVGRATGTAPVAAGKPEPRLFRTAAEALGLARPLVVGDRLDTDIRGGNAAGFDTVL
+VLTGIDTRETAAAAPGPDRPTWVRAHLPALLA--GGAEAFADPRRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000988.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000988.fa
new file mode 100644
index 0000000000000000000000000000000000000000..db906c0a8292dbc0eda83128380ec2453724bf32
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000988.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01477
+MAEAVRADVALAARGLARSRTEASALIRAGQVLVDGRPVRRASERVAPTASLTLADDGPR
+WVSRAAHKLVSALEAFPDVAVRGRRALDAGASTGGFTQVLLEGGAARVAAVDVGHGQLVD
+LVRTDPRVLVREGLNVRDLTVQDVEGEVDLVVSDLSFISLRLVMDALAGVCRPGADLLLM
+VKPQFEVGRAALPRTGVVTDPAARRDVVAAVAAAALDSGLELRGLARSGLPGQDGNVEFF
+LRLRRPAADAAGAPGTGLDDDAPAAEAVAAAWTAAAEVDWA
+>KBS0714_MOLHKGIG_01422
+MAETARADVALAARGLARSRTEGAALIRAGQVLLDGRPVRRPADRVAADATLRLRDPGPR
+YVSRAAHKLVSALEAFPDVGVAGRRALDAGASTGGFTQVLLERGAERVAAVDVGHNQLAP
+PVRADPRVLVREGLNIRDLTAEDIDGPVDLVVSDLSFISLRLVLAPLASVCRPGAELLLM
+VKPQFEVGRRALPRSGVVTDPDARRHAVVGVTAAALGAGLAPRGLARSGLAGQDGNAEFF
+LRLRRPDATAADNPAGG-TSPAPPAGERAAGWVRGAHIDWS
+>KD337_NAFOICDF_01385
+MGEARRADVALAADGLARSRTEAAALVKEGVVLVDGTPVRRPSQPVASGAVLSLLDQGPR
+WVSRAAHKLVSALEAFP-VPVAGRRALDAGASTGGFTQVLLERGAARVAAVDVGHGQLVQ
+ELRADPRVLVREGLNVRDLTATDVEGSVDLVVSDLSFISLRLVLDALAGVCRPDADLLLM
+VKPQFEVGRAALPRTGVVTDPRARRSAVEGVVAAALGTGLAARGVARSGLPGQDGNVEFF
+LHLRAPAAPRDGGAVAG-DADEDERRRRAAALVAAADVDWS
+>SA211_MHAAABBN_01153
+MAETARADVALAARGLARSRTEGAALIRAGQVLLDGRPVRRPSDRVAADATLRLRDPGPR
+YVSRAAHKLVSALEAFPDVAVAGRRALDAGASTGGFTQVLLERGAERVAAVDVGHDQLAP
+PVQADPRVLVREGLNVRDLRAEDIDGPVDLVVSDLSFISLRLVLAPLAGVCRPGAELLLM
+VKPQFEVGRRALPRSGVVTDPDARRDAVAGVAAAALGAGLAPRGLTRSGLAGQDGNAEFF
+LRLHRPDATAADDPAGR-TSPATPADERAAGWVRGAHIDWS
+>TT9_LFPAFLNI_01372
+MAETARADVALAARGLARSRTEGAALIRAGQVLLDGRPVRRPSDRVAADATLRLRDPGPR
+YVSRAAHKLVSALEAFPDVAVAGRQALDAGASTGGFTQVLLERGAERVAAVDVGHDQLAP
+PVRADPRVLVREGLNVRDLRAEDIDGPVDLVVSDLSFISLRLVLAPLAGVCRPGAELLLM
+VKPQFEVGRRALPRSGVVTDPDARRDAVAGVAAAALGAGLAPRGLTRSDLAGQDGNAEFF
+LRLHRPDATAADDPAGR-TSPATPADERAAGWVRGAHIDWS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000990.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000990.fa
new file mode 100644
index 0000000000000000000000000000000000000000..df99e0492ac2a7d133a53ea96840641eaa9ddd60
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000990.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01479
+MIEHLRISGLGVIGEATVDLDPGLTVVTGETGAGKTMVVTALGLLLGARADAGAVRRGAARAVVDAGVRLPEAHAALALA
+EDAGAVLDEADDGVRELVLSRSVTASGEGTRSRAAAGGRTVPVGLLAEIGATLVAVHGQNDQVRLQGAEAQRRALDAFGG
+AELAASLRAYRADHAAVSAARRERDELTAHRQERAREAEALQRSLEEIDLAEPLAGEDAELRELIRRLEDVEELRAASGE
+AHARLAGAEMDALEETPGAVSLVEGARQAVLAAPGDDPALAAAAERLAEAAVVLTDIAADLARYTADLDTDAASDLDAAQ
+SRLAELTRLQRLYGPELEDVIGWAETQRPRLDELQGDSGRLEELEGELERLESALRERAAALTALRTAAAGRLEEAVTQE
+LHALFMPDASFHVDLAPVGGDGLGPHGAEDVALALRPHAGVEPRPLGRGASGGELSRVMLALEVVLAATDPVPTFVFDEV
+DAGVGGEAAVRIGARLARLARHVQVIAVTHLPQVAAYADRHVRVEKNSDPAAGVTTSDVVTLSAEERVEELARMLAGHGD
+SAAAREHARELLEASARERG
+>KBS0714_MOLHKGIG_01420
+MIDHLRISGLGVIGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGARADAGAVRRGSSRAVVDAGVRVTADHAALRLA
+QEAGAVVDEGDNGTHDLVLSRSVTASGDGTRSRATAGGRSVPVGLLSEIGATLVAVHGQNDQVRLQGADAQRHALDAFGG
+AELAAALRAYRADHAAWTAARREREELTAHRQERAREAEALQRSLEEIDLAEPREGEDEELRALIRRLEDVEELRAASGE
+AHARLAGPDVDAMDETPGAVSLVEAARQAVLAAPGDDPDLAAAAARLAEAAVVLTDIAGDLARYTADLDADAASDLDAAQ
+SRLAELTRLQRLYGPELADVIDWARTQRPRLDELQGDSGRLEELEAEVDRLDAALRERAATLTALRTAAAERLETAVTEE
+LHALFMPDASFHVGLTPVAGDGLGPYGAEDVTLALRPHAGVEPRPLGRGASGGELSRVMLALEVVLAATDPVPTFVFDEV
+DAGVGGEAAVRIGARLARLARHVQVIAVTHLPQVAAYADRHVRVEKNSDPAAGVTTSDVVTLTADERVEELARMLAGHGD
+SAAAREHARELLESSARERG
+>KD337_NAFOICDF_01387
+MIDWMQITGLGVIGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGRRADAGAVRRGSRRAAVDAGVRLPADHPALSLA
+VEAGAVLDDAGDGSADLVLSRSVTASGDGTRSRAGLGGRAVPVGVLAEVGSALVAVHGQNDQVRLQSAAAQRHALDAFGG
+PQLVAAAAAYRADHTAYVAARRERDLLVERQQERAREAEALQRGLEEIDRAEPEAGEDETLRALIRRLEDVEELRAAADG
+GHAHLAGPDIESGDDLPGAITLVESARAAVQAAPGDDPELAAAAGRLAEASVILGDIAADLARFSADLDGDAVSDLDAAQ
+TRLAELSRLQRLYGPELTDVLAWAEAQRPRLEELQGDSGRIDELEADLARLDASRRERAAELTTLRTAAAGRLEQAVTAE
+LHALFMPDASFHVSLVPLDDGDPGPHGAEDVALALRPHAGAEPRPLGRGASGGELSRVMLALEVVLAETDPVPTFVFDEV
+DAGVGGEAAVSIGARLARLARHVQVIAVTHLPQVAAYADRHVRVEKNSDPEAGVTTSDVVTLGQQERVDELARMLAGHGD
+SAAARAHARELLEASAAERA
+>SA211_MHAAABBN_01151
+MIDHLRISGLGVIGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGARADAGAVRRGSSRAVVDAGVRLPEAHAALALA
+EDAGAVLDEADEGVRELVLSRSVTASGEGTRSRAAAGGRTVPVGLLAEIGATLVAVHGQNDQVRLQGADAQRHALDAFGG
+AELAAALRAYRADHAAWTAARREREELTAHRQERAREAEALQRSLEEIDLAEPQEGEDEELRALIRRLEDVEELRAASGE
+AHARLAGPDVDTMDETPGAVSLVEAAQQAVLAAPGDDPELAAAAARLAEAAVVLTDIAGDLARYTADLDADAASDLDAAQ
+SRLAELTRLQRLYGPELADVIDWARTQRPRLDELQGDSGRLEELEAEVDRLDAALRERAATLTALRTAAAERLETAVTEE
+LHALFMPDASFHVGLTPVAGDGLGPYGAEDVTLALRPHAGVEPRPLGRGASGGELSRVMLALEVVLAATDPVPTFVFDEV
+DAGVGGEAAVRIGARLARLARHVQVIAVTHLPQVAAYADRHVRVEKNSDPAAGVTTSDVVTLTADERVEELARMLAGHGD
+SAAAREHARELLESSARERG
+>TT9_LFPAFLNI_01370
+MIDHLRISGLGVIGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGARADAGAVRRGSSRAVVDAGVRLPEAHAALALA
+EDAGAVLDEADEGVRELVLSRSVTASGEGTRSRAAAGGRTVPVGLLAEIGATLVAVHGQNDQVRLQGADAQRHALDAFGG
+AELAAALRAYRADHAAWTAARREREELTAHRQERAREAEALQRSLEEIDLAEPQEGEDEELRALIRRLEDVEELRAASGE
+AHARLAGPDVDAMDETPGAVSLVEAARQAVLAAPGDDPELAAAAARLAEAAVVLSDIAGDLARYTADLDADAASDLDAAQ
+SRLAELTRLQRLYGPELADVIDWARTQRPRLDELQGDSGRLEELEAEVDRLDAALRERAATLTALRTEAAERLETAVTEE
+LHALFMPDASFHVGLTPVAGDGLGPYGAEDVTLALRPHAGVEPRPLGRGASGGELSRVMLALEVVLAATDPVPTFVFDEV
+DAGVGGEAAVRIGARLARLARHVQVIAVTHLPQVAAYADRHVRVEKNSDPAAGVTTSDVVTLTADERVEELARMLAGHGD
+SAAAREHARELLESSARERG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000991.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000991.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a2da3195b02e3ba29087bef8736a243ec3123484
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000991.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01480
+MPEISACAGRSPLRDLHVPRPVKKSKTVYEGRVWDIARESFRMDPEHKGQDPLTRELMVH
+PGAVAVLAVRTQLSTVGPREQVALVRQYRHPVGMELWEVPAGLRDVDGEDLHQVAVRELA
+EEADLRAREWHTLVDYYTSPGGSTEAIRVFLARQVEVIPEAERHARTDEEAAMPLAWVGL
+DEVTDAVLDGRVHNPSTVVAILALCAHRAQGWRRLRPVDAPFVPDRHGPGADWPA
+>KBS0714_MOLHKGIG_01419
+MPEISASAGRSPLRDLHVPRPVKKSKTVYEGRVWDIARESFRLDPADKSREPLTRELMVH
+PGAVAILAVRTKLTTTGPREQVALVRQYRHPVGMELWEIPAGLRDVDGEDLHQVAVRELA
+EEADLRAREWHTLVDYYTTPGGSSEAIRVFLARQIEEIPDGERHTRQDEEAAMPLVWVGL
+DEVTDAVLDGRVHNPSTVVAVLALGAHRAQGWRRLRPVDAPFVPDRQAPGADWPA
+>KD337_NAFOICDF_01388
+MAEVPASAGRSPLRDLSLPRRVKKSKTVFEGRVWDIARESFRMDPDDKGQEPLTRELMVH
+PGAVAVLALRTHLTTAGPVEQVALVRQYRHPVGMELWEVPAGLRDVAGEPLVETARRELR
+EEADLEAAEWHTLADFFTTPGGSTEAIRVFLARQVSAVPEGARHEREGEEASMPLAWVNT
+DEVLDAVLDGRIHNPSTVVAVLALHAHRAQAWRRLRPPDAPFVPDRRGPGADRPA
+>SA211_MHAAABBN_01150
+MPEIPASAGRSPLRDLHVPRPVKKSKTVYEGRVWDIARESFRLDPADKSQDPLTRELMVH
+PGAVAILAVRTKLTTTGPREQVALVRQYRHPVGMELWEIPAGLRDVDGEDLHQVAVRELA
+EEADLRALEWHTLVDYYTTPGGSSEAIRVFLARQIEEIPDGERHTRQDEEAAMPLVWVGV
+DEVTDAVLDGRVHNPSTVVAILALCAHRAQGWRRLRPVDAPFVPDRHGPGADWPA
+>TT9_LFPAFLNI_01369
+MPEIPASAGRSPLRDLHVPRPVKKSKTVYEGRVWDIARESFRLDPADKSREPLTRELMVH
+PGAVAILAVRTKLTTTGPREQVALVRQYRHPVGMELWEIPAGLRDVDGEDLHQVAVRELA
+EEADLRAREWHTLVDYYTTPGGSSEAIRVFLARQIEEIPDGERHTRQDEEAAMPLVWVGV
+DEVTDAVLDGRVHNPSTVVAVLALGAHRAQGWRRLRPVDAPFVPDRQAPGADWSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000994.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000994.fa
new file mode 100644
index 0000000000000000000000000000000000000000..026b1c3b09667b2bd943893754e6a83f3b0c5eb5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000994.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01484
+MLYSTKTAEQKRVDLRAALAEGGAQQFPGAFTPLTAKLIQEKGFPGVYISGGVLANELGL
+PDVGLTTLTEVALRGGQIARLTDLPCLIDADTGFGEPMNVARTVQEFENAGLAGCHIEDQ
+FNPKRCGHLDGKNMVDLDTAVKRIAAAVDARRDPNFLIMARTDLRAVEGLDAAIARMKAL
+VEAGADAIFPEALKDIGEFETVCRELAPLGVPVLANMTEFGKSELFTRQQLADAGVAMVI
+YPVTLLRSAMGAAERVLDAIKDEGTQASQVDQMLTRARLYELVDYEGYNAFDTGIFNFDV
+PTLDIDENNANL
+>KBS0714_MOLHKGIG_01415
+MLYSTKTAEQKRIDLRETLKQGGAQQFPGAFTPLSAKLIQEKGFPGVYISGGVLANELGL
+PDVGLTTLTEVAVRGGQIARLTDLPCLIDADTGFGEPMNVARTVQEFENAGLAGCHIEDQ
+FNPKRCGHLDGKNMVELDTAVKRIAAAVHARRDPNFLIMARTDLRAVEGLDAAIARMKAL
+VEAGADAIFPEALKDIGEFETVCRELEPLGVPVLANMTEFGKSELFTRRQLADAGVAMVI
+YPVTLLRSAMGAAERVLNAIKEEGTQQSQVEQMLTRARLYELVDYEGYNAFDTGIFNFDV
+PTLDIGANHADL
+>KD337_NAFOICDF_01391
+MLYSKKTAAQKRIDLRETLKQGGAQQFPGAFTPLTAKLIQEKGFPGVYISGGVLANELGL
+PDVGLTTLTEVAVRGGQIARLTDLPCLIDADTGFGEPMNVARTVQEFEDAGLAGCHIEDQ
+FNPKRCGHLDGKNMVDLDTAVKRIAAAVDARRDPNFLIMARTDLRAVEGLDAAIARMKAL
+VEAGADAIFPEALKDIGEFETVCRELAPLGVPVLANMTEFGKSELFTRQQLADAGVAMVI
+YPVTLLRSAMGAAERVLDAIREEGTQQSQVDQMLTRARLYELVDYEGYNAFDTGIFNFDV
+PTLDIDSNNANL
+>SA211_MHAAABBN_01146
+MLYSTKTAEQKRIDLRQTLKQGGAQQFPGAFTPLTAKLIQEKGFPGVYISGGVLANELGL
+PDVGLTTLTEVAVRGGQIARLTDLPCLIDADTGFGEPMNVARTVQEFENAGLAGCHIEDQ
+FNPKRCGHLDGKNMVELDTAVKRIAAAVHARRDPNFLIMARTDLRAVEGLDAAIARMKAL
+VEAGADAIFPEALKDIGEFETVCRELEPLGVPVLANMTEFGKSELFTRRQLADAGVAMVI
+YPVTLLRSAMGAAERVLHAIKEEGTQQSQVEQMLTRARLYELVDYEGYNAFDTGIFNFDV
+PTLDIGANHADL
+>TT9_LFPAFLNI_01365
+MLYSTKTAEQKRIDLRQTLKQGGAQQFPGAFTPLTAKLIQEKGFPGVYISGGVLANELGL
+PDVGLTTLTEVAVRGGQIARLTDLPCLIDADTGFGEPMNVARTVQEFENAGLAGCHIEDQ
+FNPKRCGHLDGKNMVDLDTAVKRIAAAVDARRDPNFLIMARTDLRAVEGLDAAIARMKAL
+VEAGADAIFPEALKDIGEFETVCRELEPLGVPVLANMTEFGKSELFTRQQLADAGVAMVI
+YPVTLLRSAMGAAERVLDAIKEEGTQQSQVEQMLTRARLYELVDYEGYNAFDTGIFNFDV
+PTLDIGANHADL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000995.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000995.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a64077df6ccab3707b164497f73813b56a7ea4ee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0000995.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01485
+MKNHHVRVHRSEENLERKDQLAWKLAEVAVDDVEVLPEVEEMIVNRIIDNASVAVASLQRGPIVAARAQALSHPVSTGGA
+GATVFGVEQKVSPEWAAWANGVAVRELDYHDTFLAAEYSHPGDNIPPILAVAQHAGRSGKDLIRGIATGYEVQVDLVKSI
+CLHKHKIDHVAHIGPSASAGIGTLLGLDTETVFQAVGQGLHTTTATRQSRKGEISTWKAHAPAFAGKMAVEAADRAMRGQ
+TSPVPIYEGEDGVIAWMLDGPDASYEVPLPEAGEPKRGILDTYTKEHSAEYQAQAWIDLARKLNKEHPEATDPANVESVL
+IKTSHHTHYVIGSGANDPQKYDPTASRETLDHSIPYIFTVALQDGAWHHVDSYAPERAAREDTVALWHKVTTVEDPEWTR
+RYHSNDLTEKAFGGAVEITLTDGTVITDEIAVADAHPLGARPFAREQYIQKFRTLAEGIVTQEEQDRFLDAVQRVSELGP
+GELDQLNVTADPAFLSQADLDNAPKGLF
+>KBS0714_MOLHKGIG_01414
+MKNHHVRVHRSEENLERKDQLAWKLAEVAVDDVEVLPEVEEMIINRIIDNASVAVASLRRGPIVAARAQALSHPVSTGGE
+GASVFGVEQKVSPEWAAWANGVAVRELDYHDTFLAAEYSHPGDNIPPILAVAQHAGRSGKDLIRGIATGYEIQVDLVKSI
+NLYGHKIDHVAHIGPSASAGIGTLLGLDTETIFQAIGQGLHTTTATRQSRKGEISTWKAHAPAFAGKMAVEAVDRAMRGQ
+TSPVPIYEGEDGVIAWLLDGPDASYEVPLPEQGEPKRGILDTYTKEHSAEYQAQAWIDLARKLHREHPEATDPANVESVL
+IKTSHHTHYVIGSGANDPQKYDPTASRETLDHSIPYIFTVALQDGSWHHVDSYAPERAQREDTVALWHKVTTVEDPEWTR
+RYHSLDLAEKAFGGAVEITLKDGTVITDEIAVADAHPLGARPFAREQYIQKFRTLAEGIVSKEEQDRFLAAAERVAELQP
+GELDQLNILADPAFLSEADLAAAPKGLF
+>KD337_NAFOICDF_01392
+MKKHDVRVHPSADNLAREDQLAHKLAEVAVDPVEVLPEVEEMIINRIIDNASVAVASLKRGPIVAARAQALSHPVSTGGA
+GATVFGVDQKVSPEWAAWANGVAVRELDYHDTFLAEEYSHPGDNIPPILAVAQHAGRSGADLIRGIATGYEVQVDLVKSI
+CLHKHKIDHVAHIGPSASAGIGTLLGLDAETVFQAIGQGLHTTTATRQSRKGEISTWKAHAPAFAGKMAVEAADRAMRGQ
+TSPVPIYEGEDGVIAWMLDGKDAHYEVPLPEQGEPKRGILDTYTKEHSAEYQAQAWIDLARKLHSEHPEAMDPENVESVL
+IKTSHHTHYVIGSGANDPQKYDPTASRETLDHSVPYIFTVALQDGAWHHVDSYAPERAARPDTVALWHKVTTVEDPEWTR
+RYHSNDLSEKAFGGAVEITLTDGTVITDQIAVADAHPLGARPFAREQYIQKFRTLAEGVVTPEEQDRFLDAVQRLSELQA
+GELDQLNVLANPAFLSEADLAAAPKGLF
+>SA211_MHAAABBN_01145
+MKNHHVRVHRSEENLERKDQLAWKLAEVAVDDVEVLPEVEEMIINRIIDNASVAVASLKRGPIVAARAQALSHPVSTGGA
+GASVFGVEQKVSPEWAAWANGVAVRELDYHDTFLAAEYSHPGDNIPPILAVAQHTGRSGKDLIRGIATGYEIQVDLVKSI
+NLYGHKIDHVAHIGPSASAGIGTLLGLDTETIFQAIGQGLHTTTATRQSRKGEISTWKAHAPAFAGKMAVEAVDRAMRGQ
+TSPVPIYEGEDGVIAWLLDGPDASYEVPLPEQGEPKRGILDTYTKEHSAEYQAQAWIDLARKLHREHPEATDPANVESVL
+IKTSHHTHYVIGSGANDPQKYDPTASRETLDHSIPYIFTVALQDGSWHHVDSYAPERAQREDTVALWHRVTTVEDPEWTR
+RYHSLDLAEKAFGGAVEITLKDGTVITDEIAVADAHPLGARPFAREQYIQKFRTLAEGIVSKEEQDRFLAAAERVAELQP
+GELDQLNILADPAFLSEADLAAAPKGLF
+>TT9_LFPAFLNI_01364
+MKNHHVRVHRSEENLERKDQLAWKLAEVAVDDVEVLPEVEEMIINRIIDNASVAVASLKRGPIVAARAQALSHPVSTGGE
+GASVFGVAQKVSPEWAAWANGVAVRELDYHDTFLAAEYSHPGDNIPPILAVAQHAGRSGKDLIRGIATGYEIQVDLVKSI
+NLYGHKIDHVAHIGPSASAGIGTLLGLDTETIFQAIGQGLHTTTATRQSRKGEISTWKAHAPAFAGKMAVEAVDRAMRGQ
+TSPVPIYEGEDGVIAWLLDGPDASYEVPLPEQGEPKRGILDTYTKEHSAEYQAQAWIDLARKLHREHPEATDPANVESVL
+IKTSHHTHYVIGSGANDPQKYDPTASRETLDHSIPYIFTVALQDGSWHHVDSYAPERAQREDTVALWHKVTTVEDPEWTR
+RYHSLDLAEKAFGGAVEITLKDGAVITDEIAVADAHPLGARPFAREQYIQKFRTLAEGIVSKEEQDRFLAAAERVAELQP
+GELDQLNILADPAFLSEADLAAAPKGLF
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001000.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001000.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c24cf1f5a0f96175e097fcabdc151b3803e7461e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001000.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01491
+MTEHTRDDVATTPLVVAVDGPSGSGKSSVSKAVARRLGAAYLDTGAMYRAVAWHCLNEGVDLADADAVAAAAVAMELEQS
+TDPDVEAVRVGGTDVTEAIRGAEVTDTVSTVAVVIPVREELRRRQRETIAAAGRMVAEGRDITTVVAPDAHARVLLTASE
+AVRTARRSGQLAAAGEPGVDAGTLHRQGGRAGRPRRHRVHVRPPRRGRGARGLHRARLRADRGGRPGRRRGPGRHPGREG
+RPTMTDNPQHRSGDDEFVPAGEDQVAERLAAMTEEEAEARAASLRAGLADYELEDDDAALLDAWQLGPDEDLDAPVPPVL
+AIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDAKGIHRRVAEQAELAVDVADAV
+VFVVDATVGMTATDEAVVSMLRRKDRPVIVAANKVDDMVQEADAASLWSLGFGYPYPVSAVHGRGVADLLDAALEAMPEE
+SAHGGLVPRGGPRRIALVGRPNVGKSSLLNRLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRFVDTAGIRRRQHMAHGA
+DYYAALRTASALDRAEVAVVLLEAPSVISEQDVRILQMVLDSGRALVIAFNKWDQVDEDRRHQLEKEIERDLAHVAWAPR
+VNISAKTGWHKDRLVPALDTALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKFVLFTTGFLDP
+GYRRFIVRRLRETFGFEGTPLEIGMRVREKRGLAPLSAAAADDDGVPRARRGSTDPAPAGGRRRPTPSRGSSHGFLMFRA
+>KBS0714_MOLHKGIG_01404
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---MTENPQHRSGEDEFVPAGDDQVAERLAAMTEEEAEARAASLRAGLADYELEEDDAALLDAWQLGPDEDVDAPVPPVL
+AIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDAKGIHRRVAEQAELAVDVADAV
+VFVVDATVGMTATDEAVVSMLRRKDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALPEE
+SAHGGLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRFVDTAGIRRRQHMAHGA
+DYYASLRTASALDRAEVAVVLLEAPQVISEQDVRILQMVLDSGRALVIAFNKWDQVGEDRRLQLAKEIERDLAHVAWAPR
+VNISAKTGWHKDRLVPALDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKFVLFTTGFLDP
+GYRRFIVRRLRETFGFEGTPLEIGMRVREKRG-----------------------------RRR----------------
+>KD337_NAFOICDF_01403
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---MTENTPLTEGE-EYQPAGEDHLAERLAAISDEEADARAASLRAGLGDYELEEDDAALLADWDGDDEFDLDLPVPPVL
+AIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYEAEWNGRVFTVVDTGGWEHDAKGIHKRVADQAELAVDVADAV
+VFVVDATVGMTATDEAVVTMLRRKDRPVIVAANKVDDMVQEADAASLWSLGFGYPWPVSAVHGRGVADLLDAALEELPEE
+SAHGGLVPRGGPRRIALVGRPNVGKSSLLNKLAGADRVVVDDYAGTTRDPVDELVELGGRLWRFVDTAGIRRRQHMAHGA
+DYYASLRTASALDRAEVAVVLLEAPSVISEQDVRIVQMALESGRALVLAFNKWDQMDEDRRPQLEKEIERDLAHVAWAPR
+VNISALTGWHKDRLVPALDTALESWDRRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQASTRPPTFVLFTTGFLDP
+GYRRFIVRRLRETFGFEGTPIEIGMRIRERRG-----------------------------RKR----------------
+>SA211_MHAAABBN_01134
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---MTENPQHRSGEDEFVPAGDDQVAERLAAMTEEEAEARAASLRAGLEDYELEEDDAALLDAWQLGPDEDVDAPVPPVL
+AIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDAKGIHRRVAEQAELAVDVADAV
+VFVVDATVGMTATDEAVVSMLRRKDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALPEE
+SAHGGLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRFVDTAGIRRRQHMAHGA
+DYYASLRTASALDRAEVAVVLLEAPQVISEQDVRILQMVLDSGRALVIAFNKWDQVDEDRRLQLAKEIERDLAHVAWAPR
+VNISAKTGWHKDRLVPALDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKFVLFTTGFLDP
+GYRRFIVRRLRETFGFEGTPLEIGMRVREKRG-----------------------------SRR----------------
+>TT9_LFPAFLNI_01354
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---MTENPQHRSGEDEFVPAGDDQVAERLAAMTEEEAEARAASLRAGLEDYELEEDDAALLDAWQLGPDEDVDAPVPPVL
+AIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDAKGIHRRVAEQAELAVDVADAV
+VFVVDATVGMTATDEAVVSMLRRKDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALPEE
+SAHGGLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRFVDTAGIRRRQHMAHGA
+DYYASLRTASALDRAEVAVVLLEAPQVISEQDVRILQMVLDSGRALVIAFNKWDQVDEDRRLQLAKEIERDLAHVAWAPR
+VNISAKTGWHKDRLVPALDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKFVLFTTGFLDP
+GYRRFIVRRLRETFGFEGTPLEIGMRVREKRG-----------------------------RRR----------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001002.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001002.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f06e2142c1fe07533a2eb2f0a72e3c23e485243d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001002.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01511
+MHTPQNPPTGHEPAVEPSARVAAPTAAAPDPAAAPDWHGRPFLGQPGPLANLFSVEMWERFSFYGMQAMLVYYMSWTLAE
+GGLGIDVAVATGIVGAYGGMVYVFCILGGWIADRLLGSERTMFYSAVTIMLGHIALALVPGIPGLALGLILVAVGSGGLK
+ANAANLVGALYSQQDPKRDAGFSIFYMGVNIGALFGPLLTGLARDSWGFHFGFGLAAVGMAIGLVQYALTRKNLPSDVHR
+IPNPLPRSQYGRWVLIALAAVAVGVVLFLTGIVTVANLADAVVVLAAVAAIGIFAVLLTSKKVTEEERSRVKAFIPLFIG
+TAVFFALFQQQFTVIALYSENRLDRNLFGWEMPMEWVNSINPIFIIAFAPVFAALWTKLGPRQPGTPVKFGIGIVLIGLA
+FLLFIPVADVLAVPLLWLALILFVCTMGELLVSPVGLSLSTKVAPRSFPVMMVSLYNLSVALGTALAGSLAGSYSEENEV
+GYFGVIGAVTVGVGLLMLAIAKPVRRGMRGVL
+>KBS0714_MOLHKGIG_01381
+MENPQNPLAGRVPDVEPSARVAASTATRPDD-ATPDWRGRPFLGQPGPLANLFSVELWERFSFYGMQAMLVYYMSWTAAE
+GGLGIDPAVATGIVGAYGGMVYVFCILGGWVADRLLGSERTMFVSAVGIMLGHIALALVPGVPGLTLGLVLVAVGSGGLK
+ANATNLVGSLYSREDPKRDAGFSIFYMGVNIGALFGPLLTGLARDTMGFHVGFGLAAAGMAIGLTQYALTRKNLPTDVHR
+VPDPLPRSQYGRWGLIGLGMVAVVVALFLTDVITLDNLSDAVVVLAAVAAIAIFAVLLTSTKVSEEERSRVKAFIPLFIG
+TSVFFALFQQQFTVIALYSEHRLDRNLFGWLMPMEWVNSINPIFIIVFAPVFAALWTKLGTRQPATPVKFGIGIVLIGIA
+FLLFIPVADVAAVPLLWLTLILFVCTMGELLVSPVGLSLATKVAPRSFPVMMVSLYNLSVALGTALAGSLAGSYSEQNEV
+GYFGTIGAVTLGVGLIVLAIAKPVRRGMRGVL
+>KD337_NAFOICDF_01406
+M--THSPDSG--ASVAPDADLGAAQA------PAPDWHGRRFFGQPGPLANLFSVEMWERFSYYGMQAMLVYYMSWTAER
+GGLGIDEATATGIVGAYGGMVYVFCILGGWIADRLLGSERTMFFSAVGIMLGHIALALVPGVPGLILGLVLVAVGSGGLK
+ANAANLVGSLYAKGDQARDAGFSIFYMGVNLGGLVGPLLTGWARQTWGFHVGFGLAAVGMAIGLTQYALTRKNLPSTVHG
+VPDPLPRSQYGRWALIGLAGLAVVAVLLLTGVVNVGNLADAVVVLAALAAIAIFAVLLTSSKVSAEERSRVKAFIPLFIG
+TAVFFALFQQQFTVVALYSENRLDRTLFGTEIPMEWVSSINPIFIIAFAPVFAALWTRLGDRQPSTPVKFALGILLIGAA
+FLLFIPASGFLAVPLLWLTLILFVMTMGELMISPVGLSLSTKVAPAAFPVLMVALYNLSVALGTALAGSLAGSYTAENEA
+GYFGVIGGVTIAVGVVMLLLAPAVRRGMRGVR
+>SA211_MHAAABBN_01101
+MENPQNPLAGRVPDVEPSARVAASTATRPDD-ATPDWRGRPFLGQPGPLANLFSVELWERFSFYGMQAMLVYYMSWTAAE
+GGLGIDPAVATGIVGAYGGMVYVFCILGGWVADRLLGSERTMFVSAVGIMLGHIALALVPGVPGLTLGLVLVAVGSGGLK
+ANATNLVGSLYSREDPKRDAGFSIFYMGVNIGALFGPLLTGLARDTMGFHVGFGLAAAGMAIGLAQYALTRKNLPTDVHR
+VPDPLPRSQYGRWGLIGLGMVAVVVALFLTGVVTLGNLSDAVVVLAAVAAIAIFAVLLTSTKVTEEERSRVKAFIPLFIG
+TSVFFALFQQQFTVIALYSENRLDRNLFGWLMPMEWVNSINPIFIIVFAPVFAALWTKLGTRQPATPVKFGIGIVLIGIA
+FLLFIPVADVVAVPLLWLTLILFVCTMGELLVSPVGLSLATKVAPRSYPVMMVSLYNLSVALGTALAGSLAGSYSEENEV
+GYFGVIGAVTLGVGLLVLAIAKPVRRGMRGVL
+>TT9_LFPAFLNI_01336
+MENPQNPLAGRVPDVEPSARVAASTATRPDD-ATPDWRGRPFLGQPGPLANLFSVELWERFSFYGMQAMLVYYMSWTAAE
+GGLGIDPAVATGIVGAYGGMVYVFCILGGWVADRLLGSERTMFVSAVGIMLGHIALALVPGVPGLTLGLVLVAVGSGGLK
+ANATNLVGSLYSREDPKRDAGFSIFYMGVNIGALFGPLLTGLARDTMGFHVGFGLAAAGMAIGLTQYALTRKNLPTDVHR
+VPDPLPRSQYGRWGLIGLGMVAVVVALFLTDVITLDNLSDAVVVLAAVAAIAIFAVLLTSTKVSEEERSRVKAFIPLFIG
+TSVFFALFQQQFTVIALYSEHRLDRNLFGWLMPMEWVNSINPIFIIVFAPVFAALWTKLGTRQPATPVKFGIGIVLIGIA
+FLLFIPVADVAAVPLLWLTLILFVCTMGELLVSPVGLSLATKVAPRSFPVMMVSLYNLSVALGTALAGSLAGSYSEQNEV
+GYFGTIGAVTLGVGLIVLAIAKPVRRGMRGVL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001005.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001005.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ee60e34d99db3594500c060e2eede0bb81e70928
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001005.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01514
+MTEPQH-ADAGPRTRPAG-RLGIGEVVAALKSDFPGVSASKVRFLEDRGLVLPERTPAGY
+RRYRPEDVDRLRFVLTVQRDHFLPLKVIAAQLAALDRGEVPADLPGGVVAPGASDASRLG
+REVAAGRRGWTRSELAEESGAGEELLAELDQYSLLPADEDGAYSSHAMEVARAAVVLAGH
+GLEPRHLRPFRAAADRELGLVERAVAPLQARRDANMRPRVARSAQEIAQASLRLHSALVA
+EGLEQWDDGAVG
+>KBS0714_MOLHKGIG_01378
+MIDPRPLPDAVPTARPAG-RLGIGEVVAALEAEFPGVTASKVRFLEDRGLVLPERTPAGY
+RRFRPEDVDRLRFVLALQRDHFLPLKVIADHLAALDRGERPTGLPGTAAVPASSDAARLG
+REVAGGRRSWTRAELAAESGAGEELLAELDQYSLLPVDPDGGYPSHAMDVARAAVVLAGH
+GLEPRHLRPLRAAADRELGLVERAVAPLQARRDAGTRPRVARSAREIAQASLRLHAALVA
+VGLEQWDD----
+>KD337_NAFOICDF_01409
+MSAPHE-PSAAP--PPAGAALGIGDLVAALEPSFPGVSASKVRFLEDRGLVRPERTAAGY
+RRYRPADVDRIRLVLTLQRDRFLPLKVIREHLDALDRGERPEDL--GEAPAAAQEAVRLG
+HGIADPDRRWTRAELAREAEVPAPLVDELDQYALLPRAEDGLHPPAALGVVRAAGRLAAH
+GIEPRHLRPFRAAADRELGLVQSAVAPLATRRDAGTRERAARTAEEIATACLALHAALVR
+AGLESLDG----
+>SA211_MHAAABBN_01098
+MTDPRPRPDAVPTARPAG-RLGIGEVVASLEVEFPGVTASKVRFLEDRGLVLPERTSAGY
+RRFRPEDVDRLRFVLALQRDHFLPLKVIADHLAALDRGERPTGLPGTAAAPASSDAERLG
+REVAGGRRSWTRAELAAESGAGEELLAELDQYSLLPVDPDGGYPSHAMDVARAAVVLAGH
+GLEPRHLRPLRAAADRELGLVERAVAPLQARRDAGTRPRVARSAREIAQASLRLHAALVA
+VGLEQWDD----
+>TT9_LFPAFLNI_01333
+MTDPRPRPDAVPTARPAG-RLGIGEVVASLEVEFPGVTASKVRFLEERGLVLPERTSAGY
+RRFRPEDVDRLRFVLALQRDHFLPLKVIAEHLAALDRGERPTGLPGTAAAPASSDAERLG
+REVAGGRRSWTRAELAAESGAGEELLAELDQYSLLPVDPDGGYPSHAMDVARAAVVLAGH
+GLEPRHLRPLRAAADRELGLVERAVAPLQARRDAGTRPRVARSAREIAQASLRLHAALVA
+VGLEQWDD----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001009.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001009.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e5517b780a68cd4e8bc602e92a08563c86e39ddb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001009.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01518
+------------------------------MATSTEHHDLLIIGSGSGNSLVTEHWEGRSVAIADSGVFGGTCLNVGCIP
+TKMYAYPAGLAASAGAESERLGVGLEFTGADFPAIRDRIFQRIDAISEGGLRYRRDELEHTSVIQEEVRFVGPRRVRTAS
+GREVTADQVVIAAGSRPTLPRIPGVDLPSVHTSDTVMRLPRLPRRLLVIGGGFIACEFASIFAALGSEVIHVNRGHRLLK
+AHDLSVSTAFTEIAARQWDVRTGWTPAGVEPVADPDRAAQGWVRVRLDRAEGQEQTGTVEEVVEADAVLMAIGRTPNTDR
+LDVDAAGLDVTEDGVLATDRHQRVLSGGAPVEGVYALGDVANTWQLKHVANHEARVVAHNLEHPEDLRSAVLAPVAAAVF
+TRPQVAAVGLTVEQALAEHGADAITVKTQAFGDVAYGWAMEDSEGLCTVVAEKATGRILGGHILGHDAANLIQPLVTGMA
+FGIDAHRLARGQYWPHPALTEVVENALLGLDVPDSGLL
+>KBS0714_MOLHKGIG_01374
+MSPPPAGRPT-----GPDATASGPVPILGGMATTAEHHDLLIIGSGSGNSLVSEHWKGRSVVIADSGPFGGTCLNVGCIP
+TKMYAYPASLAALP-PEARSLGVGLEFTGADFPAIRDRIFTRIDGISRDGLRHRRDDLDYTSVIQEEVRFVGPRRVRTAS
+GREITADQVVVAAGSRPTLPEIPGLDLPSVHTSDTVMRLDRLPRRLLVVGGGFIACEFASVFAGLGTEVVQVNRGHRLLK
+QHDMSVSTTFTKIAARRWDLRTGWTPAGIEPVEDAERAADGWVRVRLDRAEGQEQTGIVEEAIEADAVLIAVGRTPNTDR
+LDPAAAGLDVTDDGILASDEHQRALSDGAPVEGVYVLGDVANTWQLKHVANHEARVVAHNLEHPDDLRANTLGPVPAAVF
+THPQAASVGLTVEQALADYGADAITVKTQPFGDVAYGWAMEDTEGVCTVVAEKATGRILGGHILGHEAANLIQPLVTGMA
+FGIDAHRLARGQYWPHPALTEVVENALLGLDVPDSGLL
+>KD337_NAFOICDF_01413
+MSPDPAASSAGDEVDGPDDPHVRAVSYADAMAT-TERFDLIILGSGSGNSLVTDHWEGRRVAIVDAGVFGGTCLNVGCIP
+TKMYAYPAQLAASG-AEAERLGVGLDFTGADFEGIRDRIFGRIDAISEGGLRYRRDQLEHTEVVAEEAWFSGPKELTTAS
+GRVLAGEQVVVAAGSRPTVPDVPGVGLPSVHTSDTIMRLPRQPKRLVILGGGYIASEFAAIFSGLGTEVVQVNRGARLLK
+AHDSSISTRFTALAARQWDVRTGWTLAGVEPVGDQRRADEGWVRVRLDAVEGQEQMVEREETLEADAVLLAVGRTPNTDR
+LRPEAAGFDVTAAGVLAVDEHQRVLSSGVPVEGVYALGDVANAWQLKHVANHEARVVAHNLEHPEDLRANTLGPVPAAVF
+TRPQIASVGLTQDEARELLGEDAVTVKEQAFGDVAYGWAMEDAEGVCTIVAERATGRILGAHLMGHDAANLIQPLVTAMS
+FGIDAHRLARGQYWPHPALTEVVENALLGLDVPDSGLL
+>SA211_MHAAABBN_01094
+------------------------------MATSAEHHDLLIIGSGSGNSLISEHWKGRSVVIADSGTFGGTCLNVGCIP
+TKMYAYPAGLAALP-PEARSLGVGLEFTGADFPAIRDRIFTRIDGISRDGLRYRRDDLDYTSVIQEEVRFVGPRRVRTAS
+GREITADQVVVAAGSRPTLPEIPGLDLPSVHTSDTVMRLDRLPRRLLVVGGGFIACEFASVFAGLGTEVVQVNRGHRLLK
+QHDMSVSTTFTKIAARRWDLRTGWTPAGIEPVEDAERAADGWVRVRLDRAGGQEQTGIVEEAIEADTVLIAVGRTPNTDR
+LDPAAAGLDVTDDGVLASDEHQRALSDGAPVEGVYVLGDVANTWQLKHVANHEARVVAHNLEHPDDLRANTLGPVPAAVF
+THPQVASVGLTVEQALADYGADAITVKTQSFGDVAYGWAMEDTEGVCTVVAEKATGRILGGHILGHEAANLIQPLVTGMA
+FGIDAHRLARGQYWPHPALTEVVENALLGLDVPDSGLL
+>TT9_LFPAFLNI_01329
+------------------------------MATSAEHHDLLIIGSGSGNSLISEHWKGRSVVIADSGTFGGTCLNVGCIP
+TKMYAYPAGLAALP-PEARSLGVGLEFTGADFPAIRDRIFTRIDGISRDGLRYRRDDLDYTSVIQEEVRFVGPRRVRTAS
+GREITADQVVVAAGSRPTLPEIPGLDLPSVHTSDTVMRLDRLPRRLLVVGGGFIACEFASVFAGLGTEVVQVNRGHRLLK
+QHDMSVSTTFTKIAARRWDLRTGWTPAGIEPVEDAERAADGWVRVRLDRAGGQEQTGIVEEAIEADTVLIAVGRTPNTDR
+LDPAAAGLDVTDDGVLASDEHQRALSDAAPVEGVYVLGDVANTWQLKHVANHEARVVAHNLEHPDDLRANTLGPVPAAVF
+THPQVASVGLTVEQALADYGADAITVKTQSFGDVAYGWAMEDTEGVCTVVAEKATGRILGGHILGHEAANLIQPLVTGMA
+FGIDAHRLARGQYWPHPALTEVVENALLGLDVPDSGLL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001010.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001010.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ee11d3c5ef30623495146ac249f8cafb9fd968d6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001010.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01519
+MREISEPY-HPRLSPESNITDFLERQAEERPDHGLFAVADEQDQWTDVSARDARERVRALAKGLIAAGVGAGDRVGLIAA
+TRLEWTLVDFAIWYAGAVTVPIYETSSATQVAWIVEDADVCAVVAGDESLVKTVRDAVHREHLPELRGVWVMDVAGGEPG
+SGLDELAALGADVSDEDLEARRSAANLEDLATIIYTSGTTGRPKGCELTHENFAELVNQTLSSSLGEVVRPDTSTVLFIP
+LAHVFARFVSVLTVAAGARCGHVTDLKRLSNSLQTFQPSFVLAVPRVFEKIYNAALLNAQSGGKDKIFRRGADVAVRWSR
+ALDSGKMTAPLRLQRAFYSALIYRRIRAAMGGRLEYAVSGGGPLSPDLAHFFRGVGLTILEGYGLTETTAPITVGRPGRL
+KIGTVGLPLGGNAVRIAEDGEILTRGTSLMRGYHDRPEANEEAF-EDGWFRTGDLGSLDEDGFLTITGRKKELIVTAGGK
+NVAPAMLEDAIRSDALISQVMVVGDAKPFIAAIVTLDADTLPSWLAAHGLPKDLDVAAAAKEERVRRHVQEIVDKASSAV
+SRAEGIREFRILDRDFSMEEGHMTPSLKMKRAVIMQDFAAEIADIYGEAPAQG
+>KBS0714_MOLHKGIG_01373
+MHEISEPYHHPRLSPEANITDFLERQATERPDHGLFAVPDAQDQWTDVSARDARERVRALAKGLIAAGIQPGETVGLLAS
+TRLEWTLVDFAIWYAGAVTVPVYETSSVSQVSWIIEDSDVRAVVTGNEDLAKTVRDAVQREGLPELIGLWTMDPADGAPG
+SGLEALVALGADVTDEELETRRSSAGLADLATIIYTSGTTGRPKGCELTHENFAELVNQTLSSSLGDVVREDTSTVLFIP
+LAHVFARFVSVLTVAAGARCGHVSDIKRLSVSLQTFQPSFVLAVPRVFEKIYNAALLNAQSGGKEKIFRRGADVAIRWSR
+ALDSGQMTAPLRLQRAFYSALVYRRIRTAMGGRLAYAVSGGGPLSTDLAHFFRGVGVTILEGYGLTETTAPITVGRPDRL
+KIGTVGHPLGGNQVRIAEDGEILTRGTSLMRGYHNRPEANEEAF-EDGWFRTGDLGALDDDGFLTITGRKKELLVTAGGK
+NVAPAMLEDAIRSDALVSQVMVVGDGKPFIAAIVTLDTDTLPAWLAANGLPKDLDVAAAAREDAVRRHIQEAVDKANSLV
+SRAEGIREFRILDRDFSLEEGHVTPSLKMRRSAIMKDFAAQIADIYGEPAPQN
+>KD337_NAFOICDF_01414
+MRQISEPY-LPRLSPDAAITDFLRDQAVQHPERALFAVPREDGSWDDVTAAEAWDRVRALARGLVAAGVGPGDRVAIVSA
+TRLEWTLADFAIWTAGAVTVPVYETSSASQIAWIFEDAGVGAAIADTPARAKSVSDAVHREGLPELKGLWVMDEDGGAPG
+AGLDRLTDAGADVPADELDARREGVTLESLATIIYTSGTTGRPKGCELTHGNFAELVNQTLRSSLGEVVDEGASTLLFIP
+LAHVFARFVSVLTVAAGARCGHVPDLSRLATSMDTYHPTFLLAVPRVFEKIYNASLLKAQAGGKEKIFRRGADVAVRWSR
+ALEEGRMTAPLRLQRAFYSALLYRRIREAMGGHLKYAVSGGGPLSPDLAHFFRGVGVTILEGYGLTETTAPITVGRPGKL
+KIGRVGQPLGGNEVRIDDDGEILTRGTSLFRGYRNRPEANAEAFTEDGWFRTGDLGELDDDGFLKITGRKKEIIVTAGGK
+NVAPAQLEDAIRSDALVSQVMVVGEAKPFVAAIVTLDADTLPSWASAHGLDPQISMAEAAREPQVIAHVQKAVDRANDTV
+SRAEGIREFRILDRDFSADEGHMTPSLKMRRTAILKDFQPVLDEIYGAGPARG
+>SA211_MHAAABBN_01093
+MHEISEPY-HPRLSPEANITDFLERQATERPDHGLFAVPDAQDQWTDVSARDARERVRALAKGLIAAGIQPGETVGLLAS
+TRLEWTLVDFAIWYAGAVTVPVYETSSVSQVSWIIEDSHVRAVVTGNENLAKTVRDAVQREGLPELIGLWTMDPADGAPG
+SGLEALVALGTDVTDEELETRRSSAGLADLATIIYTSGTTGRPKGCELTHENFAELVNQTLSSSLGDVVRQDTSTVLFIP
+LAHVFARFVSVLTVAAGARCGHVSDIKRLSVSLQTFQPSFVLAVPRVFEKIYNAALLNAQSGGKEKIFRRGADVAIRWSR
+ALDSGQMTAPLRLQRAFYSALVYRRIRTAMGGRLAYAVSGGGPLSTDLAHFFRGVGVTILEGYGLTETTAPITVGRPDRL
+KIGTVGHPLGGNQVRIAEDGEILTRGTSLMRGYHNRPEANEEAF-EDGWFRTGDLGALDDDGFLTITGRKKELLVTAGGK
+NVAPAMLEDAIRSDALVSQVMVVGDGKPFIAAIVTLDTDTLPAWLAANGLPKDLDVAAAAREDAVRRHIQEAVDKANSLV
+SRAEGIREFRILDRDFSLEEGHVTPSLKMRRSAIMKDFAAQIADIYGEPAPHN
+>TT9_LFPAFLNI_01328
+MHEISEPYHHPRLSPEANITDFLERQATERPDHGLFAVPDAQDQWTDVSARDARERVRALAKGLIAAGIQPGETVGLLAS
+TRLEWTLVDFAIWYAGAVTVPVYETSSVSQVSWIIEDSHVRAVVTGNENLAKTVRDAVQREGLPELIGLWTMDPADGAPG
+SGLEALVALGTDVTDEELETRRSSAGLADLATIIYTSGTTGRPKGCELTHENFAELVNQTLSSSLGDVVRQDTSTVLFIP
+LAHVFARFVSVLTVAAGARCGHVSDIKRLSVSLQTFQPSFVLAVPRVFEKIYNAALLNAQSGGKEKIFRRGADVAIRWSR
+ALDSGQMTAPLRLQRAFYSALIYRRIRTAMGGRLAYAVSGGGPLSTDLAHFFRGVGVTILEGYGLTETTAPITVGRPDRL
+KIGTVGHPLGGNQVRIAEDGEILTRGTSLMRGYHNRPEANEEAF-EDGWFRTGDLGALDDDGFLTITGRKKELLVTAGGK
+NVAPAMLEDAIRSDALVSQVMVVGDGKPFIAAIVTLDTDTLPAWLAANGLPKDLDVAAAAREDAVRRHIQEAVDKANSLV
+SRAEGIREFRILDRDFSLEEGHVTPSLKMRRSAIMKDFAAQIADIYGEPAPHN
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001011.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001011.fa
new file mode 100644
index 0000000000000000000000000000000000000000..99aeb470bd8e5d6e82ca77ff72dae172275feb9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001011.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01520
+MDRPVPPVEPAPPAVPAP-AVDPVHLPLRLAPGSGAGADRCVVVLHGFTSGPDSVRAWAE
+GIAAGGSHVSVPLLPGHGTRWQDLAATGADEIRGAVRETVDRELSRHRHVVVAGISMGGA
+LALDAAAHRPVSAAIVVNPALRFASPLAPLAPALAPFVPSVAPIANDIADPDARELAYPR
+TPVAGVAAVGRIQRAARRALPRITAPVTVFRSARDAVVPAASHRTLLRGLRRAPVDVVPL
+PRSRHVATLDYDLPLLIERSRAAVEAATRA
+>KBS0714_MOLHKGIG_01372
+M--------------PRPVAVAPEDLPLRLMPAAPARRDHCVVLLHGFTSTPASVRAWAE
+GLAAGGSPVSVPLLPGHGTRWEDLAATGADEIRAAVRAVVDLELARHGRVVMAGISMGGA
+LALDAAAHRPVAGVLVVNPALRFASPLAPFAPLLAPFVPTVAPIADDIADPTARERAYPR
+TPVAGVAALGRIQRAARRALPRITAPVTVYRSARDAVVPASSHRTLVRGLRQAPVEVVGL
+PRSRHVATLDYDLPLLIDHGRSAVAAMTTH
+>KD337_NAFOICDF_01416
+MTRLRP---AAPDRRPAP-GVDPAQRPFRLPATSLPGV--AVVMLHGFTSGPDSVRAWAE
+GVAAGGAAVHVPLLPGHGTRWEDLGTTDADELRAAVRDAVDAALATHRRVVVAGISMGGA
+LALDAAAHRDVAGVLVVNPALRFGSPLAVAAPLLRHVVPSVPSIAGDIADPDARELAYER
+APVAGVAQVGRIQTAARRGLGRITAPVTVFRSAEDAVVPERSHHTLLRGLTAAPVEVVRL
+LHSRHVATLDRDLPLLVARSRDAVAAAAR-
+>SA211_MHAAABBN_01092
+M--------------PRPVAVAPEDLPLRLMPAAPARRDHCVVLLHGFTSTPASVRAWAE
+GLAAGGSPVSVPLLPGHGTRWEDLAATGADEIRAAVRAVVDLELARHGRVVMAGISMGGA
+LALDAAAHRPVAGVLVVNPALRFASPLAPFAPLLAPFVPTVAPIADDIADPTARERAYPR
+TPVAGVAAVGRIQRAARRALPRITAPVTVYRSARDAVVPASSHRTLVRGLRQAPVEVVGL
+PRSRHVATLDHDLPLLIDHGRSAVAAMTTH
+>TT9_LFPAFLNI_01327
+M--------------PRPVAVAPEDLPLRLMPAAPARRDHCVVLLHGFTSTPASVRAWAE
+GLAAGGSPVSVPLLPGHGTRWEDLAATGADEIRAAVRAVVDLELARHGRVVMAGISMGGA
+LALDAAAHRPVAGVLVVNPALRFASPLAPFAPLLAPFVPTVAPIADDIADPTARERAYPR
+TPVAGVAALGRIQRAARRALPRITAPVTVYRSARDAVVPASSHRTLVRGLRQAPVEVVGL
+PRSRHVATLDYDLPLLIDHGRSAVAAMTTH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001012.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001012.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3c2fec05fbb33966b7a53f68a48a14c6db3c45d6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001012.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01521
+MSTFYWSAKTFAVAPATRLLFRPWVKGLGNVPAEGAAILASNHLSVSDSVFMPAMLERQV
+HFLAKKDYFTGAGPKGWITRKFFEATNQLPMDRSGGEASLRSLDAGLEALREGRLLGIYP
+EGTRSPDGRLHRGKIGVAKLALASGAPVVPIAMIGTDQAQPIGRTLPRIRRIGMIFGEPL
+DFSDRAEGVTDARVLRAVTDEIMEAIRRLSGQEYVDAYAADVKSGRVPAPPRA-RD
+>KBS0714_MOLHKGIG_01371
+MSTFYWSAKTFAVAPATRLLFRPWVKGLGNVPAEGPAILASNHLSVSDSVFMPAMLDRQV
+HFLAKHEYFTGPGVKGWVTRRFFEAANQLPMDRSGGEASLRSLDAGLEALREGRLLGIYP
+EGTRSPDGRLHRGKIGVAKLALASGAPVVPIAMIGTDRVQPIGHVLPRIRRLGMIFGEPL
+DFSDRAEAVGDPRVLREVTDEIMEAIRRLSGQEYVDTYAADVKAGRTAAPPRA-RD
+>KD337_NAFOICDF_01417
+MSAFYWSAKTFVVAPATRLLFRPWVKGLSHVPAEGPAILASNHLSVSDSVFMPAMLDRQV
+HFLAKQEYFTGRGAKGWATKKFFEATNQLPMDRSGGAASLRSLEAGLECLREGKLLGIYP
+EGTRSPDGRLHRGKIGVAKLALASGAPVVPIAMIGTDRVQPIGRILPTLRRLGMIFGEPL
+DFSHLQGREGDHRALRQVTDEIVEAIRRLSGQDYVDVYAADVKSGRVAVPPRAGRD
+>SA211_MHAAABBN_01091
+MSTFYWSAKTFAVAPATRLLFRPWVKGLANVPAEGPAILASNHLSVSDSVFMPAMLDRQV
+HFLAKHEYFTGPGVKGWVTRRFFEAANQLPMDRSGGEASLRSLDAGLAALREGRLLGIYP
+EGTRSPDGRLHRGKIGVAKLALASGVPVVPIAMIGTDRVQPIGHVLPRIRRLGMIFGEPL
+DFSGRAAAADDRRVLREVTDEIMEAIRRLSGQEYVDTYAADVKAGRVAAPPRA-GD
+>TT9_LFPAFLNI_01326
+MSTFYWSAKTFAVAPATRLLFRPWVKGLGNVPAEGPAILASNHLSVSDSVFMPAMLDRQV
+HFLAKREYFTGPGVKGWVTRRFFEAANQLPMDRSGGEASLRSLDAGLEALREGRLLGIYP
+EGTRSPDGRLHRGKIGVAKLALASGAPVVPIAMIGTDQVQPIGHVLPRIRRLGMIFGEPL
+DFSDRAEAVGDPRVLREVTDEIMEAIRRLSGQEYVDTYAADVKAGRTAAPPRA-RD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001013.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001013.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c0668c7bc70be41be1d7f6608c778a27a83d7b0d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001013.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01522
+MTEDPREKILAFGTAISEGAADIPGLDHWRSLPVAQAPSWADEAEHRAAVAELSQVPPLV
+FAGEVDLLRARLADVAQGRAFLLQGGDCAETFAGSTANRISARVKTILQMAAVLTYGASM
+PVVKMGRIAGQFAKPRSSDTETRDGVTLPSFRGEIVNGYEFTEEARRHDARRMVQAYHTS
+ASTLNLVRAFTQGGFADLRSVHQWNQGFMANPAYAQYEEMAAEIDRAVRFMNAAGVDFEA
+MRRTEFYSAHEALLLDYERALTRVDSRSGDPYATSAHFLWIGERTRQVDGAHVDFLSRVR
+NPIGVKLGPTTSAADALELAERLDPEREPGRLTFITRMGAERIRDVLPGIVEGVRDAGLE
+PVWVTDPMHGNTVTAANGYKTRRFEDVMDEVSGFFEVHRALGTRPGGMHVELTGDDVAEC
+LGGSDPINEADFDARYETLCDPRLNHQQSLEMAFKVTEALSHPERVAPRR
+>KBS0714_MOLHKGIG_01370
+MTEDPREKILAFGTAISEGAADIPGLDHWRSLPIAQAPSWADEADHRAAVAELSALPPLV
+FAGEVDLLRARLADVAQGRAFLLQGGDCAETFAGSTANRISARVKTILQMAAVLTYGASM
+PVVKMGRIAGQFAKPRSSDTETRDGVTLPSFRGEIVNGYEFTEQARRHDARRMVQAYHTS
+ASTLNLVRAFTQGGFADLRSVHQWNQGFMANPAYAQYEEMAAEIDRAVRFMNAAGVDFEA
+MRRTEFYSAHEALLLDYERALTRVDSRSGDPYATSAHFLWIGERTRQVDGAHVDFLSRVR
+NPIGVKLGPTTTVADALELAERLDPEREPGRLTFITRMGAERIRDVLPGIVEGVRDAGLE
+PVWVTDPMHGNTVTAANGYKTRRFEDVMDEVSGFFEVHRELGTHPGGMHVELTGDDVAEC
+LGGSDPINEADFDARYETLCDPRLNHQQSLEMAFKVTEALSHPERRAPRA
+>KD337_NAFOICDF_01418
+MHEDPRDQIMAFGTAISEGAAPDPALDAWRELPIKQAPTWADEDDFRAAVAELSQVPPLV
+FAGEVDVLRTRLADVARGQAFLLQGGDCAETFAGSTANRISARVKTILQMAAVLTYGASM
+PVVKMGRIAGQYAKPRSSDTETRDGVTLPSFRGEIVNGFEFTEEARRHDARRMVTAYHTA
+SSTLNLVRAFTQGGFADLRSVHQWNRGFMENPAYAQYEQIAAEIDRAVRFMDAAGADFEA
+MRRTEFYAAHEALLLDYERALTRLDSRTGLPYATSAHFLWIGERTRDVDGAHVDFLSRVR
+NPIGVKLGPTTTVDDVRALADRLDPEREPGRLTFITRMGADKVRDVLPGIVAGVRDEGLQ
+PVWVTDPMHGNTVTAANGYKTRRFEDVMDELTGFFEVHRELGTHPGGMHVELTGDDVAEC
+LGGSDPVDEADFDEHYETLCDPRLNHQQSLELAFKVTDALAHPHQ----D
+>SA211_MHAAABBN_01090
+MTEDPREKILAFGTAISEGAADIPGLDHWRSLPIAQAPSWADEADHRAAVAELSALPPLV
+FAGEVDLLRARLADVAQGRAFLLQGGDCAETFAGSTANRISARVKTILQMAAVLTYGASM
+PVVKMGRIAGQFAKPRSSDTETRDGVTLPSFRGEIVNGYEFTEQARRHDARRMVQAYHTS
+ASTLNLVRAFTQGGFADLRSVHQWNQGFMANPAYAQYEEMAAEIDRAVRFMNAAGVDFEA
+MRRTEFYSAHEALLLDYERALTRVDSRSGDPYATSAHFLWIGERTRQVDGAHVDFLSRVR
+NPIGVKLGPTTTTADALELAERLDPEREPGRLTFITRMGAERIRDVLPGIVEGVRDAGLE
+PVWVTDPMHGNTVTAANGYKTRRFEDVMDEVSGFFEVHRELGTHPGGMHVELTGDDVAEC
+LGGSDPINEADFDARYETLCDPRLNHQQSLEMAFKVTEALSHPERRAPRA
+>TT9_LFPAFLNI_01325
+MTEDPREKILAFGTAISEGAADIPGLDHWRSLPIAQAPSWADEADHRAAVAELSALPPLV
+FAGEVDLLRARLADVAQGRAFLLQGGDCAETFAGSTANRISARVKTILQMAAVLTYGASM
+PVVKMGRIAGQFAKPRSSDTETRDGVTLPSFRGEIVNGYEFTEQARRHDARRMVQAYHTS
+ASTLNLVRAFTQGGFADLRSVHQWNQGFMANPAYAQYEEMAAEIDRAVRFMNAAGVDFEA
+MRRTEFYSAHEALLLDYERALTRVDSRSGDPYATSAHFLWIGERTRQVDGAHVDFLSRVR
+NPIGVKLGPTTTVADALELAERLDPEREPGRLTFITRMGAERIRDVLPGIVEGVRDAGLE
+PVWVTDPMHGNTVTAANGYKTRRFEDVMDEVSGFFEVHRELGTHPGGMHVELTGDDVAEC
+LGGSDPINEADFDARYETLCDPRLNHQQSLEMAFKVTEALSHPERRAPRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001015.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001015.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3a6905a0a7369d1d94795e3d6e9823261bdf8527
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001015.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01526
+MGRESAAPTRRSLAHVSTSSSDTPVPADAIPAELDALVGDWLTMPDVAERLDQRVTRVHN
+LVKDHRLLAVRRPDPAVRAVPALFLTETGLLEPLQGTLVLLADAGYSDEESLRWLFTEDP
+SLPGRPIDALRDGRKTEVRRRAQALAW
+>KBS0714_MOLHKGIG_01367
+---------------MSTTSSDTPVPADAIPAELDALVGEWLSVPDVAEHLDQRVTRVHN
+LVHDRRLLAVRRPEPAVRSVPALFLTETGVLDSLQGTLVLLADAGFSDEEALRWLFTEDE
+SLPGRPIDALRDGRKTEIRRRAQALAW
+>KD337_NAFOICDF_01421
+---------------MTTEHPVDRVPSDAVSPELDALVGDWLTLPDVAERLDLRVTRVHN
+LINDRRLLAVRRPEPSVRAVPAAFLTERGLLEPLHGTLVLLQDAGFDDEEALRWLFTPDE
+SLPGRPIDALRDGHKTEVRRRAQALGW
+>SA211_MHAAABBN_01087
+---------------MSTTSSDTPVPADAIPAELDALVGEWLSVPDVAEHLDQRVTRVHN
+LVHDRRLLAVRRPEPAVRSVPALFLTETGVLDSLQGTLVLLADAGFSDEEALRWLFTEDE
+SLPGRPIDALRDGRKTEIRRRAQALAW
+>TT9_LFPAFLNI_01322
+---------------MSTTSSDTPVPADAIPAELDALVGEWLSVPDVAERLDQRVTRVHN
+LVHDRRLLAVRRPEPAVRSVPALFLTETGVLDSLQGTLVLLADAGFSDEEALRWLFTEDE
+SLPGRPIDALRDGRKTEIRRRAQALAW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001016.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001016.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e419e094beeebd672b5320b93c8b65e6c6b0864e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001016.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01527
+MPVDAAV--TRPRPADQDRFRAAVAEELTRTLDEHRERARAVHPLTVPLVDAVGDLAAGG
+KRLRAVLGWLGWRAAGGDPENPRIARTGAALELFQAAALIHDDILDRSDTRRGMPSVHRR
+FEAEHRASGWRHDAGHFGVSAAILAGDVALGMSETAFAAALEGAGRPARARDEFERMRFG
+VMVGQYLDVAAEMAPPATDPAEAEAAAEAVVEHKSARYSAVHPLALGGLLAGADDALVAA
+FAEVSLPFGLAFQYQDDLLGVFGDPAATGKPAGDDLREGKRTVLIARAVALLSPADAAAL
+DADLGDPGLSAERIAHWQRALEECGARQAVTDRVAALSARAAEAVGALEAHGVPADVRAE
+LTALIEAATTRRH
+>KBS0714_MOLHKGIG_01366
+MPADVAV--PRPRPADQDRFRAAVADALDRLLAEHRDLARDVHPLTAPLVDAIADLTAGG
+KRLRAVLAWLGWRAAGGEAEDPRIAEAGAAFELFQAAALIHDDILDRSDTRRGMPSVHRR
+FESLHREAGWRHAAEHFGVSAAILAGDVALGMSETAFARVLAGTPREDRARAELERMRFG
+VMAGQYLDVVAEMAPAARDAREAEAAAEAVVEHKSARYSAVHPLALGGLLAGADDGLVTA
+FARVSLPFGMAFQYRDDLLGVFGDPATTGKPAGDDLREGKQTVLIARAVELLAPDEAAAL
+DADLGDPDLGADRVAHWQGVLEACGARRAVEERVAALSHEAAGAVAGLLAHGVPEDVSAE
+LTQLIDAYTSRRH
+>KD337_NAFOICDF_01422
+M--------PTPETASVSDFRAAVAERLTAVLDGHARGAARIHPDADPVVEAVSVLTSGG
+KRLRAVLCWLGWRAAGGSPTDPRAAVAGAAFELFQAAALIHDDILDRSDTRRGMPSVHRR
+FEARHREHGWRHEAEHFGVSAAILAGDVALALSDSMFSRAIEGTPRAERARREMERMRFE
+VMVGQYLDVAAEMAPPAADPAAAERAARAVVEHKSARYSAVHPLALGALLAGADDDLVAA
+FEAVSLPFGMAFQLQDDLLGVFGDPAHTGKPAGDDLREGKRTVLVARAEALLPRGEAAAL
+DAELGDPALSAERVAHWQRRLEEVGARTAVADEVDRLSAEARRGLERLAALGVGTDVRGE
+LAELIDAYTVRTA
+>SA211_MHAAABBN_01086
+MPADVAVPRPRPRPADQDRFRAAVADALDRLLAEHRELARDIHPLTAPLVDAIADLTAGG
+KRLRAVLAWLGWRAAGGEAEDPRIAEAGAAFELFQAAALIHDDILDRSDTRRGMPSVHRR
+FESLHREAGWRHAAEHFGVSAAILAGDVALGMSETAFARVLAGTPREDRARAELERMRFG
+VMAGQYLDVVAEMAPAARDAREAEAAAEAVVEHKSARYSAVHPLALGGLLAGADDGLVTA
+FARVSLPFGMAFQYRDDLLGVFGDPATTGKPAGDDLREGKQTVLIARAVELLAPDEAAAL
+DADLGDPDLGADRVAHWQAVLEACGARRAVEERVAALSHEAAGAVAGLLAHGVPEDVSTE
+LTRLIDAYTPRRH
+>TT9_LFPAFLNI_01321
+MPADVAV--PRPRPADQDRFRAAVADALDRLLAEHRERARDVHPLTAPLVDAIADLTAGG
+KRLRAVLAWLGWRAAGGEAEDPRIAEAGAAFELFQAAALIHDDILDRSDTRRGMPSVHRR
+FESLHREAGWRHAAEHFGVSAAILAGDVALGMSETAFARVLAGTPREDRARAELERMRFG
+VMAGQYLDVVAEMAPAARDAREAEAAAEAVVEHKSARYSAVHPLALGGLLAGADDGLVTA
+FARVSLPFGMAFQYRDDLLGVFGDPATTGKPAGDDLREGKQTVLIARAVELLAPDEVAAL
+DADLGDPDLGADRVAHWQAVLEACGARQAVEERVAVLSHEAAGAVAGLLAHGVPEDVSAE
+LTRLIDAYTSRRH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001020.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001020.fa
new file mode 100644
index 0000000000000000000000000000000000000000..151ab711836a1458e82101a4f63d65a1d135c71a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001020.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01531
+MDADQLRPEDRHVPVMRDRVVDLLAPAVQAALDAGRAPVAVDGTLGMGGHTEAMLTRFPE
+LTVIGIDRDAHAQALAAERLGPLAERLVPFHGTYDLVPEAMAAAGVEKVDAALYDLGVSS
+YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEHELRRIIRRDGEERFAGPIAR
+AIVRARAEAPIETTGRLVEVIRTAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP
+AILDALHVGGRLVVMSYHSLEDRIAKRHLSAWAASTAPPGFPVVLEEHEPVVRTLTRGTE
+KPTEEEILENRRASSAKVRAVEKIRTSRTPA
+>KBS0714_MOLHKGIG_01362
+MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH
+LRVIGIDRDVHAQAMAVERLGPLAERLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS
+YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR
+AIVRARDEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP
+AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE
+KPTEEEISENRRASSARVRAVEKIRTSRTTA
+>KD337_NAFOICDF_01426
+MDPTQPLPRDRHVPVMRDRVVDLLAPAVEAAAAAGRTPVAVDGTLGMGGHTEVLLRRFPT
+LRVVGIDRDPNALAMAQERLGPLAERLVPFHGTYDQVPEALAAAGAERMDAALYDLGVSS
+YQLDARERGFAYSYDAPLDMRMDTTAPVTAADLVAELDEQSLRRIIRRDGEDRFAGPIAR
+AIVRAREEEPILTTGRLVDVIRAVVPVSAGNKGGHPAKRTFQALRIAVNEELDILDAAVP
+AVLDALEVGGRLVVMSYHSLEDRIAKRHLQEWAASTAPPGFPVELPEHRPLVKVLTRGTE
+KPTEEEIEENRRASSAKVRAVEKIRTSRTTA
+>SA211_MHAAABBN_01082
+MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH
+LRVIGIDRDVHAQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS
+YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR
+AIVRARAEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP
+AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE
+KPTEEEISENRRASSAKVRAVEKIRTSRTTA
+>TT9_LFPAFLNI_01317
+MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH
+LRVIGIDRDVHAQAMAVERLGPLAERLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS
+YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR
+AIVRARDEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP
+AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE
+KPTEEEISENRRASSARVRAVEKIRTSRTTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001021.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001021.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4c54ec36db10133208db2366632a134f37ed1aee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001021.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01532
+MTLHEEMSMAAHARIAEPL----RHTG---APARPAPQERTPLSVVPAPLPRSRSGMTVL
+CVVVLLAALAAVLVMNITMSNRQYALLDLRQEQQAVTEVNERLAEQVGYLEAPQNVAARA
+DALGMVAPAGTASVDAATGEFRGEAQPAREGEISATFVAPPVNADAVRQGSAGSADADRG
+DIEGPRTLG--APAAAPGAAASDDRDASD----R
+>KBS0714_MOLHKGIG_01361
+MTLHEEMSMAAHARIAESL----RPGSTPVAPARPTPQERTPLSVVPAPLPRSRSGVTVL
+CVLVVLAALAAVLVMNITMSNRQYALLDLRQEQQAVTETNERLAEQVGHLEAPQNLAARA
+DALGMVAPAGTASVDAGTGQFSGEAQAAQDGDISATYVAPPADADAVRQGTAGDG---QD
+EIEGPRTLG------GEDASAAPDQDAAD----R
+>KD337_NAFOICDF_01427
+MTAYEETGMSAQAWRDEARTAWPRTGATPEREHR----QRTPLSVVPTPLPRSGSGVAVL
+CGLVLLVALGLVLVMNITMSNRQFTLLDLRAQQTTLTETNERLAEQAGYLDAPQNLAARA
+GAMGMVSPGATSTVDVASGAVAGPSTGAGSTTLPEGRIAPPADADLARQGEA------QG
+QIPGPRTVDPAAPTAAPSGETAPTPAPTDAPAGR
+>SA211_MHAAABBN_01081
+MTLHEEMSMAAHARIAESL----RPGSTPVAPARPAPQERTPLSVVPAPLPRSRSGVTVL
+CVLVVLAALAAVLVMNITMSNRQYALLDLRQEQQAVIETNERLAEQVGNLEAPQNLAARA
+DALGMVAPAGTASVDAGTGEFGGEAQAAQDGDVSATYVAPPADADVVRQGASAEG---QD
+EIEGPRTLG------GEDASAAADQDAAD----R
+>TT9_LFPAFLNI_01316
+MTLHEEMSMAAHARIAESL----RPGSTPVAPARPTPQERTPLSVVPAPLPRSRSGVTVL
+CVLVVLAALAAVLVMNITMSNRQYALLDLRQEQQAVTETNERLAERVGHLEAPQNLAARA
+DALGMVAPAGTASVDAGTGQFSGEAQAAQDGDISATYVAPPADADAVRQGTAGDG---QD
+EIEGPRTLG------GEDASAAPDQDAAD----R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001023.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001023.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ece720f7c5aecfa70ad026cd12b58393902ae51c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001023.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01534
+MS-SQPAQPQPLTPAQQDDAFRPSRTPATPWDELTRALQAAGVAARTHGRGPAAGVTGACLDSRVVRPGDLYVALPGARS
+HGADFARAAVDAGAAGVLTDAEGRARLAEQGLDGSAVIEVDSVRTAAGVVAARVYGGGQDAGPRLIGITGTNGKTTTSFL
+AAALLEALDRRSGVIGTILIRAGGREVPSTLTTPESTQLHALMALMREEQVDTAVMEVSSHAVAYQRIAGLRYAVAGFTN
+LTRDHLDMHGSMEEYFEAKAGLFDPERTARAVITVDGGEGPRWGLSMARAVRTPVTTLALGPAAPHPGALAEEDPDFRAD
+WEIAELVPDGLGHRFTLRHGATGRALRASVGLPGRFNAANAALAVLLVLYAVGEEHLDALAAVLDVPAGEGPLAAAVPGR
+MEVVGRAPDAVVDFAHNPDGMVQALRSLADAREAAGRSGRTLIVFGSAGDRDREKRPIMGEIAARAADVVIVTDDTPHTE
+DPAPIRAQILEGARAEAARLLQAEGRTVLVEEVADRAVAIRRAAELAAPQDGILVAGRGHETTMDYDGELVPLDDRQALR
+EALAARAAAASPRASDPGSGAPRGGKVDES
+>KBS0714_MOLHKGIG_01359
+MT-TPSDPPAPLTPAQQDAAFRPSHTPAAAWPALAQALAEAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGARA
+HGAAFAATALEAGAVGVLTDAAGRALLAEQGLADVPVLEVDAVRTAAGTVAARVYGGGGDTGPRLLGVTGTNGKTTTSFL
+AAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRYAVAGFTN
+LTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAPVTTLALGPAAPTPGALAEHDPGLRAD
+WEVAELAPDGLGHRFTLRHAATGRELRASVGLPGRFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGR
+MEVVGREPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVLIVTDDTPHSE
+DPAPIRAHILAGARAEADRIAREEGRTVVIEEVADRATAIRRAVELAGPQDGILLAGRGHETTMDYDGELVPLDDRVALR
+EALAARVAAASASGSGP----AREGKVIES
+>KD337_NAFOICDF_01429
+MTDDAPQTTAPLTPAEQDAAFRPAAVTPVAWAEVAAALRAAGQDVRERSAAAAPAVTGAALDSRVVRPGDLYVALPGARA
+HGAAFAAAAREAGAAGVLTDGDGVALLAEQGLDDLPVLEVESVRAAAGVAAARIYGGGPDAGPRLLGVTGTNGKTTTSFL
+AASIVEALGERSGIIGTILTRAGDRQVPSTLTTPESAQLHALMALMRQEGVDTAVMEVSSHAVEYRRIAGLHYAVAGFTN
+LTQDHLDQHGTMEGYFRAKLGLFEADRTDRAVVVLDGGEGPRWGVKTARRAGAPVTTLALGAASPTPGALAEEHPDVVPD
+WQVTDLVADGLGHRFALVHAATGRRLPASVGLPGLFNVANAALAALMVLESIGEDRLDELAAVLDVPAGTGPLAAAVPGR
+MEVVGREPDAVVDFAHNPDGMVQALRALGDARAAAGRAGRTLIVFGAAGDRDATKRPLMGRIAAEHADVVIVTDDTPHTE
+DPAPIRAQLLEGAREEAARAA-AAGREVRVEEFADRAAAIRRAAELAAPEDGILVAGRGHETEMDYDGTLVPLDDRVALR
+DALAAR------RPGDAQEPGVAGGKVAGK
+>SA211_MHAAABBN_01079
+MT-TPSDPPAPLTPAQQDAAFRPSHTPATPWPALAQSLAGAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGAHA
+HGAAFAARALEAGAVGVLTDAAGRALLAEQDLADAPVLEADAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFL
+AAALLEALGHRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEVSSHAVAYQRIAGLRYAVAGFTN
+LTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAPVTTLALGPAAPTPGALAEHDPGVRAD
+WEVAELAPDGLGHRFTLRHAATGRELRASVGLPGRFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGR
+MEVVGREPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVVIVTDDTPHSE
+DPAPIRAHILAGARAEADRIAREEGRTVVIEEVADRAAAIRRAVELAGPQDGILLAGRGHETTMDYDGELVPLDDRVALR
+EALAAGAAVASASVSGP----VREGKVIES
+>TT9_LFPAFLNI_01314
+MT-TPSDPPAPLTPAQQDAAFRPSHTPATPWPALAHALAEAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGARA
+HGAAFAATALEAGAVGVLTDAAGRALLAEQGLVDVPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFL
+AAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRYAVAGFTN
+LTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAPVTTLALGPAAPTPGALAEHDPGLRAD
+WEVAELAPDGLGHRFTLRHAATGRELRASVGLPGRFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGR
+MEVVGREPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVLIVTDDTPHSE
+DPAPIRAHILAGARAEADRIAREEGRTVVIEEVADRATAIRRAVELAGPQDGILLAGRGHETTMDYDGELVPLDDRVALR
+EALAARVAAASASGSGP----AREGKVIES
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001024.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001024.fa
new file mode 100644
index 0000000000000000000000000000000000000000..615e982f9eee6f9329a5d2d309e20181f852d685
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001024.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_01535
+MIALTAAQIAEAVSGTLSPALDPQTVLVHVTPDSREVAAEGTLYVAKPGERADGHDFIDAALAAGAVAVLAERPTQAPDG
+AEHPSIVVEDAVLAMGALAREVVSRIREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRA
+ELETRYLVVEMGADHVGNIAYLCDIVRPDVGVVLMVGTAHAGSFGGVANIAATKGELAEAVGPEGAVILNLDDDRVAAMA
+SRAQAPVTWFTADEAGAARAAQDVAAGRAAGLVAARALHADDHERAAFDLQIGADADAPRHPLTSGLTGLHHAHNVLAAA
+AAAHAAGMAPADVARVLDGLGPTSRFRMERTDRPDGVTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELG
+DARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEGSWGDEAHFVEDVAQAEEFLAEHLAPGDLVLVKSSNGVGLA
+ALGERLATAGA-SDPAPRPVRLPEGVPTVIGLLIGGVLGLVLSAAGTPLFIRFLVKRGYGQFVRDDGPTTHKTKRGTPTM
+GGAVIIGAFVLAYLLTHGILALLGVGFGGPTASGLILLFLTVGMAFVGFVDDFTKITKQQSLGLTPRGKIILQGLIGTAF
+AVLALNFPDDRGLTPASTAISFARDVPWLDLAFAGPVVGLILFVIWSNLITTATTNAVNLTDGLDGLATGATAMITGAYV
+LMSIFQSSQACSLVDEPGCYEVRDPMDLALLGAILTGSLLGFLWWNTSPAKIFMGDTGSLGLGGALAGFAILSRTELLVV
+LLAGLMVAITVSVIVQVGWFRISGGKRVFLMAPLQHHFELKGWAEVTVVVRFWLVSLMCVTAGLAVFYGEWIVRQGGLAG
+VTP
+>KBS0714_MOLHKGIG_01358
+MIALTAAQIAEAVSGTLSATLDPATVLVHVTPDSREVTAEGTLYVAKPGERADGHDFIDAALGAGAAAVLAERATHAPDG
+AAHPAIIVEDAVLAMGALAREVVRRVRGHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRA
+ELDTRFLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPEGVAVLNLDDERVAGMA
+ARTAAPITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPVFDLQVGTEEAAVRHPVASGLTGLHHVHNVLAAA
+AAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGVTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELG
+DARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNGVGLA
+ALGERLATADAVAAPSASP-------------------------------------------------------------
+------------------------------------------------------KESR----------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--P
+>KD337_NAFOICDF_01430
+MIALTAAQIAEAVSGTLSSTLDPETVLVHVTPDSREVVGEGTLYVAKPGEHADGHDYIDAALAAGASAVLAERPTQDADG
+AAHPAILVADAVLAMGALAREVVRRIREHSPTTVIGITGSAGKTTTKDLLAALLSTQGPTVAPVGSFNGEVGVPLTVFRA
+ALDTRYLVVEMGADHVGNIAYLCDVVTPDIGVVLMVGTAHAGSFGGVENIAKTKGELVEALGPDGVAVLNRDDGRVAAMA
+SRTQAPVVWFSTEESGAAAAAEDVAAGRASGLSVARALTADAEERPVFDLQLGADLDAPRHAVRAGLTGLHHAHNMLAAA
+AAAQAAGMDPADIARGLDGLGPTSRHRMERSERADGVSIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELG
+DARIREHTLVGESVVRLNISQLLVVGAGARPLYIGAMNEGSWGDEAHFVDDVEQAEAFLAEALQPGDIVLVKSSNGVGLA
+ALGDRLAAADV-TPSTASP-------------------------------------------------------------
+--------------------------------------------------SDTTKETR----------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--P
+>SA211_MHAAABBN_01078
+MIALTAAQIAEAVSGTLSATLDPATVLVHVTPDSREVTAEGTLYVAKPGERADGHDFIDAALGAGAAAVLAERATHAPDG
+AAHPAIIVEDAVLAMGALAREVVRRVREHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRA
+ELDTRFLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAGMA
+ARTAAPITWFTADERGVARAAEDVAASRASGLVAARDVRSDDQERPVFDLQVGTDEAAVRHPVASGLTGLHHVHNVLAAA
+AAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGVTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELG
+DARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNGVGLA
+ALGERLATADAVAAPSASP-------------------------------------------------------------
+------------------------------------------------------KESR----------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--P
+>TT9_LFPAFLNI_01313
+MIALTAAQIAEAVSGTLSATLDPATVLVHVTPDSREVTAEGTLYVAKPGERADGHDFIDAALGAGAAAVLAERATHAPDG
+AAHPAIIVEDAVLAMGALAREVVRRIRGHSPTTVIGITGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRA
+ELDTRFLVVEMGADHVGNIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAGMA
+ARTAAPITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPVFDLQVGTDEAAVRHPVASGLTGLHHVHNVLAAA
+AAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGVTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELG
+DARVREHTLVGESVVRLNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNGVGLA
+ALGERLATADAVAAPSASP-------------------------------------------------------------
+------------------------------------------------------KESR----------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--P
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001026.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001026.fa
new file mode 100644
index 0000000000000000000000000000000000000000..47ae875ef2b8e04f2388c0362499984d97ef4cbf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001026.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01537
+MSPTELHPVRTPADEEETEARSRPLQRLWRLVEGRRALDLSVLLIGGSTFLLTALGLVMV
+LSSSSVEAIGTGGGSYGLFLRQTMWAVAGLAALLLFSRLPIGWIKALAWPAFGLAVVLLS
+LVAFTPLGVTVGGNTNWLGIGGFRMQPSEAAKLALALWAAAVLERKHRLVTQVRHALVPV
+LPGGLLLIGLVMAGSDLGTAIILALVLAAVLFVAGTHHGVFIAFSAVTVVGAIALTLLAP
+HRMVRVQAWLGDCSDAS-DPCFQPDHGMYALASGGWWGAGLGQSRQKWSYIPEAENDFIF
+TILGEELGLVGTLGVLLAYLALAVGMYRVAAGTTSPFIRLATWGIMAWLVGQAFVNIAMV
+SGVIPVVGVPLPFISYGGSALTLSLTAVGIVLAFARHERRRAEEPDARPDADDPDTDPLP
+VIPAPASQES-
+>KBS0714_MOLHKGIG_01355
+MSPIELRPVRPRAADDAPEHRERILRRMWRVLEGRRALDLSVLLISGCTALLTVLGLVMV
+LSSSSVEAIGTGGGSYALFLRQSAWAVAGVAALLVFSRLPVRVLKALAWPAFGVAVILLA
+LVAFSPLGVTVGGNRNWLGIGGFRMQPSEAAKLALALWAAAVLERKHRLVTQVRHALIPV
+LPGGLLLLVLVMAGSDLGTAIILAIVLATVLYVAGTHWGVFLTFLALSVLGILALTLLAP
+HRMVRVQAWMGDCSDAT-DPCFQPAHGMYALASGGWWGAGLGQSRQKWSYIPEAENDFIF
+TILGEELGLVGTLVVLLAYLGLAIGIYRVAAGTTSTFIRLSTWGILAWLVGQAAVNIAMV
+SGVIPVVGVPLPFISYGGSALTLSLSAVGIVLAFARHERRRAAQPDARPQADEPDTDPLP
+VIPTPALQEPR
+>KD337_NAFOICDF_01433
+MPSTATRPEASSRASARTAVRPR-LAGFWGALEGRRALDWAALLIGLCTAVLTVLGLVMV
+LSASSVEAISSSGGSYGLFLRQGGWALGGAVLLAVLRRLPVDLYRRLAWAAYLFAFLLLA
+LVAFTPLGKEVNGNTNWLQLGPVTFQPSEAAKLAMALWAAAVLQRKERLVHLVSHALVPV
+LPFGVALILLVLKGRDLGTALILAFILAVILFVAGTPGRVFAVLAGIGVVAALGMTVFAA
+NRMERVQAWLFGCEGLQGDPCMQPDHGIYALASGGWWGVGLGQSRQKWNYIPEAENDFIF
+TILGEELGLVGTLLVLACFVGLAVGMYRVAAGASSTFVRLATWGILAWIVGQAAMNIAMV
+TGLLPVVGVPLPFISYGGSALTLSLAAVGVVLSFARHER------DLLPAAEASAADP--
+-ASSASPQESR
+>SA211_MHAAABBN_01075
+MSPIELRPVRPRADDDAPEHRERLLHRMWRVLEGRRALDLSVLLISGCTALLTVLGLVMV
+LSSSSVEAIGTGGGSYALFLRQSAWAVAGVAALLVFSRLPVRVFKALAWPAFGVAVILLA
+LVAFSPLGVTVGGNRNWLGIGGFRMQPSEAAKLALALWAAAVLERKHRLVTQVRHALIPV
+LPGGLLLLGLVMAGSDLGTAIILAIVLATVLYVAGTHWGVFLTFLALSVLGILALTLLAP
+HRMVRVQAWMGDCSDAT-DPCFQPAHGMYALASGGWWGAGLGQSRQKWSYIPEAENDFIF
+TILGEELGLVGTLVVLLAYLGLAIGIYRVAAGTTSTFIRLSTWGILAWLVGQASVNIAMV
+SGVIPVVGVPLPFISYGGSALTLSLSAVGIVLAFARHERRRAAQPDARPQADEPDTDPLP
+VIPTPALQEPR
+>TT9_LFPAFLNI_01310
+MSPIELRPVRPRADDDAPEHRERLLPRMWRVLEGRRALDLSVLLISGCTALLTVLGLVMV
+LSSSSVEAIGTGGGSYALFLRQSAWAVAGVAALLVFSRLPVRVFKALAWPAFGVAVILLA
+LVAFSPLGVTVGGNRNWLGIGGFRMQPSEAAKLALALWAAAVLERKHRLVTQVRHALIPV
+LPGGLLLLILVMAGSDLGTAIILAIVLATVLYVAGTHWGVFLTFLALSMLGILALTLLAP
+HRMVRVQAWMGDCSDAT-DPCFQPAHGMYALASGGWWGAGLGQSRQKWSYIPEAENDFIF
+TILGEELGLVGTLVVLLAYLGLAIGIYRVAAGTTSTFIRLSTWGILAWLVGQAAVNIAMV
+SGVIPVVGVPLPFISYGGSALTLSLSAVGIVLAFARHERRRAAQPDARPQADEPDTDPLP
+VIPTPALQEPR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001027.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001027.fa
new file mode 100644
index 0000000000000000000000000000000000000000..be137137481bee8cfa27b9a98bf304e544a5b915
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001027.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01538
+MPQTPDPARELRVVLAGGGTAGHISPMLAIARALESDDAGPVRCTMVGTASGMETRLVPE
+AGYELDLIERVPMPRRPSMDVVHFPARMRAAVAAAGRILAERRADVVVGVGGYVATPVYL
+AAFRAGVPVVVHEANARPGLANRIGALRAAHVGTALPDTRLRGARWVGMPMRPEISGLDR
+AAQRRAARAALGLDPERTTVVVTGGSSGALAVNRTVRDSLDDLLGAGLQVFHLTGRDKAL
+TEADGTPLRREGYVQREYLDGMEQAYAAADLLVARSGAGTVCEVSAVGLPAVYVPLPIGN
+GEQALNARPVVEAEGALTVRDDAFGRAWVQRQLIPLATDPERLARMGEAAARFGVRDADV
+TMAGLVRSAAEEGARR
+>KBS0714_MOLHKGIG_01354
+MTQTSHPSGPLRVVLAGGGTAGHISPMLAIARALEGDGGGPVECTMVGTASGMETRLVPE
+AGYELDLIDRVPMPRRPSMDVVRFPARMRAAVATAARILRDRRADVVVGVGGYVATPVYL
+AAFRAGVPVVVHEANARPGLANRIGALRATHVGTALPDTRLRGARWVGMPMRPEISGLDR
+AAARRAAREALGLDPDRTTVVVTGGSSGALAVNRTVRAALGDLLDAGLQVFHLTGRDKAL
+TEDDGSLLVRDGYVQREYLAGMEQAYAAADLIVARSGAGTVCEVSAVGLPAVYVPLPIGN
+GEQALNARPVVEAEGALLVRDDAFGRAWVQRQLIPLATDPERLARMGEAAARFGVRDADV
+TMAGLVRSAAQEGARR
+>KD337_NAFOICDF_01434
+MTTPNDASRPLRVVLAGGGTAGHISPMLAIARALGRQDPSTV-CTMVGTDSGMETRLVPQ
+AGYELDFVERVPMPRRPSMDVVRFPGRFQASVRQAGEILRRRGADVLVGVGGYVSTPMYL
+AASRAGVPVVVHEANARPGLANRVGALRAARVGTALPDTRLPKAQWVGMPMRPEISGLDR
+AAARDAARAELGLDPERTTVVVTGGSSGALNVNRTVRESLDDLLGAGLQVFHLTGRGKEL
+TDEAGQRVTRPGYVQREYLDGMEKAYAAADLIVARSGAGTVCEIAAVGLPAVFVPLPVGN
+GEQALNARPVVDAGGALLVRDETFRADWVRRELIPLATDPQRLAAMGEAAARLGVRDADV
+RTADLVREAAREGARR
+>SA211_MHAAABBN_01074
+MTQTSHPSGPLRVVLAGGGTAGHISPMLAIARALEGDGGGPVECTMVGTASGMETRLVPE
+AGYELDLIDRVPMPRRPSMDVVRFPARMRAAVATAARILRDRRADVVVGVGGYVATPVYL
+AAFRAGVPVVVHEANARPGLANRIGALRAAHVGTALPDTRLRGARWVGMPMRPEISGLDR
+AAARRAAREALGLDPDRTTVVVTGGSSGALAVNRTVRAALGDLLDAGLQVFHLTGRDKAL
+TEDDGSLLVRDGYVQREYLAGMEQAYAAADLIVARSGAGTVCEVSAVGLPAVYVPLPIGN
+GEQALNARPVVEAEGALLVRDDAFGRAWVQRQLIPLATDPERLARMGEAAARFGVRDADV
+TMAGLVRSAAQEGARR
+>TT9_LFPAFLNI_01309
+MTQTSHPSGPLRVVLAGGGTAGHISPMLAIARALEDDGGGPVECTMVGTASGMETRLVPE
+AGYELDLIDRVPMPRRPSMDVVRFPARMRAAVATAARILRDRRADVVVGVGGYVATPVYL
+AAFRAGVPVVVHEANARPGLANRIGALRATHVGTALPDTRLRGARWVGMPMRPEISGLDR
+AAAGRAAREALGLDPDRTTVVVTGGSSGALAVNRTVRAALGDLLDAGLQVFHLTGRDKAL
+TEDDGSLLVRDGYVQREYLAGMEQAYAAADLIVARSGAGTVCEVSAVGLPAVYVPLPIGN
+GEQALNARPVVEAEGALLVRDDAFGRAWVQRQLIPLATDPERLARMGEAAARFGVRDADV
+TMAGLVRSAAQEGARR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001033.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001033.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7b6f3008bea4617182a7ebeaab374bba3add17b5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001033.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01544
+MAGALKKTMIYLGLADGEEYDEQQRAAERDAAERRDVVEARRAAEPDTDPSMEPVRSATV
+VRPESIERAESPAPS--GSTAAAPAEPAELRRSSRPEPVDPGYRAPVTPIKRAAASSAEG
+APVSTLSTVHPRSYNDAKAIGEAFRSGMPVIMNVTELGENEAKRLVDFAAGLVFGLHGSI
+SRITSKVFLLTPANVDVVGAEQGDAEESGDPYDGD
+>KBS0714_MOLHKGIG_01348
+MAGALKKTMIYLGLADGDEYDEQPRAAERETAPRHEVVEARRPAEPDTDPHMEAVRPAAV
+RDPEPAERPEPVTPS--GSTAADPVEP---RRPARPEPVDPGYRAPVTPIKRAAASSAEG
+ASVHTLSTVHPRSYNDAKAIGEAFRSGVPVIMNVTDLGENEAKRLVDFAAGLVFGLHGSI
+SRITSKVFLLTPATVDVVGAEQGESGAADSPFDGD
+>KD337_NAFOICDF_01440
+MAGGLKKTMIYLGLADGDEYDDDPRHEAVDAAPRREPVEARRVAEP--APRLE-------
+--PEDEEFDEPSTPSHAGSTAAAAAEPAPRRAASRPETADPGHRAPVTPIKRAAAPSAEG
+DAVRTLSTVHPRSYNDAKRIGEAFRTGTPVIMNVTDLGENEAKRLVDFAAGLVFGLHGSI
+SRITSKVFLLTPSSVEVVGEEPPAGRDGDAPYDND
+>SA211_MHAAABBN_01068
+MAGALKKTMIYLGLADGDEYDEQPRAAEREAAPRHEVVEARRPAEPDTDPHMEAVRPAAV
+RDPEPAERPEPVTPS--GSTAAEPVEP---RRPARPEPVDPGYRAPVTPIKRAAASSAEG
+ASVHTLSTVHPRSYNDAKAIGESFRSGVPVIMNVTDLGENEAKRLVDFAAGLVFGLHGSI
+SRITSKVFLLTPATVDVVGAEQGESGVADSPFDGD
+>TT9_LFPAFLNI_01303
+MAGALKKTMIYLGLADGDEYDEQPRATEREAAPRHEVVEARRPAEPDTDPHMEAVRPAAV
+RDPEPAERPEPVTPS--GSTAADPVEP---RRPARPEPVDPGYRAPVTPIKRAAASSAEG
+ASVHTLSTVHPRSYNDAKAIGEAFRSGVPVIMNVTDLGENEAKRLVDFAAGLVFGLHGSI
+SRITSKVFLLTPATVDVVGAEQGESGAADSPFDGD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001035.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001035.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0ffd39a4010c81640bcfd976686be7466a83e361
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001035.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01546
+MALSWEDVVNKQFQPTKFREGYDQGEVDDFLDEIVGELKRLQGLNEQLTAENEALRAGGA
+VPDADAAVDAPVADADAAAVVDAGQSPAPAALAD-AEPGLEVEPTPSSADPASASAAGVL
+AMAQRVHDEHVAAGEQRRDELISEAEARAEALVAEAEETRTRTLEELAADKAGLEAEVEQ
+LRGFETDYRSRLTAYIEGQLREIRSQERVEPAQRPA
+>KBS0714_MOLHKGIG_01346
+MALSWEDVVNKQFQPTKFREGYDQTEVDDFLDEIVAEFKRLIALNEQLESENAELRAGGA
+APAAGPAADTP----EAAATPASAEESAPAA-------------APESADAAATSAAGVL
+AMAQRLHDEHVAAGEQRSTELVAEAEATAARLVSDAEEQKARTLEALAEEKAGLEGEVEQ
+LRSFETDYRSRLTSYIEGQLREIRAQKRVEPPTPTA
+>KD337_NAFOICDF_01442
+MVLSWEDVVNKEFQLTKFREGYDREEVEDFLDEVVEELKRLTEENDRLRSDLDACREGAP
+---AQAEASAPAAGEAAPAL----QAPAPVAPVEPSAPG-----EPVAPTDSATSAAGVL
+AMAQRLHDEYVAEGEQRRDRIIADAEAEATTVVRQAEETRTRTLSDLESRRKGLEADVER
+LRAFETDYRSRLTAYIEGQLREITAQERLEPAKGTV
+>SA211_MHAAABBN_01066
+MALSWEDVVNKQFQPTKFREGYDQTEVDDFLDEIVAEFKRLIALNEQLESENAELRAGGA
+A----PVADTP----EAAETPSPVEEPAPAA-------------APEAADAAATSAAGVL
+AMAQRLHDEHVAAGEQRSTELVAEAEATAARLVSDAEEQKARTLEALAEERAGLEGEVEQ
+LRSFETDYRSRLTSYIEGQLREIRAQKRVEPPTPTA
+>TT9_LFPAFLNI_01301
+MALSWEDVVNKQFQPTKFREGYDQTEVDDFLDEIVAEFKRLIALNEQLESENAELRAGGA
+APAAAPAADTP----EAAATPASVEEAAPAA-------------APESADAAATSAAGVL
+AMAQRLHDEHVAAGEQRSTELVAEAEATAARLVSDAEEQKARTLEALAEEKAGLEGEVEQ
+LRSFETDYRSRLTSYIEGQLREIRAQKRVEPPTPTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001036.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001036.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fa1dc20e074665c045b1625246e67851056609d9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001036.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01547
+MS------AAVEAPAPAAGPGARRRAVLAALLVAVLAYALDQLTKLWVETTMELGDSVTV
+VPGLLRWHYILNPGAAFSIGEDHTWVFTVIQAVVAVAAVVGIVRARSLPWALALGGLAGG
+VLGNLTDRLFRPPSFGQGHVVDMISVPRFAVFNVADSFIVCSILAIAFLVMTGRRLDGTR
+EA------
+>KBS0714_MOLHKGIG_01345
+--------------------------MLTALIVAVLAYALDQLTKYAVESTMQLGDSVAV
+IPGVLRWHYILNPGAAFSIGEDHTWVFTIIQAVVAVAALVGIARVRSTPWALALGGLAGG
+VLGNLTDRLFRPPAFGRGHVVDMISVPHFAIFNVADSFIVCSVIGVALLVMTGRRLDGTR
+EA------
+>KD337_NAFOICDF_01443
+MSPAAPQDALTDHRDAPARPG--RGVVGAALGVATLAYALDQGTKLLVERTMELGESIVV
+IPGLLRWHYILNPGAAFSIGTDVTWLFTLIQAVVAVVALVALLRSRSRAWSVALGGLLGG
+VMGNLTDRLFRPPSFGQGHVVDMVSVPNFAIFNVADSFIVCSILTLCLLLMSGRRLDGTR
+ESDAAAEA
+>SA211_MHAAABBN_01065
+--------------------------MLTALVVAVLAYALDQLTKYAVESTMQLGDSVAV
+IPGVLRWHYILNPGAAFSIGEDHTWVFTVIQAVVAVAALVGIARVRSTPWALALGGLAGG
+VLGNLTDRLFRPPAFGRGHVVDMISVPHFAIFNVADSFIVCSVIGVALLVMTGRRLDGTR
+EA------
+>TT9_LFPAFLNI_01300
+--------------------------MLTALIVAVLAYALDQLTKYAVESTMQLGDSVAV
+IPGVLRWHYILNPGAAFSIGEDHTWVFTVIQAAVAVAALVGIARVRSMPWALALGGLAGG
+VLGNLTDRLFRPPAFGRGHVVDMISVPHFAIFNVADSFIVCSVIGVALLVMTGRRLDGTR
+EA------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001037.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001037.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c57a2823198923de2ebe65f3625f146efc0f7ca6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001037.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01548
+MEPIPGATARIEVTPDRAGRRADAVLAEVLGLSRSALADWFSRGLVRAESRTGRRDRVLA
+KSAKAVAGEVLAVDVPDDPDPLEVRAERVDALRILHEDEHLIAVDKPTGVAAHPSPGWAG
+PTVVGALAALGHDISTSGAPERQGIVHRLDVGTTGVMVVAKTEQAYAALKDQFRRRVPEK
+VYHALVQGIPDPLSGTVDAPIGRHPGHHWKFAVLDGGRPSVTHYETLEVFGRATLLEVHL
+ETGRTHQIRVHTSALRHPCVGDLTYGADPRLAAELGLTRQWLHAHRLSFPHPVTGEPVSV
+TSEHPDDLAHALARLRRDG------S
+>KBS0714_MOLHKGIG_01344
+MGMRPGLTERLEVTEAEAGRRVDAVLADAFGVSRSLLADWFSRGLVRAESRSGRRDRVLA
+KSAKAVAGETLAVDVPDDPDPLEVRAERVDALSILYEDEDLVAVDKPTGVAAHPSPGWVG
+PTVVGALAALGYDITTSGAPERQGIVHRLDVGTTGVMVVAKTERAYTAMKDQFRERVPEK
+VYHAVVQGIPDPLSGTVDAPIGRHPGHHWKFAVLEDGRPSVTHYETLEVFGRATLLEVHL
+ETGRTHQIRVHTSALRHPCVGDLTYGADPRLAAELGLTRQWLHAHRLAFPHPVTGEPVTI
+TSPYPDDLAHALAALRGDE------D
+>KD337_NAFOICDF_01444
+MGLRPGLTERLAVTEDDAGRRADAVLADAFGVSRASLADLFSRGLVRAESRTGRRDRVLA
+KSAKAVAGETLAVDVPVDPDPLEVRAERVDAMTVLYEDDDLLAVDKPTGVAAHPSPGWFG
+PTVVGGLAGLGRRISTSGAPERQGIVHRLDVGTTGVMVVAKSERAYTALKDQFRERVPEK
+VYHAVVQGMPDPLEGTIDAPIGRDPNHHWRFAVLEGGRPSVTHYETVEAFGRATLLEIHL
+ETGRTHQIRVHTSALRHPCAGDLTYGADPRLAAELGLTRQWLHAHRLALPHPATGERLEI
+VSPYPDDLAHALRVLRGEDRGAAPDA
+>SA211_MHAAABBN_01064
+MGMRPGLTERLQVAEAEAGRRVDAVLADAFGVSRSLLADWFSRGLVRAESRSGRRDRVLA
+KSAKAVAGETLAVDVPDDPDPLEVRAERVDALSILYEDEDLVAVDKPTGVAAHPSPGWVG
+PTVVGALAALGYDITTSGAPERQGIVHRLDVGTTGVMVVAKTERAYTAMKDQFRERVPEK
+VYHAVVQGIPDPLSGTVDAPIGRHPGHHWKFAVLDDGRPSVTHYATLEVFGRATLLEVHL
+ETGRTHQIRVHTSALRHPCVGDLTYGADPRLAAELGLTRQWLHAHRLAFPHPVTGEPVTI
+TSPYPDDLAHALAALRGDE------D
+>TT9_LFPAFLNI_01299
+MGMRPGLTERLEVTEAEAGRRVDAVLADAFGVSRSLLADWFSRGLVRAESRSGRRDRVLA
+KSAKAVAGETLAVDVPDDPDPLEVRAERVDALSILYEDEDLVAVDKPTGVAAHPSPGWVG
+PTVVGALAALGRDISTSGAPERQGIVHRLDVGTTGVMVVAKTERAYTAMKDQFRERVPEK
+VYHAVVQGIPDPLSGTVDAPIGRHPGHHWKFAVLDDGRPSVTHYETLEVFGRATLLEVHL
+ETGRTHQIRVHTSALRHPCVGDLTYGADPRMAAELGLTRQWLHAHRLAFPHPVTGEPVTI
+TSPYPDDLAHALAALRGDA------D
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001038.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001038.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f8f664baefa48fedcc15f260e97d5301a49e1096
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001038.fa
@@ -0,0 +1,80 @@
+>AS2_ACLBLIBL_01549
+MTVSADARADAVKDGGFVHLHTHTEYSMLDGAAKLDDLFAEAERLGMDSLAITDHGYLFGAYDFWSQAKSAGIRPIIGLE
+AYVTPGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSENTAGMHNLFRMSSIASLDSVYAKWPRLDRELLSQYSSG
+LIATTGCPSGEVQTRLRLGQYDEAVAAAAEFRDIFGKDNYYCEIMHHGLDIERRVMTDLRRLAKDLGLPFVATNDLHYTH
+EHDAKAHEALLALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCDVEFDTKANYMPV
+FPTPEGEDETSWLIKEVASGLAYRYPDGVPDHVRKQADYELDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGS
+MVAYALRITDLDPLKHGLIFERFLNPDRVSMPDFDVDFDDRRRPEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV
+MDQPFSLGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAKGLEGLKRQWGVHAAGVIMS
+SEPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISDAIENVKANQGVELDLETLDVDDAASYDLLAR
+GDTLGVFQLDGGPMRSLLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGL
+IVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFSDYAFNKAHSAA
+YGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGAN
+VVKGMVQGREDKGAYTGFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVSQKRKEDHGEFTFD
+LFALGGPQE--DESDAADGVAVPDLPEWAKKEKLAYEREMLGLYVSDHPLQGLDGVLAQHADTQITRVLDDDGPADGSQV
+TIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFFGQVYAPIAMMLAEDLVVAVKGRVQRRDDGSVSLSAMELTIPE
+LSDGPGGPVRISMPSFKATEQVVGQLADVLRTHEGSSEVRLSLVGQRGTQEFQLGPQFRVNPNPALFGDLKILLGPACLS
+>KBS0714_MOLHKGIG_01343
+MTVSADARPDAVKDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAGVKPIIGLE
+AYVAPGQQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSIASLDSVYAKWPRLDRELLSQYSKG
+LIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIFGKDNYYCEIMHHGLDIERRVMTDLRRLAKDLGLPFVATNDLHYTH
+EHDAKAHEALLALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKANYMPV
+FPTPEGEDETSWLIKEVASGLAYRYPDGVPDHVRKQADYELDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGS
+MVAYALRITDLDPLKHGLIFERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV
+MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAKGLEGLKRQWGVHAAGVIMS
+SVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISDALENVKANQGVDLDLETLDVDDPAAYELLAR
+GDTLGVFQLDGGPMRSLLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGL
+IVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFSDYAFNKAHSAA
+YGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGAN
+VVKGMVQGREEKGSYTGFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFD
+LFALGGGDE--DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQITRVLDDDGPADGAIV
+TIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFFGQVYAPIAMMLAEDLVVAVKGRVQRRDDGSVSLSAMELTIPE
+LSDGPGGPVRITLPAFKATEQVMGQLADVLRTHEGSSEVRLSLVGQRATQEFQLGPQFRVSPNPALFGDLKILLGPACLG
+>KD337_NAFOICDF_01445
+MSVQQETTAEATRDGGFVHLHTHTEYSMLDGAAKLDELFAEANRLGMDSLAITDHGYLFGAFDFWKKATDAGIKPIIGLE
+AYLTPGQQHRSDKEKIRWGEPHQRGDDVSGGGAYTHMTMLAESTQGMHNLFRMGSIASLDSVYAKWPRIDRELLSQYSSG
+LIATTGCPSGEVQTRLRLGQYKEAVEAAAEFRDIFGRDNFYCEVMQHGLDIEKRVVEDLRRLAKDLGLPFVATNDLHYTH
+EHDAKAHEALLAIQSGSKLNEPTYDQGGSRFAFSGTDYYLKSPRQMRELFAELPEACDNTLLIAERCETSFDTSANYMPR
+FPTPEGEDETSWLIKEVAKGLAYRYPEGVPDHVRKQADYELDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGS
+MVAYALRITDLDPLRHGLIFERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV
+MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPEAKRYAEAGEFRELVAADPVAKQVFETAKGIEGLKRQWGVHAAGVIMS
+SHPVIDVIPIMRRLQDGQVITQFDYPTAEGLGLIKMDFLGLRNLTIISDAIENIRANRGVDLDLEHLDVDDAESYALLAR
+GDTLGVFQLDGGPMRALLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLKDILDTTYGL
+IVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEGAVKALWDILLPFSDYAFNKAHSAA
+YGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVLPPDVNESFLNFTPVGDDIRFGMGAVRNVGGN
+VVKGMVQAREEKGLYTGFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVQQKRKEDHGEFTFD
+LFALGGAADAADDSDASDGVAVPDLPEWPKKERLAFEREMLGLYVSDHPLQGLDGVLSQFADTQITRILDDDGPADGAHV
+TIAGLITTLERRIAKSSGNAYARCEIEDLGGSLDVMFFGQVYAPIAMMLAEDLVVAVKGRVQRRDDGSVVLSAMELAIPE
+LTDATGGPVRITMPAFKATERVVGQLGDVLRTHEGSTEVRLSLTGQRGVQEFQLGPQYRVTPNPALFGDLKILLGPSCLG
+>SA211_MHAAABBN_01063
+MTVSADARADAVKDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAGVKPIIGLE
+AYVAPGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSIASLDSVYAKWPRLDRELLSQYSKG
+LIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIFGKDNYYCEIMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTH
+EHDAKAHEALLALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKANYMPV
+FPTPEGEDETSWLIKEVASGLAYRYPDGVPDHVRKQADYELDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGS
+MVAYALRITDLDPLKHGLIFERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV
+MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAKGLEGLKRQWGVHAAGVIMS
+SAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISDALENVKANQGVDLDLETLDVDDPAAYELLAR
+GDTLGVFQLDGGPMRSLLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGL
+IVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFSDYAFNKAHSAA
+YGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGAN
+VVKGMVQGRENEGSYTGFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFD
+LFALGGGDE--DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQITRVLDDDGPADGAIV
+TIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFFGQVYAPIAMMLAEDLVVAVKGRVQRRDDGSVSLSAMELTIPE
+LSDGPGGPVRITLPAFKATEQVMGQLADVLRTHEGSSEVRLSLVGQRATQEFQLGPQFRVSPNPALFGDLKILLGPACLG
+>TT9_LFPAFLNI_01298
+MTVSADARADAVKDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKATAAGVKPIIGLE
+AYVAPGQQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSIASLDSVYAKWPRLDRELLSQYSKG
+LIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIFGKDNYYCEIMHHGLDIERRVMTDLRRLAKDLGLPFVATNDLHYTH
+EHDAKAHEALLALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKANYMPV
+FPTPEGEDETSWLIKEVASGLAYRYPDGVPDHVRKQADYELDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGS
+MVAYALRITDLDPLKHGLIFERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV
+MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAKGLEGLKRQWGVHAAGVIMS
+SVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISDALENVKANQGVDLDLETLDVDDPAAYELLAR
+GDTLGVFQLDGGPMRSLLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGL
+IVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFSDYAFNKAHSAA
+YGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGAN
+VVKGMVQGREEKGSYTGFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFD
+LFALGGGDE--DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQITRVLDDDGPADGAIV
+TIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFFGQVYAPIAMMLAEDLVVAVKGRVQRRDDGSVSLSAMELTIPE
+LSDGPGGPVRITLPAFKATEQVMGQLADVLRTHEGSSEVRLSLVGQRATQEFQLGPQFRVSPNPALFGDLKILLGPACLG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001042.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001042.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3906b8631ad3260ea6525e92fed2021413b763ff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001042.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01554
+--------------------------------------------------------MLTA
+YDAMTAALFDEAGIEVLLVGDSVGNTVLGHSSTLPVTLDQMILFSQAVVRGAQRALVVAD
+LPFGSYEASPQQAVESAVRLVKESGAHAVKVEGDERFAEHVAAMTAAGVAVIAHIGFTPQ
+SEHVIGGYRVQGRGEGAVEAMTASARALEAAGAFAVLMEMVPSDVAAAVDAALRVPTVGI
+GAGPGTTGQVLVWQDMLGLREGRTPRFVRQYARLHEVIGAGVRAYRRDVLDGAFPAPEHG
+FEA
+>KBS0714_MOLHKGIG_01338
+MSA------PQSPRQPDDTAPYGPP----------APSRYRTVHLQRAKDEGRRFAMLTT
+YDAMTAALFDEAGVEVLLVGDSVGNTVLGHPTTLPVTLDQMILFTQAVVRGAERALVVAD
+LPFGSYEASPRQAVESAVRLVKESGAHAVKVEGDERFAEHVAAMTAAGVAVMAHIGFTPQ
+SEHVLGGYRVQGRGAGAVERMTASARALEAAGAFAVLMEMVPSDVAAAVDAALRVPTVGI
+GAGPGTTGQVLVWQDMLGLREGRVPRFVRQYARLHEVVGDAVRAYRADVLDGAFPAPEHG
+FQG
+>KD337_NAFOICDF_01450
+MDSRTVTPPASSPAASEAAAPYGGAATAAAAAPVEAPARYRTVHLQRAKDEGRRFAMLTT
+YDAMTAALFDEAGVEVLLVGDSLGNTVLGHGSTLPVTLEDMIVFSAAVARGARRAFVLAD
+LPFGSYEASPEQAVRAGVRLMKEAGVHGVKVEGDERFAPHIAAMVAAGVPVMGHIGFTPQ
+SEHVLGGYRVQGRGEGAAERLIASARALEDAGAFAVLMEMVPSDVAAAVDAALRVPTVGI
+GAGPKTTGQVLVWQDMLGLGAGRTPRFVKRYADLRAVMGDAVRAYRADVLSGAFPDPAHA
+FES
+>SA211_MHAAABBN_01058
+MSA------PQSPRQPDDTAPYGPP----------APSRYRTVHLQRAKDEGRRFAMLTT
+YDAMTAALFDEAGVEVLLVGDSVGNTVLGHPTTLPVTLDQMILFTQAVVRGAERALVVAD
+LPFGSYEASPRQAVESAVRLVKESGAHAVKVEGDERFAEHVAAMTAAGVAVMAHIGFTPQ
+SEHVLGGYRVQGRGAGAAERMTASARALEAAGAFAVLMEMVPSDVAAAVDAALRVPTVGI
+GAGPGTTGQVLVWQDMLGLREGRVPRFVRQYARLHEVVGEAVRAYRADVLDGAFPAPEHG
+FEG
+>TT9_LFPAFLNI_01293
+MSA------PQSPRQPDDTAPYGPP----------APSRYRTVHLQRAKDEGRRFAMLTT
+YDAMTAALFDEAGVEVLLVGDSVGNTVLGHPTTLPVTLDQMILFTQAVVRGAERALVVAD
+LPFGSYEASPRQAVESAVRLVKESGAHAVKVEGDERFAEHVAAMTAAGVAVMAHIGFTPQ
+SEHVLGGYRVQGRGAGAAERMTVSARALEAAGAFAVLMEMVPSDVAAAVDAALRVPTVGI
+GAGPGTTGQVLVWQDMLGLREGRVPRFVRQYARLHEVVGEAVRAYRADVLDGAFPAPEHG
+FEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001043.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001043.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6b7008892c256e5a7e08e1194f614000e385fa96
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001043.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01555
+MDRQQDYVLRTIEDRDVRFVRLWFTDVVGTLKSVALSPAEVENAFAEGLGFDGSSIDGYT
+RISESDMLLQPDPATFQILPWRGDGGQSSRMFCDVLTPDGRPAPADPRHVLRRVLEKASD
+MGFSCFMHPEIEFYLLTSDQPGPDGRPVPVDRAGYFDNVPGSDAADFRRDAVTLLESMGI
+SVEFSHHENGPGQNEIDLRAADALTTADNVMTFRTVVKEVAAAQGTYATFMPKPFSEHPG
+SGMHTHISLFEGDSNAFYDPADEFRLSVTGRRFIAGLLRHSVEISAVTHQFVNSYKRLWG
+GGEAPSYVSWGHNNRSALVRVPLYKPDKAGSARIEYRGIDASANPYLAYALLLAAGLKGI
+EEGYELPESAAEDVSALTTHERRVLGHDPLPGTLHDALRAAEESEFVASVLGEHVFDALL
+RNKRQEWDDYRVEVTPYELRRYLSGL
+>KBS0714_MOLHKGIG_01336
+MDRQQDYVLRTIEDRDVRFVRLWFTDVIGTLKSVALSPAEVENAFTEGLGFDGSSIDGYT
+RISESDMLLQPDPSTFQILPWRGDQGQSSRMFCDVLTPDGRPAPADPRHVLRRVLDRAAD
+RGFTCFTHPEIEFYLLQSDQPGPDGEPVPVDRAGYFDNVPGSDAADFRRDAVSLLEGMGI
+SVEFSHHENGPGQNEIDLRAADALTTADNVMTFRTVVKEVAAAQGTYATFMPKPFSHHPG
+SGMHTHFSLFEGDANAFYDPADEFRLSVTGRRFIAGLLRHSVEITAVTHQFVNSYKRLWG
+GGEAPSYTSWGHNNRSALVRVPLYKPDKAGSARIEYRGIDASANPYLAYALLIAAGLKGI
+EEGYEVPEAAAEDISALTTHERRVLGHVPLPGTLHDALRTAEESEFVASVLGEHVFDALL
+RNKRQEWDDYRVEVTPYELRRYLSGL
+>KD337_NAFOICDF_01451
+MDRQQDFVLRTIEDRDVRFVRLWFTDVIGTLKSVALAPAEVEAAFTEGLGFDGSSIDGYT
+RISESDMLLQPDPATFQILPWRGEAGQTSRMFCDVLTPDGRPAPADPRNVLRRVLDKASD
+MGFSCYTHPEIEFYLLASDRPGPDGRPVPVDSAGYFDHVPGGAAQDFRRDAVTLLEDMGI
+SVEFSHHENGPGQNEIDLRAADALTTADNVQTFRTIMKEVAARQGHYATFMPKPFGDQPG
+SGMHTHFSLFEGDSNAFYDPADEFRLSVTGRRFIAGLLKHSVEISLVTHQFVNSYKRLWG
+ADEAPAYVSWGHNNRSALVRVPLYKPDKAGSARIEYRGLDASANPYLAYALLLAAGLKGV
+EENYDLPEPASEDVGALTPQERRVLGHVSLPGTLHDAVRAAEESEFVADVLGEHVYEALL
+RNKRQEWDDYRVEITPYELRRYMTGL
+>SA211_MHAAABBN_01057
+MDRQQDYVLRTIEDRDVRFVRLWFTDVIGTLKSVALSPAEVENAFTEGLGFDGSSIDGYT
+RISESDMLLQPDPSTFQILPWRGDQGQSSRMFCDVLTPDGRPAPADPRHVLRRVLDRAAD
+QGFTCFTHPEIEFYLLQSDQPGPDGEPVPVDRAGYFDNVPGSDAADFRRDAVSLLEGMGI
+SVEFSHHENGPGQNEIDLRAADALTTADNVMTFRTVVKEVAAAQGTYATFMPKPFSEHPG
+SGMHTHISLFEGDSNAFYDPADEFRLSVTGRRFIAGLLRHSVEISAVTHQFVNSYKRLWG
+GGEAPSYVSWGHNNRSALVRVPLYKPDKAGSARIEYRGIDASANPYLAYALLIAAGLKGI
+EEGYELPESAAEDVSALTTHERRVLGHVPLPGTLHDALRAAEESEFVASVLGEHVFDALL
+RNKRQEWDDYRVEVTPYELRRYLSGL
+>TT9_LFPAFLNI_01292
+MDRQQDYVLRTIEDRDVRFVRLWFTDVIGTLKSVALSPAEVENAFTEGLGFDGSSIDGYT
+RISESDMLLQPDPSTFQILPWRGDQEQSSRMFCDVLTPDGRPAPADPRHVLRRVLDRAAD
+RGFTCFTHPEIEFYLLQSDQPGPDGEPVPVDRAGYFDNVPGSDAADFRRDAVSLLEGMGI
+SVEFSHHENGPGQNEIDLRAADALTTADNVMTFRTVVKEVAAAQGTYATFMPKPFSHHPG
+SGMHTHFSLFEGDANAFYDPADEFRLSVTGRRFIAGLLRHSVEITAVTHQFVNSYKRLWG
+GGEAPSYTSWGHNNRSALVRVPLYKPDKAGSARIEYRGIDASANPYLAYALLLAAGLKGI
+EEGYELPESAAEDVSALTTHERRVLGHVPLPGTLHDALRAAEESEFVASVLGEHVFDALL
+RNKRQEWDDYRVEVTPYELRRYLSGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001044.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001044.fa
new file mode 100644
index 0000000000000000000000000000000000000000..943b18e7c032685aff230451af0e167a1e5e1411
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001044.fa
@@ -0,0 +1,75 @@
+>AS2_ACLBLIBL_01556
+MSALPDAATADA-PDRRALAQAGVADARRVQSLLASPEFEGADVAPLVKRLGHAADPDRALLLWVRLAEREPRVHRALRD
+PETTARLLRLLGASEALGEFLIRRPEHLDLVLEPESAAATAPALAQPDPADGEEWADEPAALRRLLLEAVEADPDADRPR
+AGLTGADAAVALRRAYRRQLAAIALRDLDSADPAAVMPSVGRWLADLAGAAVDAALAVSRATLAEREGPAVDRVDLAVIG
+MGKCGARELNYISDVDVVFVHELLDPGPDAAGEAGADGADGEASDAVDGTRAAVLAAELAAGIGRVIQAAAPEPGLWEVD
+ANLRPEGKDGALSRTLDSHAEYYRRWAHGWEFQALLKARPIAGSADLGARYLERIWPRVWESSAREGFVDSVRAMRSRVL
+ETIAPAEREREIKLGSGGLRDVEFTAQLLQLVHGRADESIRVRGTLDAVRALHEASYISTRDAAAFDEHYRWLRTLEHRI
+QLVHLRRTHLMPVKDEALRIVARSLRGAQETGPATGEDLQAAFTRVRRAVRGLHETVFYRPLLSTTAALSDDEVRLSAEA
+VRERLAALGYRDPKGALRHIEALTQGVSRRAAIQRQLLPAMLGWFAEGADPDGGLLAFRRLSESLGGTAWYLRMLRDSSD
+AARRLCLVLAASRFVGDLLEHSPEAVAWVGDDRELEPRGTVQLWRQADARLDRRIEAQETPAAVRHVRQVRRSETLRVAL
+ADISGLLDLEAVTGALSDIDQITVVGALRVASRAVVGDADPLTDVLVVAMGRQGGREITYGSDLDALFVHRPRPGVDEGR
+AREQAEEVVRTLMSLLHRPATPPLPGERPLEVDADLRPEGRQGPLVRTLDSYREYYGRWAEVWERQALLRARPLAGDDDL
+ATDFRRWADGVRYAGDLTTADAREIRRIKARVEAERLPRGADPSRHVKLGRGGLSDVEWLVQSLQLRHAGEVEDLRVTGT
+LPALRAIARHGLLPEAEVAVLEEAWLLASRIRAAVLLWTGKVGDVLPTNMRDLEAIARLSGVGTAGG-ELEERYLRVTRL
+ARQVFEARFYGL
+>KBS0714_MOLHKGIG_01335
+MSSLSTTGALPAVPDRRTLAHAGVADAGRVQTLLTSPEFEGVDVRPLVELLGHAADPDRALLLWVRLAEREPRVHHALRD
+PETTARLLRLLGASEALGEFLIRRPEHLDLVLDPDAAAATAPALAQPDPADGEPWGDASATLRRLLLDSVGADPDTDRPV
+AAVTGKDAAVALRRAYRRQLAAIALRDLDSAEPTAAMPSVGRWLADLAGATVDAALAVSRAVLTEREGPVVDRVDLAVIG
+MGKCGAGELNYVSDVDVVFAH---------AVREAADGADPDAE-VPDGPRAAALAAELAAGIGRVIQGAAPEPGLWEVD
+ANLRPEGKDGALSRTVESHAEYYRRWAHGWEFQALLKARPIAGSPQLGERYIAEIWPRVWESSSRDGFVESVRAMRARVL
+DTLAPAEREREIKLGPGGLRDVEFTAQLLQLVHGRADESLRVRGTLDAVRALHAASYITTRDARAFDEHYRWLRTLEHRI
+QLVHLRRTHLMPVKEEARRVVARSMRGAADRGPATGEDLQAEFTRVRRAVRGLHETVFYRPLLSTTAALSAEDVRLSAEA
+VRDRLAALGYRDPQGALRHIEALTQGVSRRAAVQRQLLPAMLGWFARGADPDGGLLAFRRLSESLGGTAWYLRMLRDSSD
+AARRLCLVLSGSRFVGDLLEHSPEAVAWVGDDRELDPRGAIQLWRQVDARLDRRVAAQEAPAAVRHVRQVRRSETLRVAL
+ADISGLLDLEAVTGALSDIDQVTVVGALRVASRAVVGDADPLTDVLVVAMGRQGGREITYGSDLDALFVHRPRPGVDEGR
+AREQAEEVVRTLMSLLHRPATPPLPGERPLEVDADLRPEGRQGPLVRTLDSYREYYGRWAEVWERQALLRARPLAGDDDL
+ATDFRRWADGVRYAGDLTTADAREIRRIKARVEAERLPRGADPSRHVKLGRGGLSDVEWLVQSLQLRHAGEVEDLRVTGT
+LPALRAIARHGLLPEAEVAVLEEAWLLATRIRAALLLWTGKVSDVLPTNMRDLEAVARLSGVGTAGG-ELEERYLRVTRL
+ARQVFETRFYGL
+>KD337_NAFOICDF_01452
+MAPTPDSHVPGP---RRALVHAGVADLTRAERLLSSPELAEQDADAALAALAHAADPDSALLLYIRLAERDPQVHRVLAE
+ADRARDLLRLLGASEALGEFLIRRPEHLDLVLDPARAAATAPALAQQDPTDGGDWHDEPAALRALLLEAVGADPAADQPV
+AGLTGADASVALRRAYRRQLTAIALADLASREPTLVMPAVGRWLADLAGAALEAALAVSRAELRAREGAAVDCVELAVIG
+MGKCGARELNYVSDVDVVFVHDVLEPG------------APDA---PSAQEAARLAAELAAGISRVLSGPAPEPGLWEVD
+ANLRPEGRDGALSRTLDSHVEYYRRWAHGWEFQALLKARPVAGSPALGERYVAAVWPRVWESSAREGFVENVRAMRTRVL
+DTIARDERDREIKLGAGGLRDVEFTAQLVQLVHGRADESVRVRGTLDALRVLHAASYISSRDMRAFDAAYRWLRLLEHRI
+QLVHLRRTHLMPVKEGPRRVVARSMRGAGDVHPVAGDDLQDRFSRVRREVRALHETVFYRPLLSTTAALSDEDVRLSADA
+VQARLSALGYRDPRRALAHIEALTRGVSRRAAVQRQLLPAMLGWFADGADPDAGLLAFRRLSESLGSSPWFLRMLRDSTD
+AARRLCLVLAGSRRVGDLLEHAPESVAWIGETRELAPRGLSALTSEVTARLDRRSPEESAAQVIRHVRQIRQREILRTAL
+ADITGVVGLEEVGHALADVDQAAVQGALRVAGQAVLDGADPLTEVVVVAMGRQGGREIAYGSDLDAMFVHRPLAGADETA
+AAAQAEAVARQLMALLQQPAAPPLPSEQPLDVDADLRPEGRQGPLVRTLDSYREYYARWAEVWERQALLRARVVAGPAGL
+AEEFTAWADGVRYGDELSAGDAREIRRIKARVEAERLPRGADPARHVKLGRGGLSDVEWLVQSLQLRHAHDEPELRVTGT
+LPALRALARLDLLPPSEAALLEEAWLLATRVRSALVLWTGKGSDVLPTNARDLGALARLAGDACGGGVAFEERYLRVTRQ
+ARQVFEQRFYGL
+>SA211_MHAAABBN_01056
+MSALPDAATADA-PDRRTLAHAGVADAGRVQTLLTSPEFEGVDVRPLVELLGHAADPDRALLLWVRLAEREPRVHHALRD
+PGTTARLLRLLGASEALGEFLIRRPEHLDLVLDPDAAAATAPALAQPDPTAGEPWGDASAALRRLLLDSVGADPDADRPL
+AAVTGKDAAVALRRAYRRQLAAIALRDLDSAEPTAAMPSVGRWLADLAGATVDAALAVSRAVLTEREGPVVDRVDLAVIG
+MGKCGAGELNYVSDVDVVFAH---------AVREAADGADPDAQ-VPDGPRAAALAAELAAGIGRVIQGAAPEPGLWEVD
+ANLRPEGKDGALSRTVESHAEYYRRWAHGWEFQALLKARPIAGSPQLGERYIAEIWPRVWESSARDGFVESVRAMRARVL
+DTLAPAEREREIKLGPGGLRDVEFTAQLLQLVHGRADESLRVRGTLDAVRALHAASYVTTRDARAFDEHYRWLRTLEHRI
+QLVHLRRTHLMPVKEEARRVVARSMRGAADRGPATGEDLQAEFTRVRRAVRGLHETVFYRPLLSTTAALSAEDVRLSAEA
+VRDRLAALGYRDPQGALRHIEALTQGVSRRAAVQRQLLPAMLGWFARGADPDGGLLAFRRLSESLGGTAWYLRMLRDSSD
+AARRLCLVLSGSRFVGDLLEHSPEAVAWVGDDRELDPRGAIQLWRQVDARLDRRVAAQEAPAAVRHVRQVRRSETLRVAL
+ADISGLLDLEAVTGALSDIDQITVVGALRVASRAVVGDADPLTDVLVVAMGRQGGREITYGSDLDALFVHRPRPGVDEGR
+AREQAEEVVRTLMALLQKPVAPPLPGERRLEVDADLRPEGRQGPLVRTLDSYREYYGRWAEVWERQALLRARPLAGDDDL
+ATDFRRWADGVRYAQDLSAADAREIRRIKARVEAERLPRGADPARHVKLGRGGLSDVEWLVQSMQLKHAGQIEDLRVTGT
+LPALRAIARHDLLPESEVAVLEEAWLLATRIRAALLLWTGKVSDVLPTNMRDLEAVARLSGVGTTGG-ELEERYLRVTRL
+ARQVFETRFYGL
+>TT9_LFPAFLNI_01291
+MSALPDAATADA-PDRRTLAHAGVADAGRVQTLLTSPEFEGVDVRPLVELLGHAADPDRALLLWVRLAEREPRVHHALRD
+PGTTARLLRLLGASEALGEFLIRRPEHLDLVLDPDAAAATAPALAQPDPTAGEPWGDASAALRRLLLDSVGADPDADRPL
+AAVTGKDAAVALRRAYRRQLAAIALRDLDSAEPTAAMPSVGRWLADLAGAAVDAALAVSRAVLTEREGPVVDRVDLAVIG
+MGKCGAGELNYVSDVDVVFAH---------AVREAADGADPDAQ-VPDGPRAAALAAELAAGIGRVIQGAAPEPGLWEVD
+ANLRPEGKDGALSRTVESHAEYYRRWAHGWEFQALLKARPIAGSPQLGERYIAEIWPRVWESSARDGFVESVRAMRARVL
+DTLAPAEREREIKLGPGGLRDVEFTAQLLQLVHGRADESLRVRGTLDAVRALHAASYVTTRDARAFDEHYRWLRTLEHRI
+QLVHLRRTHLMPVKEEARRVVARSMRGAADRGPATGEDLQAEFTRVRRAVRGLHETVFYRPLLSTTAALSAEDVRLSAEA
+VRDRLAALGYRDPQGALRHIEALTQGVSRRAAVQRQLLPAMLGWFARGADPDGGLLAFRRLSESLGGTAWYLRMLRDSSD
+AARRLCLVLSGSRFVGDLLEHSPEAVAWVGDDRELDPRGAIQLWRQVDARLDRRVAAQEAPAAVRHVRQVRRSETLRVAL
+ADISGLLDLEAVTGALSDIDQITVVGALRVASRAVVGDADPLTDVLVVAMGRQGGREITYGSDLDALFVHRPRPGVDEGR
+AREQAEEVVRTLMSLLHRPATPPLPGERPLEVDADLRPEGRQGPLVRTLDSYREYYGRWAEVWERQALLRARPLAGDDDL
+ATDFRRWADGVRYAGDLTTADAREIRRIKARVEAERLPRGADPSRHVKLGRGGLSDVEWLVQSLQLRHAGEVEDLRVTGT
+LPALRAIARHGLLPEAEVAVLEEAWLLATRIRAALLLWTGKVSDVLPTNMRDLEAVARLSGVGTAGG-ELEERYLRVTRL
+ARQVFETRFYGL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001049.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001049.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f8265b63decb6c7e013932bf2055194e0e3782a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001049.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01562
+MPETLLPPLRVLGLAPDLVDYHAAWDAQRALHADVVAGRSDGEFLLLEHEAVYTAGRRTE
+DAERPTDGAPVVDVDRGGKITWHGPGQLVGYPVVRLRDRAHVKDYVWFLEELLIRTAAEF
+GVTAVRVDGRAGIWVLADRDDDGTARPDRKVGAIGLSIHDGVSMHGFALNCSNSLAPYEG
+IIACGITDAATTTLSVETGRTITPADVVPVLTRHLDELGPAYIAVTPTEGIPA
+>KBS0714_MOLHKGIG_01329
+MPETLLPPLRLLGLAPDLVDYHAAWDAQRALHADVVAGRSDGEFLLLEHEAVYTAGRRTE
+DAERPTDGAPVVDVDRGGKITWHGPGQLVGYPVVRLRDRAHVKDYVWFLEELLIRTAAEF
+GVTAVRVDGRAGIWVLADRDDDGTARPDRKVGAIGLSIHDGVSMHGFALNCSNSLAPYEG
+IIACGITDAATTTLSVETGRTITPADVVPVLTRHLDELGPAYIAVTPTEGIPA
+>KD337_NAFOICDF_01458
+MPHALLPPVRVLGLAPDLIDYEEGWALQRTLHADVVAGRSDGEILLLEHEAVYTAGRRTE
+DADRPTDGAPVVDVDRGGKITWHGPGQLVGYPVVRLRDRAHVKDYVWFLEEVLIRTAAEF
+GVTAVRVDGRAGIWITA---REGDPRPDRKLGAIGLSIHDGVSMHGFSFNCSNSLTPYET
+IIACGIADASTTTLSVETGREVTPVDVLPVLVRHLEDLGPEHIALTPTEGTPA
+>SA211_MHAAABBN_01050
+MPETPLPPLRVLGLAPDLVDYHAAWDAQRALHADVVAGRSDGEFLLLEHEAVYTAGRRTE
+DAERPTDGAPVVDVDRGGKITWHGPGQLVGYPVVRLRDRAHVKDYVWFLEELLIRTAAEF
+GVTAVRVDGRAGIWVLADRDDDGTARPDRKVGAIGLSIHDGVSMHGFALNCSNSLAPYEG
+IIACGITDAATTTLSVETGRTITPADVVPVLTRHLDELGPAYIAVTPTEGIPA
+>TT9_LFPAFLNI_01285
+MPETLLPPLRVLGLAPDLVDYHAAWDAQRALHADVVAGRSDGEFLLLEHEAVYTAGRRTE
+DAERPTDGAPVVDVDRGGKITWHGPGQLVGYPVVRLRDRAHVKDYVWFLEELLIRTAAEF
+GVTAVRVDGRAGIWVLADRDDDGTARPDRKVGAIGLSIHDGVSMHGFALNCSNSLAPYEG
+IIACGITDAATTTLSVETGRTITPADVVPVLTRHLDELGPAYIAVTPTEGIPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001051.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001051.fa
new file mode 100644
index 0000000000000000000000000000000000000000..16efeb6073269edb216bcbf35b431e7199bc3f82
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001051.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01564
+MDILHSILVAVHIVSAAAIVGGWFAHFRNPTVTTSQWWGSVGMIVSGVVLFGLAMSGEPN
+HMKLGVKFLIGVIVFVAALIGRRKSNRGEVVPTGLAHAVGGLGLVNILVAVLWQ
+>KBS0714_MOLHKGIG_01327
+MDILHSILVAVHIVSAAAIVGGWFAHFRNPTVTTSQWWGSVGMIVSGVVLFGLAMSGEPN
+HMKLGVKFLIGVIVFVAALIGRRKSNRGEVVPTGLAHAVGGLGLVNILVAVLWQ
+>KD337_NAFOICDF_01460
+MEILHNVVVAIHIVSAAAIVGGWFAHFKNPTVTVSQWWGALGMILSGVVLFGWAMTGEPN
+HMKLGIKFLIGVIVFIAALLGRRKANRGEVVPKGLAHAVGGMGLVNILVAVLWS
+>SA211_MHAAABBN_01048
+MDILHSILVAVHIVSAAAIVGGWFAHFRNPTVTTSQWWGSVGMIVSGVVLFGLAMSGEPN
+HMKLGVKFLIGVIVFVAALTGRRKSNRGEVVPTGLAHAVGGLGLVNILVAVLWQ
+>TT9_LFPAFLNI_01283
+MDILHSILVAVHIVSAAAIVGGWFAHFRNPTVTTSQWWGSVGMIVSGVVLFGLAMSGEPN
+HMKLGVKFLIGVIVFVAALIGRRKSNRGEVVPTGMAHAVGGLGLVNILVAVLWQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001055.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001055.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dd3e4a8a2ee62789b832962c14dcd90ea7035029
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001055.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01568
+MQDAAPIYTRHDAEA---VPPGLALLVTLTGHMDAGRVSRQVRTALREHLEHRTVASFDV
+DSMFDYRARRPRMRFDRDRYRDLRLPTLEVQLVEDLIGHPFLLLAGPEPDFRWQAVVEAV
+LGLAEEWQVDSLTFLDAAPLPVPHTRRIGVTTHGTRAEAVEGLSTWSPEAEIVSGLLQML
+ELRADEAGIPTAGYTVHVPHYVAEASFPQAAVAALEYAGAAMGLMLPSDDLRDASREIEA
+ELERQVSGSEEVQQMIAGLERNFDQNAEDQERSLLETEEGLPDGDELASAVEAYLAGRAG
+---PDGSAPAQEDGPPRPSTDDER
+>KBS0714_MOLHKGIG_01323
+MQDAAPLYTRHEGAP---VPPGLGMLVALTGHMDAGRVARQVRAALHEHLTHRTVVSFDV
+DSMFDYRARRPRLRFDRDRYRDLRLPALEVQLVEDLLGHPFLLLSGPEPDFRWQAVTEAV
+LGLAQEWEVDSLTFLDAAPLPVPHTRRLGVTTHGSRADAVEGLSTWSPQADIVAGLLQML
+ELRAEEADLPTAGYTVHVPHYVAEASFPQAAVAALEYAGAAMGLMLPSDDLRDASRDIEA
+ELERQVSGSGEIQQMIAGLERNYDQNAEDQERSLLETEQGLPDGDELASAVEAYLAARDA
+---GGGSAPAQEDGPGRPSTGDGD
+>KD337_NAFOICDF_01464
+MQDPTQLYTRHDAAPGDAVPDGLGVLVTLTGHLDAGHVGRQVGAGLRERLAHRTVARFDV
+DQLHDYRARRPRIRFDRERYTDLRMPALDVELMEDLLGHPFLLVAGPEPDMQWGRFTAAL
+LGLLQEWEASSATFLDAAPLPVPHTRRIGVTTHGSRADALEGLSTWSPEADVVAGLVQVL
+ELRAEEAGLPTAGYTVHVPHYVAEAGYPQAAVAALEYAGASLDLMLPTDELRDAAREVDA
+ELERQVAGSPEVQTMITGLEKNYDQNSEGQERSLLESHGELPDGDELASAVEAYLAERDE
+SVQPRPTTPAQDDEGPAPSPDPQV
+>SA211_MHAAABBN_01044
+MQDAAPLYTRHEGAP---VPPGLGMLVALTGHMDAGRVARQVRAALHEHLTHRTVVSFDV
+DSMFDYRARRPRLRFDRDRYRDLRLPALEVQLVEDLLGHPFLLLSGPEPDFRWQAVTEAV
+LGLAQEWEVDSLTFLDAAPLPVPHTRRLGVTTHGSRADAVEGLSTWSPEADIVAGLLQML
+ELRAEEADLPTAGYTVHVPHYVAEASFPQAAVAALEYAGAAMGLMLPSDDLRDASRDIEA
+ELERQVSGSGEIQQMIAGLERNYDQNAEDQERSLLETEQGLPDGDELASAVEAYLAARDA
+---GGGSAPAQEDGPGRPSTDDGD
+>TT9_LFPAFLNI_01279
+MQDAAPLYTRHEGAP---VPPGLGMLVALTGHMDAGRVARQVRAALHEHLTHRTVVSFDV
+DSMFDYRARRPRLRFDRDRYRDLRLPALEVQLVEDLLGHPFLLLSGPEPDFRWQAVTEAV
+LGLAQEWEVDSLTFLDAAPLPVPHTRRLGVTTHGSRADAVEGLSTWSPQADIVAGLLQML
+ELRAEEADLPTAGYTVHVPHYVAEASFPQAAVAALEYAGAAMGLMLPSDDLRDASRDIEA
+ELERQVSGSGEIQQMIAGLERNYDQNAEDQERSLLETEQGLPDGDELASAVEAYLAARDA
+---GGGSAPAQEDGPGRPSTGDGD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001059.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001059.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8cd69b675c0cc0af5d11f052fa45c306f81f9a16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001059.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01572
+--------------------MPANSEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGYGQSI
+EITLHPDGSVEVEDSGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGASVVNALSSRLDVQVLRGGK
+VHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKAKRGQTGTRVRYWADEQIFIKDAAFSADDLHARARQTAYL
+IPGLRITVKDLRRRPGTPGAEGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGSFKERVPVLGEDGRTAMQDVQRT
+CEVDLALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKAFRTQVESNARRLKAGSDKVEKDDVLAGMTAVLTVRLA
+EPQFEGQTKEILGTSAVRRIVAQVVEKELTARLTATARAQKQQVHVLLEKVVAEMKSRISARTHKENQRRKNALETSTMP
+AKLADCRSNDVASSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL
+DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVFAAVPPLHRIEAVTKGVKEREVIYTYSEQELYATLARL
+EKEGRSYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRRVNIAEVEAAERVFDLLMGSSVAPRKDFIVSHADELDRERID
+A
+>KBS0714_MOLHKGIG_01319
+MSGPRSRLDRPLSSTERPAPVPANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSI
+EITLHPDGSVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGASVVNALSSRLDVQVLRGGK
+VHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKAKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYL
+IPGLRITVKDLRRRPGTPGADGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT
+CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSDKVEKDDVLAGMTAVLTVRLA
+EPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQKQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMP
+AKLADCRSNDVASSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL
+DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVKEREVIYTYSEQELHATLARL
+EREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRVNIAEVEAAERVFDLLMGSAVAPRKDFIVSHADELDRARID
+A
+>KD337_NAFOICDF_01468
+--------------------MPANTEYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSI
+DVTLHPDGSVEVADNGRGIPVDVEPRTGLTGVEVVFTKLHAGGKFGGGSYAASGGLHGVGASVVNALSSRLDVQVVRGGK
+VHQLSFRRGEPGRFQDGSRPTPDAPFEPAADAAPLDVVGKAKRGQTGTRVRYWADEQIFTPDATFSMEDLQARARQTAYL
+IPGLRIAVTDLRRLTGTAGEAGPVQEVYQYDGGIAEFVDHLTPAKPVTDVWRIQGSGTFTERVPVLGEDGRTQMQDVQRT
+CEVDVALRWDVGYETVFRSFVNIIATPKGGTHQSGFESALLKVFRAQVEAGARRLKAGSDRPDKDDVLAGMTAVLTVRLA
+EPQFEGQTKEILGTPAVRRIVARVVEKELTALLTSTARGQKQQVGALLEKVVAEMKSRISARTHKENQRRKNALETSTMP
+AKLADCRSNDVAASELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILSNAECAALIQVVGGGAGRGFDL
+DAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGKKEREVIYTYSEAELHEVLARL
+EAEGRTYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRVTISEVEAAERVFELLMGSSVAPRKAFIVSNADELDRERID
+A
+>SA211_MHAAABBN_01040
+--------------------MPANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSI
+EITLHPDGSVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGASVVNALSSRLDVQVLRGGK
+VHQMSFRRGEPGRFQDGSRPSPAAPFEPSTDASPLDVVGKAKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYL
+IPGLRITVKDLRRRPGTPGADGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT
+CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSDKVEKDDVLAGMTAVLTVRLA
+EPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQKQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMP
+AKLADCRSNDVASSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL
+DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVKEREVIYTYSEQELHATLARL
+EREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRVNIAEVEAAERVFDLLMGSAVAPRKDFIVSHADELDRERID
+A
+>TT9_LFPAFLNI_01275
+--------------------MPANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSI
+EITLHPDGSVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGASVVNALSSRLDVQVLRGGK
+VHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKAKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYL
+IPGLRITVKDLRRRPGTPGADGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT
+CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKAFRAQVEANARRLKAGSDKVEKDDVLAGMTAVLTVRLA
+EPQFEGQTKEILGTSAVRRIVSQVVEKQLTARFTSTARAQKQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMP
+AKLADCRSNDVASSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL
+DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVKEREVIYTYSEQELHATLARL
+EREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRVNIAEVEAAERVFDLLMGSAVAPRKDFIVSHADELDRERID
+A
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001063.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001063.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4427d2b07b30904c1c121714e8a6ea18b089aa2d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001063.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01579
+MDPLDLARWQFGITTVYHFLMVPLTIGLGLVVAVMQTLWVRTGREQYLRMTKFWGKLFLINFIMGVATGIVQEFQFGMAW
+SEYSRFVGDVFGAPLALEALIAFFLESVFLGVWIFGWGRVPRRLHLAAIWCAVIGAHLSAYFILTANAFMQHPVGYEVVD
+GRPVLNDIGAVLANPIVLTHFPHTIAGSWAVAGGFLLGISWYHLWKRRRDGIDTVDEHGRVVVGTTDSKARDRLDHRVWI
+TSLRAGAAVAIVGFLGTAFTGHAQAQQMIEFQPTKMASAEAACHDGTAFSVLTLGDLGAGDRTTCTDVTTVIELPGLLSY
+LAYEDFTTPVPGLNSLLPDFEERYGTHLPDDPLYGERAGAPIDYQPLMEVTYWGFRLMITFGGLGALAGALTLWMTRRGT
+VPDSRGWTATAVASIGAPFAANVAGWVFTEMGRQPFVVYPNPAMGVDEVYMFTAAAVSPGVSAQEVLASLIVLVGIYAVL
+LVVEVVLMVRYVRGGVPAGMPELTADEHRDPDEDRHDRDDVLAFAY
+>KBS0714_MOLHKGIG_01313
+MDPLDLARWQFGITTVYHFLMVPLTIGLGLVVAVMQTLWVRTGREQYLRMTKFWGKLFLINFIMGVATGIVQEFQFGMAW
+SEYSRFVGDVFGAPLALEALIAFFLESVFLGVWIFGWGRVPRRLHLAAIWCAVIGAHLSAYFIMTANAFMQHPVGYEVVD
+GRPVLNDIGAVLANPIVLTHFPHTIAGSWAVAGGFLLGISWYHLWKRRRDGIDTVDEHGRVVVGTTGSKARDRLDHRVWI
+TSLRAGAAVAIVGFLGTAFTGHAQAQQMIEFQPTKMASAEAACHDGTAFSVLTLGDLGAGDRTTCTDVTTVIELPGLLSY
+LAYEDFTTPVPGLNSLLPDFEERYGTHLPDDPLYGERAGAPIDYQPLMEVTYWGFRLMITFGGLGALAGALTLWMTRRGT
+VPDSRGWTATAVASIGAPFAANVAGWVFTEMGRQPFVVYPNPAMGVDEVYMFTAAAVSPGVSAQEVLASLIVLVGIYAVL
+LVVEVVLMVRYVRGGVPAGMPELTADEHRDPDEDRHDRDDVLAFAY
+>KD337_NAFOICDF_01475
+MDPLELARWQFGITTVYHFLMVPLTIGLGLVVAVLQTLWVRTGREHYLRMTKFWGKLFLINFIMGVATGLVQEFQFGMAW
+SEYSRFVGDVFGAPLALEALIAFFLESVFLGMWIFGWDRLPRRLHLAAIWCAVIGAHLSAYFIMAANAFMQHPVGYEVVD
+GRPVLNDIVAVLTNPIVLTHFPHTIAGSWAVAGGFLLGISWYHLWKRRRDGIDTVDAEGRVVVGTTGSKARDALDHRVWI
+TSLRAGAAVVIVGFLGTAFTGHAQAQQMIHYQPTKMASAEAACHDGTAFSVLTLGDVNTPGATTCDDVTGVIEIPGLLSF
+LAYSDFTTPVPGITTLLPQFEARYGTQLPDDPMYGERAGQEISYLPLMEVTYWGFRLMITFGGLAALAGALTLWMTRKGT
+VPDSKPWMITAVASIGASFAANVAGWVFTEMGRQPFVVYPNPAMGVDEVYMFTAAAVSPGVSGEEVLTSLIVFVVLYAVL
+LVVEVALLARYVRGGVPAGMPELTADEHRDPDDDRHDRDDVLAFAY
+>SA211_MHAAABBN_01036
+MDPLELARWQFGITTVYHFLMVPLTIGLGLVVAVLQTLWVATGKDHYLRMTKFWGKLFLINFIMGVATGLVQEFQFGMAW
+SEYSRFVGDVFGAPLALEALIAFFLESVFLGIWIFGWDRIPRRLHLAALWCAVLGINLSAYFIMVANGFMQHPVGYEVVD
+GRPVLNDLGAVLTNPIVLTHYPHTIFGSWAVAGGFLVGIAWYHLWKRRRDGIDVVDEAGRVVVGDAGTAARDRTDHRVWL
+TSLRAGAAVALIGFVGTAFSGHAQAQQMIHFQPTKMAAAEAACHDGTAFSVLTLGDVRSGGATTCEDVQGVIEVPGLLSY
+LAYEDFTTPVRGINTLLPEFEQKYGTHLPDSELYGDRAGSEISYLPLMEVTYWGFRLMILFGGLGALAALGALWFSRRGT
+VPASRGWMRLAVASIGAPFAANMTGWVFTEMGRQPFVVYPNPAMGVDQVYMFTAAAVSPGVTGEEVLVSLIVLVGIYAVL
+LGVEVFLLTRFVRGGVPAAMPELTAAEHS--DEQKRDRDDVLAFAY
+>TT9_LFPAFLNI_01271
+MDPLELARWQFGITTVYHFLMVPLTIGLGLVVAVLQTLWVATGKDHYLRMTKFWGKLFLINFIMGVATGLVQEFQFGMAW
+SEYSRFVGDVFGAPLALEALIAFFLESVFLGIWIFGWDRIPRRLHLAALWCAVLGINLSAYFIMVANGFMQHPVGYEVVD
+GRPVLNDLGAVLTNPIVLTHYPHTIFGSWAVAGGFLVGIAWYHLWKRRRDGIDVVDEAGRVVVGDAGTAARDRTDHRVWL
+TSLRAGAAVALIGFVGTAFSGHAQAQQMIHFQPTKMAAAEAACHDGTAFSVLTLGDVRSGGATTCEDVQGVIEVPGLLSY
+LAYEDFTTPVRGINTLLPEFEQKYGTHLPDSELYGDRAGSEISYLPLMEVTYWGFRLMILFGGLGALAALGALWFSRRGT
+VPASRGWMRLAVASIGAPFAANMTGWVFTEMGRQPFVVYPNPAMGVDQVYMFTAAAVSPGVTGEEVLVSLIVLVGIYAVL
+LGVEVFLLTRFVRGGVPAAMPELTAAEHS--DEQKRDRDDVLAFAY
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001065.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001065.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d45edb54ce4af47b1989fbb9c59e7ed5158c2427
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001065.fa
@@ -0,0 +1,85 @@
+>AS2_ACLBLIBL_01581
+MTDDGAPRGPG-------REHDDGPRRRRGPDLSPAARRAVAAMLGLAALRAAGWILLAESLARLLTRMADTLDPEGTAQ
+LFEMLFLPPAPVGPVGAASSFAGALALGAAGVGLRALADAGQRVWGRRAALGVQVGVRRDLVAHRLASADGSRPRSGADA
+VLVTHGLQGLDDYYTEVLPALASAAVVPPVLGAWILTRDPLSALVVLLTVPLVPFFMVLIGRHTQERIDAAQDGLDRLSG
+HLVELARGLPVLVGLRRAGVQRRALERASQRYHAATLGTLRTAFVSGMALELIASLSVAVMAVFIGLRLVYGQMDLGAGL
+VVLVLAAEVYLPLRDVGSAYHASEDGREAEGRARAAARAPVPEAARDALADPTAAPARAAD-------------PAAAPR
+RAVVLEDVGVAFGDRRVLQGVDLRAAPGTLTVLGSASGTGKSTLLHLLAGLLRTTDARVQGSVSGVDPERTVWVGQHPRL
+LEPTVGEELDAAAGRALADSERAAVLAAVALDGAAHRRPVELSPGELRRVALARALARLST--AGADRRPWLVLLDEPTA
+HLDDAAAAAVRAGVVALARAGVPGLALPPCIVVAASHDPALQRAADALVDAQGTPLAPGAADGA-ADPEAAAPAGPEPAS
+PAAVASPVEAEPVPASATSTAPSPAAARRARTRAALRILPWRSGRLWAGVAWATGTHLSAALLAGLSGWLIVTAAGRPPV
+LYLLSVIVLVRAFGLSRAVFRYLDRLATHDAVLGWASRLRLRLWDALGRRPALWGRLSRADGALSVLVADVDALRDAAPR
+VMVPVPAAVLAWLVSAGAVALLAPELAAAALVPGALGLVAIPVVVAALDRRQTQAAVRHRAGLLDRVAAVLAAAPDLHGL
+GRARAAADRLAEADAALQAPQRRAAWAAGAGRALAVLVSGGTALAVALTATQTGTAAAVAAFAVLLVLSWAEPYGALAQS
+AQELGTLASQARAAADLLGEDEPGTAVPDAADPGRASATPDPTSAPMSADPEPAAPVRVTGLALRGAAVRFEGADAPLWS
+GVDLRVEPGQTAVVTGPSGAGKSTLLAVLLGFQPLAEGAYLLRTEADGRRVE-APADAAALARVAWTPQDALLFDSSLRG
+NLALARDPEDAPDDAELTAVLERVGLGPWLAAAPEGLDTPVGAGGRVLSGGQRQRLAVARALVARADVVLLDEPTAHVGQ
+DEALALMADLRAALAGRIAVVVTHDERLAAEADVRLRLGVSPPRPSRGRPRPAAR
+>KBS0714_MOLHKGIG_01311
+MTDDGAPRGPG-------RGHDDGPRRRRGPDLSPAARRAVAAMLGLAALRAAGWILLAESLARLLTRMAGTLDPEGTAQ
+LFEMLFLPPAPVGPVGAASSFAGALALGAAGVGLRALADAGQRVWGRRAALGVQVGVRRDLVAHRLASADGSRPRSGADA
+VLVTHGLQGLDDYYTEVLPALASAAVVPPVLGAWILTRDPLSALVVLLTVPLVPFFMVLIGRHTQERIDAAQDGLDRLSG
+HLVELARGLPVLVGLRRAGVQRRALERASQRYHAATLGTLRTAFVSGMALELIASLSVAVMAVFIGLRLVYGQMDLGAGL
+VVLVLAAEVYLPLRDVGSAYHASEDGREAEGRARAAARAPVPEAARDALADPTAAPARAAG-------------PAAAPP
+GAVHLEDVGVAFGDRRVLQGVDLRAAPGTLTVLGSASGTGKSTLLHLLAGLLRTTDARVQGSVSGVDPDRTVWVGQHPRL
+LEPTVGEELDAAAGRALADSERAAVLAAVALDGAAHRRPVELSPGELRRVALARALARLST--AGADRRPWLVLLDEPTA
+HLDDAAAAAVRAGVVALARAGVPGLALPPCIVVAASHDPALQRAADALVDAQGTPLAPGAADGP-ADPEAAAPAGPEPAS
+PAAVASPVEAEPVPASATSTAPSPAAARRARTRAALRILPWRSGRLWAGVAWATGTHLSAALLAGLSGWLIVTAAGRPPV
+LYLLSVIVLVRAFGLSRAVFRYLDRLATHDAVLGWASRLRLRLWDALGRRPALWGRLSRADGALSVLVADVDALRDAAPR
+VMVPVPAAVLAWLVSAGAVALLAPELAAAALVPGALGLVAIPVVVAALDRRQTQAAVRHRAGLLDRVAAVLAAAPDLHGL
+GRARAAADRLAEADAALQAPQRRAAWAAGAGRALAVLVSGGTALAVALTATQTGTAAAVAAFAVLLVLSWAEPYGALAQS
+AQELGTLASQARAAADLMGEDEPGTAVPDAADPGRASATPDPTSAPMSADPEPAAPVRVTGLALRGAAVRFEGADAPLWS
+GVDLCVEPGQTAVVTGPSGAGKSTLLAVLLGFQPLAEGAYLLRTEADGRRVE-APADAAALARVAWTPQDALLFDSSLRG
+NLALARDPEDAPDDAELTAVLGRVGLGPWLAAAPEGLDTPVGAGGRVLSGGQRQRLAVARALVARADVVLLDEPTAHVGQ
+DEALALMADLRAALAGRIAVVVTHDERLAAEADVRLRLGVSPPRPSRGRPRPAAR
+>KD337_NAFOICDF_01477
+MTD----RPPR-------RRGRVRAGRGPGPGLDRRARRAVGVMALLAGVRALGWILLAESLARLLTSLAMTLDPEASAQ
+LFQLLFMPPAPVGPVGPVADVAGVVVLGAAGVVLRALADQGQHVAGRRAALGAQVGIRRELVAHRLAATDGTRPRSGADA
+VLVTHGLAGLDDYYTEVLPALASAAVVPPMLGVWILTRDGVSAAVVLLTVPLIPFFMVLIGRHTQERIAAAQDGLDRISG
+QLLELARGLPVLVGLRRAGVQRRALEKASERYHAATLGTLRTAFVSGLALELIASLSVAIMAVFIGVRLVYGQMDLYSGL
+VVLVLAAEVYLPLREVGSAYHSSEDGRAAAERAAAAVAEPVPTPALASLAWPGPETGQDHGTDGGMDDGMDDRTPAA---
+GTVLLRDVSVSRGPRPVVRGADLTLRPGGLTVLGSASGAGKSTLLHLLAGVLRTPDVAVSGTVAGVDSDRTLWVGQHPRF
+LEATVDAELDAAAGGALAAPVRREVLRAAALADFGARAPHELSPGEQRRVALARAMSRLAADRTAVETRPWLVLLDEPTA
+HLDDASAAVVRATVGALARGAVPGLPTPPAAVLAASHDPVLQRAADALVDVEGRPLAPGADAAPYADPDAAGP-------
+PLAAGAPDDAG--PGDAPDAPRGEGSEGRPSLRAVLAVLPWGAPRLWAGVGWATLTHLAAALLAGLSGWLIVTAAGRPPI
+LYLLSVIVLVRGFGLFRAVFRYADRLATHDAVLRWASELRLRLWDAMGRRPALWSRLSRADGALSVLLSDVDALRDAAPR
+VLVPVPAAVLAWAVTALLIGGLAPELAVTALVPGAVGLLVIPVVVAALDRRDTLLTARRRAALLDRVSAVLGAAPDLHGL
+GRTREAAAALTAWDEDLQRPQRRAAWVAGLGRALAVLASGGAALAAALTATQTGTSTPVAAFVVFLALSWAEPLGALAQA
+AQQTGTLVDQARQAAGLLG-------VEDEAASGATSAAPDEAAASAAGSSAPAG--RITGVRLEDAAYAYPGSTRVLWS
+GLDVALESGQTAAVTGPSGAGKSTLLAVLLGFLTPTAGRHLLTVERDGVSRE-APADPAALARVAWTPQDALVFDSTVRG
+NLALARDADDAPTDAELADTLRLVGLGRWLDAAPDGLDTPVGPGGDRLSGGERQRLAVARALVARADVVLLDEPTAHVGQ
+DEALALMADLRRALAGRIAVVATHDPRVAAAADVRVRLGGD----AAGHP-----
+>SA211_MHAAABBN_01034
+--------------------------------MTPAALRALPALLALAVLRALGWILLAESLARLITGLAMTLDPEDSAR
+LLDLLFHPPAPVGPVPAAQTLSGPVLLGAAGVALRALAEAGQRVVGRRAALGAQQQVRAAVVAQRLAAADGGRPRSGADA
+VVVTHGLKSLDDHYTEALPALAATAVVPAALGVWILTHDLVSAVVAAITLPLVPLFMILVGRHTQERIDAAQDGLDRLAG
+HLLELARGLPVLVGLHRAGVQRRALQEVSQRHHAATMVTLRTAFLSGLALELIASLSVAVMAVFIGLRLVNGQMALLDGL
+VVLILAAELYLPLREVGAAFHASEDGREAESRARAAADAPVPAPVLDTLG---PASGPDRD-------------------
+GGVLVQDLSVRMAGRQVLEGLDLTAPPGHLTALAGPSGTGKSTVLRLLAGLLRQDAAEATGRVAGVDTERTLWIGQHPVL
+TERTVAGELDLAAGGALPGPVRSAVLAAVALEGLQERDPADLSPGECRRVAVARLLARLHA---ADGTGPWLVLLDEPTA
+HLDGAVAAVVVETLAALPSGAVPGLSTPQCTVLAASHDPTLLTAADAIVR-----LAPGA--------------GPTAGS
+PAT------AMPVAAAQGRARPEPVTPRQVSLRAGLRLLPWRQPKLWAGIGWAAGTHVSAALLAALSGWLIVTASTRPPV
+LYLLAVIVLVRGFGLSRAVFRYLDRLTTHDAVFGWATELRLRLWDALGRQPRLWGRVGRTDGALSLLVSDVDAFRDAVPR
+VLVPAPAALLAWLATAALTWALAPELAVVALVPGAVALVVIPALVAVLDRRQTAAQVRGQGALVDRVAAVLNAAGDLRGL
+GLTEPALRGLAVLDDRLQRPRRRAAWAAGGGRALAVAASGGIAVAAAAAAAHTGTSAPVAALVVLLALSWAEPYGALAAA
+AQHWGTLADRARATGELLGPEEGGA----------AAAPPEPAEA-----AEPEA--RVCRLRLVEAAFAHPGA-PPLWT
+DLELDLAPGDVAVVTGPSGSGKSTLLAVLLGFLPLTAGRYTLETVPPTPQPDPVRPDATALARVAWTPQDALIFDSTARG
+NLALARGVADAPSDAELTAALELVGLGPWLAAAPQGLDTRVGPGGQRLSGGQRQRLAVARALVARADVVLLDEPTAHVDA
+DEARALITDLRRALADRIVVIVTHDGRLLEDGDVPVRVGC---------------
+>TT9_LFPAFLNI_01269
+MSP-SRPAAPAVERSASAAGPHPGRTRRARPPMTPAARRALPALLALAVLRALGWILLAESLARLITGLAMTLDPEDSAR
+LLELLFHPPAPVGPVPAAQTLSGPVLLGAAGVALRALAEAGQRVVGRRAALGAQQQVRAAVVAQRLAAADGGRPRSGADA
+VLVTHGLKSLDDHYTEALPALAATAVVPAALGVWILTHDLVSAVVAAITLPLVPLFMILVGRHTQERIDAAQDGLDRLAG
+HLLELARGLPVLVGLHRAGVQRRALQEVSQRHHAATMVTLRTAFLSGLALELIASLSVAVMAVFIGLRLVNGQMTLLDGL
+VVLILAAEVYLPLREVGAAYHASEDGREAESRARAAADAPVPAPVLETLA---PASGPDRD-------------------
+GGVVIRDLSVRLAGRQVLGGLDLSALPGRLTALAGPSGTGKSTVLRLLAGLLRQDAAEATGRVAGVDTERTLWIGQHPVL
+TERTVAGELDLAAGGALPGPVRSAVLAAVALEGLQERDPADLSPGECRRVAVARLLARLHA---ADGTGPWLVLLDEPTA
+HLDGAVAAVVVETLAALPSGAVPGLSTPQCTVLAASHDPTLLTAADAIVR-----LAPGA--------------GPTAGS
+PAT------AMPVAAAQGRARPEPVTPRQVSLRAGLRLLPWRQPKLWAGIGWAAGTHVSAALLAALSGWLIVTASTRPPV
+LYLLAVIVLVRGFGLSRAVFRYLDRLTTHDAVFGWATELRLRLWDALGRQPRLWGRVGRTDGALSLLVSDVDAFRDAVPR
+VLVPAPAALLAWLATAALTWALAPELAVVALVPGAVALVVIPALVAVLDRRQTAAQVRGQGALVDRVAAVLNAAGDLRGL
+GLTEPALRGLAVLDDRLQRPRRRAAWAAGGGRALAVAASGGIAVAAAAAAAHTGTSAPVAALVVLLALSWAEPYGALAAA
+AQHWGTLADRARATGELLGPEEGGA----------AAAPPEPAEA-----AEPEA--RVCRLRLVEAAFAHPGA-PPLWT
+DLELDLAPGDVAVVTGPSGSGKSTLLAVLLGFLPLTAGRYTLETVPPTPQPDPVRPDATALARVAWTPQDALIFDSTARG
+NLALARGVADAPSDAELTAALELVGLGPWLAAAPQGLDTRVGPGGQGLSGGQRQRLAVARALVARADVVLLDEPTAHVDA
+DEARALITDLRRALADRIVVIVTHDGRLLEDGDVPVRVGC---------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001068.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001068.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ab1daab54749aa20a1e3eb576f5d5222ea023eff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001068.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01584
+MEPMSPFR-RSHESGRPEHRPGAPASGEHRHEARTLEGAGGLGASLARAGFYPELVAHAI
+AVELGERTPDAHLVHVDTHFDYEEIHRHITVLVLAQDALLAVHLDDHAADAAGQAVLAQV
+STEMVPVRALGSVVLTTGHADPARFSPADPVAEMTLALIWAGGQRLDLQPAGCADPQCDL
+DHGYTGTATREDLVIRVAADADGQGAVDGALAFARALRRAHLAATA
+>KBS0714_MOLHKGIG_01308
+MGDMSPFR-RSHEPGRPDHRSGTPEAEGRQREARTLDGSGGLDASLVRAGFYPDLVAHAI
+AVELEGRTPDAHLVHVDTHFDYEEIHRHITALVLAGDTLLAVHLDDHAADPAGQAVLAQV
+STEMVPVRALGSVVLTTGHADPARFRPSDPVAEMTLGLMWAGGQRLDLQPAGCADPQCDL
+DHGYTGTATREDLVIRVAADADGQGAVDGALAFARALRRAHLAATT
+>KD337_NAFOICDF_01480
+MEGMTPLRWNNHDDSASDGRRP---AGEVRRTRQTVDATGTLEQALARAGYYPELVSHAV
+ALELEGRTVHAHLVHVDTHFDYEEIHRHITVLVVADDVMLAVHLDDHAADPAGHSVLAQV
+ATEMVPLRAIESVLITTGHATPERYRPTDPVAEVTLGVQWAGGQRLDLQPAGCADPQCDA
+DHGYTGTSVREDLVIRVAADAEGQGAVDAALAFARTLRRVHLAAVA
+>SA211_MHAAABBN_01031
+MGDMSPFR-RSHEPGRPDHRPDAPEAEGRQREARTLDGSGGLDASLVRAGFYPDLVAHAI
+AVELEGRTPDAHLVHVDTHFDYEEIHRHITALVLAGDTLLAVHLDDHAADPAGQAVLAQV
+STEMVPVRALGSVVLTTGHADPARFRPSDPVAEMTLGLMWAGGQRLDLQPAGCADPQCDL
+DHGYTGTATREDLVIRVAADADGQGAVDGALAFARALRRAHLAATT
+>TT9_LFPAFLNI_01266
+MGDMSPFR-RSHEPGRPDHRPDAPEAEGRQREARTLDGSGGLDASLVRAGFYPDLVAHAI
+AVELEGRTPDAHLVHVDTHFDYEEIHRHITALVLAGDTLLAVHLDDHAADPAGQAVLAQV
+STEMVPVRALGSVVLTTGHADPARFRPSDPVAEMTLGLMWAGGQRLDLQPAGCADPQCDL
+DHGYTGTATREDLVIRVAADADGQGAVDGALAFARALRRAHLAATT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001070.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001070.fa
new file mode 100644
index 0000000000000000000000000000000000000000..43508da010b34006588a4163b3057accced215bf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001070.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01587
+MATDYDAPRKNEEELSQNSIEELKARRTDTQSAVVDEDETEAAEGFELPGADLSGEELMV
+RVLPAQSDEFTCASCFLVRHRSQAAREKNGMTYCTDCEG
+>KBS0714_MOLHKGIG_01305
+MATDYDAPRKNEEELSQNSIEELKARRTDTQSAVVDEDEAEAAEGFELPGADLSGEELMV
+RVLPAQSDEFTCASCFLVRHRSQAAREKNGLIYCTDCEG
+>KD337_NAFOICDF_01483
+MATDYDAPRKNEEELSQNSIEELKARRTDTQSAVVDEDETEAAEGFELPGADLSGEELMV
+RVLPAQSDEFTCASCFLVRHRSQAAREEGGLVYCTDCEG
+>SA211_MHAAABBN_01028
+MATDYDAPRKNEEELSQNSIEELKARRTDTQSAVVDEDEAEAAEGFELPGADLSGEELMV
+RVLPAQSDEFTCASCFLVRHRSQAAREKNGLIYCTDCEG
+>TT9_LFPAFLNI_01263
+MATDYDAPRKNEEELSQNSIEELKARRTDTQSAVVDEDEAEAAEGFELPGADLSGEELMV
+RVLPAQSDEFTCASCFLVRHRSQAAREKNGLIYCTDCEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001071.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001071.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7c6aa56d8b11b958aa1dff7a006bfdf488d0424d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001071.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01588
+MREPQQHPVSDAPVDRPQDPAQGSDRVLFEERLTPSAGVWVVALMLASLTILVFAPIDLW
+FGVAAAVVFFGLEALLLLTTTPRIVVRERTLQVGRASIERRHVGEVTGHRGEDARRQRGP
+LLHGLAYVVVRGWISPVVRIQLTDERDRTPYWLTSTRRPEELVAALGGTMVQEDPADEDR
+>KBS0714_MOLHKGIG_01304
+MRDPQQHPVADASRRAPGGAAAGPDPVLFEERLTPSPGVWAVALMLAALTILVFAPIDLG
+VGIAAAVAFFAVEVLILVATTPRIVVRERTLQVGRASIERHHVGQVTGYRGEDARAQRGP
+LLHGLAFVNVRGWIAPVVRIQLTDERDRTPYWLTSTRRPEELVAALGGTMARQEGTAEGR
+>KD337_NAFOICDF_01484
+MQDASATP----DHHAPRTVAASADPVQYEERLSPSVGVWLVALLLAGLCIFVLAPVALW
+AGFLAAAVFFVVEAVVLLASTPRIVVRERTLQVGRAQIERRHLGAVTGHRGEAARAQRGP
+LLHGLAYVCVRGWISPVVRIQIEDERDATPYWLASTRHPEDLVAALGGRMAGEG------
+>SA211_MHAAABBN_01027
+MRDPQQHPVADASRRAPGGAAAGPDPVLFEERLTPSPGVWAVALMLAALTILVFAPIDLG
+VGIAAAVAFFAVEVLILVATTPRIVVRERTLQVGRASIERHHVGQVTGYRGEDARAQRGP
+LLHGLAFVNVRGWIAPVVRIQLTDERDRTPYWLTSTRRPEELVAALGGTMARQEGTAEGR
+>TT9_LFPAFLNI_01262
+MRDPQQHPVADASRRAPGGAAAGPDPVLFEERLTPSPGVWAVALMLAALTILVFAPIDLG
+VGIAAAVAFFAVEVLILVATTPRIVVRERTLQVGRASIERHHVGQVTGYRGEDARAQRGP
+LLHGLAFVNVRGWIAPVVRIQLTDERDRTPYWLTSTRRPEELVAALGGTMARQEGTAEGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001080.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001080.fa
new file mode 100644
index 0000000000000000000000000000000000000000..13d577b4b0a60801bd80b3ae6dbe08fa935921c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001080.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_01597
+MTTVDSFGSKGVLDVKGAEYEIFRLNKVEGAEKLPYSLKVLLENLLRTEDGANVTAEQIKALASWNPDAQPDTEIQFTPA
+RVIMQDFTGVPCVVDLATMREAIQDLGGDPERVNPLSPAELVIDHSVQIDSFGNDAAIERNMEIEYERNGERYKFLRWGQ
+TAFDDFKVVPPGMGIVHQVNIENLARTVMTREVDGVLRAYPDSCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM
+LIPRVVGFKLTGSIPAGATATDVVLTITEMLRQHGVVGKFVEFYGEGVGSVPLANRATIGNMSPEFGSTAAMFPIDEVTL
+DYLRLTGRTAEQVDLVEAYTKEQGMWHDPSSEVKYSEYLELDLSTVVPSISGPKRPQDRIELSDSKDQFRKDLHNYATQD
+EAGEGRPSKLVDVSMEDGRQFQLDHGAVSIASITSCTNTSNPSVMMAAGVLARNAVAKGLKSKPWVKTSVAPGSRVVTDY
+YEKSGLRESLNDLGFNVVGYGCTTCIGNSGPLESEISEAIQENDLSVTAVLSGNRNFEGRINPDVKMNYLASPPLVVAYA
+LAGTMDFDFENEALGQDSEGNDVFLKDIWPDPTEVQKIIDESIDTEMFTSQYGTIFDGDERWQSLETPSGSTFEWDEQST
+YVRKPPYFEGMTMQPDAVSDISGARVLLKLGDSVTTDHISPAGSFKSDTPAGKYLLENGVERKDFNSYGSRRGNHEVMIR
+GTFANIRIKNQLLDGVEGGFTRDFTQDGAPQAYVYDAAQNYAAAGTPLVVLGGKEYGSGSSRDWAAKGTALLGVKAVITE
+SFERIHRSNLIGMGVLPLQFPEGENADSLGLTGTETFDISGITALNEGTTPKTVKVTATGGDGKVTEFDAVVRIDTPGEA
+EYYRNGGILQYVLRQIASKA
+>KBS0714_MOLHKGIG_01295
+MTTVDSFGSKGVLDVKGAEYEIFRLNKVEGAQKLPYSLKVLLENLLRTEDGANVTADQIKALAAWDPNAQPDTEIQFTPA
+RVIMQDFTGVPCVVDLATMREAIQDLGGDPERVNPLSPAELVIDHSVQIDSFGNDAAIERNMEIEYERNGERYKFLRWGQ
+TAFDDFKVVPPGMGIVHQVNIENLARTVMTREVDGVLRAYPDSCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM
+LIPRVVGFKLTGSIPSGATATDVVLTITEMLRQHGVVGKFVEFYGEGVGSVPLANRATIGNMSPEFGSTAAIFPIDEVTL
+DYLRLTGRSEEQVALVEAYTKEQGMWHDPSSEVAYSEYLELDLSTVVPSISGPKRPQDRIELTDSKDQFRKDLHNYATQD
+EAGEGRPSKLVDVAMPDGRQFQLDHGAVSIASITSCTNTSNPSVMMAAGVLARNAVAKGLKSKPWVKTSVAPGSRVVTDY
+YEKSGLRESLNDLGFNVVGYGCTTCIGNSGPLESEISEAIQENDLSVTAVLSGNRNFEGRINPDVKMNYLASPPLVVAYA
+LAGTMDFDFENEALGQDTEGNDVFLKDIWPDPTEVQQIIDASIDTEMFTSQYATIFDGDERWQSLETPSGSTFEWDEKST
+YVRKPPYFEGMTMQPDPVSDISGARVLLKLGDSVTTDHISPAGSFKSDTPAGRYLLENGVQRKDFNSYGSRRGNHEVMIR
+GTFANIRIKNQLLDGVEGGFTRDFTQEGAPQAYVYDAAQNYAEQGTPLVVLGGKEYGSGSSRDWAAKGTALLGVKAVITE
+SFERIHRSNLIGMGVLPLQFPEGENADSLGLTGTETFDISGITALNEGTTPKTVKVTATGEDGKVTEFDAVVRIDTPGEA
+EYYRNGGILQYVLRQIASKA
+>KD337_NAFOICDF_01493
+MTTVDSFGSKGVLDVNGSEYEIFRLNAVEGAQKLPYALKVLLENLLRTEDGANVTAEQIKALASWDPTAEPDTEIQFTPA
+RVIMQDFTGVPCIVDLATMREAIADLGGDPSRVNPLSPAELVIDHSVQIDSFGNDAAVERNMDIEYQRNGERYKFLRWGQ
+TAFDDFKVVPPGMGIVHQVNIENLARAVMVRDVDGVKRAYPDSCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM
+LIPRVVGFKLTGQIPAGATATDVVLTITEQLREHGVVGKFVEFYGEGVGAVPLANRATIGNMSPEFGSTAAMFPIDDVTL
+DYLRLTGRSEEQVALVEAYTKEQGLWHDPSAEVQYSEYLELDLSTVVPSISGPKRPQDRIVLSDSKDQFRKDLHNYATQD
+EAGEGRPSKLVDVHMEDGREFQLDHGAVSIASITSCTNTSNPSVMMAAGVLARNAVAKGLTAKPWVKTSVAPGSRVVTDY
+YEKSGLNASLDALGFNVVGYGCTTCIGNSGPLESEISEAIQENDLSVTAVLSGNRNFEGRINPDVKMNYLASPPLVVAYA
+LAGTMDCDFENEALGTDQDGNDVFLKDIWPDPAEVQRIIDESIDTEMFTSQYGTIFDGDERWQSLETPTGKTFEWDEAST
+YVRKPPYFEGMPAQPEPVQDIAGARVLLKLGDSVTTDHISPAGSFKSDTPAGQYLLANGVERKDFNSYGSRRGNHEVMIR
+GTFANIRIKNQLLDGVEGGFTRDFTQDGAPQAYVYDAAQNYAAAGTPLVVLGGKEYGTGSSRDWAAKGTALLGVKAVITE
+SFERIHRSNLIGMGVLPLQFPAGESADSLGLTGTETFAISGIAELNEGRTPKTVKVTATAEDGKVTEFDAVVRIDTPGEA
+DYYRNGGILQYVLRQIAAKA
+>SA211_MHAAABBN_01018
+MTTVDSFGSKGVLDVKGAEYEIFRLNKVEGAQKLPYSLKVLLENLLRTEDGANVTADQIKALAAWDPNAQPDTEIQFTPA
+RVIMQDFTGVPCVVDLATMREAIQDLGGDPERVNPLSPAELVIDHSVQIDSFGNDAAIERNMEIEYERNGERYKFLRWGQ
+TAFDDFKVVPPGMGIVHQVNIENLARTVMTREVDGVLRAYPDSCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM
+LIPRVVGFKLTGSIPSGATATDVVLTITEMLRQHGVVGKFVEFYGEGVGSVPLANRATIGNMSPEFGSTAAIFPIDEVTL
+DYLRLTGRSEEQVALVEAYTKEQGMWHDPSSEVAYSEYLELDLSTVVPSISGPKRPQDRIELTDSKDQFRKDLHNYATQD
+EAGEGRPSKLVDVAMPDGRQFQLDHGAVSIASITSCTNTSNPSVMMAAGVLARNAVAKGLKSKPWVKTSVAPGSRVVTDY
+YEKSGLRESLNDLGFNVVGYGCTTCIGNSGPLESEISEAIQENDLSVTAVLSGNRNFEGRINPDVKMNYLASPPLVVAYA
+LAGTMDFDFENEALGQDTEGNDVFLKDIWPDPTEVQQIIDASIDTEMFTSQYATIFDGDERWQSLETPSGSTFEWDEKST
+YVRKPPYFEGMTMQPDPVSDISGARVLLKLGDSVTTDHISPAGSFKSDTPAGRYLLENGVQRKDFNSYGSRRGNHEVMIR
+GTFANIRIKNQLLDGVEGGFTRDFTQEGAPQAYVYDAAQNYAEQGTPLVVLGGKEYGSGSSRDWAAKGTALLGVKAVITE
+SFERIHRSNLIGMGVLPLQFPEGENADSLGLTGTETFDISGITALNEGTTPKTVKVTATGEDGKVTEFDAVVRIDTPGEA
+EYYRNGGILQYVLRQIASKA
+>TT9_LFPAFLNI_01253
+MTTVDSFGSKGVLDVKGAEYEIFRLNKVEGAQKLPYSLKVLLENLLRTEDGANVTADQIKALAAWDPNAQPDTEIQFTPA
+RVIMQDFTGVPCVVDLATMREAIQDLGGDPERVNPLSPAELVIDHSVQIDSFGNDAAIERNMEIEYERNGERYKFLRWGQ
+TAFDDFKVVPPGMGIVHQVNIENLARTVMTREVDGVLRAYPDSCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM
+LIPRVVGFKLTGSIPSGATATDVVLTITEMLRQHGVVGKFVEFYGEGVGSVPLANRATIGNMSPEFGSTAAIFPIDEVTL
+DYLRLTGRSEEQVALVEAYTKEQGMWHDPSSEVAYSEYLELDLSTVVPSISGPKRPQDRIELTDSKDQFRKDLHNYATQD
+EAGEGRPSKLVDVAMADGRQFQLDHGAVSIASITSCTNTSNPSVMMAAGVLARNAVAKGLKSKPWVKTSVAPGSRVVTDY
+YEKSGLRESLNDLGFNVVGYGCTTCIGNSGPLESEISEAIQENDLSVTAVLSGNRNFEGRINPDVKMNYLASPPLVVAYA
+LAGTMDFDFENEALGQDTEGNDVFLKDIWPDPTEVQQIIDASIDTEMFTSQYATIFDGDERWQSLETPSGSTFEWDEKST
+YVRKPPYFEGMTMQPDPVSDISGARVLLKLGDSVTTDHISPAGSFKSDTPAGRYLLENGVQRKDFNSYGSRRGNHEVMIR
+GTFANIRIKNQLLDGVEGGFTRDFTQEGAPQAYVYDAAQNYAEQGTPLVVLGGKEYGSGSSRDWAAKGTALLGVKAVITE
+SFERIHRSNLIGMGVLPLQFPEGENADSLGLTGTETFDISGITALNEGTTPKTVKVTATGEDGKVTEFDAVVRIDTPGEA
+EYYRNGGILQYVLRQIASKA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001082.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001082.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c039fbadf9eccf5efde44d566beb2251b0194c38
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001082.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01599
+MSIVRLYRETTNEDGSRLFEYREAWADVEGGEFVVHHGRVGHPGTVGEQPLADEAEGEEL
+LAAFLAQGAEEGFAEADPAGFALLPVAFRLRGREASDIERRNVEHLRVEVTHQLAWRGLG
+EVEDVTEEPGALVLAVRTPHARKAAAEIPVAARRADGVQPNKVEVRSAVQ----------
+---ED
+>KBS0714_MOLHKGIG_01286
+MSIVRLYRESVGDDGARLFEYREAWADAEAGEFVVHHGRVGQPGTVGEQPLADQAEGDQL
+LAAFVAQGAEEGFAEADPATFAVLPVAYRLRGREATAIERRTVERLRVEMTHQLAWRGLG
+EVEDVVEEVGALVLRVRTPHARKAAAEIPAAAKRADGVQPNKVDVRTAEQ----------
+---EG
+>KD337_NAFOICDF_01495
+MSISRLYRDRTEEDGRRSFEYREAWIDPSGELFTVHHGRVGHPGTVGDQPLTSEAEGAEL
+MDAFLAQGEADGFAPADEDAFDVLEVAYRLRGRAITEIERRHGRTLREEVTHQLAWRGLG
+EVTDVVDGDGELVLVVRTPHAPKAAAEVPAAAKRAHGIQPNKVEVRRVDAPRTPAGAAPD
+ADGEG
+>SA211_MHAAABBN_01005
+MSIVRLYRETVGDDGTRLFEYREAWADAEAGEFVVHHGRVGQPGTVGEQPLADQVEGDQL
+LAAFVAQGAEEGFAEADPATFAVLPVAYRLRGREATVIERRTVERLRVEVTHQLAWRGLG
+EVEDVVEEAGALVLRVRTPHARKAAAEIPAAAKRADGVQPNKVDVRTAEQ----------
+---EG
+>TT9_LFPAFLNI_01244
+MSIVRLYRETVGDDGTRLFEYREAWADAEAGEFVVHHGRVGQPGTVGEQPLADQVEGDQL
+LAAFVAQGAEEGFAEADPATFAVLPVAYRLRGREATVIERRTVERLRVEVTHQLAWRGLG
+EVEDVVEEAGALVLRVRTPHARKAAAEIPAAAKRADGVQPNKVDVRTAEQ----------
+---EG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001089.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001089.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fefc109053476c0463c03029a53a0e4cb2dbad3c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001089.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01607
+MTVIGPRRLAPVTGPRGAVAPAPAPLPAAFRRALADLRTARPRPEVRLREIAAPAGQAPH
+AVALAAEVCGSPGAD-DVLATGRFVLLHDPSPAARWPGGFRAVTWIRASLEPDVALDQLA
+GAVAWTWLVEALERRHAEHTQAGGTATRSIAEGFGTLGTAPDATDIELRASWTPAPRDLG
+AHLEAWSDMIGAFAGLPPR-------------
+>KBS0714_MOLHKGIG_01279
+MSVIGPRRLS--AAPGAVEAPVP---PGVFRRALADLRDARPRTEVRLREIPAPEGQAPF
+AVALAADVCDGPGATGGVLATGRFVLLHDPAPDARWPGGFRAVTWIRASLEPDVALDQLA
+GAVAWTWLVEALERHHAEHSHAGGTATRSIAEGFGTLSAAPDTTDIELRASWTPAPRDLG
+SHLEAWSDMICAFAGLPPEHAADVHTAGP---
+>KD337_NAFOICDF_01502
+MTESGPRAPA--PAAGGA--------SGAFADALADLRAAHPRPEVRLRPIPDPPGLAPF
+AVTLAADVLDPHGAEADPLATGRFVLLHDPAGSPVWRGDFRVVTYIRASLEPDVATDHLA
+GAVAWDWLAEALERRHAAHTEAGGTATRQLAEHFGTLALEPGWTDIELRASWTPGPRDLG
+AHLEAWSDMICAFAGLPPLADDDVPAAVPLRP
+>SA211_MHAAABBN_00998
+MSVIGPRRLS--AAPGAVEAPVP---PGVFRRALADLRDARPRTEVRLREIPAPEGQAPF
+AVALAADVCDGPGATGGVLATGRFVLLHDPAPDARWPGGFRAVTWIRASLEPDVALDQLA
+GAVAWTWLVEALERRHAEHSHAGGTATRSIAEGFGTLSAAPDTTDIELRASWTPAPRDLG
+SHLEAWSDMICAFAGLPPEHAADVHTAGP---
+>TT9_LFPAFLNI_01237
+MSVIGPRRLS--AAPGAVEAPVP---PGVFRRALADLRDARPRTEVRLREIPAPEGQAPF
+AVALAADVCDGPGATGGVLATGRFVLLHDPAPDARWPGGFRAVTWIRASLEPDVALDQLA
+GAVAWTWLVEALERRHAEHSHAGGTATRSIAEGFGTLSAAPDTTDIELRASWTPAPRDLG
+SHLEAWSDMICAFAGLPPEHAADVHTAGP---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001091.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001091.fa
new file mode 100644
index 0000000000000000000000000000000000000000..20085048171db5c025f42bf654e1dfcecd29663a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001091.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_01610
+---------------------------------------------------MRTGVKAAS
+PLARWTPPVLSVLASSAFVLAGASSALAGVFARTVVTPVRRHTETTAVLAVVDTPTGPEV
+ILKADEYTTVPGVYSLTFDGGAGCARIGRISSFDPRDGTVQRVVEEVYFGDLAAATRGRL
+TGFVYPTPADAGLDAEEVLVPVPGGHAPAWLVGPDPDDDGAARPAAGIWAIMVHGRGARR
+NEGIRTVPTAQRLGMTSLLISYRNDGDAPDAADSRYGLGTTEWEDVEAAIRYALDNGASD
+VVLFGWSMGGAVVLQAVDRSDLAPQVRGVVLTGPVVDWVDVLQHQARLNRIPEAVGVLGQ
+WLLSNRAGRFITGLAAPVDLKSLDWVTRAEHVRVPTLIIHSEDDEYVPVGPSQDLAERNP
+GLVRFVRFHQARHTREQNVDPKRWDTTVRGWLRAVLNADRPGAAE---------------
+--------------R
+>KBS0714_MOLHKGIG_01277
+MAARPRRPRPHPADLPPALAAAVTVAARRAGSRESRVRRAGRLVRRGVTGSVRGGVAVAS
+PVARWAPPVLSVAAAYAFVLAGASSALAGVFARTVVTPVRRHAESTPILAVVDTPAGQDV
+ILQADEYTTVPGQYSLTFDDGAGCARIGEITSFDPRDGTVQRAVEEVFSGDLTTATRGRF
+TGFVYPTPADAGLDAEDVQVPVPGGHARAWRIAPYPSEDGEPRPAEGLWAVMVHGRGARR
+NEGIRAVPTARRLGMTSLLISYRNDGDAPDAADARYGLGTTEWEDVEAAIRYALDHGARD
+VVLFGWSMGGAVVLQTVDRSALAPHVRGVVLTGPVIDWVDVLRHQARLNRIPEAVGLLGQ
+WLLANRAGRFITGLAAPVDLKALDWVTRADHVRVPTLILHSEDDEYVPVGPSQDLAERNP
+DLVRFVRFHQARHTREQNVDPRKWDTAVRGWLRAVLSAPRPGGRG---------------
+--------------R
+>KD337_NAFOICDF_01505
+MAC-PR--------------------------RHSPRLRARPDLRDALLGSLRGSAAVAR
+PAARLAPAAASVAASAAFVLAGASAGLAGVFARTVVTPVRSRPEHTAVLAVLDTGDGMDV
+ILPADEHTTVPGTYSLTFHGGEGCARIGAIRSYDPRDGTVQRVVEEVYSGDLRSAVRGRF
+TAFIWPGPAEAGLEAADVEVPVPGGAAPAWRIDPPPAEDGEERAGEGMWAVMVHGRGAVR
+NEGLRAVPTAARLGMTSLLVSYRNDGDAPDAEDARYGLGTTEWEDVEAAVRYALDHGARD
+VVLFGWSMGGAVVLQTADRSDLTSRVRGIVLTGPVVDWMDVLRHQARLNRIPEGIGLLGQ
+WLLSNRAGRLVTGLAAPVDLKALDWVTRADHVRVPTLILHSEDDEYVPVGPSQDLAERNP
+ALVRFVRFHQARHTREQNVDPVKWDRSVRGFLRAVLTAPRPGAVSPPGAPQAPSGSSPRR
+RSSGSSSASRPRNAR
+>SA211_MHAAABBN_00996
+MAARPRRPRPHPADLPPALAAAVTVAARRAGGRDSRVRRAGRLVRRGVTGSVRGGVAVAS
+PVARWAPPVLSVAAASAFVLAGASSALAGVFARTVVTPVRRHAESTPILAVVDTPAGQDV
+ILQADEYTTVPGQYSLTFDDGAGCARIGEITSFDPRDGTVQRAVEEVFSGDLTTATRGRF
+TGFVYPTPADAGLDAEDVQVPVPGGHARAWRIEPDPSEDGEPRPAEGLWAVMVHGRGARR
+NEGIRAVPTARRLGMTSLLISYRNDGDAPDAADARYGLGTTEWEDVEAAIRYALDHGARD
+VVLFGWSMGGAVVLQTVDRSPLAPHVRGVVLTGPVIDWVDVLRHQARLNRIPEAVGLLGQ
+WLLANRAGRFITGLAAPVDLKALDWVTRADHVRVPTLILHSEDDEYVPVGPSQDLAERNP
+DLVRFVRFHQARHTREQNVDPRKWDTTVRGWLRAVLSAPRPGGRG---------------
+--------------R
+>TT9_LFPAFLNI_01235
+MAARPRRPRPHPADLPPALAAAVTVAARRAGGRDSRVRRAGRLVRRGVTGSVRGGVAVAS
+PVARWAPPVLSVAAASAFVLAGASSALAGVFARTVVTPVRRHAESTPILAVVDTPAGQDV
+ILQADEYTTVPGQYSLTFDDGAGCARIGEITSFDPRDGTVQRAVEEVFSGDLTTATRGRF
+TGFVYPTPADAGLDAEDVQVPVPGGHARAWRIEPDPSEDGEPRPAEGLWAVMVHGRGARR
+NEGIRAVPTARRLGMTSLLISYRNDGDAPDAADARYGLGTTEWEDVEAAIRYALDHGARD
+VVLFGWSMGGAVVLQTVDRSPLAPHVRGVVLTGPVIDWVDVLRHQARLNRIPEAVGLLGQ
+WLLANRAGRFITGLAAPVDLKALDWVTRADHVRVPTLILHSEDDEYVPVGPSQDLAERNP
+DLVRFVRFHQARHTREQNVDPRKWDTTVRGWLRAVLSAPRPGGRG---------------
+--------------R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001093.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001093.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9317c7b8065026649f8f72be78f1449991f5958a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001093.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01612
+MAGHSKWATTKHKKAVIDARRAKAFAKYIKNIEVAARAGGADLAGNPALDLAVSKAKKAS
+VPNDNIDRAVKRGAGLTGEVVDYAEIMYEVRGPQGSAVLVECLTDNKNRAAAEVRTAVTR
+NGGTMADSGSVSFLFTRQGVVRLPAEGRTEDELLEAVIEAG--AEEVVLSGDEFEILSDP
+SDLRAVAEALDAAGIDYESDETEFVPTMKVELEDAKGAGTFLKLADALEELDDVQNVYSN
+VDISPEVLAELDQD
+>KBS0714_MOLHKGIG_01275
+MAGHSKWATTKHKKAVIDARRAKAFAKYIKNIEVAARAGGPDVAGNPALDLAVSKAKKAS
+VPNDNIDRAVKRGAGLTGEVIDYAEIMYEVRGPQGSALLVECLTDNKNRAAADVRAAVTR
+NGGTMADSGSVSFLFERKGLVRLPAEGNTEDGLLEAVLEGGADAEEVVVSGDSFEILSDP
+SDLQSVAKALDEAGVEYESDELEFVPTMKVDL-DASGARTFLKLADALEDLDDVQNVFSN
+VDIAPEVLAELDED
+>KD337_NAFOICDF_01507
+MSGHSKWATTKHKKAVIDQRRAKAFAKYIKGIEVAARAGGADLSGNPALDLAVSKAKKNS
+VPNDNIDRAIKRGAGLTGEVIDYTEIMYEVRGPQGSALLVECLTDNKNRAAADVRAAVTR
+NGGTMADSGSVSFLFHRKGVVRLPAAGNTEDSLLEAVLEGGADAEEVVLSGDDFEIVSEP
+GDLRAVAEALDAAGIDYETDEMEHLPTMKVEL-DAKGARTFLKLADALEDLDDVQNVFSN
+VDIAPEVMDELEQD
+>SA211_MHAAABBN_00994
+MAGHSKWATTKHKKAVIDARRAKAFAKYIKNIEVAARAGGPDVAGNPALDLAVSKAKKAS
+VPNDNIDRAVKRGAGLTGEVIDYAEIMYEVRGPQGSALLVECLTDNKNRAAADVRAAVTR
+NGGTMADSGSVSFLFERKGLVRLPAEGNTEDGLLEAVLEGGADAEEVVVSGDSFEILSDP
+SDLQSVAKALDEAGVEYESDELEFVPTMKVDL-DASGARTFLKLADALEDLDDVQNVFSN
+VDIAPEVLAELDED
+>TT9_LFPAFLNI_01233
+MAGHSKWATTKHKKAVIDARRAKAFAKYIKNIEVAARAGGPDVAGNPALDLAVSKAKKAS
+VPNDNIDRAVKRGAGLTGEVIDYAEIMYEVRGPQGSALLVECLTDNKNRAAADVRAAVTR
+NGGTMADSGSVSFLFERKGLVRLPAEGNTEDGLLEAVLEGGADAEEVVVSGDSFEILSDP
+SDLQSVAKALDEAGVEYESDELEFVPTMKVDL-DASGARTFLKLADALEDLDDVQNVFSN
+VDIAPEVLAELDED
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001095.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001095.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4077fd24b91d2de4156239a45c19311d09013d1c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001095.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01614
+MIASLSGTVEHVALDRAVIAVGGFGVQFSATPQTLATLHEGRTGSVQTHLVVKEDALTLF
+GFADRHEREVFEVLITANGVGPRLALAVLSVHHPEAVRRAVTEEDENALTRVPGVGPKLA
+RKIIVELSGRLTPTGEQVPAPEEPAAPE-TPEAAWHADVVQAMTGLGWSEKEALKAVEAT
+VAARPELDEARDVAALLRATLRDVGTAGTVRGGR--
+>KBS0714_MOLHKGIG_01273
+MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHEGRPGAVQTHLVVKEDALTLY
+GFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKMA
+RKIIVELSGRLAPTGEPVPEAEAEASAEPTVEALWHADVVQAMAGLGWSEKEALKAVEAT
+VAARPELDEGRDVAALLRATLRDVGMAGSVRGGR--
+>KD337_NAFOICDF_01509
+MIASLSGTVEHVGLDHAVIAVGGVGLSFSATPQTLSHLHEGRDGAVQTHLVVKEDSLTLF
+GFADRAEREVFEVLLGANGVGPRLALAILAVHRPEAVRRAVTDEDEKALTLVPGIGPKMA
+RKIIVDLAGRLAPTGEVEPEA-AVVEPE-AAADAWHADVVQAMTGLGWSEKEAAKAVAAT
+VATHPDVDASGDVAALLRATLRDVGAAAAVRGGRRA
+>SA211_MHAAABBN_00992
+MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHEGRPGAVQTHLVVKEDALTLY
+GFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKMA
+RKIIVELSGRLAPTGEPVPEAEAEASAEPTVEALWHADVVQAMAGLGWSEKEALKAVEAT
+VAARPELDEGRDVAALLRATLRDVGMAGSVRGGR--
+>TT9_LFPAFLNI_01231
+MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHEGRPGAVQTHLVVKEDALTLY
+GFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKMA
+RKIIVELSGRLAPTGEPVPEAEAEASAEPTVEALWHADVVQAMAGLGWSEKEALKAVEAT
+VAARPELDEGRDVAALLRATLRDVGMAGSVRGGR--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001098.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001098.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e0ee3490f0c7799b366c093eaefa4d62f39fb6f8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001098.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01618
+MNRFADWGNALYSGRVSYPFVQRWRLWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEF
+TVSQTAATDIAAGERAVTDVLAGGHATVTNIAPGTVRVQTEQLDDAQTRQVAANLQDAYG
+VGQDQVTSTFVGPTWGAAVSQQALLGLVIFVVLVTLFMAFYFRTWKMSLAAVIGMLYVVA
+LTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGQEEDPERTFEQNVNL
+AVNQTLVRSITTSIVGILPVGSILFIGAGLLGAGTLRDIALAIFVGIIVGTLSTLFIQAP
+LYALLRRGDEDVRDHDARAAARAARENRGDTVTDPDVAPWEDGARL
+>KBS0714_MOLHKGIG_01269
+MNRFADWGNALYSGRISYPFIQRWRRWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEF
+TVSQTASTDVAAGERAVTDVLADGHATVTNVAPGTVRVQTEQLDDAQTRAVAANLQEAYG
+VGQDQVTSTFVGPTWGAAVSQQALIGLVIFVVLVTLFMAVYFRTWKMSLAAVLGMLYVVA
+LTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGAEEDPERSFVENVNL
+AVNQTLVRSITTSVVGILPVGSILFIGAGLLGAGTLRDIALALFVGIIVGTLSTLFLQAP
+LYALLRRNDPDVRDHDARAAARAARERASEAVTDPDVAPWDDGARL
+>KD337_NAFOICDF_01513
+MNRFADWGNALYSGRISYPFVRKWKTWFLIAAALLAVAFGLTALRGGFNLGIDFRGGSEF
+TVSDAASSELDPGRAAVTDVVAGAEPTVTQVAPGTMRVQTEQLDDAQTRQVAQNLQQAYG
+VTGDHVTSTFVGPTWGQAVSQQAVIGLVIFVVLVTLFMALYFRTWKMSLAAVVGMLYVVA
+LTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTRGVEEDPDRTFDGSVNL
+AVNQTLVRSITTSIVGLLPVGSILFIGAGLLGAGTLRDISLAIFVGIIVGTLSTLFIQAP
+LYALLRRGDADVVAHDARVGADHDEREQEEDLADA------RGAVL
+>SA211_MHAAABBN_00988
+MNRFADWGNALYSGRISYPFIQRWRRWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEF
+TVSQTASTDVAAGERAVTDVLADGHATVTNVAPGTVRVQTEQLDDAQTRAVAANLQEAYG
+VGQDQVTSTFVGPTWGAAVSQQALIGLVIFVVLVTLFMAVYFRTWKMSLAAVLGMLYVVA
+LTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGAEEDPERSFVENVNL
+AVNQTLVRSITTSVVGILPVGSILFIGAGLLGAGTLRDIALALFVGIIVGTLSTLFLQAP
+LYALLRRNDPDVRDHDARAAARAARERASEAVTDPDVAPWDDGARL
+>TT9_LFPAFLNI_01227
+MNRFADWGNALYSGRISYPFIQRWRRWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEF
+TVSQTASTDVAAGERAVTDVLADGHATVTNVAPGTVRVQTEQLDDAQTRAVAANLQEAYG
+VGQDQVTSTFVGPTWGAAVSQQALIGLVIFVVLVTLFMAVYFRTWKMSLAAVLGMLYVVA
+LTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGAEEDPERSFVENVNL
+AVNQTLVRSITTSVVGILPVGSILFIGAGLLGAGTLRDIALALFVGIIVGTLSTLFLQAP
+LYALLRRNDPDVRDHDARAAARAARERASEAVTDPDVAPWDDGARL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001099.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001099.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7daf5f42221fa147dfc14662b4b9dac40f7e7171
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001099.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_01619
+MSEHDPT-----HAPARVAAVRPRGRIARLTGRHATEYSPLLEPLMRTVRQRATKAELADLIRAFEVARAAHEGQMRRSG
+DPYITHPVAVATILAEIGVSGPTLLAALLHDTVEDTDYSLERLRADFGPEVALLVDGVTKLDKVTYGAAAQAETVRKMVI
+AMAQDVNVLLIKLADRLHNARTWRYVSPESSARKAQETLDIYAPLAHRLGMNTVKWELEDLSFAALKPKMYAEIVRLVGE
+RNPEREKHIAALRTVIEDHLREHRIRAEVTGRPKHYYSIYQKMVMRGKDFDEIHDLTGIRVLVDSVRDCYAVLGVIHARW
+NPVPGRFKDYIAVPKLNMYRSLHTTVMGPGGRPVEIQIRTHEMHRQAEYGVAAHWRYKAQAAAESSS-SSSGTPAWLRSV
+MDWQKDTRDPDEFLDSLRTQIGADEVYVFTPSGEIRSLPAGSTPVDFAYAIHTDVGHRTIGAKVNGKLVPLSTPLNHGDT
+VEAFTSRAEDAGPSRDWLGFVVSPRARSKIRHHFATQRRDEQAERGRESLTRQLRRAGLAVQSVLGGEELAQVASDMGYA
+DLDGLLVALGDGHVSAQAVQERVSERLAPPPPARTEPQGELTVGEVDLAELVPAQARRTPARATNDAGVLVDGDGGVMAK
+LARCCNPLPPDAIDGFVTRGSGVSVHRLDCPNLATLLEQEPERRTPVGWAPSRHTVYLVEIQVEALDRKSLLSDVTRVLS
+ENHVNILSASVNTTRDRVAMSRFVFEMGDPRFLGHVIAAVRRIDGVFDVHRT
+>KBS0714_MOLHKGIG_01268
+MSEQDPT----------PVPVRPRGRIARLTGRHATEYSPLLEPLMRTVRQRATKTELADIVRAFEVARAAHEGQMRRSG
+DPYITHPVAVATILAEIGVTGPTLLAALLHDTVEDTDYSLERLRADFGSDVALLVDGVTKLDKVTYGAAAQAETVRKMVI
+AMAQDVNVLLIKLADRLHNARTWRYVSPESSARKAQETLDIYAPLAHRLGMNTVKWELEDLSFAALKPKMYAEIVRLVGE
+RNPEREKHIAALRTVIEDHLREHRIRATVTGRPKHYYSIYQKMVTRGKDFDDIHDLTGIRVLVDSVRDCYAVLGAIHARW
+NPVPGRFKDYIAVPKLNMYRSLHTTVMVPGGKPVEIQIRTQEMHRQAEYGVAAHWRYKAQAAGQAPV-QA--TPAWLRSV
+MDWQADTRDPDEFLASLRTQIGADEVYVFTPKGEIRTLPAGSTPVDFAYAIHTDVGHRTIGARVNGKLVPLSTPLSHGDT
+VEVFTSRAEDAGPSRDWLGFVVSPRARSKIRHHFATQRRGEQADRGRESLTRQLRKAGMTVQHVLGGEELVQLATDLGYA
+DLDGLFVALGDGHVSAQSVQERVAERLAPPTPTQAEPEGELTVGEVDLQELVPAQARRAPARATNDAGVLVDGDGGVMAK
+LARCCNPVPPDAIDGFVTRGSGVSVHRVDCPNLATLLAQEPERHTPVSWAPSRDTVYLVEIQIEALDRKSLLSDVTRVLS
+ENHVNILSASVNTTRDRVAMSRFVFEMGDPRFLGHVIDAVRRIDGVFDVHRT
+>KD337_NAFOICDF_01514
+MTEQDRR----------PAAPPRRGRIARLTGRRATEYSPLLEPLMRTVRQSATHAEQEDIVRAFEVAERAHRGQMRRSG
+DPYITHPVAVATILAELGVTGPTLLAALLHDTVEDTDYSLEQLTADFGPQVALLVDGVTKLDKVTYGAAAQAETVRKMVI
+AMAQDVNVLLIKLADRLHNARTWRYVSPESSAKKARETLDIYAPLAHRLGMNTVKWELEDLSFAALQPKVYAEIVRLVGE
+RNPEREKQLAALRGVLEEQLREQRVRATVTGRPKHYYSVYQKMVTQKKDFAQIYDLTGIRVLVDSVQDCYAVLGVVHARW
+NPVPGRFKDYIAVPKLNMYRSLHTTVMGPEGKPVEIQIRTWEMHRQAEYGVAAHWRYKAGARGELEAGRSQQTPGWLRSV
+MDWQEDTRDPDEFLAALRTQIGADEVYVFTPKGEIRSLPADSTPVDFAYAIHTDVGHRTVGARVNGRLVPLSTVLRHGDT
+VEVFTSKAEDAGPSRDWLNFVVSPRAKSKIRHHFATRRRDEQIERGREAFTRQLRKAGLSVQRVLGGEDLGVVAGELGYH
+DPDTLFAAMADGHVSPQAVTERLEARLAPP-PAPTAPDAELRVGEVDLAGLVPEKARRAPTRSTNEAGVLVNGDGGVLAK
+LARCCNPVPPDEVVGFVTRGSGVSVHRGDCRNLATMLENEPERRVDVAWAPSRDAVYLVEIQVQALDRTSLLSDVTRVLS
+ENHVNILSASVNTTRDRVAMSRFVFEMGDPKFLEHVVNAVRRIDGVFDVRRT
+>SA211_MHAAABBN_00987
+MSEQDPTPAPARPAPARPAPVRPRSRIARLTGRHATEYSPLLEPLMRTVRQRATKTELAEIVRAFEVARAAHEGQMRRSG
+DPYITHPVAVATILAEIGVTGPTLLAALLHDTVEDTDYSLERLRADFGSEVALLVDGVTKLDKVTYGAAAQAETVRKMVI
+AMAQDVNVLLIKLADRLHNARTWRYVSPESSARKAQETLDIYAPLAHRLGMNTVKWELEDLSFAALKPKMYAEIVRLVGE
+RNPEREKHIAALRTVIEEHLREHRIRATVTGRPKHYYSIYQKMVTRGKDFDDIHDLTGIRVLVDSVRDCYAVLGVIHARW
+NPVPGRFKDYIAVPKLNMYRSLHTTVMVPGGKPVEIQIRTQEMHRQAEYGVAAHWRYKAQVAGQAPV-QA--TPAWLRSV
+MDWQADTRDPDEFLASLRTQIGADEVYVFTPKGEIRTLPAGSTPVDFAYAIHTDVGHRTIGARVNDKLVPLSTPLSHGDT
+VEVFTSRAEDAGPSRDWLGFVVSPRARSKIRHHFATQRRDEQADRGRESLTRQLRKAGMAVQQVLGGEELVQVATDLGYA
+DLDGLFVALGDGHVSAQSVQERVAERLAPPTSTQAEPEGELTVGEVDLQELVPAQSRRAPARATNDAGVLVDGDGGVMAK
+LARCCNPVPPDAIDGFVTRGSGVSVHRVDCPNLATLLAQEPERRTPVSWAPSRDTVYLVEIQIEALDRKSLLSDVTRVLS
+ENHVNILSASVNTTRDRVAMSRFVFEMGDPRFLGHVIDAVRRIDGVFDVHRT
+>TT9_LFPAFLNI_01226
+MSEQDPTPAPARPAPARPAPVRPRSRIARLTGRHATEYSPLLEPLMRTVRQRATKTELAEIVRAFEVARAAHEGQMRRSG
+DPYITHPVAVATILAEIGVTGPTLLAALLHDTVEDTDYSLERLRADFGSEVALLVDGVTKLDKVTYGAAAQAETVRKMVI
+AMAQDVNVLLIKLADRLHNARTWRYVSPESSARKAQETLDIYAPLAHRLGMNTVKWELEDLSFAALKPKMYAEIVRLVGE
+RNPEREKHIAALRTVIEEHLREHRIRATVTGRPKHYYSIYQKMVTRGKDFDDIHDLTGIRVLVDSVRDCYAVLGVIHARW
+NPVPGRFKDYIAVPKLNMYRSLHTTVMVPGGKPVEIQIRTQEMHRQAEYGVAAHWRYKAQVAGQAPV-QA--TPAWLRSV
+MDWQADTRDPDEFLASLRTQIGADEVYVFTPKGEIRTLPAGSTPVDFAYAIHTDVGHRTIGARVNDKLVPLSTPLSHGDT
+VEVFTSRAEDAGPSRDWLGFVVSPRARSKIRHHFATQRRDEQADRGRESLTRQLRKAGMAVQQVLGGEELVQVATDLGYA
+DLDGLFVALGDGHVSAQSVQERVAERLAPPTSTQAEPEGELTVGEVDLQELVPAQSRRAPARATNDAGVLVDGDGGVMAK
+LARCCNPVPPDAIDGFVTRGSGVSVHRVDCPNLATLLAQEPERRTPVSWAPSRDTVYLVEIQIEALDRKSLLSDVTRVLS
+ENHVNILSASVNTTRDRVAMSRFVFEMGDPRFLGHVIDAVRRIDGVFDVHRT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001101.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001101.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7b9af4bed3c99b392df82fe448c4731a5124cd0a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001101.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01621
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--MPDASSEDALAYFVRKYDDVRAQMALFEQRIAAGAPSSELGKALGQMTSAVNERHMVGDMDALRTRLAALETLLGDYR
+GAEQEARQAAQAQQLATREAIVAEAEEFAATPAERMPWKTASTRMTALFEEWKAAQKAGPRLSKSVEDGLWKRFRGARTA
+FDKTRRAHFSQLDAKSAEAKQVKERLIARAEELSSSTDWGVTAGKYRDLMDEWKRAPRASRKEDDALWARFRAAQDVFFD
+ARKAVNQEIDREYGANLKVKEQILADGKKLLPFKDVKAGRRALNELRGRWEDAGRVPRGDVRRMEEGFRSLEDALKQAEN
+EHWRRTDPETKARTSSALTQLEETIAGLEADLAKAQASGDERAVKKAQEALDARLQWKQALEASASELS
+>KBS0714_MOLHKGIG_01266
+M----QPDDQQSP-ATEATPASAEAAETTVPAEARP---VPEIVP----------------DAPAHGDSAQPAEA-----
+------------PAVPSPAAMKKASPAAVRPATPAAASAVPAPVVAPTVPPTPVEEAARFARVSEDGHVTLLDGQEEHAV
+GQVPDASTEDALAYFVRKYDDVRAQMALFEQRIAAGAPSSELGRALGQMTTAVNERHMVGDMDALRTRLAALETLLADYR
+AAEQEARQAAQAEQLATREAIVAEAETFAQTPAERMPWKTASKRMTELFEEWKAAQKAGPRLAKSVEDDLWKRFRGARTT
+FDKTRRAHFSRLDAASAEAKQVKERLIARAEELSTSTDWGVTAGKYRDLMDEWKRAPRASRKEDDALWARFRAAQDVFFA
+ARKAANQEIDREYGANLKVKEQILADGQKLLPFTDVKAGRRALNELRGRWEDAGRVPRGDVRRMEEGFRRLEDALKQAEN
+EHWRRTDPETKARTNSALTQLEETIAGLEADLARAQAQGDQRAVKKAQEALDARLKWKQALEASASELR
+>KD337_NAFOICDF_01516
+MTHQPQSDDQQTPDAEQATPAA--APQQTSPAQDAPEQVVQDQTPAAQADLADALGSIESVEAPAPAQGEEPADAAETDA
+EKTPEAAPSPAVPAAPSPAALKRS--AAPRSAAPRPATAAVPVAPAPSVEPTPLGEAAAFARVSEDGHVTLLDGADEVAV
+GQVPDATEQDALAYFVRKYDDVRAQMALFEQRIAAGAPSSELGKALGQMTAAVTERHMVGDMPALRTRLAALETLLGDYR
+AAEAERRQAAQAEQLATREAIVTEAEKFAATPAERMPWKQASARMTELFDEWKTAQKAGPRLSKSVEDGLWKRFRGARTQ
+FDKTRRAHFSQLDARSAEAKQVKERLIARAEELSSSTDWGVTAGKYRDLMDEWKRAPRASRKEDDALWARFRAAQDVFFA
+ARKAENAAVDREFGENLKVKEQILADGQKLLPFTDLKAGRKALNELRGRWEDAGKVPRGDIRRMEDGFRKLEDALKQAEN
+EHWRRTDPETKARTNSALTQLEETIAGLEADLAEAQAAGDQKRIATAQEALDARLQWKQALEASASELR
+>SA211_MHAAABBN_00985
+M----QPDDQQSP-ATESTPASAEAADTTVPAEARP---VPEIVP----------------DAPAHGDSSQPAET-----
+------------PAVPSPAAMKKASPAAVRPATPAAASVAPAPVVAPTVPPTPVEEAARFARVSEDGHVTLLDGQEEHAV
+GQVPDASTEDALAYFVRKYDDVRAQMALFEQRIAAGAPSGELGRALGQMTTAVNERHMVGDMDALRTRLAALETLLGDYR
+AAEQEARQAAQAEQLATREAIVAEAETFAQTPAERMPWKTASKRMTELFEEWKAAQKAGPRLAKSVEDDLWKRFRGARTA
+FDKTRRAHFSRLDAASAEAKQVKERLIARAEELSTSTDWGVTAGKYRDLMDEWKRAPRASRKEDDALWARFRAAQDVFFA
+ARKAANQEIDREYGANLKVKEQILADGQKLLPFTDVKAGRRALNELRGRWEDAGRVPRGDVRRMEEGFRKLEDALKQAEN
+EHWRRTDPETKARTNSALTQLEETIAGLEADLARAQARGDQRAVKKAQEALDARLQWKQALEASASELR
+>TT9_LFPAFLNI_01224
+M----QPDDQQSP-ATESTPASAEAADTTVPAEARP---VPEIVP----------------DAPAHGDSSQPAET-----
+------------PAVPSPAAMKKASPAAVRPATPAAASVAPAPVVAPTVPPTPVEEAARFARVSEDGHVTLLDGQEEHAV
+GQVPDASTEDALAYFVRKYDDVRAQMALFEQRIAAGAPSGELGRALGQMTTAVNERHMVGDMDALRTRLAALETLLGDYR
+AAEQEARQAAQAEQLATREAIVAEAETFAQTPAERMPWKTASKRMTELFEEWKAAQKAGPRLAKSVEDDLWKRFRGARTA
+FDKTRRAHFSRLDAASAEAKQVKERLIARAEELSTSTDWGVTAGKYRDLMDEWKRAPRASRKEDDALWARFRAAQDVFFA
+ARKAANQEIDREYGANLKVKEQILADGQKLLPFTDVKAGRRALNELRGRWEDAGRVPRGDVRRMEEGFRKLEDALKQAEN
+EHWRRTDPETKARTNSALTQLEETIAGLEADLARAQARGDQRAVKKAQEALDARLQWKQALEASASELR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001102.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001102.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a53e53724678c9a9cda59a96f610d522a4a9538e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001102.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01622
+MSRKASLSGFHEWLPAERLVEQHVLDTLRRTFELHGFAGIETRAVETLGQLLRKGEVDKE
+VYAVSRLAEDEEVAAGRREAKDPADPKRLALHFDLTVPFARYVVENAGHLAFPFRRYQMQ
+KVWRGERPQEGRAREFTQADIDVVGDGELSPRHDADVALVMAEALGALPIGDFLIRVNNR
+KLAEGFYRGIGLTDAAGVLRSIDKLEKIGADEVARLLQEEVGASPEQARQALALAAIRTE
+DVSFVEQVRALGVSDPLLEEGLAELADVVETLHRRAPGRAVADLSIARGLDYYTGTVYET
+VLVGHEQLGSICSGGRYDALASKGNRVFPGVGLSIGVTRLVMRMLSQEMAQASRSVPTAV
+YVALTADEDWSEAQDVAALLRERGIPAEVAVSAEKFGKQIKYADRRGIPFVWFLGRDDAG
+ARVHEVKDIRSGDQHPADPADWTPPSEDLLPQVTRTESTEG
+>KBS0714_MOLHKGIG_01265
+MSRKASLSGFHEWLPAERLVEQHVLDTLRRTFELHGFAGIETRAVETLGQLLRKGEVDKE
+VYAVSRLAEDEEVAAGRREPKDPADPKRLALHFDLTVPFARYVVENAGHLAFPFRRYQMQ
+KVWRGERPQEGRAREFTQADIDVVGDGALSPRYDADVALVMAEALGALPIGDFLIRVNNR
+KLAEGFYRGIGLEDTAGVLRSIDKLEKVGPEEVARLLQEEVGASPEQAAQALALADIRTS
+DTSFVERVRALGVTHELLEEGLTELADVVATLHRRAPGRAVADLSIARGLDYYTGTVYET
+VLVGHEQLGSICSGGRYDALASKGNRVFPGVGLSIGVTRLVMRMLSQQMAVASRSVPTAV
+YVALTADEDWSEAQDVAALLRERGIPAEVAVSAEKFGKQIKYADRRGIPFVWFMGRDDAG
+ARVHEVKDIRSGEQHAVDPADWTPPTEDLLPQITRTQD---
+>KD337_NAFOICDF_01517
+MSRKQSLSGFHEWLPAERIVEQHVLDTLRRTFELHGFAGIETRAVETLGQLLRKGEVDKE
+VYAVSRLAEDQEVAEGVREAKDPSDPKRLALHFDLTVPFARYVTENAGHLAFPFRRHQIQ
+KVWRGERPQEGRAREFTQADIDVVGDGELSPRYDADVALVMAEALGALPIGDFRIRVNNR
+KLAEGFYRGIGLEDAAGVLRSIDKLEKVGAEEVARLLQEEVGATAEQAAQALKLAEIRTP
+DTAFVEQVRALGVEDPLLEEGLAELADVVATLHRRAPGRAVADLSIARGLDYYTGTVYET
+VLVGHEQLGSICSGGRYDALATKGNRAFPGVGLSIGVTRLVMRMLSQEMAVASRAVPTVV
+YVALTHDDDWSRAQDVAAGLRGRGIAAEVAVSAEKFGKQIKYADRRGIPFVWFLGAEGAS
+---DEVKDIRSGEQVPADAATWAPPAEDLVPQVTESPRAED
+>SA211_MHAAABBN_00984
+MSRKASLSGFHEWLPAERLVEQHVLDTLRRTFELHGFAGIETRAVETLGQLLRKGEVDKE
+VYAVSRLAEDEEVAAGLRDPKDPADPKRLALHFDLTVPFARYVVENAGHLAFPFRRYQMQ
+KVWRGERPQEGRAREFTQADIDVVGDGALSPRYDADVALVMAEALGALPIGDFLIRVNNR
+KLAEGFYRGIGLEDTAGVLRSIDKLEKVGPEEVARLLQEEVGASPEQAAQALALADIRTS
+DTSFVERVRALGVTHELLEEGLTELADVVATLHRRAPGRAVADLSIARGLDYYTGTVYET
+VLVGHEQLGSICSGGRYDALASKGNRVFPGVGLSIGVTRLVMRMLSQQMAVASRSVPTAV
+YVALTADEDWSEAQDVAALLRERGIPAEVAVSAEKFGKQIKYADRRGIPFVWFMGRDDAG
+ARVHEVKDIRSGEQHAADPADWTPPAEDLLPQVARAQD---
+>TT9_LFPAFLNI_01223
+MSRKASLSGFHEWLPAERLVEQHVLDTLRRTFELHGFAGIETRAVETLGQLLRKGEVDKE
+VYAVSRLAEDEEVAAGLRDPKDPADPKRLALHFDLTVPFARYVVENAGHLAFPFRRYQMQ
+KVWRGERPQEGRAREFTQADIDVVGDGALSPRYDADVALVMAEALGALPIGDFLIRVNNR
+KLAEGFYRGIGLEDTAGVLRSIDKLEKVGPEEVARLLQEEVGASPEQAAQALALADIRTS
+DTSFVERVRALGVTHELLEEGLTELADVVATLHRRAPGRAVADLSIARGLDYYTGTVYET
+VLVGHEQLGSICSGGRYDALASKGNRVFPGVGLSIGVTRLVMRMLSQQMAVASRSVPTAV
+YVALTADEDWSEAQDVAALLRERGIPAEVAVSAEKFGKQIKYADRRGIPFVWFMGRDDAG
+ARVHEVKDIRSGEQHAADPADWTPPAEDLLPQVARAQD---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001106.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001106.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5bfaa47fa2c63e6a22b47c1f8dfdfa4ca54cf0b7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001106.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01627
+---MRTLSRLAAATSMVALSAAVVAPLTVAAP------------AANPSGRSIELTAAGTHATGVFDASAAEIPAFDKTT
+GRLFVVNAQKGAIDVLTVGEDAEPAAESVLSVAGLPAADGSVTGAGAVVNSVAVAGAVMAATVEAEDKTGHGWLVFFDTR
+TLGFLGGVRVGALPDSVALAPNGAYAVVANEGEPADDFSSDPEGTISVVSVPKNARQFARLGQDAVRTVDFRAYDEGAAL
+PEGVRVFGPDVAVPSGHEEAGRIARNLEPEYASIDPTGRTAYVSVQEANAVVAVDLASASLADFWALHLTDWSTEGVLDV
+SDKDGAISPAYQPVLGVPMPDGLATYKHRGQTLVVTANQGDSREWGDFVDAERVKDLELCGDVFPHAKALQKNEALGRLN
+VLTDLGYDAERGCHTELHALGGRGFSIYTADGQRLFDSSGMLEEQIARLIAAGELPAHAFNANNDETPSFDSRSDDKGVE
+PESVVVGEVQGRQYAFVGLERIGGVMVFDITDPTDARYVDYINERAWDAVGEDGDAGLGDMGAEGLAFVPASDSPSGTAL
+LIVATEVSGSTTVYEVDPVKGGKRT
+>KBS0714_MOLHKGIG_01261
+---MPRLARLATAVTAAALSTAFLAPASLSAPAPHSATAQRAAIAANPSGKSIELTRAGTHETGVFGESAAEIPAFDAVS
+GRLFVVNAQRGAVDVMRLGADAAPVAERTLSAEGLRTADGSVTDKGATVNSVAVSGGVMAVAVEAAEKTDHGWVVFFDTT
+TLRYLGGVRVGALPDSLAFSPNGAYVVVANEGEPADDFSVDPEGTISVVSVPKNARQFSRLTQDAVRTVDFRAYDAGTAL
+PAGVRVSGPDMAVPAGHEPAGRVARNLEPEYVTVDPTGRTAYVSVQEANAVAVVDLKSATLEDLWALTPTDWSTEGVLDA
+SDKDGGIELGHWPVDGLPMPDGIDTYRWRGQNLVVTANEGDGREWGDFNDSERVSDLDLCAAEFPGAKALQKKDALGRLK
+VLTDLGYDSERECHSSLTTLGGRSFSIYTADGTRLFDSAGMIEEQIARLVAAGELPEHAFNANNDETPSGDSRSDDKGPE
+PESVVVGTIQGRTYAFVGLERIGGVVVFDITDPRNATYVDYVNDRDWDAAGDDATAGLGDMGAEGLTFVPADESPSGTAL
+LIVANEVSGSTTVYEVNPTR---RQ
+>KD337_NAFOICDF_01524
+MSRIVRLTRLGAAAGALALSAAVVAPSAVSAPVTATAA------AANPSGKTVELSLAGTHETGVFGESAAEIPAFDAAT
+GRLFVVNAEKGAVDVLRVGADGAPAAETVLSAEGLRTADGSVTDGGATVNSVAVSGGVLAVAVEAADKTGLGWVAFFDTT
+TLSYLGGVRVGALPDSIAFSPDGAYAVVANEGEPADDFSADPEGTISVISVPKNVRQFARLTQAAVRTVDFRAYDAGTAL
+PEGVRVFGPDVQVPEGQEPAGRIARNLEPEYVTIDDTGRTAYVSVQEANAVVAVDLKSATLKDFWALQLTDWSKEGVLDA
+SNEDKAITLRNQPVLGVPMPDGVDTYRYRGQDLVVTANEGDSREWGDFVDAARVKDLELCTAEYPDAKALQKKPALGRLN
+VVTDLGYDADRDCFSQLHAFGGRSFSIYTADGTRLFDSAGMIEEQIAQLIADGELPESAFNANNDETPSFDSRSDDKGPE
+PEAVVVGRVQGRTYAFVGLERIGGVMVFDITDPTKATYVDYVNERNWDAEGDDAAAGLGDMGAEGLTFVPANESPSGTAL
+LVVANEVSGSTTVYEVNPVR---R-
+>SA211_MHAAABBN_00980
+---MPRLARLATAVTAATLSTAFLAPASLSAPAPHSATAQRAAIAANPSGKSIELTRAGTHETGVFGESAAEIPAFDAVS
+GRLFVVNAQRGAVDVMRLGADAAPVAERTLSAEGLRTADGSVTDKGATVNSVAVSGGVMAVAVEAAEKTDHGWVVFFDTT
+TLRYLGGVRVGALPDSLAFSPNGAYVVVANEGEPADDFSVDPEGTISVVSVPKNARQFSRLTQDAVRTVDFRAYDAGTAL
+PAGVRVSGPDMAVPAGHEPAGRVARNLEPEYVTVDPTGRTAYVSVQEANAVAVVDLKSATLEDLWALTPTDWSTEGVLDA
+SDKDGGIELGHWPVDGLPMPDGIDTYRWRGQNLVVTANEGDGREWGDFNDSERVSDLDLCAAEFPGAKALQKKDALGRLK
+VLTDLGYDSERECHSSLTTLGGRSFSIYTADGTRLFDSAGMIEEQIARLVAAGELPEHAFNANNDETPSGDSRSDDKGPE
+PESVVVGTIQGRTYAFVGLERIGGVVVFDITDPRNATYVDYVNDRDWDAAGDDATAGLGDMGAEGLTFVPADESPSGTAL
+LIVANEVSGSTTVYEVNPTR---RQ
+>TT9_LFPAFLNI_01219
+---MPRLARLATAVTAATLSTAFLAPASLSAPAPHSATAQRAAIAANPSGKSIELTRAGTHETGVFGESAAEIPAFDAVS
+GRLFVVNAQRGAVDVMRLGADAAPVAERTLSAEGLRTADGSVTDKGATVNSVAVSGGVMAVAVEAAEKTDHGWVVFFDTT
+TLRYLGGVRVGALPDSLAFSPNGAYVVVANEGEPADDFSVDPEGTISVVSVPKNARQFSRLTQDAVRTVDFRAYDAGTAL
+PAGVRVSGPDMAVPAGHEPAGRVARNLEPEYVTVDPTGRTAYVSVQEANAVAVVDLKSATLEDLWALTPTDWSTEGVLDA
+SDKDGGIELGHWPVDGLPMPDGIDTYRWRGQNLVVTANEGDGREWGDFNDSERVSDLDLCAAEFPGAKALQKKDALGRLK
+VLTDLGYDSERECHSSLTTLGGRSFSIYTADGTRLFDSAGMIEEQIARLVAAGELPEHAFNANNDETPSGDSRSDDKGPE
+PESVVVGTIQGRTYAFVGLERIGGVVVFDITDPRNATYVDYVNDRDWDAAGDDATAGLGDMGAEGLTFVPADESPSGTAL
+LIVANEVSGSTTVYEVNPTR---RQ
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001108.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001108.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b9597e1060102998ff3550a5a1e5a23a13e48490
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001108.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01629
+MSQHQPYAQDPRSTV---PATTADAAYAGGPLGAADHRVLESVPDYARAQAIVDQLSDAG
+FPVEHVRIVGTGLRTVEQVLGRMTTGKAAGRGAVQGLWFGLLLGLLFSIFSPGFGFLWIL
+LISLGLGALWGAVFGAIGHAATRGRRDFSSLQTMDAASYEVQVEAAHLDRARQTLGAGP-
+--AAPRA
+>KBS0714_MOLHKGIG_01258
+MTQSTPQQSTPQHTAAQQPAPYGRPGAGGPALPQADYRILRSVPAYAEAQALVDQLSDAG
+FPVERVRIVGTGLRSVEQVLGRMTTGKAAVRGGLQGLWFGLLLGLLFSIFAPGFGFLWIL
+LISLGLGALWGAVFGAIGHAATGGRRDFTSLQTMEAESYDVLVEASHLDQAGQLLGADPG
+TAATPRA
+>KD337_NAFOICDF_01527
+MSA-----------------------------SAAHYAVLSTVPDYAHAQSTVDRLSDSG
+FPVEHVRVAGTGLRSVEQVTGRLTTGAVGV------------------------------
+------------------------------------------------------------
+------C
+>SA211_MHAAABBN_00977
+MTQSTPQQSTPQHTAAQQPAPYGRPGAGGPALPQADYRILRSVPAYAEAQALVDQLSDAG
+FPVERVRIVGTGLRSVEQVLGRMTTGKAAVRGGLQGLWFGLLLGLLFSIFAPGFGFLWIL
+LISLGLGALWGAVFGAIGHAATGGRRDFTSLQTMEAESYDVLVEASHLDQAGQLLGADPG
+TAATPRA
+>TT9_LFPAFLNI_01216
+MTQSTPQQSTPQHTAAQQPAPYGRPGAGGPALPQADYRILRSVPAYAEAQALVDQLSDAG
+FPVERVRIVGTGLRSVEQVLGRMTTGKAAVRGGLQGLWFGLLLGLLFSIFAPGFGFLWIL
+LISLGLGALWGAVFGAIGHAATGGRRDFTSLQTMEAESYDVLVEASHLDQAGQLLGADPG
+TAATPRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001109.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001109.fa
new file mode 100644
index 0000000000000000000000000000000000000000..472208e35ec302bd36e8c23e6e548c782bc0e28b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001109.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01630
+MSGNLRTRRTVRHSRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRL
+RAQYNIREAQMRRYFEEAKRTAGLTGENLVELLEMRLDALVLRAGFARTIQQARQLVVHR
+HIMVDGKRVDIPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIDKL
+RATLTRRPKRSEVPVTCEEQLVVEYYAR
+>KBS0714_MOLHKGIG_01257
+MSGNLRTRRTVRHSRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRL
+RAQYNIREAQMRRYFEEAKRTAGLTGENLVELLEQRLDALVLRAGFARTIQQARQLVVHR
+HIMVDGKRVDVPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIDKL
+RATLTRRPKRSEVPVTCEEQLVVEYYAR
+>KD337_NAFOICDF_01528
+MSGNLRTRRTVRHSRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRL
+RAQYNIREAQMRRYFEEAKRTAGLTGENLVELLEMRLDALVLRAGFARTIQQARQLVVHR
+HIMVDGKRVDIPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIEKL
+RATLTRRPKRSEVPVTCEEQLVVEYYAR
+>SA211_MHAAABBN_00976
+MSGNLRTRRTVRHSRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRL
+RAQYNIREAQMRRYFEEAKRTAGLTGENLVELLEQRLDALVLRAGFARTIQQARQLVVHR
+HILVDGKRVDVPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIDKL
+RATLTRRPKRSEVPVTCEEQLVVEYYAR
+>TT9_LFPAFLNI_01215
+MSGNLRTRRTVRHSRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRL
+RAQYNIREAQMRRYFEEAKRTAGLTGENLVELLEQRLDALVLRAGFARTIQQARQLVVHR
+HILVDGKRVDVPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIDKL
+RATLTRRPKRSEVPVTCEEQLVVEYYAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001110.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001110.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b2086091320711d927c3203b0f332764665efae9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001110.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01632
+M--LRSLLLVTAGAASGWLAHRALGDRA--AADA--APGRSDAGPQARPG-RARLDPEHL
+ARQAGQAVGDAAAAALNEGARRLADRVRAEA-PWAAQFLPHTGPIIEGETVEPPSPSGPG
+GPRPQTTIPTTTTQKDTHA
+>KBS0714_MOLHKGIG_01256
+M--LRSLLLVGAGAASGWFAHRALGDRAHPATDATDAPTSDPGSAGGRAGFSARLDPERL
+ARQAGEAAADAAAAALQDGARRLAERVRAEA-PWAAPYLPHTGPIISGETVEPPS---HG
+AARPQ----TTTTQKDTPA
+>KD337_NAFOICDF_01529
+MSRITSLLLVGAGTAAGWIAHRAV-ESGRRAVDQ---------EAGRR--LQETLDPTRL
+GRSAGQAVGDAAAEALAQSAQAFTERLRADAPPWVSQLIGPPRDTIEGEALDTPD-----
+-----TTATPSSARKDPHA
+>SA211_MHAAABBN_00975
+M--LRSLLLVGAGAASGWFAHRALGDRAHPATDATDAPTSDPGSAGGRAGFSARLDPERL
+ARQAGEAAADAAAAALQDGARRLAERVRAEA-PWAAPYLPHTGPIISGETVEPPS---HG
+AARPQ----TTTTQKDTPA
+>TT9_LFPAFLNI_01214
+M--LRSLLLVGAGAASGWFAHRALGDRAHPATDATDAPTSDPGSAGGRAGFSARLDPERL
+ARQAGEAAADAAAAALQDGARRLAERVRAEA-PWAAPYLPHTGPIISGETVEPPS---HG
+AARPQ----TTTTQKDTPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001112.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001112.fa
new file mode 100644
index 0000000000000000000000000000000000000000..80e424ef3c92383b16e035149ea4b3db17785709
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001112.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01634
+MSAGQDGAATATDAVRRGRTLGVDVGRARVGLATADPDGLIATPVATLARDARRGRDVGE
+LVAHALELDVVAVYVGLPVNLRGEHTPSTQDALDYARSVARAPAAAGHAVPVRLVDERLS
+TVSAQAGLRAAGRTVKDSRGVIDQAAAVAILQAAVDEQRRTGRWAGQDPEEIA-
+>KBS0714_MOLHKGIG_01254
+MSAGQDGANAATDAVRRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDE
+LVAHARELDVVAVYVGLPVNLRGEHTPSTQDALDYADAVAAALAEAGHPVPVRLVDERLS
+TVSAQAGLRAAGRSVKDSRGVIDQAAAVAILQAAVDEQRRTGRWAGQDREPIR-
+>KD337_NAFOICDF_01531
+---------MSAQAAVRGRVLGVDVGRARVGLAASDPDGLIATPVETLRRDARQRRDHAE
+LLDRARELDAVAVYVGLPRNLRGEHTPSTQDAVEYAAAIEALVAEAGTPIPVRLVDERLS
+TVSAQAALHRAGRTVKDSRGVIDQAAAVELLQDALEVQRRRGAWAGITVAEARA
+>SA211_MHAAABBN_00973
+---------MASDAVRRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDE
+LVAHARELDVVAVYVGLPVNLRGEHTPSTQDALDYADAVAAALVEAGHPVPVRLVDERLS
+TVSAQAGLRAAGRSVKYSRGVIDQAAAVAILQAAVDEQRRTGRWAGQDREQIR-
+>TT9_LFPAFLNI_01212
+---------MASDAVRRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDE
+LVAHARELDVVAVYVGLPVNLRGEHTPSTQDALDYADAVAAALVEAGHPVPVRLVDERLS
+TVSAQAGLRAAGRSVKDSRGVIDQAAAVAILQAAVDEQRRTGRWAGQDREQIR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001122.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001122.fa
new file mode 100644
index 0000000000000000000000000000000000000000..536479b50046e3ff711ad1ec2dd8c45696d552f1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001122.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01646
+MSTPTDDLALLVLEDGTVHRGRAYGARGRTLGEAVFTTGMTGYQETLTDPSYAGQIIVQT
+SPHIGNTGVNDTDRESRAIFAAGYVVRDAARRPSNWRAERTLDEELEAFGVVGIREVDTR
+AITRRLRTEGSMRAGVYSGEHAGRPEAELLAEVREQPSMAGARLAETVTTEQPYVIEPAA
+HGWEGEPLAEIAALDLGIKAATPRHLASRGIRVHVLPATAGLEEIRAVSPDGVFLSNGPG
+DPATADAQVALLREVLDAGLPFFGICFGNQIFGRALGFDTYKLKFGHRGPNQPVMDNATG
+RVAITSQNHGFAVDAPLGEPVEAPETRYGRVEVSHWSLNDQVVEGLRLLDRPAFSVQFHP
+ESAAGPNDTLDLFDRFVRMLTEHRDAAAPAATEGA
+>KBS0714_MOLHKGIG_01242
+MSTPTDDLALLVLEDGTVHRGRAYGARGRTLGEAVFTTGMTGYQETLTDPSYAGQIIVQT
+SPHIGNTGVNDADRESRAIFAAGYVVRDAARRPSNWRAERTLDEELEAFGVVGIREVDTR
+AITRRLRTEGSMRAGVFSGEHAARPEAELLAEVRAQPSMAGARLAESVTTEQPYVIEPAE
+HGWEGEPIAEIAALDLGIKAATPRHLASRGIRVHVLPAATDLAGIRAVDPDGVFLSNGPG
+DPATADAQVELLREVLDAGLPFFGICFGNQIFGRALGFDTYKLKFGHRGPNQPVLDKATG
+RVAITSQNHGFAVAAPLGEPIEAPESRFGRVEVSHWSLNDQVVEGLRLLDRPAFSVQFHP
+ESAAGPNDTLDLFDRFVQLLTEHRAATTP-ATEGA
+>KD337_NAFOICDF_01543
+MSTPTPETALLVLEDGTVHRGRAYGARGSTLGEAVFTTGMTGYQETLTDPSYARQIVVQT
+APHIGNTGVNDEDAESRAIWVAGYVVRDAARRPSNWRSQRTLDEELAAHGVVGIQDVDTR
+AITRALRTEGSMKAGIFSGEAAQRPEAELLAEVREQPSMAGARLAETVSAPSAYVVEPSD
+HGWDGEPIADVAALDLGIKAATPHHLAARGIRVHVLPADSDFAAIQAVRPDGVFMSNGPG
+DPATADAQVAVLREVLDAGLPYFGICFGNQIFGRALGFGTYKLPFGHRGPNQPVMDKATG
+RVEITSQNHGFAVDAPIGEVVEAPEARYGRVEVSHWSLNDDVVEGLRLLDRPAFSVQFHP
+EAAAGPHDSLGLFDRFAHTLTERRAAAPSATPEGA
+>SA211_MHAAABBN_00961
+MSTPTDDLALLVLEDGTVHRGRAYGARGRTLGEAVFTTGMTGYQETLTDPSYAGQIIVQT
+SPHIGNTGVNDADRESRAIFAAGYVVRDAARRPSNWRAERTLDEELETFGVVGIREVDTR
+AITRRLRTEGSMRAGVFSGEHAARPEAELLAEVRAQPSMAGARLAESVTTEQPYVIEPAE
+HGWEGEPIAEIAALDLGIKAATPRHLASRGIRVHVLPAATDLAGIRAVDPDGVFLSNGPG
+DPATADAQVELLREVLDAGLPFFGICFGNQIFGRALGFDTYKLKFGHRGPNQPVLDKATG
+RVAITSQNHGFAVDAPLGEPIEAPESRFGRVEVSHWSLNDQVVEGLRLLDRPAFSVQFHP
+ESAAGPNDTLDLFDRFVQLLTEHRAATTP-ATEGA
+>TT9_LFPAFLNI_01200
+MSTPTDDLALLVLEDGTVHRGRAYGARGRTLGEAVFTTGMTGYQETLTDPSYAGQIIVQT
+SPHIGNTGVNDADRESRAIFAAGYVVRDAARRPSNWRAERTLDEELEAFGVVGIREVDTR
+AITRRLRTEGSMRAGVFSGEHAARPEAELLAEVRAQPSMAGARLAESVTTEQPYVIEPAE
+HGWEGEPIAEIAALDLGIKAATPRHLASRGIRVHVLPAATDLAGIRAVDPDGVFLSNGPG
+DPATADAQVELLREVLDAGLPFFGICFGNQIFGRALGFDTYKLKFGHRGPNQPVLDKATG
+RVAITSQNHGFAVAAPLGEPIEAPESRFGRVEVSHWSLNDQVVEGLRLLDRPAFSVQFHP
+ESAAGPNDTLDLFDRFVQLLTEHRAATTP-ATEGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001125.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001125.fa
new file mode 100644
index 0000000000000000000000000000000000000000..690532bf806bcb67d96abc3db2490d93d3cca89c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001125.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01649
+MALRQLSVEERAEARSKALAARQERAALKADFAAGQVSLAEVFSRADAEDAIGRLRTVDL
+LQALPGVGEVRAREAMAGCGISPRRRLRGLGRRQREALIAYIGR
+>KBS0714_MOLHKGIG_01239
+MALRQLSVQERAEARRKALQARQARAELKAAFAAGEVGLADIFARADADDAVARLRTVDL
+LLALPGVGEVRAREAMAGCGISPRRRLGGLGRRQREALIAYIGR
+>KD337_NAFOICDF_01546
+MALRQLSVEERAEARAKALRARQERATLKTSFANRDLSLQEVFARADVDPAIGRLRTVDL
+LQAMPGVGEVRASAVMEACEISPARRLKGLGRRQREALIAYIGR
+>SA211_MHAAABBN_00958
+MALRQLSVQERAEARRKALQARQARAELKAAFAAGAVGLADVFARADTEDAVARLRTVDL
+LLALPGVGEVRARETMAGCGISPRRRLGGLGRRQREALIAYIGR
+>TT9_LFPAFLNI_01197
+MALRQLSVQERAEARRKALQARQARAELKAAFAAGEVGLADIFARADADDAVARLRTVDL
+LLALPGVGEVRAREAMAGCGISPRRRLGGLGRRQREALIAYIGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001127.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001127.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f6a840bf11f3749997faaa263f684a867f4c9256
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001127.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01651
+---------------------------------MTEQYDGIVNPPIDSLLERVDSKYALV
+LFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIALREIETDLLESHEAVEATP
+EADLAAEDFGDFSLPGEDDPFATLEPSDAGQP--------VGDPEAIEEAAEAVRAEEGT
+SEDAPEA
+>KBS0714_MOLHKGIG_01237
+---------------------------------MTEQYEGIVNPPIDSLLERVDSKYALV
+LFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIALREIEAGLLESHEAVEATP
+EAELAAEDFGDFSLPGEDDPFATLESSDAHQP--------TGDPAAIEEAAETVRAEEGI
+SEDAPEA
+>KD337_NAFOICDF_01548
+MTPPPPPDGPPPAAPCVPTHGQKTTREQTLETYVTDQYEGIVNPPIDSLLERVDSKYALV
+LFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIAMREIESDMLVMAETAAVEP
+AIELAEEEFGDFALPGDDDPFVAEPTAEGVSPEEYGAPVTTGDDDAVE---DILSGADVA
+DEDA---
+>SA211_MHAAABBN_00956
+---------------------------------MTEQYEGIVNPPIDSLLERVDSKYALV
+LFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIALREIEADLLESHEAVEATP
+EADLAAEDFGDFSLPGEDDPFATLESSDAHQP--------MGDPAAIEEAAETVRAEEGT
+SEDATEA
+>TT9_LFPAFLNI_01195
+---------------------------------MTEQYEGIVNPPIDSLLERVDSKYALV
+LFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIALREIEADLLESHEAVEATP
+EADLAAEDFGDFSLPGEDDPFATLESSDAHQP--------MGDPAAIEEAAETVRAEEGT
+SEDATEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001129.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001129.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dc1d11b7f2443263fc19373cba56fb43bbc58090
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001129.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01653
+MTDAAQPSPARHADPYTGVGGGELRLFTSESVTEGHPDKICDQISDAILDAILAADPAAK
+VAVETLTTTGLVQVAGEVNTSAYVEIPRIVRETILDIGYDSSANGFDGAQCGVNISIGQQ
+SSDIFAGVTRSLEAREYGSADEVDEQGAGDQGIMFGYATDETPAYMPMPIYLAHRLSERL
+TAVRRQENTPMPYLLPDGKTQVTIGYAPGHVPTTVEAVVVSTQHHDWVGQEQLRKDVEEH
+VIRPVIERSGLDTSGMRVIINPGGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSG
+KDPSKVDRSAAYMLRWVAKNVVAAGLASRAEFQVAYAIGSARPVGLYVDTFGTAVVPEER
+IIQAVNEVFDLRPAAIVKELNLLRPIYRKTAANGHFGRDDADFTWERTDRVERLRAAAGL
+>KBS0714_MOLHKGIG_01235
+MTDAASLSPARHADPYSGVGGGELRLFTSESVTAGHPDKICDQISDAILDAILAADPSAK
+VAVETLTTTGLVQVAGEVNTSAYVEIPKIVRETILDIGYDSSANGFDGAQCGVNISIGQQ
+SSDIFAGVSRSLETREYGSADEVDEQGAGDQGIMFGYATDETPAYMPMPIYLAHRLSERL
+TAVRRAENTPMPYLLPDGKTQVTIGYAPGHVPTTVEAVVVSTQHHEWVTQEQLRADVEEH
+VIRPVIERSGLDTSGMRIIINPGGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSG
+KDPSKVDRSAAYMLRWVAKNVVAAGLASRAEFQVAYAIGSARPVGLYVDTFGTATVPEEK
+IIEAVNAVFDLRPAAIVKELNLLRPIYRRTAANGHFGRDDADFTWERTDRVEQLRAAAGL
+>KD337_NAFOICDF_01550
+MSDTPTPTPSAAAQPYRGVGGGDLRLFTSESVTSGHPDKMCDQISDAILDAILAADPSAK
+VAVETLSTTGLVQVAGEVNTSAYVEIPHIVRETILDIGYDSSANGFDGAQCGVNVSIGQQ
+SSDIFAGVSRSLEAREQGSADEVDEQGAGDQGIMFGYATNETPSYMPTPIYLAHRLSERL
+TAVRRQENTPMPYLLPDGKTQVTVGYDADHRPRTVETVVVSTQHHDVVTQEQLRADVAEH
+VIRPVIERSGLDVSNARFIINPGGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSG
+KDPSKVDRSAAYALRWVAKNVVAAGLAGRAEFQVAYAIGSARPVGLYVDTFGTNAVPEET
+IIAAVNEVFDLRPAAIVKSLNLLRPIYRKTAAHGHFGRDDADFTWERTDKVEELRRAAGV
+>SA211_MHAAABBN_00954
+MTDAASLSPARHADPYSGVGGGELRLFTSESVTAGHPDKICDQISDAILDAILAADPSAK
+VAVETLTTTGLVQVAGEVNTSAYVEIPRIVRETILDIGYDSSANGFDGAQCGVNISIGQQ
+SSDIFAGVSRSLEAREYGSADEVDEQGAGDQGIMFGYATDETPAYMPMPIYLAHRLSERL
+TAVRRAENTPMPYLLPDGKTQVTIGYAPGHVPTTVEAVVVSTQHHEWVTQEQLRADVEEH
+VIRPVIERSGLDTSGMRIIINPGGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSG
+KDPSKVDRSAAYMLRWVAKNVVAAGLASRAEFQVAYAIGSARPVGLYVDTFGTATVPEEK
+IIEAVNAVFDLRPAAIVKELNLLRPIYRRTAANGHFGRDDADFTWERTDRVEQLRAAAGL
+>TT9_LFPAFLNI_01193
+MTDAASLSPARHADPYSGVGGGELRLFTSESVTAGHPDKICDQISDAILDAILAADPSAK
+VAVETLTTTGLVQVAGEVNTSAYVEIPRIVRETILDIGYDSSANGFDGAQCGVNISIGQQ
+SSDIFAGVSRSLEAREYGSADEVDEQGAGDQGIMFGYATDETPAYMPMPIYLAHRLSERL
+TAVRRAENTPMPYLLPDGKTQVTIGYAPGHVPTTVEAVVVSTQHHEWVTQEQLRADVEKH
+VIRPVIERSGLDTSGMRIIINPGGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSG
+KDPSKVDRSAAYMLRWVAKNVVAAGLASRAEFQVAYAIGSARPVGLYVDTFGTATVPEEK
+IIEAVNAVFDLRPAAIVKELNLLRPIYRRTAANGHFGRDDADFTWERTDRVEQLRAAAGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001130.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001130.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f5fd2f770c28748386623655f37e56bd47835d46
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001130.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_01654
+------------MARVLLDSPVPHLDREFDYLIPVTLDERARPGSRVAVRFGGRPMTGWLVSREDEPATGAQLTELTAVL
+TSVPPLTEEVLASARAVARRQAGVVTDVLRAAVPPRVAQVEKAALAEDA-GAAADHPVALAVEEAPEGEPVGAGDGIAPT
+VWESLEGGRAFVAAVLAGDGPRAAAVVPSRLLEWDEAAAMAHLARAVAAGGGGVLLLVPDHRDLDRLCAALDDAVGEEAY
+ARIGSEDGNTPRYRAHLAALRGTRRIVAGTRAAAWAPVRDLRLTVLWDDGDDAWAEPRAPYFHAREVVLERTRRTGSALL
+FAGPSRSVPVQRLVESGWLLHLGPSRAAQREIGPRIVSTADAWETARDPFAQRARLPQAAWGAARAALLGERPGPVLVQV
+ARAGFIPALVCDRCRTPARCRRCAGPLGFRDARAARLGEVACRWCGTRERGFRCTECGAGALRAGARGVDRTAEELGRAF
+PRIPVHSSSAQHRLGTIPPGPSLVVATVGAEPVAEDGYAAALLLDGDAQLQREGLDVPGRVLARWLAAACLVRPAADGGV
+VVVTADAGEAVNALVRRDPDGFAAHQVAERRELHLPPAGRLAEVTGEASAVREYLDLVEAARRER----PEEDVHEDPHS
+APLDGGPARLPWIGPVPDAADETRSRALLLFPYAAADATVAALRAARSAASARRETSPVRVRLDPAGVL
+>KBS0714_MOLHKGIG_01234
+---------------------MPHLDREFDYLVPVALDARAVPGSRVSVRFGGRAMTGWLVSREQEPATGAQLTELTGVL
+TVIPPLTEEVLATARAVARRQAGVVTDVLRAAVPPRVAQVEKAALAEDA-EAAADHPVTLTGTDAERPEPPAAEEGLVPT
+VWESLEGGTAFVSAVLAGDAARAAAVVPSRLFEWDEAGALAALARTVAASDGGVLLLVPDHRDLDRLCAALDEHVGEDAY
+ARIGSEDGNTPRYRAHLAALRGTRRIVAGTRAAVWSPVRDLRLVVLWDDGDDAWAEPRAPYFHAREVVLERARATGAALL
+FAGPSRSVPVQRLVESGWLLHLGPSRAAQRELGPRVVSTADAWETARDPFAQRARLPQAAWAAARAALLGPRPGPVLVQV
+ARAGFIPALVCERCRTPARCRVCAGPLGFRDARAARHGEVACRWCGTRERGFRCTECGGTTLRAGARGVDRTAEELGRAF
+PRVPVHASSAQHMLGSVPPGPSLVVATVGAEPVTPDGYAAALLLDGDSQLQREGLDVPGRVLARWLAAACLVRPASDGGV
+VVVTADASEAVNALVRRDPDGFAARQVAERRELHLPPAGRLAEVSGDAAAVAEYLELVEAARRER----PDEDIHEDPHS
+APLDGGPARLPWIGPVPDPADETRSRALLIFPYAAAEATVGALRAARSAASARRETAPVRVRLDPAGVL
+>KD337_NAFOICDF_01551
+------------MARVLLDSPVPHLDREFDYLVPPALDERAVPGSRVSVRFGGRETTGWLVERVAAPATHARLTELAGVL
+TAVPPLTEHVLAVARAVAARQAGVVSDVLRSAVPPRVVSVEKEVLAELASGPEVDHPVQGVVAD------PHAR-----L
+VWEELTGGTAFVASAVAGDPVRAAAVVPSRVGDWDESSALAALATAVSRAGGGVLLLVPDHRDLDRLSAALAREVGEDGF
+VRVGSEDGNTPRYRAHLRALTGLARVVAGTRAAAWAPVQDLRLVVVWDDGDDAHAEPRAPYFHVREVALERARQSGSALL
+FAGPSRSVPVQRLVEHGWLLEVSADRASQRAASPRIVASADSWESARDPFARRARLPHAAWAAAGEALSGPTPGPVLVQV
+ARAGFIPAVVCGRCRTPARCRVCAGPLAFRDRRSAERGELACRWCGTRERDFHCAECGFTGLRAGVRGVDRTAEELGRAF
+PQVPVHSSSADHRLGEVGEGPALVVATVGAEPHARGGYAAALLLDGDAQLQREGLDVPVRVLTRWLAAASLVRPAAEGGT
+VVVTAEHDAAVGALVRRDPQGFAGHLLAERRELHLPPAGRLAEVTGEAGAVAEYLALVEAARRERRRVGPDADPSLDLDV
+EARPGDATPLPWIGPVPDVADESRSRALLLFPWAASAATVDALRVARSAASARRERSAVRVRLDPPGVL
+>SA211_MHAAABBN_00953
+---------------------MPHLDREFDYLVPVALDDRAVPGSRVSVRFGGRAMTGWLVSREQEPATGAQLTELTGVL
+TVIPPLTEEVLATARAVARRQAGVVTDVLRAAVPPRVAQVEKAALAEDA-ETAADHPVTLTGTDAERPEPPAAEEGLVPT
+VWESLEGGTAFVSAVLAGDAARAAAVVPSRLFEWDEAGALAALARTVAASDGGVLLLVPDHRDLDRLCAALDEHVGEDAY
+ARIGSEDGNTPRYRAHLAALRGTRRIVAGTRAAVWSPVRDLRLVVLWDDGDDAWAEPRAPYFHAREVVLERARATGAALL
+FAGPSRSVPVQRLVESGWLLHLGPSRATQRELGPRVVSTADAWETARDPFAQRARLPQAAWAAARAALLGPRPGPVLVQV
+ARAGFIPALVCERCRTPARCRVCAGPLGFRDARAARHGEVACRWCGTRERGFRCTECGGTTLRAGARGVDRTAEELGRAF
+PRVPVHASSAQHMLGSVPPGPSLVVATVGAEPVTPDGYAAALLLDGDSQLQREGLDVPGRVLARWLAAACLVRPASDGGV
+VVVTADAGEAVNALVRRDPDGFAARQVAERRELHLPPAGRLAEVTGEAAAVAEYLELVEAARRER----PDEDVHEDPHS
+APLDGGPARLPWIGPVPDPADEIRSRALLIFPYAAAEATVGALRAARSAASARRETAPVRVRLDPAGVL
+>TT9_LFPAFLNI_01192
+MPERAEGWPERPIARVLLDSPVPHLDREFDYLVPVALDARAVPGSRVSVRFGGRAMTGWLVSREQEPATGAQLTELTGVL
+TAIPPLTEEVLATARAVARRQAGVVTDVLRAAVPPRVAQVEKAALAEDA-EAAADHPVTLTGTDAERPEPPAAEEGLVPT
+VWESLEGGTAFVSAVLAGDAARAAALVPSRLFEWDEAGALAALARTVAASGGGVLLLVPDHRDLDRLCAALDEHVGEDAY
+ARIGSEDGNTPRYRVHLAALRGTRRIVAGTRAAVWSPVRDLRLVVLWDDGDDAWAEPRAPYFHAREVVLERARATGAALL
+FAGPSRSVPVQRLVESGWLLHLGPSRAAQRELGPRVVSTADAWETARDPFARRARLPQAAWAAARAALLGPRPGPVLVQV
+ARAGFIPALVCERCRTPARCRVCAGPLGFRDARAARHGEVACRWCGTRERGFRCTECGGTTLRAGARGVDRTAEELGRAF
+PRVPVHASSAQHMLGSVPPGPSLVVATVGAEPVTPDGYAAALLLDGDSQLQREGLDVPGRVLARWLAAACLVRPASDGGV
+VVVTADAGEAVNALVRRDPDGFAARQVAERRELHLPPAGRLAEVTGEAPAVAEYLELVEAARRER----PDEDVHEDPHS
+APLDGGPARLPWIGPVPDPADETRSRALLIFPYAAAEATVGALRAARSAASARRETAPVRVRLDPAGVL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001134.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001134.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8b5c18e3fe8ba5450b2f58df8c849d906837ba2e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001134.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01658
+MATIEQWRDDALVRLRSRRSQLVGRARYGLKPPRRDRTAVVTDSAAALPAAALGHSLAAG
+IRQVPLPVMVGDQIHAEGTDDLALELPLALAAGTAVRTSRPSPGAFRSVYAQLAREGYAR
+ILSVHLSGELSGTAEAARLAAVDAERPVTVVDSRTVGFALGMAVVDAAVDAGVGMTVARI
+RERLEATVDSSHVLFTVPSLEQLRRGGRISGLASLIGTLLHVRPVLAVDDGAISLVDRPR
+SAARAVDRLVELATERAGDVPVRIAVHEYGDPETAAALAERLTPVSTTPVPVVELPAVLA
+AHLGLGALGVVVCPLESPTGGSGD-----
+>KBS0714_MOLHKGIG_01230
+MASIEQWRDDALVRLRSRRSQLAGRARYGLRPPRRDRTAVVTDSAAALPGAVLGHGLAAG
+IRQVALPVMVGEQIHTEGTDELALELPLALAAGTPVRTSRPSPGAFRTVYAELARAGYAR
+ILSVHLSGELSGTVEAARLAAADAERPVTVVDSRTVGFALGMAVVDAAVDAGVGMPVARI
+RERLEATVDSSHVLFTVPSLEQLRRGGRISGLASLLGTLLQVRPVMAVDDGAIGLVDRPR
+SAARAVDRLVELAVERAGEDPVRIAVHEYGDPETAMQLAERLQPISTTPVPVVELPAVLA
+AHLGLGALGVVICPLESPTGGSGD-----
+>KD337_NAFOICDF_01555
+MASTSQWLEDAVERLRARRGQLVGRARYGLKPARRDRTGIVTDSAAALPVEVFAHPFAAG
+IRQVALPVMVGEQIHVEGDADLDLELQLALAAGTPVRTSRPAPGAFRAAYADLAQAGCAR
+ILSVHLSGELSGTVEAARLAAADAPVPVVVLDSRTAGLALGHAVLDAAVEAGFGRPLDQV
+AAIAQACADQSSVLFTVPHLEQLRRGGRIGAVPSLLGALLQVRPVLGLQDGSVHLVDRAR
+TSPRALERMVDLARERAAGGPARIAVHEYGDPAGATALAERLQSASATPVPVVPLPAVLA
+AHLGLGTLAVVLSPLEPVPSTSSSPAQAN
+>SA211_MHAAABBN_00949
+MASIEQWRDDALVRLRSRRSQLAGRARYGLRPPRRDRTAVVTDSAAALPGAVLGHGLAAG
+IRQVALPVMVGEQIHTEGTDELALELPLALAAGTPVRTSRPSPGAFRTAYAELARAGYAR
+ILSVHLSGELSGTVEAARLAAAEAERPVTVVDSRTVGFALGMAVVDAAVDAGVGMPVARI
+RERLEATVDSSHVLFTVPSLEQLRRGGRISGLASLLGTLLQVRPVMAVDDGAIGLVDRPR
+SAARAVDRLVELATERAGEDPVRIAVHEYGDPETAVQLAERLQPVSTTPVPVVELPAVLA
+AHLGLGALGVVICPLESPTGGSGD-----
+>TT9_LFPAFLNI_01188
+MASIEQWRDDALVRLRSRRSQLAGRARYGLRPPRRDRTAVVTDSAAALPGAVLGHGLAAG
+IRQVALPVMVGEQIHTEGTDELALELPLALAAGTPVRTSRPSPGAFRTAYAELARAGYAR
+ILSVHLSGELSGTVEAARLAAAEAERPVTVVDSRTVGFALGMAVVDAAVDAGVGMPVARI
+RERLEATVDSSHVLFTVPSLEQLRRGGRISGLASLLGTLLQVRPVMAVDDGAIGLVDRPR
+SAARAVDRLVELATERAGEDPVRIAVHEYGDPETAVQLAERLQPVSTTPVPVVELPAVLA
+AHLGLGALGVVICPLESPTGGSGD-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001135.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001135.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8a976b93478956d311fed18b664fb21236f5f945
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001135.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01659
+M-------SHPH--RLAPDAALSDDPRRGRPA--SDLVPVPPALAARG-PSAWERVPPRG
+RVLRWRPALLAVTVLLVAAAAWWAVAWLTSPAPPSPAPAASAVEARVEPETEDGPDAADA
+APPSDG----AGPAAEPSGGSGPV----ATLLRVHVVGEVERPGVVSLAPGARVADAVRA
+AGGATREARTERINLAAPLADGRQVLVPSARTPEEDLARVAGGQDGPGGPEGGAAGTAPD
+AAASAPAGPARAGGSGGAGA-GPVDLNAADAVALQTLPGVGPATAEKIIAHRETVGPFTG
+LQDLDAVPGVGPAALERLRDRVTW
+>KBS0714_MOLHKGIG_01229
+---------------MSPSHRLCDDPPAFAPD--PAAVPDVDTAGPHA-ASRWERTPPRG
+PVLRWRPALLAVTVLLVAAAAWWAVAWLTTPAPPAAVPAAAAGAGI--PQT-GAPSAAST
+AAGTDARTPEAGPSGEASGSAG------STPLRVHVVGEVARPGVVSLAPGSRVADAVRA
+AGGPTRHARAERINLAAPLDDGQQVLVPSAHTPQDALDRVAGAAQAQPTPTTGGAGATGE
+--------------PGGAEPRGTVDLNTADAAGLQTLPGVGPATAEKIIAHRETVGPFTG
+LQDLDAVPGIGPATLDRLRDLVSW
+>KD337_NAFOICDF_01556
+M--------------------------------------DTKTLTPAVDEPDWEDPPPRG
+PLLRWRTAGAGLTLVAILGLTWWLVAWLTAPAPPDAVPAGAVGSAS------AAGSAAHE
+ASAAPLRATAATPEGQDGGGRSAAAANPSGRVRVHVVGQVRRPGVVELPAGARVADAVAA
+AGGARELARTDRINLAAPVVDGQQVVVPDAQTAVEPAAVAGEAPDGGPTPRTGSGASAAD
+-------------GSGG-GP-ATVDLNTADLAALQTLPGVGPATAEKIIAQRESVGPFSG
+LQDLDAVPGIGPATLDRLKDHVTW
+>SA211_MHAAABBN_00948
+MRDAPDSATGPQTARMSPSHRLCDDPPAFAPDPAPAAAPDVDTAGPHA-ASRWERTPPRG
+PVLRWRPALLAVTVLLVAATAWWAVAWLTTPAPPAAIPAAAAGAGI--PQT-DAPSTAPS
+AAGTDARTSEAGPSGEASGPAG------SGPLRVHVVGEVARPGVVSLAPGSRVADAVGA
+AGGPTRHARAERINLAAPLDDGQQVLVPSARTPQDALDRVAGAAQAQPTPTTGRAGGGGE
+--------------PGGAESGDTVDLNTADATELQTLPGVGPATAEKIIAHRETVGPFTG
+LQDLDAVPGIGPATLDRLRDHVSW
+>TT9_LFPAFLNI_01187
+---------------MSPSHRLCDDPPAFAPDPAPAAAPDVDTAGPHA-ASRWERTPPRG
+PVLRWRPALLAVTVLLVAATAWWAVAWLTTPAPPAAIPAAAAGAGI--PQT-DAPSTAPS
+AAGTDARTSEAGPSGEASGPAG------SGPLRVHVVGEVARPGVVSLAPGSRVADAVGA
+AGGPTRHARAERINLAAPLDDGQQVLVPSARTPQDALDRVAGAAQAQPTPTTGRAGGGGE
+--------------PGGAESGDTVDLNTADATELQTLPGVGPATAEKIIAHRETVGPFTG
+LQDLDAVPGIGPATLDRLRDHVSW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001138.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001138.fa
new file mode 100644
index 0000000000000000000000000000000000000000..990289d5bf330a1bdd0ede1039c8b91476fc0fd5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001138.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01662
+MANIKSQKKRILTNEKARQRNVAVKSELKTAIRAVDKAVAAGEAEAAAAALRTASRKLDK
+AASKGVIHKNQAANRKSGIAARVKALLG
+>KBS0714_MOLHKGIG_01226
+MANIKSQKKRILTNEKARQRNVAVKSELKTAIRAVDKAVAAGEPEAAAAALRTASRKLDK
+AASKGVIHKNQAANRKSGIAARVKALLG
+>KD337_NAFOICDF_01559
+MANIKSQKKRILTNEKARQRNIAVKSELKTAIRAVDKAVAAGEQDAAVEALRTASRKLDK
+AASKGVIHKNQAANRKSGIAARVKALLG
+>SA211_MHAAABBN_00945
+MANIKSQKKRILTNEKARQRNVAVKSELKTAIRAVDKAVAAGEAEAAAAALRTASRKLDK
+AASKGVIHKNQAANRKSGIAARVKALLG
+>TT9_LFPAFLNI_01184
+MANIKSQKKRILTNEKARQRNVAVKSELKTAIRAVDKAVAAGEAEAAAAALRTASRKLDK
+AASKGVIHKNQAANRKSGIAARVKALLG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001139.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001139.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2d32464067405d1a910acd0eaa145333237d7ae6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001139.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01663
+MAFDLNRALALGRRAIRLIGSLRDDDARR---SWTGDAAGRGSGAAPFPGPPGPAGRAWD
+PKEPTDSWPFPDRGHDGRPRGGQDRTRPASGATDPQGRALLADFTGMGRVEYAPVPGPAA
+GPGEVVWTWVPYEEMDGRGKDRPVLLVGRDGDLLLGLMLTSRDRNNARVRDEDYVDVGSG
+PWDRAGRPSEAKLDRVLRVDPAAVRREGGVLDPAAFERVGDALARAQGWRR
+>KBS0714_MOLHKGIG_01225
+MAFDLHRALSLGRRTARLIGALRDDARPRRAASEAGRRAGDRSGPSPFPGPPGPPGPAWD
+PTEPTDSWPMPGPGQERRPR-RQDAGRHVS----------LPDFTGTVRVEYAPVPGPTA
+GPGEVVWTWVPYEEMDGRGKDRPVLLIGRDGAHLLGLMLTSRDRNNALARDEDYVDVGAG
+AWDRSGRASEVKLDRVVRVDPAAVRREGGVLDRAAFDRVTAALARARRRGR
+>KD337_NAFOICDF_01560
+MAFDFQRALTLGRTALRLVEQVRS-----------MSGAGTTRGAAP-SSPASRAGR---
+-----------------RRRADAEETRGARSGGAGSDHALLPDFTGRARVEYAPVPGATP
+DPGEVVWTWVPFEEMDGRGKDRPVLLVGRDGDLLLALMLTSKDHTNAARRDADYVDVGTG
+PWDRGGRASEAKLDRILRVDPAAVRREGGVLERSRFDAVAEALARAQGWDR
+>SA211_MHAAABBN_00944
+MAFDLHRALSLGRRTARLIGALRDDARPRRAASEAGRRAGERSGPSPFPGPPGPPGPAWD
+PTEPTDSWPMPGPGQERRPR-RQDTDRHVS----------LPDFTGTVRVEYAPAPGPTA
+GPGEVVWTWVPYEEMDGRGKDRPVLLIGRDGALLLGLMLTSRDRNNALTRDEDYVDVGAG
+AWDRSGRASEVKLDRVVRVDPAAVRREGGVLDRAAFDRVTAALARARRRVR
+>TT9_LFPAFLNI_01183
+MAFDLHRALSLGRRTARLIGALRDDARPRRAASEAGRRAGDRSGPSPFPGPPGPPGPAWD
+PTEPTDSWPMPGPGQERRPR-RQDTGRHAS----------LPDFTGTVRVEYAPVPGPTA
+GPGEVVWTWVPYEEMDGRGKDRPVLLIGRDGAHLLGLMLTSRDRNNARARDEDYVDVGAG
+AWDRSGRASEAKLDRVVRVDPAAVRREGGVLDRAAFDRVTAALARARRRGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001144.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001144.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2d459749da86a6ab1b39bad9e889edb8c15bbfac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001144.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01669
+MTDHYATLGVSRDASTEEIRRAYRKLARTHHPDVNPDPESAEQFKRISHAYEVLSDEGRR
+RAYDTTGNENGQS-GFPGGFGGGGGFGGFADIFETFMNAAGQGGRG-GPASRARRGQDAL
+VTAPIDLEDAVFGGEQTITLDTAVRCKRCEGSCCEPGTEPETCQTCQGHGMIQRPMRSLL
+GTVMATEACPACQGFGTVIPDPCHECAGQGRVRTRTPLTLRIPAGVDDGTRIHLAGRGEA
+GPGGGPNGDLYVEIAVRPHETFRREGDHLATTVTVPMAAAALGTTVTLATLDGEQTVRLE
+PGVQSGHVETLAGLGVGRLRGQGRGDLKVDVVVTTPTDLDDEQRELLERLAELRGEEVVH
+GT-PPARGMFARLRENLRNL
+>KBS0714_MOLHKGIG_01219
+MTDHYETLGVSRDASTEEIRRAYRKLARTHHPDVNPDPEAAEQFKRISHAYEVLSDEGRR
+RAYDTTGNENGQA-GFPGGFGGAGGFGGFADIFETFMNAAGQGGRG-GPASRARRGQDAL
+VTARIDLRDAVFGGEQTIELDTAVRCDRCEGSCCEPGTQPETCQTCHGHGMIQRPVRSLL
+GTVMATEACPACQGFGTVIPTPCHECDGQGRVRTRTPLTLRIPAGVDDGTRIHLAGRGEA
+GPGGGPNGDLYVEIAVRPDETFRREGDHLATTVTVPMAAAALGTTVTLDTLDGKQSLSLD
+PGVQSGHVEVLHGLGVGRLRGQGRGDLKVDVVVTTPTDLDDEQRQLLERLAEVRGEEVVH
+GA-PQAKGMFARLRENLRNL
+>KD337_NAFOICDF_01566
+MADHYATLGVSRDASAEEIKRAYRKLARQHHPDVNPSEEAAEEFKRISHAYEVLSDEDKR
+RVYDQTGNENGTAGGFGGGGFGGAGFGGFADIFETFMNAAGTPGGGRGPMPRARRGQDAL
+VTARIELRDAVFGGEATLQLDTAVTCERCSGTCCEPGTHPETCSTCQGQGMTQRPVRSML
+GTIMAAETCPVCRGFGTVIPHPCTECSGQGRVRVQQPLTIRIPAGVDDGTRIHLAGRGEA
+GPGGGPNGDLYVEVQVRPDEVFRREGDHLATTVTVPMAAAALGTSVTLETLDGPQEVDIE
+PGTQSGHVETLRGLGVGRLRGAGRGDLKVDVVVTTPTDVTDEQRALLEQLAGLRGEEVVH
+GAPPQSKGMFARLRENLKNL
+>SA211_MHAAABBN_00938
+MTDHYETLGVSRDASTEEIRRAYRKLARTHHPDVNPDPEAAEQFKRISHAYEVLSDEGRR
+RAYDTTGNENGQA-GFPGGFGGAGGFGGFADIFETFMNAAGQGGRG-GPASRARRGQDAL
+VTARIDLRDAVFGGEQTIELDTAVRCDRCEGSCCEPGTQPETCQTCHGHGMIQRPVRSLL
+GTVMATEACPACQGFGTVIPTPCHECDGQGRVRTRTPLTLRIPAGVDDGTRIHLAGRGEA
+GPGGGPNGDLYVEIAVRPDETFRREGDHLATTVTVPMAAAALGTTVTLDTLDGKQSLSLD
+PGVQSGHVEVLHGLGVGRLRGQGRGDLKVDVVVTTPTDLDDEQRQLLERLAEVRGEEVVH
+GA-PQAKGMFARLRENLRNL
+>TT9_LFPAFLNI_01177
+MTDHYETLGVSRDASTEEIRRAYRKLARTHHPDVNPGPEAAEQFKRISHAYEVLSDEGRR
+RAYDTTGNENGQA-GFPGGFGGAGGFGGFADIFETFMNAAGQGGRG-GPASRARRGQDAL
+VTARIDLRDAVFGGEQTIELDTAVRCDRCEGSCCEPGTQPETCQTCHGHGMIQRPVRSLL
+GTVMATEACPACQGFGTVIPTPCHECDGQGRVRTRTPLTLRIPAGVDDGTRIHLAGRGEA
+GPGGGPNGDLYVEIAVRPDETFRREGDHLATTVTVPMAAAALGTTVTLDTLDGKQSLSLD
+PGVQSGHVEVLHGLGVGRLRGQGRGDLKVDVVVTTPTDLDDEQRQLLERLAEVRGEEVVH
+GA-PQAKGMFARLRENLRNL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001148.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001148.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8b1157dc39c12be5b86c514814a12cf35a715735
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001148.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01673
+MLTPAVLFALFLVFLALVWTLSLAESAFTYLSRRDAEDIVRRRPGSRVLDVTAERDSHLG
+ALRVWRFVAEALSAVCLTAAADAVVDNTWFAVLIAAAVLVGVAALLGVWSPRPFGSRNEA
+AVARRLGGLVWGLRRALGPLADRLGRDRRRREDELEEEDDFQERHLREVVARAHDADVLA
+DSEAELIQSVFSMNDTIVRSVMVPRTDVVTIDADHTLGQAMALFLRSGNSRIPVIGEDAD
+DIRGMLHLKDVTRALHQDGAAQSGPVTAAMRDVRFVPESKSVAALLQELQRESTHVAVVV
+DEYGGTAGLVTLEDLIEEIVGEIYDEDDLPDRAEVEMIEPGVYSVDARMGLHHFREEFEL
+PEEEDEDDDVDTVGGLLAKELGRVPIQGSRVVVQGLELLADTLEPRRNRVARLRVSETPD
+RPARLRRRDEEPHGSSAAETAA
+>KBS0714_MOLHKGIG_01215
+MLTPAVLFALFLVFLGLTWTLSLAESAFSYLSRRDAEDIVRERPGSKVLEIARERESHLG
+ALRVWRFVAEALSAVCLTAAADAVVDDTWLAVAIAAVVLVGVAALLGVWSPRPIGSRNEA
+AVARRLGGLVWVLRRALGPLAARLDRDRRRREVEPEDEDDFQERHLREFVARAHDADVLA
+DSEAELIQSVFSMNDTIVRSVMVPRTDVVTIDADHTLGQAMALFLRSGNSRIPVIGEDAD
+DIRGMLHLKDVTRALHHDGAATDTPVTEVMRDVRFVPESKSVATLLQELQRESTHVAVVV
+DEYGGTAGLVTLEDLIEEIVGEIYDEDDQPDRPEVEFVAPGVYSVDARMGIHDFREEFEL
+P-EEDEDDDVDTVGGLLAKELGRVPIQGSRVVVQGIELVADTLEPRRNRVARLRVSETPD
+RPVRLRRREEQAHGAAPADPVA
+>KD337_NAFOICDF_01570
+MATAVSLVLLFLACLACTWVLALAESAFTYLPRKDAEDVARTRPGSRILDVTADLDGHLG
+ALRVWRFLSEAFAAMFLTAGLHALTDSVWAALAVTAVLLVGTAAVLGVWSPRPIGSRNEA
+AVAARTAGLVHGLKQALGPVGDRLGRDRRRTEAEAADEDDFHERHLREVVARAHDAEVLE
+DSEAELIASVFSMGDTLVRSVMVPRTDVVTIDADHTLGQALDLFLRSGCSRVPVIGEDSD
+DVRGMLYLKDAVRALHHEGHASQDAVTAVMREVRFVPESKPVSVLLEELQRESTHVAIVV
+DEYGGTAGLVTLEDLIEEIVGEIWDEDDRPDRPEIEELAPGVYSVDARMGIGDFREEFEL
+PEDEDEDDDVDTVGGLLAKELGRVPIRGSRVVVHGLELTADTLEPRRNRVARLKVVETED
+RPARLRRQHD------PTDP-D
+>SA211_MHAAABBN_00934
+MLTPAVLFALFLVFLGLTWTLSLAESAFSYLSRRDAEDIVREQPGSKVLEIARERESHLG
+ALRVWRFVAEALSAVCLTAAADAVVDDTWLAVAIAAVVLVGVAALLGVWSPRPIGSRNEA
+AVARRLGGLVWVLRRALGPLAARLDRDRRRREVEPEDEDDFQERHLREFVARAHDADVLA
+DSEAELIQSVFSMNDTIVRSVMVPRTDVVTIDADHTLGQAMALFLRSGNSRIPVIGDDAD
+DIRGMLHLKDVTRALHHDGAATDTPVTEVMRDVRFVPESKSVATLLQELQRESTHVAVVV
+DEYGGTAGLVTLEDLIEEIVGEIYDEDDRPDRPEVEFVAPGVYSVDARMGIHDFREEFEL
+P-EEDEDDDVDTVGGLLAKELGRVPIQGSRVVVQGIELVADTLEPRRNRVARLRVSETPD
+RPVRLRRREEQAHGAEPADPVA
+>TT9_LFPAFLNI_01172
+MLTPAVLFALFLVFLGLTWTLSLAESAFSYLSRRDAEDIVRERPGSKVLEIARERESHLG
+ALRVWRFVAEALSAVCLTAAADAVVDDTWLAVAIAAVVLVGVAALLGVWSPRPIGSRNEA
+AVARRLGGLVWVLRRALGPLAARLDRDRRRREVEPEDEDDFQERHLREFVARAHDADVLA
+DSEAELIQSVFSMNDTIVRSVMVPRTDVVTIDADHTLGQAMALFLRSGNSRIPVIGEDAD
+DIRGMLHLKDVTRALHHDGAATDTPVTEVMRDVRFVPESKSVATLLQELQRESTHVAVVV
+DEYGGTAGLVTLEDLIEEIVGEIYDEDDQPDRPEVEFVAPGVYSVDARMGIHDFREEFEL
+P-EEDEDDDVDTVGGLLAKELGRVPIQGSRVVVQGIELVADTLEPRRNRVARLRVSETPD
+RPVRLRRREEQAHGAAPADPVA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001153.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001153.fa
new file mode 100644
index 0000000000000000000000000000000000000000..222d86691580cff16c58dabeef69285cb3a46e62
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001153.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01678
+MQLPDPKAAVDGVLTSRAPRLYPPFFRAVFGGMDAEQAHHRGFDAIRLAERTGASAALRA
+AFRPDPLLARTVMGLRFPTPFGLAAGFDKEGRGTAALADLGFGHIEVGTITAQAQPGNPQ
+PRLFRLVEDRALVNRMGFNNDGAAAVAPRLARTRAVLERRFGAVRPVLGVNIGKTKVVAL
+EDAAEDYRASTRLLTPHADYLTVNVSSPNTPGLRQLQEIDALEPILTAVREEADRVVTGR
+RVPLTVKIAPDLTDEDVRAVAALAERLGLDGVIATNTTISREGLATPRADVDALGAGGLS
+GAPLKERSTEVLRVLRAALPVGTAVISVGGVTDADDVQARLDAGADLVQGYTAFLYEGPF
+WAGRISAGLACALRG-
+>KBS0714_MOLHKGIG_01209
+MQLPDPKSAVDGLLTSRAPRLYPPFFRAVFGGMDAEQAHHRGFDAIRLVERTGASAALRA
+AFRPDPLLARTVMGLRFPTPFGLAAGFDKDGRGTAALADLGFGHIEVGTITAQPQPGNPQ
+PRLFRLVDDRALVNRMGFNNDGAAAVAPRLARTRQTLERRFGPTRPVLGVNIGKTKVVPL
+EDAADDYRASTRLLAPHADYLTVNVSSPNTPGLRQLQEIDALEPILTAVREEADRAVPGR
+RVPLTVKIAPDLADDDVRAVGALAERLGLDGVIATNTTVSREGLRTPRADVDALGAGGLS
+GAPLQERSMRVLQVLRAALPTGTAVVSVGGVTDADDVQARLDAGADLAQGYTAFLYEGPF
+WAGRITAGLARSLRG-
+>KD337_NAFOICDF_01576
+MQLPDPRFRVQSVLRSSAPRIYPPFFRAVFAGMDPERAHHVGFAGIRAAEASGASRALRS
+TMAPDLGLARTVMGLRFPSPFGLAAGFDKTGVGTTALAELGFGHIEVGTITAQAQPGNPA
+PRLFRLPEDRALINRMGFNNDGAAAVAPRLAATRRTLEERFGAVRPVLGVNIGKTKVVPL
+DGAVEDYRASARLLAPHADYLTVNVSSPNTPGLRQLQEISSLEPILAAVREEADRAVPDR
+RVPLTVKIAPDLADEDVRAVAELAGRIGLDGVIATNTTIGRGGLSTPASEVEAMGAGGLS
+GAPLAARSLEVLRTLRAALPAGVALIAVGGVTDGDDVLQRLDAGADLVQGYTAFLYEGPF
+WAGRINAGLDAAQRAR
+>SA211_MHAAABBN_00928
+MQLPDPKSAVDGILTSRAPRLYPPFFRAVFGGMDAERAHHRGFDAIRLAERTGASAALRA
+AFRPDPMLARTVMGLRFPTPFGLAAGFDKDGRGTAALADLGFGHIEVGTITAQPQPGNPQ
+PRLFRLVDDRALVNRMGFNNDGAAAVAPRLARTRQTLERRFGPARPVLGVNIGKTKVVPL
+EDAADDYRASTRLLAPHADYLTVNVSSPNTPGLRQLQEIDALEPILTAVREEADRAVPGR
+RVPLTVKIAPDLADADVRAVGALAERLGLDGVIATNTTVSREGLRTPRADVDALGAGGLS
+GAPLQERSMRVLQVLRAALPTGTAVVSVGGVTDADDVQARLDAGADLVQGYTAFLYEGPF
+WAGRTTAGLARSLRG-
+>TT9_LFPAFLNI_01166
+MQLPDPKSAVDGLLTSRAPRLYPPFFRAVFGGMDAEQAHHRGFDAIWLVERTGASAALRA
+AFRPDPLLARTVMGLRFPTPFGLAAGFDKDGRGTAALADLGFGHIEVGTITAQPQPGNPQ
+PRLFRLVDDRALVNRMGFNNDGAAAVAPRLARTRQTLERRFGPARPVLGVNIGKTKVVPL
+EDAADDYRASTRLLAPHADYLTVNVSSPNTPGLRQLQEIDALEPILTAVREEADRAVPDR
+RVPLTVKIAPDLADDDVRAVGALAERLGLDGVIATNTTVSREGLRTPRADVDALGAGGLS
+GAPLQERSMRVLEVLRAALPTGTAVVSVGGVTDADDVQARLDAGADLVQGYTAFLYEGPF
+WAGRITAGLARSLRG-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001155.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001155.fa
new file mode 100644
index 0000000000000000000000000000000000000000..df68b9fa18d4a3c36f4401561f987fbed7071d7a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001155.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01680
+MTETTPPVRDDAA----LVAAVRDAVDARFPQTLQTLTDLVAIPGIAWDSADRAQLERSS
+EAVAALLRQAGLQGVEIVTETREDGRPGGPAVIGEKPGASDKPTVLLYAHHDVQPIGDEA
+LWDTEPLVATEKGGRLYGRGAADDKAGIMVHLAALAALKDVLPDAGVGVRVFIEGEEEAG
+SPTFRTFLENHRARLEADAIVVADSSNWAVGEPALTTSLRGLVDGTVTVRVLDHAVHSGM
+FGGPVLDAVVLLSRLIATLHDADGAVAVPGLEPRRSASLDYPEDVFRADAGVLDSVTLAG
+RGPVADRLWNAPALSVIGIDVPSVAESSNTIQPQARAKFSLRLGPGMDPAEAFEALKAHL
+EAQSAAVLGAEITVEAGEFGQPFDTDTSDPLAAAMMGALGDAWGVAPKEAGMGGSIPFTA
+DLAEVFPDATILITGVEDPDSRAHSANESLHIEDFRRAVVAEALWFARLAG
+>KBS0714_MOLHKGIG_01207
+MTDITSRAPQDAA----LVSAVREAVEARFPTTLQTLTDLVAIPGIAWDSADRAQLERSA
+EAVAGLLREAGLQDVEIVSEIRDDGRPGGPAVIGEKPGTSDKPTVLFYAHHDVQPIGDED
+LWDTPPLVATERGGRLYGRGAADDKAGIMVHLAALAALRDVLPDAGVGVRVFIEGEEEAG
+SPTFRTFLEKHRARLDADAIVVADSSNWAVGEPALTTSLRGLVDGTVTVRVLDHAVHSGM
+FGGPVLDAVVLLSRLIATLHDADGAVAVPGLEPRQTAGLDYPEDVFRADAGVLDGVTLAG
+RGPVADRLWNAPALSIIGIDAPSVAESSNTIQPAARAKFSMRLGPGMEPAEAFEALRTHL
+EAQSAAVLGAEITVTAGEFGQPFTTDTSAPAAAAMMAALEDAWGVEPRAIGMGGSIPFTA
+DLAEVFPEATLLITGVEDPDTRAHSANESLHIDDFQRAVVAEALWLARLSA
+>KD337_NAFOICDF_01578
+MTQSTQNTPVGAAPDPELVSAIRAAVDRRFPETLQSLKDLVSIPGIAWDSMDREPLERSA
+AAVADLLRTAGLEGVETAVEERADGRPGGPAVIGGRPAVGDKPTVLLYAHHDVQPLGEEG
+LWDTPPLVATERDGRLYGRGAADDKAGIMVHLAALAALDEVCPDAGVGVRVFIEGEEEAG
+SPTFRPFLERHRDRLAADAIVVADSSNWAVGEPALTTSLRGVVSATVTVRALDHAVHSGM
+FGGPVLDAVVLMSRLIATLHDADGAVAVPGLEPRHHADVDYPEDAFRADSGILPGTRLAG
+RGALADRLWNGPALSVIGLDAPSVDTSSNTIQPAARAKISLRLGPGMDPAASLDALRAHL
+EAQSDAVLGAEITVEPGELGQPFSTDTSAPAAAAMMGALGAAFATPARETGLGGSIPFTA
+DLKELFPEATILITGVEDPDSRAHSANESLHLEDFRRAIVAEALWLAAMGA
+>SA211_MHAAABBN_00926
+MTDITSRAPQDAA----LVSAVREAVEARFPTTLQTLTDLVAIPGIAWDSADRTQLERSA
+EAVAGLLRAAGLQHVEIVTETRDDGRPGGPAVIGEKPGASDKPTVLLYAHHDVQPIGDED
+LWDTPPLVATERGGRLYGRGAADDKAGIMVHLAALAALRDVLPDAGVGVRVFIEGEEEAG
+SPTFRTFLEKHRARLDADAIVVADSSNWAVGEPALTTSLRGLVDGTVTVRVLDHAVHSGM
+FGGPVLDAVVLLSRLIATLHDADGAVAVPGLEPRQTAGLDYPEDVFRADAGVLDGVTLAG
+RGPVADRLWNAPALSIIGIDAPSVAESSNTIQPAARAKFSLRLGPGMDPAEAFEALRTHL
+EAQSAAVLGAEITVTAGEFGQPFTTDTSATAAAAMMAALEDAWDVEPRAIGMGGSIPFTA
+DLAQVFPEATLLITGVEDPDTRAHSANESLHIDDFQRAVVAEALWLARLSA
+>TT9_LFPAFLNI_01164
+MTDITSRAPQDAA----LVSAVREAVEARFPTTLQTLTDLVAIPGIAWDSADRTQLERSA
+EAVAGLLREAGLQEVEIVTETRDDDRPGGPAVIGEKPGASDKPTVLLYAHHDVQPIGDED
+LWDTPPLEATERGGRLYGRGAADDKAGIMVHLAALAALRDVLPDAGVGVRVFIEGEEEAG
+SPTFRTFLEKHRARLDADAIVVADSSNWAVGEPALTTSLRGLVDGTVTVRVLDHAVHSGM
+FGGPVLDAVVLLSRLIATLHDADGAVAVPGLEPRQTAGLDYPEDVFRADAGVLDGVTLAG
+RGPVADRLWNAPALSIIGIDAPSVAESSNTIQPAARAKFSLRLGPGMEPAEAFEALRTHL
+EAQSAAVLGAEITVTAGEFGQPFTTDTSAPAAAGMMAALEDAWGVEPRAIGMGGSIPFTA
+DLAEVFPEATLLITGVEDPDTRAHSANESLHIDDFQRAVVAEALWLARLSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001156.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001156.fa
new file mode 100644
index 0000000000000000000000000000000000000000..24dfd40a081e893493b8e4438177e9236b151901
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001156.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01681
+MALSADETGVEIGATQDSEGLPPHEVELTDVAAGKVRSLLEQEGRTDLRLRVAVQPGGCS
+GLIYQLYFDERVLDGDTVRDYDGVQVIVDKMSVPYLMGATIDFEDTISKQGFTIDNPNAV
+GSCACGDSFH
+>KBS0714_MOLHKGIG_01206
+MALSAEETGVEIGATQDAEGLPPHEVELTDVAAGKVRSLLEQEGRTDLRLRVAVQPGGCS
+GLIYQLYFDERVLDGDTVRDYDGVEVIVDKMSVPYLMGATIDFEDTISKQGFTIDNPNAG
+GSCACGDSFH
+>KD337_NAFOICDF_01579
+MALSAEETGVEIGATEDATGLPPHEVELTDVAAAKVRALLEQEGRTDLRLRVAVQPGGCS
+GLIYQLYFDERVLDGDTVRDYDGVEVIVDKMSVPYLMGATIDFEDTISKQGFTIDNPNAV
+GSCACGDSFH
+>SA211_MHAAABBN_00925
+MALSAEETGVEIGATQDAEGLPPHEVELTDVAAGKVRSLLEQEGRTDLRLRVAVQPGGCS
+GLIYQLYFDERVLDGDTVRDYDGVEVIVDKMSVPYLMGATIDFEDTISKQGFTIDNPNAG
+GSCACGDSFH
+>TT9_LFPAFLNI_01163
+MALSAEETGVEIGATQDAEGLPPHEVELTDVAAGKVRSLLEQEGRTDLRLRVAVQPGGCS
+GLIYQLYFDERVLDGDTVRDYDGVEVIVDKMSVPYIMGATIDFEDTISKQGFTIDNPNAG
+GSCACGDSFH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001157.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001157.fa
new file mode 100644
index 0000000000000000000000000000000000000000..eb35eaecbef006e23499e4075666c9ec73d275d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001157.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01682
+-------------------MGTTALLVLTGCSAEVQRGWYPGTRDTTNHNAQLTDLWVNS
+WIAAMVVGLLAWGAMIWCMVAYRRRKNDQGFPKQTAYNVPLETMFTIIPILMVFTLWGFT
+NRVQTEVDRPVDDSPLTVTVYGKQWSWDFNYSYEQENGEVVEANYSGIQAQLDGTEGVRD
+TLPVLYLPKDVPVHFELKSRDVAHSFWIPQFLQKRDLIPGKTNHLYLTPQELGSYDGKCA
+ELCGEFHSEMLFNVEVVDEAEFVDRLAEMEPGLVGDEYSRNPNNNPDGAREMERDLQTPR
+GGGSH
+>KBS0714_MOLHKGIG_01205
+-------------------MGTTALLVLTGCSAEVQRGWYPGTRDTTNHNAQLTDLWVNS
+WIAAMVVGLLVWGAMIWCMVAYRRRKNDQGFPKQTAYNVPLETMFTAIPILTVFTLWGFT
+DRVQTEVDRPVDDSPLTVTVYGKQWSWDFNYSYEQEDGEVIEAHYSGIQAQLDGTEGVRD
+TLPVLYLPNDVPVHFELKSRDVVHSFWIPQFLQKRDMVPGKTNHLYLTPQELGSYDGKCA
+ELCGEFHSEMLFNVEVVDEAEFVQRLEEMESGQVGEEYSRNPNNNPDGAGTMERDLQTPR
+GGGSH
+>KD337_NAFOICDF_01580
+MRAQNDAGRRTRRRLTAGALGATALVALTGCSAEAQRGWLPGTDNTTNHNAQLTDLWVNS
+WIAALAVGLIAWGAMIWCMIAYRRRKNDQGFPRQTAYHMPIETMFTVIPILMVFTLWGFT
+DRVQAEVDTPIDDSPLTVTVYGKQWSWDFNYSYEKD-GQTREAHFQGVQAQLDGSDGKRE
+TLPTLYLPKDVPVHFELKSRDVAHSFWIPQFLQKRDMLPGKTNNLYLTPQEIGRFDGKCA
+ELCGEFHSEMLFNVEVVDEATFVQKMNEMEPGLVGDELNRNPNQNPDGARNMEVDLQTPR
+GGGNH
+>SA211_MHAAABBN_00924
+-------------------MGTTSLLVLTGCSAEVQRGWYPGTRDTTNHNAQLTDLWVNS
+WIAAMVVGLLAWGAMIWCMVAYRRRKNDQGFPKQTAYNVPLETMFTAIPILMVFTLWGFT
+NRVQTEVDRPVDDSPLTVTVYGKQWSWDFNYSYEQENGEVIEAHYSGIQAQLDGTEGVRD
+TLPVLYLPNDVPVHFELKSRDVAHSFWIPQFLQKRDMVPGKTNHLYLTPQELGSYDGKCA
+ELCGESHSEMLFNVEVVDEAEFVQRLEEMEPGQVGDEYSRNPNNNPDGAGTMERDLQTPR
+GGGSH
+>TT9_LFPAFLNI_01162
+-------------------MGTTALLVLTGCSAEVQRGWYPGTRETTNHNAQLTDLWVNS
+WIAAMAVGLLAWGAMIWCMVAYRRRKNDQGFPKQTAYNVPLETMFTAIPILMVFTLWGFT
+DRVQTEVDRPVDDSPLTVTVYGKQWSWDFNYSYEQENGEVIEAHYSGIQAQLDGTEGVRD
+TLPVLYLPNDVPVHFELKSRDVAHSFWIPQFLQKRDMVPGKTNHLYLTPQELGSYDGKCA
+ELCGEFHSEMLFNVEVVDEAEFVQRLEEMEPGQVGDEYSRNPNNNPDGAGTMERDLQTPR
+GGGSH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001161.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001161.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1d58e9ee91ad8b123dba20472c4cca412a2efd96
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001161.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01687
+MGEKGFEGTEHGSGSLEHAGEDAPRYAIDNPGLPPHRPRLADEDPKAAKRAERQVSVMFL
+ISIVGTLLFFVGYFGVGQIGNGEAFSKIYLQNLLLGLGTALAMFGIGIGVVHWAKTLMPD
+HETVEDRHEIRSEADRVAATGMISEILDESQIKRRPLLRNTLIGAAVLAPLPFIAVFRDL
+DDSDNFSDEETHNFGPERLRHTMWSEGVRLVRDPTGSPIKASDVTLGSAVHVIPDGLNDL
+GPDKLNQKAKAVVLLMRLDPAKVKITPGREDWNVDGIFAYSKVCTHVGCPIALYEQHTHH
+LLCPCHQSTFDLTQECKVIFGPASHALPQLPITVDDEGFLVAQSDFHEPVGPVYWERG
+>KBS0714_MOLHKGIG_01200
+MGEKGLEGTERRSGSLEHAGEDAPRYAIDDPGLPPHRPRLADEDPKAAKRAERQVSVMFL
+ISIVGTVLFFIGYFGVGQIGNGEAFSKIYLQNLLLGLGTALAMFGIGIGVVHWAKTLMPD
+HETVEDRHEIRSEDDRVAATGMISEILDESQIKRRPLLRNTLIGAALLAPLPFIAVFRDL
+DDSDNFSDQEAHNFGPERLRHTMWAEGVRLVRDPTGSPIKASDVTLGSAVHVIPDGLNDL
+GPDKLNQKAKAVVLLMRLDPAKVRITPGREDWNVDGIFAYSKVCTHVGCPIALYEQHTHH
+LLCPCHQSTFDLTQECKVIFGPASHALPQLPITVDDEGFLVAQSDFHEPVGPVYWERG
+>KD337_NAFOICDF_01584
+MGEKGYEGAERHSDALEHAGEESPRYAIDNPGLPPHRPRLADEDPRAAKRAERQVSVFFL
+ISVIGTVLFFIGYFGVGQVGNGESTSVLYLQNLLLGLGVALAMFGIGIGVVHWAKTLMPD
+HEVVEERHEIRTEADRAAAQGMIADILDESQIKRRPLLRNTLIGAAVLAPLPFIAAFRDL
+DNTDNFSDEAAKNFGPERLRHTMWHEGVRLVRDPTGSPIKASDVTLGSALHVIPDGLNDL
+EHGKLNEKAKAVVLVMRLDPSKVKISPGRENWNVDGIFAYSKVCTHVGCPIALYEQHTHH
+LLCPCHQSTFDLAQECKVIFGPASHALPQLPITVDDEGYLVAQSDFHEPVGPVYWERG
+>SA211_MHAAABBN_00920
+MGEKGFEGTEHRSGSLEHAGEDAPRYAIDNPGLPPHRPRLADEDPKAAKRAERQVSVMFL
+ISIVGTVLFFIGYFGVGQIGNGEAFSKIYLQNLLLGLGTALAMFGIGIGVVHWAKTLMPD
+HETVEDRHEIRSEDDRVAATGMISEILDESQIKRRPLLRNTLIGAALLAPLPFIAVFRDL
+DDSDNFSDQEAHNFGPERLRHTMWAEGVRLVRDPTGSPIKASDVTLGSAVHVIPDGLNDL
+GPDKLNQKAKAVVLLMRLDPAKVKITPGREDWNVDGIFAYSKVCTHVGCPIALYEQHTHH
+LLCPCHQSTFDLTQECKVIFGPASHALPQLPITVDDEGYLVAQSDFHEPVGPVYWERG
+>TT9_LFPAFLNI_01154
+MGEKGFEGTEHRSDSLEHAGEDAPRYAIDNPGLPPHRPRLADEDPKAAKRAERQVSVMFL
+ISIVGTVLFFIGYFGVGQIGNGEAFSKIYLQNLLLGLGTALAMFGIGIGVVHWAKTLMPD
+HETVEDRHEIRSEDDRVAATGMISEILDESQIKRRPLLRNTLIGAALLAPLPFIAVFRDL
+DDSDNFSDEEIHNFGPERLRHTMWAEGVRLVRDPTGSPIKASDVTLGSAVHVIPDGLNDL
+GPDKLNQKAKAVVLLMRLDPAKVKITPGREDWNVDGIFAYSKVCTHVGCPIALYEQHTHH
+LLCPCHQSTFDLTQECKVIFGPASHALPQLPITVDDEGYLVAQSDFHEPVGPVYWERG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001162.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001162.fa
new file mode 100644
index 0000000000000000000000000000000000000000..718b75dd5910c4edf26f1fb1278a9f668ce88d6d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001162.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01688
+MKALSQNRRHPLMGLALLLLGLLVTGGLYSVASTVNQAQAATQVTAAASADDITEGEKLF
+NANCATCHGMGAAGGPSGPSLIGVGAASVDFQVGTGRMPMQMNGPQAPAKPNQFNEEQTA
+QLAAYVASLGAGPAIPEDEYLDINNEDVDITRGGDLFRINCAMCHNAAAAGGALTRGKFA
+PSLQGVEEKYIYEAMETGPQNMPVFSDANIKPEDKRDIIAYLKTIENQGSPGGLSLGSLG
+PVSEGLFIWTAGLALIIGFMVWLTSRSS
+>KBS0714_MOLHKGIG_01199
+MKALSQNRRHPLMGLALLLLGLLVTGGLYSVASTVNQAQAATQVTAAASADDISEGEKLF
+NANCASCHGTGAAGGPSGPSLIGVGAASVDFQVGTGRMPMQMNGPQAQVKPNQFNDEQTA
+QLAAYVASLGAGPAVPEDEYLDVNHEDVDITRGGDLFRINCAMCHNAAAAGGALTRGKYA
+PSLQGVEEKHIYEAMETGPQNMPVFSDSNIKPEDKRDIIAYLKTIENQGSPGGLALGSLG
+PVSEGLFIWTAGLALIIGFMVWLTSRSS
+>KD337_NAFOICDF_01585
+MKALSQNRRHPLVGLALLLLGLLVTGGLYSVASTVNQAQAATQVTAAAAADDITAGEKLF
+NANCASCHNMGATGTADGPSLVGVGAAAVDFQVGTGRMPMQMNGPQAQRKPNQFSEEQTA
+QLAAYVASLGAGPAVPADEDLDPNAEGVNIAKGGDLFRINCAMCHNAAAAGGALTRGKFA
+PSLEGVSEKHIYEAMETGPQNMPVFSDANLKPEDKRDIIAYLKTIEANGSPGGLQLGSLG
+PVAEGLFIWTAGLALIVGFMVWLTSRSS
+>SA211_MHAAABBN_00919
+MKALSQNRRHPLMGLALLLLGLLVTGGLYSVASTVNQAQAATQVTAAASADDITEGEKLF
+NANCASCHGMGAAGGPSGPSLIGVGAASVDFQVGTGRMPMQMNGPQAPAKPNQFNEEQTA
+QLAAYVASLGAGPAIPEDEYLDVNHEDVDITRGGDLFRINCAMCHNAAAAGGALTRGKYA
+PSLQGVDEKHIYEAMETGPQNMPVFSDSNIKPEDKRDIIAYLKTIENQGSPGGLTLGSLG
+PVSEGLFIWTAGLALIIGFMVWLTSRSS
+>TT9_LFPAFLNI_01153
+MKALSQNRRHPLMGLALLLLGLLVTGGLYSVASTVNQAQAATQVTAAASADDISEGEKLF
+NANCASCHGTGAAGGPSGPSLIGVGAASVDFQVGTGRMPMQMNGPQAQVKPNQFNDEQTA
+QLAAYVASLGAGPAVPEDEYLDVNHEDVDITRGGDLFRINCAMCHNAAAAGGALTRGKYA
+PSLQGVEEKHIYEAMETGPQNMPVFSDSNIKPEDKRDIIAYLKTIENQGSPGGLALGSLG
+PVSEGLFIWTAGLALIIGFMVWLTSRSS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001163.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001163.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9373b74bde6456a70a6591db07ad4574684bdc95
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001163.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01689
+MVQVGTMVWLASELMFFGGLFAMYFTLRSTSPELWAENTAILNVPLAAANTLILVLSSVT
+AQFGVLAAERLQPRRTGGFLQFGKWGMVEWFILTFIMGSIFVAVQSYEYAVLVSEGVTIA
+ANAYGSAFYITTGFHAIHVTGGLIAFLFIIGRAYMARRFGHHEATSAIVVSYYWHFVDVV
+WIALFFIVYFLK
+>KBS0714_MOLHKGIG_01198
+MVQVGTMVWLASELMFFGGLFAMYFTLRSTSPELWAEHTAILNVPLAAVNTTILVLSSVT
+AQFGVLAAERLQPRRTGGFLQFGKWGMVEWFILTFIMGSIFVAVQSYEYAVLVSEGVTVA
+ANAYGSAFYITTGFHAIHVTGGLIAFLFIIGRAYMARRFGHHEATSAIVVSYYWHFVDVV
+WIALFFIVYFLK
+>KD337_NAFOICDF_01586
+MVQVGTMVWLASELMFFGGLFAMYFTLRSTSPELWAEHTAILNVPLAAVNTVILVLSSFT
+AQFGVLAAERLQPRRTGGLFSVKSWGMVEWFILTFIMGSIFVAVQAFEYATLVSEGVTIA
+ANAYGSAFYITTGFHALHVTGGLIAFLFIIGRAFLARRFGHHEATSAIVVSYYWHFVDVV
+WIALFFIVYFLK
+>SA211_MHAAABBN_00918
+MVQVGTMVWLASELMFFGGLFAMYFTLRSTSPELWAEHTAILNVPLAAVNTTILVLSSVT
+AQFGVLAAERLQPRRTGGFLQFGKWGMVEWFILTFIMGSIFVAVQSYEYAVLVSEGVTVA
+ANAYGSAFYITTGFHAIHVTGGLIAFLFIIGRAYMARRFGHHEATSAIVVSYYWHFVDVV
+WIALFFIVYFLK
+>TT9_LFPAFLNI_01152
+MVQVGTMVWLASELMFFGGLFAMYFTLRSTSPELWAEHTAILNVPLAAVNTTILVLSSVT
+AQFGVLAAERLQPRRTGGFLQFGKWGMVEWFILTFIMGSIFVAVQSYEYAVLVSEGVTVA
+ANAYGSAFYITTGFHAIHVTGGLIAFLFIIGRAYMARRFGHHEATSAIVVSYYWHFVDVV
+WIALFFIVYFLK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001165.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001165.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f0017450ebba6f8f25f8d8774d0158a416eab707
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001165.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01691
+MVTAIVMIKTDKSSIPETAETLAALEGIGSVYSVTGAWDLVAMVKVRRYEDLADVIADHL
+SKVEGIQDTETMLAFRTYSSEDLGEGWALGFED
+>KBS0714_MOLHKGIG_01196
+MVTAIVLIKTDKSSIPETAETLAALEGVGSVYSVTGAWDLVAMVKVRRYEDLADVIADHL
+SKVDGIQDTETMLAFRAYSSEDLGEGWALGFDS
+>KD337_NAFOICDF_01589
+MVTAIVMITTDKSTIPETAQAIASLEGVSSVYSVTGAWDLVAMVKLKRYEDLADVIADQL
+SKVDGIEDTETMLAFRTYSTEDLEEGWALGFDG
+>SA211_MHAAABBN_00916
+MVTAIVLIKTDKSSIPETAETLAALEGVGSVYSVTGAWDLVAMVKVRRYEDLADVIADHL
+SKVDGIQDTETMLAFRTYSSEDLGEGWALGFDS
+>TT9_LFPAFLNI_01150
+MVTAIVLIKTDKSSIPETAEALAALEGVGSVYSVTGAWDLVAMVKVRRYEDLADVIADHL
+SKVDGIQDTETMLAFRTYSSEDLGEGWALGFDS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001166.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001166.fa
new file mode 100644
index 0000000000000000000000000000000000000000..721724dddbf7d390619c5748a2447d3a7fbc8332
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001166.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01692
+MADTLSENRSETMAQTGGMTDSPT-RRHSPASPPSP--LWAAT--ALAVDAVLVVVFVAL
+GQDQHTTDRGLGGLLATALPFLLGLVAATVLTAGHRTWHRVWPHGVAVWLGTVAVGMALR
+VLWDQGGAPLSFVLVALGVLGVFLLGRRAVTAWVIRRRAR-----V
+>KBS0714_MOLHKGIG_01195
+------------------MTSSPTARRAAPAEHRDP--RGALP--ALAVDLLLTLLFVAL
+GQGQHSTERGPLGLLVTAAPFLAGLLLMTGVTAGHRTWARAWPHGVIVWLGTVAVGMLLR
+VAFGLGGAPVSFVLVALGVLGVLLLGRRAVTAWLVRRTRR------
+>KD337_NAFOICDF_01590
+------------------MSTTPLPQDSSPAAHPSDRRRGSAPWVAFALDAALVVLFVAL
+GQREHATDRGGLALVTAAAPFLLAWVAGTALAGGPRTWARVWPQGVVVWAVTVAAGMGLR
+VLWGLGGAPVPFVLVASAVLAVFLLGRRWASTLLAHRATDRASRAS
+>SA211_MHAAABBN_00915
+------------------MTSSPTARRAVPAEHRDP--RGAQP--ALAVDLLLTLLFVAL
+GQGQHATERGPLGLLVTAAPFLAGLLVMTGLTAGHRTWARVWPHGVIVWLGTVAVGMVLR
+VAFGLGGAPVSFVLVALGVLGVLLLGRRAVTAWLVRRTRR------
+>TT9_LFPAFLNI_01149
+------------------MTSSPTARRVVPAEHRAP--RGALP--ALAVDLLLTVLFVAL
+GQGQHSTERGPVGLLVTAAPFLAGLLLMTGLTSGHRTWARVWPHGVIVWLGTVAVGMVLR
+VAFGLGGAPVSFVLVALGVLGVLLLGRRAVTAWLVRRTRR------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001167.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001167.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e03401fd8376fb17050bc54fd4923812c76593bb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001167.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01693
+MIVLHLLPLTAPDAADAAWTRVGDEL-NRPGAVSSLVMPFDRQGEGSE---------ARL
+VGGMDSGVEAVGILLSLVRSGAWAVVVEVAEGRAAGESLLQ----REAERARRANGHCAV
+LGPSGPSAA----------WIEPALQLLGALERRRSEPQQDAGRRVEAGASQREVAAELQ
+VSQQAVHARLRGGLWNETRALAGATADALDVLARRGDRVSDGGASPSTSERG
+>KBS0714_MOLHKGIG_01194
+MVSVHLVPIRPTAATADDAQRLSAALLDDPRPGAAVISAAWHIDE-----TDAAPGDGEL
+AVTLDGMAAGVGLALWAVRSGSWAVLLD-TEGNYDKQSALSHITAGERRRARRAPGRLVL
+PHGRRPGRASETGREADLRCAEATLQLVATVERRRSDDQHAAGRLVEAGASQREAAAELG
+ISQQAVHSRLRHGLWHESRTAVAAVLPLLERLS------ADPGE--------
+>KD337_NAFOICDF_01591
+-----MVPVAVRCGSAGAAGRWA----------ASIPGARRLGREGGR----------DL
+IVHADDAAAAVALMLAVRRAGAGAVGAGVAIEQVEG----------ALRRARRRPGGIAV
+--SRVPG---STGTEEERGLLEAGLGVLLTLESRRSAPQQAAGVLIEAGRSQREAAADLG
+VSQQAVQQRLRAGLWEETRTLLDALLPMARRVL----------EA-------
+>SA211_MHAAABBN_00914
+MVFVHLVPIRPTAATADDARRLAAVLLDDPHPDASVAAAVWRGDEGNP-DADAAPGDGEL
+AVVVESMAAAVGLALWAVRTGSWAVLLD-PEDALDKDSLLSYLTPAERRRARRAPGRLVL
+PHGRRPGRASETGREADLRCAEATLQLVATVERRRSDDQHAAGRLVEAGASQREAAAELG
+ISQQAVHSRLRHGLWHESRTAVAAVLPLLERLS------ADPGE--------
+>TT9_LFPAFLNI_01148
+MVSVHLVLIRPTTATAEDARRLATALRDDPRPDAAVTAAMWLGDESDPVDDDAAPHDGEL
+AVVLDDAAAAVGLALWAVRTGSWAVMLD-PEGGSDKDSALSYLTPAELRRARRAPGRLVL
+PAGGRPGRASESGREADLRCAEATLQLVAAVERRRSADQHAAGRLVEAGASQREAAAELG
+ISQQAVHSRLRHGLWHVSRTAVAAVLPLLERLS------TDPGE--------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001168.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001168.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9225eefd6d3d6a4b287f4884d6df2c23694b8f72
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001168.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01695
+MALIYTAQLDPDKPEWIRRRLVAHGLPEDVDAEKVGSYRFDDPAGEVGVESMIVRVG---
+-DRLYQTAFAYRGEAPTEGDIVAEADHSVLGRRWVMDAATDPDARRILTAGLRGEIPQAV
+MDFHDESGAYLETRQPDVTLRLVGEG-DGGELELPVELADAAEESGDGPRRLVAEGEGFT
+A-VVARLA
+>KBS0714_MOLHKGIG_01193
+MALIYTARLDPDKPEWIRRRLVAHGLPEDVTAEKVGSYRFDDPTGEIGVESMLVRVG---
+-DRLYQTAFAYRGDAPAEGDVVAEVEHSVLGHRWVVDAATDPDARRILAAAVRGEIPQAR
+LEMHDESGTYLETRAPDLTLRVIGAD-ATGELEVPVELSETGEADVDGPRCLIAEGDGVR
+A-VVARLT
+>KD337_NAFOICDF_01594
+MSFIYSAQLDPDKNEWIRRALVAHGEDPDVPFTRAGSYRFDDPAGELGLEVMLVRVGGAD
+DGRLVQTPLSYRSAARDGATVLLTAEHSVLGTRWIHDALTDPEAREVLRRGVAGELAQEV
+LEVHDEHGVRTGTRQPDMTVTAVGTGPAAGELDMPYELDPADTA--DGGRALVAEGDGFS
+GLVVARLV
+>SA211_MHAAABBN_00912
+MALIYTARLDPDKPEWIRRRLVAHGLPEDVTAEKVGSYRLDDPAGEIGVESMVVRVG---
+-DRLYQTPFAYRGDAPAEGDVVAEVEHSVLGHRWVVDAATDPDARRILAAAVRGEIPQAR
+LEMHDESGTYLETRAPDLTLRVIGAD-ATGELEVPVELSETDEADVDGPRCLVAEGDGVR
+A-VVARLS
+>TT9_LFPAFLNI_01143
+MALIYTARLDPDKPEWIRRRLVAHGLPEDVTAEKVGSYRFDDPTGEIGVESMLVRVG---
+-DRLYQTAFAYRGDAPAEGDVVAEVEHSVLGHRWVVDAATDPDARRILAAAVRGEIPQAR
+LEMHDESGTYLETRAPDLTLRVIGAD-ATGELEVPVELSETDEADVDGPRCLVAEGDGVR
+A-VVARLS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001172.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001172.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d85c3af84fc6aeba7e5a17adc2eebf8b33cf55e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001172.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01699
+MSDRSLRGMRLGAQSLESEAGVEPAARQRVEYRTEDGEQVFVTFSVEADVPATWTSKTGK
+EAFLVSGEKPAEAEGKPVRTHWDMLRERRSLEELQETYALQLNKLRASRGEDVDA
+>KBS0714_MOLHKGIG_01189
+MSDRSLRGMRLGAQSLESEAGVEPAARQRVEYRTEDGEQVFVTFSVEADVPATWTSKTGK
+EAFLVSGEKPAETEGKPVRTHWDMLRERRSLEELEETYKIQLNKLRASRGEEVDA
+>KD337_NAFOICDF_01598
+MSDRSLRGMRLGAQSLESEAGVEPAPRQRVEYRTEDGEQVFVTFAQEAEVPTTWTSKTGK
+EALRVDGEKPEENPGKPVRTHWDMLLERRSMEELEETFQIQLKKLHASRGEAV--
+>SA211_MHAAABBN_00908
+MSDRSLRGMRLGAQSLESEAGVEPAARQRVEYRTEDGEQVFVTFSVEADVPATWTSKTGK
+EAFLVSGEKPAETEGKPVRTHWDMLRERRSLEELEETYKIQLNKLRASRGEDVDA
+>TT9_LFPAFLNI_01139
+MSDRSLRGMRLGAQSLESEAGVEPAARQRVEYRTEDGEQVFVTFSVEADVPATWTSKTGK
+EAFLVSGEKPAETEGKPVRTHWDMLRERRSLEELEETYKIQLNKLRASRGEEVDA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001183.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001183.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b689022bc5ce11ed8e68956fe3cdba98c28d896c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001183.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01712
+MIRDESIEAYLGRLASGEPTPGGGATGALAVAEGAGLLAMAARFSAAEEDARASEVLIAA
+CLGLADGDERGFGAVAEAFGLPRDTPVARSRRSAAIQAALAEAVRPPRGIVDAAARALDL
+AERVLDAANPNVLSDVGAALGCIRGGLTAATVTLETNLGPLRDEGVEGILRTDVDRADRL
+VARADALLGRVRAAITG
+>KBS0714_MOLHKGIG_01177
+MIRDESIESYLGRLASGEPTPGGGATGALAVAEGAGLLAMAARFSAAEEDARASEGLIAA
+CLGLADGDERGFGAVAEAFGLPRDTLEDRARRSAAIQAALAEAVQPPRGIVDVAERALDL
+AERVLDAANPNVLSDVGAALGCVRGGLTAAAVTLETNLGPLRDEGLEGIVRTDVDRADRL
+VARADALLGRVRAAVTG
+>KD337_NAFOICDF_01610
+MIRHETVEDHLTRLASGEPTPGGGATGALVVAQGAGLVAMAARFSGREEVAVECERVIRD
+SLAISDEDEEGFAAVADAYTLPKDGDAARARRSAAVQAALDQAVRPPRAIVDAVDRTVGL
+AERVLDDANPHVLSDVGAALGCARAGAGAAVVTLLTNLSPLHDEQLGAELRAEIARADEL
+TSRIDALAARVRERIAR
+>SA211_MHAAABBN_00896
+MIRDESIESYLGRLASGEPTPGGGATGALAVAEGAGLLAMAARFSAAEEDARASEGLIAA
+CLGLADGDERGFGAVAEAFGLPRDTPEDRARRSAAIQAALAEAVQPPRGIVDVAERALDL
+AERVLDAANPNVLSDVGAALGCVRGGLTAAAVTLETNLGPLRDEGLEGVLRTDVDRADRL
+VARADALLGRVRAAVAG
+>TT9_LFPAFLNI_01127
+MIRDESIESYLGRLASGEPTPGGGATGALAVAEGAGLLAMAARFSAAEEDARASEGLIAA
+CLGLADGDERGFGAVAEAFGLPRDTPEDRARRSAAIQAALAEAVRPPRGIVDAAARALDL
+AERVLDAANPNVLSDVGAALGCVRGGLTAAAVTLETNLGPLRDEGLEGVLRTDVDRADRL
+VARADALLGRVRAAVTG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001185.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001185.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e12e99955e2ac31102f46d77c6f2262f30e5038a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001185.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01714
+M---DQDAQGGPEQL---ERRLGEARELLRQSQAEAERLRHQLDSAQRHAARLSERRREAEAQTQTAARNNRRMVELLET
+TRAEITTLKENLDAVTHPPFTFATLEAVHAPREPEEGVETGAVVRGGADVVQNGRRLRVTVSPLLDAARLVPGAQVLLDE
+SSAIVGVAPGTGSGQLLRVKEALPDGGLVLAGTADEERVVRRAPALEGVELRHGDAVTVDSRVEWALRRVELSEVDEVLL
+EEVPDVTFEDIGGLGPQIDRIREAVEIPFLHPEVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSARSADGERSFFL
+NVKGPELLNKYVGETERQIRVIFDRAREKADAGFPVVIFFDEMESLFRTRGSGVSSDVETTIVPQLLTEIDGVEALENVI
+VIGASNREDMIDPAVLRPGRLDVKIRVDRPDAAGAAEIMAKHLTADVPLHADDVATAGSADAARATLIARTVAALYDRGT
+GTALAELTDVSGTTRALHLADLVSGAVVADVVDRAKRHAVRDYLAAGQAPAALGVREGHLREAVVAVLEDQTDLLATVAP
+AEWARTSGWRGPRLRSLRMVRGV--EA
+>KBS0714_MOLHKGIG_01175
+M---DHHAQSGTEHA---EQRLAEARELLRQSQAEAERLRHQLQSAQRHAAGLSERRRAAEAQTQTAARNNRRMVELLEA
+TRAEITTLKENLDAVTHPPFTFATLEAVHAPREPEEGVETGAVVRGGADVVQNGRRLRVTVSPLLDAARLTPGAQVLLDE
+SSSIVGVAPGTGSGQLLRVKEALPDGGLVLAGTADEERVVRRAPALEGVDLRHGDAVTVDARVEWALRRVELSEVDEVLL
+EEVPDVTFEDIGGLGPQIDRIREAVEIPFLHPEVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSARSADGERSFFL
+NVKGPELLNKYVGETERQIRVIFDRAREKADAGFPVVIFFDEMESLFRTRGSGVSSDVETTIVPQLLTEIDGVEALENVI
+VIGASNREDMIDPAVLRPGRLDVKIRVDRPDAAGAAEIMAKHLTADVPLHADDVAAAGSADAARATLIARTVAALYDRGA
+DTALAELTDVSGTTHALHLADLVSGAVVADVVDRAKRHAVRDYLAAGQAPAALGVREGHLREAVAAVLEDQTDLLATVAP
+AEWARTSGWRGPRLRSLRMVRGV--EA
+>KD337_NAFOICDF_01612
+MTEDDTQDRAGVLPAGDDARRLAEARELLRQSQAEAERLRHQLASAQRHGAQLSERRRAAQAQLDVAARNNRRMVELLEA
+TRTEMTSLKEALDDTTKAPFTFARLEAVHAARAPREGVETGAVVRAGADVVQNGRRLRVAVSPLLDAAALTAGAEVLLDE
+SSTIVGEVEHSVSGQLLRVKESLPDGSLVLAGAADEERVVRRAPALAGEVLRHGDAVTVDPRLEWALARVELSEVDDVLL
+EEVPDVTFDDIGGLGPQIERIREAVEVPFLHPDLYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSARSAEGGRSFFL
+NIKGPELLNKYVGETERQIRIIFQRAREHAAAGSPVVVFFDEMESLFRTRGSGVSSDVETTIVPQLLAEIDGVESLDNVI
+VIGASNREDMIDPAVLRAGRLDVKIRVDRPDARGAVDIMARHLDEEVPLHVDEVRDAGSAEQAREELIGAAVTALYERSP
+RTALAELTDITGATSTLHLADLVSGAVVADVVDRAKRAAVRDLLAADLDPAARGLRTRHLLDAVDAVLADQADLLGTVAP
+GEWARTSGWRGPRLAELRMLPGAGGRP
+>SA211_MHAAABBN_00894
+M---DHHAQSGTEHA---EQRLAEARELLRQSQAEAERLRHQLQSAQRHAAGLSERRRAAEAQTQTTARNNRRMVELLEA
+TRAEITTLKENLDAVTHPPFTFATLEAVHAPRDPEEGVETGAVVRGGADVVQNGRRLRVTVSPLLDAARLTPGAQVLLDE
+SSSIVGVAPGTGSGQLLRVKEALPDGGLVLAGTADEERVVRRAPALEGVDLRHGDAVTVDARVEWALRRVELSEVDEVLL
+EEVPDVTFEDIGGLGPQIDRIREAVEIPFLHPEVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSARSADGERSFFL
+NVKGPELLNKYVGETERQIRVIFDRAREKADAGFPVVIFFDEMESLFRTRGSGVSSDVETTIVPQLLTEIDGVEALENVI
+VIGASNREDMIDPAVLRPGRLDVKIRVDRPDAAGAAEIMAKHLTADVPLHADDVAAAGSADAARATLIARTVAALYDRGG
+DTALAELTDVSGTTHALHLADLVSGAVVADVVDRAKRHAVRDYLAAGQAPAALGVREGHLREAVAAVMEDQTDLLATVAP
+AEWARTSGWRGPRLRSLRMVRGV--EA
+>TT9_LFPAFLNI_01125
+M---DHHAQSGTEHA---EQRLAEARELLRQSQAEAERLRHQLQSAQRHAAGLSERRRAAEAQTQTAARNNRRMVELLEA
+TRAEIATLKENLDAVTHPPFTFATLEAVHAPREPEEGVETGAVVRGGADVVQNGRRLRVTVSPLLDAARLTPGAQVLLDE
+SSSIVGVAPGTGSGQLLRVKEALPDGGLVLAGTADEERVVRRAPALEGVDLRHGDAVTVDARVEWALRRVELSEVDEVLL
+EEVPDVTFEDIGGLGPQIDRIREAVEIPFLHPEVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSVRSADGERSFFL
+NVKGPELLNKYVGETERQIRVIFDRAREKADAGFPVVIFFDEMESLFRTRGSGVSSDVETTIVPQLLTEIDGVEALENVI
+VIGASNREDMIDPAVLRPGRLDVKIRVDRPDAAGAAEIMAKHLTADVPLHADDVVAAGSADAARATLIARTVAALYDRGA
+DTALAELTDVSGTTHALHLADLVSGAVVADVVDRAKRHAVRDYLAAGQAPAALGVREGHLREAVAAVLEDQTDLLATVAP
+AEWARTSGWRGPRLRSLRMVRGV--EA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001186.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001186.fa
new file mode 100644
index 0000000000000000000000000000000000000000..413e68a29596657fb4ee5ea04c9a5bf23b5c25a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001186.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01715
+MT---------------------EPTGVSARRGPLRAGQRVQIKDAKGRLNTITLLPGGE
+FHSYQGVLRHDDLIGGFEGVVVENSAGQPYQVLRPLLNDFVLSMPRGATVVYPKDAAQIV
+QQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERREEFADVARANVEAFFGAEH
+PAWSIHLGDAQEQMTRVHEPGSVDRVVLDMLAPWECLDAVAEVLAPGGVWLNYVATATQL
+SRVAEAIRDSGRFTQVEANETLVRGWHLDGLAVRPDHRMVAHTGFLLTARRLATGEEALR
+LKKRSKVSEFKAEDVEAWQPADEARWTPEALGERPVTDKKARKAAKEARLMAARSRAAER
+GVDAYGGSIQEQDQD
+>KBS0714_MOLHKGIG_01174
+MT---------------------EPTGVSARRGPLRAGQRVQIKDAKGRLNTITLLPGGE
+FHSYQGVLRHDDLIGGFEGVVVENSAGQPYQVLRPLLNDFVLSMPRGATVVYPKDAAQIV
+QQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERRPEFADVARANVEAFFGAEH
+PAWSVHLGDAQEEMPKVHEPGSVDRVVLDMLAPWECLDAVAEVLAPGGVWLNYVATATQL
+SRVAEAIRDSGRFTQVEANETLVRGWHLDGLAVRPDHRMVAHTGFLLTARRLASGEEALR
+LKKRSKVSEFRAEDVEAWQPADEARWTPEALGERPITDKKARKAAKEARLMAARSRAAEQ
+GVDAYGGRTPTGEQD
+>KD337_NAFOICDF_01613
+MSDATAPETPAAPTTPDTAAPAGRPAGVTARRGPLRAGQRVQIKDAKGRLNTITLLPGGE
+FHSYQGVLRHDDLIGGPEGIVVQNSSGHAYQVLRPLLNDFVLSMPRGATVVYPKDAGQIV
+QQADIFPGAVVVEAGVGSGALSMSLLRAVGDAGRLHSYERRAEFAEIARGNVESFFGGVH
+PAWSIHLGDAQEEMPKVHEPHSVDRVVLDMLAPWECLDAVATVLAPGGVWLNYVATATQL
+SRVAEAIRASGKFTQIEATETLVRGWHLDGLAVRPDHRMVAHTGFLLTARRLAAGEDALV
+MKKRLKVSEFTTEDVEAWTPSDGARWTPQALGERTVTDKKARKAAKEARLTARRARAALE
+GRDP---RTVGQDKD
+>SA211_MHAAABBN_00893
+MT---------------------EPTGVSARRGPLRAGQRVQIKDAKGRLNTITLLPGGE
+FHSYQGVLRHDDLIGGFEGVVVENSAGQPYQVLRPLLNDFVLSMPRGATVVYPKDAAQIV
+QQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERRPEFADVARANVEAFFGAEH
+PAWSVHLGDAQEEMPKVHEPGSVDRVVLDMLAPWECLDTVAEVLAPGGVWLNYVATATQL
+SRVAEAIRDSGRFTQVEANETLVRGWHLDGLAVRPDHRMVAHTGFLLTARRLASGEEALR
+LKKRSKVSEFKAEDVEAWQPADEARWTPEALGERPVTDKKARKAAKEARLMAARSRAAEQ
+GVDAYGGRTPTGEQD
+>TT9_LFPAFLNI_01124
+MT---------------------EPTGVSARRGPLRAGQRVQIKDAKGRLNTITLLPGGE
+FHSYQGVLRHDDLIGGFEGVVVENSAGQPYQVLRPLLNDFVLSMPRGATVVYPKDAAQIV
+QQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERRPEFADVARANVEAFFGAEH
+PAWSVHLGDAQEEMPKVHEPGSVDRVVLDMLAPWECLDAVAEVLAPGGVWLNYVATATQL
+SRVAEAIRDSGRFTQVEANETLVRGWHLDGLAVRPDHRMVAHTGFLLTARRLASGEEALR
+LKKRSKVSEFKAEDVEAWQPADEARWTPEALGERPVTDKKARKAAKEARLMAARSRAAEQ
+GVDAYGGRTPTGEQD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001187.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001187.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bd611f0a00f0264a9f091f656d8e435e2203666b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001187.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01716
+MSGAAARRIGSLRLGSVAGAPVLLSWTWLLIAVAIVLALGPQIRRALPELGAGAYGVALG
+YAVLLALSVLVHEVAHALAGRAAGQRAEEIALTLWGGHTQFRGAHAGPLGTVLTAMAGPA
+ANLALAGLAHLAARAVDGPSVAALLLDVSVWANLLLAAFNALPGAPLDGGRMVESAVWAA
+TGSRDRGVEASGWAGRVIAAGIVAAALLAPLLQGRTPDVLFTALLIWAALTLWRGAGDAV
+ARGRWGRRLAGLRLADLELAAVAVPEHLSVAEALAHADGGRRAAVAVDGAGLPRGVLDRT
+AVGRLDAAARAGTPVAAAAVALAPQAVLEREALPEAGPELAAVL-------ADPE-----
+---TPVWVLTDVRGLVRSVVTRERILAAVHATRRP-------
+>KBS0714_MOLHKGIG_01173
+MSGPA-----SVRLGTIAGAPVRLSWSWLLIAAAITLAFGPQIQRALPSLGGGAYGVALG
+YAVLLALSVLVHEAAHALTGRAFGQRTEEIALTLWGGHTQFRSPSARPLDTVLTAMAGPA
+ANLVLAGLAHLAARAVAGPSVPALLLEVTVWANLLLAAFNALPGTPLDGGRMVESAVWAA
+TGSRARGVEAAGWAGRVVAVGVLAAVLGPPILAGRAPDLFVVVLAAWVALTLWRGADDAV
+RHGRWSRRLETLRLEQVEAPAVALPEHLSVAEALAQADDGRRAVVAVDGAGRPRGVLDLA
+AAAGLTPERRTTTALAAVAVALAPGAVLVRDDVPAAGPDLAARL-------ADPQ-----
+---TPVWVLTDAHGLVRSVVPRETILAAVDATRRP-------
+>KD337_NAFOICDF_01614
+MSGPR-----ALTLGRIAGAPVRLSPAWVAVAGAVVLLFGPQVARALPGLGGAAWLVALG
+YAALLALSVLVHEAAHAVAGRAFGQRPQEIVLTLWGGHTQFAAPQATPVGTVVTALAGPA
+ANVVLAGLAWALGAAADARGVPGLLVDATVWANLLLAGFNALPGAPLDGGRMVESAVWAA
+TGSRDRGVAAAGWTGRLIAAALVIGWVAVPLVRGERPGLVVSLLLVWVAVTLWRGASESV
+ERGRWGRRLAGVRLADLAIPALAVPVDADASAVLAGVPAG-LAVVAVDEAGRPVGVLDRA
+ALDGAAASARV--PVAAACRAVAPHAVLAADSLPPSGGALVASLATAAESAADPRPGVPG
+LDSTPVWVLTDGHGAVRSVLPRERILTALATASRPDPEEPRP
+>SA211_MHAAABBN_00892
+MSGPA-----SVRLGTIAGAPVRLSWSWLLIAAVITLAFGPQIQRALPLIGGGAYGVALG
+YAVLLALSVLVHEAAHALTGRAFGQRTEEIALTLWGGHTQFRSPSARPLDTVLTAMAGPA
+ANLVLAGLAHLAARAVAGPSVLALLLEVTVWANLLLAAFNALPGTPLDGGRMVESAVWAA
+TGSRARGVEAAGWAGRVVAVGVLAAVFGPPTLAGRAPDLFVVVLAAWVALTLWRGADDAV
+RHGRWSRRLETLRLEQVEAPAIALPEHLCVAEALAQADGGRRAVVAVDGAGRPRGVLDHT
+AAAGLTPARRTTTALAAVAVALAPEAVLVRDDVPAAGPDLASRL-------ADPQ-----
+---TPVWVLTDAHGLVRSVVPRETILAAVDATRRP-------
+>TT9_LFPAFLNI_01123
+MSGPA-----SVRLGTIAGAPVRLSWSWLLIAAVITLAFGPQIQRALPSLDGGAYGVALG
+YAVLLALSVLVHEAAHALTGRAFGQRTEEIALTLWGGHTQFRSPSARPLDTVLTAMAGPA
+ANLVLAGLAHLAARAVPGPSVPALLLEVTVWANLLLAAFNALPGTPLDGGRMVESAVWAA
+TGSRARGVEAAGWAGRVVAVGVLAAVFGPPTLAGRAPDLFVVVLAAWVALTLWRGADDAV
+RHGRWSRRLETLRLEQVEAPAIALPEHLCVAEALAQADGGRRAVVAVDGAGRPRGVLDHT
+AAAGLTPARRTTTALAAVAVALAPEAVLVRDDVPAAGPDLASRL-------ADPQ-----
+---TPVWVLTDAHGLVRSVVPRETILAAVDATRRP-------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001191.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001191.fa
new file mode 100644
index 0000000000000000000000000000000000000000..48d5a341387306c20aef8a4d5e290f2919ea2955
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001191.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01720
+MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSASDPGAAFTAITQIGTELAVLIYF
+WRDITRIIGRWFQALAGRLPHSDPDVRMGWLIILGSLPIAVLGLLLQDWIDTEFRSLWIT
+ATMLIVFGVLLALADRLGRQAKPLERLTVRDGVLYGFAQALALIPGVSRSGGTITAGLAM
+GYTRSAAARYAFLLAVPAVFASGFYKLFQSLAEPGTQGPYGMGETFLATVIAFVVGYAVI
+AWLMKFITTNSYMPFVWYRIALGLGLFALLGTGVISA
+>KBS0714_MOLHKGIG_01169
+MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSATDPGAAFTAITQLGTELAVLIYF
+WRDITRIIGRWCAAVTGRIPHSDPDARMGWLIIVGSIPIAVLGLLLEDWIDTEFRSLWIT
+ATMLIVFGVLLALADRLGRQTKPLEKLTVRDGVLYGLAQALALIPGVSRSGGTIAAGLAM
+GYTRPAATRYAFLLAVPAVFASGLYKLYTSLTDPGTQGPYGMGETLVATAIAFVVAYAVI
+AWLMRFISTNSYLPFVWYRILLGGVLFALLGAGVISA
+>KD337_NAFOICDF_01618
+MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSAADPGAAFTAITQLGTETAVLIYF
+WKDISRIISRWFQALAGKVPHSDPDVRMGWLIIIGSIPIGVLGLLLQDWIDTEFRSLWIT
+ATMLIVFGVLLALADRKGRQTKPLEKLTLKDGIVYGFAQALALIPGVSRSGGTITAGLAM
+GYTREAAARYAFLLAVPAVFASGLYKVAKVVTEPGQAGPYGMGETILATAIAFVVGYAVI
+AWLMKFITTNSYMPFVWYRIALGLVLFVLLGTGLIAA
+>SA211_MHAAABBN_00888
+MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSATDPGAAFTAITQLGTELAVLIYF
+WRDITRIIGRWCAAVTGRIPHSDPDARMGWLIIVGSIPIAVLGLLLEDWIDTEFRSLWIT
+ATMLIVFGVLLALADRLGRQTKPLEKLTVRDGVLYGLAQALALIPGVSRSGGTIAAGLAM
+GYTRPAATRYAFLLAVPAVFASGLYKLYTSLTDPGTQGPYGMGETLVATAIAFVVAYAVI
+AWLMRFISTNSYLPFVWYRILLGGVLFALLGAGVISA
+>TT9_LFPAFLNI_01119
+MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSATDPGAAFTAITQLGTELAVLIYF
+WRDITRIIGRWCAAVTGRIPHSDPDARMGWLIIVGSIPIAVLGLLLEDWIDTEFRSLWIT
+ATMLIVFGVLLALADRLGRQTKPLEKLTVRDGVLYGLAQALALIPGVSRSGGTIAAGLAM
+GYTRPAATRYAFLLAVPAVFASGLYKLYTSLTDPGTQGPYGMGETLVATAIAFVVAYAVI
+AWLMRFISTNSYLPFVWYRILLGGVLFALLGAGVISA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001193.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001193.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d818466a6e6f569f4ebcf448b13e587f42096513
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001193.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01722
+---MREQLMSSTLDSIARGQKWEYLVITVSPDESLGDARRRLVEHAEYGRWELQRSVHFR
+GGARRYWLRRRVVRVASTLASA
+>KBS0714_MOLHKGIG_01167
+---MREQLMSSTLDAISRGQKWEYLVMTVAAHESLADARRRLVEHAEYGQWELQRSVHYR
+DGARRYWMRRRVMRVASTLQTL
+>KD337_NAFOICDF_01620
+MDGMREQLMSSTLDSIARGEKWEYLVITVAPHESLADARRRLVDHAEYGQWELQRSVHYR
+GGTRRHWMRRRVIRVRSTLQS-
+>SA211_MHAAABBN_00886
+---MREQLMSSTLDAISRGQKWEYLVMTVAAHESLADARRRLVEHAEYGQWELQRSVHYR
+DGARRYWMRRRVMRVASTLQTL
+>TT9_LFPAFLNI_01117
+---MREQLMSSTLDAISRGQKWEYLVMTVAAHESLADARRRLVEHAEYGQWELQRSVHYR
+DGARRYWMRRRVMRVASTLQTV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001194.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001194.fa
new file mode 100644
index 0000000000000000000000000000000000000000..266c699dd7c915e37c6fbc102f781e9c3f4258e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001194.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01723
+MIQNAHDTPVSRPEDRVVEICRDLIRIDTTNRGGNVSVGEPEAAALCARLMEEAGMRPRL
+FESSPGRVSVVGHLPGWDEDAPGLVVHGHTDVVPAEADEWSVDPFGAELKDGMIWGRGAV
+DMKGMDAMVLSVLLHLTRTGRRPRRPLTVAFFADEEAGGVYGARWLVEHHPELFDGCTEA
+ISEVGGFSTEVHGSRAYLVQTAEKGIAWLNLRAEGAPGHGSAPHPDNAVTRLAGAMTRIG
+GHEWPLVYTKTTRALLEQVAEIMGVDFDEQDPTPQLDALGQARSWVAGTLRTSSNPTGMT
+SGYKHNVIPSTATGTVDARLLPGEEEAALATLQELAGPGVSIEPEHRDVALETPFSGDLV
+ELMVASLQAEDPGAEVLPFMLGGGTDNKSLARLGITGYGFAPMRLPADLAFTSLFHGIDE
+RVPVDALEFGCRVLERMLEPR-
+>KBS0714_MOLHKGIG_01166
+MVENIVNPARSRPEDRVVEICRDLIRIDTTNRGGNVSVGEPEAAEYCARLMAEAGMTPRF
+FESAPGRVSVVGHLPGWDPEAPGLVIHGHTDVVPAEADEWSVDPFGAELKDGMIWGRGAV
+DMKGMDAMVLAVLLHLARTGRRPRRPLTVAFFADEEAGGVYGARWVVDHHPEVFDGCTEA
+ISEVGGFSTEVHGSRAYLVQTAEKGLAWLNLTAEGAPGHGSAPHPDNAVTRLAGAMTRIG
+GHEWPLVYTKTTRALLEQVAEIMGVDFDEADPTPQLDALGQARSWVAGTLRTSSNPTGLT
+AGYKHNVIPSSATGTVDVRLIPGEEESALATIAELAGPEVTIAPEHRDVALETPFSGDLV
+ELMIASLQAEDPEAQVLPFMLGGGTDNKSLSRLGITGYGFAPMRLPADLAFTSLFHAIDE
+RVPVDALEFGCRVLERMLEPR-
+>KD337_NAFOICDF_01621
+MDASTPSTAPSTADADVVEICRDLIRIDTTNHGGGRSVGEPEAAELCAAWMRKAGMEPEL
+IESAPGRVSVVGRLEGWDPEAPGLVLHGHTDVVPAEPDEWTVDPFGAEFRDGMIWGRGAV
+DMKGMDAMILSVLVHLARTGRRPRRPVVVAFFSDEEAGGVFGAQWLVAHRPELFAGCTEA
+ISEVGGFSTDVAGTRAYLVQTGEKGLAWLNLRAQGAPGHGSAPHTDNAVTRLAGAMERIG
+RHPWPLTYTKTTRQLLEEVAEITGTPFDERDPTPQLQALGHARDWVAGTLRTSSNPTGLT
+AGYKHNVIPSTATGTVDVRLIPGEEEQTLAELADLAGDGIEISPEHQDTGLEVPFSGDLV
+ERMASALDAEDPGAHVLPFMLGAGTDNKSLHRLGIAGYGFSPLQLPSGLEFTRLFHGIDE
+RVPVESLRFGCRVLEHVLEPRA
+>SA211_MHAAABBN_00885
+MVENIVNPARSRPEDRVVEICRDLIRIDTTNRGGNVSVGEPEAAEYCARLMAEAGMTPRF
+FESAPGRVSVVGHLPGWDPEAPGLVIHGHTDVVPAEADEWSVDPFGAELKDGMIWGRGAV
+DMKGMDAMVLAVLLHLARTGRRPRRPLTVAFFADEEAGGVYGARWVVDHHPEVFDGCTEA
+ISEVGGFSTEVHGSRAYLVQTAEKGLAWLNLTAEGAPGHGSAPHPDNAVTRLAGAMTRIG
+GHEWPLVYTKTTRALLEQVAEIMGVDFDETDPTPQLDALGQARSWVAGTLRTSSNPTGLT
+AGYKHNVIPSSATGTVDVRLIPGEEESALATIAELAGPDVTIAPEHRDVALETPFSGDLV
+ELMIASLQAEDSEAQVLPFMLGGGTDNKSLSRLGITGYGFAPMRLPADLAFTSLFHAIDE
+RVPVDALEFGCRVLERMLEPR-
+>TT9_LFPAFLNI_01116
+MVENIENPARSRPEDRVVEICRDLIRIDTTNRGGNVSVGEPEAAEYCARLMTEAGMTPRF
+FESAPGRVSVVGHLPGWDPEAPGLVIHGHTDVVPAEADEWSVDPFGAELKDGMIWGRGAV
+DMKGMDAMVLAVLLHLARTGRRPRRPLTVAFFADEEAGGVYGARWVVDHHPEVFDGCTEA
+ISEVGGFSTEVHGSRAYLVQTAEKGLAWLNLTAEGAPGHGSAPHPDNAVTRLAGAMTRIG
+GHEWPLVYTKTTRALLEQVAEIMGVDFDETDPTPQLDALGQARSWVAGTLRTSSNPTGLT
+AGYKHNVIPSSATGTVDVRLIPGEEESALATIAELAGPDVTIAPEHRDVALETPFSGDLV
+ELMIASLQAEDPEAQVLPFMLGGGTDNKSLSRLGITGYGFAPMRLPADLAFTSLFHGIDE
+RVPVDALEFGCRVLERMLEPR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001195.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001195.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bf869cd2ed585b86278b68e974df64856b562678
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001195.fa
@@ -0,0 +1,80 @@
+>AS2_ACLBLIBL_01726
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----------------------------------------------------------------------------MSR
+RFLSALLVHVPDIPEFASLPAAEQDELRAAGAAVQARLERSGTIDRPAVAAALWPALRRVHAVPRSPEREAAYAAFRAEA
+GPGLDDFALWSALRTA---DDVPGPDLADPAWAPGGEHAERVRTERADEVDLHRWVQWVAAEQLAAVQQRARAAGMRMGV
+MVDLAVGATRETADAWMLGDVLVPGMSVGAPPEVFNQLGQDWSQHPWHPRRLAETGYAAFRDMLRTVLRDAGGIRMDHVL
+GLFRLWWIPVGAGATQGAYVEYDHEAMLAVLTLEAERAGAVVVGEDLGTFEPWVQRRLAEAGVLGTSILWFEQRDGEPLP
+PERYRRLAMAAVNTHDLPPTAGYLEGVQVDLRERLGLYTVDVAQERRRSADEVEAFLGAAVRRGLLDARDARVRPDDAAQ
+REAQTVALHRLLAQAPSALHSVSLVDAVGERRIQNQPGTTQDQYPNWTLPLGDREGRMLRVEDLASSASAARLFDAVEEE
+LRASVPVGIGVSLHTSPLAQPGRGDAGGLNVYVRHAALALARRGVRMILLTRAEEPVGPESARVTRLEAGGEAPAVTVVE
+LAVGPAAPLPKAELAALTDEFTAAARAWLASDAVPGGPVLAPQGLDGRGPGAPAAPPVAFVHGHYWLSAPTAAALAAATG
+APHLHTMHTTAAVKMLEDPELREPGARIEAEGAVVREADLLVVNSPAEVVDLREALGVPRARTRVLPPGADLATFTPEGP
+ALWPGDPDDDG-ALRVLFAGRIQRHKGPHLLVEALAVLRERAGGPGADPGVRLHVNGAPSGEEGLDLPGLALERGVADLV
+TFSEPVRAEELAAQLRAADVVAMPSASETYGLVALEAQACGTPVLAHRVGGLVHAVIDGASGRLVTEGSPEAWADALAAV
+LADRPAWDALAAGAVRHAAGHSWEAYADGLLEAAAGLARRQDG--A
+>KBS0714_MOLHKGIG_01164
+MALEAPALLHRLARAHGVQPEYVGQDGSAQTVPDEALVKVLAALGVSVRPDGVAALAEAVEEAETAPWRDVLPPTVAARS
+GHRLSVPCHVAAGEPVVARVRTEDGRTLEVSVSEPVSEVRLVDGVERERVHVQIPADLAPGWHRLEVTSGSGSTASAVLV
+CAPTRLSTARPFLERRGWGAAAQGYSVTSADSWGIGDAADMASLAEIVARHGADFLLLHPLHAIEPGPHPADSPYSPVSR
+RFLSALVVHVPSIPEFADLPAAEQAELRSAGARVQAELERTGRIDRAAVAAVLWPALRRVHEVPRSPEREAAYARFRAEA
+GPGLDDFALWSVLRLD---GDGTGPDLADPAWAPGGVEAERVRVERATDVDLHRWVQWIAAEQLAGVQERARAAGMRMGV
+MVDLAVGATRETADAWMLGDVLVPTMSVGAPPELFNQLGQDWSQHPWHPRRLAETGYAAFRDMLRTVLRGAGGIRMDHVL
+GLFRLWWIPEGAGATQGAYVEYDHEAMLAVLTLEAERAGVVVVGEDLGTFEPWVQRRLAEAGVLGTSILWFEQEDGEPTP
+PERYRRLAMAAVNTHDLPPTAGYLEGVQVDLRERLGLYTVDVAQERRRSAEEVRAFLAAAARRGLLAEADVDVPDAGPEV
+RERQIVALHRLLAQAPSALHSVALVDAVGERRIQNQPGTLQDQYPNWTVPLGDGAGRMVSVEDLADSASAARLFDAVDAE
+LRASVPVGIGVSLHTSPLAQPGRGDAGGMNVYVRQAAVALARRGVRMILLTRAEEPVGADGARVRMLDAGGQAPPVTVVD
+LAAGPSAPVPKEELAGLGAEFTRAALDWLASDAVPGGPVL----------GGADAPPVAFVHGHYWLSGSTAAALARAAH
+APYLQTMHTTAAAKMLEDPELREPAARIEAEREVAERADLLVVNSAAEVADLRELLDVPRARTRVLPPGADLETFTPEGA
+AQWPGAPEDDG-ALRVLFAGRVQRHKGPHLLVAALGVLRERAGGAGADPGVRLHVNGAASGDDELDLAGLAAREGVADLV
+TFSGPVPAPALAAQFRAADVVAMPSASETYGLVALEAQACGTPVLAHRVGGLVYAVLDGVSGRHVTAGTPEAWADALAEI
+LADRDAWAALGTGAVRHAAGHSWEAYADGLLEAVTAVPRRSPGLDA
+>KD337_NAFOICDF_01623
+MPENARALLRRLARAHGVQTEYVGQDGSDQSVADETLVRVLSALGVEVDADGVAGLTEALDAVDAAPWRDVLPPTVVARQ
+GHRSTVPVHVARGAAVQVRLVQEDGRVVDLPTREAVGATLVVDGQERVRHDLDLPEDLPLGWHRLEAVSETGSVARATLV
+SAPAALTTAAPFLARRGWGVAAQGYSVTSSGSWGVGDAHDAGSLAELAAPHGADFLLLHPLHAVEPAGAPADSPYSPVSR
+RFLSAFLIRVTDIPEFAALPAEEQKRLAAAGRAVQEAVLTGGTIDRAAVAEVLWPALEAVWRAPRTSERDADYAAFRDRQ
+GTGLDDFAAWSVLRRDALRAGVAGPDPTDPAAGPGSDGVRRVRAERADELDFHRWVQWIADEQLAAAQERAREAGMRMGV
+MLDLAVGATRGSADAWMLGDVLVPSMSVGAPPEVFNQLGQDWSQHPWHPRRLAETGYAAFRDMLRTLMAHAGGLRMDHVL
+GLFRLWWIPEGLGAPQGAYVHYDHEAMLAVLTLEAERAGVVVIGEDLGTFEPWVQRRLAEAGVLGTSILWFEQEDGVPTP
+PEQYRRLCMAAVNTHDLPPTAGYLEGVHIDLRERLGLYTADVAAERRRSAAEVEAFLGAARKRGLLEATG----PDGVET
+VEDRVVALHRLLAQAPSALHCVGLVDAVGERRIQNQPGTLQEQYPNWTVPLGDADGRVLTVEDLAGTASVSRLFDAVAAE
+LDASVPVGIAVAFHTSPLAQPGQGDAGGLNVYVRHSARALARLGVRMLLLTRAESPVGPSGVRVTTLPQGEGAPDVTVVE
+LAAGPQEPVAKEELPAHREAFTAAAREWLASADVPGGPLL--------GAAGAAAARVRFVHAHYWLSGDTAAAVADDLG
+APRVQTMHTTGAVKSAGDPGHPEPAERLAAEADLVRRADLLVVNSPAESRDLQELLDVDRDRVRVLPPGVDLESFTPEGP
+SRWPGGDAVGADALRVLFAGRVQEHKGPHVLVAALAELRARA--ADGDPRVVLHVNGEQSGPADLDLPALAARLGVADLV
+TFSPPVPPVELAAQMRAADVVALPSASETYGLVAVEAQAAGTPVLAHRVGGLVHAVQDGVSGRLVIPNTASAWADALAAV
+REDRQAWDAMAPAAVRHARAHAWSGWAEGLLDAVAGLPR------P
+>SA211_MHAAABBN_00883
+MALEAPALLHRLARAHGVQPEYVGQDGSAQTVPDEALVKVLAALGVSVRPDGVAALAEAVEEAETAPWRDVLPPTVAARS
+GHRLSVPCHVAAGEPVVARVRTEDGRTLEVSVSEPVSEVRLVDGVERERVHVQIPADLAPGWHRLEVTSGSGSTASAVLV
+CAPTRLSTARPFLERRGWGAAAQGYSVTSADSWGIGDAADMASLAEIVARHGADFLLLHPLHAIEPGPHPADSPYSPVSR
+RFLSALVVHVPSIPEFADLPAAEQAELRSAGARVQAELERTGRIDRAAVAAVLWPALRRVHEVPRSPEREAAYARFRAEA
+GPGLDDFALWSVLRLD---GDGTGPDLADPAWAPGGVEAERVRVERATDVDLHRWVQWIAAEQLAGVQERARAAGMRMGV
+MVDLAVGATRETADAWMLGDVLVPTMSVGAPPELFNQLGQDWSQHPWHPRRLAETGYAAFRDMLRTVLRGAGGIRMDHVL
+GLFRLWWIPEGAGATQGAYVEYDHEAMLAVLTLEAERAGVVVVGEDLGTFEPWVQRRLAEAGVLGTSILWFEQEDGEPTP
+PERYRRLAMAAVNTHDLPPTAGYLEGVQVDLRERLGLYTVDVAQERRRSAEEVRAFLAAAARRGLLAEADVDVPDAGPEV
+RERQIVALHRLLAQAPSALHSVALVDAVGERRIQNQPGTLQDQYPNWTVPLGDGAGRMVSVEDLADSASAARLFDAVDAE
+LRASVPVGIGVSLHTSPLAQPGRGDAGGMNVYVRQAAVALARRGVRMILLTRAEEPVGADGARVRMLDAGGQAPPVTVVD
+LAAGPSAPVPKEELAGLGAEFTRAALDWLASDAVPGGPVL----------GGADAPPVAFVHGHYWLSGSTAAALARAAH
+APYLQTMHTTAAAKMLEDPELREPAARIEAEREVAERADLLVVNSAAEVADLRELLDVPRARTRVLPPGADLETFTPEGA
+AQWPGAPEDDG-ALRVLFAGRVQRHKGPHLLVAALGVLRERAGGAGADPGVRLHVNGAASGDDELDLAGLAAREGVADLV
+TFSGPVPAPALAAQFRAADVVAMPSASETYGLVALEAQACGTPVLAHRVGGLVYAVLDGVSGRHVTAGTPEAWADALAEI
+LADRDAWAALGTGAVRHAAGHSWEAYADGLLEAVTAVPRRSPGLDA
+>TT9_LFPAFLNI_01114
+MALEAPALLHRLARAHGVQPEYVGQDGSAQTVPDEALVKVLAALGVSVRPDGVAALAEALEEAETAPWRDVLPPTVAARS
+GHRLSVPCHVAAGEPVVARVRTEDGRTLEVSVSEPVSEVRLVDGVERERVHVQIPADLAPGWHRLEVTSGSGSTASAVLV
+CAPTRLSTARPFLERRGWGAAAQGYSVTSADSWGIGDAADMASLAEIVARHGADFLLLHPLHAIEPGPHPADSPYSPVSR
+RFLSALVVHVPSIPEFADLPAAEQAELRSAGARVQAELERTGRIDRAAVAAVLWPALRRVHEVPRSPEREAAYARFRAEA
+GPGLDDFALWSVLRLD---GDGTGPDLADPAWAPGGVEAERVRVERATDVDLHRWVQWIAAEQLAGVQERARAAGMRMGV
+MVDLAVGATRETADAWMLGDVLVPTMSVGAPPELFNQLGQDWSQHPWHPRRLAETGYAAFRDMLRTVLRGAGGIRMDHVL
+GLFRLWWIPEGAGATQGAYVEYDHEAMLAVLTLEAERAGVVVVGEDLGTFEPWVQRRLAEAGVLGTSILWFEQEDGEPTP
+PERYRRLAMAAVNTHDLPPTAGYLEGVQVDLRERLGLYTVDVAQERRRSAEEVRAFLAAAARRGLLAEADVDVPDAGPEV
+RERQIVALHRLLAQAPSALHSVALVDAVGERRIQNQPGTLQDQYPNWTVPLGDGAGRMVSVEDLADSASAARLFDAVDAE
+LRASVPVGIGVSLHTSPLAQPGRGDAGGMNVYVRQAAVALARRGVRMILLTRAEEPVGADGARVRMLDAGGQAPPVTVVD
+LAAGPSAPVPKEELAGLGAEFTRAALDWLASDAVPGGPVL----------GGADAPPVAFVHGHYWLSGSTAAALARAAH
+APYLQTMHTTAAAKMLEDPELREPAARIEAEREVAERADLLVVNSAAEVADLRELLDVPRARTRVLPPGADLETFTPEGA
+AQWPGAPEDDG-ALRVLFAGRVQRHKGPHLLVAALGVLRERAGGAGADPGVRLHVNGAASGDDELDLAGLAAREGVADLV
+TFSGPVPAPALAAQFRAADVVAMPSASETYGLVALEAQACGTPVLAHRVGGLVYAVLDGVSGRHVTAGTPEAWADALAEI
+LADRDAWAALGTGAVRHAAGHSWEAYADGLLEAVAAVPRRSPGLDA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001197.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001197.fa
new file mode 100644
index 0000000000000000000000000000000000000000..702ab521bdbec89a6fa853456e8e20202c235979
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001197.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01728
+--MTDRYGAFAASALGRRLTGALGLPQPVELRRHAPGEPVLHGSVLVLGAGPAAADARTL
+LASWGLEVADAPREGARLAGVVACFDDAAAPGDLGETVLQIGGALRSLGASSRVVTVSVD
+PEAAAEPAVRAARQGVQGLTRSLAQEMRRGGTANGIVLGEGVPLTAPGAAGALAFLLSGR
+SAYVSGQFLPVTTRDGATPADA-ARPLADKVAVVTGAARGIGAAIVRTLARDGATVVGVD
+VPVAGESLAAVVNEVGGTALALDITAPEAGARILEHCRARHGRMDVVVHNAGITRDRMLA
+NMDAARWDSVIAVNTASQLAMNEAFLADDAREVTGEGLRIIGLASISGIAGNRGQTNYAA
+SKAGVIGLTAASAPALAARGGTINAVAPGFIETEMTAKIPLATREVGRRLNSLQQGGLPQ
+DVAEAVAWFASDAAGGTNGATLRVCGQSKLGA
+>KBS0714_MOLHKGIG_01162
+--MTDRYGTFVASPLGRRLTGALGLPQPVELRRHTPGDPVLPGSVLVLGATPAAADARTL
+LASWGLEVADAPREGARHAAIVACFDGVATPADLGAVALEIGGALRSLGSSSRVVTVFED
+PEAATDPTLRAARQGVTGLTRSIAHEMRRGGTANGLVLGEGVPLTAPGAAGALAFLLSGR
+AAYVSGQFVPVATADGAVPADA-ARPLAGKVAVVTGAARGIGAAIVRTLARDGAVVVGVD
+VPAAGEALAEVVNEVGGTALALDITAPDAGARILEHCRTRHGRMDAVVHNAGITRDRMLA
+NMDAARWDSVLAVNTTAQLAMNEAFLAEDARDVAGQGLRIVGLASISGIAGNRGQTNYAA
+SKAGVIGLTAASAPVLAARGGTINAVAPGFIETEMTAKIPLATREVGRRLNALQQGGLPQ
+DVAETVAWLASDAAGGTNGATLRVCGQSKLGA
+>KD337_NAFOICDF_01625
+MPANDPYGDLVRTRLGRRLTGALGLPQPAELRRHTAGDPAVRGTVLVLGATSAADAARAL
+VTAEGARAVAHPAEGERLAAVIACFDGVAAPGDLSDTALALGGALRSLEPSAHVVTVVED
+PEEAEVPAVRAARAGVMGLTRSLAHEMRRGGVANGLLLRGGARLGDAGPAGALRFLLSGR
+AAFVSGQFLPAAAGAGSAPASADARPLEGRVAVVTGAARGIGAAILRTLARDGATVVGVD
+LPAAGEDLVRIVNELGGTALPLDITAPDAGARIVEHARARHGRLDVVVHNAGITKDKLLA
+NMDAARWDAVLAVNTASQLAINEVLLSAEAADVVSPDIRIVGLASISGIAGNRGQTNYAA
+SKAGVIGLTAATAPDLAARGGGITAVAPGFIETEMTAKIPLVTRELGRRVNSLQQGGRPE
+DVAEAVAFLSSPAASGINGTTLRVCGQSMLGA
+>SA211_MHAAABBN_00881
+--MTDRYGTFVASPLGRRLTGALGLPQPVELRRHTPGDPVLPGSVLVLGATPAAADARTL
+LASWGLEVADAPREGARHAAIVACFDGVATPADLGAVALEIGGALRSLGSSSRVVTVFED
+PEAATDPALRAARQGVTGLTRSIAHEMRRGGTANGLVLGEGVPLTAPGAAGALAFLLSGR
+AAYVSGQFVPVSTADGAVPADA-ARPLAGKVAVVTGAARGIGAAIVRTLARDGAVVVGVD
+VPAAGETLAKVVNEVGGTALALDITAPDAGARILEHCRTRHGRMDVVVHNAGITRDRMLA
+NMDAARWDSVLAVNTTAQLAMNEAFLAEDARDVAGHGLRIVGLASISGIAGNRGQTNYAA
+SKAGVIGLTAASAPVLAARGGTINAVAPGFIETEMTAKIPLATREVGRRLNALQQGGLPQ
+DVAETVAWLASDAAGGTNGATLRVCGQSKLGA
+>TT9_LFPAFLNI_01112
+--MTDRYGTFVASPLGRRLTGALGLPQPVELRRHTPGDPVLPGSVLVLGATPAAADARTL
+LASWGLEVADAPREGARHAAIVACFDGVATPADLGAVALEIGGALRSLGSSSRVVTVFED
+PESATDPTLRAARQGVTGLTRSIAHEMRRGGTANGLVLGEGVPLTAPGAAGALAFLLSGR
+AAYVSGQFVPVATADGAVPADA-ARPLAGKVAVVTGAARGIGAAIVRTLARDGAVVVGVD
+VPAAGEALAEVVNEVGGTALALDITAPDAGARILEHCRTRHGRMDVVVHNAGITRDRMLA
+NMDAARWDSVLAVNTTAQLAMNEAFLAEDARDVAGQGLRIVGLASISGIAGNRGQTNYAA
+SKAGVIGLTAASAPVLAARGGTINAVAPGFIETEMTAKIPLATREVGRRLNALQQGGLPQ
+DVAETVAWLASDAAGGTNGATLRVCGQSKLGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001198.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001198.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9375519bb3f2890f4d1a749ad3b52e084e49732a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001198.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01729
+MTQ-----PETTARPAVAGGALRPAVVVGGNRIPFARANTAYAEVGNQEMLTAALEGLVA
+RFGLQGERVGQVSAGAVLKHPRNFNLTREAVLGSALASDTPAADLQVACATGMEAIGTLA
+DKIRLGRIDSAIGGGVDSISDAPVSLSDGARRALLRLNAAKTMKDRLAALKDLRPGHLAP
+EPAGAGEPRTGMSMGDHQALTTHRWGITRQAQDELAAASHRNLGAAYAAGYMDDLVTPFR
+GLDRDNNLRPDSTPEKLAGLKPAFGRHLGEEATMTAGNSTPLTDGASAVLLSSEDWAAER
+GLPVLAEFVDVENAAVDFVDGDEGLLMSPAYAVPRLLARHGLTLQDLDFVEIHEAFAGTV
+LSTLAAWEDEEYCRERLGLPGALGSVDRAKLNVHGSSLAAGHPFAATGGRIVALLSKMLH
+EKGEGSLGLVSVCAAGGQGIVALLRGR
+>KBS0714_MOLHKGIG_01161
+MTHHETPASETASRPAVAGGALRPAVILGGNRIPFARANTAYAEVGNQEMLTATLDGLVA
+RFGLQGERLGQVTAGAVLKHPRNFNLTREAVLGSALSAATPAADVQVACATGMEALGTLA
+NKIRLGQLDSAIGGGVDSISDAPVSLSDGARRVLLQLNTAKTMKDRLRALAQLRPGQLVP
+EPAGAGEPRTGMSMGEHQALTTHKWGITRQTQDELAAASHRNLGAAYAAGYMDDLVTPFH
+GLARDNNLRPDSTPEKLAGLKPAFGRQLGDEATMTAANSTPLTDGASAVLLSSEEWAAER
+GLPVLAEFVDMENAAVDFVDGHEGLLMAPAYAVPRLLARHGLTLDDLDFVEIHEAFAGTV
+LSTLAAWEDEEYCRERLGLPGALGSVDRARLNVHGSSLAAGHPFAATGGRIVALLAKMLH
+EKGEGSLGLISVCAAGGQGIVALLRGR
+>KD337_NAFOICDF_01626
+MSTESPRVPAETARPAIAGGELRPAVVVGSNRIPFARAFTAYAEVGEQEMLTAAIDGLVA
+RLGLQGERLGQVSAGAVMKHPKDFNLTREAVMGSALSSETPAADIQVACATGMEAIGTLA
+DKIRLGRIDSAIGGGVDSISASPMTVSESARRVLLQLNSAKTVKDRLKALSSLRPGQLVP
+EPAAAGEPRTGMSMGEHQALTTHQWGITRQAQDELAAASHRNLGASYASGYQDDLVTPFR
+GLAKDNNLRPDSTVEKLAGLKPAFGRHLGDEATMTAGNSTPLTDGASAVLLSSEDWAVQR
+NLPVLAEIVDMENAAVDFVDGEDGLLMSPVYAVPRLLARHGLTLDDLDFVEIHEAFAGTV
+LATLAAWEDEEFGRTRLGLPGAYGSVDRAKLNVNGSSLAAGHPFAATGGRIVGLLSKMLH
+EKGEGSLGLVSVCAAGGQGIVALLRGR
+>SA211_MHAAABBN_00880
+MTHHETPASETASRPAVAGGALRPAVILGGNRIPFARANTAYAEVGNQEMLTATLDGLVA
+RFGLQGERLGQVTAGAVLKHPRNFNLTREAVLGSALSAATPAADVQVACATGMEAVGTLA
+NKIRLGQLDSAIGGGVDSISDAPVSLSDGARRVLLQLTTAKTMKDRLRALAQLRPGQLVP
+EPAGAGEPRTGMSMGEHQALTTHKWGITRQAQDELAAASHRNLGAAYAAGYMDDLVTPFH
+GLARDNNLRPDSTPEKLAGLKPVFGRQLGDEATMTAGNSTPLTDGASAVLLSSEEWAAER
+GLPVLAEFVDMENAAVDFVDGHEGLLMAPAYAVPRLLARHGLTLDDLDFVEIHEAFAGTV
+LSTLAAWEDEEYCRERLGLPGALGSVDRARLNVHGSSLAAGHPFAATGGRIVALLAKMLH
+EKGEGSLGLISVCAAGGQGIVALLRGR
+>TT9_LFPAFLNI_01111
+MTHHETPASETASRPAVAGGALRPAVILGGNRIPFARANTAYAEVGNQEMLTATLDGLIA
+RFGLQGERLGQVTAGAVLKHPRNFNLTREAVLGSALSAATPAADVQVACATGMEALGTLA
+NKIRLGQLDSAIGGGVDSISDAPVSLSDGARRVLLQLNTAKTTKDRLRALAQLRPGQLVP
+EPAGAGEPRTGMSMGEHQALTTHKWGITRQAQDELAAASHRNLGAAYAAGYMDDLVTPFH
+GLARDNNLRPDSTPEKLAGLKPAFGRQLGDEATMTAANSTPLTDGASAVLLSSEEWAAER
+GLPVLAEFVDMENAAVDFVDGHEGLLMAPAYAVPRLLARHGLTLDDLDFVEIHEAFAGTV
+LSTLAAWEDEEYCRERLGLPGALGSVDRARLNVHGSSLAAGHPFAATGGRIVALLAKMLH
+EKGEGSLGLISVCAAGGQGIVALLRGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001199.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001199.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b04c8733f7437ad8d92071793059120420bfcf35
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001199.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_01730
+MT--VHEKLAPQSPTHTTE-VPSDVAEIAPEHPEPGSLDSAALQDALLGAWAEDRRTARALVRDPRLHRDPLLGMDEHRE
+RVLGQLGVLVENGAVHRMFPKEFGGDDNHGGNIAAFADLVLGDPSLQIKAGVQWGLFAAAILHLGTEEHHRRWLPGAMDL
+SVPGAFAMTEIGHGSDVASIGTTATYDEAAGEFVIHTPFKGAWKDYLGNAALHGRAATVFAQLITKGVNHGVHCFYVPIR
+DEDGAFLPGVGGEDDGLKGGLNGIDNGRLHFDQVRVPRTNLLNRYGDVAEDGTYSSPIESPGRRFFTMLGTLVQGRVSLS
+LAATTASFLGLHGAIAYGEQRRQFNASDPEREEVLLDYQNHQRRLVDRLARAYADAFASNELLERFDGVFSGRADSDADR
+QELETLAAAIKPLATWNALDTLQETREACGGAGFMA-RNRIPQMRADLDVYVTFEGDNNVLLQLVGKRLLTDYSHEFGRL
+NVGAVSRYVVAQASDAIHRAGLHKAVQSVSDGGSERRSANWFKDPEVQRDLLTDRVRAKTADIAGTLAGVRGKTQAEQAA
+AFNTRQHELIEVARNQGELLQWEAFTRAVQATRDESTRTVLTWLRDLFALRVLEEDLGWLVAHGRLSSQRARSLRGYVNR
+LAERLRPFALELVEAFGLEPEHLRMDIATQAEAERQAEAHAWFEARRAAGEEPEDEKAVRAREKAARGRRG
+>KBS0714_MOLHKGIG_01159
+MT--VHEKLAPQSSTPSTE-VPSDVAEIAPERPTPGSLDAAALEEALLGRWAAERRESRELVKDPALWRDPLLGMDEHRA
+RVLRQLGVLVERNAVHRAFPREFGGEDNHGGNLAAFGDLVLADPSLQIKAGVQWGLFSSAILHLGTAEHHRRWLPGAMDL
+SVPGAFAMTEIGHGSDVASIATTATYDEATQEFVIHTPFKGAWKDYLGNAALHGRAATVFAQLITRGVNHGVHCFYVPIR
+DEEGAFLPGVGGEDDGLKGGLNGIDNGRLHFTQVRIPRTNLLNRYGDVAEDGTYSSPIASPGRRFFTMLGTLVQGRVSLS
+LAATTASFLGLHGALAYAEQRRQFKASDPQREEVLLDYQNHQRRLIDRLARAYADAFASNELVEKFDDVFSGRSDTDVDR
+QELETLAAAVKPLTTWHALDTLQEAREACGGAGFLA-ENRVAQMRADLDVYVTFEGDNTVLLQFVGKRLLTDYSKEFGRL
+NVGAVSRYVVHQASDALHRAGLHKAVQSVADGGSERRSANWFKDPAVQHELLTERVRAKTADIAGTLSGARGKGQAAQAE
+AFNTRQHELIEAARNHGELLQWEAFTRALEGITDETTKTVLTWLRDLFALRLIEDDLGWFVAHGRVSSQRARALRGYVNR
+LAERLRPFALELVESFGLEPEHLRMAVATDAETQRQEEAHAWFTARRAAGEEPEDEKAVRAREKAARGRRG
+>KD337_NAFOICDF_01628
+MTDIRTDAASAAEALPATDAVPHDVAEIAPEDPTPGALDAAALQDLLLGSWAEAHRTARGLVKDERLHRDPALGMDEHRA
+RVLDQLGILVEEKAVHRAFPADLGGQDDHGGSIAAFANLVLADPSLQIKAGVQWGLFSSAILHLGTREHHEKWLPGAMDL
+SMPGAFAMTEIGHGSDVASIATTATYDEATQEFVIHTPFKAAWKDYLGNAALHGRAATVFAQLITKGVNHGVHCFYVPIR
+DESGAFLPGVGGEDDGLKGGLNGIDNGRLHFDHVRVPRTHLLNRYGDVAEDGTYSSDIASPGRRFFTMIGTLVQGRVSLS
+LAASIASFMGLHGALAYAEQRRQFGGPEGS-ETLLLDYQNHQRRLIDRLARTYADLFAANELLEKFDHVFSGAGDTDKDR
+EELETLAAAIKPLTTWNALDTLQEAREATGGMGFMAGRNRLPHLRADLDIFVTFEGDNNILLQLVGKRLLTDYSAEFGKL
+NVGAVSRWAASEASDALHRVGLHKAAQSVHDRGDQRRAANWFKDPQVQRDLLTDRVRTRVADIASTLGSARGKSKAEQAA
+AFNSRQHELIEVARHHGELLQWEAFTRQVESLPAGQTRTVLTWLRDLFALRLIEDDLGWLVAHGRVSSARARVLRGYVNR
+LAERLRPFALELVEAFGLEPEHLRMEIATDAESVRQQEAADWFAARRAAGEEPVHEKTLHAGKR-------
+>SA211_MHAAABBN_00878
+MT--VHEKLAPQSSTPSTE-VPSDVAEIAPERPTPGSLDAAALEEALLGRWAAERRESRELVKDPALWRDPLLGMDEHRA
+RVLRQLGVLVERNAVHRAFPREFGGEDNHGGNLAAFGDLVLADPSLQIKAGVQWGLFSSAILHLGTAEHHRRWLPGAMDL
+SVPGAFAMTEIGHGSDVASIATTATYDEATQEFVIHTPFKGAWKDYLGNAALHGRAATVFAQLITRGVNHGVHCFYVPIR
+DEEGAFLPGVGGEDDGLKGGLNGIDNGRLHFTQVRIPRTNLLNRYGDVAEDGTYSSPIASPGRRFFTMLGTLVQGRVSLS
+LAATTASFLGLHGALAYAEQRRQFKASDPQREEVLLDYQNHQRRLIDRLARAYADAFASNELVEKFDDVFSGRSDTDVDR
+QELETLAAAVKPLTTWHALDTLQEAREACGGAGFLA-ENRVAQMRADLDVYVTFEGDNTVLLQLVGKRLLTDYSKEFGRL
+NVGAVSRYVVHQASDALHRAGLHKAVQSVADGGSERRSANWFKDPAVQHELLTERVRAKTADIAGTLSGARGKGQAAQAE
+AFNTRQHELIEAARNHGELLQWEAFTRALEGITDETTKTVLTWLRDLFALRLIEDDLGWFVAHGRVSSQRARALRGYVNR
+LAERLRPFALELVESFGLEPEHLRMAVATDAETQRQEEAHAWFTARRAAGEEPEDEKAVRAREKAARGRRG
+>TT9_LFPAFLNI_01109
+MT--VHEKLAPQSSTPSTE-VPSDVAEIAPERPTPGSLDAAALEEALLGRWAAERRESRELVKDPALWRDPLLGMDEHRA
+RVLRQLGVLVERNAVHRAFPREFGGEDNHGGNLAAFGDLVLADPSLQIKAGVQWGLFSSAILHLGTAEHHRRWLPGAMDL
+SVPGAFAMTEIGHGSDVASIATTATYDEATQEFVIHTPFKGAWKDYLGNAALHGRAATVFAQLITRGVNHGVHCFYVPIR
+DEEGAFLPGVGGEDDGLKGGLNGIDNGRLHFTQVRIPRTNLLNRYGDVAEDGTYSSPIASPGRRFFTMLGTLVQGRVSLS
+LAATTASFLGLHGALAYAEQRRQFKASDPQREEVLLDYQNHQRRLIDRLARAYADAFASNELVEKFDDVFSGRSDTDVDR
+QELETLAAAVKPLTTWHALDTLQEAREACGGAGFLA-ENRVAQMRADLDVYVTFEGDNTVLLQLVGKRLLTDYSKEFGRL
+NVGAVSRYVVHQASDALHRAGLHKAVQSVADGGSERRSANWFKDPAVQHELLTERVRAKTADIAGTLSGARGKGQAAQAE
+AFNTRQHELIEAARNHGELLQWEAFTRALEGITDETTKTVLTWLRDLFALRLIEDDLGWFVAHGRVSSQRARALRGYVNR
+LAERLRPFALELVESFGLEPEHLRMAVATDAETQRQEEAHAWFTARRAAGEEPEDEKAVRAREKAARGRRG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001200.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001200.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4ffb37b38bba188e7a26c964596b40b2983ddc8a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001200.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01731
+MRIDIVSKEFPPSIYGGAGVHVAELTRVLASRADVRVHAFGEPRDPDYHGARVLTYPNPP
+GFDAANGAVQTLATDLTILGDLEGADVIHSHTWYANMAGHLGKLMHGVPHVLSAHSLEPL
+RPWKAEQLGGGYALSSWAEKTAYLGADAVIAVSDGMRRDILACYPEVDPEKVHTVHNGID
+TEAWTPQTETDALEKYGIDPTRPSVAFVGRITRQKGVPHLLRAALRLPEDVQLVLCVGAP
+DTPELAHEVNGLIAELRRTREGVVVIEGMIPRREVTQILSAATVFACPSVYEPLGIVNLE
+AMACGTAVVASAVGGIPEVVQDGETGLLVPIEQVADGTGAPADEDAFAADFAAALTRVLE
+DPERATAMGEAGRARAIEHFSWEAIAERTIEVYEAVLR
+>KBS0714_MOLHKGIG_01158
+MRIDIVSKEFPPSIYGGAGVHVAELTRVLASRADVRVHAFGAPRDPDYHGARVLTYPNPP
+GFDAANGAVQTLATDLTILGDLEGADVIHSHTWYANLAGHLGKLLHQTPHVLSAHSLEPL
+RPWKAEQLGGGYALSSWAERTAYLGADAVIAVSDGMRRDILACYPDVDPAKVHTVHNGID
+TQVWTPQTGTAALEKYGIDPDKPSVAFVGRITRQKGVPHLLRAALRLPEDVQLVLCVGAP
+DTAELAHEVNELISELRRTRQGVVVIEGMIPRHEVMEILTAATVFACPSVYEPLGIVNLE
+AMACGTAVVASAVGGIPEVVQDGETGLLVPFEQVDDGTGAPVDEERFAADFAAALTRVVE
+DPERARAMGEAGRARAIEHFSWETIAERTIEVYEAVLR
+>KD337_NAFOICDF_01629
+MRIDIVTKEFPPTIYGGAGVHVAELTRVLSSRADVHVHAFGGAREPDYHGATVTSYAQPA
+GFESANGAVQTLVTDLDIVGDLDGADVIHSHTWYANMAGHLGGLMHGVPHVLSAHSLEPL
+RPWKAEQLGGGYALSSWAESTAYHGAAAVIAVSEGMRRDILRCYPDVDPAKVHTVHNGID
+TQLWTPQTGTDALTKYGIDPDRPSVAFVGRITRQKGVPHLLRAALQLPEDVQLVLCVGAA
+DTPELAREVEGLIGRLRAEREGVVVVEGMIPRGEVTQILSAATVFACPSIYEPLGIVNLE
+AMACGTAVVASAVGGIPEVVDDGVTGLLVPVEQADDGTGTPVDEEKFAADLAKALSTVLA
+DPERATAMGEAGRARAIEHFSWETIADRTMEVYAAVAR
+>SA211_MHAAABBN_00877
+MRIDIVSKEFPPSIYGGAGVHVAELTRVLASRADVRVHAFGAPRDPDYHGARVLTYPNPP
+GFDAANGAVQTLATDLTILGDLEGADVIHSHTWYANLAGHLGKLLHQTPHVLSAHSLEPL
+RPWKAEQLGGGYALSSWAERTAYLGADAVIAVSDGMRRDILACYPDVDPAKVHTVHNGID
+TQVWTPQTGTAALEKYGIDPDKPSVAFVGRITRQKGVPHLLRAALRLPEDVQLVLCVGAP
+DTAELAHEVNELIAELRRTRQGVVVIEGMIPRHEVMEILTAATVFACPSVYEPLGIVNLE
+AMACGTAVVASAVGGIPEVVQDGETGLLVPFEQVDDGTGAPVDEERFAADFAAALTRVVE
+DPERARAMGEAGRARAIEHFSWETIAERTIEVYEAVLR
+>TT9_LFPAFLNI_01108
+MRIDIVSKEFPPSIYGGAGVHVAELTRVLASRADVRVHAFGAPRDPDYHGARVLTYPNPP
+GFDAANGAVQTLATDLTILGDLEGADVIHSHTWYANLAGHLGKLLHQTPHVLSAHSLEPL
+RPWKAEQLGGGYALSSWAERTAYLGADAVIAVSDGMRRDILACYPDVDPAKVHTVHNGID
+TQVWTPQTGTAALEKYGIDPDKPSVAFVGRITRQKGVPHLLRAALRLPEDVQLVLCVGAP
+DTAELAHEVNELISELRRTRQGVVVIEGMIPRHEVMEILTAATVFACPSVYEPLGIVNLE
+AMACGTAVVASAVGGIPEVVQDGETGLLVPFEQVDDGTGAPVDEERFAADFAAALTRVVE
+DPERARAMGEAGRARAIEHFSWETIAERTIEVYEAVLR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001201.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001201.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d94eaffe337562856dc68b2aecd90971f83b1a4c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001201.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01732
+MVQKKVLSVVLAGGEGKRLMPLTADRAKPAVPFGGTYRLIDFALSNLVNSRYREIVVLTQ
+YKSHSLDRHISETWRMSTLLNNYVASVPAQQRRGKDWFTGSANAIYQSMNLIHDARPDIV
+VVIGADHVYHMDFQQMVDQHIASGAKATVAAVRQPLELASSFGVIETDPQDRTRISAFVE
+KPQTTPGLPDDPTLFLASMGNYVFDTDALVAALNQDEENPESNNDMGGDIIPLFVERGEA
+GVYDFTANEVPGGTAGKHYWRDVGTLDSYYDAHMDLVQPWPEFNLYNRDWPLYTRQSVSP
+PAKLVRSSTRRPGSANDSILSQGVVISGGTVAQSVLSTDVRVANEAWVEQSVLLDSVVIG
+EGAHVRNAILDKNVVVPPGARIGFDRAEDEANGYTVTDSGLTVLAKDQSVPKPH
+>KBS0714_MOLHKGIG_01157
+MVQKKVLSVVLAGGEGKRLMPLTADRAKPAVPFGGTYRLIDFALSNLVNSRYREIVVLTQ
+YKSHSLDRHISETWRMSTLLNNYVASVPAQQRRGKDWFTGSANAIYQSMNLIHDARPDIV
+VVIGADHVYHMDFQQMVDQHIASGAKATVAAVRQPLELASSFGVIETDPQDRTRISAFVE
+KPETTPGLPDDPTQFLASMGNYVFDTDALVAALNQDEENPESNNDMGGDIIPLFVERGEA
+GVYDFTANEVPGGTAGKHYWRDVGTLDSYYDAHMDLVQPWPEFNLYNREWPLYTRQSVSP
+PAKLVRSSTRRPGSANDSILSQGVVISGGTVAQSVLSTDVRVHNEAWVEQSVLLDSVVIG
+EGAHVRNAILDKNVVVPPGARIGFDRAEDEANGYTVTESGLTVLSKGQPVPTPH
+>KD337_NAFOICDF_01630
+MVEKKVLSVVLAGGEGKRLMPLTADRAKPAVPFGGEYRLIDFALSNLVNSRFREIVVLTQ
+YKSHSLDRHISETWRMSTMLNNYVATVPAQQRRGKDWFTGSANAIYQSMNLISDARPDIV
+VVIGADHVYHMDFQQMVDHHVASGAKATVAAVRQPLELADQFGVIETDATDPGRITAFVE
+KPATTPGLADDPAQFLASMGNYVFDTDALVEALNADDANPESNNDMGGDIVPYFVGRGEA
+GVYDFTTNEVPGGTPGKHYWRDVGTLDSYYDAHMDLVQPWPEFNLYNRAWPLYTRQSVSP
+PAKLVRSASRRPGTAGDSILAQGVVISGGTVAQSVLSTDVRVGNEAWVEQSVLLDSVTVG
+EGAHVRNAIIDKNVVIPAGARIGFDRAEDEANGYTVTDSGLTVLSKNQRVPDPR
+>SA211_MHAAABBN_00876
+MVQKKVLSVVLAGGEGKRLMPLTADRAKPAVPFGGTYRLIDFALSNLVNSRYREIVVLTQ
+YKSHSLDRHISETWRMSTLLNNYVASVPAQQRRGKDWFTGSANAIYQSMNLIHDARPDIV
+VVIGADHVYHMDFQQMVDQHIASGAKATVAAVRQPLELASSFGVIETDPQDRTRISAFVE
+KPETTPGLPDDPTQFLASMGNYVFDTDALVAALNQDEENPESNNDMGGDIIPLFVERGEA
+GVYDFTANEVPGGTAGKHYWRDVGTLDSYYDAHMDLVQPWPEFNLYNREWPLYTRQSVSP
+PAKLVRSSTRRPGSANDSILSQGVVISGGTVAQSVLSTDVRVHNEAWVEQSVLLDSVVIG
+EGAHVRNAILDKNVVVPPGARIGFDRAEDEANGYTVTESGLTVLSKGQPVPTPH
+>TT9_LFPAFLNI_01107
+MVQKKVLSVVLAGGEGKRLMPLTADRAKPAVPFGGTYRLIDFALSNLVNSRYREIVVLTQ
+YKSHSLDRHISETWRMSTLLNNYVASVPAQQRRGKDWFTGSANAIYQSMNLIHDARPDIV
+VVIGADHVYHMDFQQMVDQHIASGAKATVAAVRQPLELASSFGVIETDPQDRTRISAFVE
+KPETTPGLPDDPTQFLASMGNYVFDTDALVAALNQDEENPESNNDMGGDIIPLFVERGEA
+GVYDFTANEVPGGTAGKHYWRDVGTLDSYYDAHMDLVQPWPEFNLYNREWPLYTRQSVSP
+PAKLVRSSTRRPGSANDSILSQGVVISGGTVAQSVLSTDVRVHNEAWVEQSVLLDSVVIG
+EGAHVRNAILDKNVVVPPGARIGFDRAEDEANGYTVTESGLTVLSKGQPVPTPH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001207.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001207.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dc5b0b9f564952bac66f4b505342bae1bdd5dedf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001207.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01743
+MSTLRRLVVTADPALLADRTPP--AGVPDDAERLLEDGLLGWRF-----AADEWAAAPEP
+GPGWAVHTLPAAVAEAPVPLVVTDVDSTLIRQEVIELLAAHAGREAEVAAVTERAMRGEL
+DFAASLHARVEALAGLPVGVVDDVVRAIRPTAGALALIEAVTAAGGRVCAVSGGFSQVLA
+PLAQAWGVHAYCANELEVHDGHLTGRVAGDVVDRAAKAAMLRAWAEDAGLSPEQAVGVGD
+GANDIDLLDAAGAGVALCAKPVLREHADVVVDVPSFTPLRWLLGL
+>KBS0714_MOLHKGIG_01149
+MSTLRRLVVTADPALLVTDAPP--AGVPDDAERLTDDGLLGWRF-----AADEWAAAPEP
+GSGWDVLTVPATVAAAPAPLVVTDVDSTLIRQEVIELLAAHAGREAEVAEVTERAMRGEL
+DFAASLHARVEALAGLPVGVVADVVRAIRPTDGALALIEAVTAAGGRVCAVSGGFTQVLA
+PLAEAWGVHAYCANELEVQDGHLTGKVLGDVVDRAAKAAMLRAWAEDAGLTPEQAVGVGD
+GANDIDLLEAAGCGVALCAKPILREHADVVVDVPSFTPLRWLLGL
+>KD337_NAFOICDF_01637
+MTQARHLLYRAVPAGTDSPVAPAWAPLPADAEHLAADGLAGLRWEGSVPSAEEATALPE-
+--DWALASLPQSVAAAPTPLVVTDVDSTLIQQEVIELLAAHTGREAEVAAVTERAMRGEL
+DFAQSLHARVEALAGLPASVVDDVVARVRPTDGAVELIAAVNAAGGRVCAVSGGFTQVLA
+PLAEAWGVHAYCANELEVRDGHLSGKVLGDVVDRAAKAAMLRAWAEDAGLSPEQAVGVGD
+GANDIDLLEVAGCGVALCAKPILREHADVVIDVPSFTPLRWLLGL
+>SA211_MHAAABBN_00868
+MSTLRRLVVTADPALLVTDAPP--AGVPDDAERLTDDGLLGWRF-----AADEWAAAPEP
+GSGWDVLTVPATVAAAPAPLVVTDVDSTLIRQEVVELLAAHAGREAEVAEVTERAMRGEL
+DFAASLHARVEALAGLPVGVVADVVRAIRPTDGALALIEAVTAAGGRVCAVSGGFTQVLA
+PLAEAWGVHAYCANELEVRDGHLTGKVLGDVVDRAAKAAMLRAWAEDAGLTPEQAVGVGD
+GANDIDLLEAAGCGVALCAKPILREHADVVVDVPSFTPLRWLLGL
+>TT9_LFPAFLNI_01099
+MSTLRRLVVTADPALLVTDAPP--AGVPDDAERLTDDGLLGWRF-----AADEWAAAPEP
+GSGWDVLTVPATVAAAPAPLVVTDVDSTLIRQEVVELLAAHAGREAEVAEVTERAMRGEL
+DFAASLHARVEALAGLPVGVVADVVRAIRPTDGALALIEAVTAAGGRVCAVSGGFTQVLA
+PLAEAWGVHAYCANELEVRDGHLTGKVLGDVVDRAAKAAMLRAWAEDAGLTPEQAVGVGD
+GANDIDLLEAAGCGVALCAKPILREHADVVVDVPSFTPLRWLLGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001208.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001208.fa
new file mode 100644
index 0000000000000000000000000000000000000000..29645e4958b5e960a93fc18d4ae80334c30fdeb0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001208.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01744
+MTEKDLTGRGVVVTGSSRGIGAATAELLAARGAGVVVNYRQKAPRANKVVQKIEEAGGRA
+VAVGGDVTSAEDRAALLDAAVESFGSLDVLVLNASGGMESQFGEDYAMKLNRDAQAALAD
+AALERMSAGGQIVFVTSHQAHFIDEVATMDSYEPVARSKRAGEDALRERIPAFEAKGVGF
+AVVSGDMIEGTITATLLDRAEPGAIDARREAAGRLYSVEEFAAEVAALVGRDDLEVGHTE
+LVGGARDFLARGEG
+>KBS0714_MOLHKGIG_01148
+MTEQDLAGRGVVVTGSSRGIGAATAELLAARGAGVVVNYRQKAPRANKVVQRIEDAGGRA
+VAVGGDVTVAEDRAALLDAAVEHFGSLDVLVLNASGGMESQFGEDYALKLNRDAQAALAD
+AALERMGAGGQIVFVTSHQAHFIDEVATMDSYEPVARSKRAGEDALRERIPAFTEKGVGF
+VVVSGDMIEGTITATLLDRAEPGAIEARREAAGKLYSVEEFAAEIASLVGREGLEVGHTE
+LVGGAEDFLGQD--
+>KD337_NAFOICDF_01638
+MTTQDLAGKGVVVTGSSRGIGAETAQLLAARGAGVVVNYRQKAPRANKVVQAIEAARGRA
+VAVGGDVTVAEDRAALLDAAIDNFGSLDVLVLNASGGMESQFGEDYAMTLNRDAQAALAD
+AALERMSAGGQIVFVTSHQAHFIDEVATMDAYEPVARSKRAGEDALRERIPAFEAKGVGF
+VVVSGDMIEGTITATLLNRAEPGAIEARREAAGKLYSVEEFAAEVAALVGRTDLEVGHTE
+LVGGAQDFLGQD--
+>SA211_MHAAABBN_00867
+MTEQDLAGRGVVVTGSSRGIGAATAELLAARGAGVVVNYRQKAPRANKVVQRIEDAGGRA
+VAVGGDVTVAEDRAALLDAAVEHFGSLDVLVLNASGGMESQFGEDYALKLNRDAQAALAD
+AALERMGAGGQIVFVTSHQAHFIDEVATMDSYEPVARSKRAGEDALRERIPAFAEKGVGF
+VVVSGDMIEGTITATLLDRAEPGAIEARREAAGKLYSVEEFAAEIASLVGREDLEVGHTE
+LVGGAEDFLQQN--
+>TT9_LFPAFLNI_01098
+MTEQDLAGRGVVVTGSSRGIGAATAELLAARGAGVVVNYRQKAPRANKVVQRIEDAGGRA
+VAVGGDVTVAEDRAALLDAAVEHFGSLDVLVLNASGGMESQFGEDYALKLNRDAQAALAD
+AALERMGAGGQIVFVTSHQAHFIDEVATMDSYEPVARSKRAGEDALRERIPAFAEKGVGF
+VVVSGDMIEGTITATLLDRAEPGAIEARREAAGKLYSVEEFAAEIASLVGREDLEVGHTE
+LVGGAEDFLQQN--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001209.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001209.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cd6bcc16b76fdee28aa7ed18048640ce75150477
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001209.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01746
+MTSSAAGSRAGRPARAGRSTGPQVQGVTTASAARSEDREARMKVYLVQMLIRTVCFGAAL
+FTTGWWQLLFILGAVALPYVAVVQVNNAGPRQAGSLRAVPAEGPELTARPAD-APGPASP
+VVLTGDVVDDPREVGPRALPPGSPSEGARRLPGRGAA
+>KBS0714_MOLHKGIG_01146
+MTSSAAGSRAGRPARAGRGTTPEVQGVTTAAAGRSADREARMRVYLVQMLVRTACFVAAL
+FTHGWWQLGFILGAVVLPYVAVVRVNNTGPQQAGTLRAVPAQGPALAPRPDD-TAAP-EP
+VVLTGDLVDDPRDRAPRALGRGSSSAGSPGLPGRGGA
+>KD337_NAFOICDF_01640
+MAAIVREPDA-------------VQGVTTAAAPRSADRDARTRVYVVQMAVRTACFIAAL
+FTHGWWQILFILGAVVLPYVAVVRVNNTGPREAGRRRDVARTAPAVPALPAEPSPVPTGP
+VVLVGEVVEDDDPAARRALP-----AGSPGETGRGRP
+>SA211_MHAAABBN_00865
+MTSSAAGSRAGRPARAGRGTTPEVQGVTTAAAGRSADREARMKVYLVQMLLRTACFVAAL
+FTHGWWQLGFILGAVVLPYVAVVRVNNTGPQQAGTLRAVPAQGPALAPRPDD-TAAP-KP
+VVLTGDLVDDPRDRAPRALGRGSSSAGGPGLPGRGAA
+>TT9_LFPAFLNI_01096
+MTSSAAGSRAGRPARAGRGTTPEVQGVTTAAAGRSADREARMKVYLVQMLLRTACFVAAL
+FTHGWWQLGFILGAVVLPYVAVVRVNNTGPQQAGTLHAVPAQGPALAPRPDD-TAAP-KP
+VVLTGDLVDDPRDRAPRALGRGSSSAGGPGLPGRGAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001214.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001214.fa
new file mode 100644
index 0000000000000000000000000000000000000000..02ed1cede9fa70bd2d50783413093deaea55376e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001214.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01752
+MATLQITDLHVQIETENGPKEILKGLSLTIETGQTHAIMGPNGSGKSTLASTIAGHPRYE
+VTSGSITLDGEDVLEMGVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTALDGEAPSLR
+TWTKDVKGAFEALQIDPAFMNRNVNEGFSGGEKKRAEILQLELFKPKFAILDETDSGLDV
+DALRIVSEGVNRAAEQNEMGTLLITHYTRILNYIKPDHVHVLVDGRVAESGGPELAAQLE
+AEGYARFEKAAAGV
+>KBS0714_MOLHKGIG_01140
+MATLQITDLHVQIATENGPKEILKGLSLTIETGETHAIMGPNGSGKSTLASTIAGHPRYE
+VTSGSITLDGEDVLEMGVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTALDGEAPSLR
+TWTKDVKGAFEALQIDPAFMNRNVNEGFSGGEKKRAEILQLELFKPKFAILDETDSGLDV
+DALRIVSEGVNRAQAQNEMGTLLITHYTRILNYIKPDHVHVLVDGRVAESGGPELAEQLE
+AEGYARFEKAAAGA
+>KD337_NAFOICDF_01646
+MATLQITDLHVQIETENGPKEILKGLSLTINTGETHAIMGPNGSGKSTLASTIAGHPRYE
+VTSGSITLDGEDVLEMSVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTAIDGEAPSLR
+TWSKDVKGAFEALQIDPAFMNRNVNEGFSGGEKKRAEILQLELFKPKFAILDETDSGLDV
+DALRIVSEGVNRAAEANEMGTLLITHYTRILNYIKPQHVHVLVDGRVAESGGPELAARLE
+SEGYARFEKAAAEA
+>SA211_MHAAABBN_00859
+MATLQITDLHVQIETENGPKEILKGLSLTIETGETHAIMGPNGSGKSTLASTIAGHPRYE
+VTSGSITLDGEDVLEMSVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTALDGQAPSLR
+TWTKDVKGAFEALQIDPAFMNRNVNEGFSGGEKKRAEILQLELFKPKFAILDETDSGLDV
+DALRIVSEGVNRAQAQNEMGTLLITHYTRILNYIKPDHVHVLVDGRVAESGGPELAEQLE
+AEGYARFEKAAAGA
+>TT9_LFPAFLNI_01090
+MATLQITDLHVQIATENGPKEILKGLSLTIETGETHAIMGPNGSGKSTLASTIAGHPRYE
+VTSGSITLDGEDVLEMGVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTALDGQAPSLR
+TWTKDVKGAFEALQIDPAFMNRNVNEGFSGGEKKRAEILQLELFKPKFAILDETDSGLDV
+DALRIVSEGVNRAQAQNEMGTLLITHYTRILNYIKPDHVHVLVDGRVAESGGPELAEQLE
+AEGYARFEKAAAGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001219.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001219.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f98228d839e1e3b36fe62357727f2e2e8786a1e0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001219.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01757
+MSAPIAPGSAEPRTAGQVPEPGTAPHAGAAPLATRVLRQAAYETGTALRNGEQLLVTVVL
+PLLALVGVHVTGLLDEPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALAT
+TPLGTLGLVAGKALSVVALLLVQVAVIGGVGLALGWRPEAAGILPAVVALALGAAAFTAL
+GLLLAGTARPEATLAAANLLWVLFGAVGGTVFPSRVPGVDLLPSGALGSALRAALVDGAG
+APIPLLVLALWCAVAVAAALRWFRWRP
+>KBS0714_MOLHKGIG_01135
+MSTPVVDHRA---------PAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVL
+PLLALVGVHVTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALAT
+TPLGTLGLVAGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALVALALGAAAFTAL
+GLLLAGTARPEATLAVANLLWVLFGAVGGTVFPARVPGVDLLPSGALGTALRAALLDGAW
+SPVPLLVLTLWGAVAVAAALRWFRWRP
+>KD337_NAFOICDF_01651
+MSAPA--------------APIPASHAGAAPLGARILAQARYETVTALRNGEQLLVTLVL
+PLLALVGVHVTGLLDAPGRNGLDLAVPGVLALAVISAAFTATAISTGFERRYDVLAALAT
+TPLGTGGLVAGKAAAVAAVLLLQTIVIGGVGLALGWSPDPAGIPPAVVALLLGAAAFTAL
+GLLLAGTARPEATLAVANLVWVLLGALGGTVFPSRWAWMDLLPSGALGTALRSALQDGAW
+APSALAVLAAWTVMAVAAALRWFRWRP
+>SA211_MHAAABBN_00854
+MSTPVVDHRA---------PAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVL
+PLLALVGVHVTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALAT
+TPLGTLGLVAGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALVALALGAAAFTAL
+GLLLAGTARPEATLAVANLLWVLFGAVGGTVFPARVPGVDLLPSGALGTALRAALLDGAW
+SPVPLLVLTLWGAVAVAAALRWFRWRP
+>TT9_LFPAFLNI_01085
+MSTPVVDHRA---------PAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVL
+PLLALVGVHVTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALAT
+TPLGTLGLVAGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALVALALGAAAFTAL
+GLLLAGTARPEATLAVANLLWVLFGAVGGTVFPARVPGVGLLPSGALGTALRAALLDGAW
+SPVPLLVLTLWGAVAVAAALRWFRWRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001223.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001223.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bc12e7a4f448c46a3a5c228be27fcdc9289efe9f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001223.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01761
+MSTQQNPNTAALAEAGVSIWLDDLSRKRLDEGTLEELMATRSVTGVTTNPSIFAVALADA
+GSYEGQLRELAAAGADVDEAVTALTTQDVRRAADVLAPVHERTGGADGFVSLEVDPRLAR
+DAEGTARQAQELAAAVDRPNLMVKIPATVEGLAAITDVLAEGISVNVTLIFSLPRYRQVL
+NAWLAGLEKARENGHDLSRIHSVASFFVSRVDTEVDARLRAL---GTPEAEALTGQAALA
+NARLAYRAFEQALDSERWRLLEAAGAPVQRPLWASTGVKDPALPDTLYVTGLVAPRTVTT
+LPEQTLEAVADHGEVAGDTVTGGYAEADALLDAVGAAGVSYQDVVDVLETEGLQKFESAW
+EELLGSVRDGLAAHR
+>KBS0714_MOLHKGIG_01131
+MSTPQNPNTAALAQAGVSIWLDDLSRTRLDEGTLEELIATRSVTGVTTNPSIFAVALADA
+GAYQGQLRDLAAAGASVDEAVVALTTEDVRRAADVLAPVHERTGGADGFVSLEVDPRLAR
+DAAGTVAQARELAAAVDRPNLMVKIPATVEGLSAIADVLGAGISVNVTLIFSLPRYRRVL
+NAWLTGLEKARANGHDVRRLHSVASFFVSRVDTEVDARLRAI---GTPEAEALTGRAAVA
+NARLAYRAFEQALDSERWRLLEAAGAPVQRPLWASTGVKDPALPDTLYVTELVAPHTVTT
+LPEKTLEAVADHGVIAADTVTGAYAEADALLDAVGAAGVSYQDVVDVLETEGLEKFEAAW
+DELLGSVRSGLDAHR
+>KD337_NAFOICDF_01655
+MTTETTPATAALAAAGVSLWLDDLSRTRLNEGSLERLIATRNVTGVTTNPSIFAAALKDA
+GAYEAQLAELAAAGADVDAAVTALTTTDVRRACDLLAPVHQETGGRDGYVSIEVDPRLAR
+DTAGTVAQARELVALVDRPNLMVKIPATVEGLPAITEVLGAGISVNVTLIFSLPRYREVL
+NAWLSGLELARANGHDVSRIHSVASFFVSRVDTDVDAQLRALAEQGRPEAGELTGRAGLA
+NARLAYRAFEQMKDTERWSLLEAAGAPVQRPLWASTGVKDPALADTLYVTALVAPDTVNT
+MPEKTLEAYADHGELTAEPVVGGYAQADADLDAIGELGISYTELVDRLETEGLQKFEAAW
+DELLASVRAGLAAHR
+>SA211_MHAAABBN_00850
+MSTPQNPNTAALAQAGVSIWLDDLSRTRLDEGTLEELIATRSVTGVTTNPSIFAVALADA
+GAYQGQLRDLAAAGASVDEAVVALTTEDVRRAADVLAPVHERTGGADGFVSLEVDPRLAR
+DAAGTVAQARELAAAVDRPNLMVKIPATVEGLSAIADVLGAGISVNVTLIFSLPRYRRVL
+NAWLTGLEKARANGHDVRRLHSVASFFVSRVDTEVDARLRAI---GTPEAEALTGRAAVA
+NARLAYRAFEQALDSERWRLLEAAGAPVQRPLWASTGVKDPALPDTLYVTELVAPHTVTT
+LPEKTLEAVADHGVIAADTVTGAYAEADALLDAVGAAGVSYQDVVDVLETEGLEKFEAAW
+DELLGSVRSGLDAHR
+>TT9_LFPAFLNI_01081
+MSTPQNPNTAALAQAGVSIWLDDLSRTRLDEGTLEELIATRSVTGVTTNPSIFAVALADA
+GAYQGQLRELAAAGASVDEAVVALTTEDVRRAADVLAPVHERTGGADGFVSLEVDPRLAR
+DAAGTVAQARELAAAVDRPNLMVKIPATVEGLSAIADVLGAGISVNVTLIFSLPRYRRVL
+NAWLTGLEKARANGHDVRRLHSVASFFVSRVDTEVDARLRAI---GTPEAEALTGRAAVA
+NARLAYRAFEQALDSERWRLLEAAGAPVQRPLWASTGVKDPALPDTLYVTELVAPHTVTT
+LPEKTLEAVADHGVIAADTVTGAYAEADALLDAVGAAGVSYQDVVDVLETEGLEKFEAAW
+DELLGSVRSGLDAHR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001224.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001224.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a8d5bc97a52b78a48ec96e089ea3712d811a5e97
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001224.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01762
+MSTLGLSATGSALEAIDRHLPTLLEDRVASRLGAQDAGLWGEAAREESARRLGWIDLFEDSRALVRHIDALSRELRAEGV
+DRVVLAGMGGSSLAPEVIAATAGVELEVLDSTDPLQVSRALERDLERTVLVVSSKSGSTVETDSQRRVMEAAFREAGIDP
+RSRLVAVTDPGSPLHAECESAGWRAVFTADPTVGGRFSALTAFGLVPTGLAGVDVAALLDDAEAVLDLLTADDADNPGLQ
+LGAALGGTAPLRDKLVFTDHGSGIDGLPAWAEQLIAESTGKDGTGLLPVVVADGDPETGWDAPDMLQVQLVGE-DAPAAP
+AHGVQVSGSLGAQLLLWEVATAVAGRLLGINPFDQPDVEAAKTAARSLLDAPARERTADRTVDGVELSGPEAVVSAADLA
+GVLRATADLVPENGYLAVHAYLSRHDDAELEEVRADLARLAGRPVTFGWGPRFLHSTGQFHKGGPAVGVFLQVTGDADLD
+VEVPGRPFSLGRLIAAQAAGDARVLVEHGRPVVTLHLPHRAAGIDAIRTAARAR
+>KBS0714_MOLHKGIG_01130
+MSTLGLTATGAALEAIDRHLPALLQDRVASRLGAQDADLWGAPARDEAAKRLGWIDLFEDSRALVPDIAQLTRELRAEGV
+DRVVLAGMGGSSLAPEVIAATAGVELEVLDSTDPLQVSRALERDLERTVLVVSSKSGSTVETDSQRRVVEAAFRDAGIDP
+RTRLVAVTDPGSPLHAACESAGWRAVFTADPTVGGRFSALTAFGLVPTGLAGVDVAALLDDAEAVLDLLIADDEDNPGLQ
+LGAALGGTRPLRDKLVFADHGSGIAGLPAWIEQLIAESTGKDGTGLLPVVVAPGDPETVWDAPDLLQVQLVGE-DDVAAP
+GHGVQVAGSLGAQLLLWEVATAVAGRLLGINPFDQPDVEAAKAAARTLLDGPAAERPADGEVEGVEVSGPASVTSAPDLA
+GVLRATAALVPEGGYLAVHAYLSRHDDAELEELRADLADLVGRPVTFGWGPRFLHSTGQFHKGGPAVGVFLQITGDAGLD
+LEVPGRPFSLGRLIAAQAAGDARVLGDLGRPVVTLHLRRRDAGIEALRSAVRGR
+>KD337_NAFOICDF_01656
+MSTFGLTATGAALDAVDRHVPALVAERFASRLAAEDADLWGPDARDEAAKRLGWISLFEESRTVAAEAAALAEELRGQGL
+TRVVLAGMGGSSLAPEVIAATAGAELEVLDSTDPQQVAAVLDHDLERTVLVVSSKSGSTVETDSQRRIVEAALAAEDIDP
+ASRIVVVTDPGSPLEEASVEAGYRAVFTADPTVGGRYSALTAFGLVPAALAGVDVESLLDEAEDVLDLVTADDADNPALQ
+LGAAIGGTEPLRDKLVIQDLGSGIDGFGDWVEQLIAESTGKDGTGLLPVVVRPGDPETAWEAPDLLKVTLVSESEESPAG
+GDGVRLHGSLGALLLTWEAATAVAGRLLGINPFDQPDVEAAKAAARELLDSPAEEAEPGTVIHGVEVSGPESVTSADDLR
+GVLAAVRELVPEDGYLAVHAYLDRHADVDLAGIRADLASALGRPVTFGWGPRFLHSTGQYHKGGPRNGVYLQVTGDAALD
+VEVPGRPFTLGRLIAAQAAGDADVLRRLGRPVVTLRLRDRSAGIAALRTAAREA
+>SA211_MHAAABBN_00849
+MSTLGLTATGAALEAIDRHLPALLQDRVASRLGAQDADLWGAPARDEAAKRLGWIDLFEDSRALVPDIAQLTRELRAEGV
+DRVVLAGMGGSSLAPEVIAATAGVELEVLDSTDPLQVSRALERDLERTVLVVSSKSGSTVETDSQRRVVEAAFRDAGIDP
+RTRLVAVTDPGSPLHAACESAGWRAVFTADPTVGGRFSALTAFGLVPTGLAGVDVAALLDDAEAVLDLLIADDEDNPGLQ
+LGAALGGTRPLRDKLVFADHGSGIAGLPAWIEQLIAESTGKDGTGLLPVVVAPGDPETVWDAPDLLQVQLVGE-DDVAAP
+GHGVQVAGSLGAQLLLWEVATAVAGRLLGINPFDQPDVEAAKAAARTLLDGPAAERPADGEVEGVEVSGPASVTSAPDLA
+GVLRATAALVPEGGYLAVHAYLSRHDDAELEELRADLADLVGRPVTFGWGPRFLHSTGQFHKGGPAVGVFLQITGDAGLD
+LEVPGRPFSLGRLIAAQAAGDARVLGDLGRPVVTLHLRRRDAGIEALRSAVRGR
+>TT9_LFPAFLNI_01080
+MSTLGLTATGAALEAIDRHLPALLQDRVASRLGAQDADLWGAPARDEAAKRLGWIDLFEDSRALVPHIAQLTRELRAEGV
+DRVVLAGMGGSSLAPEVIAATAGVELEVLDSTDPLQVSRALERDLERTVLVVSSKSGSTVETDSQRRVVEAAFRDAGIDP
+RTRLVAVTDPGSPLHAACESAGWRAVFTADPTVGGRFSALTAFGLVPTGLAGVDVAALLDDAEAVLDLLIADDEDNPGLQ
+LGAALGGTRPLRDKLVFADHGSGIAGLPAWIEQLIAESTGKDGTGLLPVVVAPGDPETVWDAPDLLQVQLVGE-DDVAAP
+GHGVQVAGSLGAQLLLWEVATAVAGRLLGINPFDQPDVEAAKAAARTLLDGPAAERPADGEVEGVEVSGPASVTSAPDLA
+GVLRATAALVPEGGYLAVHAYLSRHDDAELEELRADLADLVGRPVTFGWGPRFLHSTGQFHKGGPAVGVFLQITGDAGLD
+LEVPGRPFSLGRLIAAQAAGDARVLGDLGRPVVTLHLRRRDAGIEALRSAVRGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001227.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001227.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b85ae345b84a58c19496f1d521420b555d978d27
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001227.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01765
+MDMLTLILQILVVVLSVVIVLLVLLHKGRGGGVSDMFGGGVTTSMSSSGSAQRLLTRLTV
+GTVAAWALLIVTLGVLPRLAMES
+>KBS0714_MOLHKGIG_01127
+MDVLTLALQILVVVLSVVIVLLILLHKGRGGGVSDMFGGGVTSSMSSSGSAQRLLTRLTV
+GSVVAWGVVIALLGVLPRLTMES
+>KD337_NAFOICDF_01659
+MDILTLLLQIAVVALSVVIIMLVLLHKGRGGGVSDMFGGGVTTSMSSSGSAQRLLTRVTV
+SATVLWGLAIVALALIARFSVES
+>SA211_MHAAABBN_00846
+MDVLTLALQILVVVLSVVIVLLILLHKGRGGGVSDMFGGGVTSSMSSSGSAQRLLTRLTV
+GSVVAWGVVIALLGVLPRLTMES
+>TT9_LFPAFLNI_01077
+MDVLTLALQILVVVLSVVIVLLILLHKGRGGGVSDMFGGGVTSSMSSSGSAQRLLTRLTV
+GSVVAWGVVIALLGVLPRLTLES
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001228.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001228.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f4a280f112acce54ffdf55b433eb046471fe9e55
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001228.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01766
+MA-ETAARVPLIAGNWKMNLDHREAVTLVQRLAWLLTDADHDHEDVEVAVFPPFTDLRAV
+QVLVTGDRLDVAYGAQDLSPEDSGAYTGDVSGAFLAALGCRYAIVGHSERRTIHGEDDAL
+VARKAAAALRHGLSPVVCVGEGLDVRQAGRHVAHTVAQLEGSLVGLSAEDVARTVVAYEP
+VWAIGTGEVAGAGDAQEMCAALRARVGELHGDDVAAGLRILYGGSVKSTSAPELLAQPDV
+DGALVGGASLDAEEFARIVRFDQA-
+>KBS0714_MOLHKGIG_01126
+MA-EQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLSDADHDQEAVEVAVFPPFTGLRSV
+QTLVTGDRLDLVYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDAL
+VARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEP
+VWAIGTGEVAGPEDAQQMCAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDV
+DGALVGGASLDADEFAKIVRFDQA-
+>KD337_NAFOICDF_01660
+MSVVQPVRVPLIAGNWKMNLDHQEAVTLVQRLGWLLGDADHEQGNVEAAVFPPFTDLRSV
+QTLVAADRIGVAYGAQDVSAEDSGAFTGEVSGAFLAKLGCAYAIVGHSERRTLHHEDDAL
+VARKAAAALRHGLVPVVCVGEGLDVRQAGRHVEHTVAQLRGSLDGLSSEDVARVVVAYEP
+VWAIGTGEVASAADAQEMCAALRADLAERHGAEVAERVRVLYGGSVKSSSAPELLAQPDV
+DGALVGGASLDADEFARIVRSDAAH
+>SA211_MHAAABBN_00845
+MA-EQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLTDADHDQEAVEVAVFPPFTGLRSV
+QTLVTGDRLDLVYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDAL
+VARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEP
+VWAIGTGEVAGPEDAQQMCAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDV
+DGALVGGASLDADEFAKIVRFDQA-
+>TT9_LFPAFLNI_01076
+MA-EQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLTDADHDQEAVEVAVFPPFTGLRAV
+QTLVTGDRLDLAYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDAL
+VARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEP
+VWAIGTGEVAGPEDAQQMCAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDV
+DGALVGGASLDADEFAKIVRFDQA-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001231.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001231.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5a35948e27a686fc3ff1e7d296f028ea3fd4d582
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001231.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01770
+MTEYTLPELDYDYAALEPHISARIMELHHSKHHATYVKGANTALEKLAAARDADDFAAVN
+QLSKDLAFNLGGHTNHSIFWKNLSPEGGDKPTGELAAAIDEHFGSFDKFRAHFTAAALGI
+QGSGWAVLAYEPIGGNLVIEQFYDQQNGVPVATIPLFQLDMWEHAFYLDYQNVKADYVKA
+IWNIVNWADVQARFEAARQGASGLILPA
+>KBS0714_MOLHKGIG_01123
+MTEYTLPELDYDYAALEPHISARIMELHHSKHHATYVKGANTALEKLAAAREAGDFGSVN
+QLSKDLAFNLGGHTNHSIFWKNLSPEGGDKPTGELAAAIDEYFGSFDQFQAHFTAAALGI
+QGSGWAVLAYEPIGGNLVIEQFYDQQNGVPVATIPLFQLDMWEHAFYLDYQNVKADYVKA
+IWNIVNWADVQARFEAARAGASGLILPA
+>KD337_NAFOICDF_01663
+MTEFVLPELDYDYAALEPHISAKIMELHHSKHHATYVKGANTALEKLAAAREAEDFASVN
+QLSKDLAFNLGGHTNHSIFWKNLSPEGGDKPTGELAAAIDEFFGSFDKFQAHFTAAALGI
+QGSGWAVLAYEPIGGNLVIEQFYDQQNGVPVATIPLFQLDMWEHAFYLDYQNVKADYVKA
+IWNIVNWADVQQRFEAARNGASGLILPA
+>SA211_MHAAABBN_00842
+MTEYTLPELDYDYAALEPHISARIMELHHSKHHATYVKGANTALEKLAAAREAGDFGSVN
+QLSKDLAFNLGGHTNHSIFWKNLSPEGGDKPTGELAAAIDEYFGSFDQFQAHFTAAALGI
+QGSGWAVLAYEPIGGNLVIEQFYDQQNGVPVATIPLFQLDMWEHAFYLDYQNVKADYVKA
+IWNIVNWADVQARFEAARAGASGLILPA
+>TT9_LFPAFLNI_01073
+MTEYTLPELDYDYAALEPHISARIMELHHSKHHATYVKGANTALEKLAAAREAGDFGSVN
+QLSKDLAFNLGGHTNHSIFWKNLSPEGGDKPTGELAAAIDEYFGSFDQFQAHFTAAALGI
+QGSGWAVLAYEPIGGNLVIEQFYDQQNGVPVATIPLFQLDMWEHAFYLDYQNVKADYVKA
+IWNIVNWADVQARFEAARAGASGLILPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001232.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001232.fa
new file mode 100644
index 0000000000000000000000000000000000000000..456cb801906b1c6c6066eb3cf571f31c70b0bdf3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001232.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01771
+MALTMTLKEELARVPVAATPERRAETAAMLRFAGGLHLVSGRVVVEAELDHGASARRLRA
+SITELYGLATEIVVVSGGNLRRGQRYVIRVVRGGEDLARRTGLIDQRGRPVRGLASALVT
+GTTADTAAVWRGALLAHGSLTEPGRSAALEVTTPGPEAALALVGAARRLDVAAKAREVRQ
+ADRVVVRDGEAIATLLTAVGAEQTAALWRERRERKEVRATANRLANFDDANLRRSAQAAV
+AAGAKVERALEILGDEVPEHLRYAGRLRLEHKQASLDELGRLADPPMTKDAVAGRIRRLL
+AMADKRAAERGVPGTDTPAED
+>KBS0714_MOLHKGIG_01122
+MALTMTLKEELARVPVAATPERRAETAAMLRFAGGLHLVAGRVVVEVELDHGASARRLRA
+AITELYGLAPEIVVVSGGNLRRGQRYVLRVVRGGEDLARQTGLIDQRGRPVRGLAPVLVS
+GTTAATAAVWRGALLAHGSLTEPGRSAALEVTTPGPEAALALVGAARRLRVAAKAREVRQ
+SDRVVVRDGEAIATLLAAVGAEQTATLWRERRERKEVRATANRLANFDDANLRRSAQAAV
+TAGAKVERALEILGDEVPDHLRYAGRLRLEHKQASLDELGRLADPPMTKDAVAGRIRRLL
+AMADKRAAERGIPGTDAASEG
+>KD337_NAFOICDF_01664
+MALTMTLKEELARVPVGAVPERRAETATMLRFAGGLHLVSGRVVIEAELDHGASARRLRA
+AITELYGHATEIVVISGGNLRRGQRYVIRVVRGGEDLARQTGLLDLRGRPVRGLPPALVQ
+GSAADTAAVWRGALLAHGSLTEPGRSSCLEVTTPGPEAALALVGAARRLGVAAKAREVRQ
+ADRVVVRDGEAIAALLTAVGADQTAALWQERRERKEVRATANRLANFDDANLRRSAQAAV
+AAGARVERALEILGDDVPDHLGYAGRLRLEHKQASLDELGRLADPPMTKDAVAGRIRRLL
+SMADKRAAAEGIPGT-AVDGA
+>SA211_MHAAABBN_00841
+MALTMTLKEELARVPVAATPERRAETAAMLRFAGGLHLVAGRVVVEAELDHGASVRRLRA
+AITELYGLAPEIVVVSGGNLRRGQRYVLRVVRGGEDLARQTGLIDQRGRPVRGLAPVLVS
+GTTAATAAVWRGALLAHGSLTEPGRSAALEVTTPGPEAALALVGAARRLRVAAKAREVRQ
+SDRVVVRDGEAIATLLAAVGAEQTATLWRERRERKEVRATANRLANFDDANLRRSAQAAV
+TAGAKVERALEILGDEVPDHLRYAGRLRLEHKQASLDELGRLADPPMTKDAVAGRIRRLL
+AMADKRAAERGIPGTDAASEG
+>TT9_LFPAFLNI_01072
+MALTMTLKEELARVPVAATPERRAETAAMLRFAGGLHLVAGRVVVEVELDHGASARRLRA
+AITELYGLAPEIVVVSGGNLRRGQRYVLRVVRGGEDLARQTGLIDQRGRPVRGLAPVLVS
+GTTAATAAVWRGALLAHGSLTEPGRSAALEVTTPGPEAALALVGAARRLRVAAKAREVRQ
+SDRVVVRDGEAIATLLAAVGAEQTATLWRERRERKEVRATANRLANFDDANLRRSAQAAV
+TAGAKVERALEILGDEVPDHLRYAGRLRLEHKQASLDELGRLADPPMTKDAVAGRIRRLL
+AMADKRAAERGIPGTDAASEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001233.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001233.fa
new file mode 100644
index 0000000000000000000000000000000000000000..697b293b82ed619c511322d5913aee277fb61519
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001233.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01772
+----MTSPLTGQLPLPPGVGTAVRGPAGGMARPAIRVTALGGGHGLSASLTALRHVAGHL
+TAIVTVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAQVMQHRFRSTEVDA
+EEATLDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAG
+PDGGLRTRRVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALAAIELADWVVLGPGSLYT
+SVLPHLLMPEVCQALDATAARRLMVLNLRTGDQETTGLTHADHLRVLHSHAPDLRLDVVI
+ADVDAVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTD
+>KBS0714_MOLHKGIG_01121
+----MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHL
+TAIVTVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFHSTEVPA
+DQATLDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAG
+PDGRLRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIEMADWVVLGPGSLYT
+SVLPHLLMPDVRAALAATTARRLMVLNLRTGDQETTGLTHADHLKVLRSYAPDLRLDVVI
+ADVDAVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVSIGEAMTH
+>KD337_NAFOICDF_01665
+MTGPVTGPSTSSLPLPPAAARGAWATTSGTVRPQVRVTALGGGHGLSASLAALRLVAGHL
+TAVVTVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAQVMQHRFRSTEVPE
+AEATLDGHALGNLLIVALWELIGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDLLAED
+DAGRLVRRHVEGQVALAQAAHDGRVVDVRLSPADAPATPEALAAIELADWVVIGPGSLYT
+SVLPHLLMPEVRGALEVTTARRIFVLNIDTGTQETTGMTHADHLKVLREHAPGLQLDVVI
+ADADAVADRAAVVQEARRLGARVAFSRVAHAANRLAHDPLRLAVAIDEAMSS
+>SA211_MHAAABBN_00840
+----MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHL
+TAVVTVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFRSTEVPA
+DQATLDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAG
+PDGRLRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIELADWVVLGPGSLYT
+SVLPHLLMPEVRSALAATAARRLMVLNLRTGDQETTGLAHADHLKVLRSYAPDLRLDVVI
+ADVDAVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTH
+>TT9_LFPAFLNI_01071
+----MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHL
+TAIVTVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFRSTEVPA
+DQATLDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAG
+PDGRLRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIELADWVVLGPGSLYT
+SVLPHLLMPDVRAALAATTARRLMVLNLRTGDQETTGLTHADHLKVLRSYAPDLRLDVVI
+ADVDAVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001235.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001235.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bb86c38694d29774d9c85a80644582c249f294ce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001235.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_01774
+--MADPASYRPAPGEISTSPGVYRFRDADGRVVYVGKAKNLRARLGSYFQDPARLTTKTRTMVFTAAAVEWTVVGSELEA
+LQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRRPGVKYFGPFHPAKAIRETVDLMLRVFPVRTCSA
+GVFKRARAQDRPCLLGYIGKCSAPCVGRISPAEHRELAQDFCDFMAGDAQRFIRELERAMQGAVEELRYEDAARLRDDIA
+ALRRVFERNAVVLPESTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVSEPEMVTHLLQQVYGDLAGEDRI
+PHEILVPAEPDDAAQLVEWLSGLRGARVNVRVPRRGTKADLMETVRENAEMALKLHKSRRSGDLTTRSAALRELQEALEI
+AEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKKKDYRRFNVTGEAARDDTASMKDVLSRRFARLAEERAEGAPLSGQLE
+GEEEGRD-RRFAYPPSLVVVDGGPPQVAAAAAVLEELGLDDLPVVGLAKRLEEVWLPGDEFPVVLPRTSEALYLLQRIRD
+ESHRFAIAGHRGRRAKAMTASALDGISGLGPAKRTALLNHFGSVAQIRAAGVERLTEVAGIGPTLAQTVHAALAPAEPTD
+TVEP
+>KBS0714_MOLHKGIG_01119
+MPVADPASYRPAPGEISTSPGVYRFRDADGRVVYVGKAKNLRARLSSYFQDPARLATKTRTMVFTAAAVEWTVVGSELEA
+LQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFGPFHPAKAIRETVDLMLRVFPVRTCSA
+GVFKRARAQDRPCLLGYIGKCSAPCVGRISPADHRALAQDFCDFMAGDANRFIRELEKAMARAVEELRYEDAARLRDDIA
+ALRRVFERNAVVLPENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDLEGPERI
+PHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALKLHKSRRSGDLTTRSAALRELQEALEI
+TEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKKKDYRRFNVTGEAARDDTASLRDVLRRRFARLAKERAEGAPLSGQVE
+ADDQEAG-RRFAYPPSLVVVDGGPPQVAAAAAVLEELGLDDLPVVGLAKRLEEVWLPGDEFPVVLPRTSEGLYLLQRIRD
+ESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEIRAAGVDRLTEVAGIGPRLAEAVHTALTADTPAD
+TVES
+>KD337_NAFOICDF_01667
+--MADPRTYRPAPGEISTSPGVYRFRDPDGRVIYVGKAKNLRARLSSYFQDPARLATKTRTMVFTASAVEWTVVASELEA
+LQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNERFPRVQVMRGDKRPGVKYFGPFHPAKAIRETVDLMLRVFPVRTCSA
+GVFKRAQAQDRPCLLGYIGKCSAPCVGRISPDEHRALAQDFCDFMAGDADRFVRELEKAMAGAVEELRFEDAARLRDDIA
+ALRRVFERNAVVLAESTEADVFALHSDELETAVQVFHVRQGRIRGQRGWIMERVEDVGEDEAVAELLTQVYGDVPDTERI
+PHEVLVPVLPAGAEQVTEWLSGLRGARVQVRVPQRGPKADLMGTVRENAEMALKLHKTRRSGDLTTRSAALRELQDALEI
+DEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKKKDYRRFNVTGEAARDDTASLRDVLRRRFARMAEDRREGGVLTGQID
+AEEAEGERRRFAYPPSLVVVDGGPPQVAAAAEVLAELGLDDLPVVGLAKRLEEVWLPGDEFPVVLPRTSEGLFLLQRIRD
+ESHRFAIAGHRSRRTKAMTASALDDVPGLGPTRRRALLTHFGSVERMRQAGPAGLTEVAGIGPALAEAVHAALTASDGGD
+TVAP
+>SA211_MHAAABBN_00838
+--MADPASYRPAPGEISTSPGVYRFRDADGRVVYVGKAKNLRARLSSYFQDPARLATKTRAMVFTAAAVEWTVVGSELEA
+LQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFGPFHPAKAIRETVDLMLRVFPVRTCSA
+GVFKRARAQDRPCLLGYIGKCSAPCVGRISPADHRALAQDFCDFMAGDANRFIRELEKAMARAVEELRYEDAARLRDDIA
+ALRRVFERNAVVLPENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDLEGPERI
+PHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALKLHKSRRSGDLTTRSAALRELQEALEV
+TEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKKKDYRRFNVTGEAARDDTASLRDVLRRRFARLAKERAEGAPLSGQVE
+GDDQEAG-RRFAYPPSLVVVDGGPPQVAAAAAVLAELGLDDLPVVGLAKRLEEVWLPGDEFPVVLPRTSEGLYLLQRIRD
+ESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEIRAAGVDRLTEVAGIGPRLAEAVHTALTADTPAD
+TVES
+>TT9_LFPAFLNI_01069
+MPVADPASYRPAPGEISTSPGVYRFRDADGRVVYVGKAKNLRARLSSYFQDPARLATKTRTMVFTAAAVEWTVVGSELEA
+LQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFGPFHPAKAIRETVDLMLRVFPVRTCSA
+GVFKRARAQDRPCLLGYIGKCSAPCVGRISPADHRALAQDFCDFMAGDANRFIRELEKAMARAVEELRYEDAARLRDDIA
+ALRRVFERNAVVLPENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDLEGPERI
+PHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALKLHKSRRSGDLTTRSAALRELQEALEI
+TEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKKKDYRRFNVTGEAARDDTASLRDVLRRRFARLAKERAEGAPLSGQVE
+GDDQEAG-RRFAYPPSLVVVDGGPPQVAAAAAVLEELGLDDLPVVGLAKRLEEVWLPGDEFPVVLPRTSEGLYLLQRIRD
+ESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEIRAAGVDRLTEVAGIGPRLAEAVHTALTADTPAD
+TVES
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001237.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001237.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6a37856074a4dbe54bff7eb6e1fc7e9ed28d1b0a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001237.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01778
+MSQIAPESPHPDTDAVAGDVTGRQGGGFTWDPAQYESFAEHRARPFHDLVGRVRAEAPRV
+VVDLGCGPGTLTRTLAERWPDAEVIGLDDSPAMLKRAREQAARTGAPANLRFEAVDASQW
+RPSRATDVVVSNAMLQWIPTHRRLIRRWLGDLTPGAWFAAQIPRPYEQPSHAAIVALAED
+PAFSEPLHGVATTRTVAPPEEYTRLFLEAGWSPVVWETEYQQVLTGEDPVFRWTSGAALR
+PSLQALARWDAEECSAEGAGLLEAFVDRYRAAMREAYPPVPGVTADDGGPVTIFPARRLF
+MVGQKPA-
+>KBS0714_MOLHKGIG_01115
+MSQIAPESPHPDTDAVVGDVTGRQGGGFTWDPAQYEGFAEHRARPFHDLVGRVRAEAPRV
+VVDLGCGPGTLTRTLAERWPDAEVIGLDDSPAMLERAREQAARTGAPANLRFEAVDASQW
+RPSGATDVVVSNAMLQWIPTHRRLIRRWLGDLTPGAWFAAQIPRPYEQPSHAAIVALAED
+PAFSEPLHGVATTRTVAPPEEYTRLFLEAGWSPVVWETEYQQVLTGEDPVFRWTSGAALR
+PSLQALARWDAEEGAAEGAGLLEAFVDRYRAAMREAYPPVPGVTADDGGPVTIFPARRLF
+MAGQKPA-
+>KD337_NAFOICDF_01671
+M-------------STVPAVTGRETAGFTWDPAQYEGFAEHRARPFHDLVARVEAEAPRV
+VVDLGCGPGTLTRTLAERWPAAEVIGLDDSPAMLERAREGAADADLP-NLRFDRVDASQW
+RPGPEVDVIVSNAMLQWIPTHRRLIRRWLGDLHPGAWFGAQLPRPYQQASHATIVALADE
+PVFSEALHGVETTRTVAPPEEYTRLFLEAGWTPSVWETEYQQVLTGPDPVLRWTSGAALR
+PSLQALAAWDAEEGAAEGAGLLELFVARYRQAMREAYPPVPGVSDADGGPLTVFPVRRMF
+LVGRKPGE
+>SA211_MHAAABBN_00834
+MSQIAPESPHPDTDAVVGDVTGRQGGGFTWDPAQYEGFAEHRARPFHDLVGRVRAEAPRV
+VVDLGCGPGTLTRTLAERWPDAEVIGLDDSPAMLERAREQAARTGTPANLRFEAVDASQW
+RPSRATDVVVSNAMLQWIPTHRRLIRRWLGDLTPGAWFAAQIPRPYEQPSHAAIVALAED
+PAFSEPLHGVATTRTVAPPEEYTRLFLEAGWSPVVWETEYQQVLTGEDPVFRWTSGAALR
+PSLQALARWDAEEGSAEGAGLLEAFVDRYRAAMREAYPPVPGVTADDGGPVTIFPARRLF
+MVGQKPA-
+>TT9_LFPAFLNI_01065
+MSQIAPESPHPDTDAVVGDVTGRQGGGFTWDPAQYEGFAEHRARPFHDLVGRVRAEAPRV
+VVDLGCGPGTLTRTLAERWPDAEVIGLDDSPAMLERAREQAARTGTPANLRFEAVDASQW
+RPSRATDVVVSNAMLQWIPTHRRLIRRWLGDLTPGAWFAAQIPRPYEQPSHAAIVALAED
+PAFSEPLHGVATTRTVAPPEEYTRLFLEAGWSPVVWETEYQQVLTGEDPVFRWTSGAALR
+PSLQALARWDAEEGSAEGAGLLEAFVDRYRAAMREAYPPVPGVTADDGGPVTIFPARRLF
+MVGQKPA-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001238.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001238.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d99e021f5daeb60d33d56035089a948bef12d5d8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001238.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_01779
+MTSPATNPPSLTDRIDALPPTPDADDVFGAFAAWTEVRGISLYPAQEEAALELVQGRHVILATPTGSGKSLVALAAHADA
+LAHDAVSYYTAPIKALVSEKFFALVDVFGAENVGMVTGDSTVNGDAPIICCTAEILANRALREGSGMEIGTVVMDEFHYY
+ADPSRGWAWQVPLLELPQARFLLMSATLGDTTRLEADLIERTGREVAVVAHAERPIPLTFEWSEVPLQEKVEELVSTHQA
+PVYIVHFSQLDAVETAQGLSSISVTSKEEKEAIAARIAGFRFSAGFGHTLNRLVRAGIGVHHAGMLPKYRRLVEKLAQDG
+LLKVICGTDTLGVGINVPIRTVLLTALSKFDGEKTRLLQAREFHQIAGRAGRAGFDTSGTVVVQAPEHVIENKAAERKAA
+AKFANVKDEAERAKRMKQSVKSGKRKSPPAGFVSWGPATFERLVAAEPEPLVSRMQITHSMLLNILDRPGDPVVAVRRLL
+RGTHETPARQAILMRRALGIFRELLATGVVERLPEPDAEGRTVDLTVDLQPDFALNQPLSPFALAALELLDPAEPDHALD
+VVSVIEATLDPPRQVLSAQVKKAKGEAVAAMKAEGMDYNDRMRALDEVTHPQPLADLLEQQFEVYRASAPWLAEFELTPK
+SVVRDMFERAMGFGDYVRFYGIARSEGVLLRYLTDAVKALRQTVPEASRTEELQVLLDWLDEMVKQTDSSLLEEWEDLVA
+GDIEELRRDMEALEPPAPPRLTDNEPVFRVMVRNAMFQRVRLFGDERDEELARLSGDLSADDWADALDAYFGDHEDIDDG
+PAARGTELFRVAESPDVAPPVELAGSRWWAVRQVLKDPDGVHDHGVNAVVDLDASDEAGHPVIRVVSVGAPESGWGL
+>KBS0714_MOLHKGIG_01114
+MTSAATNPPSLTDRIDALPPAPDADDVFGAFAAWTEDRGISLYPAQEEAALELVQGRHVILATPTGSGKSLVALAAHADA
+LAHDAVSYYTAPIKALVSEKFFALVDVFGAENVGMVTGDSTVNGDAPIICCTAEILANRALREGSGMEIGTVVMDEFHYY
+ADPSRGWAWQVPLLELPQARFLLMSATLGDTTRLEADLTERTGREVAVVAHAERPIPLTFEWSEVPLQEKVEEFVSTHQA
+PVYIVHFSQLDAVETAQGLSSISVTSREEKEAIAARIAGFRFSAGFGHTLNRLVRAGIGVHHAGMLPKYRRLVEKLAQDG
+LLKVICGTDTLGVGINVPIRTVLLTALSKFDGEKTRLLQAREFHQIAGRAGRAGFDTSGTVVVQAPEHVIENKAAERKAA
+AKFANVKDEAERAKRMKQSVKSGKRKTPPAGFVSWGPATFERLVSAEPEPLVSRMRITHSMLLNILDRPGDPVIAVRRLL
+RGTHETPARQAVLMRRALGIFRELLATGVVERLPEPDAEGRTVDLTVDLQPDFALNQPLSPFALAALDLLDPADPDHALD
+VVSVIEATLDPPRQVLSAQVKHAKGEAVAAMKAEGMDYNDRMRALDEITHPRPLAELLEQQFELYRQDAPWLAEFELTPK
+SVVRDMFERAMGFGDYVRFYGIARSEGVLLRYLTDAVKALRHTVPEAARTEELQVLLDWLDEMVKQTDSSLLEEWEDLVA
+GDIDELRRDMEALEPPAPPRLTDNEPVFRVMVRNAMFQRVRLFGDERDEALARLSGELSADDWADALDAYFDDHEDIDDG
+PAARGPELFRVAAAPDVAAPLELAGPRWWAVRQVLKDPDGDLDHGINAVVDLDASDEAGHPVIRVVSVGAPESGWGL
+>KD337_NAFOICDF_01672
+MTPSATNPPSLTDRLDALPASPDADDVFGAFAAWTEDRGISLYPAQEEAVLELVQGRHVILATPTGSGKSLVALGAHADA
+LAHGKVSYYTAPIKALVSEKFFALVDVFGAENVGMVTGDSSVNADAPIICCTAEILANRALREGSGMEIGTVVMDEFHYY
+ADPSRGWAWQLPLLELPQARFLLMSATLGDTSMLERDLAERTGREVAVVAHAERPIPLSFEWSEVPLQEKVEELVSTHQA
+PVYIVHFSQLDAVETAVGLASISVTTKEEKEAIAERIAGFRFSAGFGKTLNRLVRAGIGVHHAGMLPKYRRLVEKLAQEG
+RLKVISGTDTLGVGINVPIRTVLLTALSKFDGEKTRILQSREFHQIAGRAGRAGFDTQGYVVVQAPEHVIENKAAERKAA
+AKFAGIKDEAERAKRMKQSVKGSKRKTPPQGFVSWGPATFDKLVASEPEPLVSRMRITHSMLLNILDRPGDPVLAVRRLL
+RATHETPARQAQLMRRALGIFRELLATGVVEVLPEPDAEGRTVDLTVDLQPDFALNQPLSPFALAALDLLDPAAPDHHLD
+VVSVIEATLDAPRQVLSAQVKKAKGEAVAAMKAEGMDYSDRMRALDEVTHPQPLAELLEQAFERYRQDAPWLAEFELSPK
+SVVRDMFERAMGFGDYVRFYGLARSEGVLLRYLTDAVKALRQTVPQEDRTEDLQVLLDWLDEMVKQTDSSLLEEWEDLMS
+GDIAELRRDLESLEPTPPPRLTDNAAVFRVMVRNAMFHRVRLFGDEQDARLAELSGDLSANDWADALDAYFDEHEDIDDG
+PDARGQEFFRVATAPGARCPVELEGSRWWAVRQVLKDHDGDHDHGINAVVDLEASDEAGHPAIRVVSVGAPVPGWDL
+>SA211_MHAAABBN_00833
+MTSAATNPPSLTDRIDALPPTPDADDVFGAFAAWTEDRGISLYPAQEEAVLELVQGKHVILATPTGSGKSLVALAAHADA
+LAHDAVSYYTAPIKALVSEKFFALVDVFGAENVGMVTGDSTVNGDAPIICCTAEILANRALREGSGMEIGTVVMDEFHYY
+ADPSRGWAWQVPLLELPQARFLLMSATLGDTTRLEADLTERTGREVAVVAHAERPIPLTFEWSEVPLQEKVEELVSTHQA
+PVYIVHFSQLDAVETAQGLSSISVTSREEKEAIAARIAGFRFSAGFGHTLNRLVRAGIGVHHAGMLPKYRRLVEKLAQDG
+LLKVICGTDTLGVGINVPIRTVLLTALSKFDGEKTRLLQAREFHQIAGRAGRAGFDTSGTVVVQAPEHVIENKAAERKAA
+AKFANVKDEAERAKRMKQSVKSGKRKTPPAGFVSWGPATFERLVSAEPEPLVSRMRITHSMLLNILDRPGDPVIAVRRLL
+RGTHETPARQAVLMRRALGIFRELLATGVVERLPEPDAEGRTVDLTVDLQPDFALNQPLSPFALAALDLLDPADPDHALD
+VVSVIEATLDPPRQVLSAQVKHAKGEAVAAMKAEGMDYNDRMRALDEITHPRPLAELLEQQFELYRQDAPWLAEFELTPK
+SVVRDMFERAMGFGDYVRFYGIARSEGVLLRYLTDAVKALRHTVPEAARTEDLQVLLDWLDEMVKQTDSSLLEEWEDLVA
+GDIDELRRDMEALEPPAPPRLTDNEPVFRVMVRNAMFQRVRLFGDERDEALARLSGELSADDWADALDAYFDDHEDIDDG
+PAARGPELFRVAAAPDVAAPLELAGPRWWAVRQVLKDPDGDLDHGINAVVDLDASDEAGHPVIRVVSVGAPESGWGL
+>TT9_LFPAFLNI_01064
+MTSAATNPPSLTDRIDALPPTPDADDVFGAFAAWTEDRGISLYPAQEEAVLELVQGKHVILATPTGSGKSLVALAAHADA
+LAHDAVSYYTAPIKALVSEKFFALVDVFGAENVGMVTGDSTVNGDAPIICCTAEILANRALREGSGMEIGTVVMDEFHYY
+ADPSRGWAWQVPLLELPQARFLLMSATLGDTTRLEADLTERTGREVAVVAHAERPIPLTFEWSEVPLQEKVEELVSTHQA
+PVYIVHFSQLDAVETAQGLSSISVTSKEEKEAIAARIAGFRFSAGFGHTLNRLVRAGIGVHHAGMLPKYRRLVEKLAQDG
+LLKVICGTDTLGVGINVPIRTVLLTALSKFDGEKTRLLQAREFHQIAGRAGRAGFDTSGTVVVQAPEHVIENKAAERKAA
+AKFANVKDEAERAKRMKQSVKSGKRKTPPAGFVSWGPATFERLVSAEPEPLVSRMRITHSMLLNILDRPGDPVIAVRRLL
+RGTHETPARQAVLMRRALGIFRELLATGVVERLPEPDAEGRTVDLTVDLQPDFALNQPLSPFALAALDLLDPADPDHALD
+VVSVIEATLDPPRQVLSAQVKHAKGEAVAAMKAEGMDYNDRMRALDEITHPRPLAELLEQQFELYRQDAPWLAEFELTPK
+SVVRDMFERAMGFGDYVRFYGIARSEGVLLRYLTDAVKALRHTVPEAARTEDLQVLLDWLDEMVKQTDSSLLEEWEDLVA
+GDIDELRRDMEALEPPAPPRLTDNEPVFRVMVRNAMFQRVRLFGDERDEALARLSGELSADDWADALDAYFDDHEDIDDG
+PAARGPELFRVTAAPDVAAPLELAGPRWWAVRQVLKDPDGDLDHGINAVVDLDASDEAGHPVIRVVSVGAPESGWGL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001239.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001239.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dcba4108942976d0dda3143ef87747393e145079
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001239.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01780
+M----SAPAPRVPGDPRGFAPLEPARHRVGERTELYDGTVAVDHWFTVPVDHALTLAEAEAQDAAGTGVGPHGRGTLTVF
+AREIRAAGDADGARPWALYLQGGPGGAGPRPARGGGWIGALASEHRVLLLDQRGTGRSTAASVAALTAPGAFASDEALAE
+HLVHLRAPSIVRDAEMVRLALGAAPWTTLGQSFGGFCTLTYLSFHPEGLRRCLVTGGLAPLTGHADRVYQATYARMRDRA
+HEFFARHTGDRAAWAEAVALIRAAEQAGEPVRLPDGGLLTVARAQALGMLLGGNTRVDRLHWILAEAVDRSGPAPRLSET
+FLAAVAEQNDRHVNPLYTVLHESIYAQPAELAGGRAATDWSAARVLAEHPDFDPDAADAPLPTGEHVMPASLELDPHLRP
+LRGAARLLAERTDWGPLYDVEALARNIVPVAAAVYTDDVYVDRDLSLETAGRVRGLRVWETDAFHHDGLADDGPAIVRRL
+LEMTGEGAAPAAAEGAERSDSAPAASETTTAPGPVD
+>KBS0714_MOLHKGIG_01113
+-----------MAGDPRGFAPLEPARHRVGERTELYDGTVTVDHWFSVPIDHALGLAEAEAQDAAGTGVGPHGRGTLTVF
+AREIRAKDDPEGERPWALYLQGGPGSAGPRPARLSGWLGALAESHRVLLLDQRGTGRSTPATVATLTAPGAFATDEARAE
+HLVHLRAPSIVRDAEMLRLALGAGPWTTLGQSFGGFCTLSYLSFHPEGLQRSLVTGGLAPLTGHADRVYRATYARMRART
+EEFFDRHPADRDAWSEAVGLIRAAEAAGAPIPLPGGGPLTVGRAQGLGMLLGGNTRVDRLHWVLAEAVDRTGPAPRLSET
+FLAAVADQDDRLVNPLYTVLHEAIYAQPADLAGGRADTGWSASRMLAEHPDFDPEATTVPLPTGEHVMPWSVEVDPRLRP
+LAGTARLLAERTQWGPLYDVAALAQNTVPVAAAVYADDVYVDRDLSLETARRVRGLQVWETDAFHHDGIADDGPAILERL
+LAMT-----------------APDGAGTTTAPDPVD
+>KD337_NAFOICDF_01673
+MTRTGTGDAAFVPGDPRGFAPVGPAAHREGERTVLFDGTVAVDHWFTVPVDHALTLAEALAQDAAGTGLGPGGRGTLEVF
+AREVRHPEDPEGERPWLLYLQGGPGSGGPRPARLGGWQCELAQHHRLLLLDQRGTARSTPVTAATL---AGLPDDAARAA
+YLTHLRAPQIVQDAEMIRVALGAPPWTTLGQSFGGFCTLSYLSWRAEGLERCLVTGGLAPLTGHADRVYRATTARMHARW
+QEFLERHPQDAGHWAEAVALIRAAQDDGDPYVLPDGTALTVGRAQQLGMLLGGNTRVDGLHWVLAEAVDRSGGEPRLSPG
+FLAAVAAQTTRAVNPLYAVLHEAIYAQPAALTDGRGATAWSAQRVLAEHPDSSPAADPAPVPTGEHVLPWSFETEPELRA
+LAGVAALLAAKDDWGALYDLDALAANEVPVAAAVYTDDVYVDRDLSLETAARVRGLQVWETDAFHHDGLADDGPGIVRRL
+RGMLG----------------A--------------
+>SA211_MHAAABBN_00832
+-----------MAGDPRGFAPLEPARHRVGERTELYDGTVTVDHWFSVPIDHALGLAEAEAQDAAGTGVGPHGRGTLTVF
+AREIRAKDDPEGERPWALYLQGGPGSAGPRPARLSGWLGALAESHRVLLLDQRATGRSTPATVATLTAPGAFATDEARAE
+HLVHLRAPSIVRDAEMLRLALGAGPWTTLGQSFGGFCTLSYLSFHPEGLQRSLVTGGLAPLTGHADRVYRATYARMRART
+EEFFDRHPADRDAWSEAVGLIRAAEAAGAPIPLPGGGPLTVGRAQGLGMLLGGNTRVDRLHWVLAEAVDRTGPAPRLSET
+FLAAVADQDDRLVNPLYTVLHEAIYAQPADLAGGRADTGWSASRMLAEHPDFDPEATTVPLPTGEHVMPWSVEVDPRLRP
+LAGTARLLAERTQWGPLYDVAALAQNTVPVAAAVYADDVYVDRDLSLETARRVRGLQVWETDAFHHDGIADDGPAILERL
+LAMT-----------------APDGAGTTTASDPVN
+>TT9_LFPAFLNI_01063
+-----------MAGDPRGFAPLEPARHRVGERTELYDGTVTVDHWFSVPIDHALGLAEAEAQDAAGTGVGPHGRGTLTVF
+AREIRAKDDPEGERPWALYLQGGPGSAGPRPARLSGWLGALAESHRVLLLDQRGTGRSTPATVATLTAPGAFATDEARAE
+HLVHLRAPSIVRDAEMLRLALGAGPWTTLGQSFGGFCTLSYLSFHPEGLQRSLVTGGLAPLTGHADRVYRATYARMRART
+EEFFDRHPADRDAWSEAVGLIRAAEAAGAPIPLPGGGPLTVGRAQGLGMLLGGNTRVDRLHWVLAEAVDRTGPAPRLSET
+FLAAVADQDDRLVNPLYTVLHEAIYAQPADLAGGRADTGWSASRMLAEHPDFDPEATTVPLPTGEHVMPWSVEVDPRLRP
+LAGTARLLAERTQWGPLYDVAALAQNTVPVAAAVYADDVYVDRDLSLETARRVRGLQVWETDAFHHDGIADDGPAILERL
+LAMT-----------------APDGAGTTTAPDPVD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001242.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001242.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4d8dd13c0bb0aee4f36aab35cef52872d639f432
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001242.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_01785
+MSLAQKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMVQNKTLAA
+QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTP
+EEYIEQMVTLRRGEEMDRDVLLRRFVQMQYVRNDVDFHRGTFRVRGDTVEIIPMYEELAVRIEFFGDEIESIQTLHPLTG
+QVVREETEMYIFPASHYVAGDERMGRAVTAIEDELRERLQELESQDRLLEAQRLRMRTTYDLEMMQQMGYCNGIENYSRH
+IDGRPDGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYL
+SATPGAYELGQADGYVEQIIRPTGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLDAGVKV
+EYLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMY
+ADNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAREDADTADFLKGMGGVKSGFDYGMGHRGLSSL
+DREEGQER-AGGGPAVDAASLPAKDLADLIEQMSLQMHQAAADLQFELAARLRDEVGELKKELRQMRREQ
+>KBS0714_MOLHKGIG_01108
+MSLAQKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMVQNKTLAA
+QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTP
+EEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRNDVDFHRGTFRVRGDTVEIIPMYEELAVRIEFFGDEIESIQTLHPLTG
+QVVREEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDRLLEAQRLRMRTTYDLEMMQQMGYCNGIENYSRH
+IDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYL
+SATPGAYELGQADGYVEQIIRPTGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKV
+EYLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMY
+ADNVTDSMRRAIDETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSL
+DRAPATGE-GAEAPAVDPASLPAKDLADLIEQMSQQMHQAAADLQFELAARLRDEVGELKKELRQMKREQ
+>KD337_NAFOICDF_01677
+MSLAKQINRVVAPFEVVSPYQPSGDQPTAIAEIAERVQAGEKDVVLMGATGTGKSATTAWVIEQLQRPTLVMVQNKTLAA
+QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRHSATNALLTRRDVVVVATVSCIYGLGTP
+EEYIAQMVTLRRGQEMDRDALLRRFVQMQYVRNDVDFHRGTFRVRGDTVEIIPMYEELAVRIEFFGDEVESIQTLHPLTG
+QVVREEEEMYIFPASHYVAGDERMGRAIATIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCNGIENYSRH
+IDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYL
+SATPGQYELSQADGVVEQIIRPTGLVDPTVVVKPTQGQIDDLLEQIRTRTEKDERVLVTTLTKRMAEDLTEYLLEAGVKV
+EYLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMY
+ADRVTDSMRRAIEETERRREVQIRYNAEHGIDPQPLRKKIADITDALAREDADSADFLKGMGGVKAGFDYGMGHRGLGSL
+DHEPPAGEVPSGSPAVDPAALPAKDLAQLIEQMSAQMHQAAADLQFELAARLRDEIGDLKKELRQMKREQ
+>SA211_MHAAABBN_00827
+MSLAQKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMVQNKTLAA
+QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTP
+EEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRNDVDFHRGTFRVRGDTVEIIPMYEELAVRIEFFGDEIESIQTLHPLTG
+QVVREEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCNGIENYSRH
+IDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYL
+SATPGAYELGQADGYVEQIIRPTGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKV
+EYLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMY
+ADNVTDSMRRAIDETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSL
+DRDATTGE-GTEAPAVDPASLPAKDLADLIEQMSKQMHQAAADLQFELAARLRDEVGELKKELRQMKREQ
+>TT9_LFPAFLNI_01057
+MSLAQKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMVQNKTLAA
+QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTP
+EEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRNDVDFHRGTFRVRGDTVEIIPMYEELAVRIEFFGDEIESIQTLHPLTG
+QVVREEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCNGIENYSRH
+IDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYL
+SATPGAYELGQADGYVEQIIRPTGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKV
+EYLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMY
+ADNVTDSMRRAIDETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSL
+DRDATTGE-GTEAPAVDPASLPAKDLADLIEQMSKQMHQAAADLQFELAARLRDEVGELKKELRQMKREQ
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001244.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001244.fa
new file mode 100644
index 0000000000000000000000000000000000000000..968b97c812f122fda680fd95f28ab4f4acad3a8a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001244.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01789
+MS-------APPARCTVLPRLAAGEDGWIVHELEVRRSRFLTVLGRVADEAQARAMIAAL
+RRRHHDARHVCSAFVLGPERSVARSSDDGEPAGTAGTPMLEALTARETAPGRTDLTDVCA
+VVVRWFGGVKLGAGGLVRAYSESVSAALDTTPLVTRSRRAILAVDAPHAQAGRWENELRA
+AGVAVLDAGYGAAGVRLRVGVPDSDAQRADFAARLADITAGAGRAEPIGTEWIDHD--
+>KBS0714_MOLHKGIG_01105
+MPDPAP---APTARCTVLPASARDPDGWLEREVEIRRSRFLTYLGRLEDEAQAREMVAVL
+RRRHHDARHVCSAFVLGPARDRMRSSDDGEPAGTAGVPMLEAVLQRETAPGRTDLTDVCA
+VVVRWFGGIKLGAGGLVRAYSDSVSGALDAAPLRTRSRLALLAVEAPHTDAGRWENELRA
+AGVSVLEASYGAAGVRLTVGVPDTEEARAAFAARLADVTAGAGRAERIGEDWVDHE--
+>KD337_NAFOICDF_01680
+MDSPAPPAGGPVA-CTVLAAGALAEDGWVVHEEEVRRSRFLAVLARTPDEEAARAVVATL
+RRRHHDARHVCSAWILGPGRRRMRSNDDGEPAGTAGVPMLEALSLRDTGGGATDLTDVTA
+VVVRWFGGVKLGAGGLVRAYSDAVSRALDAAPLVRRTRRARYELAAPHGEAGRWAHELEL
+TGASLEGVRWDGPQAVIDLAVPDVPDGHSALASAVARITSGSAVAAPAGHVWVDGALA
+>SA211_MHAAABBN_00824
+MPDPAP---APTARCTVLPASARDPDGWLEREVEIRRSRFLTYLGRVEDEAQAREMVAVL
+RRRHHDARHVCSAFVLGPARDRMRSSDDGEPAGTAGVPMLEAVLQRETAPGRTDLTDVCA
+VVVRWFGGIKLGAGGLVRAYSDSVSGALDAAPLRTRSRLALLAVEAPHTDAGRWENELRA
+AGVSVLEASYGAAAVRLTVGVPDTEEARAAFAARLADVTAGAGRAERIGEDWVDHE--
+>TT9_LFPAFLNI_01054
+MPDPAP---APTARCTVLPASARDPDGWLEREVEIRRSRFLTYLGRVEDEAQAREMVAVL
+RRRHHDARHVCSAFVLGPARDRMRSSDDGEPAGTAGVPMLEAVLQRETAPGRTDLTDVCA
+VVVRWFGGIKLGAGGLVRAYSDSVSGALDAAPLRTRSRLALLAVEAPHTDAGRWENELRA
+AGVSVLEASYGAAAVRLTVGVPDTEEARAAFAARLADVTAGAGRAERIGEDWVDHE--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001245.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001245.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3b953f3f4074a2cce289c41184f9cdeaec0b1fbf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001245.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01790
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------MDLGCGNGLLGVGAARLWPHVRVLATDQSAVAVASTLATARANGVADRLEAVRD
+DALAGRPDASEECILLNPPFHDGNAVDPAVAHRLVAEAARVLAPGGRLWCVWNSHLRHRP
+VLEAEVGPTRQVARDRTFTVTVSTRR
+>KBS0714_MOLHKGIG_01104
+M---SEPLPRG-----------VTPDVAHGGLPDDLTAGVDFAALDRWPLPPEPDRQAHD
+AADLLLLDTLAGWIASGHVPGPVAVLEDRHGALTLPLLTAGHDVRIHQDDASAERSLDAN
+LAAWR-AAGRLGGEAGELERTATPEDAARGARTVLLPLPRSLDELDRLSRIVAAAADPGV
+VLLAGGRDKHMSPRMNAVLGAAFEDVVAGRGRRKARVLTARGPRPGVTPRPPEEADRDVP
+GVGSLHLVAHAGAFGGAAADPGSRLLLASLADD----PRP-PGRL---------------
+------VDLGCGNGLLSVGAARLWPHVTVLATDQSAVAVASTLATARANRVADRVRAVRD
+DALATWPDGTEECVLLNPPFHDGNAVDPSVAHRLVAAAARVLEPGGRLWCVWNSHLRYRP
+VLEDLVGPTRQTARDRTFTVTVSERR
+>KD337_NAFOICDF_01681
+MDAIAQTPPRDPGPARLTATELVTPDAAGRGLPRDWTAEFPFERLGRWPLPESRERQAHD
+AADLLLVDTLAGWTADGRVPGPVAVLHDQHGAVSLPLLARGLNVRLGLDEASAARSVERN
+LDLFRDADGALPAGWGRLTVGGVDAATLADARTVLLLLPRALDALHLTAARIAVHAAPDV
+LVLGAGRDKHMTPSMNDVLARSFAAVVPGRGRSKSRVITAARPVDDATEPAPRRAQHRLG
+RLGAVTLVGGWATFGGAAADPGSLLLAGTLADRAPALPVPAPHRMRTDSGLGVDIPWATR
+AGAPDVVDAGSGNGMLSVVAARVWPEAAVLASDQSADAVASSAATAEANGLAERITAVQD
+DALGALPDASVRAVLLNPPFHDGTAVDPTVAHRMIEAAGRILAPGGELWCVWNSHLRHRP
+VLETAVGPTRQVARNRTFTVTVSTRR
+>SA211_MHAAABBN_00823
+M---SEPLPRG-----------VTPDVARGGLPDDLTAGVDFAALDRWPLPTEPDRQAHD
+TADLLLLDTLAGWIASGHVPGPVAVLEDRHGALTLPLLTAGHDVRIHQDDASAERSLDAN
+LAAWR-AAGRLGGETGELERTATPEEAARGARTVLLPLPRSLDELDRLSRIVSAAADPGV
+VLLAGGRDKHMSPRMNAVLGAAFEDVVAGRGRRKARVLTARGPRPGVTARPPEEADRDVP
+GVGRLHLVAHAGTFGGAAADPGSRLLLASLADD----PRP-PGRV---------------
+------VDLGCGNGLLSVGAARLWPHVTVVATDQSAVAVASTLATARANRVADRVRAVRD
+DALATWPDGEEECVLLNPPFHDGNAVDPSVAHRLVAAAARVLEPGGRLWCVWNSHLRYRS
+VLEDLVGPTRQTARDRTFTVTVSERR
+>TT9_LFPAFLNI_01053
+M---SEPLPRG-----------VTPDVARGGLPDDLTAGVDFAALDRWPLPTEPDRQAHD
+AADLLLLDTLAGWIASGHVPGPVAVLEDRHGALTLPLLTAGHDVRIHQDDASAERSLDAN
+LAAWR-AAGRLGGETGELERTATPEEAARGARTVLLPLPRSLDELDRLSRIVSAAADPGV
+VLLAGGRDKHMSPRMNAVLGAAFEDVVAGRGRRKARVLTARGPRPGVTARPPEEADRDVP
+GVGRLHLVAHAGTFGGAAADPGSRLLLASLADD----PRP-PGRV---------------
+------VDLGCGNGLLSVGAARLWPHVTVVATDQSAVAVASTLATARANRVADRVRAVRD
+DALATWPDGEEECVLLNPPFHDGNAVDPSVAHRLVAAAARVLEPGGRLWCVWNSHLRYRS
+VLEDLVGPTRQTARDRTFTVTVSERR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001246.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001246.fa
new file mode 100644
index 0000000000000000000000000000000000000000..207fb800de390592b4fa72b841441c602e9ff945
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001246.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_01791
+MTTTSNAPQVAINDIGTAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEG
+VIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKE
+EDGVVEGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRN
+NVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELS
+WKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKV
+TKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLS
+LKQANEGVDPEGTEFDPALYGMAAEYDEEGNYKYPEGFDVESNEWMEGFESERAAWEQQY
+ADAQSRWEQHKEQVRRSFEEEANAGADTGAGMGGSSYSSEAPASDGGTLASDEALAALRE
+KLTGN
+>KBS0714_MOLHKGIG_01103
+MTTTSNAPQVAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEG
+VIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKE
+EDGVVEGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRN
+NVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELS
+WKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKV
+TKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLS
+LKQANEGVDPEGTEFDPALYGMAAEYDEEGNYKYPEGFDVETNEWMEGFETERAAWEQQY
+ADAQARWEAHKEQVRRSLQEEATAGADAGAGLGGSSYSSEAPSSDGGTLASDEALAALRE
+KLTGN
+>KD337_NAFOICDF_01682
+MTTTSNAPQVAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEG
+VIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKE
+EDGVVEGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRN
+NVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRQGTVSSIVNFGAFVDLGGVDGLVHVSELS
+WKHIDHPSEVVEVGQDVTVEVLDVDMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKV
+TKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDQLFVKVIDIDLERRRISLS
+LKQANEGVDPEGTEFDPALYGMAAEYDDEGNYKYPEGFDVETNEWMEGFESERASWEQQY
+ADAQTRWEAHKEQVRRSLEEEAQ--APAGNASTASSYSSEAPASDGGTLASDEALAALRE
+KLTGN
+>SA211_MHAAABBN_00822
+MTTTSNAPQVAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEG
+VIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKE
+EDGVVEGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRN
+NVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELS
+WKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKV
+TKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLS
+LKQANEGVDPEGTEFDPALYGMAAEYDEEGNYKYPEGFDVETNEWMEGFETERAAWEQQY
+ADAQARWEAHKEQVRRSLQEEATAGADAGAGLGGSSYSSEAPSSDGGTLASDEALAALRE
+KLTGN
+>TT9_LFPAFLNI_01052
+MTTTSNAPQVAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEG
+VIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKE
+EDGVVEGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRN
+NVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELS
+WKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKV
+TKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLS
+LKQANEGVDPEGTEFDPALYGMAAEYDEEGNYKYPEGFDVETNEWMEGFETERAAWEQQY
+ADAQARWEAHKEQVRRSLQEEATAGADAGAGLGGSSYSSEAPSSDGGTLASDEALAALRE
+KLTGN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001247.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001247.fa
new file mode 100644
index 0000000000000000000000000000000000000000..06e9ca203c08024e8da115a1ba699413077e7983
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001247.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_01794
+MAADPTPEDPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRPTHVAVAFDLSGPTFRSEEY
+GEYKAGRSETPAEFAGQIELTVKVMEALGIPTITLEGYEADDIVATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYP
+KKGVSDIPPMDADAVMAKYGVSPAQYPELAALVGEAADNLPGVPGVGPGFAAKWLTQYGDLDGVLAHADEIKGKKGEALR
+AHLDDVRRNRRLNALVRDLDLPIGLEAMALEMPEREPVEELFDALQFNRIRERVFEVFSERIGETAPAAQVEEAPEFTEA
+ATAQDVADFLAAEAGNLLGVHVDVEGPALLPKRKVPVPGTFGTAVGVALVGEHAGLHVSLDADAPDPALLAALREALGEG
+GLSKAVHDLKRVLKAIAEPAEATALEAGTPLDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLAAPREPAEADAQGA
+FDLDGGAAAAERAARAADAVRAAWVVRRLSVLFTPQVLERGAQRLLQELEIPLARLLARIELTGIAVDAQALETLRADFS
+EAAAAAQESAWASVAEETGGMKVNLGSPKQLQEVLFEHLDMPRTRKTKTGWSTDVDSLQDLLEQTRHPFLENLMRHRDAT
+KLRQTVEGLLETVAPDGRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIREVFVADRVAGEDAVLLSADYSQIEMR
+IMAHLSEDAGLIQAFREGEDLHSFVGSQVFGVAPDEVSSEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF
+DRFGGVRDYLRDVVAQARRDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLAEHGM
+ASRLLLQVHDELILEVPAAELEQATALLQERMGRAAELAVPLDVHVGQGRSWHDAAH
+>KBS0714_MOLHKGIG_01101
+MAADPTPEAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRPTHVAVAFDLSGPTFRSEEY
+GEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYP
+KKGVSDIPPMDADAVKAKYGVAPAQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKKGEALR
+EHLEDVRRNRRLNALVRDLDLPIGLETMRLEMPEREPVEELFDALQFHRIRERVFEVFGERVGEDAPPPEVEAAPEFTEA
+TTAEDVRAFLAAEAGNLLGVHVDVEGPALLPRRKVPVPGTFGTPVGVALVGEHAGLHVTLDGDAPDPALVAAVREALGEG
+GLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPRESAQQRAQGS
+FDLDGGQAAAERADRAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELTGIAVDVDALTGLREDFT
+DAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDAT
+KLRQTVEGLLETVAPDGRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSADYSQIEMR
+IMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDDVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF
+DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLEEHGL
+ASRLLLQVHDELILEVPAAELEKATALLKERMGRAAELSVPLDVHVGQGRSWHDAAH
+>KD337_NAFOICDF_01684
+M-GENSTEARPRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTSMLLTMIRQQAPTHVAVAFDLSGPTFRSAEY
+GEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTKEDFEADDIVATLSAQAEAQGWDVCVVSGDRDAFQLISERTQVLYP
+KKGVSDIPPMTAADVEAKYGVRPEQYPELAALVGESADNLPGVPGVGPGFAAKWLQKYGDLDGVLAHADEITGKKGEALR
+AHLDDVRRNRRLNALVRDLDLDVSLDAMELTMPEREVVEELFDALQFQRIRERVFEVFAERLGSAAPAAPVAEAPAAVLA
+ATADDVHAFVSAHAGTLLGLHVEIDGPDLLPKRKVPVPGTFGTPVGLALAAEDAALYVDLTDADADPGLVAALGDLLAED
+GAAKAVHDLKRTLKAIAVPTGPTALPADTSLHGVVDDVALSAYLIQPDRRDTDLATLSQAHLQEPLEAP-ESAAAGAQGA
+FDLDGAQEEAERTARAARAARSAWVVRRLSQAFTPQVLERGAQRLLQEMEIPLARLLARMELAGIAVDGDALSALLADFT
+DRAEAAKESAWASVAEETGGMKVNLGSPKQLQEVLFEHLDMPKTRKTKTGWSTDVDSLQDLLEQTQHPFLENLMAHRDAT
+KLRQTVEGLRETVAPDGRIHTTYSQTVAATGRLSSLHPNLQNIPVRTEAGRRIREAFVAAPVDGEPAELLSADYSQIEMR
+IMAHLSEDAGLIEAFNSGEDLHSFVGSQVFGVDPDDVTSEQRSKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF
+DRFGGVRDYLRDVVAQARRDGFTSTIEGRRRYLPDLTSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLVEQGL
+RSRLLLQVHDELILEVPASELDAATALLQERMGRAADLSVPLDVHVGHGGTWHAAAH
+>SA211_MHAAABBN_00820
+MAADPTPEAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRPTHVAVAFDLSGPTFRSEEY
+GEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYP
+KKGVSDIPPMDADAVMAKYGVAPAQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKKGEALR
+EHLEDVRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERVFEVFGERVGEDAPPPEAEAAPEFTEA
+TTAEDVRSFLAAEAGNLLGVHVDVEGPALLPRRKVPVPGTFGTPVGVALVGEHAGLHVTLDGDAPDPALVAAVREALGEG
+GLAKAVHDLKRTLKALAAPTEGDGLGRDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGT
+FDLDGGQAAAERADRAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELTGIAVDVDALTGLREDFT
+DAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDAT
+KLRQTVEGLLETVAPDGRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSADYSQIEMR
+IMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDDVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF
+DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLEEHGL
+ASRLLLQVHDELILEVPAAELEQATALLKERMGRAAELSVPLDVHVGRGRSWHDAAH
+>TT9_LFPAFLNI_01050
+MAADPTPEAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRPTHVAVAFDLSGPTFRSEEY
+GEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYP
+KKGVSDIPPMDADAVKAKYGVAPAQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKKGEALR
+EHLEDVRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERVFEVFGERVGEDAPPPEVEAAPEFTEA
+TTAEDVRAFLAAEAGTLLGVHVDVEGPALLPRRKVPVPGTFGTPVGVALVGEHAGLHVSLDGDAPDPALVGAVREALGEG
+GLAKAVHDLKRTLKALAAPTEGDGLGRDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGT
+FDLDGGQAAAERADRAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELTGIAVDVDALTGLREDFT
+VAADAAKESAWASVAEETGGMQVNLGSPKQLQDVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDAT
+KLRQTVEGLLETVAPDGRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIRGVFVADEVAGEQAVLLSADYSQIEMR
+IMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDDVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF
+DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLEEHGL
+ASRLLLQVHDELILEVPAAELEQATALLKERMGRAAELSVPLDVHVGRGRSWHDAAH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001248.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001248.fa
new file mode 100644
index 0000000000000000000000000000000000000000..df7ad5785f7a307671c7e1014be97a070801ff37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001248.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01795
+MTDHAERADAAPAPTSDLVYRPGVTPELTDAQREAACAAAGLTPELVAALGGATVSPLAQ
+KMGIRFLELTPERAVATMPVAGNEQPAGLLHGGAHLVLAESLGSMAAKLHAGPERGVVGI
+EIGATHHRAARSGLVTGTATAIHLGGTLTTHEVVMTDEQGRRLSTARITNMVLRGRG
+>KBS0714_MOLHKGIG_01100
+MSEHTETTPAA----SERVYRPGVTPELSPAELEAACAEAGLTPELVTALGGAVISPLAQ
+KMGLRFLELTAERAVATLPVAGNEQPVGLLHGGAHLVLAESLGSMAAKIHAGPDRNVVGV
+EISATHHRAVRSGLVTGTATAVHLGGTLVTHEVVMTDEQGRRLSTARITNLVLAPRP
+>KD337_NAFOICDF_01685
+MTDTTTAPERAQALLAGLTFHAGIRPELTDEERAALATAAGMTPAVQEALGGPAVSHLAL
+KMGIRFLELSAERSVATMPVAGNEQPVGLLHGGAHLVLAESLGSLSAKVHAGPHRGAVGT
+EIGATHHRSVRSGLVTGTATAIHLGRTLTTHEIVMTDEEGRRLSTVRMTNMLLDPR-
+>SA211_MHAAABBN_00819
+MSEHTATTPAA----SDRVYRPGVTPELSPAELAAACAEAGLTPELVAALGGAAISPLAQ
+KMGLRFLELTAERAVATLPVAGNEQPVGLLHGGAHLVLAESLGSMAAKIHAGPDRNVVGV
+EISATHHRAVRSGLVTGTATAVHLGGTLVTHEVVMTDEQGRRLSTARITNLVLAPRP
+>TT9_LFPAFLNI_01049
+MSEHTETTPAA----SERVYRPGVTPELSPAELEAACAEAGLTPELVTALGGAAISPLAQ
+KMGLRFLELTAERAVATLPVAGNEQPVGLLHGGAHLVLAESLGSMAAKIHAGPDHNVVGV
+EISATHHRAVRSGLVTGTATAVHLGGTLVTHEVVMTDEQGRRLSTARITNLVLDAR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001250.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001250.fa
new file mode 100644
index 0000000000000000000000000000000000000000..db8c5f4f1946ce574d03016f75c31609556098c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001250.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01797
+---MPVDYDWSHLGIDVAVALLAVAALVSAYRIVKGPLDADRAVSGDLLTFSILGMLVLF
+GVRMDNPFTFDLVLVAAIVAFLSGMSLARALTRGKR
+>KBS0714_MOLHKGIG_01098
+M--MPFAYDWSLVGIDLAIALLTVSALVSAYRIVVGPLDADRAVSGDLLTFSVLGMLVLF
+GVRADNPWTFDLVLIAAVVAFLSGMSLARALTRGKR
+>KD337_NAFOICDF_01687
+MSGLLQDYDWSLAGIDLAIALLLVAALVSAVRILRGPLDADRAVSGDLLTFSVLGMVVMF
+GVRAQNPFTFDLVLVAAIVAFLSGMSLARALTRGKR
+>SA211_MHAAABBN_00817
+M--MPFAYDWSLVGIDLAIALLTVSALVSAYRIVVGPLDADRAVSGDLLTFSVLGMLVLF
+GVRADNPWTFDLVLIAAVVAFLSGMSLARALTRGKR
+>TT9_LFPAFLNI_01047
+M--MPFAYDWSLVGIDLAIALLTVSALVSAYRIVVGPLDADRAVSGDLLTFSVLGMLVLF
+GVRADNPWTFDLVLIAAVVAFLSGMSLARALTRGKR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001251.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001251.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dce8a04ef160b2f02484fe28b4fc3bc6a100a23e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001251.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01798
+MHADPSSDRPVPADGTVVLAPGRASALSWPWRWLVFWCWYAWALVTSSEAVLKDLVTPGD
+QARSGIARIRSNCRTDAEVTLLSALITLTPGTLTLGTRRAGARGEEPGDPGATRLLYVHG
+LYADDADALRGEIHDMERRLLHAMRKQGVA-
+>KBS0714_MOLHKGIG_01097
+MH------TVAPADGTVDLAPGTASAVSWPWRWLVFWCWYAWALVTSSKAVIKDLVTPGV
+QARSGIARVRSNCRTDAEVTLLSALITLTPGTLTLGTRRAGAVGDEDGDPDARRLLYVHG
+LYADDADALRAEIHDMEARMLHAMRKTGVA-
+>KD337_NAFOICDF_01688
+M-------TVHHPDGGVDLTPGTASAASWPLRWLLFWCWYAWALVTSSGAVLHDLLTPGD
+QARSGIARVRSNCRTDAEVTLFSALITLTPGTLTLGTRREGAQGQEPGDPEARRLLYVHG
+LYADDADALRAEIHDMEARMLHAMRRTGVAR
+>SA211_MHAAABBN_00816
+MH------TVAPADGTVDLAPGTASAVSWPWRWLVFWCWYAWALVTSSKAVIKDLVTPGV
+QARSGIARVRSNCRTDAEVTLLSALITLTPGTLTLGTRRAGAVGDEDGDPDARRLLYVHG
+LYADDADALRAEIHDMEARMLHAMRKTGVA-
+>TT9_LFPAFLNI_01046
+MH------TVAPADGTVDLAPGTASAVSWPWRWLVFWCWYAWALVTSSKAVIKDLVTPGV
+QARSGIARVRSNCRTDAEVTLLSALITLTPGTLTLGTRRAGAVGDEDGDPDARRLLYVHG
+LYADDADALRAEIHDMEARMLHAMRKTGVA-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001260.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001260.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c97854fc9df50f4d2b9950f5890d578f106f4629
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001260.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01810
+MTVH-----------SKTAAALDAARRAGRTGLVAYLPAGYPSVDECVEAVVAAAENGAD
+VIELGLPYTDPVMDGPVIQAATQASLRAGFRVADVFEIIRRVTQRVDAAVLVMTYWNLVD
+RMGVDEFARRLAEAGGAGLVTPDLVPEEAGAWLEASDRHGLDRVFLTAPSSTDERVRLAV
+ESSRGFVYAVSVMGVTGARDAVSTAAETVVRRAEEAGAEHVCVGLGVSQAAHVREIGAYA
+DGAIVGTALVRALGEGGPQAVGALARELAAGAVREG
+>KBS0714_MOLHKGIG_01087
+MTVN-----------SKTAAALDAAKAAGRTGLVAFLPAGYPSVDECVEAVVAAADNGAD
+VIELGLPYTDPVMDGPVIQAATQAALQAGFHVADVFDIIRRVTQRTDAAVLVMTYWNLVD
+RMGVDEFARRLAEAGGAGLVTPDLVPEEAGAWMEASDRHGLDRVFLTAPSSTDERVRLTV
+DSSRGFVYAVSVMGVTGTRDAVSTVAETVVRRAQDAGAEHVCVGLGVSQAAHVREIGAYA
+DGAIVGTALVRALTDGGPQAVGALARELAAGAVREG
+>KD337_NAFOICDF_01698
+MSTPDQQHEATAEKPSTAGDAIERARAAGRTALIGYLPAGYPSIDESVEAAVQLGENGVD
+VIEIGLPYSDPVMDGPVIQAATSHALANGFHTRDVFEVVRRITERTEAAVVVMTYWNLVD
+RMGVDEFARRLAEAGGAGLVTPDLVPEEAGEWFEASEEHGLDRIFLTAPSSSDERVRLAV
+ESSRGFVYGVSVMGVTGARGKVSDAAERVVARAKAAGARNVCVGLGISSADHVREIGSYA
+DGAIVGTALVKALRDGGPEAVGALARELAAGTAKES
+>SA211_MHAAABBN_00806
+MTVH-----------SKTAAALDAAKAAGRTGLVAFLPAGYPSVDECVEAVVAAAENGAD
+VIELGLPYTDPVMDGPVIQAATQTALQAGFRVADVFDIIRRVTQRTDAAVLVMTYWNLVD
+RMGVDEFARRLAEAGGAGLVTPDLVPEEAGAWMEASDRHGLDRVFLTAPSSTDERVRLTV
+DSSRGFVYAVSVMGVTGTRDAVSTVAETVVRRAQDAGAEHVCVGLGVSQAAHVREIGAYA
+DGAIVGTALVRALTDGGPQAVGTLTRELAAGTVREG
+>TT9_LFPAFLNI_01036
+MTVH-----------SKTAAALDAAKAAGRTGLVAFLPAGYPSVDECVEAVVAAAENGAD
+VIELGLPYTDPVMDGPVIQAATQTALQAGFRVADVFDIIRRVTQRTDAAVLVMTYWNLVD
+RMGVDEFARRLAEAGGAGLVTPDLVPEEAGAWMEASDRHGLDRVFLTAPSSTDERVRLTV
+DSSRGFVYAVSVMGVTGTRDAVSTVAETVVRRAQDAGAEHVCVGLGVSQAAHVREIGAYA
+DGAIVGTALVRALTDGGPQAVGTLTRELAAGTVREG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001262.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001262.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fb0056952c944a310e270435fbf712e210d8718d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001262.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01812
+M--SVLQEIIDGVREDLAPRRRDVPEARLAELVAAAPAPRDAHAALLGGRTDPAGIRVIS
+EVKRSSPSKGALAEIPEPAALARAYERGGASAVSVLTEARRFGGSLADLDAVRGAVDLPV
+LRKDFTVTEYQIHEARAPGADLVLLIVAALDDAELTGFLQLTESLGMHALVEAHTPEEIE
+RGVTAGARILGVNVRNLKTLDVDPARYAALADGLPEDVVRVAESGVESDEQIKAYAAAGA
+DAVLVGEALVRHGAPEEALRAFRAASLTVR
+>KBS0714_MOLHKGIG_01085
+M--SVLQEIIDGVREDLEPRRRALPEARLSELVAATPAPRDAHAALHGGRTDPAGIRVIS
+EVKRASPSKGALAEIPEPATLARAYERGGASAVSVLTEARRFGGSLADLDAVRAAVDLPV
+LRKDFTVTEYQIHEARAHGADLVLLIVAALDDAELAGFLQLTESLGMHALVEAHTPEEIE
+RGVAAGARILGVNVRNLKTLDVDPARYAALADGLPEDVVRVAESGVESEEQIKAYAAAGA
+DVVLVGEALVRHGAPEEALRAFRAASLTVR
+>KD337_NAFOICDF_01700
+MPETVLDSIVAGVLEDLAPRREAVPEARLQELIAQAPAPRDAYAALRDGRSDPAGIHVIA
+EVKRRSPSKGALAEITEPAALAASYADGGAGAISVLTEQRRFGGSLADLDAVRAAVARPV
+LRKDFTVTEYQILEARAHGADLVLLIVASLDDARLRGFRELAESLGMHALVEAHTSEEIA
+RGVDSGARILGVNVRNLKTLDVDPDRYAALAGDLPEDVVRVAESGVESEAQVRQYAAAGA
+DAILVGEALVRHGAPADALRAFRAASLTVR
+>SA211_MHAAABBN_00804
+M--SVLQEIIDGVREDLEPRRRALPEARLAELVAAAPAPRDAHAALHGGRTDPAGIRVIS
+EVKRASPSKGALAEIPEPATLARAYERGGASAVSVLTEARRFGGSLADLDAVRAAVDLPV
+LRKDFTVTEYQIHEARAHGADLVLLIVAALDDAELAGFLQLTESLGMHALVEAHTPEEIE
+RGVAAGARILGVNVRNLKTLDVDPARYAALADGLPEDVVRVAESGVESEEQIKAYAAAGA
+DVVLVGEALVRHGAPEEALRAFRAASLTVR
+>TT9_LFPAFLNI_01034
+M--SVLQEIIDGVREDLEPRRRALPEARLAELVAAAPAPRDAHAALHGGRTDPAGIRVIS
+EVKRASPSKGALAEIPEPATLARAYERGGASAVSVLTEARRFGGSLADLDAVRAAVDLPV
+LRKDFTVTEYQIHEARAHGADLVLLIVAALDDAELAGFLQLTESLGMHALVEAHTPEEIE
+RGVAAGARILGVNVRNLKTLDVDPARYAALADGLPEDVVRVAESGVESEEQIKAYAAAGA
+DVVLVGEALVRHGAPEEALRAFRAASLTVR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001264.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001264.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7099ee4e0399ceebadcf6a05df6527bbfaa09f38
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001264.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01814
+MRRRTVVLAALAAGSLVLLAAGQTWVVGSGLTGGLSEEATTSGGAAAPGATAMALVVLAG
+ALALTTARRVGVVVVGALLVLAGIVIVTGAAGAALDPAGTAASAVAEATGTTAAAGSYAV
+TAWPWVAVTGGVLAALCGAVAALAGRGWVSVRRYEKAEATDAAEPAAPG-RAAAPGRTEA
+ERRRTEQMDAWDELSRGNDPT
+>KBS0714_MOLHKGIG_01083
+MRRRTVVLAALAAGALVLLTAGRTWVTATGLSGGIASEATTSGGAAAPVATAMALVVMAG
+ALALTTARRLGAVIVGVLMALAGVVIASTSVTAALDPATTAAAAVADATGTTALAQDYAV
+TAWPWVAAAGGVLAALCGVVAALAGRGWRSSRRYEKAPAASEPGPAAAGEQPAQSAREAA
+QRRRVDQMDAWDELSRGNDPT
+>KD337_NAFOICDF_01702
+MRRRWIVLAALLAGVLVLAATGQTWVTASGLEGSPVPQATAGGGRVAPVATALALVVMAG
+ALALTTARRVGVVLVGVLMTLAGVVIASTAVTAALDPVAAAAGAVSELTGTTAPAAAYAV
+SAWPWVSAAGGVMAAVLGVATLVVGPRWAASRRFESPATADEPAAAAP------------
+PSRHVDRMDAWDELSRGEDPT
+>SA211_MHAAABBN_00802
+MRRRTVVLAALAAGGLVLLTAGRTWVTATGLSGGIASEATTSGGAAAPVATAMALVVMAG
+ALALTTARRLGAVIVGVLMALAGVVIASTSVTAALDPATTAAAAVADATGTTALAQDYAV
+TAWPWVAAAGGVLAALCGVVAALAGRGWRSSRRYEKAPAASEPGPAAAGEQPAQSAREAA
+QRRRVDQMDAWDELSRGNDPT
+>TT9_LFPAFLNI_01032
+MRRRTVVLAALAAGGLVLLTAGRTWVTATGLSGGIASEATTSGGAAAPVATAMALVVMAG
+ALALTTARRLGAVIVGVLMALAGVVIASTSVTAALDPATTAAAAVADATGTTALAQDYAV
+TAWPWVAAAGGVLAALCGVVAALAGRGWRSSRRYEKAPAASEPGPAAAGEQPAQSAREAA
+QRRRVDQMDAWDELSRGNDPT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001265.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001265.fa
new file mode 100644
index 0000000000000000000000000000000000000000..97dd6045d873ed359c59819f659aeba7df6ab866
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001265.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01815
+MSAATTPSREEFLRLADTARVIPVVRTVLADGLTPLAIHRRLAGSRPGTFLMESAAPGAVWSRYSFVGAGSAVTLTSRDG
+QAHWQGVPPEGLPTEGRALDVLAACLRLLRTDARTHLDGALPHLVSGMAGFLGWNTVRAWERLPNPPQDDLGLPDLAMNL
+VTDLAVHDALDGTVTLIANAVNGNGLATGAEGAYEDALARLDAMVDQLAAPAAEPVSTVPRRWLDADADEVAAQAEDRWG
+AAGFREAVGKAQEAIRDGEVFQAVVSRRLSVTTGATGADVYRVLRMVNPSPYMYLFSFETPDGEPYEIVGSSPEALVTVQ
+DRRVVTHPIAGSRRRGATLEDDRLLGKDLMEDEKERAEHLMLVDLSRNDLSRVCRPGTVEVTQFMELEAFSHILHLVSHV
+EGRMREDVDALDVLRAAFPAGTLSGAPKPRALQLLDEWEPTERGPYGGVVGYFDLAGNMDMAINIRSATLHRGQAHVQAG
+AGVVADSDPDAETAETVTKATAPLRSVLTAGEMGRA
+>KBS0714_MOLHKGIG_01082
+MTAATTPSRAEFLRLADTARVIPVVRTVLADGLTPLAIHRRLAGSRPGTFLMESATPGAAWSRYSFIGAGSSVTLTSRNG
+EAHWQGTPPEGLPTQGRALDVLAACLRLLRTDVRAEVGGVLPHLVSGMAGFLGWNTVRAWERLPHPPEDHLGLPDLAMNL
+VTDLAVHDALDGTVTLIANAVNGNGLATGADRAYDDALARLDAMVERLAAPAADPVSDVPRRWLEADADEVAAQAEDRWG
+AEGFREAVAKAQRAIRDGDVFQAVVSRRLSVTTDATGLDVYRVLRTVNPSPYMYLFSFETPDGEPYEIVGSSPEALVTVR
+DRRVVTHPIAGSRRRGATEKDDRLLGKDLLEDEKERAEHLMLVDLSRNDLSRVCRPGTVEVTQFMELEAFSHILHLVSHV
+EGRMRDDVDALDVLRAAFPAGTLSGAPKPRALQLLDEWEPTERGPYGGVVGYFDLAGNMDMAINIRSATLHRGQAHVQAG
+AGIVADSDPDAETAETVTKATAPLRSVLTAGELGQA
+>KD337_NAFOICDF_01703
+M-SGVVPSREEFLAVAPTSRVIPVVRRVLADGLTPLAIHRRLADSRPGTFLLESATPGAAWSRYSFIGAGSAATLTARGE
+DAVWLGEPPEGLPTEGRALDVLAESLRLLSTDARTRVDAALPHLVSGMAGFLGWPAVRAWERLPHPPEDHLGLPLLAMNL
+ISDLAVHDAQDGTVTLIALAINGDGLATGAERAYDDAVARLEDMVARLRAGAEDPVDEVPRRWLDATAEEVAAEAEDRWG
+AAGFRDAVGRAQQAITDGEVFQIVVSRRFSVDTAASGVDVYRVLRMVNPSPYMYLFSFQTPDGEPYEIVGSSPEALVTVQ
+DRRVVTHPIAGSRRRGATPEDDRLLGKELAEDEKERAEHLMLVDLSRNDLSRVCEAGTVEVTQFMELEAFSHILHLVSHV
+EGRLRDDVTSLDALRSAFPAGTLSGAPKPRALQLLDEWEPTERGPYGGVVGYFDLAGNMDMAINIRSVTLAGRQAHVQAG
+AGIVADSDADAETAETVTKATAPLRAVLTAAELRGA
+>SA211_MHAAABBN_00801
+MTAATTPSRAEFLRLADTARVIPVVRTVLADGLTPLAIHRRLAGSRPGTFLMESATPGAAWSRYSFIGAGSAVTLTSRDG
+EAHWQGTPPEGLPTQGRALDVLAACLRLLSTDVRAEVGGVLPHLVSGMAGFLGWNTVRAWERLPHPPEDHLGLPDLAMNL
+VTDLAVHDALDGTVTLIANAVNGNGLATGADRAYDDALARLDAMVERLTAPAADPVSDVPRRWLEADADEVAAQAEDRWG
+AEGFREAVGKAQRAIRDGEVFQAVVSRRLSVTTDATGLDVYRVLRMVNPSPYMYLFSFETPDGEPYEIVGSSPEALVTVR
+DRRVVTHPIAGSRRRGATAEDDRLLGKDLLEDEKERAEHLMLVDLSRNDLSRVCRPGTVEVTQFMELEAFSHILHLVSHV
+EGRMRDDVDALDVLRAAFPAGTLSGAPKPRALQLLDEWEPTERGPYGGVVGYFDLAGNMDMAINIRSATLHRGQAHVQAG
+AGIVADSDPDAETAETVTKATAPLRSVLTAGELGQA
+>TT9_LFPAFLNI_01031
+MTAATTPSRAEFLRLADTARVIPVVRTVLADGLTPLAIHRRLAGSRPGTFLMESATPGAAWSRYSFIGAGSAVTLTSRDG
+EAHWQGTPPEGLPTQGRALDVLAACLRLLSTDVRAEVGGVLPHLVSGMAGFLGWNTVRAWERLPHPPEDHLGLPDLAMNL
+VTDLAVHDALDGTVTLIANAVNGNGLATGADRAYDDALARLDAMVERLTAPAADPVSDVPRRWLEADADEVAAQAEDRWG
+AEGFREAVGKAQRAIRDGEVFQAVVSRRLSVTTDATGLDVYRVLRMVNPSPYMYLFSFETPDGEPYEIVGSSPEALVTVR
+DRRVVTHPIAGSRRRGATAEDDRLLGKDLLEDEKERAEHLMLVDLSRNDLSRVCRPGTVEVTQFMELEAFSHILHLVSHV
+EGRMRDDVDALDVLRAAFPAGTLSGAPKPRALQLLDEWEPTERGPYGGVVGYFDLAGNMDMAINIRSATLHRGQAHVQAG
+AGIVADSDPDAETAETVTKATAPLRSVLTAGELGQA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001274.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001274.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8ea003f9ef76867d0b350caf9e4bc3ba95e0c3f8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001274.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_01826
+MSGEGQGRQGRGRGGSGGGSRGGAGGGSRGGSRNGSGGGPRGGSHGGPRGGSGGARRES-GGEERRDAQGRTRSRGRSGA
+GRRYSAQAPAQRSRTADPARRVAFEVIRAVHAEDAYANLVLPGRIRQARLDRRDAGFATELAYGTLRGIGLYDAVLARCV
+DRPLEKIDPPVLDALRLGAHQLLAMRVPAHAALDATVALVRAEIGAGPSGFVNAVLRRVAERPLEDWLADVAPAEGGDAA
+LAVRASHPVWIVRALRQALAAHRGTRHVADRDAELGALLEADNASPVVNLVALPVPGGREGLSAALEDGAEPGPLAPDSA
+LHAGGDAGRLTGVREGVLRVQDAGSQLTARALAAAPAAAAEGR------PERWLDLCAGPGGKAALLAALAAERGATLVA
+NEVAEHRAELVRQALGAVPAAAWTVRAGDGRAIA-DAPEAAGGFDRVLVDAPCTGLGALRRRPESRWRRTPADLAELTGL
+QSELLDAAAAVLAPGGVLAYVTCSPHVAETTVQVQDLLRRRPELELLDAGAVLSEVALGDLRLDEGEPGGDEAAGAAAPD
+D-VAARTAQLWPHRHGTDAMFLALLRAPSDTPESPERTRG
+>KBS0714_MOLHKGIG_01060
+MSREGQ-------AGQ--------------------GRGERGA-----RGERGRAPRPD--PQDRRDAQGRTRNRGRSGA
+GRKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCV
+DRPLEQIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEIGAGASGFVNAVLRRVAERPLEEWLADVAPADGGDAA
+LAVRASHPVWIVRALRQALAAHRGTRHIADRDAELAALLEADNAPPVVNLVALPVAGGAEALAAALDDGAEPGPLAPDSA
+LHSGGDAGRLPGVREGVLRVQDAGSQLTARALAQAPVPAAEGR------AERWLDLCAGPGGKAALLAALAAERGATLVA
+NEVAPHRADLVRQALAAVPADAWTVRTGDGRTIA-DAPEAAPAFDRVLVDAPCTGLGALRRRPESRWRRTPADLAELTGL
+QAELLDAAVSVLAPGGVLAYVTCSPHVAETVVQVQDLVRRHPELELLDARTALDTVALDDLRLDEAEP-----AGAPKPG
+D-VVARTAQLWPHRHGTDAMFLALLRAPG----------A
+>KD337_NAFOICDF_01716
+MSAGQDGSTGRG-AGQG-------------------GRGRGGA-----EGRQGPGGRQGAGGQDRRDAQGRQLNRGASGT
+GRHRTTLAPKERARRADPARRVAFEVVRAVHAEDAYANLVLPARIRQGRLDRRDAGFATELTYGTLREQGLYDAVLARCV
+DRALDALDAPVLDALRLGAHQLLGMRVPAHAALDATVALVRAEVGAGPAGFVNAVLRRVSERPREDWLAEVAPADGGDTA
+RAVRHSHPAWIVRALRQALAGHPGTADVEDRDAELEALLVADNAAPVVNLVGLPVPGGREALASALGDGAEPHPLTPDAA
+LHAGGDAGRLPGVREGVLRVQDAGSQLTARALAA--VPAASGRDAGGRKAERWLDLCAGPGGKAALLAALASERGATVLA
+NEVAPHRADLVRSALAGVPASAWEVRTGDGRTIAEDAP--AGGFDRILVDAPCTGLGALRRRPESRWRRTPADLAELTGL
+QAELLDAAVGVLAPGGVLAYVTCSPHVAETLVQVQDLLRRHPVLEQLDAPAALQDVAVADLGL-----------AAPEDA
+DPVLARTAQLWPHRHGTDAMFLALFRAPV----------A
+>SA211_MHAAABBN_00779
+MSRERQ-------PGQ--------------------GRGERGA-----RGERGRAPRPD--AQDRRDAQGRTRNRGRSGA
+GRKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCV
+DRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEIGAGASGFVNAVLRRVAERPLEEWLADVAPADGGDAA
+LAVRASHPVWIVRALRQALAAHRGTRHTADRDAELAALLEADNAPPVVNLVALPVAGGAEALAAALDDGAEPGPLAPDSA
+LHSGGDAGRLPGVREGVLRVQDAGSQLTARALAQAPVPAAEGR------AERWLDLCAGPGGKAALLAALAAERGATLVA
+NEVAPHRADLVRQALAAVPAGAWTVRTGDGRTIA-DAPEAAPAFDRVLVDAPCTGLGALRRRPESRWRRTPADLAELTGL
+QAELLDAAVAVLAPGGVLAYVTCSPHVAETVVQVQDLVRRHPELELLDARTALDAVALDDLRLDEAEP-----AGAPEPG
+D-VVARTAQLWPHRHGTDAMFLALLRAPG----------A
+>TT9_LFPAFLNI_01007
+MSRERQ-------PGQ--------------------GRGERGA-----RGERGRAPRPD--PQDRRDAQGRTRNRGRSGA
+GRKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCV
+DRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEIGAGASGFVNAVLRRVAERPLEEWLADVAPADGGDAA
+LAVRASHPVWIVRALRQALAAHRGTRHIADRDAELAALLEADNAPPVVNLVALPVAGGAEALAAALDDGAEPGPLAPDSA
+LHSGGDAGRLPGVREGVLRVQDAGSQLTARALAQAPVPAAEGR------AERWLDLCAGPGGKAALLAALAAERGATLVA
+NEVAPHRADLVRQALAAVPADAWTVRAGDGRTIA-DAPEAAPAFDRVLVDAPCTGLGALRRRPESRWRRTPADLAELTGL
+QAELLDAAVAVLAPGGVLAYVTCSPHVAETVVQVQDLVRRHPELELLDARTALDAVALDDLRLDEAEP-----AGAPKPG
+D-VVARTAQLWPHRHGTDAMFLALLRAPG----------A
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001278.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001278.fa
new file mode 100644
index 0000000000000000000000000000000000000000..af394a42b640222e52467e1023ee12a22d1d0c5e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001278.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01834
+MAQIVHLADRSPQVTPDQLLAGFHPSYRFGEVSFDTYIPDPAHPSQAQAVERLRRFAAAL
+G--RGSGSGGGFLSGLFGGGRKRAAGPAGIYLDGGFGVGKTHLLASTWHAAPGPKAFGTF
+VEYTNLVGALSFRKAVDVLKEYTLVCIDEFELDDPGDTVLMSRLMRELADAGVHLVATSN
+TLPGSLGEGRFAAQDFQREIQVLAEQFEVIRVDGEDYRHRGLSAAPDPLPDDQVVSTAEA
+NFPDSGVLAVDDFDALTAMLSRVHPSRYRELVKDVDVIALHDVKTITEQATALRFVVFAD
+RLYDKDVPVVASGVPFDDLFTQEMMHGGYMKKYFRTVSRMTALVREGQLGIAEEK
+>KBS0714_MOLHKGIG_01052
+MAQIVHLADRSPQVTPDQLLAGFHPSYRFGTVSFDTYIPDPAHPTQAQAVERLRRFAADL
+G--RG-GSGGGFLGGLF-GGKKRAAGPAGIYLDGGFGVGKTHLLASTWHAAPGPKAFGTF
+VEYTNLVGALSFRKAVDELKEYTLVCIDEFELDDPGDTVLMSRLMRELADAGVRLVATSN
+TLPGSLGEGRFAAQDFKREIQVLADQFEVIRVDGEDYRHRGLSAAPSPLDDAAVEATAQE
+NFPDAGVLAVDDFADLTAMLSRVHPSRYRELVKDVDVLALHDVHTITEQATALRFVVFAD
+RLYDKDVPVLASGVPFDALFTQEMMHGGYMKKYFRTVSRMTALVREGQTGVAEHK
+>KD337_NAFOICDF_01724
+MPQTVHLADRSPQVSADQLLAGLHPSYRFGEVSFDSYIPDPAHPSQAQAVERLRRFAASL
+GGPRGGSGGGGFLGGLFGGGRKRGPEPAGIYLDGGFGVGKTHLLASTWHAAPGPKAFGTF
+VEYTNLVGALSFRQAVDVLKGYTLVCIDEFELDDPGDTVLMSRLMRELADAGVRLVATSN
+TLPGSLGEGRFAAQDFKREIQVLADQFEVIRVDGEDYRHRGLSAAPEPLADDAVESTAQA
+NFPHADVVSVDDFAALTAMLSRVHPSRYRELVKDVDVAAFHDVQTITEQATALRFVVFAD
+RLYDKDVPVVASGVPFDQLFTSEMMHGGYMKKYFRTVSRMTALVREGQTGETVEK
+>SA211_MHAAABBN_00765
+MAQIVHLADRSPQVTPDQLLAGFHPSYRFGTVSFDTYIPDPAHPSQAQAVERLRRFAADL
+G--RG-GSGGGFLGGLF-GGKKRAAGPAGIYLDGGFGVGKTHLLASTWHAAPGPKAFGTF
+VEYTNLVGALSFRKAVDELKEYTLVCIDEFELDDPGDTVLMSRLMRELADAGVRLVATSN
+TLPGSLGEGRFAAQDFKREIQVLADQFEVIRVDGEDYRHRGLSAAPSPLDDAVVEATAQE
+NFPDAGVLAVDDFADLTAMLSRVHPSRYRELVKDVDVLALHDVHTITEQATALRFVVFAD
+RLYDKDVPVLASGVPFDALFTQEMMHGGYMKKYFRTVSRMTALVREGQTGVAEHK
+>TT9_LFPAFLNI_00993
+MAQIVHLADRSPQVTPDQLLSGFHPSYRFGTVSFDTYIPDPAHPSQAQAVERLRRFAADL
+G--RG-GSGGGFLGGLF-GGKKRAAGPAGIYLDGGFGVGKTHLLASTWHAAPGPKAFGTF
+VEYTNLVGALSFRKAVDELKEYTLVCIDEFELDDPGDTVLMSRLMRELADAGVRLVATSN
+TLPGSLGEGRFAAQDFKREIQVLADQFEVIRVDGEDYRHRGLSAAPSPLDDAAVEATAQE
+NFPDAGVLAVDDFADLTAMLSRVHPSRYRELVKDVDVLALHDVHTITEQATALRFVVFAD
+RLYDKDVPVLASGVPFDALFTQEMMHGGYMKKYFRTVSRMTALVREGQTGVAEHK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001279.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001279.fa
new file mode 100644
index 0000000000000000000000000000000000000000..84af6fd0149d077a23ca9a9719c7b2fe8761c4bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001279.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01835
+MTETATEFSQYAHPEKLVSTQWVADHVGEEGVVVLESNEDALLYATGHIPGAQRIDWHTE
+LNDPVTRDFIGPEAFAEMAASKGISRDTTVVFYGDKSNWWAAYALWVFTLYGHEDVRLMN
+GGRDKWIAEGRETTREVPTVARG-EYPVVPRDDTTERAAREDVLQAVGTTPLIDVRSRPE
+YTGETTHMDGYPQEGTLRGGHIPTAASVPWAQAANEDGTFKSREELEAVYRDGAGLKDGD
+DVIAYCRIGERSSHTWFVLKHLLGHENVRNYDGSWTEWGNSVRLPIVVGEEPGAAPAR
+>KBS0714_MOLHKGIG_01051
+MTDTAAKFSEYAHPEKLVSTQWVADHVGDEDVVVLESNEDALLYSTGHIPGAQRVDWHTE
+LNDPVTRDFVGPEAFAEFAASKGISRDTTVVFYGDKSNWWAAYALWVFTLYGHEDLRLMD
+GGRDKWIAEGRETTREVPTVARA-EYPVIERDDHTERAAREDVLQAIGTTPLIDVRSRPE
+YTGETTHMAGYPQEGTLRGGHIPTAASVPWASAANEDGTFKSRAELEQVYRAGAGLQEGD
+DVIAYCRIGERSSHTWFVLKYLLGHEDVRNYDGSWTEWGNAVRLPIAVGEEPGEAPAR
+>KD337_NAFOICDF_01725
+MTETPAEFAEYAHPEKLVSTQWVADHIDDEGVVVLESNEDTLLYSTGHIPGAVKIDWHTE
+LNDPVSRDFVGPEAFAELVASKGIGPDTTVVFYGDKSNWWAAYALWVFTLYGHRDVRLMN
+GGRDKWIAEGRPTTREVPEVTPAPSYPVSQRDDATDRAAREDVLAAIGSTPLVDVRSPKE
+YTGETTHMDGYPQEGTLRGGHIPTAASVPWAKAANEDGTFKSRAELEEIYKEGAGLGESD
+SVIAYCRIGERSSHTWFVLKQLLGYENVRNYDGSWTEWGNGVRLPIALGDEPGEAPAR
+>SA211_MHAAABBN_00764
+MTDTAAKFSEYAHPEKLVSTQWVADHVDDEDVVVLESNEDALLYSTGHIPGAQRVDWHTE
+LNDPVTRDFVGPEAFAEVAASKGISRDTTVVFYGDKSNWWAAYALWVFTLYGHEDLRLMD
+GGRDKWIAEGRETTREVPTVARA-EYPVIERDDHTERAAREDVLQAIGTTPLIDVRSRPE
+YTGETTHMAGYPQEGTLRGGHIPTAASVPWASAANEDGTFKSRAELEQVYRTDAGLREGD
+DVIAYCRIGERSSHTWFVLKYLLGHEDVRNYDGSWTEWGNAVRLPIAVGEEPGEAPAR
+>TT9_LFPAFLNI_00992
+MTDTAAKFSEYAHPEKLVSTQWVADHVGDEDVVVLESNEDALLYSTGHIPGAQRVDWHTE
+LNDPVTRDFVGPEAFAEFAASKGISRDTTVVFYGDKSNWWAAYALWVFTLYGHEDLRLMD
+GGRDKWIAEGRETTREVPTVARA-EYPVIERDDHTDRAAREDVLQAIGTTPLIDVRSRPE
+YTGETTHMAGYPQEGTLRGGHIPTAASVPWASAANEDGTFKSRAELEQVYRAGAGLQEGD
+DVIAYCRIGERSSHTWFVLKYLLGHEDVRNYDGSWTEWGNAVRLPIAVGEEPGEAPAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001281.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001281.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7c1abcc0fb957fb757db619f539fe7c6e9790bbf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001281.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01837
+MAKTGRGRGRAHGAATPAVAALETAGVPYTLHTFEVDLDAGGERFGVQVARAMGVPPERM
+FKTLMVAAPDGGLAACVVPVSGQLDLRAAAAVLGVKRLALADLALVERRTGYVRGGVSPL
+GQRHRHPVLLDSSALDAPVMYVSGGQRGLDLELAPADLAAATDAVVAPIAAR
+>KBS0714_MOLHKGIG_01049
+MGQRKKDRGARHGAATPAVAALEAAGVPYRLHTFDVALDAGGERFGVQVARALSVPADRL
+FKTLMVADPDGALAACVVPVSGQLDLRAAAAVLGVKRLALADLAVVERRTGYVRGGVSPL
+GQRRPHPVVLDSSALDAELMYVSGGQRGLDVEIAPADLVRVTGAVVAEIAAG
+>KD337_NAFOICDF_01727
+MGRR-KAADAAHGAATPAIRALVDAGVPHRVLSFDVHLDAVGERFGVQAAKALGVPPERT
+FKTLMVALPDGSLAACCVPVSGQLDLRAAATALGVKKVAMADLAVAERRTGYVRGGISPL
+GQRQRHPVVVDSSALDGDVLYVSAGQRGRDLELAPADLVAVTDAVVAPIAAR
+>SA211_MHAAABBN_00762
+MGQRKKDRGARHGAATPAVAALEAAGVPYRLHTFDVALDAGGERFGVQVARALSVPADRL
+FKTLMVADPDGALAACVVPVSGQLDLRAAAAVLGVKRLALADLAVVERRTGYVRGGVSPL
+GQRRPHPVVLDSSALDAELMYVSGGQRGLDVEIAPADLVQVTGAVVAEIAAD
+>TT9_LFPAFLNI_00990
+MGQRKKDRSARHGAATPAVAALEAAGVPYRLHTFDVALDAGGERFGVQVARALSVPADRL
+FKTLMVADPDGALAACVVPVSGQLDLRAAAAVLGVKRLALADLAVVERRTGYVRGGVSPL
+GQRRPHPVVLDSSALDAELMYVSGGQRGLDVEIAPADLVQVTGAVVAEIAAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001283.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001283.fa
new file mode 100644
index 0000000000000000000000000000000000000000..485a3829b3320e34417d631ecaeef745615aca0b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001283.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01841
+MT----------RPEASDADARDLARASADASATDGFALPGAPDAFERFWNAHRMAYVTQ
+GSDQVKDEHTCPFCAAPQRSDEASLIVHRGRAAYVVLNLYPYNPGHLLVCPYRHVPLYTD
+TTAEEAAEMAELTQTAMLALGHATRAAGYNLGMNQGSVAGAGIAAHLHQHVVPRWTGDGN
+FLPIIARTKNMSQTLGETREILAGVWDEAAADHARLQEANARAAAERAGRRDEDRP-
+>KBS0714_MOLHKGIG_01047
+MT----------SPGTGGSDARAQARASADAAATDGFELPGAPDAFERFWNAHRMAYVSK
+GTGQVKDEHTCPFCAAPQRDDEDSLIVHRGRTAYVVLNLYPYNPGHLLVCPYRHVPLYTD
+TTTEEAAEMAELTQTAMLALGQAAGASGYNLGMNQGAVAGAGIAAHLHQHVVPRWTGDGN
+FLPIIARTKNMSQTLGETRQILADVWDRAAQDHAARQAANARAAGE-HPRPGAGGPA
+>KD337_NAFOICDF_01729
+MTTTPHDDAAEVSADGAPAGERPYGDPAADAAALDGFELPGTPDAFDRLWNPHRLAYIQK
+GPEQVKDEDTCPFCAAPGRDDASALIVHRGATCFVILNLFPYNPGHLLICPYRHIPMYTD
+ATAEETAELADLAQTAMIAFELATRPKGYNLGMNQGVAGGAGIAAHLHQHVVPRWTGDGN
+FLPIIAQTKNMSQTLGQTREILADVWPQALAEHAERRARNAAAAAQ-APRADA----
+>SA211_MHAAABBN_00760
+MT----------SPGTGGSDARAQARASADAAATDGFELPGAPDAFERFWNAHRMAYVSK
+GTGQVKDEHTCPFCAAPQRDDEDSLIVHRGRTAYVVLNLYPYNPGHLLVCPYRHVPLYTD
+TTTEEAAEMAELTQTAMLALGQAAGASGYNLGMNQGAVAGAGIAAHLHQHVVPRWTGDGN
+FLPIIARTKNMSQTLGETRQILADVWDRAARDHAARQAANARAAGE-HPRPGAGGPA
+>TT9_LFPAFLNI_00988
+MT----------SPGTGGSDARAQARASADAAATDGFELPGAPDAFERFWNAHRMAYVSK
+GTGQVKDEHTCPFCAAPQRDDEDSLIVHRGRTAYVVLNLYPYNPGHLLVCPYRHVPLYTD
+TTTEEAAEMAELTQTAMLALGQAAGASGYNLGMNQGAVAGAGIAAHLHQHVVPRWTGDGN
+FLPIIARTKNMSQTLGETRQILAGVWDRAARDHAARRAANARAAAE-HPRPGAGDPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001287.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001287.fa
new file mode 100644
index 0000000000000000000000000000000000000000..840988104afd50b24544e55dac6347686dcc831f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001287.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01846
+MCGRYVMARAAGDLVALGGGELPDERLELRRSWNVAPTSDVPILLEREAD----------
+--GAVRRELHVARWGLVPSWAKELAVGSRAFNARSETVASKPTFRAAVRARRCAVPVEGY
+YEWKAPAPGAKGPDGKAAKKQPYYVHPAGAGDGEGPVIWFAGLYEWWQDPEAEAAGRDPW
+VLSTTILTMAAPDADDEDEVLGSLGDLHDRLPVPLDAETMDAWLTPGRLGSAEEADALVG
+QVCAGAYDVAAGWVLRPVGTAVGNVRNDGPELIQAEEPAQGTLL
+>KBS0714_MOLHKGIG_01039
+MCGRYVMARATSDLVALGDAE-ANEDLVLRQSWNVAPTAEVPILVAHADDVGAGGTRGGD
+GGAGVTRRIHVARWGLVPPWAKELSVGSRAFNARSETVASKPTFRAAVRARRCAVPVEGY
+YEWKTPEPGAKGPDGRIAKKQPYYVHPAGAGDGEGPVIWFAGLYEWWQDPEAKAAGEDAW
+VLSTTILTMAAPDADDDDPVLAALGQLHDRLPVPMDAETMDRWLAPDTLGSAEEADALVG
+QVCAGAYDVAAGWSLRPVGSAVGNVRNNGPELIQEMREQQGTLL
+>KD337_NAFOICDF_01736
+------MARAAGDLVALGGGLLPEEGLELRPNWNVAPTADVPILLEREDA----------
+--GVVRRELHVARWGLVPTWAKELSVGSRAFNARSETVTSKPTFRSAVRARRCAVPVEGY
+YEWKAPEPGSTGPDGKAAVKQPFYVHPAGGGDGEGPVIWFAGLYEWWKDAGAEARGDDPW
+VLSTTILTMPSP-ADDEPGVLGELADLHDRLPMPMGPAAMDSWLSPDKLGSADEAAALVD
+EMTAQAYDVARGWELRPVGRAVGNVRNNGPELIAPPAEVQDALL
+>SA211_MHAAABBN_00752
+MCGRYVMARATSDLVALGDAE-ANEDLVLRQSWNVAPTAEVPILVAHADDVGAGGARGGD
+GGAGVTRRIHVARWGLVPPWAKELSVGSRAFNARSETVASKPTFRAAVRARRCAVPVEGY
+YEWKAPEPGAKGPDGRAAKKQSYYVHPAGAGDGEGPVIWFAGLYEWWQDPEAKAAGEDAW
+VLSTTILTMAAPDADDDDPVLAALGQLHDRLPVPMDAETMDRWLAPDTLGSAEEADALVG
+QVCAGAYDVAAGWSLRPVGSAVGNVRNNGPELIQEMREQQGTLL
+>TT9_LFPAFLNI_00981
+MCGRYVMARATSDLVALGDAE-TNEELVLRQSWNVAPTAEVPILVAHADDV---------
+-GAGVTRRIHVARWGLVPPWAKELSVGSRAFNARSETVASKPTFRAAVRARRCAVPVEGY
+YEWKTPEPGAKGPDGRAAKKQPYYVHPAGAGDGEGPVIWFAGLYEWWQDPEAKAAGEDAW
+VLSTTILTMAAPDADDDDPVLAALGQLHDRLPVPMDAETMDRWLAPDTLGSAEEADALVG
+QVCAGAYDVAAGWSLRPVGSAVGNVRNNGPELIQEMREQQGTLL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001295.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001295.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7744359d69ff21ca93d059cac8102ef2da905c24
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001295.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01860
+-MTVAADPGHIRSAEAQGLVPTDAGLIYFSSASNYTHRFVQKLELPEDRVARLPLITREP
+TLGATAPYVLLTPTYGGGDGPGA-VPKQVIKFLNVPGNRTWIRGVIASGNTNFHEAYCLA
+GYIIARKCQVPLMYKFELMGTPEDVDSVRGGLEGL----WT
+>KBS0714_MOLHKGIG_01025
+-MTVAADPSHIRSAEAQGLVPTDAGLIYFSSASNYTHRFVEKLELPEDRVARLPLITREP
+TLGATAPYVLMTPTYGGGSGPGA-VPKQVIKFLNVPENRHWIRGVIASGNTNFHEGYCLA
+GYIISRKCQVPLMYKFELMGTPDDVERVRGGLEGM----WT
+>KD337_NAFOICDF_01750
+MTTATAGPNHMRDAEAQGLVPTDARLIYFSSASGYTHRFVEKLGLPLGQAARLPLLTREP
+TLGATAPYVLLTPTYGGGGDTGGEVPKQVIKFLNVPGNRALIRGVIASGNTNFSGAYAAA
+GYIISRKCQVPLMYKFELMGTPEDVVAVREGLERLEEGQHA
+>SA211_MHAAABBN_00740
+-MTVAADPSHIRSAEAQGLVPTDAGLIYFSSASNYTHRFVEKLELPEDRVARLPLITREP
+TLGATAPYVLMTPTYGGGSGPGA-VPKQVIKFLNVPENRHWIRGVIASGNTNFHEGYCLA
+GYIISRKCQVPLMYKFELMGTPDDVERVRGGLEGL----WT
+>TT9_LFPAFLNI_00969
+-MTVAADPSHIRSAEAQGLVPTDAGLIYFSSASNYTHRFVEKLELPEDRVARLPLITREP
+TLGATAPYVLMTPTYGGGSGPGA-VPKQVIKFLNVPENRHWIRGVIASGNTNFHEGYCLA
+GYIISRKCQVPLMYKFELMGTPDDVERVRGGLEGL----WT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001297.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001297.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c0d3b2572d6a65c8a41c1f25d353f8719af08884
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001297.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01865
+MTAR---DAAGGPAV-TRNDAESRYELHDG-GTLLAVLDYRDNGTAVALTRAFTIPVHRG
+HGHAATLTAGAVEDIEARGGAAGGRQIVPLCWYVAQWLEEHPEKAHLVAPR
+>KBS0714_MOLHKGIG_01023
+--------MSTSPTV-TRNDAESRYELHDG-GTLLAVLDFRDNGAAVSLNRAFTIPVHRG
+RGHAAALTAGAVEDIATNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPR
+>KD337_NAFOICDF_01758
+M------DASDSPTTFTRNDAASRYELHDASGELLAALDYRDNGTAVSLTRAFTVPVHRR
+QGHAATLTAGAVADIEARGGAAGGTTVVPMCWYVARWFEEHPEKAGLLDAR
+>SA211_MHAAABBN_00738
+--------MSTSPTV-TRNDAESRYELHDG-GTLLAVLDFRDNGAAVSLNRAFTIPVHRG
+RGHAAALTAGAVEDIETNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPR
+>TT9_LFPAFLNI_00967
+MTTGGCPGMSTSPTV-TRNDAESRYELHDG-GTLLAVLDFRDNGAAVSLNRAFTIPVHRG
+RGHAAALTAGAVEDIATNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001299.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001299.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0773d46b4490c92bbee999087c70ab0af4071904
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001299.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01867
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------MTGPAAPWESIDAAPVHVEVHQDGERIVGASVEHTQMNEAG
+ELDPDPQTVGWYGAPQWGTDPGERSPYAGILAGHVVYYGVKDVFWNLDAVRAGDVVVLTY
+DDGSQAVFEADADAVSVEKEALTQDPANRWAWEPGGDDARLTLITCDLVPGTGMAGNAFN
+NWVVQATRVA
+>KBS0714_MOLHKGIG_01020
+MNTTVRRALWVVLVLLCLGLVFLALRGVLAVGAVPISAAPTLSA---TASATPSPSPSPS
+SARFTPSPATTATPTPTPSPSSASPTREAAVPVETQELAGTPTPSEEPTPTEEPAPSEEP
+APSEEPTPAAA------AHLSGPAAPWDEVTATPVHVDVHQDGEQIVGAGIDLTQLDEGG
+DLDPEPQTVGWYGPPQWGTTPGERSRYAGVLAGHVVYHGVRDVFWNLGDVRAGAVVVVTY
+DDGTQAAFEADSDAVSVEKEALTQDPANRWAWEPGGDDAKVTLITCDLVPGTGMAGNAFN
+NWVVQATRVA
+>KD337_NAFOICDF_01763
+MSTTVKRAVWALLLLICLGVGAFALRGMFAFGDVPISAAPTVSARASTASSTPSAATGSP
+SSTSASASAGPSVPAATSASSAAASTTTPASPTSSTTTPASPTSSTTPASTEAAAPAVGA
+ASSTATASSSATPTGTDSRMTKPAASWERITAAPVHIDVYADGEQVVGAPVELVQTRDDG
+ELNPDPQMAGWYGPPQWTTTPGERSAHPGVIAGHVIHSGLKDVFWNLQTLKAGSIVVITY
+DDGTQAEFRTDFDVRSMDKDDLTQSPDYAWAWELPEAGNKVTLITCDLVDGSGMTGWSTN
+NWVTQATRIG
+>SA211_MHAAABBN_00734
+MNTTVRRALWVVLVLLCLGLVFLALRGVLAVGAVPISAAPTLSA---TASATPSPSPSPS
+SARFTPSPAPTATPIPTPSPSSASPTREAAVPVETQELAGTPTPSEEPTPTEEPAPSEEP
+APSEEPTPAAA------AHLSGPAAPWDEVTATPVHVDVHQDGEQIVGAGIDLTQLDEGG
+DLDPEPQTVGWYGPPQWGTTPGERSRYAGVLAGHVVYYGVRDVFWNLGDVRAGAVVVVTY
+DDGTQAAFEADADAVSVEKEALTQDPAHRWAWEPGGDDAKVTLITCDLVPGTGMAGNAFN
+NWVVQATRVA
+>TT9_LFPAFLNI_00964
+MNTTVRRALWVVLLLLCLSLVFLALRGVLAVGAVPISAAPTLSA---TASV---------
+------------------SPSSAATTREAAVPVETQELAGTPTPSEEPTPT------EEP
+APSEEPTPAAA------AHLSGPAAPWDEVTATPVHVDVHQDGEQIVGAGIDLTQLDEGG
+DLDPEPQTVGWYGPPQWGTTPGERSRYAGVLAGHVVYHGVRDVFWNLGDVRAGAVVVVTY
+DDGTQAAFEADADAVSVEKEALTQDPSHRWAWEPGGDDAKVTLITCDLVPGTGMAGNAFN
+NWVVQATRVA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001300.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001300.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5ac8560964ba00932787ec8f1c96c99bf63a9ac5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001300.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01868
+----------------MEERLLRAFVTVAEAGTVSAAAQRLDLVQSALSRQLQRLQRELR
+LPLFARVGSRLELTTAGEAFLPVARRVLAAHRQAEQAARTLASGSLAEVAIAAPGTTLID
+VVLPFVATLDEDDPRPRVAETQLDDSLQDAVARHDLVVMPMAPGPTVQALHLIDLPVWAY
+VAPGHPWADRADVALEELVDVRVVAPSRSFMARRVLDGAVAVAGLTAPELSEANSGRVAQ
+ALVATGAGVAVVTEDPAFGLVPLRVLLDGRALSVGLHAAWRADHFAAATLARIAASLQDF
+VRTRYPQPGPADDIPVTTRASPLSAAPSQ
+>KBS0714_MOLHKGIG_01019
+----------------MEEKLLRAFVTVAEVGTVSGAAIRLDLVQSALSRQLQRLQRELR
+LPLFARVAGRLELTTAGEAFLPVAREVLVAHRRAEQAARALASGRLTDVAVAAPGTTLID
+VVLPFVATFGEEDPRPRVAETQLDDSLLDAVARHDLVVMPTVPPPSVASLPLMDLPVWAY
+VAPGHPWAGRTRVSLDDLVAQPVVAPARTFMARRVLDGAVAVAGLTPPALTEANSGRVAQ
+ALVAAGAGVAVVTEDPAFGLTPVRVIAQGRTLTVRLHAAWRGDHFAAETLEAIARRLQAF
+VRDRYAEPG--DDAPGRGRSA--------
+>KD337_NAFOICDF_01760
+MDSIAAGGRALDLDHLLDPALLRTFVAVVDEGTVTAAARELGLGQSALTRHLQRLQRDLG
+LALFAPEGARLRITPAGQAWLPVARSLLAAHAHARQAARILAAGRLTELSLGAPGTTLID
+VVIPFLTVLGEGDPAVRVTETQLDDSLQDSVARLDLVVLPSTPPDDVAALPLQSMPVWAC
+VAPGHPWADRDELDAAELAGARLVLPSRSFKARRVFDAALEVAGAAPRQVVEANSGRVAQ
+ALAANGTAVAVVTEDPAFGLRPLPIRAGGRRLEVHLHAVWRRDHFAAEEIAGVAAQLRVF
+VRRRYDVAEAQDDADGSLSRA----VSVD
+>SA211_MHAAABBN_00733
+----------------MDEKLLRAFVTVAEVGTVSGAAIRLDLVQSALSRQLQRLQRELR
+LPLFARVAGRFELTTAGEAFLPVAREVLVAHRRAEQAARALASGRLTDVAVAAPGTTLID
+VVLPFVATFGEEDPRPRVAETQLDDSLLDAVARHDLVVMPTVPPPSVASLPLMDLPVWAY
+VAPGHPWAGRTRVSLDDLVAQPVVAPARTFMARRVLDGAVAVAGLTPPALVEANSGRVAQ
+ALVATGAGVAVVTEDPAFGLTPVRVIAQGRTLAVRLHAAWREDHFAAETLQALARRLQAF
+VRDRYAEPG--DDAPR-------------
+>TT9_LFPAFLNI_00963
+----------------MEEKLLRAFVTVAEVGTVSGAAIRLDLVQSALSRQLQRLQRELR
+LPLFARVGGRLELTTAGEAFLPVAREVLVAHRRAEQAARTLASGRLTDVAVAAPGTTLID
+VVLPFVATFGEEDPRPRVAETQLDDSLLDAVARHDLVVMPTVPPPSVASLPLMDLPVWAY
+VAPGHPWAGRTRVSLDDLVAQPVVAPARTFMARRVLDGAVAVAGLTPPALVEANSGRVAQ
+ALVATGAGVAVVTEDPAFGLTPVRVIAQGRALAVRLHAAWREDHFATATLEKIARRLQAF
+VRDRYAEPG--DDAPR-------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001301.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001301.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4147cdf034d76752091dcc5449a405ed8fe1d839
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001301.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01869
+M-SSTPDLEQSRHLATALPGPRSQALAERQKAAVPAGVATTMPVYAARAAGGILEDVDGN
+RLIDLASGIAVTSVGASHPRVVAAVQEQVAQFTHTSFMITPYEGYVAVAEQLDRTAPISG
+QTRTALFNSGAEAVENAVKVARSYTGKQAVAAFDHAYHGRTTLTMALTAKNMPYKHHFGP
+FAPEVYRVPGSYPLRDGLSGAEAARRAIGALETQIGAENLAAVIMEPIQGEGGFIVPAEG
+FLPAVVEWCRANDVLFIADEVQSGVARTGSWFACEAEGVEPDLMTTAKGIAGGMPLSGVT
+GRAEVMDSVHPGGLGGTYGGNPVAAAAALAVFEAIEDEDLLAKATRIEEVIREHFAAHAD
+DRIAEVRGRGAMMAIELVEPGTGEPDAALTAAVAAAVRATGVILLTCGTYGNVIRFLPPL
+TIGEDLLKEGLSEVTKALQSA
+>KBS0714_MOLHKGIG_01018
+M-TATPDLEQTRHLATELPGPRSRELAERQKRAVPAGVATTMPVYAARAAGGILEDVDGN
+RLIDLASGIAVTSVGASHPRVVAAVQDQVAQFTHTSFMITPYEGYVAVAEQLDRTSPIPG
+ETRTALFNSGAEAVENAVKVARAYTGKQAVAAFDHAYHGRTTLTMALTAKSMPYKHSFGP
+FAPEIYRVPGSYPLRDGLSGAEAAQRAISALEKQIGADNLAAVIMEPIQGEGGFIVPAEG
+FLPAVVEWCKANDVLFIADEVQSGIARTGAWFASETEGIEPDLMATAKGIAGGMPLSGVT
+GRAEVMDSVHPGGLGGTYGGNPVATAAALAVFEAVEEDGLLEKARRIEQVIREHFEQNAD
+DRIAEVRGRGAMMAIEFVDPATGEPDATLTATVAAAVRATGVILLTCGTYGNVVRFLPPL
+TIGEDLLKEGLSEVTKALQSA
+>KD337_NAFOICDF_01761
+MTSPVTAPEQSRHIATELPGPKSRELAARQAGAVPAGVATTMPVFASRAGGGIIEDVDGN
+RLIDLGSGIAVTSVGASHPKVVEAVQEQVADFTHTCFMITPYEGYVAVAEKLGEKAPISG
+ETRTALFNSGSEAVENAVKVARAYTRKQAVVAFDHAYHGRTTLTMSLTAKSMPYKHSFGP
+FAPEVYRVAGSYPLRDGLNGAAAAKKAISAMEKQIGADNLAAVIMEPLQGEGGFIVPAEG
+FLQAIVEWCTANDVLFIADEVQSGFARTGAWSASELEGIEPDLMCTAKGIAGGMPLSAVT
+GRAEVMDAVHPGGLGGTYGGNPVATAASLAVFEAIEEDGLLQEAQMIERVIREHFEQNAD
+ERIAEVRGRGGMMAIEFVDPASGEPDAALTGKLAAAVRAAGVVLLTCGTYGNVVRFLPPL
+TIGEELLREGLAEVTTALQSA
+>SA211_MHAAABBN_00732
+M-TATPDLEQTRHLATELPGPRSRELAERQKRAVPAGVATTMPVYAARAAGGILEDVDGN
+RLIDLASGIAVTSVGASHPRVVAAVQEQVAQFTHTSFMITPYEGYVAVAEQLDRTSPIPG
+ETRTALFNSGAEAVENAVKVARAYTGKQAVAAFDHAYHGRTTLTMALTAKSMPYKHSFGP
+FAPEIYRVPGSYPLRDGLSGAEAAQRAISALEKQIGADNLAAVIMEPIQGEGGFIVPAEG
+FLPAVVEWCKANDVLFIADEVQSGIARTGAWFASETEGIEPDLMATAKGIAGGMPLSGVT
+GRAEVMDSVHPGGLGGTYGGNPVATAAALAVFEAVEEDGLLEKARRIEQVIREHFAQNAD
+DRIAEVRGRGAMMAIEFVDPATGEPDATLTATVAAAVRAAGVILLTCGTYGNVVRFLPPL
+TIGEDLLKEGLSEVTNALQSA
+>TT9_LFPAFLNI_00962
+M-TATPDLEQTRHLVTELPGPRSRELAERQKRAVPAGVATTMPVYAARAAGGILEDVDGN
+RLIDLASGIAVTSVGASHPRVVAAVQEQVAQFTHTSFMITPYEGYVAVAEQLDRTCPIPG
+ETRTALFNSGAEAVENAVKVARAYTGRQAVAAFDHAYHGRTTLTMALTAKSMPYKHSFGP
+FAPEIYRVPGSYPLRDGLSGAEAAQRAISALEKQIGADNLAAVIMEPIQGEGGFIVPAEG
+FLPAVVEWCKANDVLFIADEVQSGIARTGAWFASETEGIEPDLMATAKGIAGGMPLSGVT
+GRAEVMDSVHPGGLGGTYGGNPVATAAALAVFEAVEEDGLLEKARRIEQVIRDHFEQNAD
+DRIAEVRGRGAMMAIEFVDPATGEPDATLTATVAAAVRATGVILLTCGTYGNVVRFLPPL
+TIGEDLLKEGLSEVTKALQSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001303.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001303.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bba8f7fec3b783231b4bd6addff3635494b21868
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001303.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01874
+MTTAPATAGRERRTSDVVVIGAGPAGLMAARTAKAQGLSVTVLEARRRVGGRTWNGLVEGADGKDHFIEIGGQWISPDQT
+RLI--SLVEELGLPTFS-----RFRDGRNVYVDPRGERHVYDGLDFPVAEKTDREMDRL-IGNIDELTAEIDAAAP-WEH
+PRAAE--LDTISFRHWLEQESDDPEAIDNVSIYIASGMLTKPSHTFSMLQALLMAASAGSFRNLVDEDFILDQR--VEGG
+MQSVSLAMAAEL---GDDVVLGQPVRTLRWTEPDPSTADEKNGVAADVRNGVAHDGDAGDVVALTDDYEVHARYAVLAVP
+PNLYSRISFEP-----PMPREQQIAHQHISMGLVIKVHAVYETPFWREEGLSGTCFGGGRLVQEIYDNTNRGENLAGGAP
+GEEDPHGTLVGFVSDVYAEQMWALPEEERKAAILGAMAEYLGPRTLEPIAFFLSDMAAEEWTRGAYATSYDLGGLSRWGH
+LQNRPTGPIHYACSDIAAE-----GYQHVDGAIRMGEAAALAIAEREATDAGQPTG
+>KBS0714_MOLHKGIG_01014
+MTTAPATAGRERRTSDVVVIGAGPAGLMAARTAKAQGLSVTVLEARRRVGGRTWNGLVEGADGKDHFIEIGGQWISPDQT
+RLI--SLVEELGLPTFS-----RFRDGRNVYVDPRGERHVYDGLDFPVAEKTDREMDRL-IAKIDELTAEIDAAAP-WEH
+PRAAE--LDKISFRHWLEQQSDDPEAIDNVSIYIASGMLTKPSHTFSLLQALLMSASAGSFRNLVDEDFILDKR--VEGG
+MQSVSLAMAAEL---GDDVVLGQPVRTLRWAEPDPSTADEKNGVAADVRNGVAHDGAAGDVVALTDDYEVHARYAVLAVP
+PNLYSRISFEP-----PMPREQQIAHQHISMGLVIKVHAVYETPFWREEGLSGTCFGGGRLVQEIYDNTNRGENLAGGAP
+GKEDPHGTLVGFVSDVYAEQMWALPEEERKAAILGAMAEYLGPRTLEPIAFFLSDMAAEEWTRGAYATSYDLGGLSRWGH
+LQNRPTGPIHYACSDIAAE-----GYQHVDGAIRMGEAAALAIAEREATDAGQPTG
+>KD337_NAFOICDF_01230
+METP----------SDVIVVGAGLAGLVAARTLAEAGLSVRVLEREAEVGGRQRTRTVDG-----FVLDRGFQLVNPAYP
+ELPRHADVDALGLRPFGAGVRVRTRRGLALLADPRREPR--------LAARTLRDGVRHGLLDARELAALSRWAAPALAA
+PRVAKHRMDAPLIEAWDRAGVRGPLR-DAVLEPFLRGVLADPDLT-----------TSSRFTELLVRMFVLGTPGVPARG
+VAALPEQLAARVRAAGTRVTTGASVTAVRPA---------ADGVVVDVAGGAP----------------LHARAAVLAVG
+PEAFTGLLPEAATDRLPVP----------SRGLTTWWFRAPSAPA-RERFLAVDGTGSGPLVHTAV--------MTAAAP
+GLS-PDGTPLVEATALLDPSAPAVTDAQARA------------------------HAARIW--GVDASDWDLLARDDVPH
+ALPVQAAPLRLRAEARVAERVYAAGDHRDTASIQGALVSGRRVAERLLHELPR---
+>SA211_MHAAABBN_00728
+MTTAPATAGRERRTSDVVVIGAGPAGLMAARTAKAQGLSVTVLEARRRVGGRTWNGLVEGADGKDHFIEIGGQWISPDQT
+RLI--SLVEELGLPTFS-----RFRDGRNVYVDPRGERHVYDGLDFPVAEKTDREMDRL-IAKIDELTAEIDAAAP-WEH
+PRAAE--LDKISFRHWLEQQSDDPEAIDNVSIYIASGMLTKPSHTFSLLQALLMSASAGSFRNLVDEDFILDKR--VEGG
+MQSVSLAMAAEL---GDDVVLGQPVRTLRWAEPDPSTADEKNGVAADVRNGVAHDGAAGDVVALTDDYEVHARYAVLAVP
+PNLYSRISFEP-----PMPREQQIAHQHISMGLVIKVHAVYETPFWREEGLSGTCFGGGRLVQEIYDNTNRGENPAGGAP
+GEEDPHGTLVGFVSDVYAEQMWALPEEERKAAILGAMAEYLGPRTLEPIAFFLSDMAAEEWTRGAYATSYDLGGLSRWGH
+LQNRPTGPIHYACSDIAAE-----GYQHVDGAIRMGEAAALAIAEREATDAGQPTG
+>TT9_LFPAFLNI_00957
+MTTAPATAGRERRTSDVVVIGAGPAGLMAARTAKAQGLSVTVLEARRRVGGRTWNGLVEGADGKDHFIEIGGQWISPDQT
+RLI--SLVEELGLPTFS-----RFRDGRNVYVDPRGERHVYDGLDFPVAEKTDREMDRL-IAKIDELTAEIDAAAP-WEH
+PRAAE--LDKISFRHWLEQQSDDPEAIDNVSIYIASGMLTKPSHTFSLLQALLMSASAGSFRNLVDEDFILDKR--VEGG
+MQSVSLAMAAEL---GDDVVLGQPVRTLRWAEPDPSTADEKNGVAADVRNGVAHDGAAGDVVALTDDYEVHARYAVLAVP
+PNLYSRISFEP-----PMPREQQIAHQHISMGLVIKVHAVYETPFWREEGLSGTCFGGGRLVQEIYDNTNRGENLAGGAP
+GKEDPHGTLVGFVSDVYAEQMWALPEEERKAAILGAMAEYLGPRTLEPIAFFLSDMAAEEWTRGAYATSYDLGGLSRWGH
+LQNRPTGPIHYACSDIAAE-----GYQHVDGAIRMGEAAALAIAEREATDAGQPTG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001304.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001304.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5ee4ae3519ea3ceee52c937dc14780e2008ba63a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001304.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01882
+MRLILLRHGETDWNAGDRYQGRTDVELNAVGERQARRAAVGPVGDLLEEAAELVAVASPL
+ARARRTAEILLEARVGAADLALDEQLMELHGGDWEGLGLTAIAQRWPEEHRSWRAVPALD
+AGPVGGETLRAAGERALGALRGRVPQHWA-VYAAA-------------------------
+-------------------------------------------L
+>KBS0714_MOLHKGIG_01008
+MRLILLRHGETDWNVLDRYQGHTDIELNAEGERQARRAAGGPVGDLVEDAEELVAVCSPL
+ARARRTAEIVLEARVGAASVAVDPELMELAGGEWEGLELSAIAERWPDEHRLWRAEPALD
+AGPVGGETLRGGGERALRALRGHVPPHWADTPRDG---GAHTLLVVAHGALIRAATGLLL
+RHEGEAFAAMERIGNARAAVLQGAFTADTGAEGWGDWTLEGYGI
+>KD337_NAFOICDF_01809
+MRLVLLRHGETDWNALDRYQGRTDVPLNALGERQAAAAAAGPVGELLRSAEDLVAVSSPL
+IRARRTAEIVLEDAVGAVELAVDSRLVELGGGEWEGLDFTEIGARWPHEHHAWRTVPDLD
+GGPVGGEVLRAGGERVLAAAAAHVPEDWS-TPRPARVPDARTLLIVAHGAVIRAAAGLAL
+ALEGADFAHLARVSNARAVILDGTFA----GEGPGAWSLLGYDV
+>SA211_MHAAABBN_00722
+MRLILLRHGETDWNVLDRYQGHTDIELNAEGERQARRAAGGPVGDLVEDAEELVAVCSPL
+ARARRTAEIVLEARVGAASVAVDPELMELAGGEWEGLELSAIAERWPDEHRLWRAEPALD
+AGPVGGETLRGGGERALRALRGHVPPHWADTPRDG---GAHTLLVVAHGALIRAATGLLL
+RHEGEAFAAMERIGNARAAVLQGAFTADTGAEGWGDWTLEGYGI
+>TT9_LFPAFLNI_00951
+MRLILLRHGETDWNALDRYQGHTDIELNAEGERQARRAAGGPVGDLLEDAEELVAVCSPL
+ARARRTAEIVLQARVGAASVAVDPELMELAGGEWEGLELSAIAERWPDEHRLWRAVPALD
+AGPVGGETLRGGGERALRALRGHVPPHWADTPRDG---GAHTLLAVAHGALIRAATGLLL
+RHEGEAFAAMERIGNARAAVLQGAFAPAT--EGWGDWTLEGYGI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001305.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001305.fa
new file mode 100644
index 0000000000000000000000000000000000000000..58a5e9d0707dc2bfeccfa26e26dfb5b420572957
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001305.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01883
+MTVPQTTLDALTVAAAAAADKLGTHIVAFDVAERLGLTDAFLIASGASERQVNAIVDGVE
+EALLKEEQLKPLRREGRSDGHWVLLDYGHFVVHVQHREDREFYALDRLWKDTPAIDLGLA
+EEHTRPDAAGEGAADD--AAPHAS
+>KBS0714_MOLHKGIG_01007
+MTVPQTTLDALTTAAAAAADKLGTHIVAFDVAERLGLTDAFLIASGASERQVNAIVDGVE
+EALLKDEQLKPLRREGRSDGHWVLLDYGHFVVHVQHREDREFYALDRLWKDTPAIDLGLP
+EESTRPDAATQ---DDGASASHAS
+>KD337_NAFOICDF_01810
+MTVPQTTLDALQVAAAAAAEKVATHIVAVDVAERLGLTDAFLIASGASERQVNAIVDGIE
+EDLLVKEQLKPLRREGRSDGHWVLLDYGHFVVHVQHREDREFYALDRLWKDSPAIDLGLP
+EEATRPDDALDAAAQD--------
+>SA211_MHAAABBN_00721
+MTVPQTTLDALTTAAAAAADKLGTHIVAFDVAERLGLTDAFLIASGASERQVNAIVDGVE
+EALLKDEQLKPLRREGRSDGHWVLLDYGHFVVHVQHREDREFYALDRLWKDTPAIDLGLP
+EESTRPDAATQ---DDGASASHAS
+>TT9_LFPAFLNI_00950
+MTVPQTTLDALTTAAAAAADKLGTHIVAFDVAERLGLTDAFLIASGASERQVNAIVDGVE
+EALLKDEQLKPLRREGRSDGHWVLLDYGHFVVHVQHREDREFYALDRLWKDTPAIDLGLP
+EESTRPDAAAQ---DDDASASHAS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001311.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001311.fa
new file mode 100644
index 0000000000000000000000000000000000000000..10965aa96c996b13d17cbf9d33e7da6d6716a73f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001311.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01889
+MAHKKAGSSSKNGRDSNPQYLGVKRYGGEDVNAGEIIVRQRGTKFHPGRNVGRGKDDTLF
+ALSAGSVAFGQRRGRKVVDIVPAAE
+>KBS0714_MOLHKGIG_01001
+MAHKKAGSSSKNGRDSNPQYLGVKRYGGEDVNAGEIIVRQRGTKFHPGRNVGRGKDDTLF
+ALSAGSVAFGQRRGRKVVDIVPAAE
+>KD337_NAFOICDF_01817
+MAHKKAGSSSKNGRDSNPQYLGVKRFGGQDVNAGEILIRQRGTKFHPGRNVGRGKDDTLF
+ALSAGTVSFGQRRGRKVVDIVAAGE
+>SA211_MHAAABBN_00715
+MAHKKAGSSSKNGRDSNPQYLGVKRYGGEDVNAGEIIVRQRGTKFHPGRNVGRGKDDTLF
+ALSAGSVAFGQRRGRKVVDIVPAAE
+>TT9_LFPAFLNI_00944
+MAHKKAGSSSKNGRDSNPQYLGVKRYGGEDVNAGEIIVRQRGTKFHPGRNVGRGKDDTLF
+ALSAGSVAFGQRRGRKVVDIVPAAE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001314.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001314.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f5bdfa24494e17df9c4d5506d7db7352b44e1299
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001314.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01892
+--------MPSTPTADRVRPAQPAETPASDGTLSWYARPAGMAWTLLVTSLVALTATIVI
+IVERSILAADPGHRTSCDLNPWVSCGRVMQSWQAMTFGFPNTYIGIVAFSVLITVAVSLF
+AGARFARWYWLLMNVGILAGFAFCVWLWYSAVYSIGTLCLYCMIVWAMVIAQLVLVTSRN
+IQTGTLPASPGAARLARELAWPVILILYVLVFATILLELGFGVIGLD
+>KBS0714_MOLHKGIG_00998
+--------MPATPLTDDIRLSPADDIPAEEARLTWYARPAGTAALLLITSLVALTATIII
+IVERTLLTADPTHRTSCDLNPWVSCGQVMQSWQAHTFGFPNTYIGVVAFSVLITVGMSLL
+AGARFARWYWLLMNAGILAGFAFCVWLWYSAVYSIGTLCLYCMIVWAMVIAQLVLVTSRN
+LQTGTLPAPAGLVRLARELAWPVIVLLYVLVFASILLELGLGVVGID
+>KD337_NAFOICDF_01838
+MDVTETAENPPAP-----RAHHAAHALPEDRSLSWYARPLGTAWMLLITSIVAVTATIII
+IVERSILAENPNYRTSCDINPWLSCGTVMQSWQAHTFGFPNTFVGIVAFPVLITVAVSLF
+AGARFARWYWVLMNVGILAGFAFAAWLWYSAVYSIGTLCLYCMIVWAMVILQLVLVTSRN
+LQTGALPSSPGLARLAQDFAWPVIVLLYALVFASILLQLGLGVIGIR
+>SA211_MHAAABBN_00712
+--------MPATPLTDDIRLSPADDIPAEEARLTWYARPAGTAALLLITSLVALTATIII
+IVERTLLTADPTHRTSCDLNPWVSCGQVMQSWQAHTFGFPNTYIGVVAFSVLITVGMSLL
+AGARFARWYWLLMNAGILAGFAFCVWLWYSAVYSIGTLCLYCMIVWAMVIAQLVLVTSRN
+LQTGTLPAPAGLVRLARELAWPVIVLLYVLVFASILLELGLGVVGID
+>TT9_LFPAFLNI_00941
+MS------MPTTPPTDDVRLSPADDVPAEEARLTWYARPAGTAALLLITSLVALTATIVI
+IVERALLTADPTHRTSCDLNPWVSCGQVMQSWQAHTFGFPNTYIGVVAFSVLITVGMSLL
+AGARFARWYWLLMNAGILAGFAFCVWLWYSAVYSIGTLCLYCMIVWAMVIAQLVLVTSRN
+LQTGTLPAPAGLVRLARELAWPVIVLLYVLVFASILLELGLGVVGID
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001315.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001315.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f30dca2304943df98f8f00326eb7ceaeafe9185f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001315.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01893
+MAQHIEETLVLVKPDGVERNLVGEILARIERKGYVIADLKMLTPTRSMLERHYEEHQGKP
+FFDPLVDFMASGPVVAVRVTGNSVIEGFRSLAGKTDPTVAAPGTIRGDLGRDWGESVQKN
+LVHGSDSSLSAERELGIWFG
+>KBS0714_MOLHKGIG_00997
+MTHHTEETLVLIKPDGVARNLVGEILARIERKGYVIADLKMLTPTRAMLERHYEEHQGKP
+FFEPLVAFMASGPVVAARVTGDSVIEGFRSLAGKTDPTVAAPGTIRGDLGRDWGEAVQKN
+LVHGSDSTLSAERELAIWFG
+>KD337_NAFOICDF_01839
+MTHHPEETLVLVKPDGVERRLTGEIIARIERKGYEVVDLKMLVPTREMLAAHYEEHEGKP
+FYEPLLEFMGSGPVVALRLAGDRVIEGFRSLAGATDPTVAAPGTIRGDYARDWGAGVQKN
+LVHGSDSTLSAERELAIWFA
+>SA211_MHAAABBN_00711
+MTHHTEETLVLIKPDGVARNLVGEILARIERKGYVIADLKMLTPTRAMLERHYEEHQGKP
+FFEPLVAFMASGPVVAARVTGDSVIEGFRSLAGKTDPTVAAPGTIRGDLGRDWGEAVQKN
+LVHGSDSTLSAERELAIWFG
+>TT9_LFPAFLNI_00940
+MTHHTEETLVLIKPDGVARNLVGEILARIERKGYVIADLKMLTPTRAMLERHYEEHQGKP
+FFEPLVAFMASGPVVAARVTGDSVIEGFRSLAGKTDPTVAAPGTIRGDLGRDWGEAVQKN
+LVHGSDSTLSAERELAIWFG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001317.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001317.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1fb624ecf238eeefd29233d56527c7f94d2430cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001317.fa
@@ -0,0 +1,80 @@
+>AS2_ACLBLIBL_01895
+MYPLASSAPDGRTPASPRFPEIERRILAYWDEDGTFQASIDQRPALNEDGSQNEFVFYDGPPFANGLPHYGHLLTGYVKD
+LVARYQTQQGRRVERRFGWDTHGLPAELEAMKQLGMTDKSEIEAMGIDTFNDACRSSVLKYTDQWQDYVTRQARWVDFEN
+DYKTLTPDFMESVIWAFSELHRKGLTYRGFRVLPYCWNDETPLSNHELRMDDDVYKMRQDPSVTVTFPITGLPADPALVP
+DGGADAALAAHLAGVHVLAWTTTPWTLPTNAALAVGPQIQYAVVPAGPEGAT-ADGDRFLLAVDLVGAHATELGYADADA
+ARAAVTETIPGARLGGLAYEPLFTDVFDAHADETFTVNGRDLGVEGAHRILVDDYVSTEDGTGVVHQAPAYGEDDQRVCE
+ANGIPVLLSVDSGARFLPLFAREDVGRGDLREIAGVQVFEANRTIVRALRGLGRVAREASYEHSYPHCWRCRTPLIYRAV
+TSWYVKVTQVKERMLELNEEITWIPGNVKHGQFGTWVANARDWSISRNRYWGSPIPVWESDHPDYPLQEVYGSLAEIEEA
+FGRLPRNAEGEVDLHRPWVDDLTRPHPDPEAAAAGAVMRRVEDVLDVWFDSGSMPYAQVHYPFERADWFPTHNPADFIVE
+YIGQTRGWFYTMHILATALFDRPAFSNVISHGIVLGSDGQKMSKSLRNYPDVTEVLDRDGADAMRWFLMASPILRGGNLV
+VTEEGIREGVRQVLLPAWNAYHFFTLYANTAHDGGARPDGYRAQERHTAEDPLDQYILAATGRMLREVKTGLDAYEVSDA
+TDALRGFMDTLTNWYIRRSRQRFFDEDTAAMDVLYTALEAFARAAAPLMPLVAEEIWRGLTGGRSVHLTDYPDADLFPHG
+PEADSLVARMDAVRRISSAGSALRKGAGRRVRLPLPRLSVVVPDAEGLEGTYARIVADELNLKDVSLTELSDEAIARYGI
+GTELKLNFRELGKVYGKQVPLVKKAVDAGSYEETADGLAVTLADGATVTLDPALYELRTVSTGAPEGTAVGVLPGAAGFL
+VLDTEVSAELAAEGTARDVVRAVQAARKDAGLDVSDRVRTRIDGPAAVVAALEAHRDLVAEETLTVELELVDSGEADPRK
+DPADDAMKTVAVTVAKADA
+>KBS0714_MOLHKGIG_00994
+MYPLASSAPDGRTPASPRFPEIERRILAYWDEDGTFQASIDQRPTRNEDGSQNEFVFYDGPPFANGLPHYGHLLTGYVKD
+LVARYQTQQGRRVERRFGWDTHGLPAELEAMKQLGMTDKSEIEAMGIDTFNDACRSSVLKYTDQWQDYVTRQARWVDFEN
+DYKTLTPDFMESVIWAFSELHRKGLTYRGFRVLPYCWNDETPLSNHELRMDDDVYKMRQDPSVTVTFPITGLPADPALVP
+DGGADAALAAHLAGVHVLAWTTTPWTLPTNAALAVGPQIQYAVVPAGPEGAT-ADGDRFLLAVDLVGAHARELGYADADA
+ARAAVTETIPGARLGGLAYAPLFTDVFDAHRGETFTVNGRDLGVEGAHRILVDDYVSTEDGTGVVHQAPAYGEDDQRVCE
+ANGIPVMLSVDSGARFLPLFAREDVGRGDLREIAGVQVFEANRTIIRALRALGRVAREASYEHSYPHCWRCRTPLIYRAV
+TSWYVKVTQIKERMLELNEEITWIPGNVKHGQFGTWVANARDWSISRNRYWGSPIPVWESDHPDFPRQEVYGSLAEIEEA
+FGRLPRNAEGEVDLHRPWVDDLTRPHPDPEAAAAGAVMRRVEDVLDVWFDSGSMPYAQVHYPFERADWFPTHNPADFIVE
+YIGQTRGWFYTMHILATALFDRPAFSHVISHGIVLGSDGQKMSKSLRNYPDVTEVLDRDGADAMRWFLMASPILRGGNLI
+VTEEGIREGVRQVLLPAWNAYHFFTLYANTAHDGGARPEGYRAQERHTAEDPLDQYILAAAGRMLREVKAGLDAYEVSDA
+TDALRGFMDTLTNWYIRRSRERFFDEDTVAFDVLYTVLEAFTRAAAPLMPLIAEEIWRGLTGGRSVHLTDYPDADLFPHG
+PEADSLVARMDAVRRISSAGSALRKGAGRRVRLPLPRLSVVVPDAAGLEGTYARIVADELNLKDVELTELSEEAIARYGI
+GTELKLNFRELGKAFGRQVPLVKQAVDAGAYEETAEGLAVTLADGETVTLAPALYELRTVSTGAPEGTAVGVLPGTAGFL
+VLDTEVSAELAAEGTARDVVRAVQAARKDAGLDVSDRVRTRIEGPTAVVAALEAHRGLVAEETLTVDLELVDSGAADPRK
+DPADDAMKTVAVSVAKADA
+>KD337_NAFOICDF_01842
+MYPLASTDPAGATPASPLLPEIEQRILRYWDEDGTFQASIDARPAVNEDGSQNEFVFYDGPPFANGLPHYGHLLTGYVKD
+LVARYQTQQGRRVERRFGWDTHGLPAELEAMKQLGMTDKSEIEAMGIDRFNDACRSSVLKYTEEWRRYVTRQARWVDFDN
+DYKTLTPDFMESVIWAFSELHRKGLTYRGFRVLPYCWHDETPLSNHELRMDDDVYKMRQDPSVTVSFPILGLPDDAALVP
+AGGADAALADELAGVHVLAWTTTPWTLPTNAALAVGPEIEYAVVPAGPEGATVAAAERFLLAVDLVGAHAKELGYADADA
+ARAAVERTVLGARLGGLRYEPLFTDVFEAHAGETFPVGARTLTLDGVHRILVDDYVSTDDGTGVVHQAPAYGEDDQRVCE
+ANGIPVLLSVDEGARFLPLFAREGQGRGDLKDIAGVQVFEANRTIIRALRALGRIAREASYEHSYPHCWRCRTPLIYRAI
+TSWYVSVTKVKDRMLELNEDITWIPGNVKHGQFGTWVANARDWSISRNRYWGSPIPVWESDHPDYPLQEVYGSLAELEEA
+FGRLPRNADGEVDLHRPWIDDLTRPHPDPEAAAAGATMRRVEDVLDVWFDSGSMPYAQVHYPFERADWFPTHNPADFIVE
+YIGQTRGWFYTMHILATALFDRPAFSHVISHGIVLGSDGQKMSKSLRNYPDVTEVLDRDGSDAMRWFLMASPILRGGNLI
+VTEEGIREATRQVILPLWNAWHFFTLYANTAHDGGARPEGYRASERHTAEDPLDQYVLAACGTMLRQVKAALDAYEVSDA
+ADALRAFMDTLTNWYIRRSRERFFAEDTAAMDVLSTVLEAFTRAAAPLLPLVAEEIWRGLTGGRSVHLTDYPDADLFPHG
+PEADALVARMDLVRSITSAGSALRKGAKRRVRLPLAAMSVVVPDAAALEGTFTRIVADELNLKEVRLTELSEEAISRYGI
+GTELKLNFRELGKHFGRQVPLIKKAVDAGAYAEGEQGLDVTLADGAVVTLAPELYELRTVSTGAPEGTAVGVLPG-GGFL
+VLETAVSAELAAEGVARDVIRAVQAARKDAGLDVADRVRTRIEGPAPVVAALESHRDLVAQETLTVELDLVDSGAADPRR
+DPADDAMKTVAVAVAKAQA
+>SA211_MHAAABBN_00708
+MYPLASSAPDGRTPASPRFPEIERRILAYWDEDGTFQASIDQRPAFNEDGSQNEFVFYDGPPFANGLPHYGHLLTGYVKD
+LVARYQTQQGRRVERRFGWDTHGLPAELEAMKQLGMTDKSEIEAMGIDKFNDACRSSVLKYTDQWQDYVTRQARWVDFEN
+DYKTLTPDFMESVIWAFSELHRKGLTYRGFRVLPYCWNDETPLSNHELRMDDDVYKMRQDPSVTVTFPITGLPADPALVP
+DGGADAALAAHLAGVHVLAWTTTPWTLPTNAALAVGPQIQYAVVPAGPEGAT-ADGDRFLLAVDLVGAHARELGYADADA
+ARAAVTETIPGARLGGLAYAPLFTDVFDAHRGETFTVNGRDLGVEGAHRILVDDYVSTEDGTGVVHQAPAYGEDDQRVCE
+ANGIPVLLSVDSGARFLPLFAREDVGRGDLREIAGVQVFEANRTIIRALRALGRVAREASYEHSYPHCWRCRTPLIYRAV
+TSWYVKVTQIKERMLELNEEITWIPGNVKHGQFGTWVANARDWSISRNRYWGSPIPVWESDHPDFPRQEVYGSLAEIEEA
+FGRLPRNAQGEVDLHRPWVDDLTRPHPDPEAAAAGAVMRRVEDVLDVWFDSGSMPYAQVHYPFERADWFPTHNPADFIVE
+YIGQTRGWFYTMHILATALFDRPAFSHVISHGIVLGSDGQKMSKSLRNYPDVTEVLDRDGADAMRWFLMASPILRGGNLI
+VTEEGIREGVRQVLLPAWNAYHFFTLYANTAHDGGARPEGYRAQERHTAEDPLDQYILAATGRMLREVKTGLDAYEVSDA
+TDALRGFMDTLTNWYIRRSRERFFDEDTVAFDVLYTVLEAFTRAAAPLMPLIAEEIWRGLTGGRSVHLTDYPDADLFPHG
+PEADSLVARMDAVRRISSAGSALRKGAGRRVRLPLPRLSVVVPDAAGLEGTYARIVADELNLKDVELTELSEEAIARYGI
+GTELKLNFRELGKAFGRQVPLVKQAVDAGAYEETAEGLAVTLADGETVTLAPALYELRTVSTGAPEGTTVGVLPGTAGFL
+VLDTEVSAELAAEGTARDVVRAVQAARKDAGLDVSDRVRTRIEGPTAVVAALEAHRGLVAEETLTVDLELVDSGAADPRK
+DPADDAMKTVAVTVAKADA
+>TT9_LFPAFLNI_00937
+MYPLASSAPDGRTPASPRFPEIERRILAYWDEDGTFQASIDQRPTRNEDGSQNEFVFYDGPPFANGLPHYGHLLTGYVKD
+LVARYQTQQGRRVERRFGWDTHGLPAELEAMKQLGMTDKSEIEAMGIDTFNDACRSSVLKYTDQWQDYVTRQARWVDFEN
+DYKTLTPDFMESVIWAFSELHRKGLTYRGFRVLPYCWNDETPLSNHELRMDDDVYKMRQDPSVTVTFPITGLPADPALVP
+DGGADAALAAHLAGVHVLAWTTTPWTLPTNAALAVGPQIQYAVVPAGPEGAT-ADGDRFLLAVDLVGAHARELGYADADA
+ARAAVTETIPGARLGGLAYAPLFTDVFDAHRGETFTVNGRDLGVEGAHRILVDDYVSTEDGTGVVHQAPAYGEDDQRVCE
+ANGIPVLLSVDSGARFLPLFAREDVGRGDLREIAGVQVFEANRTIIRALRALGRVAREASYEHSYPHCWRCRTPLIYRAV
+TSWYVKVTQIKERMLELNEEITWIPGNVKHGQFGTWVANARDWSISRNRYWGSPIPVWESDHPDFPRQEVYGSLAEIEEA
+FGRLPRNAQGEVDLHRPWVDDLTRPHPDPEAAAAGAVMRRVEDVLDVWFDSGSMPYAQVHYPFERADWFPTHNPADFIVE
+YIGQTRGWFYTMHILATALFDRPAFSHVISHGIVLGSDGQKMSKSLRNYPDVTEVLDRDGADAMRWFLMASPILRGGNLI
+VTEEGIREGVRQVLLPAWNAYHFFTLYANTAHDGGARPDGYRAQERHTAEDPLDQYILAATGRMLREVKTGLDAYEVSDA
+TDALRGFMDTLTNWYIRRSRERFFDEDTVAFDVLYTVLEAFTRAAAPLMPLIAEEIWRGLTGGRSVHLTDYPDADLFPHG
+PEADSLVARMDAVRRISSAGSALRKGAGRRVRLPLPGLSVVVPDAAGLEGTYARIVADELNLKDVELTELSEEAIARYGI
+GTELKLNFRELGKAFGRQVPLVKQAVDAGAYEETAEGLAVTLADGETVTLAPALYELRTVSTGAPEGTTVGVLPGTAGFL
+VLDTQVTAELAAEGTARDVVRAVQAARKDAGLDVSDRVRTRIEGPTAVVAALEAHRGLVAEETLTVDLELVDSGAADPRK
+DPADDAMKTVAVTVAKADA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001318.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001318.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c53f08bf73361ed8fc9f7381425a03257e2d215d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001318.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_01898
+MTASDLYPTSLRLLGRPVLMVGGGRVAGRRVGALLDAGALVTVVAPEPGEEVERLAAAGL
+LTLHRRPYRPSDLDGVWFAQTATGDRAVDGAVASDAEARRVWCVDASDAESSAAWTPAVV
+RAGDVTVAVNAGGDPRRARALKDAITLALSTGRLPLRRRRASSEPGRVALVGGGPGDSGL
+ITVRGRQLLAEADVVVADRLGPRALLAELDPAVPVIEVGKAPGNHLATQDEINAVLVREA
+RAGRLVVRLKGGDPYVLGRGGEEAAHCRAHGVDVEVVPGVTSAVSVPAAAGIPVTHRGVA
+TGFTLVTGHEELSEVPTRADHTLVLLMGVRRLADTARRLTERGLDGATPVAIIERGWMPD
+QRVTVGTVETIAAQAAAVGVENPAVIVVGDVVRLSPYATGARAAGVPAPILTLNPTSEGA
+RA
+>KBS0714_MOLHKGIG_00991
+MTASDLYPTSLRLLGRPVLIVGGGRVAGRRVGALLDAGALVSVVAPEPGEEVERLAAAGL
+LTLHRRPYRPSDLDGVWFAQTATGDRAVDGAVASDAEARRVWCVDASDAESSAAWTPAVV
+RAGDVTVAVNAGGDPRRARALKDAIALALSTGRLPLRRRRASSEPGRVALVGGGPGDSGL
+ITVRGRQLLAEADVVVADRLGPRALLAELDPAVPVIEVGKAPGNHLATQDEINAVLVREA
+RAGRLVVRLKGGDPYVLGRGGEEAAHCRAHGVDVEVVPGVTSAVSVPAAAGIPVTHRGVA
+TGFTLVTGHEELAEVPTRADHTLVLLMGVRRLADTARRLTERGLDGATPVAIIERGWMPD
+QRVTVGTVETIAAQAAAVGVENPAVIVVGDVVRLSPYATGAPAAGIPAPISTLNPTSEGA
+RA
+>KD337_NAFOICDF_01845
+MTASDLYPTSLCLLGRPVLIVGGGRVAGRRVGALLDAGALVTVVAPEPGEEVERLAAAGL
+LTLHRRPYRPSDLDGVWFAQTATGDRAVDGAVASDAEARRVWCVDASDAESSAAWTPAVA
+RAGDVTVAVNAGGDPRRARALKDAITLALSTGRLPLRRRRASSEPGRVALVGGGPGDSGL
+ITVRGRQLLAEADVVVADRLGPRALLAELDPAVPVIEVGKAPGNHLATQDEINAVLVREA
+RAGRLVVRLKGGDPYVLGRGGEEAAHCRAHGVDVEVVPGVTSAVSVPAAAGIPVTHRGVA
+TGFTLVTGHEELAEVPTRADHTLVLLMGVRRLADTARRLTERGLDGATPVAIIERGWMPD
+QRVTVGTVETIAAQAAAVGVENPAVIVVGDVVRLSPYATGAPAAGVPAPISTLNPTSEGA
+RA
+>SA211_MHAAABBN_00705
+MTASDLYPTSLRLLGRPVLMVGGGRVAGRRMGALLDAGALVTVVAPEPGEEVERLAAAGL
+LTLHRRPYRPSDLDGVWFAQTATGDRAVDGAVASDAEARRVWCVDASDAESSAAWTPAVV
+RAGDVTVAVNAGGDPRRARALKDAITLALSTGRLPLRRRRASSEPGRVALVGGGPGDSGL
+ITVRGRQLLAEADVVVADRLGPRALLAELDPAVPVIEVGKAPGNHLATQDEINAVLVREA
+RAGRLVVRLKGGDPYVLGRGGEEAAHCRAHGVDVEVVPGVTSAVSVPAAAGIPVTHRGVA
+TGFTLVTGHEELSEVPTRADHTLVLLMGVRRLADTARRLTERGLDGATPVAIIERGWMPD
+QRVTVGTVETIAAQAAAVGVENPAVIVVGDVVRLSPYATGAPAAGVPAPISTLNSTSEGA
+RA
+>TT9_LFPAFLNI_00934
+MTTSDLYPTSLRLLGRPVLVVGGGRVAGRRMGALLDAGALVTVVAPKPGEEVERLAAAGL
+LTLHRRPYRPSDLDGVWFAQTATGDRAVDGAVASDAEARRVWCVDASDAESSAAWTPAVV
+RAGDVTVAVNAGGDPRRARALKDAITLALSTGRLPLRRRRASSEPGRVALVGGGPGDSGL
+ITVRGRQLLAEADVVVADRLGPRALLAELDPAVPVIEVGKAPGNHLATQDEINAVLVREA
+RAGRLVVRLKGGDPYVLGRGGEEAAHCRAHGVDVEVVPGVTSVVSVPAAAGIPVTHRGVA
+TGFTLVTGHEELSEVPTRADHTLVLLMGVRRLADTARRLTERGLDGATPVAIIERGWMPD
+QRVTVGTVETIAAQAAAVGVENPAVIVVGDVVRLSPYATGAPAAGIPAPILTLNPTSEGA
+RA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001319.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001319.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e7e328305581af72187828d74e40e064216aed34
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001319.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01899
+MRTDTPTLDAPGRAPGAAADDELRELDSGLDALQAVDSARRTGLAGWDWSRVLLPVAAVV
+LLVAIWQVAAWLAGARGEPITGPGDVLGAFGALWAQGLVQQAVATSVGRAVVGFALAVVA
+GVGLGLLLAQVGVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVILTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGAPMGVGLGTLLHQGRTESDLAVVLCAVLAILAVGVLVELTAFGPVERRMLRRQG
+LLEGSTR
+>KBS0714_MOLHKGIG_00990
+MRTDTPTLDAPGRAPGAATDDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQAFAWLAGARGEPITGPGDVVGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLLLGQVSVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHEGRAESDLAVVLCAVLAILAVGVLVELTAFGPAERRMLRRRG
+LLEGSTR
+>KD337_NAFOICDF_01846
+MRTDTPTLDAPGRAPGAAADDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQVAAWLAAARGEPITGPGDVLRAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLLLGQVSVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHQGRAESDLAVVLCAVLAILAVGVLVELTAFGPVERRMLRRQG
+LLEGSTR
+>SA211_MHAAABBN_00704
+MRTDTPTLDAPGRAPGAATDDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQAFAWLAGARGEPITGPGDVVGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLVLGQVGVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHEGRAASDLAVVLCAVLTILAVGVLVELAAFGPVERRMLRRRG
+LLEGSTR
+>TT9_LFPAFLNI_00933
+MRTDTPTLDAPGRAPGAATDDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV
+LLVAIWQAFAWLAGARGEPITGPGDVLGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV
+GVGLGLVLGQVSVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV
+VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA
+EIIAVGGPMGVGLGTLLHEGRAASDLAVVLCAVLTILAVGVLVELAAFGPVERRMLRRRG
+LLEGSTR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001323.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001323.fa
new file mode 100644
index 0000000000000000000000000000000000000000..70e3e3fb8760efaefaf4cdf521737981f7cd6087
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001323.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01903
+MSTVPPTRPTEELERLQALAESGAAELGWDAPAAAVVDWAARHVDLRRAAVACSMADAVL
+PHLVAQRMPGVDVLFLETGYHFTETLATRDEVARRLDVTVVDVLPELTVAEQDERHGKDL
+FARDPGLCCAMRKVEPLNRALAGYDLWFTGVRRDEAPTRTNTPLVGWDEAHGMVKVNPVA
+PWSFDDLVGYATDHDVPVNLLLQNGYPSIGCRPCTRPVAPGEDPRAGRWTGTAKTECGIH
+V
+>KBS0714_MOLHKGIG_00986
+MSTVPPTRPTEDLERLQALAESGAAELGWDAPAEAVVDWAARHVDLRRAAVACSMADAVL
+PHLVAQRMPGVDVLFLDTGYHFTETLATRDEVARRLAVTVVDVLPELTVAEQDERHGKDL
+FARDPGLCCAMRKVEPLNRALAGYDLWFTGVRRDEAPTRTNTPLVGWDEAHGMVKVNPVA
+PWSFDDLVGYATDHDVPVNLLLQNGYPSIGCRPCTRPVAPGEDPRAGRWAGTAKTECGIH
+V
+>KD337_NAFOICDF_01850
+MSTVPPTRPTEDLERLQALAESGAAELGWDAPAEAVVDWAARHVDLRRAAVACSMADAVL
+PHLVAQRMPGVDVLFLETGYHFTETLATRDEVARRLDVTVVDVLPELTVAEQDERHGKDL
+FARDPGLCCAMRKVEPLNRALAGYDLWFTGVRRDEAPTRTNTPLVGWDEAHGMVKVNPVA
+PWSFDDLVGYATDHDVPVNLLLQNGYPSIGCRPCTRPVAPGEDPRAGRWAGTAKTECGIH
+V
+>SA211_MHAAABBN_00700
+MSTVPPTRPTEDLERLQALAESGAAELGWDAPAEAVVDWAARHVDLRRAAVACSMADAVL
+PHLVAQRMPGVDVLFLETGYHFTETLATRDEVARRLDVTVVDVLPELTVAEQDERHGKDL
+FARDPGLCCAMRKVEPLNRALAGYDLWFTGVRRDEAPTRTNTPLVGWDEAHGMVKVNPVA
+PWSLDDLVGYATDHDVPVNLLLQNGYPSIGCRPCTRPVAPGEDPRAGRWAGTAKTECGIH
+V
+>TT9_LFPAFLNI_00929
+MSTVPPTRPTEDLERLQALAESGAAELGWDAPAEAVVDWAARHVDLRRAAVACSMADAVL
+PHLVAQRMPGVDVLFLDTGYHFTETLATRDEVARRLAVTVVDVLPELTVAEQDERHGKDL
+FARDPGLCCAMRKVEPLNRALAGYDLWFTGVRRDEAPTRTNTPLVGWDEAHSMVKVNPVA
+PWSFDDLVGYATDHDVPVNLLLQNGYPSIGCRPCTRPVAPGEDPRAGRWAGTAKTECGIH
+V
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001326.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001326.fa
new file mode 100644
index 0000000000000000000000000000000000000000..02085037161dd0e05c1c62acf5771bd29eb5f43c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001326.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01906
+MDVSHTTENQSPRAAVVTGATTGIGRATALELARRGWRVYAVGRRAERLDALAAQAREEA
+VPGEVVPAPLDVTDEAAVAGLVARVDTDGGIDTLVNIAGGARGTDFVGAGNREDWEWMYR
+ANVLGTLAMCQAFLPGLRAHGEGTVLNLTSTAAVTAYEGGAGYNAAKMGQHGLTAALRLE
+EAEHNVRVIEVLPGMVHTEEFSLMRLGGDAAAAEKVYAGVEKPLTAEDVAEVCVHAVELP
+HHVNLDQIVIRPVAQAAQHKVIRR
+>KBS0714_MOLHKGIG_00983
+MSHTHEPAKNPARAAVVTGATSGIGRATALELARRGWRVYAVGRRAERLETLAADARAEG
+VSGDVVPAALDVTDEAAVAALASRVEADGGADTLVNIAGGALGTDAVGDGDRADWEWMYR
+VNVLGTLTMCQAFLPMLRAHGEGTVLNLTSTAAVTAYEGGAGYNAAKMGQHGLTGALRLE
+EAEHNVRVIEVLPGMVHTEEFSRNRLGGDQSAADAVYAGVEKPLTAEDVAEVCVHAVELP
+HHVNLDQIVMRPVAQAAQHKVIRR
+>KD337_NAFOICDF_01853
+MSHTHEPAKNPARAAVVTGATSGIGRATALELARRGWRVYAVGRRAERLETLAADARAEG
+VSGDVVPAPLDVTDEAAVAALASRVEADGGADTLVNIAGGALGTDAVGDGDRADWEWMYR
+VNVLGTLTMCQAFLPMLRTHGEGTVLNLTSTAAVTAYEGGAGYNAAKMGQHGLTGALRLE
+EAEHNVRVIEVLPGMVHTEEFSRNRLGGDQSAADAVYAGVEKPLTAEDVAEVCVHAVELP
+HHVNLDQIVMRPVAQAAQHKVIRR
+>SA211_MHAAABBN_00697
+MSHTHEPAKNPARAAVVTGATSGIGRATALELARRGWRVYAVGRRAERLETLAADARAEG
+VSGDVVPAALDVTDEAAVAALASRVEADGGADTLVNIAGGALGTDAVGVGDRADWEWMYR
+VNVLGTLTMCQAFLPMLRAHGEGTVLNLTSTAAVTAYEGGAGYNAAKMGQHGLTGALRLE
+EAEHNVRVIEVLPGMVHTEEFSRNRLGGDQSAADAVYAGVEKPLTAEDVAEVCVHAVELP
+HHVNLDQIVMRPVAQAAQHKVIRR
+>TT9_LFPAFLNI_00926
+MSHTHEPAKNPARAAVVTGATSGIGRATALELARRGWRVYAVGRRAERLETLAADARAEG
+VSGDVVPAALDVTDEAAVAALASRVEADGGADTLVNIAGGALGTDAVGDGDRADWEWMYR
+VNVLGTLTMCQAFLPMLRAHGEGTVLNLTSTAAVTAYEGGAGYNAAKMGQHGLTGALRLE
+EAEHNVRVIEVLPGMVHTEEFSRNRLGGDQSAADAVYAGVEKPLTAEDVAEVCVHAVELP
+HHVNLDQIVMRPVAQAAQHKVIRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001327.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001327.fa
new file mode 100644
index 0000000000000000000000000000000000000000..06c2a99ec09b244c2d1444e17a56a9624a505ddf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001327.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_01907
+MAENTQGTDTPIDASTASTPAAGAVAVPDKPGLEGLEEKLTARWAQEGTYAFDPRTTREQVYSIDTPPPTASGSLHVGHV
+FSYTQTDVLARYQRMTGKNVFYPMGWDDNGLPTERRVQNYYGVRCDPTKPYIEGYTPPAQPAKNQRDWDVVSRKNFIELC
+EELAVEDEKVFEDLFTRLGLSVDWSMTYRTIDDVSRAVSQRAFLRNVAAGDAYLSEAPTMWDVTFRTAVAQAELEDREVP
+GAYHRYPFTAADGTQVFIETTRPELLASCSALVAHPEDERYQPLFGTMVRSPLFDVEVEVKAHELAKPDKGSGIAMVCTF
+GDLTDVTWWRELQLPTRTLIGRDGRFAAETPEWISSEAGRAFYAESIAGKTVFSAKEAVVTALTEAGLMDGEPKKVQHAV
+NFYEKGDKPLEIVTSRQWYIRNGGRDADRREQLIARGRELDWHPEHMRHRYENWVEGLNGDWLVSRQRFFGVPIPVWYRL
+DAEGEPVYDEPIVPEDAALPVDPVAETAPGFTEDQRDQPGGFTGDPDVLDTWATSSLTPQIVGRWSRDEEFFANVFPFDL
+RPQGHDIIRTWLFSTVVRADALNGSVPWTDTALSGWILDPDRKKMSKSKGNVVVPTDILEEFGSDAVRYWASSARLGADT
+AYEVAQMKIGRRLAIKLLNAAKFVLNLGATRDAVVRTPDDAARVTNALDASLLARLATTVEQATAAFDAYDYARALNVTE
+SFFWQFTDDYVELIKDRAYGGHGEAEQASVVAALATTLDSLLRLLAPFQPFATEEVWSWWRTGSVHRAPWPGLESEAAGL
+RAAAEGGDPQVLAVVAQVLGRVRKAKSEAKVKQRTQVRTATVRAAAAQLDALRGGLADLKGAGNVADVTLTEAD----GE
+LEVTDIELAPAEEA
+>KBS0714_MOLHKGIG_00982
+MAENTQGTDTPIDASTPSTPAAGAVAVPDKPALEGLEEKLTARWADERTYAFDTQTTREQVYSIDTPPPTASGSLHVGHV
+FSYTQTDVLARYQRMNGKNVFYPMGWDDNGLPTERRVQNYYGVRCDPAKPYVEGYRPPEKPAKNQRDWDVISRKNFIELC
+EELAVEDEKVFEDLFTRLGLSVDWDMTYRTIDDVSRAVSQRAFLAGIASGDAYLAEAPTMWDVTFRTAVAQAELEDREVP
+GAYHRYAFTAADGEQVFIETTRPELLASCSGLVAHPDDERYQHLFGTTVTSPLYGVEVEVFPHPLAKPDKGSGIAMVCTF
+GDLNDVTWWRELQLPTRTLIGRDGRFAADTPEWITTDAGRQAYADTVAGKTVFSAKQGVVDALTAAGLLDGEPKKIMHAV
+NFYEKGDKPLEVVTSRQWYIRNGGRDADRRAELIERGRELSWHPEHMRHRYENWVEGLNGDWLVSRQRFFGVPIPVWYPL
+DAEGEPDYENPILPADEQLPVDPAAEAAPGYSEDQRDVPGGFTGDPDVLDTWATSSLTPQIVGRWSRDEAFFNNVFPFDL
+RPQGHDIIRTWLFSTVVRAHALNGSVPWTDTALSGWILDPDRKKMSKSKGNVVVPTDILDQFGSDAVRYWAASARLGADT
+AYEVAQMKIGRRLAIKLLNAAKFVLNLGATQDAVIRTADDAAAVTNPLDASLLTRLAATVEQATRAFEAYDYARALNVTE
+QFFWAFTDDYVELVKDRAYGGHGEAEQASVVTTLATTLDALLRLLAPFQPFATEEVWSWWRAGSVHTAAWPGAADEVASL
+SFAASAGDAEVLPTVAQVLGGIRKAKSEAKVKQRTEVRSAVVTGPADWLEKLRGGLADLKAAGNIADLSLTQGEAGESAP
+LTVSDVQLAPVDDD
+>KD337_NAFOICDF_01854
+MAENTQGTDTPIDASTPSTPAAGAVAVPDKPALEGLEEKLTARWADERTYAFDTQTTREQVYSIDTPPPTASGSLHVGHV
+FSYTQTDVLARYQRMNGKNVFYPMGWDDNGLPTERRVQNYYGVRCDPAKPYVEGYRPPEKPAKNQRDWDVISRKNFIELC
+EELAVEDEKVFEDLFTRLGLSVDWDMTYRTIDDVSRAVSQRAFLAGIASGDAYLAEAPTMWDVTFRTAVAQAELEDREVP
+GAYHRYAFTAADGEQVFIETTRPELLASCSGLVAHPDDERYQHLFGTTVTSPLYGVEVEVFPHPLAKPDKGSGIAMVCTF
+GDLNDVTWWRELQLPTRTLIGRDGRFAADTPEWITTDAGRQAYADTVAGKTVFSAKQGVVDALTAAGLLDGEPKKIMHAV
+NFYEKGDKPLEVVTSRQWYIRNGGRDADRRAELIERGRELSWHPEHMRHRYENWVEGLNGDWLVSRQRFFGVPIPVWYPL
+DAEGEPDYENPILPADEQLPVDPAAEAAPGYSEDQRDVPGGFTGDPDVLDTWATSSLTPQIVGRWSRDDAFFSSVFPFDL
+RPQGHDIIRTWLFSTVVRAHALNGSVPWTDTALSGWILDPDRKKMSKSKGNVVVPTDILDQFGSDAVRYWAASARLGADT
+AYEVAQMKIGRRLAIKLLNAAKFVLNLGATQDAVIRTADDAAAVTNPLDASLLARLAVSVEQATRAFEAYDYARALNVTE
+QFFWAFTDDYVELVKDRAYGGHGEAEQASVVTTLATTLDALLRLLAPFQPFATEEVWSWWRAGSVHTAAWPGAADEVASL
+SFAASSGDAEVLPTVAQVLGGVRKAKSEAKVKQRTEVRSAVVTGPAEWLEKLRGGLADLKAAGNIADLSLTQGEAGEAAP
+LTVSDVQLAPVEDD
+>SA211_MHAAABBN_00696
+MAENTQGTDTPIDASTPSTPAAGAVAVPDKPALEGLEEKLTARWADERTYAFDTQTTREQVYSIDTPPPTASGSLHVGHV
+FSYTQTDVLARYQRMNGKNVFYPMGWDDNGLPTERRVQNYYGVRCDPAKPYVEGYRPPEKPAKNQRDWDVISRKNFIELC
+EELAVEDEKVFEDLFTRLGLSVDWDMTYRTIDDVSRAVSQRAFLAGIASGDAYLAEAPTMWDVTFRTAVAQAELEDREVP
+GAYHRYAFTAADGEQVFIETTRPELLASCSGLVAHPDDERYQHLFGTTVTSPLYGVEVEVFPHPLAKPDKGSGIAMVCTF
+GDLNDVTWWRELQLPTRTLIGRDGRFAADTPEWITTDAGRQAYADTVAGKTVFSAKQGVVDALTAAGLLDGEPKKIMHAV
+NFYEKGDKPLEVVTSRQWYIRNGGRDADRRAELIERGRELSWHPEHMRHRYENWVEGLNGDWLVSRQRFFGVPIPVWYPL
+DAEGEPDYENPILPADEQLPVDPAAEAAPGYSEDQRDVPGGFTGDPDVLDTWATSSLTPQIVGRWSRDEAFFNNVFPFDL
+RPQGHDIIRTWLFSTVVRAHALNGSVPWTDTALSGWILDPDRKKMSKSKGNVVVPTDILDQFGSDAVRYWAASARLGADT
+AYEVAQMKIGRRLAIKLLNAAKFVLNLGATQDAVIRTADDAAAVTNPLDASLLTRLAATVEQATRAFEAYDYARALNVTE
+QFFWAFTDDYVELVKDRAYGGHGEAEQASVVTTLATTLDALLRLLAPFQPFATEEVWSWWRAGSVHTAAWPGAADEVAAL
+SFAASAGDAEVLPTVAQVLGGVRKAKSEAKVKQRTEVRSAVVTGPTEWLEKLRGGLADLKAAGNIADLSLTQGEAGESAP
+LTVSDVQLAPVEDD
+>TT9_LFPAFLNI_00925
+MAENTQGTDTPIDASTPSTPAAGAVAVPDKPALEGLEEKLTARWADERTYAFDTQTTREQVYSIDTPPPTASGSLHVGHV
+FSYTQTDVLARYQRMNGKNVFYPMGWDDNGLPTERRVQNYYGVRCDPAKPYVEGYRPPEKPAKNQRDWDVISRKNFIELC
+EELAVEDEKVFEDLFTRLGLSVDWDMTYRTIDDVSRAVSQRAFLAGIASGDAYLAEAPTMWDVTFRTAVAQAELEDREVP
+GAYHRYAFTAADGEQVFIETTRPELLASCSGLVAHPDDERYQHLFGTTVTSPLYGVEVEVFPHPLAKPDKGSGIAMVCTF
+GDLNDVTWWRELQLPTRTLIGRDGRFAADTPEWITTDAGRQAYADTVAGKTVFSAKQGVVDALTAAGLLDGEPKKIMHAV
+NFYEKGDKPLEVVTSRQWYIRNGGRDADRRAELIERGRELSWHPEHMRHRYENWVEGLNGDWLVSRQRFFGVPIPVWYPL
+DAEGEPDYENPILPADEQLPVDPAAEAAPGYSEDQRDVPGGFTGDPDVLDTWATSSLTPQIVGRWSRDEAFFNNVFPFDL
+RPQGHDIIRTWLFSTVVRAHALNGSVPWTDTALSGWILDPDRKKMSKSKGNVVVPTDILDQFGSDAVRYWAASARLGADT
+AYEVAQMKIGRRLAIKLLNAAKFVLNLGATQDAVIRTADDAAAVTNPLDASLLARLAATVEQATRAFEAYDYARALNVTE
+QFFWAFTDDYVELVKDRAYGGHGEAEQASVVTTLATTLDALLRLLAPFQPFATEEVWSWWRAGSVHTAAWPGAADEVAAL
+SFAASGGDAEVLPTVAQVLGGVRKAKSEAKVKQRTEVRSAVVTGPADWLEKLRGGLADLKAAGNIADLSLTQGEAGESAP
+LTVSDVQLAPAEDD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001329.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001329.fa
new file mode 100644
index 0000000000000000000000000000000000000000..47778dbf8beb281e2d307756b3d8d7e476f75e41
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001329.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01910
+MSENT-QPVVDFYFDPTCPFAWITSRWILEVEKVRDIQVKFHQMSLYMLNEGRDLPEDYR
+RSTDRGLIPGRGTQHVGAEH-PERLAEWYTALGTRIHNEGQKDYEAALTGAAVDLGLDPA
+PILAATETDAEDERLREKQRAAEELVGNDVGTPVVSFNGTAFFGPVLTRIPRGEEAGRIF
+DGAVALAEYPYFYEIKRARTTDPQFD
+>KBS0714_MOLHKGIG_00980
+MTDTTQQPTVDFYFDATCPFAWITSRWILEVQKVRDVRVVFKIMSLAVLNEGRDLDPDYL
+ARLEKAWLPARAAVQVRERHGAEALGPWYTAVGTRIHEQGRTDYEAVVAEALEELGHD-A
+DILDAARTDVADEQLRASQKEAEDLVGNDVGTPVVAFNGTAFFGPVMTRIPRGEEAGRIF
+DGAVALADFPYFYEIKRARTTDPQFD
+>KD337_NAFOICDF_01857
+MSENT-APVVDFYFDPTCPFAWITSRWILEVEKVRDLSVTFHQMSLYMLNEGRELPEDYR
+RHTDRGLMPGRATLHVGEHH-PELLSDWYTAVGTRIHNEGNQDYEAVVTGAAAELGLDAA
+PILEATRTDAADDDLRAKQRAAEELVGNDVGTPVVSFDGTAFFGPVMTRIPRGEEAGEIF
+DAAVRLAQFPYFYEIKRARTTDPQFD
+>SA211_MHAAABBN_00694
+MTDTTQQPTVDFYFDATCPFAWITSRWILEVQKVRDVRVVFKIMSLAVLNEGRDLDPDYL
+ARLEKAWLPARAAVQVRERHGAEALGPWYTAVGTRIHEQGRTDYEAVVAEALEELGHD-A
+DILDAARTDVADEQLRASQKEAEDLVGNDVGTPVVAFNGTAFFGPVMTRIPRGEEAGRIF
+DGAVALADFPYFYEIKRARTTDPQFD
+>TT9_LFPAFLNI_00923
+MTDTTQQPTVDFYFDATCPFAWITSRWILEVQKVRDVRVVFKIMSLAVLNEGRDLDPDYL
+ARLEKAWLPARAAVQVRERHGAEALGPWYTAVGTRIHEQGRTDYEAVVAEALEELGHD-A
+DILDAARTDVADEQLRASQKEAEDLVGNDVGTPVVAFNGTAFFGPVMTRIPRGEEAGRIF
+DGAVALADFPYFYEIKRARTTDPQFD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001331.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001331.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8d7b162f395a4d928941d5582e0b24f50585c10b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001331.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01912
+MTQFPAGLPTGTPSMPTPDARYILPQFEERTPYGFKRQDPYAKLFEDRIVFLGSQVDDAS
+ADDVMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAA
+AVLLAAGAPGKRLALPNARVLIHQPAMQGDRGTATDLEIQAQEINRMRVWMEQTLASLTN
+RTPEEVSRDIDRDKFLSAEQALEYGLVDEVLASRKITRPAG
+>KBS0714_MOLHKGIG_00978
+MTQFPAGLPTGMPSLPTPDARYILPQFEERTPYGFKRQDPYAKLFEDRIVFLGAQVDDAS
+ADDVMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAA
+AVLLAAGAPGKRLALPNARVLIHQPAMQGDRGTATDLQIHAQEINRMRVWMEETLASLTN
+RTPEEVSQDIDRDKFLSAEQALEYGLVDEVLASRKITRPSA
+>KD337_NAFOICDF_01859
+MTQFPAGLPVGTPSQAAPSARYILPQFEERTPYGFKRQDPYAKLFEDRIVFLGSQVDDAS
+ADDIMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAA
+AVLLAAGAPGKRLALPNARVLIHQPAMQGDRGTATDLEIHANEINRMRVWMEQTLASLSN
+RTPEDVSRDIDRDKFLSAEGAKEYGLVDEVLAPRKITRTGA
+>SA211_MHAAABBN_00692
+MTQFPAGLPTGMPSLPTPDARYILPQFEERTPYGFKRQDPYAKLFEDRIVFLGAQVDDAS
+ADDVMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAA
+AVLLAAGAPGKRLALPNARVLIHQPAMQGDRGTATDLEIHAQEINRMRVWMEETLASLTN
+RTPEEVSQDIDRDKFLSAEQALEYGLVDEVLASRKITRPSA
+>TT9_LFPAFLNI_00921
+MTQFPAGLPTGMPSLPTPDARYILPQFEERTPYGFKRQDPYAKLFEDRIVFLGAQVDDAS
+ADDVMAQLLVLEAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAA
+AVLLAAGAPGKRLALPNARVLIHQPAMQGDRGTATDLEIHAQEINRMRVWMEETLASLTN
+RTPEEVSQDIDRDKFLSAEQALEYGLVDEVLASRKITRPSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001333.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001333.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4cce8a66ee312498b533f4465d8f6d50326b054d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001333.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_01914
+MVKSTAENLSPTRVKLNVEVPFEEVKPSLDKAYKDIANQVQIPGFRKGKIPARLIEQRFG
+REAVVDQAVNEGLNTWFSAAISEAELTPISRPEVDVTATPDSENAEGPVVFTAEFDVRPT
+IELPDYKGLKVTVEPAKATEEDEQKALDALRSRFGSLKDVDRPAAQDDFVTMNLTASVDG
+EQVDQAEGLSYQVGAGTMLEGIDEALDGLSAGEDATFESTLNGGEHDGKTAVVKLELTAV
+KERELPEADDEFAQLASEFDTIDELKEDLKKQAAEDAVNRQGVEARDKVLAELAKLVEVP
+VPDGVITEQVEQHFSAGGHAAGDDHDTPEHRAELEANTREAFANEVILDEVAEAEEVTVD
+QGELIEYIIATSSEYGMDPNQFAMMLDQGGQIPMIMGEVRRRKALAKVLEFAEVTDTDGK
+AVDLKAFVTPGGQEALDAEAEGADPA---EAEEKPAKKAAAKKPAAKKAPAKKKAEEKAD
+DAEASEQA
+>KBS0714_MOLHKGIG_00976
+MVKSTAENLSPTRVKLTVEVPFEEVKPALDKAFKDIANQVQIPGFRQGKIPARLIEQRFG
+REIVVDQAVNEGLNTWFSAAIAEAEVTPISRPEVDVTATPDAENAEGPVAFTAEFDVRPT
+IELPDYKGLKVTVEPAQATEEDEQKALDALRSRFGSLKDVDRPAAQDDFVTMNLTATVDG
+EQVDQAEGLSYQVGAGTMLEGIDEALDGLSAGEDATFETTLNGGEHDGETAVVKLELTAV
+KERELPEADDEFAQLASEFDTIAELKEDLKKQAAEEAVNRQGVEARDKVLEELAKLVEVP
+VPDGVIAEQVEQHFSAGGHTAGDDHDTAEHRAELEQNTREAFANEVILDEVAEAEEVTVD
+QGELIEYIIATSSEYGMDPNQFAMMLDQGGQIPMIMGEVRRRKALAKVLEYAEVTDTDGK
+AVDLTAFVTPGGQEALDAEAEGAEAEGADEAEEKPAEKA----PAKKKSTAKKAPAEQAD
+DAEAAEQA
+>KD337_NAFOICDF_01861
+MVKSTAENLSPTRVKLTVEVPFEEVKPVLDKAYKDIAMQVQVPGFRQGKVPARLIEQRFG
+REAVVDQAVNDGLNTWFGQALAEAEVTPISTPEVDVTATPAA--AEGPVEFTAEFDVRPT
+IELPDYKGIEVTVEPAQATDEDEQAQLDALRSRFGTLKDVDRPAAKDDFVTMDLTATVGE
+EQVDQAQGLSYQVGAGTMLDGIDEALEGLSAGEDATFETTLNGGEHDGETATVKLVLQAV
+KERELPEADDDFAQLASEFDTIAELKEDLKKKAAEAAETRQGVEARDKVLAELGKLVEVP
+VPENVIAEQLEQHFSQGGHSAGDEHDTPEHREELEKNTREAFANEVILDEVAEAESVTVD
+QGELIEYIFATSAEYGMDPNQFAMMLDQAGQIPMIMGEVRRRKALAKVLEHAVVTDTDGN
+AVDLTAFVTPAAAEEE-------------KAEEKPAKKAPAKKAAAKKAAAKKPAAKKA-
+EAEESEEA
+>SA211_MHAAABBN_00690
+MVKSTAENLSPTRVKLTVEVPFEEVKPALDKAFKDIANQVQIPGFRQGKIPARLIEQRFG
+REVVVDQAVNEGLNTWFSAAIAEAELTPISRPEVDVTATPDAENAEGPVVFTAEFDVRPT
+IELPDYKGLKVTVEPAQATEEDEQKALDALRSRFGSLKDVDRPAAQDDFVTMNLTATVDG
+EQVDQAEGLSYQVGAGTMLEGIDEALDGLSAGEDATFETTLNGGEHDGETAVVKLELTAV
+KERELPEADDEFAQLASEFDTIAELKEDLKKQAAEEAVNRQGVEARDKVLEELAKLVEVP
+VPDGVIAEQVEQHFSAGGHTAGDDHDTAEHRAELEQNTREAFANEVILDEVAEAEEVTVD
+QGELIEYIIATSSEYGMDPNQFAMMLDQGGQIPMIMGEVRRRKALAKVLEYAEVTDTDGK
+AVDLTAFVTPGGQEALDAEAEGAD-----EAAEQA-------------------------
+--------
+>TT9_LFPAFLNI_00919
+MVKSTAENLSPTRVKLTVEVPFEEVKPALDKAFKDIANQVQIPGFRKGKIPARLIEQRFG
+REIVVDQAVNEGLNTWFSAAIAEAELTPISRPEVDVTATPDAENAEGPVAFTAEFDVRPT
+IELPDYKGLKVTVEPAQATEEDEQKALDALRSRFGSLKDVDRPAAQDDFVTMNLTATVDG
+EQVDQAEGLSYQVGAGTMLEGIDEALDGLSAGEDATFETTLNGGEHDGETAVVKLELTAV
+KERELPEADDEFAQLASEFDTIAELKEDLKKQAAEEAVNRQGVEARDKVLEELAKLVEVP
+VPDGVIAEQVEQHFSAGGHTAGDDHDTAEHRAELEQNTREAFANEVILDEVAEAEEVTVD
+QGELIEYIIATSSEYGMDPNQFAMMLDQGGQIPMIMGEVRRRKALAKVLEYAEVTDTDGK
+AVDLTAFVTPGGQEALDAEAEGAEAEGADEAAEQA-------------------------
+--------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001335.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001335.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e5a23f5c0caca9800e4d6e3a1d43b0ccc2b6b0e3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001335.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01918
+MPEGHSIHRLARQFTDVFGGWPIRASSPQGRFAEGAARMDGQVLEAARAHGKHFFADLAD
+GHVLNVHLGMYGAWSFGGDERFDAASSIGAPRRIGEREVHADGAAAAEPDRDDDGWVLPP
+PPVPTVRLRVRAEHGWADLIGASTCRLLTPAEAGDVVAKLGPDPLNDDDPAPFLDLAGRT
+RRPIGAVLMDQAAVGGIGNIFRAEALFRAGLDPWRPSNAVPREVLRRLWSDNAELMREGV
+RLGRIVTTRPEHRPGVPAEQAWPEHANYVYQRQGSPCLVCGQDAIVVEGMAARKLYRCTV
+CQR
+>KBS0714_MOLHKGIG_00972
+MPEGHSVHRLARQFTDVFGGRRIRATSPQGRFAEGAALLDGQVLKRARAHGKHFFADVSG
+GHVLHVHLGMYGAWTFGGDQDFAAASSIGAPRRIGEREVHDDGAPAAEPARDADGWVQPP
+PPAATVRLRLRAEHGWADLIGASRCRALTPAEAADVVAGLGPDPLSDDDPAPFYDLARRT
+RRPIGVVLMDQAAVSGIGNIFRAEALFRVGIDPWRPARDVSASELESLWADNAALMREGV
+RLGRIVTTRPEHRPGIPAEAAWPEHASYVYQRQGLACLVCGRETIVVEEMAARKLYRCLT
+CQS
+>KD337_NAFOICDF_01866
+MPEGHSIHRLARQVQDVFGGQALAASSPQGRFADGAALLDGRVLERAWAHGKHFFADIEG
+GLTLNVHLGMYGAMTFGGDEAFAAASSIGAPRRIGETE--DHGALAA---------AEPP
+PARPTVRLRLRSAHGWADLIGAGTCRVLTPQELAEVTSKLGPDPLNDDDPAAFVARAART
+GRPVGVVLMDQSMVGGIGNIYRAEVLFRAGLDPWTPARDVGADVLAALYADAQALMRDGV
+RLGRIVTTAPEHRPGVAAEDAWPEHANYVYRRQGMPCRVCGQDAIVREEMAARNLFRCTD
+CQR
+>SA211_MHAAABBN_00685
+MPEGHSVHRLARQFTDVFGGRRIRATSPQGRFAEGAALLDGQVLKRARAHGKHFFADVSG
+GHVLHVHLGMYGAWTFGGDQDFAAASSIGAPRRIGEREVHDDGAPAAEPARDADGWVQPP
+PPASTVRLRLRAEHGWADLIGANRCRALTRAEAADVVAGLGPDPLNDDDPAPFYDLARRT
+RRPIGVVLMDQGAVSGIGNIFRAEALFRAGIDPWRPAREVSAPDLAFLWADNAALMREGV
+RLGRIVTTRPEHRPGIPAEAAWPEHANYVYQRQGLACLVCGRETIVVEEMAARKLYRCLT
+CQS
+>TT9_LFPAFLNI_00915
+MPEGHSVHRLARQFTDVFGGRRIRATSPQGRFAEGAALLDGQVLKRARAHGKHFFADVSG
+GHVLHVHLGMYGAWTFGGDQDFAAASSIGAPRRIGEREVHDDGAPAAEPARDADGWVQPP
+PPAATVRLRLRAEHGWADLIGASRCRALTPAEAADVVAGLGPDPLSDDDPAPFYDLARRT
+RRPIGVVLMDQAAVSGIGNIFRAEALFRAGIDPWRPAREVSASDLAFLWADNAALMREGV
+RLGRIVTTRPEHRPGIPAESAWPEHANYVYQRQGLACLVCGRETIVVEEMAARKLYRCLT
+CQS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001336.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001336.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dc5416c664ae44c89e60d482d2037a338a31fdcd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001336.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_01920
+MSSSARLNITREEAAQRAAALTVDAYEVSLDLTRGPERFRTASTVTFAASEDAVGTHTWIDFVASQAPEVTLNGERVAVE
+DYDGARLPIGPLAAQNTLVVEGLGDYSNTGEGLHRFVDPVDQEVYLYTQFEVPDSRRMFAVFEQPDLKAAFRFTVTAPAH
+WAVVSNQPEASRRTLGVVENEDQLSGVDAAVWEFVPTPRISSYITALVAGPYAAVHSELTSADGRTIPLGVYCRASLVEH
+LDADNVFELTRQGFEFFEAQYGHPYPFEKYDQLFVPEFNAGAMENAGCVTFLESYVFRGTVPEAMVERRAITILHELAHM
+WFGDLVTMRWWNDLWLNESFAEFMSTLAAAENTRYTGSWTTFSSMEKNWAYRQDQLSSTHPIKAQIRDLDDVLVNFDGIT
+YAKGASVLRQLVAWVGQENFMAGVRAYIAKHAWSNTELPDLMSELEAASGRDLSEWTRVWLETSGVNTLRTEVETDEAGV
+ITALRLRQSAPDGSPSAPGDDVLRPHRLAVGFYDVDEATGRLTRTERFELDVAGEVTEVAEAAGRRRPALILPNDDDLAY
+AKLRLDHASWEAASTRLKDVDSSLARTLLWGAAWDAVRDGEASAAWFADLILANIGHEQDSSVVQTLLRQLATSLGQYLP
+EEQSTAARAAVADRLWGLVAGAEDGSDSQLQFVKAFALHARTAAQLDRLAGVVDGTHTVPGLDLTTDLRWELLTALVAAG
+RAGEAEIAAAEREDATATGALAAIQARAAVPTAEAKQAAWDRVMAGELSNTEQRQALIGFARAHEAALLAPFADAYFEGV
+EAMWDSRSHEMAETAAVLGYPAAQVSDETAQRATALSEKTAGTRAGLSRVLAEGRDETVRALAAREHAAAHVHEVSASA
+>KBS0714_MOLHKGIG_00967
+MTTAAAMNITREEAAARAAALTVDAYEVSLDLTRGAEHFHTATTVTFAATQDAVGTHTWIDFVAEQAPTVTLNGEALDVA
+DFDGARLRIGPLAAQNTLVVDGLGDYSNTGEGLHRFVDPVDQEVYLYTQFEVPDSRRMFAVFEQPDLKAAFRFTVTAPAH
+WAVVSNQPEASRRTLGVVANEENPQGVDAAVWEFKPTPRIPSYITALVAGPYASVHSELTSADGRTIPLGVYCRASLVEH
+LDAENVFELTRQGFEFFEAQYGHAYPFEKYDQLFVPEFNAGAMENAGCVTFLESYVFRGTVPEALIERRAITILHELAHM
+WFGDLVTMRWWNDLWLNESFAEFMSTLAAAENTQYTGAWTTFSSMEKNWAYRQDQLSSTHPIKARIRDLDDVLVNFDGIT
+YAKGASVLRQLVAWVGQENFMVGVRAYIAKHAWQNTELPDLMTELEAASGRDLSEWTRVWLETSGVNTLRTEVETDEAGT
+ITALRLRQSAPDGSPSAPGDDVLRPHRLAVGFYDVDEATGRLIRTERFELDVAGEVTEVVEAAARRRPAVILPNDDDLAY
+AKLRLDDASWEAASTRLKDVDGSLARTLLWGAAWDTVRDGEASAAWFVDLVLANVGHERDSSVVQTLLRQLATAIGLYLP
+EDQAEAVRVAAADRLWGLVAEAEDGSDNQLQFVKAFALHARTTAQLDRLSALVDGTRTVPGLDLTTDLRWELLTALVAAG
+RAGEAEIAEAERADATATGALAAIQARAAVPTAEAKRAVWDRVMAGELSNTEQRQALIGFARVHDAALIAPFADAYFEGV
+EAMWDSRSHEMAETAATLGYPTAQVTPEIADRATALSERLADTRAGLSRVLAEGRDETIRALAAREHATAHVHQVHAGA
+>KD337_NAFOICDF_01868
+MTTAAAMNITREEAAARAAALTVESYQVALDLTRGAERFGSTTTVTFSAADEAVGTQTWIDFMATQAPEVTLNGQAVDVA
+DFDGARLPIGPLAAENTLVVDGLADYTTTGEGLHRFVDPVDDEVYLYSQFEVPDSRRMFAVFEQPDLKATFAFTVTAPAH
+WAVVSNQPEAAHRTLGVVETPEAPEGVDAAVWEFTPTPRISSYITALVAGPYKSVHSELTSADGRTVPLGVYCRGSLFEH
+LDADEVFDLTRRGFEFFEAQYGHPYPFDKYDQLFVPEFNAGAMENAGCVTFLESYVFRGTVTDAVRERRAITILHELAHM
+WFGDLVTMKWWNDLWLNESFAEFMSTLAAAENTRYEGAWTTFSSMEKNWAYRQDQLSSTHPITAEIRDLDDVLVNFDGIT
+YAKGASVLRQLVAWVGQENFMAGVRAYIEKNAWSNTELPDLMTELEAASGRDLSEWTRLWLETSGVNTLAVQVDADYAGT
+ITSLRLHQSAPDGSPAAPGDDVLRPHRIAVGFYDLDEATGRLTRTERFELDAAGEVTEVAEAAGRRRPALILPNDDDLAY
+AKIRLDDASWETAGARLADVDSSLARTLLWGAAWDTVRDGEASAAWFVDLILTNIGREQDSTVIQTLLRQLATAISQYLP
+EERSAQVRADAANRLWMLVEQAEPGSDAQLQFVKAFALHAREEGQLTALADVWDRSSELPGLDLTTDLRWELLTALVAAG
+RAGETEIAAAETEDPTATGALAAALARAAVPTAEAKQTAWDQVVAGTLSNTTQRQVLLGFQRAHDPALLAPFTDAFFGSI
+QDVWGSRSHEMAETVAVLGFPSSQVCQEVVDRATALSDEVRGTNAGLARTLAESRDEMARALKARAAA-----------
+>SA211_MHAAABBN_00680
+MTTAAAMNITREEAAARAAALTVDAYEVSLDLTRGAEHFHTATTVTFAATQDAVGTHTWIDFVAGQAPTVTLNGEALDVA
+DFDGARLRIGPLAAQNTLVVDGLGDYSNTGEGLHRFVDPVDQEVYLYTQFEVPDSRRMFAVFEQPDLKAAFRFTVTAPAH
+WAVVSNQPEDSRRTLGVVANEENLQGVDAAVWEFTPTPRISSYITALVAGPYASVHSELTSADGRTIPLGVYCRASLVEH
+LDAENVFELTRQGFEFFEAQYGHAYPFEKYDQLFVPEFNAGAMENAGCVTFLESYVFRGTVPEALIERRAITILHELAHM
+WFGDLVTMRWWNDLWLNESFAEFMSTLAAAENTQYTSAWTTFSSMEKNWAYRQDQLSSTHPIKARIRDLDDVLVNFDGIT
+YAKGASVLRQLVAWVGQENFMAGVRAYIAQHAWGNTELPDLMSELEAASGRDLSEWTRVWLETSGVNTLRTEVETDEAGT
+ITALRLRQSAPDGSPSAPGDDVLRPHRLAVGFYDVDEATGRLTRTERFELDVAGEVTEVAEAVGRRRPAVILPNDDDLAY
+AKLRLDDASWEAASTRLKDVDGSLARTLLWGAAWDTVRDGEASAAWFVDLVLANVGHERDSSVVQTLLRQLATAIGLYLP
+EDQAEAVRVAAADRLWGLVAEAEDGSDNQLQFVKAFALHARTTAQLDRLAALVDGTRTVPGLDLTTDLRWELLTALVAAG
+RAGEAEIAEAERADATATGALAAIQARAAVPTAEAKRAAWDRVMAGELSNTEQRQALIGFARVHDAALIAPFADSYFEGV
+EAMWDSRSHEMAETAATLGYPTSQVSRETADRATALSERLADTRAGLSRVLAEGRDETVRALAAREHATAHVHQVHAGA
+>TT9_LFPAFLNI_00913
+MTTVAAMNITREEAAARAAALTVDAYEVSLDLTRGAEHFHTATTVTFAATQDAVGTHTWIDFVAEQAPTVTLNGEALDVA
+DFDGARLRIGPLAAQNTLVVDGLGDYSNTGEGLHRFVDPVDQEVYLYTQFEVPDSRRMFAVFEQPDLKAAFRFTVTAPAH
+WAVVSNQPEASRRTLGVVANEENPQGVDAAVWEFKPTPRIPSYITALVAGPYASVHSELTSADGRTIPLGVYCRASLVEH
+LDAENVFELTRQGFEFFEAQYGHAYPFEKYDQLFVPEFNAGAMENAGCVTFLESYVFRGTVPEALIERRAITILHELAHM
+WFGDLVTMRWWNDLWLNESFAEFMSTLAAAENTQYTSAWTTFSSMEKNWAYRQDQLSSTHPIKARIRDLDDVLVNFDGIT
+YAKGASVLRQLVAWVGQENFMAGVRAYIAQHAWGNTELPDLMSELEAASGRDLSEWTRVWLETSGVNTLRTEVETDEAGT
+ITALRLRQSAPDGSPSAPGDDVLRPHRLAVGFYDVDEATGRLTRTERFELDVAGEVTEVAEAVGRRRPAVILPNDDDLAY
+AKLRLDDASWEAASTRLKDVDGSLARTLLWGAAWDTVRDGEASAAWFVDLVLANVGHERDSSVVQTLLRQLATAIGLYLP
+EDQAEAVRVAAADRLWGLVAEAEDGSDNQLQFVKAFALHARTTAQLDRLAALVDGTRTVPGLDLTTDLRWELLTALVAAS
+RAGEAEIAEAERADATATGALAAIQARAAVPTAEAKRAAWDRVMAGELSNTEQRQALIGFARVHDAALIAPFADSYFEGV
+EAMWDSRSHEMAETAATLGYPTAQVTREIADRATALSERLAGTRAGLSRVLAEGRDETVRALAAREHATAHVHQVHAGA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001337.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001337.fa
new file mode 100644
index 0000000000000000000000000000000000000000..af25dd9236868c07c48e1b32b6a3507d097f6a72
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001337.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01921
+MKHTFALRTEWTGNRGTGTSGVRDYDRSVVIQDAAVGEIHASAARPFRGDDSKWNPETLL
+LGALAECHVLSYLHVAATSGLVVTGMACAAEGVLEVDGDGAGRFAAVTLRPEVALQDEAD
+RERADALHAEAHRLCFIANSLSAPVSVEPAVAGSGAAASGGPALPDHSSRLGAPLAVLRP
+RVAKRPSQVTGLAERPTEVEPVMKAGAPAPVDQMQARDAAAGRA-ASP------------
+ATPAPAAETAAPGQAASFYEAVGGRETFDRLTAEFYARVREDELLSPMYPQDDFEGAQRR
+LLMFLEQYWGGPRTYSEERGHPRLRMRHAPYRIDPAARDAWLTHMRAAVDTLGLSPLHEA
+ELWDYLERAAHSLQNSA
+>KBS0714_MOLHKGIG_00966
+MKHTFSLRTEWTGDRGSGTSGVRDYDRSVVIQDAAVGEIQASAARPFRGDDSKWNPETLL
+LGALAECHVLSYLHVAATSGVVVTGMTCGVEGELEVDGDGAGRFTAITLRPEVTLQDEAD
+RERAEALHAEAHRLCFIANSLSAPVAVEP--VRPEALPTGAPTLPDHSARLGAPLAVLRP
+RVAKGPSRVTGLAERPTEVEPVMQEGTPAPVEQVRARDAAAGPAGATP------------
+GTP------AAPGQAASFYDAVGGRPTFDRLTAEFYARVREDEILAPMYPQDDFEGAQRR
+LLMFLEQYWGGPRTYSEERGHPRLRMRHAPYRIDPAARNAWLRHMRAAVDTLELSPLHEA
+ELWDYLERAAHSLQNSA
+>KD337_NAFOICDF_01869
+MKHTFSLRAEWTGDRGTGTTGVRDFDRSVVIQESEVGEIHASAARPFRGDAAKWNPETLL
+LGALAECHVLSYLHAAATGGLVVTGMTCAAEGTLEVDSDGAGRFASITLRPEVALRDEAD
+RARADELHAEAHRMCFIANSISAPITVEA-GPGSSPTRGDGAALPDHSARLGAPLAVLRP
+RVANRPTRVTGLADRPTEAEPVVRADAPSGAEQARARDEATARG-ERPPSATPIATPAPG
+ATPAASPATAAPGQATSFYEAVGGHPTFEKLVHVFYQGVREDPLLAPMYPHQDWDGAEER
+LRMFLEQYWGGPRTYSERRGHPRLRMRHMPFTVDPAARDAWLRHMRAAVDAVELSPLHEA
+ELWDYLERAAHSLQNSA
+>SA211_MHAAABBN_00679
+MKHTFSLRTEWTGDRGSGTSGVRDYDRSVVIQDAAVGEIQASAARPFRGDDSKWNPETLL
+LGALAECHVLSYLHVAATSGVVVTGMTCGVEGELEVDGDGAGRFTAITLRPEVTLQDEAD
+RERAEALHAEAHRLCFIANSLSAPVAVEP--VRPEALPTGTSTLPDHSARLGAPLAVLRP
+RVAKGPSRVTGLAERPTEVEPVMQEGTPAPVEQVRARDAAAGPTGATP------------
+GTP------AVPGQATSFYDAVGGRPTFDRLTAEFYARVREDEILAPMYPQDDFEGAQRR
+LLMFLEQYWGGPRTYSEERGHPRLRMRHAPYRIDPAARDAWLRHMRAAVDTLELSPLHEA
+ELWDYLERAAHSLQNSA
+>TT9_LFPAFLNI_00912
+MKHTFSLRTEWTGDRGSGTSGVRDYDRSVVIQDAAVGEIQASAARPFRGDDSKWNPETLL
+LGALAECHVLSYLHVAATSGVVVTGMTCGVEGELEVDGDGAGRFIAITLRPEVTLQDEAD
+RERAEALHAEAHRLCFIANSLSAPVTVEP--VRPEALPTGTPTLPDHSARLGAPLAVLRP
+RVAKGPSRVTGLAERPTEVEPVMQEGTPAPVEQVRARDAAAGPAGATP------------
+GTP------AAPGQATSFYDAVGGRPTFDRLTAEFYARVREDEILAPMYPQDDFEGAQRR
+LLMFLEQYWGGPRTYSEERGHPRLRMRHASYRIDPAARDAWLRHMRAAVDTLELSPLHEA
+ELWDYLERAAHSLQNSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001338.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001338.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0a4ff29a028fda89a1a86366cbdf2c99cc198db1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001338.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01923
+MPQRHPAPRPGRAPARPASAPKDPTDMLRGILELNRADADPLTGQPRFTGTTPRQAHGRV
+FGGQVLAQALAAASRTISADRPVHSIHGYFIRPGDALQPITFTVETLRDGRSFSVRRVLA
+TQNEKAILALTCSFQEPAEAALDHQVAMPEGVPAPEDLPSTADVLGRINHPIAQEWAWAR
+PFDIRHVTPAIYVDPAPEAENRNMVWMKTFTPLADDPALHVAALTYASDYTLLEPVLRQH
+GVAWIQPGMSVASLDHAMWFHRPARADEWLLYVQHSPSAQGARGLGTGSVFTRDGTLVAT
+VAQEGMIRMPEGAAARRARLQGAAQRFALRTVLRRSWRR
+>KBS0714_MOLHKGIG_00964
+--------------------------MLRGILELTPAAPDPVTGQVRFTGTTPRQTRGRV
+FGGQVLAQALAAASRTVPAARPAHSLHGYFIRPGDALQPITFTVETLRDGRSFSVRRVLA
+SQNEKAILALTCSFQEPAGSALDHQVAMPEGVPRPEDLPTTADVLGGINHPVAQEWAWSR
+PFDIRHVTPAIYVDPAAETENRNMVWMKTFTPLADDPALHLAALTYASDYTLLEPILRQH
+GVAWIQPGMSAASLDHAMWFHRPARVDQWLLYVQDSPSAQGARGLGTGAVFTEDGTLVAT
+VAQEGMVRLPEGAAARRARVRGAAQRMAMRTVLRRSWRR
+>KD337_NAFOICDF_01872
+M-----SPKP---PARPATAPQDPTEALRGLLDLTDAGPDPVTGEPRFEGRTPAQVGPRV
+FGGQVLGQALAAASRTVPTARSAHSLHGYFIRPGDALQPITFTVETLRDGRSFSVRRVLA
+SQNEKAILALTCSFQEPTGSALDHQVAMPEGVPRPEDLPTTADVLGGINHPVAQEWAWSR
+PFDIRHVTPAIYVDPAAETENRNMVWMKTFTPLADDPALHLAALTYASDYTLLEPILRQH
+GVAWIQPGMSVASLDHAMWFHRPARVDEWLLYVQDSPTAQGARGLGRGHVFTRDGELVAT
+VAQEGMIRLPEGHAATAAKAKNVVQRAAMKTVLRRTWRG
+>SA211_MHAAABBN_00677
+MPQRHPRPRPGRAPARPASAPKDPTDVLRGILELTPAAPDPVTGQVRFTGTTPRQTHGRV
+FGGQVLAQALAAASRTVPAARPAHSLHGYFIRPGDALQPITFTVETLRDGRSFSVRRVLA
+SQNEKAILALTCSFQEPAGSALDHQVAMPEGVPRPEDLPTTADVLGGINHPVAQEWAWSR
+PFDIRHVTPAIYVDPAAETENRNMVWMKTFTPLADDPALHLAALTYASDYTLLEPILRQH
+GVAWIQPGMSAASLDHAMWFHRPARVDQWLLYVQDSPSAQGARGLGTGAVFTEDGTLVAT
+VAQEGMVRLPEGAAARRARVRGAAQRMAMRTVLRRSWRR
+>TT9_LFPAFLNI_00910
+--------------------------MLRGILELTPAAPDPVTGQVRFTGTTPRQTRGRV
+FGGQVLAQSLAAASRTVPGARPAHSLHGYFIRPGDALQPITFTVETLRDGRSFSVRRVLA
+SQNEKAILALTCSFQEPAGSALDHQVAMPEGVPRPEDLPTTADVLGGINHPVAQEWAWAR
+PFDIRHVTPALYVDPAPETENRNMVWMKTFTPLADDPALHRAALTYASDYTLLEPILRQH
+GVAWIQPGMSVASLDHAMWFHRPARVDQWLLYVQDSPSAQGARGLGTGAVFTEDGTLVAT
+VAQEGMIRLPEGAAARRARVRGAAQRMALRTVLRRSWRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001344.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001344.fa
new file mode 100644
index 0000000000000000000000000000000000000000..da01ac8b10c3e42d990400db016c7359c0cdf1fa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001344.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_01931
+MSETSTPAPENAPLVWIDCEMTGLHPHVDELVEVAVLITDAELNILDEGIDLVIRPSEAA
+LAQMDPFVRDMHTTSGLLPELEHGLTLENATARVMEYLTARVPAGKALLAGNTVGQDKLF
+LSAYMPAVVEHLHYRIVDVSTVKELARRWYPRAYYQAPAKTGGHRALGDIRDSITELRYY
+RAAVMAPSPGPTSEEAQAIARVVAEAQA
+>KBS0714_MOLHKGIG_00956
+MSETSTPTPESAPLVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAA
+LEQMDPFVRDMHTTSGLLPELAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF
+LARYMPAVVDHLHYRIVDVSTVKELARRWYPRAYYQAPAKTGGHRALGDIKDSITELRYY
+RAAVMAPAPGPTTEEARAIAEVVSGAQA
+>KD337_NAFOICDF_01883
+MSETSTPAPESAPLVWIDCEMTGLDPDVDVLVEVAVLITDSELNVLDEGLDLVIRPTPEA
+LAQMDPFVRDMHTSSGLLPELAEGLELDDAAARVLEYIAARVPAGKGLLAGNSVGQDKLF
+LARYMPAVIDHLHYRIVDVSTVKELARRWYPRAYYQAPAKTGGHRALGDIRDSITELRYY
+REAVMVPAPGPTSEEARAIAEVVSGAQA
+>SA211_MHAAABBN_00669
+MSETSTPAPESAPLVWIDCEMTGLHPQVDELVEVAVLITDAELNTLDEGIDLVIRPSAAA
+LEQMDPFVRDMHTTSGLLPELAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF
+LARYMPAVVDHLHYRIVDVSTVKELARRWYPRAYYQAPAKTGGHRALGDIKDSITELRYY
+RAAVMAPAPGPTTEEARAIAEVVSGAQA
+>TT9_LFPAFLNI_00902
+MSETSTPTPESAPLVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSEAA
+LEQMDPFVRDMHTTSGLLPELAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF
+LARYMPAVVDHLHYRIVDVSTVKELARRWYPRAYYQAPAKTGGHRALGDIKDSITELRYY
+RAAVMAPAPGPTTEEARAIAQVVSGAQA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001348.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001348.fa
new file mode 100644
index 0000000000000000000000000000000000000000..be0f5a807a90e1fbfabe84be01798f920cfeed89
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001348.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01996
+MADTASTQTPEWNTQQELAERMVPLLGSLYRENNVVTSIYGRSLVNRGVIDIIKAHRYARRVQDAPLSVAATYPLVEAMA
+AMDLGAANVDLAELAARHKESGQEVQAFLDAELAEVKGKGGEGLGEPQDVVLYGFGRIGRLLARILLDHAGGGSKLRLRA
+VVVRKNSEDDLVKRASLLRRDSIHGPFDGTIVVDEDRNVITANGTEIQVIYSNDPTTVDYTAHGIKDALVIDNTGRWRDD
+EGLSQHLQAKGVKKVLLTAPGKGEMKNIVFGVNSDDITPEDTIVSAASCTTNGITPVLKVIQDDYGIDHGHVETVHAYTN
+DQNLTDNFHKGSRRGRSAGLNMVLTETGAAKAVAKALPELKGKLSGNAIRVPTPDVSMAILNLELNKATSVEELNARLKQ
+ESLTGVLRGQVGYVDSPEVVSTDFVGSDRAGVVDGLATLVNNEGKNAILYVWYDNEYGYSHQVVRVVSGPRPGRDQAPSA
+RPWSASGPCCSIASASSSSSCPKGSSSVPGSQVTPGTFMRSARCARFQRRCHLPSRRLT
+>KBS0714_MOLHKGIG_00942
+MADTASTQTPEWNTQQKLAEKMVPLLGTLYREHNVVTSIYGRSLVNRGVIDIIKAHRYARRVQEAPLSVESTYPLVEAMA
+AMDLGAATIDLAELAAKHKASGQDVQAFLDAELAEVKGKAGEGLGETQDVVLYGFGRIGRLLARILLDHAGGGSKLRLRA
+VVVRKNSEDDLIKRASLLRRDSIHGPFDGTIVVDEDRDVITANGTEIQVIYSNDPTTVDYTSYGIKDALVVDNTGRWRDD
+EGLSQHLQAKGAAKVLLTAPGKGEMKNIVFGVNSDDITPQDTIVSAASCTTNGITPVLKVIQDDYGIDHGHVETVHAYTN
+DQNLVDNFHKGARRGRAAGMNMVLTETGAAKAVAKALPELKGKLSGNAIRVPTPDVSMAILNLELTTPTSVEELNARLKQ
+ESLTGPLRGQVGYVDSPEVVSTDFVGSDRAGVVDGLATLVNNDGKNAILYVWYDNEYGYSHQVIRVVE--KMAGQQVPAF
+---------------------PQA-----------------------------------
+>KD337_NAFOICDF_01894
+MADTASTQTPEWNTQQKLAEKMVPLLGTLYREHNVVTSIYGRSLVNRGVIDIIKAHRYARRVQEAPLSVEATFPLVEAMA
+GMDLGAANIDLAELAAKQQASGQDVQAFLDAELADVTGKSGEGLGETQDVVLYGFGRIGRLLARILLDHAGGGSKLRLRA
+VVVRKNSEDDLIKRASLLRRDSIHGPFDGTIVVDEDRNVITANGTEIQVIYSNDPTTVDYTSYGIKDALVVDNTGRWRDV
+EGLSQHLQAKGATKVLLTAPGKGDMKNIVFGVNSDDILDEDTIVSAASCTTNGITPVLKVIQDEYGVQHGHVETVHAYTN
+DQNLVDNFHKGARRGRAAGMNMVITETGAAKAVAKALPELKGKLSGNAIRVPTPDVSMAIINIALEKPTSVEEINARLKQ
+ESLTGDLRGQIGYVDSPEVVSTDFVGSDRAGVVDGLATIVNNEGKNAILYVWYDNEYGYSHQVVRVVE--KMAGQQVPSF
+---------------------PKA-----------------------------------
+>SA211_MHAAABBN_00661
+MADTASTQTPEWNTQQKLAEKMVPLLGTLYREHNVVTSIYGRSLVNRGVIDIIKAHRYARRVQQAPLSVESTYPLVEAMA
+AMDLGAATIDLAELAAKQKASGQDVQAFLDAELAEVKGKAGEGLGETQDVVLYGFGRIGRLLARILLDHAGGGSKLRLRA
+VVVRKNSEDDLIKRASLLRRDSIHGPFDGTIVVDEDRDVITANGTEIQVIYSNDPTTVDYTSYGIKDALVVDNTGRWRDD
+EGLSQHLQAKGAAKVLLTAPGKGEMKNIVYGVNSDDITPQDTIISAASCTTNGITPVLKVIQDDYGIDHGHVETVHAYTN
+DQNLVDNFHKGARRGRAAGMNMVLTETGAAKAVAKALPELKGKLSGNAIRVPTPDVSMAILNLELTKPTSVGELNARLKQ
+ESLTGPLRGQVGYVDSPEVVSTDFVGSDRAGVVDGLATLVNNDGKNAILYVWYDNEYGYSHQVIRVVE--KMAGQQVPAF
+---------------------PQA-----------------------------------
+>TT9_LFPAFLNI_00891
+MADTASTQTPEWNTQQNLAEKMVPLLGTLYREHNVVTSIYGRSLVNRGVIDIIKAHRYARRVQEAPLSVESTYPLVEAMA
+AMDLGAATVDLAELAAKQKASGQDVQAFLDAELAEVKGKAGEGLGETQDVVLYGFGRIGRLLARILLDHAGGGSKLRLRA
+VVVRKNSEDDLIKRASLLRRDSIHGPFDGTIVVDEDRDVIIANGTEIQVIYSNDPTTVDYTSYGIKDALVVDNTGRWRDD
+EGLSQHLQAKGAAKVLLTAPGKGEMKNIVFGVNSDDITPEDTIVSAASCTTNGITPVLKVIQDDYGIDHGHVETVHAYTN
+DQNLVDNFHKGARRGRAAGMNMVLTETGAAKAVAKALPELKGKLSGNAIRVPTPDVSMAILNLELNTPTSVEELNARLKQ
+ESLTGPLRGQVGYVDSPEVVSTDFVGSDRAGVVDGLATLVNNDGKNAILYVWYDNEYGYSHQVIRVVE--KMAGQQVPAF
+---------------------PQA-----------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001351.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001351.fa
new file mode 100644
index 0000000000000000000000000000000000000000..55c10be4e837258b47481a2bd41dd9ccaaf81005
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001351.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02000
+M-----------------------------------------------------------
+------------------------------------------------------------
+--------------------------------------------------------LEAD
+ADARAVEAEAPDAVGQDAAAPQAPTPTGRLHHVEVWVADLAAAEAGLGWLLGELGYVLGE
+GWAEGRTYQGAGEYIVLESGPDVVGGAHERTRPGLNHLAFRAGTRARVDELTAAARERGF
+RLLFADRHPHAGGADHYAAYLEAPDGFEVELVAVED
+>KBS0714_MOLHKGIG_00939
+MSGRVLQVEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGL
+RMARDLDPEARVHVLMDSKLVVEQMSGRWKIKHDDMRRLAAEARSVLPPERVSYEWIPRN
+RNKDADRLSNEAMDAGARGEQWDAGASEVPVAAP-------AKASTTSASAVAESGLEAD
+ADVRAVEADGPDAVASPEDATPAPAPTGRLHHVEIWVADLAAAEASLGWLFGELGYVPGE
+GWAEGRTYQGAGEYLVLEAGPDVAAGAHERTRPGLNHLAFRAGSRARVDELTAAARDRGF
+RLLFEDRHPHAGGPDHYAAYLETADGFEVELVAVED
+>KD337_NAFOICDF_01897
+MAERTLQVEADGGSRGNPGVAGYGALVRDPATGDVLMTDAAPLGKASNNVAEYSGLIAGL
+EMAKTLDPDARVHVKMDSKLVVEQMSGRWKIKHEDMRRLAQQARAVLPPSRVTYEWIPRA
+QNKDADQLSNEAMDAGARGGRWDAGASKVPVTAP-------SAPTSAGAPA-------AE
+PDKEPLEEP-----PVPEERT-RPRPVGRLHHVEIWAADLDAAVESLGWLFEQVGYAPGD
+AWAEGRVYRGAGDYLVLESGRDVAPGGHDRLRPGLNHLAFRAGTRADVDRIAAQAADHGF
+TLLFEDRHPFAGGRDHYAAYLETADGFEVELVADPA
+>SA211_MHAAABBN_00658
+MSGRVLQVEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGL
+RMARDLDPEARVHVLMDSKLVVEQMSGRWKIKHDDMRRLAAEARAVLPPERVSYEWIPRN
+RNKDADRLSNEAMDAGARGGQWDAGASEVPVAAP-------AEASTTSTSAVAESGLDAD
+ADVRAVEADGPDAVASPEDATPGPAPTGRLHHVEIWVADLAAAEASLGWLFGELGYVPGE
+GWAEGRTYQGAGEYLVLEAGPDVAAGAHERTRPGLNHLAFRAGSRSRVDELTAAARGRGF
+RLLFEDRHPHAGGADHYAAYLETADGFEVELVAVED
+>TT9_LFPAFLNI_00888
+MSGRVLQVEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGL
+RMARDLDPEARVHVLMDSKLVVEQMSGRWKIKHEDMRRLAAEARSVLPPERVSYEWIPRN
+RNKDADRLSNEAMDAGARGEQWDAGASEVPVAAPAAAGSTAAEASTTSASAVAESCLDAD
+ADVRAVEADGPEAVASPGDATPAPAPTGRLHHVEIWVADLAAAEASLGWLFGELGYVPGE
+GWAEGRTYQGAGEYLVLEAGPDVAAGAHERTRPGLNHLAFRAGSRARVDELTAAARDRGF
+RLLFEDRHPHAGGPDHYAAYLETADGFEVELVAVED
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001354.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001354.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1fcb5d3978b7d30787296ef246c84023c4c3f337
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001354.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02003
+MTDSPRTEPLGASSAPADVRELTLAGGCFWCLDAVYRRVRGVLAVESGYTGGDDPAPSYE
+SVCTGTTGHAEAVRVRFDAAVVPPEVIMDLFFTGHDPTSLNRQGADVGTQYRSAVFAHDE
+AEARFFADEIARAQANYDSPIVTRVEPASAWHPAEDIHQDFYARRRSDGYCRVVIDPKLA
+KVRRNYSAWLVDA-
+>KBS0714_MOLHKGIG_00936
+MTDFPRTEPLGASGAPADVRELTLAGGCFWCLDAVYRRVRGVLAVESGYTGGDDPAPSYE
+SVCTGTTGHAEAVRVRFDAAVVPPEVIMDLFFTGHDPTSLNRQGADVGTQYRSAVFAHDE
+AEARFFADEIARAQENYDSPIVTRVEPASAWHPAEDIHQDFYARRRSNGYCRVVIDPKLA
+KVRRNYSAWLVDA-
+>KD337_NAFOICDF_01900
+MSETPETPSTPAAHAPR-VRELTLAGGCFWCLDAVYRRVRGVLAVESGYTGGHTPDPDYE
+AVCTGQTGHAEAVRVRFDEAQVPAEVIMDLFFTGHDPTSLNRQGADVGTQYRSAVFAHDE
+AEADFFRSQLARAQELYEAPIVTTIEPAAAWHPAEWYHQDFYASRPGNGYCRVVIDPKLA
+AVRRRHAAWLTDGA
+>SA211_MHAAABBN_00655
+MTDSPRTEPLGASDAPADVRELTLAGGCFWCLDAVYRRVRGVLAVESGYTGGDDPAPSYE
+SVCTGTTGHAEAVRVRFDAAVVPPEVIMDLFFTSHDPTSLNRQGADVGTQYRSAVFAHDE
+AETRFFADEIARAQANYDSPIVTRVEPASAWHPAEDIHQDFYARRRSNGYCRVVIDPKLA
+KVRRNYSAWLVDA-
+>TT9_LFPAFLNI_00885
+MTDSPRTEPLGASGAPADVRELTLAGGCFWCLDAVYRRVRGVLAVESGYTGGDDPAPSYE
+SVCTGTTGHAEAVRVRFDAAVVPPEVIMDLFFTGHDPTSLNRQGADVGTQYRSAVFAHDE
+AEARFFADEIARAQANYDSPIVTRVEPASAWHPAEDIHQDFYARRRSNGYCRVVIDPKLA
+KVRRNYSAWLVDA-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001356.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001356.fa
new file mode 100644
index 0000000000000000000000000000000000000000..aa34af432d2d985edd9289d6886529d80580f7ef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001356.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02005
+MGLLARIKEDLDNVRSHDPAARGDLEVALVYSGLHAVWAHRIAHRMWRHERLRMPARILS
+QATRAATGIEIHPGATIGRRFFIDHGMGVVIGETAEIGDDVMLYHGVTLGGRSLAKVKRH
+PTLRDGVVVGAGAKILGPVEIGAGSAVGANAVVVKDTPADAIATGIPATYRLRRSPAEGK
+PLVDPAEYVDPAMWI
+>KBS0714_MOLHKGIG_00934
+MGLFSRIKEDIATVRSHDPAARGDLEVALVYSGLHAVWAHRVAHRMWRHDRLKMPARVLS
+QVTRAATGIEIHPGASIGRRFFIDHGMGVVIGETAEIGDDVMLYHGVTLGGRSLAKVKRH
+PTLRDGVVVGAGAKILGPVEIGEGTAVGANAVVVKDTPADAIATGVPATVRPRKGPSEGK
+PLVDPAEYVDPALWI
+>KD337_NAFOICDF_01902
+MGIRSRIKEDIATVRSHDPAARGDLEVVLAYSGLHAVWSHRVAHRMWQVGRLKTPARLLS
+QAARALTGIEIHPGATIGRRLFIDHGMGVVIGETAEIGDDVMLYHGVTLGGRSLEKVKRH
+PTLRDGVVVGAGAKILGPVEIGEGTSVGANAVVVKDTPPDSIATGIPASVRLRTSPAEKK
+PLVDPAEYVDPAMWI
+>SA211_MHAAABBN_00653
+MGLFSRIKEDIATVRSHDPAARGDLEVALVYSGLHAVWAHRVAHRMWRHDRLKMPARVLS
+QVTRAATGIEIHPGASIGRRFFIDHGMGVVIGETAEIGDDVMLYHGVTLGGRSLAKVKRH
+PTLRDGVVVGAGAKILGPVEIGEGTAVGANAVVVKDTPADAIATGVPATVRPRKGPAEGK
+PLVDPAEYVDPALWI
+>TT9_LFPAFLNI_00883
+MGLFSRIKEDIATVRSHDPAARGDLEVALVYSGLHAVWAHRVAHRMWRHDRLKMPARVLS
+QVTRAATGIEIHPGASIGRRFFIDHGMGVVIGETAEIGDDVMLYHGVTLGGRSLAKVKRH
+PTLRDGVVVGAGAKILGPVEIGEGTAVGANAVVVKDTPADAIATGVPATVRPRKGPAEGK
+PLVDPAEYVDPALWI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001357.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001357.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e30a00524f490dc62de1d6b209a36bcf3699c56f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001357.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02007
+MTEQTTTVPVGAADIGVTGLAVMGANLARNFARHGYTVALHNRSHGRTDQFVAEHGDEGAFVATETLAELVQSLAVPRRV
+LIMVKAGAPVDAVIDQLVPLLDEGDIVIDAGNSHYEDTRRREAALAEKGLHFVGVGVSGGEEGALHGPAIMPGGPEKSYE
+ALGPMLEKISAQFEGEPCCAWVGTDGAGHYVKMVHNGIEYADMQVIGEAYDLLRRVGGLEPAEQAEVFTAWNQTDLASYL
+IEITAEVLAQVDAATGRPLVDVIVDEAGQKGTGRWTAISGLDVGSPVAAIAESVFARSLSSQREVRAAAREVLQAGVDEA
+AVPAVTDTDAFVEDVRQALFASKLVAYAQGMDMLAAAAEEYGWSLDLGTIASLWRDGCIIRADLLDVIMKAFGGRDTARH
+PEPGTRAEGQPLNLLFAPEFAQAIAEALPAWRRVVGTAVAAGVPVPVFSSALAYYDGLRADRLPAALVQGQRDYFGAHTY
+LRVDREGSFHTLWSGDRTEVDGEGVPVVMPQPAEGDPTQD---
+>KBS0714_MOLHKGIG_00933
+MTEQTTTVPVGAADIGVTGLAVMGANLARNFARHGYTVALHNRSRARTDQLVAEHGDEGAFVATETLAELVQSLAVPRRV
+LIMVKAGAPVDAVIDQLVPLLDEGDIVIDAGNSHFEDTRRREAALAEKGLHFVGVGVSGGEEGALHGPAIMPGGPEKSYE
+ALGPMLEKIAAQFEGEPCCAWVGTDGAGHYVKMVHNGIEYADMQVIGEAYDLLRRVGGLEPAEQAEVFTAWNQTDLASYL
+IEITAEVLAQVDAATGRPLVDVIVDEAGQKGTGRWTAISGLDVGSPVAAIAESVFARSLSSQRAVREVARETLAAGVDEE
+AQRAPQDTDAFVEDVRQALFASKLVAYAQGMDMLAAAAEEYGWSLDLGTIASLWRDGCIIRADLLDVIMQAFGGRDTSRH
+PAPGTRAPGQPLNLLFAPEFAQAIAEALPAWRRVVGTAVAAGVPVPVFSSALAYYDGLRADRLPAALVQGQRDYFGAHTY
+LRVDREGSFHTLWSGDRTEVDGEGVPVVMPQPTEGDPTQD---
+>KD337_NAFOICDF_01903
+MTETSTV--RGTADIGVTGLAVMGANLARNFARHGYTVALHNRSRAKTDALVAEHGHEGSFVATETLEELVGSLASPRRV
+LIMVKAGAPVDAVIDQLVPLLDEGDIVIDAGNSHYEDTRRREAALAEKGLHFVGVGVSGGEEGALNGPAIMPGGPEESYA
+ALGPLLEDIAASYDGEPCCAWIGTDGAGHYVKMVHNGIEYADMEVIGEAFDLLRRVAGIEPAEQAQVFDAWNQTELASYL
+IEITAEVLQQVDAATGAPLVDVIVDEAGQKGTGRWTAISGLDVGSPVAAIAESVFARSLSAQTEVRATAREVLAAGVESA
+PAVSPQDRDAFVEDVRQALFASKLVAYAQGLDMLSAAAIEYGWALDLGTIASLWRDGCIIRADLLDVIMKAFGGRDTSRH
+PEPGTRAEGQPLNLLFAPEFAQAMAEALPAWRRVVGAAVAAGVPVPVFSSALAYYDGLRADRLPAALIQGQRDFFGAHTY
+RRTDRDGSFHTLWSGDRTEVDGDGAPVVMPQPAEGDPTDETAR
+>SA211_MHAAABBN_00652
+MTEQTTTVPVGAADIGVTGLAVMGANLARNFARHGYTVALHNRSRARTDQLVAEHGDEGAFVATETLAELVQSLAVPRRV
+LIMVKAGAPVDAVIDQLVPLLDEGDIVIDAGNSHFEDTRRREAALAEKGLHFVGVGVSGGEEGALHGPAIMPGGPEKSYE
+ALGPMLEKISAQFEGEPCCAWVGTDGAGHYVKMVHNGIEYADMQVIGEAYDLLRRVGGLEPAEQAEVFTAWNQTDLASYL
+IEITAEVLAQVDAATGRPLVDVIVDEAGQKGTGRWTAISGLDVGSPVAAIAESVFARSLSSQRAVRQVARETLAAGVDEE
+AQRAPQDTDTFVEDVRQALFASKLVAYAQGMDMLAAAAEEYGWSLDLGTIASLWRDGCIIRADLLDVIMQAFGGRDTSRH
+PAPGTRAPGQPLNLLFAPEFAQAIAEALPAWRRVVGTAVAAGVPVPVFSSALAYYDGLRADRLPAALVQGQRDFFGAHTY
+LRVDREGSFHTLWSGDRTEVDGEGVPVVMPQPTEGDPTQD---
+>TT9_LFPAFLNI_00882
+MTEQTTTVPVGAADIGVTGLAVMGANLARNFARHGYTVALHNRSRARTDQLVAEHGDEGAFVATETLAELVQSLAVPRRV
+LIMVKAGAPVDAVIDQLVPLLEEGDIVIDAGNSHYEDTRRREAALAEKGLHFVGVGVSGGEEGALHGPAIMPGGPEKSYE
+ALGPMLEKISAQFEGEPCCAWVGTDGAGHYVKMVHNGIEYADMQVIGEAYDLLRRVGGLEPAEQAEVFTAWNQTDLASYL
+IEITAEVLAQVDAATGRPLVDVIVDEAGQKGTGRWTAISGLDVGSPVAAIAESVFARSLSSQRAVREVARETLAAGIDED
+AQRVPQDTDAFVEDVRQALFASKLVAYAQGMDMLAAAAEEYGWSLDLGTIASLWRDGCIIRADLLDVIMQAFGGRDTSRH
+PAPGTRAPGQPLNLLFAPEFAQAIAEALPAWRRVVGTAVASGVPVPVFSSALAYYDGLRADRLPAALVQGQRDYFGAHTY
+LRVDREGSFHTLWSGDRTEVDGEGVPVVMPQPTEGDPTQD---
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001362.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001362.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ed4d6b3602d5a0b02738469643231c6ad1b3425b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001362.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02012
+M---NAPSLQPSPYPAPPPSRGAEVRAGVRLSLAAGLGLFPLGVAFGMLVVQAGLPAWVA
+PLFSVVVFAGSVELLLVSLAVAATPLLTIAVTVFLVNFRHVFYAFSFPLRVVRHPLARLY
+SMGALIDEAYAIAAAHPRGWTAPRLIALQVALHAYWVLGGLAGVAVAWLLPGPVEGLEFA
+LVALFIVLALDAARTRAQAPLVLAAALAVGVGLLVAPGQLLVAAFAVYAAVLIALHVLAR
+RGVDLPLPAPTPATGPVPVVAG----------PAPGEEPR
+>KBS0714_MOLHKGIG_00928
+MLTIMS-SSTESLRAPVTPSRWAEVRSGVAVTLGAGLGLFPLGMAFGMLVVQAGLPAWVA
+PLFSVVVFAGSVELLLVSLVVAGTPLLTIAVTVFLVNFRHVFYAFSFPLRVVRGRFARIY
+SMGALIDEAYAIAAARPRGWTGPRLVAMQVALHAYWVLGGLAGVAVAWLLPGPVEGLEFA
+LVALFIVLAMDAARTRAQLPLVLAAAVAVGVALLLAPAQVLVVAFALYAAVLIAFHVLAA
+RGTALPLPEPVPVTGPVPVVAATGERAGTDAEPGAGEDPR
+>KD337_NAFOICDF_01911
+MTEITPPSPAASGVPDALPTRRAEVAEGVRLSGPAGLGLFPLGVAFGMLVVQAGLPGWAA
+PLLSVVVFAGSVELLLVSLLAAGTSLAGIAVTVFLLNFRHVFYAFGFPLRVVRNPLARLY
+SMGGLIDEAYAITAAHPRGWTAPRLLATQVSLHLYWVVGGLVGVVAAGLLPAPVEGLEFA
+LTALFIVLALDAARTRRHVLLVLAAAAAVGVGLVVAPSALLVASFLGFVAALMAAHVAAE
+RGARLPLPAVKELGATSPGAAEAAELTTVDAEAG-----R
+>SA211_MHAAABBN_00647
+MLTIMG-SSSASSRASAPPSRWAEVRSGVAVTLGAGLGLFPLGVAFGMLVVQAGLPAWVA
+PLFSVVVFAGSVELLLVSLVVAGTPLLTIAVTVFLVNFRHVFYAFSFPLRVVRGRLARIY
+SMGALIDEAYAIAAAQPRGWTAPRLLAMQIALHAYWVLGGLAGVAVAWLLPVPVEGLEFA
+LVALFIVLAMDAARTRAQLPLVLAAAVAVGVALLLAPAQVLVVAFALYAAVLIAFHVLAA
+RGTALPLPEPVPVTGPVPVVAAAGERAVTDAEPGVEEDPR
+>TT9_LFPAFLNI_00876
+MLTIMG-SSSASSRASAPPSRWAEVRSGVAVTLGAGLGLFPLGMAFGMLVVQAGLPAWVA
+PLFSVVVFAGSVELLLVPLVVAGTPLLTIAVTVFLVNFRHVFYAFSFPLRVVRGRLARIY
+SMGALIDEAYAIAAARPRGWTGPRLVAMQVALQAYWVLGGLAGVAVAWLLPGPVEGLEFA
+LVALFIVLAMDAARTRAQLPLVLAAAVAVGVALLLAPAQVLVVAFALYAAVLIAFHVLAA
+RGTALPLPEPVPVTGPVPVVAATGERAGTDAEPGAGEDPR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001363.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001363.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5915dda6f777780c169b253bf9743f850ddbffb6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001363.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02015
+MAEEPGA-------VPALRDDRGQDWPWPPTRGPEDAAAPRATWLVLLPGAFTPVCTGEL
+GWLGELATDLAADDVAVRVIACDAAPVLRRVREELGLPEDLVLLSDFWPHGAACAALDAF
+DAASGRARRVSVLLDADGVEVSRV-TAAPGRPRSRTEHEAATRALLGDR-
+>KBS0714_MOLHKGIG_00926
+MAEPPSGGTRGADVVPALRDDHGQTWPWPPTRGPQDAAGPRGTWLVFLPGAFTPVCTDEL
+GWIGALAEDVAVDDVAVRVVSCDAAPVLRRVREELALPEPLTLLSDFWPHGAACRALDVF
+DVETGRPRRVSVLLDADGVEAARV-VAAPGQARTRSEHEAATRDLLADR-
+>KD337_NAFOICDF_01914
+MAE------------PALRDIHGTPWPWPPV-----VSGERAAWLVFLPGAFTPVCAGEL
+AWLGPLAVELAAEDVGLRVVSCDAAPVLREVADRTGLPAECVLLSDFWPHGAAAARFGLL
+DETTGRPRRVSVLVDESGTELVRVRPGEPGGPRTAQAHRRAAEGALGRRR
+>SA211_MHAAABBN_00645
+MAEPPSGGTRGADVVPALRDDHGQTWPWPPTRGPQDAAGPRGTWLVFLPGAFTPVCTDEL
+GWIGALAEDVAVDEVAVRVVSCDAAPVLRRVREELALPEPLTLLSDFWPHGAACRALDVF
+DAETGRPRRVSVLLDADGVEAARV-VAAPGQARTRGEHEAATRDLLVDR-
+>TT9_LFPAFLNI_00874
+MAEPPSGGTRGADVVPALRDDHGQTWPWPPTRGPQDAAGPRGTWLVFLPGAFTPVCTDEL
+GWIGALAEDVAVDDVAVRVVSCDAAPVLRRVREELALPEPLTLLSDFWPHGAACRALDVF
+DVETGRPRRVSVLLDADGVEAARV-VAAPGQARTRSEHEAATRDLLADR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001366.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001366.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0410b555d483f3c718aa7a5c7063c3392743b7bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001366.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02018
+MPEPRSAASRPVSTEGRARLRSHLGALNTAVLQRLDATLPWYRGLTPDERSALGLVAQRA
+LQGFISWFDRP-KTTGHVLQDVFGPAPTDLTRAISLQRALQLIRTMVDVVETRVPELLAE
+RDQAPIREHVLHYSREVAFALADVYARAAEMRGAMDSRLEAVLLDAVLRGQDPDEIRHRA
+TALGWRGDHRVMVMAGLAPGQDQPAFIPGLRRAAAKLDCDLLVGVQAERLVLVIGSVTDA
+QVVGEALTPWFAPGPVILGPVVDSLVEAHVSARHTLAGLGAAPAHPRAIRPTPAEDLLPE
+RALLGDPTACEALVEGVYAPLADAGTALLDTVDAYGALGHSLEGTARELFVHANTVRYRL
+KRVAEVTGWDPLVPRDAYVLQTAVTLGRLAGSRPGVAEASA
+>KBS0714_MOLHKGIG_00923
+MPEPRPAAPRPVSTDGLARLRSHLGALNTAVLQRLDATLPWYRRLTPDERSALGLVAQRA
+LQGFLTWFERP-TSTGHVLQDVFGPAPTDLTRAISLQRALQLIRTMVDVVETRVPELLAE
+RDQAPVREHILHYSREVAFALADVYARAAEMRGAMDSRLESVLLDAVLRGQDPDEIRHRA
+TALGWRGDHDVMVMAGLAPGQDKPAFIPDLRRAAARLDCDLLVGVQSERLVLVVGSVRDA
+RAVGEALAPWFAPGPVIVGPVVDSLVSAHVSARHTLAGLSAAAAHPRASRPTPAEDLLPE
+RALLGDPTAREALVDGVFTPLADAGTSLLETVDAYGALGHSLEGTARELFVHANTVRYRL
+KRVAEVTGWDPLVPRDAYVLQTAITLGRLAGARPTTGTGSD
+>KD337_NAFOICDF_01917
+MPAPRPSAPRRVSADGLARLRAHLGTFNTATLRRLDETLPWYRELTPDERSALGLIAQRA
+LQGFITSFERPQTTTVDVLRDVFGQSPTELTRAISLHRALQLIRTIVDVVETGVPDAVSE
+ADQPVVAEHVLHYSREIAFAIADVYARAAELRGAMDSRLEAVLLDAVLRGQEPDEIQHRA
+TAFGWRGGDGVMVMAGSARDGATAAFLPGLRRDAARLQCELLVGVQSRRLVLVVGSVSDP
+DAVAEALLPWFADGPVIVGPVVDSLLEAHVSAHHALAGLGAAAAHPRAGRPARSDDLLPE
+RALAGDATACAALVDGVYAALADAGPSLLETVDVYTACGHSLEGTARELYVHANTVRYRL
+RRAAEVTGWDPQRPRDAYVLQTAVALGRLSEGAPRL-----
+>SA211_MHAAABBN_00642
+MPEPRPAAPRPVSTDGLARLRSHLGALNTAVLQRLDATLPWYRRLTPDERSALGLVAQRA
+LQGFLTWFERP-TSTGHVLQDVFGPAPTDLTRAISLQRALQLIRTMVDVVETRVPELLAE
+RDQAPVREHILHYSREVAFALADVYARAAEMRGAMDSRLESVLLDAVLRGQDPDEIRHRA
+TALGWRGDHDVMVMAGLAPGQDKPAFIPDLRRAAARLDCDLLVGVQSERLVLVVGSVRDA
+RAVGEALAPWFAPGPVIVGPVVDSLVSVHVSARHTLAGLSAAAAHPRASRPTPAEDLLPE
+RALLGDPTAREALVDGVFTPLADAGTSLLETVDAYGALGHSLEGTARELFVHANTVRYRL
+KRVAEVTGWDPLVPRDAYVLQTAITLGRLAGARPTTGAGSD
+>TT9_LFPAFLNI_00871
+MPEPRPAAPRPVSTDGLARLRSHLGALNTAVLQRLDATLPWYRRLTPDERSALGLVAQRA
+LQGFLTWFERP-TSTGHVLQDVFGPAPTDLTRAISLHRALQLIRTMVDVVETRVPELLAE
+RDQAPVREHILHYSREVAFALADVYARAAEMRGAMDSRLESVLLDAVLRGQDPDEIRHRA
+TALGWRGDHDVMVMAGLAPGQDKPAFIPDLRRAAARLDCDLLVGVQSERLVLVVGSVRDA
+RAVGEALARWFAPGPVIVGPVVDSLISAHVSARHTLAGLSAAAAHPRACRPTPAEDLLPE
+RALLGDPTAREALVDGVFTPLADAGTSLLETVDAYGALGHSLEGTARELFVHANTVRYRL
+KRVAEVTGWDPLVPRDAYVLQTAITLGRLAGARPTTGTGSD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001374.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001374.fa
new file mode 100644
index 0000000000000000000000000000000000000000..13f5efd35dad435c48dcd184a4a2d85260a97d9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001374.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02027
+MSGIGRTRSISLSGLRGEVVHVEADIAQSLPGFTLLGLPDQALQESRDRIRSAARNAGLPLTRRHLTVNLLPAGVHKRGA
+GHDLAIVLAAYAADGRVRGVEGPVFLAELGLDGALHRSPETVAMVMASVDAGCSEVVVAEDAEAEARLVPGAEVRGFAHL
+HDVILAFGGEPEG-----EAPQRRPVRPADDDGAPGLGPGAPDLSEVAGQAEARFALEVAAAGAHHLLLRGAPGAGKTML
+AERLPGILPPLDRRTALECAALRSLRGADALARRGVGQGSAGTRAAGDLDRTPPFEAPHHSASMAALVGGGANLARPGAV
+SLAHGGVLFLDEAPEFERRALESLRQPLESGEVLLHRARGTVAYPARFQLVLAANPCPCGKGGGNGVECRCSVTERRRYG
+QRLSGPLLDRVDLQVTVRPVQARQLAGAPAAETSAQVAARVAEAARRQAERWARAAEEGLVAPGLRRNAHAPAGVLRHGP
+YAVPRAARRAADEAVDHGLLSARGHARVLRLAWTLADLRGAETPAPEDTDVALTLRHQEEDET
+>KBS0714_MOLHKGIG_00915
+MSGIGRTRSITLAGLRGEVVHVEADIAQSLPGFTLLGLPDQALQESRDRIRSAARNAGLPLTRRHLTVNLLPAGVHKRGA
+CHDLAIVLAAYAADGRVRNVEGPVFLAELGLDGALHRSPETVAMVMAAVDAGCSEVVVAEDAEAEARLVPGAEVRGFAHL
+HDVIRAFGGEPDG-----EPPH-RPARRQVTAPEPEPTRAVPDLAEVAGQAEARFALEVAAAGAHHLLLMGAPGAGKTML
+AERLPGILPPLDRRTALECAALRSLRGGDARVRR---RGGTSQGFDGEIDRTPPFEAPHHSASRSALVGGGSGLARPGAA
+SLAHGGVLFLDEAPEFERRTLEALRQPLESGEVLLHRALGAVVYPARFQLVLAANPCPCGKGGGTGVECRCSVPERRRYA
+QRLSGPLLDRVDLQVTVRPVEARQLTGAPASETTSQVAVRVAAAADRQARRWATAAERGVVPPGLRRNAHVPAGVLRHGP
+YAVPRAARRPADDAVDQGLLSARGHARVLRLAWTLADLRGAERPAPEDTDVALTLRHQNEEDA
+>KD337_NAFOICDF_01925
+MSGIGRTRSISLTGLRGTVVDVEADIAQSLPGFTLLGLPDQALQESRDRIRSAARNAGLPLTRRHLTVNLLPAGVHKRGA
+AHDLAIVLAAYAADGRVQGVDGPVFLAELGLDGTLHRAPETVAMVMAAVDAGHDRVVVAADAVAEAELVPGARVRGFAHL
+HEAILAFGGRPDASVARPSGPS-GTAGRGPAAGQEGPSGPVPDLAEVAGQAEARFALEVAAAGGHHLLLSGPPGAGKTML
+AERLPGILPPLDDRTALETAALRSLRGLEPSAR--------------GLRRTPPFEAPHHSASMAALVGGGTGLGRPGAV
+SLAHGGVLFLDEAPEFERRALDALRQPLESGEMIVHRAHGSVAYPARFQLVLAANPCPCGFGSGTGAHCRCTSLQRRKYA
+ARLSGPLLDRVDVQVSVRPVRADQLAAAPEAEPSRAVAARVAAAVAAQDARWAAAAREGSLPPGVCRNAHVPAALLRSGR
+FAVPPEARATADRAVDRGELSARGHGRVLRLAWTLADLRGASCPEAQDVEIALQLRIRSEEDR
+>SA211_MHAAABBN_00634
+MSGIGRTRSITLAGLRGEVVHVEADIAQSLPGFTLLGLPDQALQESRDRIRSAARNAGLPLTRRHLTVNLLPAGVHKRGA
+CHDLAIVLAAYAADGRVRNVEGPVFLAELGLDGALHRSPETVAMVMAAVDAGCSEVVVAEDAEAEARLVPGAEVRGFAHL
+HDVIRAFGGEPDG-----EPPH-RPARRQVTAPEPEPARAVPDLAEVAGQAEARFALEVAAAGAHHLLLMGAPGAGKTML
+AERLPGILPPLDRRTALECAALRSLRGGDARVRR---RGGTAQGFDGDIDRTPPFEAPHHSASRSALVGGGSGLARPGAA
+SLAHGGVLFLDEAPEFERRTLEALRQPLESGEVLLHRALGAVVYPARFQLVLAANPCPCGKGGGTGVECRCSVPERRRYA
+QRLSGPLLDRVDLQVTVRPVEARQLTGAPASETTSQVAARVAAAADRQARRWATAAERGLAPSGLRRNAHVPAGVLRHGP
+YAVPRAARRPADDAVDQGLLSARGHARVLRLAWTLADLRGAERPAPEDTDVALTLRHQNEEDA
+>TT9_LFPAFLNI_00863
+MSGIGRTRSITLAGLRGEVVHVEADIAQSLPGFTLLGLPDQALQESRDRIRSAARNAGLPLTRRHLTVNLLPAGVHKRGA
+CHDLAIVLAAYAADGRVRNVEGPVFLAELGLDGALHRSPETVAMVMAAVDAGCSEVVVAEDAEAEARLVPGAEVRGFAHL
+HDVIRAFGGEPDG-----EPPH-RPARRQVTAPEPEPTRAVPDLAEVAGQAEARFALEVAAAGAHHLLLMGAPGAGKTML
+AERLPGILPPLDRRTALECAALRSLRGGDARVRR---RGGTSQGFDGEIDRTPPFEAPHHSASRSALVGGGSGLARPGAA
+SLAHGGVLFLDEAPEFERRTLEALRQPLESGEVLLHRALGAVVYPARFQLVLAANPCPCGKGGGTGVECRCSVPERRRYA
+QRLSGPLLDRVDLQVTVRPVEARQLTGAPASETTSQVAVRVAAAADRQARRWATAAERGVVPPGLRRNAHVPAGVLRHGP
+YAVPRAARRPADDAVDQGLLSARGHARVLRLAWTLADLRGAERPAPEDTDVALTLRHQNEEDA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001375.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001375.fa
new file mode 100644
index 0000000000000000000000000000000000000000..38567c06feb9c75f368070e45e91f549dcd5ab37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001375.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02028
+M----TGTAEKVGADSPGGGRGSRAHTALGRFGEDAAARWLADRGYVIADRNWRGEAGEL
+DLVAHHAGWWVGVEVKTRSGLAFGDPLESIDRRKLLRLHRLTAAWVR--AHGEGR--RAE
+RWRVDAVAVLVPRTGGIRFDLLQDVRP
+>KBS0714_MOLHKGIG_00914
+M----TGTAEQVGAQPPGERRASRAHTALGRFGEDAAARWLAERGYVIADRNWRGEAGEL
+DIVAHHAGWWVGVEVKTRSGLAFGDPFESIDRRKLTRLHRLTAAWVR--AHAADR--RGT
+PWRVDAVAVLVPRTGGIRFDLLQDVRP
+>KD337_NAFOICDF_01926
+MVPLDTTTT------TPAARRGSTAHTALGRYGEDAAARWLAERGYQIVARNWRGEDGEL
+DLVARHGPWWVGVEVKTRSGLAYGDPLEAIGRRKLLRLHRLTAAWVREAAAREGRPLRSQ
+QWRVDAVAVLVPRTGGVHFDLVQDVRP
+>SA211_MHAAABBN_00633
+M----TGTAERIGAQPPGDRRASRAHTALGRFGEDAAARWLAERGYVIADRNWRGEAGEL
+DIVAHHAGWWVGVEVKTRSGLAFGDPFESIDRRKLTRLHRLTAAWVR--AHAADR--RGT
+PWRVDAVAVLVPRTGGIRFDLLQDVRP
+>TT9_LFPAFLNI_00862
+M----TGTAEQVGAQPPGERRASRAHTALGRFGEDAAARWLAERGYVIADRNWRGEAGEL
+DIVAHHAGWWVGVEVKTRSGLAFGDPFESIDRRKLTRLHRLTAAWVR--AHAADR--RGT
+PWRVDAVAVLVPRTGGIRFDLLQDVRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001376.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001376.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c96f4d5023a2494641c1be25aa8d76c4245ba6e1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001376.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02029
+MSTDDVEDFEAEAELLLYREYRDVVGLFRYVVETERRFYLANDVRLTPRQSDGDVFFEIL
+LEDAWVWDVYRTQRFIKRVKVLTFKDVNIEELPRDELQVPPDGQLPD----
+>KBS0714_MOLHKGIG_00913
+MSADDVEDFEAEAELLLYREYRDVVGLFRYVVETERRFYLANDVRLTPRQADGDVFFEIL
+LEDAWVWDVYRTQRFIKRVKVLTFKDVNIEELPTEDLTVPPDGQLPS----
+>KD337_NAFOICDF_01927
+MSTDDVEDFEAEAELLLYREYRDVVGLFRYVVETERRFYLANAVTLTPHQTDGEVFFELT
+LEDAWVWDVYRTARFIRRVRVLTFKDVNIEELPRDELQVPEDGGLRGDLGR
+>SA211_MHAAABBN_00632
+MSADDVEDFEAEAELLLYREYRDVVGLFRYVVETERRFYLANDVRLTPRQADGDVFFEIL
+LEDAWVWDVYRTQRFIKRVKVLTFKDVNIEELPTEDLTVPPDGQLPS----
+>TT9_LFPAFLNI_00861
+MSADDVEDFEAEAELLLYREYRDVVGLFRYVVETERRFYLANDVRLTPRQADGDVFFEIL
+LEDAWVWDVYRTQRFIKRVKVLTFKDVNIEELPTEDLTVPPDGQLPS----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001377.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001377.fa
new file mode 100644
index 0000000000000000000000000000000000000000..988c05a9ce95eb90aa315c038e10074183b25566
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001377.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02030
+MTGSERAPRAGARTAVRAGLDVEAGLAAPFLAAGGTDRVLVAGMDEVGRGALAGPVVVGV
+CAAWLPAEGEIPAVRDSKALTDRRRRALVPEIRAWAAAVALGEANPAEIDALGISAALGL
+AGRRAWAAVCAAAGQEPVALVLDGRDDWLTRSDPDAGPAPAPRPVPPVPTMLVKAEDRCA
+TVAAASIAAKVARDDTMIALHADHPAYGWAGNKGYGAAAHRAAILDHGAGEHHRRSWSLG
+LPAAPADEPPTLFD
+>KBS0714_MOLHKGIG_00912
+MT----ARRGGGRPTVRAGLDVEAGLAAPALAARGADRVLVAGMDEVGRGALAGPVVVGV
+CAAWLPAAGQIPPVRDSKALTDRRRRALVPQIEDWAAGVALGEAGPAEIDALGISAALGL
+AGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPRPLPPEPTMLVRAEDRCA
+TVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAALAERGASEQHRRSWNLG
+LPGAPAQAPPTLFD
+>KD337_NAFOICDF_01928
+MS--PRP------PVVRAGLDVEASLAEAAIGPGAS--ALVAGMDEVGRGALAGPVTVGV
+CAARVPALGVVPAVRDSKALTDRRRRALASEIEAWAAGVVLGEASPAEIDRLGITRALAL
+AGCRAWAGLLAALGEEPVALILDGSDDWLRHARGGGMDDVVTGPVPPAPHMMVKAEDRCA
+TVAAASIAAKVGRDDAMIALSAAHPAYGWAGNKGYGAAAHRSALVELGVTEHHRRSWNLG
+VPGTGAE-PDVLF-
+>SA211_MHAAABBN_00631
+MT----ARRGGGRPTVRAGLDVEAGLAAPALAARGADRVLVAGMDEVGRGALAGPVVVGV
+CAAWLPAAGQIPPVRDSKALTDRRRRALVPQIEDWAAGVALGEAGPAEIDALGISAALGL
+AGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPRPLPPEPTMLVRAEDRCA
+TVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAALAERGASEQHRRSWNLG
+LPGAPAQAPPTLFD
+>TT9_LFPAFLNI_00860
+MT----ARRGGGRPTVRAGLDVEAGLAAPALAARGADRVLVAGMDEVGRGALAGPVVVGV
+CAAWLPAAGQIPPVRDSKALTDRRRRALVPQIEDWAAGVALGEAGPAEIDALGISAALGL
+AGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPRPLPPEPTMLVRAEDRCA
+TVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAALAERGASEQHRRSWNLG
+LPGAPAQAPPTLFD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001378.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001378.fa
new file mode 100644
index 0000000000000000000000000000000000000000..33c36bbc970682b5c16cee502205eb7936ded7c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001378.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02031
+MSRPDHRLVPPAAGHAHDSGAAPADDAARPAGPTGALLGHAVPSGAGSQALPAEPGRGPL
+RAVLAVVVLTVLACVLAWAFLARMYAIPSSSMEPGLRAGDRVVATLLTPEPYPVRRGDVV
+VFDDTKGWLADG---------------------GHVIKRVVGLPGDTVSFTPGEAALRVN
+GVPVAEPYLAPGDAPAQDAFEATVPAGRLWVLGDHRSASADSRAHRDGPGGGFVSLDDVV
+GRARFVVWPLDRIGGAGAAPEAFEAVPDARG--AGS
+>KBS0714_MOLHKGIG_00911
+MT-----------------------------------------------------GR---
+RTALIAAAVTVLACVLAWAFLARMYAIPSSSMEPGLRAGDRVVATLLTPDPFPVRRGDVV
+VFEDTKGWLPGG---------------------GHVIKRAVGLPGDIVSWTPGEETLRVN
+GVPVEEPYLAPGETPAQEAFEVTVPAGRLWVLGDHRSASADSRAHRAGPGGGFVALDDVV
+GRARFVVWPLDRIGGAGTDPDAFATVPDAPAPEART
+>KD337_NAFOICDF_01929
+MAE-------------------------APVTPAAA--GTADPAAAPAAEH---PGH-PL
+RAAAVTVAVTLALLLAVQLLLVRMFAIPSASMEPTLRPGDRVAVDLLVPGPLELRRGDVV
+VFRDARGWLAGAEAVHADPLHAAVAALGLGTQEGHLVKRVVGLPGDRVRWSPEDARLEVN
+GVPVDEPYVA--GPAAQEAFDVVVPDGGLWVLGDHRSASQDSRQHQHGPGGGMVSVDDVV
+GRVEGVVWPLDRAGAVGPGPLA--KLP---------
+>SA211_MHAAABBN_00630
+MT-----------------------------------------------------GR---
+RTALIAAAVTVLACVLAWAFLARMYAIPSSSMEPGLRAGDRVVATLLTPDPFPVRRGDVV
+VFEDTKGWLPGG---------------------GHVIKRAVGLPGDIVSWTPGEETLRVN
+GVPVEEPYLAPGETPAQEAFEVTVPAGRLWVLGDHRSASADSRAHRAGPGGGFVALDDVV
+GRARFVVWPLDRIGGAGTDPDAFATVPDAPAPEART
+>TT9_LFPAFLNI_00859
+MT-----------------------------------------------------GR---
+RTALIAAAVTVLACVLAWAFLARMYAIPSSSMEPGLRAGDRVVATLLTPDPFPVRRGDVV
+VFEDTKGWLPGG---------------------GHVIKRAVGLPGDIVSWTPGEETLRVN
+GVPVEEPYLAPGETPAQEAFEVTVPAGRLWVLGDHRSASADSRAHRAGPGGGFVALDDVV
+GRARFVVWPLDRIGGAGTDPDAFATVPDAPAPEART
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001379.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001379.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ab4aec684191aedd83f1ddadd1dcefd3873cafb9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001379.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02032
+MSHPEPRDPRRSRGSAVSRSVAPGSGRGTTPARGSGGTAWWAWIGLTVAAAVGAAAVLRA
+LTGPVYLIPSGSMEPTLHPGDRVRVDASAAGGEGVRRGDVVVFDGAGSLAPYRSVGSLER
+GLEDVARSWGLGASGDAFVKRVLALPGDRLECCAPDGRLLRDGAPVDEPYLGRPVTAQDP
+AADGSWTFEVPEGRMVVLGDNRSASRDSRALLGGAGGGLIPLKRVEGRAAEVVWPLDRRG
+PVDASAPEAAPGAAP
+>KBS0714_MOLHKGIG_00910
+MRTSEPRDPRRSRGSVAS---GAGSSPGTTAAPASGASRWWAWLGLTVVAAVVVAAVLRA
+LTGPVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLHHGDVVVFDGAGSLAPYRSAGSLER
+GLEDVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLREGEPLDEPYLGRPVTADEP
+AAAGTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLSRRG
+TVDAPSGDT-----P
+>KD337_NAFOICDF_01930
+MRAQEPRDRNRSRGSRAS---GEAGRP------------WWALVLLTLAGAVVAAALLRA
+FTGPVYLVPSGSMEPTLLPGDRVHVDTAAADGAGLEHGDVVVFDGAGSLAPYRSRTALDR
+GLEDVAAFWGVGAAQDVYVKRVLALPGDTLSCCTADGRLERNGAPLDESYLGRTVDAAAP
+ASRSTWAFEVPEGRMVVLGDNRDVSRDSRALLGAPGGGLIPVEKVIGRVDSVAWPLDRRG
+DVPAGAQDGSRG---
+>SA211_MHAAABBN_00629
+MRTSEPRDPRRSRGSVAS---GAGSSSGPTAAPASGTSRWWAWLGLTVVAAVVVAAVLRA
+LTGPVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLHHGDVVVFDGAGSLAPYRSAGSLER
+GLEDVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLRNGEPLDEPYLGRPVTADEP
+AAAGTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLSRRG
+TMDAPSGDT-----P
+>TT9_LFPAFLNI_00858
+MRTSEPRDPRRSRGSVAS---GAGSSSGPTAAPASGTSRWWAWLGLTVVAAVVVAAVLRA
+LTGPVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLQRGDVVVFDGAGSLAPYRSAGSLER
+GLEDVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLREGEPLDEPYLGRPVTADEP
+AAAGTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLSRRG
+TVDAPSGDT-----P
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001382.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001382.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ea03739b680895cda3e482bdd8d9a8257dc9d8cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001382.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02035
+MSPAPQ----DGLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGATLTVRDGGPSLPAE
+LTVTRARWNKQILVVGFEQSPDRNTAETLRGAQLFAAPAAPEESDEWYEDDLVDLEVRVD
+GRRVGVVTALTTGAVQDLLHVALDGVDEEALVPFVEEIVPEIDPEAGVLVLTPPPGLLEL
+ASGEAEQDDDAAASDAEADADAGREG
+>KBS0714_MOLHKGIG_00907
+MSPAAQ----DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAE
+LTVTRARWNKQILVVGFEESPDRNVAETLRGAQLFAVPAAPEESDEWYEEDLVDLEVRVD
+GERVGVVTALTTGAVQDLLHVALDGVEEEALVPFVEEIVPEIDPEAGVLVLTPPPGLLEL
+ATGE-----DEGAADGPTDADA--ED
+>KD337_NAFOICDF_01933
+MSPAPQPAETEGQVRVARIGKPHGIRGEVTVQLFTDDPEARFAADSRLEVRQGPPGAPAA
+LTVTRARWNKAILVVGFAEVPDRNAAEALRGAQLYAAPLEKVEDDAWYEDDLLDLEVHVD
+GARVGVVTGLLTGTVQDLLQVRLDATGDDALVPFVEEIVPEVDQEAGVVVVAPPPGLLEL
+ASET-----TAG------------EG
+>SA211_MHAAABBN_00626
+MSPAAQ----DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAE
+LTVTRARWNKQILVVGFAESPDRNVAETLRGAQLFAVPAVPEESDEWYEEDLVDLEVRVE
+GERVGVVTALTTGAVQDLLHVALDGVEEEALVPFVEEIVPEIDSEAGVLVLTPPPGLLEL
+ATGE-----DEGAVDGPADADA--ED
+>TT9_LFPAFLNI_00855
+MSPAAQ----DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAE
+LTVTRARWNKQILVVGFAESPDRNVAETLRGAQLFAVPAAPEESDEWYEEDLVDLEVRVE
+GERVGVVTALTTGAVQDLLHVALDGVEEEALVPFVEEIVPEIDSEAGVLVLTPPPGLLEL
+ATGE-----DEDAADGPADADA--ED
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001384.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001384.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d8061541d5701e24e109dec9f91a8de9c921d63b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001384.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02037
+MAVKIRLKRFGKIRAPYYRIVVADSRTRRDGRAIEEIGKYHPTEEPSYIEVDSERAQYWL
+SVGAQPTEQVAALLKITGDWQKFKGESGAEGTLKSKSEKEAFVAPEKGSVILPEEPKAEE
+PKAKESAEAETPAEEA--PEAPAEDAEKSE
+>KBS0714_MOLHKGIG_00905
+MAVKIRLKRFGKIRAPFYRVVVMDSRTRRDGRAIEEIGKYHPTEEPSFIEIDSERAQYWL
+SVGAQPTEQVAALLKVTGDWQKFKGESGAEGTLKSKSEKEAFVAPEKGSVILPEEPKQEE
+APAESEQAAEAP---A--AEAPAEDAEKSE
+>KD337_NAFOICDF_01935
+MAVKIRLKRFGKIRAPYYRVVVMDSRTRRDGRAIEEIGKYHPTEEPSFIEIDSERAQYWL
+SVGAQPTEQVAALLKITGDWQKFKGEAGAEGTLKTKGEKEAFVAPAKESVILPEEPKQEE
+APAESAE-AEAPVEEAADAEAPAEDAEKAE
+>SA211_MHAAABBN_00624
+MAVKIRLKRFGKIRAPFYRVVVMDSRTRRDGRAIEEIGKYHPTEEPSFIEIDSERAQYWL
+SVGAQPTEQVAALLKVTGDWQKFKGESGAEGTLKSKSEKEAFVAPEKGSVILPEEPKQEE
+APAESEQAAEAPAEEA--AEAPAEDAEKSE
+>TT9_LFPAFLNI_00853
+MAVKIRLKRFGKIRAPFYRVVVMDSRTRRDGRAIEEIGKYHPTEEPSFIEIDSERAQYWL
+SVGAQPTEQVAALLKVTGDWQKFKGESGAEGTLKSKSEKEAFVAPEKGSVILPEEPKQEE
+APAESEQAAEAPAEEA--AEAPAEDAEKSE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001386.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001386.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5d8885a3bdcef11037b22358f9c6267e7d12703a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001386.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02039
+MNEMT-LDAGTVWMVVSAGLVLLMTPGLALFYGGMTRSKSALNMMMMSFVSMGLVGVVWI
+LWVSGMTGGEGWLGLVGSPLADPGLTTAMEEGGLIAAGFGATFAIITVALISGAVADRAR
+FLTWCVFVPVWVTLVYAPLAYMVWGGGLLAEEGAIGSRLGEALDFAGGLVVHISAGVAAL
+VLALMMGKRKGFGVDPGHKPHNVPFTMLGAALLWFGWFGFNGGAAGDTGQLGLIWINTLA
+AAAAGMLGWVVVEWVRRGRPTSIGTASGIVAGLVGITPACAFVSPLGALVIGVASGAASA
+LAVNLKYRLGFDDSLDVVGVHLTAGILGTVLIGFFALPSEGPAGLFYGGDGRLLLAQTVA
+VVVAVVFTAVLTFLIALVLKATLGLRVSEEDEERGVDLTLHDESAYHYDVGFGGVPVPAD
+AQAHRGGAAG
+>KBS0714_MOLHKGIG_00903
+MNEMT-LDAGTVWMVVSAGLVLLMTPGLALFYGGMTRSKSALNMMMMSFVSMGLVGVVWI
+LWVSGMTGGEGWLGLVGSPLADPGLTTAMEEGGLIAAGFGATFAIITVALISGAVADRAR
+FLTWCVFVPVWVTLVYAPLAYMVWGGGLLAEEGAIGSRLGEALDFAGGLVVHISAGVAAL
+VLALMMGKRKGFGVDPGHKPHNVPFTMLGAALLWFGWFGFNGGAAGDTGQLGLIWINTLA
+AAAAGMLGWVVVEWVRRGRPTSIGTASGIVAGLVGITPACAFVSPLGALVIGVASGAASA
+LAVNLKYRLGFDDSLDVVGVHLTAGILGTVLIGFFALPSEGPAGLFYGGDGRLLLAQTVA
+VVVAVVFTAVLTFLIALVLKATLGLRVSEEDEERGVDLTLHDESAYHYDVGFGGVPVPAD
+AQAHRGGAAG
+>KD337_NAFOICDF_01937
+MTETTPLDAGAVWTVTAAALVLLMTPGLALFYGGMTRAKSALNMMMMSFVSMGLIGVAWI
+LWAYGMTSGDGLAGIVGSPLNDLGAVQSMADGDLISVGFSATFAIIAVALISGAVADRAK
+FSTWCVFVPVWVTLVYAPLAYMVWGGGLLSADGAIGARLGEALDFAGGLVVHISAGVAAL
+VLAMMMGKRQGFGVDAAHRPHNVPFTMLGAALLWFGWFGFNSGAASDVEQLGLTWVTTLV
+AAAAGMLGWVLVEWLRRGRPTSIGTASGIVSGLVAITPACAFVSPLGAVVIGLVAGAACA
+LAVNLKYRWGFDDSLDVVGVHLTAGILGTLLIGLFALPETGHAGLFHGGDGSLLLAQTVA
+VVVAVVFTAVVTAVIAFVLRATLGLRVSVEEEERGVDLTLHDETA--YDVGFGGVPVPTD
+AQARSTAAAE
+>SA211_MHAAABBN_00622
+MEESNVLDAGTVWMVTSAAMVLLMTPGLAIFYGGMTRAKSSLNMIMMSFVSMGLVGVVWV
+LWVHGMTGGDGWAGVVGNPAGDLGLTGTMAEGGLVAAAYGATFAIIAVALISGAVADRFK
+FVTWCVFVPVWTTVVYAPLAYMVWGGGLLSEDGAIGARLGEALDFAGGLVVHISAGVAAL
+VLALLLGKRHGFGVDPGHRPHNVPFTMLGAALLWFGWFGFNGGAAGGVDELGLIWVDTLA
+AGAAGMLGWVFVEWLRRGRPTSIGTASGIVSGLVAITPACAYVSPLGAVVIGLVSGAASA
+LAVNLKYRLGFDDSLDVVGVHLTSGILGTVLIGFFALPGEGRAGLFYGGDAGLLVAQTVA
+VLVAVVFTAVVTTAIALVLRGTMGLRVSKEDEERGVDLTLHDESA--YDVGFGGVPVPAE
+AR--------
+>TT9_LFPAFLNI_00851
+MEESNVLDAGTVWMVTSAAMVLLMTPGLAIFYGGMTRAKSSLNMIMMSFVSMGLVGVVWV
+LWVHGMTGGDGWAGVVGNPAGDLGLTGTMAEGGLVAAAYGATFAIIAVALISGAVADRFK
+FVTWCVFVPVWTTVVYAPLAYMVWGGGLLSADGAIGARLGEALDFAGGLVVHISAGVAAL
+VLALLLGKRHGFGVDPGHRPHNVPFTMLGAALLWFGWFGFNGGAAGSVDELGLIWVATLA
+AGAAGMLGWVFVEWLRRGRPTSIGTASGIVSGLVAITPACAYVSPLGAVVIGLVSGAASA
+LAVNLKYRLGFDDSLDVVGVHLTAGILGTVLIGFFALPDEGRAGLFYGGDAGLLVAQTVA
+VLVAVVFTAVVTTAIALVLRGTMGLRVSKEDEERGVDLTLHDESA--YDVGFGGVPVPAE
+AR--------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001387.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001387.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7d1a591910f81178bbeb6c14d68b40afe6ec7727
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001387.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02040
+MCQTGHVEIVLIISVVLALLVGGLIVGLLDRRPAPPKGSYQGVRDADDPRPAPRHAAPGG
+STAVLERPEAEEAPVDLVEPE--VVEEVEAEPA-APELERPEAAGSRLARLRARLLKSNN
+VFGKGLLALLSRDRIDEDTWDEIEETLLMADLGTEPTMVLVDRLKSRVTVEGTREPEQVR
+ELLREELVAMVDPSMDRRLAASRRDGRPAVTLVVGVNGVGKTTTVGKLARVLVAEDRDVV
+LGAADTFRAAAAEQLATWGARVGVPTVRSEKEGADPASVAYEAVAEGIRLEADVVLVDTA
+GRLQNKSNLMDELGKIKRVIEKQAEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGIVLT
+KLDGTAKGGIVVAIQRQLGVPVKLIGLGEGADDLAPFTAEGFVDALLAD
+>KBS0714_MOLHKGIG_00902
+MCETGHVEIVLIISVVLALLVGGLIVGLLDRRPAPPKGSYQGVRDADDPRPGPRHAAPGG
+STAVLERPDAEEATVDVAEPE--VVEEVETAPA-APELERPEAAGSRLSRLRARLLKSNN
+VFGKGLLALLSQDRIDEDVWDEIEETLLMADLGTEPTMELVDRLKARVTVEGTRDPEQVR
+ALLREELVAMVDPSMDRRLAATRRDGRPAVTLVVGVNGVGKTTTVGKLARVLVAEDRDVV
+LGAADTFRAAAAEQLATWGARVGVPTVRSEKEGADPASVAFEAVAEGIRAEADVVLVDTA
+GRLQNKSNLMDELGKIKRVIEKQAEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGIVLT
+KLDGTAKGGIVVAIQRQLGVPVKLIGLGEGADDLAPFTAEGFVDALLAD
+>KD337_NAFOICDF_01938
+MI------TVIVISVVLALLLGVVLVGLLDRPVAPPKGTYTELRDSDDPAPAGLVADPSS
+APAPEEALEETGRAGSHAAAP--VAEPVEAAEAPERQLERPEAAGTRLQRLRARLLKSNN
+VFGKGLLALLSRDHIDEDVWDEIEETLLMADLGTEPTMELVDRLKARVTVDGTRDPESVR
+ALLREELVAMVDPSMDRRLAATPHDGHPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTVV
+LGAADTFRAAAAEQLATWGARVGVETVRSDVEGADPASVAFEAVKTGIEREADVVLVDTA
+GRLQNKANLMDELGKIKRVIEKQAEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGIVLT
+KLDGTAKGGIVVAIQRQLGVPVKLIGLGEGADDLAPFSAEGFVDALLAA
+>SA211_MHAAABBN_00621
+---------MLIVSVVAALLLGGVLVGLLDRRPAPPKGSYQGVRDADDPRPSPRHAAPSG
+STAVLERPEVDEAPAVVAEPEPAVVEEVEPAPA-KPEYERPEAAGSRLARLRARLLKSNN
+VFGKGLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKARVTVEGTRDPEQVR
+TLLREELVAMVDPSMDRRLAATRKGDRPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTVV
+LGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVELGIAEGVDVVLVDTA
+GRLQNKANLMDELGKIKRVIEKQAEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGIVLT
+KLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGFVDALLTD
+>TT9_LFPAFLNI_00850
+---------MLIVSVVAALLLGGVLVGLLDRRPAPPKGSYQGVRDADDPRPSPRHAAPSG
+STAVLKRPEVDEAPAVVAEPEPAVVEEVEPAPA-KPEYERPEAAGSRLARLRARLLKSNN
+VFGKGLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKARVTVEGTRDPEQVR
+TLLREELVAMVDPSMDRRLAATRKGDRPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTVV
+LGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVLVDTA
+GRLQNKANLMDELGKIKRVIEKQAEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGIVLT
+KLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGFVDALLAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001388.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001388.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d54da60f6366c992a329e9a8c6cda133f75c033c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001388.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02041
+---MPSSSSRTARAPLPREIKVLVAAAFIIAIGFGIIAPLLPQY----AASFNASATAVA
+AVVSVFGLTRLLFAPLSGRLTNRLGETPVYMTGVLIVAASMFLIAFAQTFAQLLAFRAIG
+GVGSTLFTVSAMAFLARKAPPSMRGRVSGAYASAFLIGNIVGPIVGSALAVFGYRAPFLI
+YGTSLVIAAALVFFMLKDTRLADRAARDARPAMPVKEALENPSYRAALVSFFANGWATFG
+VRNSVMPLFAASAFAGSGLLGWQV---DGALMAGLALSVFALGNVVAVTFSSRLSDMHGR
+KPLILTGLLVMAVTTGVLGWMQSPLLFLLACLVSGAGTGVLNAPQQAAIADVVGQGRRSG
+AVMSSAQMSADLGAIIGPLLAGLVVDAAGYGWAFVLTGGVILLGALAWWRAPETNLPIVP
+GGPRTGSLPLVRPEDA---RVTPREDG
+>KBS0714_MOLHKGIG_00900
+---MPSSPP-AARVPLPTEIKVMVAAAFVIAIGFGIIAPLLPQYAEMFASDFANPATAVA
+AVVSAFGLTRLLFAPVSGRLTNRLGETPVYMTGVLIVAASMFLIAFAQDYTQLLLYRALG
+GVGSTLFTVSAMAFLASKSPPTIRGRVSGAYASAFLIGNIVGPIVGSVLAVFGFRVPFLI
+YGTSLVIAAGIVFVMLRDTRLQDRARGETRPVMPLRAALGHRSYRAALTSMFANGWATFG
+VRNAITPLFAASAFTGTALLGWGITEENRQLMAGLALSVFAAGNVLAVASSSRLSDLHGR
+KPLILVGLAVMAVFTGAIGWLESPLLFLVSCALAGAGTGTLNAPQQAAVADLVGQDRKAG
+PVMSAAQMSGDLGAILGPLLVGLVVDAAGYGWGFVVTGAVIAVGALAWARAPETNLPVAP
+GGPRTGSLPKVDP-DVDPCRMEGRELG
+>KD337_NAFOICDF_01939
+---MPTTPS-AARAPLPREIKVLVAAAFVIAIGFGIIAPLLPQYAERFASDFANPATAVA
+AVVSAFGLTRLLFAPLSGRLTNRLGETPVYMTGVLIVAASMYLIAFAQDYTQLLVFRGLG
+GVGSTLFTVSAMAFLASKSPPSMRGRVSGAYASAFLIGNIVGPIVGSVLSVFGYRVPFLI
+YGTSLVIAAAIVFFMLKDTRLHDRAAADSRPVMRLREALDHPSYRAALVSMFANGWATFG
+VRNAVTPLFAASAFTGTALLGWTVTQENQALMAGLALSVFAAGNVAAVTFSSRLSDVRGR
+KPLILLGLAVMAVCTGVIGWMTSPLLFLVACLLAGAGTGTLNAPQQAAVSDLVGQGRKAG
+PVMSVAQMAADLGAISGPMLVGLVVDGAGYGWAFAVTGAVLAVGFLAWLRAPETNLPIVP
+GGPRTGSLPKIAPEDVAP---PHHREA
+>SA211_MHAAABBN_00620
+MAVMPSSSARSSRVPLPREIKVLVAAAFIIAIGFGIIAPLLPQY----AATFDASAVGVA
+AVVSAFGLTRLLFAPVSGKLTNRLGETPVYMTGVLIVAASMFLVAFAQTFPQLLLFRALG
+GVGSTLFTVSAMAFLARKSPPTMRGRISGAYASAFLIGNIVGPIVGSALSVFGYRAPFLI
+YGSSLVVAAALVFFLLKDTRLADRAVRDVRPAMPVREALSNPSYRAALVSFFANGWATFG
+VRNSVMPLFAATAFAGTGLLGWQV---DGAMMAGLALSVFALGNVVAVSFSSRLSDVHGR
+KPLILTGLLVMAVTTGAIGWVGTPSLFLIACLVSGAGTGILNAPQQAAIADVVGQDRRSG
+SVMSSAQMSADLGAIVGPLAAGLVVDVAGYGWAFVVTGAVILLGAIAWWRAPETNLPVVP
+GGPRTGALPKIEPEDA---RPPHREDG
+>TT9_LFPAFLNI_00849
+MAVMPSSSARSSRVPLPREIKVLVAAAFIIAIGFGIIAPLLPQY----ASSFNASATAVA
+AVVSAFGLTRLLFAPLSGRLTNRLGETPVYMTGVLIVAASMFLIAFAQTFEQLLLFRALG
+GVGSTLFTVSAMAFLAAKSPPTMRGRVSGAYASAFLIGNIVGPIVGSALAVFGFRAPFLI
+YGTSLVIAAGMVFVLLRDTRRADRGTGDPRPTMPLKEAFGLPSYRAALASFFANGWATFG
+VRNSVMPLFAATAFAGTGLLGWQV---DGAFMAGLALSVFALGNVVAVTFSSRLSDVHGR
+KPLILTGLLTMAATTGVIGWMSSPALFLLACLLAGAGTGTLNAPQQAAIADVVGQGRRSG
+AVMSAAQMSADLGAISGPLLAGLVVDTAGYGWAFVLTGGVILLGALAWWRAPETNLPIVP
+GGPRTGSLPLVRPEDA---RVTPREDG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001389.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001389.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a05f7fbae910dea11893be9ee9b0400e7c76ad80
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001389.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02042
+MSGSRPLDPAVVLDEAGMTYTVRSSDT---GARRAGIGGMLRGVRGVRTDQVQALAPLSL
+IVDRGESVGIIGTNGSGKSTLMKLITGEIHPTTGRVYATSTPVMLGVNAALVRQISGEDN
+IRLGCLAMGMTTAEAAEKRDDVVRLAGLDDQALQLPLKAYSSGMASRLQFAIATSVDPDI
+LLIDEALNTGDAQFRARTRARIDELRARAGCVFLVSHSLTTLKQMCSRVIWIEQGILTMD
+GNPEVVTGNYARYTRHRSNGADEVAERLLAEARAGVKRVAVRWAG--GQRP-------SG
+VIAD
+>KBS0714_MOLHKGIG_00895
+M-SADPLTPSVVVDEASMTYRVLSAEA---VQPRRGLRGRVRAARGVRTTEVQALQPLSF
+VVGRGESVGVIGTNGSGKSTLMKLITGQMRPTTGHIYATSTPVMLGVNAALVRQVSGEDN
+IRLGCLAMGMSRAEAEAKRDAVVALSGLDDHALQLPLKAYSSGMAARLQFAIATSVDPDI
+LVIDEALNTGDAQFRERTRQRLDELREQAGCVFLVSHSLSTIQEMCQRVIWIERGVLTMD
+GSPRAVTRGYNLYARAMAQGRTEEAQEILERKQSELVRERIAWSG--GERP-------TG
+ITAL
+>KD337_NAFOICDF_01940
+M-TDTTVDYALVLDRVSMTYRVPSSAADSVAALPAWRRGLARALRQPPRVPVHALHEMTL
+GLEQGRTLGLVGRNGSGKSTLSQIIAGKLAPSTGRVLATATPMMLGVNAALVPAMSGRQN
+IVLGCLALGMAKDEVMAKTPEIAASTGL-GEAIDLPIETYSSGMSARLRFAIATSRDPEV
+LVIDEALNVGDSQFRARAKERMQELKRKAGAVVLVSHDNKTILDSSNKVLWLDKGRPVME
+GSPQRVMDRYEQYNEMLAAQKVDEARAFVEDLRTTY-RPRVVLPATDMHLPSVQEVEFSP
+RHAL
+>SA211_MHAAABBN_00617
+M-SAEPLTPSVVVDEASMTYRVLSAEA---VQPRRGLRGRVRAARGVRTTEVQALQPLSF
+VVGRGESVGVIGTNGSGKSTLMKLITGQMRPTTGHIYATSTPVMLGVNAALVRQVSGEDN
+IRLGCLAMGMSRAEAEAKRDAVVALSGLDDHALQLPLKAYSSGMAARLQFAIATSVDPDI
+LVIDEALNTGDAQFRERTRQRLDELREQAGCVFLVSHSLSTIQEMCQRVIWIERGVLTMD
+GSPRAVTRGYNLYARAMAQGRTEEAQEMLERKRSELVRERIAWTG--GERP-------TG
+ITAL
+>TT9_LFPAFLNI_00846
+M-----------------------------------------------------------
+----------------------------------------------------PNLTGLDN
+IRIGLLAMGLTPAEVHDRIPQVAELADI-GKSIRMPMRTYSSGMRARLRFAISVASQPDI
+IMIDEALATGDDAFRERSNQAMRDLIARSGTGFLVNHSAGVIREMCTRVVWMDEGAIIED
+GDTLDVMQHYSYFMSALRKHGEEKALEARARYETTEAERIVALKGTTGH-----------
+----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001392.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001392.fa
new file mode 100644
index 0000000000000000000000000000000000000000..28e17bfaa78108d3c0b548d65caa50c83ed74aae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001392.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02051
+M--------------------TTQIKDVAVIGLGYIGLPTAAILAENGVRVHGVDVSQRT
+VDAVNAGTVPFVEPDLADFVERNVKAGRLSASLKTPQADAYIVAVPTPFKDGHSPDLGYI
+EAAARGLAPQLRGGELVILESTSPPGATEHMAAVIREARPDLDGATLDFAHCPERVLPGR
+VMIELVTNDRIVGGSTPEAAQRAKQLYETFCQGEILVTDCVTAEMAKLVENSFRDVNIAF
+ANELSLICSDLGIDVWELIELANHHPRVDILQPGPGVGGHCIAVDPWFIVDAAPQTARII
+RAAREINDGKPKWVVDQAKAAAFDVQQATGRAPVVAVLGLAFKPNIDDLRESPALNIATE
+VAQQFTGSRILVVEPHVEELPAALAGRDNVELVPAEDGIREADVVLLLVDHDAFASLGTT
+TEGKKVIDTRGQWR-----
+>KBS0714_MOLHKGIG_00885
+---------------------MKKIETVAVIGLGYIGLPTAAILAENGVRVLGVDVSDRT
+VDAVNAGTVPFVEPDLAGFVARGVEKGLLSASTTTPAADAYIVAVPTPFKDGHSPDLGYI
+EAAARGLAPQLTGDELVILESTSPPGATEYMAEVIFAERPELREAELDFAHCPERVLPGR
+VMVELVTNDRIVGGSTRRAAERARDLYRTFCEGEILLTDTRTAEMAKLVENSFRDVNIAF
+ANELSVICAEQGIDVWELIELANHHPRVNILQPGPGVGGHCIAVDPWFIVDAAPQTARLI
+RAAREINDGKPQWVIDQVKAAAFDVQQATGRAPVVAALGLAFKPNIDDLRESPALNIAAE
+LAGQFSGSDVLVVEPHVTELPAALQGKDNVRLVAVDEALEAADIVVLLVDHSAFADLGDR
+VADKRVIDTRGQWRTDPSL
+>KD337_NAFOICDF_01945
+MMGTPPALRCRDVNARMGIQNVTQIKTVAVIGLGYIGLPTAAILAENGLTVHGVDVSPRT
+VDAVNAGKVPFVEPDLADFVERNVAAGRLDASLETPKADAYIVAVPTPFQGDHAPDLSYI
+EAAARGLAPQLTGDELVILESTSPPGATDHMADVIREVRPDLKDAPLDFVHCPERVLPGR
+VMVELVTNDRIVGGSTPAAAERARDLYRSFCEGEILLTDCRTAEMAKLVENSFRDVNIAF
+ANELSLICAEQGIDVWELIGLANHHPRVNILQPGPGVGGHCIAVDPWFIVDAAPQTARII
+RAAREINDAKPQWVIERAKAAAFDVQQKEGRPAVVAALGLAFKPNIDDLRESPALNIAAQ
+LADEFSGSTVLVSEPHVDELPAKLQGKENVRFVPAEQAVAEADVVLLLVDHDAFAGLGEQ
+TAGKRVIDTRGQWR-----
+>SA211_MHAAABBN_00607
+---------------------MKKIETVAVIGLGYIGLPTAAILAENGVKVLGVDVSDRT
+VDAVNAGTVPFVEPDLAGFVARGVEKGLLSASTTTPAADAYIVAVPTPFKDGHSPDLGYI
+EAAARGLAPQLTGDELVILESTSPPGATEYMAEVIFAERPELREAELDFAHCPERVLPGR
+VMVELVTNDRIVGGSTRRAAERARDLYRTFCEGEILLTDTRTAEMAKLVENSFRDVNIAF
+ANELSVICAEQGIDVWELIELANHHPRVNILQPGPGVGGHCIAVDPWFIVDAAPQTARLI
+RAAREINDGKPQWVIDQVKAAAFDVQQATGRAPVVAALGLAFKPNIDDLRESPALNIAAE
+LAGQFSGSDVLVVEPHVTELPAALQGKDNVRLVAVDEALEAADIVVLLVDHSAFADLGDR
+VADKRVIDTRGQWRTDPSL
+>TT9_LFPAFLNI_00843
+M--------------------TTQIKDVAVIGLGYIGLPTAAILAENGVRVHGVDVSQRT
+VDAVNAGTVPFVEPDLADFVERNVKAGRLSASLKTPQADAYIVAVPTPFKDGHSPDLGYI
+EAAARGLAPQLRGGELVILESTSPPGATEHMAAVIREARPDLDGVTLDFAHCPERVLPGR
+VMIELVTNDRIVGGSTPEAAQRAKQLYEAFCQGEILVTDCVTAEMAKLVENSFRDVNIAF
+ANELSLICSDLGIDVWELIELANHHPRVNILQPGPGVGGHCIAVDPWFIVDAAPQTARII
+RAAREINDGKPKWVVDQAKAAAFDVQQATGRAPVVAVLGLAFKPNIDDLRESPALNIAIE
+VAQQFTGSRILVVEPHVEELPAALAGRDNVELVPAEDGIREADVVLLLVDHDAFASLGAT
+TEGKKVIDTRGQWR-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001394.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001394.fa
new file mode 100644
index 0000000000000000000000000000000000000000..80296a30ba8dbb5b5397b9b9675a74bc62fa8c2a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001394.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02054
+MSQPPAASWTP--------EPL-----PRP--ARSPEPPRPARR-----------RRWPW
+VLGVLAAVLVVLLALGAWYAVSLARTFDDHRQTVDAGALEQAGGGEPVNVLVLGSDSRGG
+EGEEDMGERSDAMMLVHLPADRSQVFVMSVLRDSWVEIPGHGEAKVNAAFDLGGYPLAVD
+TVEQLLGVPVHHVVEMDFQGFRGVTNALGGVEVCNPVAFSSGQTSPSYYPRGPVLLQDTA
+ALRYVRERHAFDDGDVSRVQNQQRYLAGAVERFLSPQILGNPARTTEVVATFSDHLGVDA
+GLTSGVVASLAWQLRGVRAGDVEMFTVPRAGFGYSPDGDSIVELDEAKLADLRSALKDDD
+VQRYVAEHESED-------GQDASAAGADPAPVLALLAQPAPT---PAVGEDPCAD
+>KBS0714_MOLHKGIG_00881
+MSHPPAASWTP--------EPL-----PRPEPPRDDAPPVARRR-----------RRWPW
+VVGLLAVLLAALLGLGAWYTSSLGRTFDDHRQTVDVGALEQAAGNGPLNVLVLGSDSREG
+EGEQDMGQRSDTMMLVHIPADRRQVYVMSVLRDSWVTVPGHGEAKINSAFDTGGYTLAVD
+TVELLLGVSIHHVLEVDFQGFRGVTNALGGVEVCNPRAFSSGQANPSYYPRGHILLQDTA
+ALRYVRERHAFDDGDVTRVENQQRYLAGAMDRFLSPQILGNPARTTEVVATFSDHLGVDE
+GLTSGVIASLAWQLRDVRGEDVEMFTVPRKGFAEGPNGDAIVELDEDKLADLRSALADDD
+VQRYVDEHEPTK-------EKKAQAAGG-PAPVLTLLTGTTPA---PVLGEDPCDD
+>KD337_NAFOICDF_01948
+MTQPPQQPWIPPERPGGAADPLEGLRGPAPAAPPTSTPPATRRSGGGRARRRRPLRRFLA
+VLGVLALLLVVALGA---YGLLLARTFDGHRQTVSAAAFADPGNDGPVNFLVLGSDSRAA
+EDSAETSQRSDTMMLVHVPADRRHVYVISVLRDSLVEIPGRGQRKANAAYELGGPELTAA
+MLDKLLGVPVHHLAELDFQGFRGMTTALGGVEVCNPHAFSSGQKNPSFYPRGRIELKDTA
+ALRYVRERHAFPEGDVMRVQNQQRFVRGAVAAFLDPAVVLNPPRAVDVVAGLSDHLTVDE
+GLDSATLASLAWQLRGVDRSALTMFTVPRAGYGTSPDGQDVVLLDADRMAALRDALQRDD
+VESYLRAHDPEALAAGEDVQPALAAAPG-ATPLLTELAAAPPAGEGTLLGEDPCGG
+>SA211_MHAAABBN_00603
+MSHPPAASWTP--------EPL-----PRPEPPRDDAPPVARRR-----------RRWPW
+VVGLLAVLLAALLGLGAWYAGSLGRTFDDHRQTVDVGALEQAAGDGPLNVLVLGSDSREG
+EGEQDMGQRSDTMMLVHIPADRRQVYVMSVLRDSWVTVPGHGEAKINSAFDTGGYALAVD
+TVELLLGVPIHHVLEVDFQGFRGVTNALGGVEVCNPQAFSSGQANPSYYPRGHILLQDTA
+ALRYVRERHAFDDGDVTRVKNQQRYLAGAMDRFLSPQILGNPARTTEVVATFSDHLGVDE
+GLTSGVIASLAWQLRDVRGEDVEMFTVPRKGFAEGPNGDAIVELDEDKLADLRSALADDD
+VQRYVDEHEPEK-------EKKAQAAGG-PAPVLTLLTGTTPA---PALGENPCDD
+>TT9_LFPAFLNI_00840
+MSHPPAASWTP--------EPL-----PRPESPRDDASSVARRR-----------RRWPW
+VVGVLAVLLAALLGLGAWYAGSLGRTFDDHRQTVDVGALEQAAGNGPLNVLVLGSDSREG
+EGEQDMGQRSDTMMLVHIPADRRQVYVMSVLRDSWVTVPGHGEAKINSAFDTGGYALAVD
+TVELLLGVPIHHVLEVDFQGFRGVTNALGGVEVCNPQAFSSGQANPSYYPRGHILLQDTA
+ALRYVRERHAFDDGDVTRVKNQQRYLAGAMDRFLSPEILGNPARTTEVVATFSDHLGVDE
+GLTSGVIASLAWQLRDVRGEDVEMFTVPRKGFAEGPNGDAIVELDEDKLADLRSALADDD
+VQRYVDEHEPTK-------EKKAQAAGG-PAPVLTLLTGTTPA---PALGEDPCDD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001398.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001398.fa
new file mode 100644
index 0000000000000000000000000000000000000000..53d264dde20b1c066b4c102b199a2720ef56ce90
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001398.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02058
+MDTTQRQDADSSWVIPVRDLTRGAGVQRELTAQWPAPAGVTTPLLGIPEGDPVELDLRLE
+SVHEGVLVTGTADATLKGECSRCLLPLHEGITVDLQELYLTGASEDEAGEQPLVVRETVD
+LEPVFRDAVVIALPFQPLCRPDCEGLCADCGIRLEDAPEGHAHERVDPRWAALAHLAGTS
+-ETSITETEER
+>KBS0714_MOLHKGIG_00877
+MDSIQHHGADSPWVIPVRDLTRGAGVQRELTAEWPAPAGVSTPLLGIPEGDPVELDLRLE
+SVHEGVLVTGTADATLKGECGRCLRPLHEGITVDLQELYLTGTSEDDAGEQPLVVRETVD
+LEPVFRDAVVIALPFQPLCRPDCEGLCADCGIRLEDAPEGHAHERVDPRWAALAHLAGTS
+-ETSITETEER
+>KD337_NAFOICDF_01952
+MATTVPSGAPSPWVLSVRDLARGAGVQRELTTRLPAPAAVSMPMLGIPEGDPVDLELRLE
+AVHEGVLVTGTAHADLTGECSRCLLPLHEGITVDLQELFLADPPAEGDDEQPLVEHETVD
+LEPVFRDAVVTALPFQPLCRPDCEGLCADCGIRLEDAPAGHAHERVDPRWAALAALADTT
+EETSITETEKR
+>SA211_MHAAABBN_00599
+MDSIQHHGADSPWVIPVRDLTRGAGVQRELTAEWPAPAGVSTPLLGIPEGDPVELDLRLE
+SVHEGVLVTGTADATLKGECGRCLRPLHEGITVDLQELYLTGTSEDDAGEQPLVVRETVD
+LEPVFRDAVVIALPFQPLCRPDCEGLCADCGIRLEDAPEGHAHERVDPRWAALAHLAGTS
+-ETSITETEER
+>TT9_LFPAFLNI_00836
+MDSIQHHGADSPWVIPVRDLTRGAGVQRELTAEWRAPAGVSTPLLGIPEGDPVELDLRLE
+SVHEGVLVTGTADATLKGECGRCLRPLHEGITVDLQELYLTGTSEDDAGEQPLVVRETVD
+LEPVFRDAVVIALPFQPLCRPDCEGLCADCGIRLEDAPEGHAHERVDPRWAALAHLAGTS
+-ETSITETEER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001399.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001399.fa
new file mode 100644
index 0000000000000000000000000000000000000000..19b32f765170d70fb370abcbc64a61f4f44fd1e2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001399.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02059
+M----TV--PSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVAEARRAG
+LQDVLMITGRNKRALEDHFDRHPALEATLERKGDATRLAQIRESDLVGDIHYVRQGEALG
+LGHAVNCARRHVGDEPFAVLLGDDIIGDGEALLARMIDVQQRLGGSVVALMEVPEEAVSA
+YGVAAVEAVPGEGEDVVRVTGLVEKPAREDAPSTLAVIGRYVLASQVFDVLDRTPPGRGG
+EIQLTDALQTLADDDGEGGGVHAVVFDGRRYDTGDKLGYLQAVVEFGTRHEELGGDLRAW
+LKAFAAGL
+>KBS0714_MOLHKGIG_00876
+M----TVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVTEARRAG
+LADVLMITGRNKRALEDHFDRHPALEAALEHKGDTKRLAQIHESDLVGDIHYVRQGEALG
+LGHAVNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSA
+YGVAAVQAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGG
+EIQLTDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGTRHEDLGADLRAW
+LREFTAGL
+>KD337_NAFOICDF_01953
+MTEQSTAASPTRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVAEAVSAG
+LGDVLMITGRNKRALEDHFDRHPALEQVLEAKGDTKRIDLIRASDLVGDIHYVRQGEALG
+LGHAVGCARRHVGDEPFAVLLGDDLIGEDEGLLARMIDVQHRLGGSVIALMEVPEDAVSA
+YGVAAVAPVDGEDDDVVAVTSLVEKPARGDAPSNLAIIGRYVLAPQVFEVLERTAPGRGG
+EIQLTDALQTLAAGEGEGFGVHAVVFRGRRYDTGDKLGYLQAVVELGVRHPELGGDLREW
+LKGFAAGL
+>SA211_MHAAABBN_00598
+M----TVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVTEARRAG
+LADVLMITGRNKRALEDHFDRHPALEAALEHKGDAKRLAQIHESDLVGDIHYVRQGEALG
+LGHAVNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSA
+YGVAAVEAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGG
+EIQLTDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGARHEDLGADLRAW
+LREFTAGL
+>TT9_LFPAFLNI_00835
+M----TVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVTEARRAG
+LADVLMITGRNKRALEDHFDRHPALEAALEHKGDATRLAQIHESDLVGDIHYVRQGEALG
+LGHAVNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSA
+YGVAAVQAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGG
+EIQLTDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGTRHEDLGADLRAW
+LREFTAGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001401.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001401.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d3732530f1f35b52987ce0600d67e13d2e582a5d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001401.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02061
+MNADASDRTRPPRTGPAPAP---ATGPAPADVAGTAFVAGPWRRTAAAAGLLDDGAPVPT
+VFETMTGLAVEHGAVNLGQGFPDADGPDALLRLAAEAVLAGPNQYAPGTGDPVLRQAVAE
+HRRRHWGVTEDPATQVMITTGATEGIAATVLAFVRPGDEVITVEPFYDSHAATIALAGGR
+HVSVPVEAPDFLPDPARVADAITDRTRLLIVNTPHNPTGAVYPRELLEELVTLCRSRGVL
+ILSDEVYDHLVYEGEHVSLRSVAGAEDIALTVSSAGKAFAVTGWKVGWLTGPAELVGAAR
+AVKQFLTYSSGPAFQRALGAYLPTEDAKRHLAGQRERYRDARDRLVAGLRAADLDPVVPA
+AGYFVVVDLAPWGVTDAAEAAVRWTREAGVTGIPVGALCRPDGGHLRSWLRLAFCKSPDA
+IDEAMRRLAAAAPALDGRRPRP
+>KBS0714_MOLHKGIG_00874
+MD------------GTQPTP---GAAPHDVD------VDAPWRRTAAAAGLLGDAGPVPT
+VFETMTGLAVEHGAVNLGQGFPDADGPDALLRLAADAVLAGPNQYAPGTGDPALRQAVAE
+HRRRHWGVTEDPATQVMITTGATEGIAATVLAFVRPGDEVVTVEPFYDSHAATIALAGAR
+HVSVPVEAPDFLPDPARVAAAMTDRTRLLIVNTPHNPTGAVYPRELLEELVALCRSRGVL
+ILSDEVYDHLVYEGEHVSLRSVAGAEDIALTVSSAGKAFAVTGWKVGWLTGPAELVGAAR
+AVKQFLTYSSGPAFQRALGAYLPTDGAERHLAGQRERYRDARDRLVAGLREAGLDPVVPA
+AGYFVVVDLAPWGVTDAAEAAVRWTREAGVTGIPVGALCRPDGGHLRSWLRLAFCKSPDA
+IDEAMRRLAEAAPRLRA----A
+>KD337_NAFOICDF_01955
+MS------------HDSPSPTDAAAAPSDVR------LAGPWRAASAAAGVLRDGAPVPT
+VFETMTALAVEHGAVNLGQGFPDADGPPELLALAAEAVTTGPNQYAPGTGRADLRAAVAA
+HRARHWGVAEDPDTQVLATTGATEAIAATVLALVRPGDEVITVEPFYDSHAAVVALAGGR
+HVTVPVHAPDFLPDPARIAAAITPRTRLLIVNTPHNPTGAVYPRALLEELVALCRARDVL
+MLSDEVYDHLVHEGRHVTLRAIPGAERIALTASSAGKSLAVTGWKVGWLTGPADLVAAVR
+GVKQFLSYSSGPAFQQAVAAFLPR--ADDFLAGQLARHRRSRDLLVSGLRDIGLDPVVPA
+AGYFTVVDLAPWGVRDAAAAARTWTERAGVAGIPVSALCRPDGDHLRSWLRLTFCKSEDT
+VAEAVARLTRHAADLRA----G
+>SA211_MHAAABBN_00596
+MD------------GTQPTP---GSARHDVD------VDAPWRRTAAAAGLLGDTGPVPT
+VFETMTGLAVEHGAVNLGQGFPDADGPDALLRLAADAVLAGPNQYAPGTGDPVLRQAVAE
+HRRRHWGVTEDPATQAMITTGATEGIASTVLAFVRPGDEVITVEPFYDSHAATIALAGGR
+HVSVPVEAPDFLPDPARVADAITDRTRLLIVNTPHNPTGAVYPRELLEELVALCRSRGVL
+MLSDEVYDHLVYEGEHVSLRSVAGAEDIALTVSSAGKAFAVTGWKVGWLTGPAELVGAAR
+AVKQFLTYSSGPAFQRALGAYLPTDDAERHLAGQRERYRDARDRLVAGLREAGLDPVVPA
+AGYFVVVDLAPWGVTDAAEAAVQWTREAGVTGIPVGALCRPDGGHLRSWLRLAFCKSPDA
+IDEAMRRLAEAAPRLRA----P
+>TT9_LFPAFLNI_00833
+MD------------GTQPTP---RSAPHDVD------VDAPWRRTAAAAGLLGDAGPVPT
+VFETMTGLAVEHGAVNLGQGFPDADGPDALLRLAADAVLAGPNQYAPGTGDPALRRAVAE
+HRRRHWGVTEDPATQVMITTGATEGIAATVLAFVRPGDEVVTVEPFYDSHAATIALAGGR
+HVSVPVEAPDFLPDPARVAAAMTDRTRLLIVNTPHNPTGAVYPRELLEELVALCRSRGVL
+ILADEVYDHLVYEGEHVGLRSVAGAEDIALTVSSAGKAFAVTGWKVGWLTGPAELVGAAR
+AVKQFLTYSSGPAFQRALGAYLPTDDAERHLAGQRERYRDARDRLVAGLREAGLDPVVPA
+AGYFVVVDLAPWGVTDAAEAAVQWTREAGVTGIPVGALCRPDGGHLRSWLRLAFCKSPDA
+IDEAMRRLAEAAPRLRA----A
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001404.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001404.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2e00382dd65b6cfc3ce7a6cf08c09658d227a111
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001404.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02064
+M-STPPRPSLVRHWLALAEELVGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADAC
+PAQDDAGAVLARAGAAALDLARGNSGTLLAVALAGMAEPLRGRARADAFALAAAFGAADR
+AARQALSDPREGTILTVLSAASRSLARSATQAPDSPAVAADVDPAVRLGPAVTAMMADCL
+RAVEQTESQLAPLAQARVVDAGAVGLLWVLEALRAAVTDTAPDEELATALHGYVEGVRPG
+P-EPA-------GEDAVEVMGTLALTPLAAADLRRRLAETGDSVILAPVGTERDEHGRVP
+WRVHVHVPRAADAVELMRAAGEVQGLAVTELSGDAA--------GPDA----DGCHGR
+>KBS0714_MOLHKGIG_00871
+---------------------MGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADAC
+PAQDDAGAVLAHAGAAALDSARGNSGMLLAVSLAGMAEPLRGRERVDAFALAAAFGAADR
+AARQALSDPREGTILTVLSAAARSLARSSTQAPDTPAVAGDADPAVRLGPAVTLMLADCV
+QAVEETESLLAPLTRAHVVDAGAVGLLWVFEALRAVVTGTPVDEELATALPGYGEGAHAA
+EAEPAA-AAEAPAEGAVEVMGTLALTPLAAAELRRRLTEVGDAVILAPLGTARDGQGRVP
+WRVHVHVPRAEDAIGPLRAAGDVEGLTVTDLAGPSH--------GDDA--APDGCHGR
+>KD337_NAFOICDF_01958
+MIRARLRGALA--WLRGAEAALAQAAPRLDALNLFPVPDADTGSNMLATVRAARQAAER-
+SAGTDMSAVLRDAGAAALDSARGNSGTLLAVALVGLAAPLTPDAPLTTAELAAGARAADR
+AARAALSDPREGTILTVLREAATVL---------EAAAAGGREPAEALGSVVEA----AR
+RAVEDTEGQLAPLTRARVVDAGAVGLLLVLEALRAEVTRTPFDEGVVAALHGWADGPGAA
+GEDPQADGREAP---GVEVMCSIDLTPVDAAGLRRGLEEAGDSVILAPLSRAVDGAGRLR
+WRVHVHVARAEDAVALLEAAGAPEEVAVTDLWDPAHRHPDDPAEGDAASPAPDG-HGR
+>SA211_MHAAABBN_00593
+M-STPSRPSLVRHWLALAEELVGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADAC
+PAQDDAGAVLAHAGAAALDSARGNSGMLLAVSLAGMAEPLRGRERVDAFALAAAFGAADR
+AARQALSDPREGTILTVLSAAARSLARSSTQAPDTPAVAGDADPAVRLGPAVTVMLADCV
+QAVEETESLLAPLTGAQVVDAGAVGLLWVFEALRAVVTGTPVDEELATALPGYGEGVHAA
+EGEPAA-AAEAPAEGAVEVMGTLTLTPLAAAELRRRLADVGDAVILAPLGTARDGQGRVP
+WRVHVHVPRAEDAIGPLRAAGDVEGLTVTDLAGPSH--------GDDA--APDGCHGR
+>TT9_LFPAFLNI_00830
+M-STPSRPSLVRHWLALAEELVGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADAC
+PAQDDVGAVLAHAGAAALDSARGNSGMLLAVSLAGMAEPLRGRERVDAFALAAAFGAADR
+AARQALSDPREGTILTVLSAAARSLARSSTQAPDTPAVAGDADPAVRLGPAVTVMLADCV
+QAVEETESLLAPLTRAHVVDAGAVGLLWVFEALRAVVTGTPVDEELATALPGYGEGVHAA
+EGEPAA-AAETPAEGAVEVMGTLALTPLAAAELRRRLADVGDAVILAPVGTARDGQGRVP
+WRVHVHVPRAEDAIGPLRAAGDVEGLAVTDLAGPSH--------G-DA--APDGCHGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001407.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001407.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1322729b9d6bf4919cd3229ec8412600962332b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001407.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02067
+----------------MLLLFGGRSSEHPISCVTAAGVLHAADPQRWDVVPVGVARSGLW
+SHDELDVAAFRLDGETLPEVPEPEAPVSLRTLPDGTVELTAEDGSSLGRVDVVFPLLHGP
+WGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAAGLEVGPWETITDRDWARD
+PEAALARAGALAFPLFVKPARGGSSFGITRVSDPADLRAAVEEARRFDPKVVVEAGIVGR
+EIECAVLDGHGSDAPRASLPGEIVVKHDEGDLQFYDFQAKYQDDDAAQLSCPAELPEEQT
+RRLRELAVRAFEAVDGSGLGRCDFFHTPDGRWVVNEINTMPGFTPISMYPAMWERTGLSY
+DALISELLDLALERGVGLH
+>KBS0714_MOLHKGIG_00868
+MTATPAPEAAADARPRVLLLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLW
+SHDELDVASFRLDGDALPEVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGP
+WGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAAGLEVGPWETITARDWARD
+PEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFDPKVVVEAGIVGR
+EIECAVLDGHGSAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEI
+ERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVVNEINTMPGFTPISMYPAMWERTGLSY
+DDLISELLDLALERGVGLH
+>KD337_NAFOICDF_01961
+--MTQPPETAPGRRPRVLLLFGGRSSEHPISCVTAAGVLHAADRERWDVVPVGVAHSGLW
+SHGEVDAAAYALGDGELPSVPEPERPVSLRARADDAVELVGADGEDLGVVDVVFPLLHGP
+WGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAGGLEVGPWETITDRQWRND
+PEAALERAGALDYPLFVKPARGGSSFGITKVDAPEDLRAAVEEARRFDPKVVVEAGILGR
+EIECAVLDGHGAESPRASLPGEIVVKGAESGHQFYDFEAKYQDASAAQLSCPAELPEEAI
+ERLREQAVRAFEAVDGAGLGRCDFFYTPDGRWVVNEINTMPGFTSISMYPAMWERTGLPY
+GELISELLDLALERGVGLH
+>SA211_MHAAABBN_00590
+MTATPAPEAAADARPRVLLLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLW
+SHDELDVASFRLDGDALPEVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGP
+WGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAAGLEVGPWETITARDWARD
+PEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFDPKVVVEAGIVGR
+EIECAVLDGHGAAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGSTQLSCPAELPEEEI
+ERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVVNEINTMPGFTPISMYPAMWERTGLSY
+DDLISELLDLALERGVGLH
+>TT9_LFPAFLNI_00827
+MTAIPAPEAAAGARPRVLLLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLW
+SHDELDVASFRLDGGALPEVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGP
+WGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAAGLEVGPWETITARDWARD
+PEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFDPKVVVEAGIVGR
+EIECAVLDGHGSAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEI
+ERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVVNEINTMPGFTPISMYPAMWERTGLSY
+DDLISELLYLALERGVGLH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001408.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001408.fa
new file mode 100644
index 0000000000000000000000000000000000000000..30cddf6b556ddd540df95b1f932f49d742b2f04c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001408.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02068
+---------------------MSDPQTVAVLGAGSWGSAFARVLGTSTSPEGARARDVVI
+WSRRPEVAEVVNRDHANPEYLPGIELPACVRAVTDAFEAVRGAGVVVVAVPAQHVRETLR
+TLREDLAPDAVVVSLVKGLERGTDARMSQVCTEELGLTPDRFAVVSGPNLALEIARGEPT
+ATVVASGSSATAERIAALTAGPTFRPYTNTDVVGVEIGGVVKNVIALAVGICDGQGLGDN
+SKASVITRGLAETTRLAVALGGDPATMAGLAGLGDLVATCASPLSRNRTAGRHIGTGMSA
+EEAVAAMSQTAEGIKSVSAVVHVARAHGVEMPISELMDRVVAGDVAVHRLAELLLARDLK
+SEGRTA
+>KBS0714_MOLHKGIG_00867
+---------------------MSDPRTVAVLGAGSWGSAFARVLGLSTSPESARASEIVM
+WSRRAEVAEAITERHENPEYLPGITLPTCVRAVTDAAEAVRGAGVVVVAVPAQHVRETLR
+TVRADLAPDAVVVSLVKGLERGTDARMSQVCAEELGLSPDRFAVVSGPNLALEIARGEPT
+ATVVASASRATAERIAALTAGRTFRPYTNTDVVGVEIGGVVKNVIALAVGICDGQGLGDN
+SKASVITRGLAETTRLAVALGGDTDTMAGLAGLGDLVATCASPLSRNRTAGRHIGTGLSA
+EEAVAAMSQTAEGIKSVSAIVHAARAHGVEMPISELMDRVVAGDVAVDRLAELLLARDLK
+SEGRTA
+>KD337_NAFOICDF_01962
+MSPAPSAGPEPAFASASAGDRAGDPTRVAVLGAGSWGTAFACVLGSSTSPAGRRAREVVV
+WSRRAEVARAITEDHANPEYLPDVALPECVRAVTDAREAVAEAGVVVVAVPAQQARTVLE
+GLADALAPDAIAVSLMKGLERGTDARPSQVCQEALGIGPERFAVLSGPNLALEIARGEPT
+ATVVASASRATADRVAALTAGPTFRPYTNGDVVGVEIGGIVKNVIALAVGICDGQGLGDN
+SKASVITRGLAETTRLAVALGGEASTLAGLAGLGDLVATCASPLSRNRSAGRLMGTGLSA
+DEAVAAMKQTAEGIKSVSAVVHVARAHGVEMPISEAMDRVVAGTLDVDRLAGLLLARDLK
+SEGRHA
+>SA211_MHAAABBN_00589
+---------------------MSDPRTVAVLGAGSWGSAFARVLGLSTSPESARASEIVM
+WSRRAEVAEAITERHENPEYLPGITLPTCVRAVTDAAEAVRGAGVVVVAVPAQHVRETLH
+AVRADLAPDAVVVSLVKGLERGTDARMSQVCAEELGLSPDRFAVVSGPNLALEIARGEPT
+ATVVASASRATAERIAALTAGRTFRPYTNTDVVGVEIGGVVKNVIALAVGICDGQGLGDN
+SKASVITRGLAETTRLAVALGGDPATMAGLAGLGDLVATCASPLSRNRTAGRHIGTGLSA
+EEAVAAMSQTAEGIKSVSAIVHAARAHGVEMPISELMDRVVAGDVAVDRLAELLLARDLK
+SEGRTA
+>TT9_LFPAFLNI_00826
+---------------------MSDPRTVAVLGAGSWGSAFARVLGLSTSPEPARASEIVM
+WSRRAEVAEAITERHENPEYLPGITLPTCVRAVTDAAEAVRGAGVVVVAVPAQHVRETLR
+TVRADLAPDAVVVSLVKGLERGTDARMSQVCAEELGLSPDRFAVVSGPNLALEIARGEPT
+ATVVASASRATAERIAALTAGRTFRPYTNTDVVGVEIGGVVKNVIALAVGICDGQGLGDN
+SKASVITRGLAETTRLAVALGGDPATMAGLAGLGDLVATCASPLSRNRTAGRHIGTGLSA
+EEAVAAMSQTAEGIKSVSAIVHAARAHGVEMPISELMDRVVAGDVAVDRLAELLLARDLK
+SEGRTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001412.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001412.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d720104d067a1406aa718b1f7f95a253d10e23e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001412.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_02072
+--MTSETTRPRTLAEKVWDEHVVVRGEGEGSSRTPDLLYIDLHLVHEVTSPQAFEGLRLA
+GRPVRRPDLTIATEDHNTPTLEIDKPIADPTSRTQIETLRANAAEFGVRLHPLGDAEQGI
+VHVVGPQLGLTQPGLTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLPLKPFKTMA
+ITVDGTLRPGVTAKDVILAVIAKIGTGGGQGFVLEYRGEAIRSLSMEGRMTICNMSIEAG
+ARAGMVAPDETTFAYLKGRPHAPEGADWDAAVEHWRTLATDEGAEFDAEVVIDADELEPF
+VTWGTNPGQGVSLNGAVPAPEDFDDPVAQESARKALGYMDLTPGTPMKEVAVDTVFMGSC
+TNSRIEDLRAFAEVVKGRKKAEGLRVMVVPGSARVRLQAMDEGLDRVFEDFGAEWRFAGC
+SMCLGMNPDQLAPGERCASTSNRNFEGRQGKGGRTHLVSPVVAAATAVLGRLASPSDLPA
+LTPQEA
+>KBS0714_MOLHKGIG_00863
+--MTTATTRPRTLAEKVWDEHVVVRGEGEGASRTPDLLYIDLHLVHEVTSPQAFEGLRLA
+GRPVRRPDLTIATEDHNTPTLDIDQPIADATSRTQIETLRANCAEFGVRLHPLGDAEQGI
+VHVVGPQLGLTQPGLTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLPLKPFKTMA
+VTVDGTLRPGVTAKDIILAVIAKIGTGGGQGFVLEYRGEAIRNLSMEGRMTICNMSIEAG
+ARAGMVAPDETTFAYLKGRPHAPEGDDWDAAVEHWRTLATDEGAEFDAEVVIDADTLEPF
+VTWGTNPGQGVSLNDTVPAPEDFADPVAQEAARKALSYMDLAPGTPMKQVEVDTVFMGSC
+TNSRIEDLRAFAEVVRGRRKAEGLRVMVVPGSARVRLQAMDEGLDRVFEDFGAEWRFAGC
+SMCLGMNPDQLSPGERCASTSNRNFEGRQGKGGRTHLVSPVVAAATAVLGRLASPSDLPA
+LTPQEA
+>KD337_NAFOICDF_01966
+MSTQTQTPRPRTLAEKVWDEHVVVRGEGEGARRTPDLLYIDLHLVHEVTSPQAFDGLRLA
+DRPVARPELTIATEDHNTPTLEIDRPIADETSRVQIETLRANAEEFGVRLHSLGDREQGI
+VHVVGPQLGLTQPGLTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLRLKPFRTMA
+ITVDGTLRPGVTAKDVILAVIAKIGTGGGQGYVLEYRGEAIRSLSMEGRMTLCNMSIEAG
+ARAGMVAPDDTTFEYLKGRPHAPQGADWDAAVEHWRTLATDEGAEFDAEVVIDADTLEPF
+VTWGTNPGQGVSLNDAVPAPEDFSDPAAQEAARKALSYMDLTPGTPMKDVAVDTVFMGSC
+TNSRIEDLRAFAEVVKGRTKADGLRVMVVPGSARVRLQAMDEGLDKVFEDFGAEWRFAGC
+SMCLGMNPDQLAPGERCASTSNRNFEGRQGKGGRTHLVSPLVAAATAVLGRLASPSDLPA
+LENQEA
+>SA211_MHAAABBN_00585
+--MTTATTRPRTLAEKVWDEHVVVRGEGEGASRTPDLLYIDLHLVHEVTSPQAFEGLRLA
+GRPVRRPDLTIATEDHNTPTLDIDQPIADPTSRTQIETLRANCAEFGVRLHPLGDAEQGI
+VHVVGPQLGLTQPGLTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLPLKPFKTMA
+VTVDGTLRPGVTAKDIILAVIAKIGTGGGQGFVLEYRGEAIRNLSMEGRMTICNMSIEAG
+ARAGMVAPDETTFAYLKGRPHAPEGADWDAAVEHWRTLATDEGAEFDAEVVIDADTLEPF
+VTWGTNPGQGVSLNDTVPAPEDFTDPVAQEAARKALSYMDLAPGTPMKQVEVDTVFMGSC
+TNSRIEDLRAFAEVVRGRRKAEGLRVMVVPGSARVRLQAMDEGLDRVFEDFGAEWRFAGC
+SMCLGMNPDQLAPGERCASTSNRNFEGRQGKGGRTHLVSPVVAAATAVLGRLASPSDLPA
+LTLQEA
+>TT9_LFPAFLNI_00822
+--MTTATTRPRTLAEKVWDEHVVVRGEGEGASRTPDLLYIDLHLVHEVTSPQAFEGLRLA
+GRPVRRPDLTIATEDHNTPTLDIDQPIADATSRTQIETLRANCAEFGVRLHPLGDAEQGI
+VHVVGPQLGLTQPGLTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLPLKPFKTMA
+VTVDGTLRPGVTAKDIILAVIAKIGTGGGQGFVLEYRGEAIRNLSMEGRMTICNMSIEAG
+ARAGMVAPDETTFAYLKGRPHAPEGDDWDAAVEHWRTLATDEGAEFDAEVVIDADTLEPF
+VTWGTNPGQGVSLNDTVPAPEDFADPVAQEAARKALSYMDLAPGTPMKQVEVDTVFMGSC
+TNSRIEDLRAFAEVVRGRRKAEGLRVMVVPGSARVRLQAMDEGLDRVFEDFGAEWRFAGC
+SMCLGMNPDQLSPGERCASTSNRNFEGRQGKGGRTHLVSPVVAAATAVLGRLASPSDLPA
+LTPQEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001413.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001413.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6825687a2d5199cfeea38b0109ecbf72e7c11088
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001413.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02073
+MTAEPARAQADDDVLGPSLHRHPSGVGVVDKSVAILDALESGPATLAQLVTATGIARPTL
+HRLAAALTHHRLVGKDLQGRYVLGTRLAELASAAGEDRLTTASGPVLLWLRDATGESAQV
+FRRQADSRVCVASAERPWGLRDTIPVGARMSMKAGSAAQVLLAWEDHERLVEGLAGAVFT
+PTVLAAVRRRGWAQSLAEREPGVASVSAPVRGPSGRVIAAVSISGPLERLSRQPGRNHAD
+AVVAAATRLTELIRAGEA
+>KBS0714_MOLHKGIG_00862
+MTTEPVRPPTEDDLIGPSLHRHPSGVGVVDKSVAILDALESGPATLAQLVIATGIARPTL
+HRLAAALTHHRMVGKDLQGRYVLGTRLAELASAAGEDRLTTASGPVLLWLRDATGESAQV
+FRRQADSRVCVASAERPWGLRDTIPVGARMSMKAGSAAQVLLAWEDHERLVEGLAGAVFT
+PTVLAAVRRRGWAQSLAEREPGVASVSAPVRGPSGRVIAAVSISGPLERLSRQPGRLHAD
+AVVSAATRLTELIRAGEA
+>KD337_NAFOICDF_01967
+MTTTPLPDAGAD--IGPALHVHPSGVGVVDKSVAILDALESGPATLAQLVTATGIARPTL
+HRLAAALTHHRLVAKDLQGRYVLGSRLAELASAAGEDRLTSAAGPVLQWLRDACGESAQV
+FRRQADSRVCVASAERPWGLRDTIPVGTRMSMKAGSAAQVLLAWEDNERLVDGLVGAVFT
+PTVLAAVRRRGWAQSLAEREPGVASVSAPVRGPNGKVIAALSISGPLERLSRQPGRLHAG
+SVVAAADRLTELIRAGEA
+>SA211_MHAAABBN_00584
+MTTEPVRPPTEDDLIGPSLHRHPSGVGVVDKSVAILDALESGPATLAQLVIATGIARPTL
+HRLAAALTHHRMVGKDLQGRYVLGTRLAELASAAGEDRLTTASGPVLLWLRDATGESAQV
+FRRQADSRVCVASAERPWGLRDTIPVGARMSMKAGSAAQVLLAWEDHERLVEGLAGAVFT
+PTVLAAVRRRGWAQSLAEREPGVASVSAPVRGPSGRVIAAVSISGPLERLSRQPGRLHAD
+AVVSAATRLTELIRAGEA
+>TT9_LFPAFLNI_00821
+MTTEPVRPPTEDDLIGPSLHRHPSGVGVVDKSVAILDALESGPATLAQLVTATGIARPTL
+HRLAAALTHHRMVGKDLQGRYVLGTRLAELASAAGEDRLTTASGPVLLWLRDATGESAQV
+FRRQADSRVCVASAERPWGLRDTIPVGARMSMKAGSAAQVLLAWEDHERLVEGLAGAVFT
+PTVLAAVRRRGWAQSLAEREPGVASVSAPVRGPSGRVIAAVSISGPLERLSRQPGRLHAD
+AVVSAATRLTELIRAGEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001414.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001414.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3a9313f3436ae8674bced78c2cbf68dfd2f46fed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001414.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_02074
+M---THPSAPAEQDRA---PRLSVIGTGYLGATHAACMAELGFEVLGVDVDPEKIARLSR
+GEVPFHEPGLPELLRTHVESGRLRFTTDVAEAARWADVHFVGVGTPQKVGESGADLRYVD
+AAVASLAAAIDRDALIVGKSTVPVGTARRLAAMVRRVRAEAGLPGEVELAWNPEFLREGF
+AVKDTLTPDRLVIGTDGPRAEQVLRRVYARQLAADTPWISTDLETAELVKVAANAFLATK
+ISFINAFSEITEAVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSE
+LGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDAGRGEAAAYG-GKTTASGVEVLR
+GARIAVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVHDPEGNANAAARFPRLDYVDS
+LEEAVEGAELTLLLTEWQAFREMDPAAVGALVDARLLIDGRNVLDLAAWAEHGWTVVGLG
+HRFDPAALGA---------
+>KBS0714_MOLHKGIG_00861
+MTETTAPAAPAEQEAA---PRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLAR
+GEVPFHEPGLPELLRTHVASGRLRFTTDVAEAARWADVHFIGVGTPQKVGETAADLSYVD
+AAVASLAAAIDRDALIVGKSTVPVGTARRLAELVRTVRAEAGLPGEVELAWNPEFLREGF
+AVRDTLTPDRLVIGMHGPRAEGILRRVYARQLAADTPWISTDLETAELVKVAANAFLATK
+ISFINAFSEITENVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSE
+LGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDGRIRRAEASG-PAPTPASVQVLN
+GTRIAVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVYDPEGNANAAARFPRLDYVDS
+LEAAVDGAELTLLLTEWRQFREMDPDTVGARVASRLLIDGRNVLDVAAWREHGWDVIGLG
+HRFDPERLLR-------AA
+>KD337_NAFOICDF_01968
+MTETAVVPAAAESEEAPARPRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLAR
+GEVPFHEPGLPELLRAHVASGRLRFTTDVAEAASWADVHFIGVGTPQKVGEAAADLTYVD
+AAVESLARAIDRDALIVGKSTVPVGTARRLAARVAEIRAAEGLPGEVELAWNPEFLREGY
+AVKDTLTPDRLVIGTHGPRAELLLRTVYATPLAAGTPWISTDLETAELVKVAANAFLATK
+ISFINAFSEITETVGGDIGTLADAIGHDGRIGRRFLNAGVGFGGGCLPKDIRALQARVSE
+LGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARQGVVRSAPGGARTAPTPAGVQVLN
+GTRIAVLGVTFKPYSDDVRDSPALDVANRLFTAGAEVAVYDPEGNANAAARFPRLGYVDS
+LDAALQGAELVLLLTEWDEFRQMDPAAAGELVAQRILIDGRNVLDVDAWGEHGWTVLGLG
+HRFDPAALNGGRPGDDAQA
+>SA211_MHAAABBN_00583
+MTETTAPAAPAEQEAA---PRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLAR
+GEVPFHEPGLPELLRTHVASGRLRFTTDVAEAARWADVHFIGVGTPQKVGETAADLSYVD
+AAVASLAAAIDRDALIVGKSTVPVGTARRLAELVRTVRAEAGLPGEVELAWNPEFLREGF
+AVRDTLTPDRLVIGTHGPRAEGILRRVYARQLAADTPWISTDLETAELVKVAANAFLATK
+ISFINAFSEITENVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSE
+LGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDGRIRRAEASG-PAPTPASVQVLN
+GTRIAVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVYDPEGNANAAARFPRLDYVDS
+LEAAVDGAELTLLLTEWRQFREMDPDTVGARVASRLLIDGRNVLDVAAWREHGWDVIGLG
+HRFDPERLLR-------AA
+>TT9_LFPAFLNI_00820
+MTETTAPAAPAEQEAA---PRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLAR
+GEVPFHEPGLPELLRTHVASGRLRFTTDVAEAARWADVHFIGVGTPQKVGETAADLSYVD
+AAVASLAAAIDRDALIVGKSTVPVGTARRLAELVRTVRAEAGLPGEVELAWNPEFLREGF
+AVRDTLTPDRLVIGTHGPRAEGILRRVYARQLAADTPWISTDLETAELVKVAANAFLATK
+ISFINAFSEITENVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSE
+LGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDGRVRRADASG-TAPTPASVQVLN
+GTRIAVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVYDPEGNANAAARFPRLDYVDS
+LEAAVDGAELTLLLTEWRQFREMDPDAVGARVASRLLIDGRNVLDAAAWREHGWDVIGLG
+HRFDPERLLR-------AA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001420.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001420.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a8274c948761cd9f834161661dddb1b5c39c0d28
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001420.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_02085
+MSSHRSAAPAEGMAPRDPARDGGPDGLPPVEAAQRPRWTPLKIAVWVVVALVGGVAWTMLALHRGESINAIWFVFAAVAT
+FAIGYRFYSKYVERMIVRPDDTRATPAEYRADGRDYVATDRRVLYGHHFAAIAGAGPLVGPVLAAQMGYLPGTIWIIVGV
+ILAGAVQDYLVLFFSMRRGGRSLGQMARDELGRIGGTAAIVATLLIMVIITAILALVVVNALGESPWGVFSVALTIPIAI
+FMGLYLRYLRPGRITEVSIIGFVLLMAAIIGGGWVAETDWGVALFTLDRVTIAWGIIIYGFVAAVLPVWLLLAPRDYLST
+FMKIGVIAGLAVAIVIVQPQITAPAISEFASGQTGPVWPGSLFPFLFVTIACGALSGFHALIASGTTPKMVEKERQTRFI
+GYGGMLMEAFVAVMALVAAVSIDRGIYFAMNAPAALTGGTPETAAAWVMSLGLAGVDVTPEQLTALANLVGEDTVVSRTG
+GAPTLAVGLSIIMGQLIGGEALMGFWYHFAIMFEALFILTAVDAGTRVARFMLQDSLGNVAPRFKDTGWRVGAWVCTGIM
+VAAWGAVLIMGVTDPLGGINTLFPLFGIANQLLAAIALAVVLAIVAGRRHFRGLWIVALPLGFITVVTTVASFQKIFSSV
+PAVGYWAQHNAFKDALASGATSFGAAKSVPAMEAVVRNTFIQGTLSIVFLVLALVVITTSVLATIRAFRSTEVVDHADPY
+VPSRRFAPAGLIATAEEKELQRQWDALPADQRPERGH
+>KBS0714_MOLHKGIG_00850
+MSSHRSSAAAEGA----PLPATTPEDLPPTEAAGRPRWTPAKIAVWVAVALLGGVAWTMLALHRGETINAIWFVFAAVAT
+FAIGYRFYSKYVERMIVHPDDTRATPAEYRADGRDYVATDRRVLYGHHFAAIAGAGPLVGPVLAAQMGYLPGTIWIIVGV
+ILAGAVQDYLVLFFSMRRGGRSLGQMARDELGRVGGTAAIVATLLIMVIITAILALVVVNALGESPWGVFSVAMTIPIAL
+FMGVYLRWIRPGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALFTLDRTTIAWAVIIYGFVAAVLPVWLLLAPRDYLST
+FMKIGVIAGLALAIVVVQPRIGTPAFSEFASGQTGPVWPGSLFPFLFVTIACGALSGFHALIASGTTPKMVEKERQTRFI
+GYGGMLMEAFVAVMALVAAVSIDRGIYFAMNAPAALTGGTPETAAAWVMSLGLAGVDVTPEQLTALANLVGEDTVVSRTG
+GAPTLAVGLSIIMGQLIGGEALMGFWYHFAIMFEALFILTAVDAGTRVARFMLQDSLGNVVPRFKDTGWRVGAWVCTGIM
+VAAWGAVLIMGVTDPLGGINTLFPLFGIANQLLAAIALAVVLAIVAGRRHFRGLWIVALPLGFITVVTTVASFQKIFSSV
+PAVGYWAQHNAFKDALASGATSFGAAKSVPAMEAVVRNTFIQGTLSIVFLVLALVVITTSVLATVRAFRGTEVIDHQDPY
+VPSQRFAPAGLFATAEEKELQAQWDALPAEKQPVRGH
+>KD337_NAFOICDF_01985
+MSSTRSVIPTGGS----APHDARPDGLPPVEAPHEQRWTPARVAVWAVIALLGAVAWTMLALHRGESINAIWFVFAAVST
+FLIGYRFYSKYVERAIVRPDDTRATPAEYNADGRDFVATDRRVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTIWIIVGV
+ILAGAVQDYLVLFFSMRRGGRSLGQMARDELGRIGGTAAIIATLLIMVIITAILALIVVNALGDSPWGVFSVGMTIPIAL
+FMGLYLRYLRPGAITEVSIIGFVLLLAAIIGGGFIAETPWGAALFTLDRVTLAWAVIVYGFVAAVLPVWLLLAPRDYLST
+FMKIGVIAGLAIAIVIVQPRVQAPAFSEFAGGQAGPVWAGSLFPFLFVTIACGALSGFHALIASGTTPKMVEKERQTRFI
+GYGGMLMEAFVAIMALVAAVTIDRGVYFAMNAPTALTGGAVDSAVAWVNGLGLANADLTPDQLTTLANQVGEETVVSRTG
+GAPTLAVGLAQIMGQLIGGDALMGFWYHFAIMFEALFILTAVDAGTRVARFMLQDTLGNVFPKFKDHNWTPGAWLATAVM
+VAAWGAVLVMGVTDPLGGINTLFPLFGIANQLLASIALAVVMAIVAKRRTFKGLWIVALPLAFITVVTTVASLHKIFSPV
+PAVGYWAQHRAFQDALAAGKTSFGAATTVPAMEAVVRNTFVQGTLSVLFLALALIVITSSIVATVRAFRSTEVVDHQDPY
+VPSRRFAPAGLTATPAEKEIQAQWDALPADRQPVRGH
+>SA211_MHAAABBN_00572
+MSSHRSSAPAEGA----PRPATTPEDLPPTEAADRPRWTPVKIAVWVAVALLGGVAWTMLALHRGETINAIWFVFAAVAT
+FAIGYRFYSKYVERMIVHPDDTRATPAEYRADGRDYVATDRRVLYGHHFAAIAGAGPLVGPVLAAQMGYLPGTIWIIVGV
+ILAGAVQDYLVLFFSMRRGGRSLGQMARDELGRVGGTAAIVATLLIMVIITAILALVVVNALGESPWGVFSVAMTIPIAL
+FMGVYLRWIRPGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALFTLDRTTIAWAVIIYGFVAAVLPVWLLLAPRDYLST
+FMKIGVIAGLALAIVVVQPRIGTPAFSEFASGQTGPVWPGSLFPFLFVTIACGALSGFHALIASGTTPKMVEKERQTRFI
+GYGGMLMEAFVAVMALVAAVSIDRGIYFAMNAPAALTGGTPETAADFVMGLGLAGVNLAPGDLTHLADLVGEETVVSRTG
+GAPTLAVGLAHIMGQLVGGDALMGFWYHFAIMFEALFILTAVDAGTRVARFMLQDSLGNVVPRFKDTSWRVGAWVCTAIM
+VAAWGAVLIMGVTDPLGGINTLFPLFGIANQLLAAIALAVVLTIVARRRDFRGLWIVALPLAFITVVTTVASFQKIFSSI
+PAVGYWAQHRAFQDALAAGKTSFGAAKSVPAMEAVVRNTFIQGTLSVVFLVLALIVITTSVLATVRAFRGTEVIDHQDPY
+VPSQRFAPAGLFATAEEKELQRKWDALPADRQPVRGH
+>TT9_LFPAFLNI_00809
+MSSHRSSAPAEGA----PRPATTPEDLPPTEAADRPRWTPVKIAVWVAVALLGGVAWTMLALHRGETINAIWFVFAAVAT
+FAIGYRFYSKYVERMIVHPDDTRATPAEYRADGRDYVATDRRVLYGHHFAAIAGAGPLVGPVLAAQMGYLPGTIWIIVGV
+ILAGAVQDYLVLFFSMRRGGRSLGQMARDELGRVGGTAAIVATLLIMVIITAILALVVVNALGESPWGVFSVAMTIPIAL
+FMGVYLRWIRPGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALFTLDRTTIAWAVIIYGFVAAVLPVWLLLAPRDYLST
+FMKIGVIAGLALAIVVVQPRIGTPAFSEFASGQTGPVWPGSLFPFLFVTIACGALSGFHALIASGTTPKMVEKERQTRFI
+GYGGMLMEAFVAVMALVAAVSIDRGIYFAMNAPAALTGGTPETAADFVMGLGLAGVNLAPGDLTHLADLVGEETVVSRTG
+GAPTLAVGLAHIMGQLVGGDALMGFWYHFAIMFEALFILTAVDAGTRVARFMLQDSLGNVVPRFKDTSWRVGAWVCTAIM
+VAAWGAVLIMGVTDPLGGINTLFPLFGIANQLLAAIALAVVLTIVARRRDFRGLWIVALPLAFITVVTTVASFQKIFSSI
+PAVGYWAQHRAFQDALAAGKTSFGAAKSVPAMEAVVRNTFIQGTLSVVFLVLALIVITTSVLATVRAFRGTEVIDHQDPY
+VPSQRFAPAGLFATAEEKELQRKWDALPADRQPVRGH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001421.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001421.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fb28624b15f8743e036b77a74dcad9a85172e602
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001421.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02086
+MSETVFTRQPHLSPLSEEERVEILQDPGFGKVFTDHMVSIDWTWSEDGGAWHDARVEPYG
+PLSLDPSASVLHYGQEIFEGLKAYRHEDGSVWTFRPEANAARLNRSARRLALPELPEEMF
+LGSLKAQLEADRDWVPTGEGQSLYLRPFMFATEAFLGVRPAKEVRYMVIASPAGNYFGGE
+LKPVTIWVSREYARAGRGGMGAAKTGGNYAASLLPQLEAASKGADQVVFLDQYHDDSIEE
+LGGMNVFFVFDDGRLVTPELTGTILEGVTRSSILQLGRDMGLTVEERRITLAEWAEGVRS
+GAIREVFACGTAAVVTPIGRLLDGDDVIESAGGTEVTLKIRAELEGIQTGRVEDRHGWLH
+RLV
+>KBS0714_MOLHKGIG_00849
+MSETVFTRQPHLSPMSDQQRVEILQDPGFGNVFTDHMVSIDWTWDEDGGAWHDARVEPYG
+PLSLDPAAAVLHYGQEIFEGLKAYRHEDGSVWTFRPEANAARLNRSARRLALPELPEELF
+LGSLRAQLEADRAWVPTGPGQSLYLRPFMFASEAFLGVRPARQVRYMVIASPAGNYFGGE
+LKPVTIWVSRDYARAGKGGTGAAKTGGNYAASLLPQLQAAAKGADQVVFLDQYHDDAIEE
+LGGMNVFFVHADGRLVTPALTGTILEGVTRSSILQLGRDMGLTVEERRVTLAEWAEGVRS
+GEITEVFACGTAAVVTPIGRLLDGDDVIESAGGADVALKIRTELEGIQTGRVEDRHGWLH
+RLV
+>KD337_NAFOICDF_01986
+MSETVFTRQPHLSPMSDQQRVEILQDPGFGNVFTDHMVSIDWTWDEDGGAWHDARVEPYG
+PLSLDPSAAVLHYGQEIFEGLKAYGHEDGSVWTFRPEANAARLNRSARRLALPELPEELF
+LGSLRAQLEADQAWVPTGPGQSLYLRPFMFASEAFLGVRPARQVRYMVIASPAGNYFGGE
+LTPVTIWVSRDYARAGKGGMGAAKTGGNYAASLLPQLQAAAKGADQVVFLDQYHDDAIEE
+LGGMNVFFVHADGRLVTPELTGTILEGVTRSSILQLGRDMGMSVEERRVTLAEWAEGVRT
+GAITEVFACGTAAVVTPIGRLLDGDDVIESTGGTEVAMKIRAELEGIQTGTVEDRYGWMH
+RLV
+>SA211_MHAAABBN_00571
+MSETVFTRQPHLSPMSDQQRVEILQDPGFGNVFTDHMVSIDWTWDEDGGAWHDARVEPYG
+PLSLDPAAAVLHYGQEIFEGLKAYRHEDGSVWTFRPEANAARLNRSARRLALPELPEELF
+LGSLRAQLEADRAWVPTGPGQSLYLRPFMFASEAFLGVRPARQVRYMVIASPAGNYFGGE
+LKPVTIWVSRDYARAGKGGTGAAKTGGNYAASLLPQLQAAAKGADQVVFLDQYHDDAIEE
+LGGMNVFFVHADGRLVTPALTGTILEGVTRSSILQLGRDMGLTVEERRVTLAEWAEGVRS
+GEITEVFACGTAAVVTPIGRLLDGDDVIESAGGTDVTLRIRAELEGIQTGRVEDRHGWLH
+RLV
+>TT9_LFPAFLNI_00808
+MSETVFTRQPHLSPMSDQQRVEILQDPGFGNVFTDHMVSIDWTWDEDGGAWHDARVEPYG
+PLSLDPAAAVLHYGQEIFEGLKAYRHEDGSVWTFRPEANAARLNRSARRLALPELPEELF
+LGSLRAQLEADRAWVPTGPGQSLYLRPFMFASEAFLGVRPARQVRYMVIASPAGNYFGGE
+LKPVTIWVSRDYARAGKGGTGAAKTGGNYAASLLPQLQAAAKGADQVVFLDQYHDDAIEE
+LGGMNVFFVHADGRLVTPALTGTILEGVTRSSILQLGRDMGLTVEERRVTLAEWAEGVRS
+GEITEVFACGTAAVVTPIGRLLDGDDVIESAGGTDVTLRIRAELEGIQTGRVEDRHGWLH
+RLV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001424.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001424.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1ff4e1fbe829866ce404dad81dcc3866caa97dac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001424.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02090
+MSAAQPVVLIAEELSPATVEALGPDFEIRRTDGADRARLLEDLRDVDAVLIRSATRMDAEAIAAAPQLKVIARAGVGLDN
+VDVPAATAAGVMVVNAPTSNIISAAELTCGHILATARNIAAANRSLKAGEWKRSKYTGVELYGKKLGVIGLGRIGALVAE
+RMRAFGMEILAYDPYVTTARAQQLGATLVELDQLLERADFVTIHMPKTPETVGMIGDDQFARMKDTAVVVNVARGGLVDE
+DALARALDSGAIAGAGIDVFSTEPATDLAFFAQDSAVVTPHLGASTAEAQEKAGVAVAGSVRLALSGELVPDAVNVAGGV
+IHEDVRPGLPLAEKLGRVLTSLVGEQSLTAVEVEIAGEIAEHDVSAMRLAALKGVFTDIVSDQVSYVNAPMLAEQRGVEC
+RLTTTPVSESYRNTVTLRAATAQGTQVSVTGTLTGPRQIQKLVGVDRHELEVPLADHLLVFTYEDRPGVIGVLGQALGVQ
+GVNIAGMDVSRDDEGEALAVLTLDGALSGDTATALAAAIGASRVAEVDLSA
+>KBS0714_MOLHKGIG_00834
+MSAAQPVVLIAEELSPATVEALGPDFEIRRTDGADRARLLEDLRDVDAVLIRSATQMDAEAIAAAPQLKVIARAGVGLDN
+VDVPAATEAGVMVVNAPTSNIISAAELTCGHILAAARNIAAAHGSLKAGEWKRSKYTGVELYGKRLGVIGLGRIGALVAE
+RMKAFGMEILAYDPYVTTARAQQLGASLVELDELLERADVVTIHMPKTPETVGMIGDEQFARMKDTAIIVNVARGGLVDE
+DALARALEAGTIGGAGIDVFSSEPATDLAFFAHDSAVVTPHLGASTAEAQEKAGVAVAGSVRLALSGELVPDAVNVAGGA
+IHEDVRPGLPLAEKLGRVLTALVGEQSITAVEVEIAGEISEHDVSAMRLAALKGVFTDIVSDQVSYVNAPVLAEQRGVEC
+RLTTTAVSESYRNTVTVRAATAQGAQTAVTGTLTGPRQVQKLVGVDRHELEVPLADHLLVFAYQDRPGVIGVLGQALGVQ
+GVNIAGMDVSRDDEGAALAVLTLDGALSGDTAATLAAAIGAARAAEVDLSV
+>KD337_NAFOICDF_01989
+MSAAKPVVLIAEELSPATVEALGPDFEIRHTDGADRARLLADLPGVDAVLIRSATTMDAEAIAVAKDLKVIARAGVGLDN
+VEVPAATAAGVMVVNAPTSNIVSAAELTCGHILSVARNIAPANRALKAGEWKRSKYAGVELFEKKLGVIGLGRIGALVAE
+RMKAFGMEILAYDPYISAARAQQLGATLLDLDELLAQSDFITVHMPKTPETVGMISDAQFATMKDTAFIVNVARGGLIDE
+DALDRALESGAIAGAGVDVFSSEPATDLAFFRHDTAVVTPHLGASTAEAQEKAGVAVAKSVRLALAGELVPDAVNVAGGV
+IHEDVRPGLPLAEKLARVLRALAGERSLASVDVEVAGEIAVHDVKALRLAALKGVFTDVVSDQVSYVNAPVLAEQRGVGG
+QLTTAAEAGSYRNTVTVAAVTDEGERLSVTGTLTGPKQVEKLVGVGRHEMEVALAEHMLLFRYADRPGVVGVLGQSLGEQ
+GVNIAGMDVSRDEQGSALAVLTLDAALAPGTAPTLAAAIDADRAAEVNLAD
+>SA211_MHAAABBN_00566
+MSAAQPVVLIAEELSPATVEALGPDFEIRRTDGADRARLLEDLRDVDAVLIRSATRMDAEAIAAAPQLKVIARAGVGLDN
+VDVPAATEAGVMVVNAPTSNIISAAELTCGHILAAARNIAAAHGSLKAGEWKRSKYTGVELYGKRLGVIGLGRIGALVAE
+RMKAFGMEILAYDPYVTTARAQQLGASLVELDELLERADVVTIHMPKTPETVGMIGDEQFARMKDTAIIVNVARGGLVDE
+DALARALEAGTIGGAGIDVFSSEPATDLAFFAHDSAVVTPHLGASTAEAQEKAGVAVAGSVRLALSGELVPDAVNVAGGA
+IHEDVRPGLPLAEKLGRVLTALVGEQSITAVEVEIAGEIAEHDVSAMRLAALKGVFTDIVSDQVSYVNAPVLAEQRGVEC
+RLTTTAVSESYRNTVTVRAATAQGTQTAVTGTLTGPRQVQKLVGVDRHELEVPLADHLLVFAYQDRPGVIGVLGQALGVQ
+GVNIAGMDVSRDDEGAALAVLTLDGALSGDTAATLAAAIGAARAAEVDLSA
+>TT9_LFPAFLNI_00804
+MSAAQPVVLIAEELSPATVEALGPDFEIRRTDGADRARLLEDLRDVDAVLIRSATRMDAEAIAAAPQLKVIARAGVGLDN
+VDVPAATEAGVMVVNAPTSNIISAAELTCGHILAAARNIAAAHGSLKAGEWKRSKYTGVELYGKRLGVIGLGRIGALVAE
+RMKAFGMEILAYDPYVTTARAQQLGASLVELDELLERADVVTIHMPKTPETVGMIGDEQFARMKDTAIIVNVARGGLVDE
+DALARALEAGTIGGAGIDVFSSEPATDLAFFAHDSAVVTPHLGASTAEAQEKAGVAVAGSVRLALSGELVPDAVNVAGGA
+IHEDVRPGLPLAEKLGRVLTALVGEQSITAVEVEIAGEIAEHDVSAMRLAALKGVFTDIVSDQVSYVNAPVLAEQRGVEC
+RLTTTAVSESYRNTVTVRAATAQGTQTAVTGTLTGPRQVQKLVGVDRHELEVPLADHLLVFAYQDRPGVIGVLGQALGVQ
+GVNIAGMDVSRDDEGAALAVLTLDGALSGDTAATLAAAIGAARAAEVDLSA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001428.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001428.fa
new file mode 100644
index 0000000000000000000000000000000000000000..535bb1139c442ed3502f03680e02cb68f257b1c4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001428.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02094
+-------MDTAAS--TPRTPSAAPDMKPRSRDVTDGMERAASRGMLRAVGLGDADFAKPQIGIASSWNEITPCNLSLDRL
+AQAAKEGVHADGGFPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARL
+DLASVFVYAGSTMPGHARLSDGTEKQVTIIDAFEAVGACARGLMSEEDLLRIEKAIVPTEGACGGMYTANTMASVGEALG
+MSLPGSATPPSPDRRRDDFARRSGAAVVNLLRQGITARDIMTKEAFENAIAVTMAFGGSTNAVLHLLAIAREAGVDLSLE
+DFNRVGDRTPHIADLKPFGRYVMTDVDRVGGVPVVMKALLDEGLLHGDALTVTGRTVAENLAELAPDPVDGDVIRTMDRP
+MHPNGGIAILHGSLAPEGAVVKSAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPRGGPGMREMLAITG
+AIKGAGLGKDVLLLTDGRFSGGTTGLCIGHIAPEAADGGPIGLVRDGDRIRVDIAGRTLDVQVAEEELEARRREWTPVPP
+KFTTGVLGKYAKLVHSAAEGAYLG
+>KBS0714_MOLHKGIG_00828
+MLTRLRGMDSAAS--TPSTPSAAPDIKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIGIASSWNEITPCNLSLDRL
+AQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARL
+DLASVFVYAGSIMPGVARLTDGTERQVTIIDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALG
+MSLPGSAAAPSADRRRDAFARRSGKAVVNMLRQGITARDIMTKPAFENAIAVTMAFGGSTNAVLHLLAIAREAGVDLQLS
+DFNRIADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDEGLLHGDTLTVTGKTLAENLAALDPDPVDGKVIRTMDDA
+MHPNGGIAILHGSLAPEGAVVKSAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITG
+AIKGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLLVDEAELAARRESWEPVEP
+KFTTGVLGKYAKLVHSAAEGAYLG
+>KD337_NAFOICDF_01993
+-------MDTSAADRTPQDVVTAPDMKPRSRDVTDGMERTAARGMLRAVGLGDEDFAKPQIGIASSWNEITPCNLSLDRL
+AQASKDGVHAAGGFPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARL
+DLASVFVYAGSIMPGVARLTDGTEKQVTIIDAFEAVGACARGLMSEEDLLRIEKAIAPGEGACGGMYTANTMASIGEALG
+MSLPGSAAAPSADRRRDAFARRSGEAVVNMLRLGITARDVMTKPAFENAIAVTMAFGGSTNAVLHLLAIAREAGVDLQLS
+DFNRIADRTPHIADLKPFGQYVMTDVDRVGGVPVVMKALLDEGLLHGDTLTVTGKTLAENLAALDPDPVDGTVIRTMENA
+LHPNGGIAILHGSLAPEGAVVKSAGFDADVFEGTARVFDRERAAMDALEEGVIQAGDVVVIRYEGPKGGPGMREMLAITG
+AIKGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAADGGPIGLVRDGDRIRVDIASRTLDLLVEEAELEARRTSWQPVPP
+KFTTGVLGKYAKLVHSAAEGAYLG
+>SA211_MHAAABBN_00560
+MLTRLRGMDSAAS--TPSTPSAAPDIKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIGIASSWNEITPCNLSLDRL
+AQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARL
+DLASVFVYAGSIMPGVARLTDGTERQVTIIDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALG
+MSLPGSAAAPSADRRRDAFARRSGKAVVNMLRQGITARDIMTKPAFENAIAVTMAFGGSTNAVLHLLAIAREAGVDLQLS
+DFNRIADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDEGLLHGDTLTVTGKTLAENLAALDPDPVDGKVIRTMDDA
+MHPNGGIAILHGSLAPEGAVVKSAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITG
+AIKGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLLVDEAELAARRESWEPVEP
+KFTTGVLGKYAKLVHSAAEGAYLG
+>TT9_LFPAFLNI_00797
+MLTRLRGMDSAAS--TPSTPSAAPDIKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIGIASSWNEITPCNLSLDRL
+AQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARL
+DLASVFVYAGSIMPGVARLTDGTERQVTIIDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALG
+MSLPGSAAAPSADRRRDAFARRSGEAVVKMIRQGITARDIMTKPAFENAIAVTMAFGGSTNAVLHLLAIAREAGVDLQLS
+DFNRIADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDEGLLHGDTLTVTGKTLAENLAALDPDPVDGKVIRTMDDA
+MHPNGGIAILHGSLAPEGAVVKSAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITG
+AIKGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLLVDEAELAARRESWKPVEP
+KFTTGVLGKYAKLVHSAAEGAYLG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001430.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001430.fa
new file mode 100644
index 0000000000000000000000000000000000000000..89397db5358158e2a2ac532dacb558a7c917ffc1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001430.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02097
+MSDTTQ--NRLQPGDIAPSFTLQDQDGRPVSLRDSAGKSTIVYFYPAASTPGCTTQACDF
+RDSLASLTAAGYVVLGVSPDPIGKIIRFAQKEGLTFSLLSDEDHAVAEAYGAWGEKKNYG
+RTYEGLIRSTVVVGPDGRVTHAQYNVKATGHVARLRRTLGLDEA
+>KBS0714_MOLHKGIG_00825
+MTDTTQ--HRLQPGDTAPAFTLQDQEGRPVSLRDSAGKHTIVYFYPAASTPGCTTQACDF
+RDSLASLTAAGYVVLGISPDPIGKIIRFAEQEGLTFPLLSDEDHAVAEAYGAWGEKKNYG
+RTFEGLIRSTIVVGPDGKVTHAQYNVKATGHVARLRRTLGLDEA
+>KD337_NAFOICDF_01996
+MTENTAAPARLSPGDVAPEFTLQDQDGRPVSLRDSAGKSTIVYFYPAASTPGCTTQACDF
+RDSLASLTAAGYRVLGISPDPIGKIIRFAQNEGLTFSLLSDEDHAVAAAYGAWGEKKNYG
+RTSEGLIRSTVVVGPDGKVTLAQYNVKATGHVARLRRELGLDD-
+>SA211_MHAAABBN_00557
+MTDTTQ--HRLQPGDTAPAFTLQDQEGRPVSLRDSAGKHTIVYFYPAASTPGCTTQACDF
+RDSLASLTAAGYVVLGISPDPIGKIIRFAEQEGLTFPLLSDEDHAVAEAYGAWGEKKNYG
+RTFEGLIRSTIVVGPDGKVTHAQYNVKATGHVARLRRTLGLDEA
+>TT9_LFPAFLNI_00794
+MTDTTQ--HRLQPGDTAPAFTLQDQEGRPVSLRDSAGKHTIVYFYPAASTPGCTTQACDF
+RDSLASLTAAGYVVLGISPDPIGRIIRFAEQEGLTFPLLSDEDHAVAEAYGAWGEKKNYG
+RTFEGLIRSTIVVGPDGKVTHAQYNVKATGHVARLRRTLGLDEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001431.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001431.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c702a9f354e69d3012ecf2b66bf6add609008e7d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001431.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02107
+MQPSRRALLGAGLGALGLGLGGCAGTPTPAPSAS-GTAPATPSGPS-RLLVVGAPGRPFTRDSARAWDSESFRIIRQVLE
+TLLGVDPDTGAPTPRLAERHEVSADGRVHAFHLVPGLVFDDGEPCDADAVVANIRRWAQAPAPVEGSVPMPSSFVSAFGG
+HEGEEGSVYAGVEARGAHEVRLRLTSPLRHLAAALSSPAFAISSPASWERTVPVDGVETVTPAGTGPYRWATEAEVAELS
+RDQPDGADVAYLVPSASHRGEEPAVRPVVVHPWGRATTRLRELRRGTADVIDVVAPGQLRPLVEAGTQVLPRDPLAVLYV
+GMNLDHPRIRSQYLRQAIAYAVDRPRIAASDVFLEGTRLAHDLVPPALGVGDEEARRYDVNPAQARRLVELSGYDGEELE
+FLYPAGTSSPSLPEPERVYAMVAQDLGAIGLHITPVPVPADHDYLRAVVSRPTRALHLMGRNGAYRDPHAFLEPFARSWR
+AETGYRNPRVIQDVDAAASEQDDEARRGLFRRVVRAMALDLPALPLVYPISALATGPRVASYPTSPQLDEPFARVRLTEG
+>KBS0714_MOLHKGIG_00823
+MQPTRRAFLGGGLGLLGLGVAGC----TTSPAAP-SSAAPSSSGPG-RLLVVGAPARALTRDPARALDVESFRLIRQVFE
+TLLGVDADTGAPTPRLAERHEESDGGRLHTFHLVSGVVFDDGEPCDAAAVVANIERWAAAPAPVDGTVSPPSSFVSAFGG
+YAGDADSAFAGVEAHGELEVRLRLHSPRRHLAAALASPAFAISSPASWDRTVDVDGSEVTTPAGTGPYRWADAAETAELT
+RAHPGASGATFLVPSARHRGSDPAAHPVAVQAWGRASVRLRELRRGTADVIDVVAPGQLRPLVEAGTQVLPRDPLGVLYV
+GMNLDHPLVHAQYLRQAIAYAVDRPRIAGSDVFLEGTRLAHDLVPPSLGVGDEEARRYDVNPGRAREFLGLAGYDGEPLE
+FLYPAGTARPSLPEPERVYAMVARDLGAVGMHIVPVPVPEDQDYLHAVVSRPTRALHLMGRTGDYRDPHAFLEPFARSGR
+AETGYRNPRVVEDVDAAAAETDDDTRRALFRRVVRAMALDLPALPLVYPISALATGPRVASYPTSPQLDEPFSRVRLTEG
+>KD337_NAFOICDF_01998
+MDASRRSVLSLGLAGLGLGLSAC----GAGRATPASSSSSAASAPAVRPLVLGAPGRPLTRTPALAWDTESLRLIAQVLE
+PLLGVDQDTGAPTPLLAE-HRESEDGLTHTFVLTPDLRFSDGVACDADAVVANLRRWSEG-EPAE-AVAMPSPFVAAFGG
+LAGEDSTAFRDATAADARTVRLRLRRRLRHLPAALASPRFAISSPASWKRTQDVDGAPVATPAGTGPHRWADPTESVEVL
+EPLGGTGPATVLVPNEHARAGLPTPPTAVVHSWGRASTRLRELRRGNADVIDVVAPGQLRPLVEAGTQVLPRDPFSVLYL
+GMNLDHPLLHSLYLRQAVAYAVDRPRLASSDVFLQGTALAHDLVPPALGVAVEDGPRYDVDPARARRLLELAGYRGEPLE
+FLYPSGHAWPSLPEPERVFAMVSSDLGVVGLRVVPVPVPADQDYRRAVLGRRGRALHLMGRDGHYRDPHAFLEPFARSAR
+TETGYVNAALTADVDAAASETDDERRRELHRRAGRTLLLDLPALPLVHPISALATGPRVASYPTSPQLDEPLAQVRLADS
+>SA211_MHAAABBN_00555
+MQPTRRAFLGGGLGLLGLGVAGC----TTSPAAP-SSAAPSSSGPG-RLLVVGAPARALTRDPARALDVESFRLIRQVFE
+TLLGVDADTGAPTPRLAERHEESDGGRLHTFHLVSGVVFDDGEPCDAAAVVANIERWAAAPAPVDGTVSPPSSFVSAFGG
+YAGDADSAFAGVEAHGELEVRLRLHSPRRHLAAALASPAFAISSPASWDRTVDVDGSEVTTPAGTGPYRWADAAETAELT
+RAHPGASGATFLVPSARHRGSDPAAHPVAVQAWGRASVRLRELRRGTADVIDVVAPGQLRPLVEAGTQVLPRDPLGVLYV
+GMNLDHPLVHAQYLRQAIAYAVDRPRIAGSDVFLEGTRLAHDLVPPSLGVGDEEARRYDVNPGRAREFLGLAGYDGEPLE
+FLYPAGTARPSLPEPERVYAMVARDLGAVGMHIVPVPVPEDQDYLHAVVSRPTRALHLMGRTGDYRDPHAFLEPFARSGR
+AETGYRNPRVVEDVDAAAAETDDDTRRALFRRVVRAMALDLPALPLVYPISALATGPRVASYPTSPQLDEPFSRVRLTEG
+>TT9_LFPAFLNI_00792
+MQPTRRAFLGGGLGLLGLGVAGC----TTSPAVP-SSAAPSSSGPG-RLLVVGAPARALTRDPARALDVESFRLIRQVFE
+TLLGVDADTGAPTPRLAERHEESDGGRLHTFHLVSGVVFDDGEPCDAAAVVANIERWASAPAPVDGTVAPPSSFVSAFGG
+YAGDADSAFAGVEARGELEVRLRLHSPRRHLAAALASPAFAISSPASWDRTVDVDGSEVTTPAGTGPYRWADAAETAELT
+RAHPGASGATILVPSARHRGSDPAAYPVAVQAWGRASVRLRELRRGSADVIDVVAPGQLRPLVEAGTQVLPRDPLGVLYV
+GMNLDHPRVRSQYLRQAIAYAVDRPRIAGSDVFLEGTRLAHDLVPPSLGVGDEEARRYDVNPGRAREFLHLAGYDGEPLE
+FLYPAGTARPSLPEPERVYAMVARDLGAVGMHIVPVPVPEDQDYLHAVVSRPTRALHLMGRTGDYRDPHAFLEPFARSGR
+AETGYRNPRVVEDVDAAAAETDDDARRALFRRVVRAMALDLPALPLVYPISALATGPRVASYPTSPQLDEPFSRVRLTEG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001432.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001432.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5e0df2881625d97e07aacb22c25d15323687e6bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001432.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02108
+---------------------MPTPSSATTHDVVLIGGGIMSATLGVLLQRLEPTWSIALYENLDQAGLESSDPWNNAGT
+GHAALCELNYAPLGKDGTVDVTKALGINEQFWTSRQFWSSLVKDGTLQDPKTFINPLPHMSFVWGDAHADYLRTRYEAMS
+AQPLFAQMEHTEDPATIAEWAPLLIEGREDAGRIAASRVVGGTDVDFGSLTRQLVTAMAGAGADVRFGHKVTGLSRGTDG
+RWEVSVKNKAAGTEVVDRARFVFVGAGGGALSLLQKSGIPEAKGFGGFPVSGQFLRCTDESVVNRHMAKVYGQAAVGAPP
+MSVPHLDTRFVNGKRSLLFGPYAGFSTNFLKTGSYLDLPLSIRPHNLTTMLDVAKDNMDLTKYLVAEVVKSQNKKVESLK
+EFYPEAEGGDWELITAGQRVQVMKRKGRFGGVLQFGTEVVTHGDGSIGGLLGASPGASTAAPIMVKLLERCFPAKMAGWD
+GALKELIPSLGRTLNDDPALLAEVSASTDAALKLA
+>KBS0714_MOLHKGIG_00822
+---------------------MPTTSSTATHDVVLIGGGIMSATLGVLLQKLEPTWSIALYESLDQAGLESSDPWNNAGT
+GHAALCELNYSPMDKNGRVDVTKALGINEQFWTTRQFWSSLVADGTLKDPKSFINPLPHMSFVWGDDHADYLRTRYEAMS
+AQPLFAGMEHSEDPEQIRAWAPLLIEGREPGQRLAASRNTGGTDVDFGSLTRQLITAMAGAGAEVRFGHKVTGLTRGTDG
+RWEVKVKNKAAGSELVDRARFVFVGAGGGALPLLQKSGIPEAKGFGGFPVSGQFLRCTDESVVNQHMAKVYGQAAVGAPP
+MSVPHLDTRFVNGKRSLLFGPYAGFSTNFLKTGSYLDLPLSVRPHNLSTMLDVAKDNMDLTKYLVTEVLKSRDKKIDALH
+EFYPEADGGEWELITAGQRVQVMKRKGRFGGVLQFGTEVVTHADGSLGGLLGASPGASTAAPIMVKLLERCFPAKMAGWD
+GTLKELIPSLGHTLNDDPALLDEVRTVTDAALKLA
+>KD337_NAFOICDF_01999
+MWIPPDGVRRCTILALEHQEHIVSTPTSTTHDVVLIGGGIMSATLGVMLQKLEPSWSIALYENLDQSGLESSDPWNNAGT
+GHAALCELNYSPLGKDGKVDTAKAKGINEQFWITRQFWSSLVKDGTLADPKNFINPLPHMSFVVGDAHADYLKTRYEAMS
+AEPLFADMEHTEDPDVIGEWAPLLMDGRTGTERLAASRVPTGTDVDFGSLTRQLVTALAAGGADVRFGHKVTGLSRGTDG
+RWDVTVKNKAAGTEVRDRARFVFVGAGGGALGLLQNSGIPEIKGFGGFPVSGQFLRCTDEKVVNQHMAKVYGQAAVGAPP
+MSVPHLDTRFVNGKRSLLFGPYAGFSTNFLKSGSYLDLPLSIRPHNLPTMLNVAKDNMDLTKYLVTEVLKSNEKKVDTLH
+EFYPAADGSEWELITAGQRVQVMKKKGKLGGVLQFGTEVVSHADGSIAGLLGASPGASTAAPIMVKLLERCFPAKMAGWD
+AALKDMIPTLGRTLNDDPSLLAEVRSATDAALQLG
+>SA211_MHAAABBN_00554
+---------------------MPTTSSTATHDVVLIGGGIMSATLGVLLQKLEPTWSIALYESLDQAGLESSDPWNNAGT
+GHAALCELNYSPMDKNGRVDVTKALGINEQFWTTRQFWSSLVADGTLKDPKSFINPLPHMSFVWGDDHADYLRTRYEAMS
+AQPLFAGMEHSEDPEQIRAWAPLLIEGREPGQRLAASRNTGGTDVDFGSLTRQLITAMAGAGAEVRFGHKVTGLTRGTDG
+RWEVKVKNKAAGSELVDRARFVFVGAGGGALPLLQKSGIPEAKGFGGFPVSGQFLRCTDESVVNQHMAKVYGQAAVGAPP
+MSVPHLDTRFVNGKRSLLFGPYAGFSTNFLKTGSYLDLPLSVRPHNLSTMLDVAKDNMDLTKYLVTEVLKSRDKKIDALH
+EFYPEADGGEWELITAGQRVQVMKRKGRFGGVLQFGTEVVTHADGSLGGLLGASPGASTAAPIMVKLLERCFPAKMAGWD
+GTLKELIPSLGHTLNDDPALLDEVRTVTDAALKLA
+>TT9_LFPAFLNI_00791
+---------------------MPTTSSTATHDVVLIGGGIMSATLGVLLQKLEPTWSIALYESLDQAGLESSDPWNNAGT
+GHAALCELNYSPMDKNGRVDVTKALGINEQFWTTRQFWSSLVADGTLKDPKSFINPLPHMSFVWGDDHADYLRTRYETMS
+AQPLFAGMEHSEDPEQIRAWAPLLIEGRASGQRLAASRNTGGTDVDFGSLTRQLITAMAGAGAEVRFGHKVTGLTRGTDG
+RWEVKVKNKAAGSELVDRARFVFVGAGGGALPLLQKSGIPEAKGFGGFPVSGQFLRCTDESVVNQHMAKVYGQAAVGAPP
+MSVPHLDTRFVNGKRSLLFGPYAGFSTNFLKTGSYLDLPLSVRPHNLSTMLDVAKDNMDLTKYLVTEVLKSRDKKIDALH
+EFYPEADGAEWELITAGQRVQVMKRKGRFGGVLQFGTEVVTHADGSLGGLLGASPGASTAAPIMVKLLERCFPAKMAGWD
+GTLKELIPSLGHTLNDDPALLDEVRTVTDAALKLA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001434.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001434.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1d020fac20b4273a59714879bea2b4c9abaf3e60
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001434.fa
@@ -0,0 +1,70 @@
+>AS2_ACLBLIBL_02110
+MRIHRMRLQGIGPYAEAQDVDMDRLNDAGLFLLDGPTGAGKSTVLAALCYALYGSVPGGRSPESLVTTLRPPGAVVPEVL
+VEFTVQGRRFEVVRSPRHERLKKRRSASGKDTTPTPAAVSLREHVDGAWQEPLTRNDEVGVQVADVMHLDAAQFMQVVML
+PQGRFAEFLTARSDERQRLLRRLFGTQRFDGVEEHLKAEAERLGSRAAADAKVAASAREQLREAVAAELGEDWHAPEPFP
+A--TDEELVERTAERTREAVDAARAGRDAAAAEEAAARGTQAELRATGEALAAAAAWTERERAHREGAEAAAGDRTAVAA
+HERAGRVLGAADRSESARAAEDRAREADGTAQAAAAEDPLSAGWLEQARRDAAETPADDAAETSADAAALPRDAVALAER
+AVEEVVRAVRDRAAAERLEETERTEAARRTQIVAEREAAEAERSGREEGLAAVREAVEAASARLGAQADVDRRVAEAEQG
+LAAAREAERHALAADAADRAREAARTGRDAAAQHRLGLLRSRYEQAAADLAADLEDGTPCAVCGSPEHPDPAPRVGTAVT
+EADVAAAEEGLAAAEAVLADAETARTAAHERVRASSAAAGGRTPAQAEEALAAARTEHAELAAVRKALAADRRRLRALET
+ERDEAAAAETARTAEDARLQEAARQRHERLLELRAGIERARGDAPDLDARGALVRAARGRLEALAGAVEVRERAVAVAAD
+ADRALAAALREQEFEDVGAARAARLPAEDAAARTARVRAWDDEQARLAELAQSDAVRRGRELQDQQATAPTPEDLEAAAA
+RLLEAERSRREQDEALGRRTAVAAAVERQAALLRGVLDRSAALLAEHERVTGLLALVRGGGENRLKMPLASYVLAGRLEE
+VAAAATERLLAMTDGRYSIEYSDDSAGRGNKGLELVVRDHYVDETRHPSTLSGGETFMASLALALGLADTVQAEAGGVEL
+DTLFVDEGFGSLDSDTLDDVLDVVDGLRSGGRTVGLVSHVERMKQEIPVRLAVTKEREGSSLAVHVDA
+>KBS0714_MOLHKGIG_00820
+MRIHRMRLEGLGPYAQAQDVDFDRLNAGGLFLLDGPTGAGKSTVLAALCFALYGTVPGGRSAESLVTTLREPGAVIPEVQ
+VEFTVQGRRFEVVRSPKHERPRRRRSAAGGATVTTQATVSLRERVAGEWTAPLTRADEVGQQIAAVLHLDAEQFMQVVLL
+PQGQFAQFLTAKSDERRALLRRLFGTQRFDGVEEHLRVETARLDTAVAVDADVARTARAQLAEALHEALGPDWHAPEPSP
+D--TDDRLLALAAERAGRAHEDARADLATARAAEQRARVTARELETRGRDLAAAEAWASRRRDHDAEAETAAARRRAVDA
+HERAGRVLAAAQRATAAADAAGTASETVTEALAHVEDEPTAAAWLAAARADGA-----------ADAPA-SRQALGEAER
+AAEAVARAVQDRARMGELEQEAAAAAERRAEIGRDRAALVESRPEREAAVAAHRAAVERGTERLGAREAVDRAVSEAAAR
+RTAAEAAAARAVEAETAARAHREAQERRREAAERHVGLLRARYEQAASELAERLVPGEPCAVCGSPEHPAPAATADTAVT
+EADVRDAEQARTAADRAATDAETALRAAEQTLRTAREAAAGLAPEAAREALERAEAERAALDQAAKDLAADRRRLTAAEK
+TLAGADETAAALAAEDGRLAEAAAHRAARLTELRDAVEAARGDAETLDARRDQVTAARRVLAALAAAQDEDARARAVADE
+TDQALTAALAEQHFDDVDAARAARLEETEAAARTAAVQEWHAERARLAELEASEPVRRGRALAEAGVEPPTEEQTRAAAE
+ALAAAEAASSSRATAVGRLDSLVATVRRQSAALTEVLERSAGLIAEHTRVRGLLDLVRGGGENLLKMPLTSYVLAGRLEE
+VAAAATERLLAMTDQRYSIEYSDAVGGRGNKGLELVIRDHYVDETRHPATLSGGETFMASLALALGLADTVQAEAGGIEL
+DTLFVDEGFGSLDADTLDDVLDVVDTLRTGGRTVGLVSHVERMRQEIGVRLEVRKDRRGSSLAVHDGA
+>KD337_NAFOICDF_02001
+MRIHRMRLEGIGPYAEPQDLDLDPLNDAGLFLLDGPTGAGKSTVLAALCFALYGSVPGGRTPESLVTTLRPPGAVVPQVL
+VEFTVQGRRFEVLRSPRHARPKKR----GGGTTATQASVSLRERVDGAWTAPLTRADEVGRQVAEVLRLDAAQFMQVVSL
+PQGRFAEFLTARSDDRQRLLRRLFGTQRFDGVEDRLKECAEALGTRVAADAAEAAGARAQLLEQARLELGEDWHAPDPAP
+EEGEDERLVELTRTRADAALAEARTAQQAADAAEAAARAAQDRLTADTEALRALAAWEGREREHRQAADHVAADRSAVAL
+HERASHVLGAATRAEQTRAAHASTAERARAAAEAVAADALAAAWLDEA----------------EDADA-ARR---RADR
+ETDALARAVRDRDALTRLEAEGTQADAERERLEDEARSAREKGKRRAAQIAELHDTVDAAAARLGAEDEVARRLAEATER
+AAAAGQAAERAVAQERARAARDERRDAQRGAAQARLDLLRSRFEQAAAELAAGLEDGSPCPVCGSAEHPDPAPRADGAVT
+EADVAAADRALEAADAALAEAEQALAAASEEHRAARERAGGQDVAAAEEALSAVRAEHEALAAARTALATDRRALARRES
+EQRTADEAATARTAALARLSEAQARRTERAAELTAAVAAAQGDAADLDARTAHVRTATRALSALVEAGDAAARAAAVAED
+AAQALAGALAEQDFADVAAARAAALPPDDAAARAARVRSWDVEEARLAEAAASEPLVRGRALREAGTSEPTAEEFAAAQE
+TLREATAARTARAAVVGRREALVASLERQARRLRAVLERSSELLAEHERATGLLALVRGQGENRLKMPLASYVLAGRLEE
+VAAAATERLLAMTDRRYSIEYSDEATGRGNKGLELVIRDHYVDETRHPSTLSGGETFMASLALALGLADTVQAEAGGVEL
+DTLFVDEGFGSLDADTLDDVLDVVDGLRAGGRTVGLVSHVERMKQEIPVRLEVTKSRAGSTLAIHDGG
+>SA211_MHAAABBN_00552
+MRIHRMRLEGLGPYAQAQDVDFDRLNAAGLFLLDGPTGAGKSTVLAALCFALYGTVPGGRSAESLVTTLREPGAVIPEVQ
+VEFTVQGRRFEVVRSPKHERPRRRRSAAGGATVTTQATVSLRERVAGEWTAPLTRADEVGQQIAAVLHLDAEQFIQVVLL
+PQGQFAQFLTAKSDERRVLLRRLFGTQRFDGVEEHLRVETARLDTAVAVDADVARTARAQLAEALHEALGPDWHAPEPSP
+D--TDDRLLALAAERAGRAHEDARADLATARAAEQRARVTARELETRGRDLAAAEAWASRRRDHDAEAETAAARRRAVDA
+HERAGRVLAAAQRASAAADAAGTASEAVTEALAHVEDEPTAAAWLAAARADGA-----------ADAPA-SRQALGEAER
+AAEAVARAVRDRDRMRELEQEAAAAAERRAEIDRDRAALVESRPEREAAVAAHRAVVERGTERLGAREAVDRAVSEAAAR
+RTAAEAAAARAVEVETAARAHREAQERRREAAERHVGLLRARYEQAASELAERLVPGEPCAVCGSPEHPAPAATADTAVT
+EADVRDAEQARTAADRAATDAETALRAAEQTLRSAGEAAAGLAPEAAREALERAETERAALDQAAKDLAADRRRLTAAEK
+TLAGADETAAALAAEDGRLAEAAAHRAARLTELRDAVEAARGDAETLDARRDQVTAARRVLAALAAAQDEDARARAVADE
+TGQALTATLAEQRFDDVDAARAARLEETEAADRTAAVQEWDAERARLAELEASEPVRRGRALAEAGVEPPTEEQTRAAAE
+ALAAAEAASSSRATAVGRLDSLVATVRRQSAALTEVLERSAGLIAEHTRVRGLLDLVRGGGENLLKMPLTSYVLAGRLEE
+VAAAATERLLAMTDQRYSIEYSDAVGGRGNKGLELVIRDHYVDETRHPATLSGGETFMASLALALGLADTVQAEAGGIEL
+DTLFVDEGFGSLDADTLDDVLDVVDTLRTGGRTVGLVSHVERMRQEIGVRLEVRKDRRGSSLAVHDGA
+>TT9_LFPAFLNI_00789
+MRIHRMRLEGLGPYAQAQDVDFDRLNAGGLFLLDGPTGAGKSTVLAALCFALYGTVPGGRSAESLVTTLREPGAVIPEVQ
+VEFTVQGRRFEVVRSPKHERPRRRRSAAGGATVTTQATVSLRERVDGEWTAPLTRADEVGQQIAAVLHLDAEQFMQVVLL
+PQGQFAQFLTAKSDERRVLLRRLFGTQRFDGVEEHLRVETARLDTAVAVDADVARTARAQLAEALHEALGPDWHAPEPSP
+D--TDDRLLGLAAERAGRAHEDARADLATARAAEQRARVTARELETRGRDLAAAEAWASRRRDHDAEAETAAARRRAVDA
+HERAGRVLAAAQRATAAADAAGTASETVTEALAHVEDEPTAAAWLAAARADGA-----------ADAPA-SRQALGEAER
+AAEAVARAVQDRARMGELEQEAAAAAERRAEIGRDRAALVESRPEREAAVAAHRAAVERGTERLGAREAVDRAVSEAAAR
+RTAAEAAAARAVEAETAARAHREAQERRREAAERHVGLLRARYEQAASELAERLVPGEPCAVCGSPEHPAPAATADTTVT
+EADVRDAEQARTAADRAATDAETALRAAEQTLRTAREAAAGLAPEAAREALERAEAERAALDQAAKDLAADRRRLTAAEK
+TLAGADETAAALAAEDGRLAEAAAHRAARLTELRDAVEAARGDAETLDARRDQVTAARRVLAALAAAQDEDARARAVADE
+TDQALTAALAEQHFDDVDAARAARLEETEAAARTAAVQEWHAERARLAELEASEPVRRGRALAEAGVEPPTEEQTRAAAE
+ALAAAEAASSSRATAVGRLDSLVATVRRQSAALTEVLERSAGLIAEHTRVRGLLDLVRGGGENLLKMPLTSYVLAGRLEE
+VAAAATERLLAMTDQRYSIEYSDAVGGRGNKGLELVIRDHYVDETRHPATLSGGETFMASLALALGLADTVQAEAGGIEL
+DTLFVDEGFGSLDADTLDDVLDVVDTLRTGGRTVGLVSHVERMRQEIGVRLEVRKDRRGSSLAVHDGA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001437.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001437.fa
new file mode 100644
index 0000000000000000000000000000000000000000..74dd34330124495a38b8dffc1954923d8429be9c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001437.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02113
+MSGVLAPV--PGLDFTAIDFETANGFRGSPCALGAVRVRDGVMVERAEWLIRPPVGFDRF
+DPRNVRIHGITEDRVLDAARFADVYDELAGFVGADVLAAHNAGFDVGVIESGLEVSGRDV
+PRLDFVCTLVLARRVYDLASYALPSAAREAGFAPGPHHDALADAEACAAILVDVARRVLG
+TEAGD-----GAAVAPAGARGLPEPFDVPRLMRAQGLTVNTLAQRAAGEGPESKATRQAR
+RAQGVFDARVPLKDERAMPDFLRWPDEGTNPVPNPDADPGHPLHGQTVVFTGGIGMSRQT
+AKVRAARLGAQTANRVGAATTMLVVGDGFEAADL----------DRPAPAPGTREAVTT-
+-ALAHRKTRDALRRRERGQHISLVSEGEFLQMLDGNWPDAAR
+>KBS0714_MOLHKGIG_00817
+MSGGRVPV--PGLDFTAIDFETANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDRF
+DPRNVRIHGITEDRVLDAPRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDV
+PGLEFVCTLVLARRVYDLPSYALPSAAREAGFTPGRHHDALADAEACAAILVDIGRRVLG
+APPADADVLPGLTDAPAG-RG------VDRLMRAQGLGVSVLAPRAAGAGAESKATRQAR
+RTEGVFDARVPLRDERAMPDFMRWPDEGVNPLPNPAADPGHPLFGQTVVFTGGIGMSRQR
+AKTRAAAHGAQTANRVGAATTMLVVGDGFEAADL----------HRPRAEDGAPQAVTT-
+-ALAHRKTRDALRRRDRG------------------------
+>KD337_NAFOICDF_02004
+MTAGIAPVRQPGLDFTAIDFETANGFRGSACQLGAVRVRDGLPASRAVWLMRPPAGFDRF
+DPRNVRIHGIHADRVVDAPRFAEVYDAFAAFAGDDVLVAHNAGFDLGVIESGLEVSGRDV
+PAHDYACTLTLARRIYDLPSYSLPSAAREAGFVPGRHHDALADAEACAAILVDLARRV--
+CPPGEAT--------------------VDALLASQGLRRSRLTARAAGTGRESRATRQAR
+TMPGLFDATIPLADDRTLPDLMRWPDEGVNPEPAADADPGHPLYGQVVVFTGGIGMSRQE
+AKNRAAQRGAATANRVNGRTTMLVVGDGVDPAELVGAPEVHGVVVDPGATDPAGRGVDPG
+GAVTHRKTREALQRRAKGQAIALVSEAEFLQMVDGAWPAGAR
+>SA211_MHAAABBN_00549
+MSGGRAPV--PGLDFTAIDFETANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDRF
+DPRNVRIHGITEDRVLDAPRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDV
+PGLEFVCTLVLARRVYDLPSYALPSAAREAGFTPGRHHDALADAEACAAILVDIGRRVLG
+APPADAEILPGLTDAPAG-RG------VDRLMRAQGLGVSVLAPRAAGSGAESKATRQAR
+RTEGVFDARVPLRDERAMPDFMRWPDEGVNPPPNPTADPGHPLFGQTVVFTGGIGMSRQS
+AKTRAAAHGAQTANRVGAATTMLVVGDGFEAADL----------HRPRAEDGAPQAVTT-
+-ALAHRKTRDALRRRDRGQAIALVSEGEFLQMLDGNWPDAAR
+>TT9_LFPAFLNI_00786
+MSGGRVPV--PGLDFTAIDFETANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDRF
+DPRNVRIHGITEDRVLDAPRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDV
+PGLEFVCTLVLARRVYDLPSYALPSAAREAGFTPGRHHDALADAEACAAILVDIGRRVLG
+APPADAEILPGLTDAPAG-RG------VDRLMRAQGLSVSVLAPRAAGSGAESKATRQAR
+RTEGVFDARVPLRDERAMPDFMRWPDEGVNPLPNPAADPGHPLFGQTVVFTGGIGMSRQS
+AKTRAAAHGAQTANRVGAATTMLVVGDGFEAADL----------HRPRAEDGAPQAVTT-
+-ALAHRKTRDALRRRDRGQAIALVSEGEFLQMLDGNWPDAAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001441.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001441.fa
new file mode 100644
index 0000000000000000000000000000000000000000..091b53a50eaee342aad236c9058048632730b3a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001441.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02117
+MSAPPQ-ARPEVSASSPIGVFDSGVGGLTVARAIMDQLPHESILYVGDTAHAPYGPRPIA
+QVRALALGIMDELVDAGVKALVIACNSASAAVLRDARERYTGRHGIPVVEVIQPAVRRAV
+AATRSGRIGVIGTQATVGSRAYDDSFSAAPHLQVTSAACPRFVEFVEAGITTGPELLATA
+QEYTEPLRAAGVDTLVLGCTHYPLLTGALSLVMGEDVTLVSSAEETAKDLYRELVRLGLE
+HPHSAAGSGQDTRHRFAATGDPEHFQALARRFLGPEVGAVRRLDTVRERYPTAALAQLTP
+DLIARLGAEQERET--
+>KBS0714_MOLHKGIG_00813
+MSG----QRAAVDAAAPIGVFDSGVGGLTVARAIMDQLPHESILYVGDTEHSPYGPRPIA
+EVRALALAIMDELVARGVKALVIACNSASAAVLRDARERYTGGHGIPVIEVIQPAVRRAV
+AATRTGRIGVIGTEATVGSRAYEDSFSAAPHLEITSVACPRFVEFVEAGITTGPELLETA
+REYTAPLRAAGVDTLVLGCTHYPLLTGALSLVMGEDVTLVSSAEETAKDLYRELVRLGLE
+HPHSAAGSGQATRHRFAATGDPDHFQALARRFLGPEVESVRRLETIGAPRPAAAPVPTRS
+TAFVPLGAEQEGVT--
+>KD337_NAFOICDF_02008
+MSATADTAQTGAGPSSPIGVFDSGVGGLTVARAIMDQLPHEPIIYVGDTAHSPYGPRPIA
+QVRALALGVMDELVEAGVKALVIACNSASAAVLRDARERYTGRLGIPVVEVIQPAVRRAV
+AATRNGRVGVIGTQATVGSRAYEDSFSAAPHLQITSVACPRFVEFVEAGITTGPELLETA
+EEYVAPLKAAGVDTMVLGCTHYPLLTGALSLVMGEDVTLVSSAEETAKDLYRALVRHGLE
+HPHSAAGSAAAPEHRFAATGDPEHFAALARRFLGPEVGPVRQIQEIRERYPTAALTALTP
+DVLARLRAEMEEDGAR
+>SA211_MHAAABBN_00545
+MSG----QRAAVDAAAPIGVFDSGVGGLTVARAIMDQLPHESILYVGDTEHSPYGPRPIA
+EVRALALAIMDELVARGVKALVIACNSASAAVLRDARERYTGGHGIPVIEVIQPAVRRAV
+AATRTGRIGVIGTEATVGSRAYEDSFSAAPHLEITSVACPRFVEFVEAGITTGPELLETA
+REYTAPLRAAGVDTLVLGCTHYPLLTGALSLVMGEDVTLVSSAEETAKDLYRELVRLGLE
+HPHSAAGSGQATRHRFAATGDPDHFQALARRFLGPEVESVRRLETIGAPRPAAAPVPTRS
+AASVRPGPEQEGVT--
+>TT9_LFPAFLNI_00782
+MSG----QRAAVDAAAPIGVFDSGVGGLTVARAIMDQLPHESILYVGDTEHSPYGPRPIA
+EVRALALAIMDELVARGVKALVIACNSASAAVLRDARERYTGGHGIPVIEVIQPAVRRAV
+AATRTGRIGVIGTEATVGSRAYEDSFSAAPHLEITSVACPRFVEFVEAGITTGPELLETA
+REYTAPLRAAGVDTLVLGCTHYPLLTGALSLVMGEDVTLVSSAEETAKDLYRELVRLGLE
+HPHSAAGSGQATRHRFAATGDPDHFQALARRFLGPEVESVRRLETIGAPRPAAAPVPTRS
+AASVRPGPEQEGVT--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001442.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001442.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f88806f6cedfa635ada048c126dcc6f6b35fa876
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001442.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02118
+MAERFRWTRRGYTAQLEKPEVRLLRGLVKDVITLLEGRRRNVL-SEADDLPADAPGAPEP
+SADVAPVPQGPEAG---------AGPAAGLDEA---DAAFWELVSGLHLSQDRVPHRAAP
+ADPAVARLLPEAMPQADAQERGAHRALTEDALSEGKLADARLALELLRSTRVEVPHHQAP
+AFGRALNDVRLVLAARLGVETEEDAERVHAVDDWRSAEDVESTMALLYNFTTWLLETLMT
+EMLSELPEGADEDAPGADEAGDDA
+>KBS0714_MOLHKGIG_00812
+MAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEAD--PAEAPAA---
+-EDGVDTPEDPPAAPPSVSAAQDAGPVAGLDAS---DAAFWGLVSGLHLSQDPEPQRSAP
+TDPAVARLLPDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHDQAP
+AFGRALNDVRLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMT
+EMLSELPEGADESAPGAGDAEDEQ
+>KD337_NAFOICDF_02009
+MAQRFRWTRRGYVAELEDAELRLLRGLVKDVVTLLENRQDEVAPPGSD--AG--------
+------TAEDAPEAGAEPVADARPGDAVGPGEETPHDAAFWALVGGLDLVADPVAERSAP
+EDPAVARLLPDAMPHAEPAERARQRALTEDALTAAKLADARRALEALRSVRVTVPHEHAV
+SFGRALNDVRLVLAARLGIETEQDAARVHAVDDWRDAQDVEATMALLYNFTTWLQETLMA
+EMLSELPL---EGAAGPDEEE-RA
+>SA211_MHAAABBN_00544
+MAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEAD--PAEAPAA---
+-EDGVDTPEDPPAAPPSVSAAQDAGPVAGLDAS---DAAFWGLVSGLHLSQDPEPQRSAP
+TDPAVARLLPDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHNQAP
+AFGRALNDVRLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMT
+EMLSELPEGSDESAPGAGDAEGEQ
+>TT9_LFPAFLNI_00781
+MAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEAD--PAEAPAA---
+-EDGVDTPEDPPAAPPSVSAAQDAGPVAGLDAS---DAAFWGLVSGLHLSQDPEPQRSAP
+TDPAVARLLPDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHDQAP
+AFGRALNDVRLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMT
+EMLSELPEGSDESAPGAGDAEGEQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001444.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001444.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e1d2e1a1c63ce180b8776d9451f676f8b4100e0d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001444.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02120
+MSQNPVTSAPQTPDDWRIPTALMTDHYELTMLQAALKAGTAHRRSRFELFTRRLPSGRRY
+GVVAGVGRALEGLSRFRFDTPELDFLADTTALDDATLAWLADYEFTGDIVGYAEGEAYFP
+HSPLLQVESTFAEACILETYLLSIYNYDSAVASAASRMTAVADGRPCAEMGSRRTHEESA
+VAAARAAAIAGFTATSNLEAGRRYGIPTVGTAAHSFTLLHDSERAAFEAQVAALGADTSL
+LVDTYDVEQGVRTAVEVAGPALRNVRVDSGDLVIQAHRVRELLDELGNTQTGIMVTSDLD
+EYAIAALRSAPVSSYGVGTRLVTGSGAPTASMVYKLVARQDDDGTWVDVAKASSGKASRG
+GRKEAARRRDRRGRATAEVVGVNRGAAPDADDRPLLHRFVHAGELAAGWTGPEAVTRAAE
+RHAASLRELPATVGRLQPGDPAIPTIFLED
+>KBS0714_MOLHKGIG_00810
+MSQNPVPSAPRTADDWQIPTALMTDHYELTMLQAALKAGTAHRRSRFELFTRRLPSGRRY
+GVVAGVGRALEGLSRFRFDTPELDFLADTTALDDATLAWLADYEFTGDIVGYAEGEAYFP
+HSPLLQVESTFAEACILETYLLSIYNYDSAVASAASRMTAVADGRPCAEMGSRRTHEESA
+VAAARAAAIAGFTATSNLEAGRRYGIPTVGTAAHSFTLLHDSERAAFEAQVAALGADTTL
+LVDTYDVEQGVRTAVEVAGPALRNVRVDSGDLVIQAHRVRELLDELGNTETGIMVTSDLD
+EYAIAALRSAPVSSYGVGTRLVTGSGAPTASMVYKLVARQDDDGTWVDVAKASSGKASRG
+GRKEAARRRDPRGRATAEVIGVNRGAAPDADDRPLLHRFVHAGELAEGWTGPEAVTRAAE
+RHAASLRELPASVGRLQPGDPAIPTIFLED
+>KD337_NAFOICDF_02011
+MTQNASAPAP-SAAPWHVPTSLMTDHYELTMLCAARRAGTAERRSRFELFSRRLPDGRRY
+GVVAGTGRILEGLSRFRFSTAEVDFLADHSVVDDATLQWLADFRFSGDITGYAEGEVYFP
+HSPVLQVESTFAEACILETYLLSILNYDSAVASAASRMASAAQGRPCIEMGARRIHEEAA
+VAAARAAVIAGFAATSNLEAGRRYGVRTVGTAAHSFTLLHDSERAAFEAQVAALGRDTTL
+LVDTYDVEQGVRTAVEVAGRALRNVRLDSGDLVQQAHEVRELLDSLGNTETGIMVTSDLD
+EYAIASLRSAPVASYGVGTRLVTGSGAPTASMVYKLVARQDDDGTWVDVAKASSGKASHG
+GRKDAVRRRDARGRAVAELVGVNRAPAADADDRPLLHTFVKDGELQEGWTGPEAVTRAAE
+RHAASLAELPRAAARLQPGEALIPTIFQED
+>SA211_MHAAABBN_00542
+MSQNPVPSAPRTADDWQIPTALMTDHYELTMLQAALKAGTAHRRSRFELFTRRLPSGRRY
+GVVAGVGRALEGLSRFRFDTPELDFLADTTALDDATLAWLADYEFTGDIVGYAEGEAYFP
+HSPLLQVESTFAEACILETYLLSIYNYDSAVASAASRMTAVADGRPCAEMGSRRTHEESA
+VAAARAAAIAGFTATSNLEAGRRYGIPTVGTAAHSFTLLHDSERAAFEAQVAALGADTTL
+LVDTYDVEQGVRTAVEVAGPALRNVRVDSGDLVIQAHRVRELLDELGNTETGIMVTSDLD
+EYAIAALRSAPVSSYGVGTRLVTGSGAPTASMVYKLVARQDDDGTWVDVAKASSGKASRG
+GRKEAARRRDPRGRATAEVIGVNRGAAPDADDRPLLHRFVHAGELAEGWTGPEAVTRAAE
+RHAASLRELPASVGRLQPGDPAIPTIFLED
+>TT9_LFPAFLNI_00779
+MSQNPVPSAPRTADDWQIPTALMTDHYELTMLQAALKAGTAHRRSRFELFTRRLPSGRRY
+GVVAGVGRALEGLSRFRFDTPELDFLADTTALDDATLAWLADYEFTGDIVGYAEGEAYFP
+HSPLLQVESTFAEACILETYLLSIYNYDSAVASAASRMTAVADGRPCAEMGSRRTHEESA
+VAAARAAAIAGFTATSNLEAGRRYGIPTVGTAAHSFTLLHDSERAAFEAQVAALGADTTL
+LVDTYDVEQGVRTAVEVAGPALRNVRVDSGDLVIQAHRVRELLDELGNTETGIMVTSDLD
+EYAIAALRSAPVSSYGVGTRLVTGSGAPTASMVYKLVARQDDDGTWVDVAKASSGKASRG
+GRKEAARRRDPRGRATAEVIGVNRGAAPDADDRPLLHRFVHAGELAEGWTGPEAVTRAAE
+RHAASLRELPASVGRLQPGDPAIPTIFLED
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001445.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001445.fa
new file mode 100644
index 0000000000000000000000000000000000000000..593d64779020a2f68f314e36f8030950f79e7895
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001445.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02121
+MENLNRALVIVDVQNDFCEGGALGVTGGAAVAAGVSEHLAEHADAYAAVAATRDWHVDPG
+THFAAAT----GAEPDFRTTWPVHCVAGTAGAELHPDLDIEHL--DAEFLKGLHTDAYSG
+FDGALGEPDAVPTGAAGERPSGTVGPYGATAVAAAAVESDAPGLDEWLREQGVDAITVVG
+IATDHCVRATVLDALDAGYEVTVLTDLVAGVDEAASQAALHEMEAAGADLELSEGR
+>KBS0714_MOLHKGIG_00809
+MENLNRALVIVDVQNDFCEGGALGVTGGAAVAAGVSEHLAEHADAYAAVAATRDWHVDPG
+THFAAAT----GAEPDFRTTWPVHCVAGTAGAELHPDLDAEHL--DAEFLKGLHTDAYSG
+FDGALGEPDAVPTGAAGERPSGTVGPYGATAVAAAAVEAGAPGLDEWLREQGVDAITVVG
+IATDHCVRATVLDALDAGYEVTVLTDLVAGVDEAAAQAALHEMEAAGAILATS---
+>KD337_NAFOICDF_02012
+MSEQNRALVIVDVQNDFCEGGALAVAGGADVAAAIADHVNEAREDYAAVVTTRDWHVDPV
+GHFAAASLEDRDAEPDYVRTWPVHCVAGTPGAELHPGLSAEDLEIDAEFLKGQHSDGYSG
+FDGHAGDPDAV---RSGDEARAAAGPYGATQGAAHAADGGL-GLDEWLREQDVDALTVVG
+LATDHCVRATVLDGLEAGYEVTVRTDLVAGVDDAAGEAALHEMEAAGALLRAGD--
+>SA211_MHAAABBN_00541
+MENLNRALVIVDVQNDFCEGGALGVTGGAAVAAGVSEHLAEHADAYASVAATRDWHVDPG
+THFAAAT----GAEPDFRTTWPVHCVAGTAGAELHPDLDAEHL--DAEFLKGLHTDAYSG
+FDGALGEPDAVPTGAAGERPSGTVGPYGATAVAAAAVESGAPGLDEWLREQGVDAITVVG
+IATDHCVRATVLDALDAGYEVTVLTDLVAGVDEAAAQAALHEMEAAGAILATS---
+>TT9_LFPAFLNI_00778
+MENLNRALVIVDVQNDFCEGGALGVTGGAAVAAGVSEHLAEHADAYASVAATRDWHVDPG
+THFAAAT----GAEPDFRTTWPVHCVAGTAGAELHPDLDAEHL--DAEFLKGLHTDAYSG
+FDGALGEPDAVPTGAAGERPSGTVGPYGATAVAAAAVESGAPGLDEWLREQGVDAITVVG
+IATDHCVRATVLDALDAGYEVTVLTDLVAGVDEAAAQAALHEMEAAGAILATS---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001449.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001449.fa
new file mode 100644
index 0000000000000000000000000000000000000000..609fc18c21c5108f23ad4385b0c649e48003a74d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001449.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02126
+MSEHPAEPHRTAPSSAEAPHAGPAPAEAPAVVPSAAARRRAVDAPDPDLALVTRGLTKRF
+GDKTALDGLDLDVPAGSFYGVVGPNGAGKTTALSMATGLLRPDLGQAWIHGVDVWAQPLE
+AKRRVGVLADGVRTFDRLTGAQLVTYAGLLHGVDADTVAARTEDLLRVMDLADAGRKLVV
+DYSAGMTKKISLAAAMVHAPDVLVLDEPFEAVDPVSAANIRDILHDYVGRGGTVIVSSHV
+MDLVQRMCSHVAVIAGGTLRAAGTLEEVRAGRDLEDRFVDLVGGRHEQEGLAWL
+>KBS0714_MOLHKGIG_00804
+M----------------TPH---ASEPAPTHL-AAATRRRAVDAPDPDLALVTRGLTQRF
+GDKLALDALDLDVPAGSFFGVVGPNGAGKTTALSMATGLLRPDHGRAWIHGVDVWEQPLE
+AKRRVGVLADGVRTFDRLTGAQLVTYAGLLHGLDADTVAERTADLLRVMDLEDAGRTLVA
+DYSAGMTKKVSLAAAMVHAPDLLVLDEPFEAVDPVSAANIRDILHSYVERGGTVIVSSHV
+MDLVQRMCTHVAVIAAGTLRAAGTLEEVRDGRDLEDRFVELVGGRHGSEGLAWL
+>KD337_NAFOICDF_02019
+M--------------------------------------RAQDAPDPNLALVTRGLAKRF
+GEKVALAGLDLEVPAGSFFGVVGPNGAGKTTALSMATGMLRPDAGRVWIHGVDVWEQPLE
+AKRRVGVLADGVRTFDRLTGAQLITYAGLLHGLDRDTVDVRTADLLRVMDLEEAGRKLVV
+DYSAGMTKKVNLAAAMVHAPDVLVLDEPFEAVDPVSAANIRDILHDYVGRGGTVIVSSHV
+MDLVQRMCSHVAVIAGGVLRAAGTLEEVRAGRDLEERFVDLVGGRHTGEGLAWL
+>SA211_MHAAABBN_00535
+M----------------TPH---APEPAPAHL-AAAARRRAADAPDPDLALVTRGLTQRF
+GDKLALDALDLDVPAGSFFGVVGPNGAGKTTALSMATGLLRPDHGRAWIHGVDVWEQPLE
+AKRRVGVLADGVRTFDRLTGTQLVTYAGLLHGLDADTVAERTADLLRVMDLEDAGRKLVA
+DYSAGMTKKVSLAAAMVHAPDLLVLDEPFEAVDPVSAANIRDILHSYVERGGTVIVSSHV
+MDLVQRMCTHVAVIAAGTLRAAGTLEEVRDGRDLEDRFVDLVGGRHGSEGLAWL
+>TT9_LFPAFLNI_00771
+M----------------TPH---APEPAPAHL-AAAARRRAVDAPDPDLAFVTRGLTQRF
+GDKLALDALDLDVPAGSFFGVVGPNGAGKTTALSMATGLLRPDHGRAWIHGVDVWEQPLE
+AKRRVGVLADGVRTFDRLTGAQLVTYAGLLHGLDADTVAERTTDLLRVMDLEDAGRKLVA
+DYSAGMTKKVSLAAAMVHAPDLLVLDEPFEAVDPVSAANIRDILHSYVERGGTVIVSSHV
+MDLVQRMCTHVAVIAAGTLRAADTLEEVRDGRDLEDRFVDLVGGRHGSEGLAWL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001452.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001452.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f6fb600a3fd3c1280d31b72ccf617ab6029e041a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001452.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02129
+-----------------------------------MADPLKELLGLDPGYSHQSGGDGGW
+HVRQIPSWRAVKDYTCPGCGRVIRQGQAHLVAWRSDWIMGDEDAGADRRHWHPVCWRTRV
+GR
+>KBS0714_MOLHKGIG_00801
+---MPRSNRPRRSSAPRRSERGASGASRRSRPSPGRSDPLQELLGLDAGYSRQSGSDGGW
+HVRQIPAWRAVKDYTCPGCGRVIRQGQAHLVAWRADWIMGDEDAGEDRRHWHPVCWRTRP
+SR
+>KD337_NAFOICDF_02022
+MVTMPRSNRPRRSAAPRRGEGAAGGASRRSRPGPGRADPLEELLGMDPGYSHQSGSDGGW
+HVRDIPSWRAVKDYTCPGCGRTIRQGQAHLVAWRSDWIMGDEDAGADRRHWHPTCWRTRA
+SR
+>SA211_MHAAABBN_00532
+---MPRSNRPRRSSAPRRSERGASGVSRRSRPSPGRSDPLEELLGLDAGYSRQSGSDGGW
+HVRQIPAWRAVKDYMCPGCGRVIRQGQAHLVAWRADWIMGDEDAGADRRHWHPVCWRTRP
+GR
+>TT9_LFPAFLNI_00768
+---MPRSNRPRRSSAPRRSERGASGASRRSRPSPGRADPLEELLGLDAGYSRQSGSDGGW
+HVRQIPAWRAVKDYTCPGCGQVIRQGQAHLVAWRADWIMGDEDAGADRRHWHPVCWRTRP
+GR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001453.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001453.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c2e080431f788a237f485976e9c65ae84e86cbe2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001453.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02130
+MRLVIARCSVTYEGRLNAHLPPATRLLMVKADGAVLVHSDGGSYKPLNWMSPPATLHTTA
+PTAEQAEQGVVEVWRVQAAKSDDRLMILIEEILADQSHELGADPGLVKDGVEADLQRLLA
+EQIGLLGDGHTLVRREYMTAIGPVDILARDPEGGTVAVELKRRGDIDGVEQLTRYLELMN
+RDPLLAPVRGVFAAQQIKPQARTLAEDRGIRCVTLDYDAMRGVDDAESRLF
+>KBS0714_MOLHKGIG_00800
+MRLVIARCSVTYEGRLNAHLPTATRLLMVKADGSVLVHSDGGSYKPLNWMSPPATLHVEE
+PSPDQADQGVTQVWRVQAKKSDDRLIVLIEEVLADDSHELGVDPGLVKDGVEADLQRLLA
+EQISLLGDGHTLVRREYMTAIGPVDILARDADGGTVAVELKRRGDIDGVEQLTRYLELMN
+RDPLLAPVRGVFAAQQIKPQARTLAEDRGIRCVTLDYDAMRGVDDAESRLF
+>KD337_NAFOICDF_02023
+MRLVIARCSVTYEGRLNAHLPSATRLLMVKADGSVLVHSDGGSYKPLNWMSPPATLHVEE
+PTEEQAAAGVTQVWRVQAKKSDDRLLVLLEEVLADETHELGVDPGLVKDGVEADLQRLLA
+EQIGLLGDGHTLVRREYMTAIGPVDILAKGPGGQTVAVELKRRGDIDGVEQLTRYLDLMN
+RDPLLAPVTGVFAAQQIKPQARTLAEDRGIRCVTLDYDAMRGVDDADARLF
+>SA211_MHAAABBN_00531
+MRLVIARCSVTYEGRLNAHLPTATRLLMVKADGSVLVHSDGGSYKPLNWMSPPATLHVEE
+PSPDQADQGVTQVWRVQAKKSDDRLIVLIEEVLADDSHELGVDPGLVKDGVEADLQRLLA
+EQISLLGDGHTLVRREYMTAIGPVDILARDADGGTVAVELKRRGDIDGVEQLTRYLELMN
+RDPLLAPVRGVFAAQQIKPQARTLAEDRGIRCVTLDYDAMRGVDDAESRLF
+>TT9_LFPAFLNI_00767
+MRLVIARCSVTYEGRLNAHLPTATRLLMVKADGSVLVHSDGGSYKPLNWMSPPATLHVEE
+PFPDQADQGVTQVWRVQAKKSDDRLIVLIEEVLADDSHELGVDPGLVKDGVEADLQRLLA
+EQISLLGDGHTLVRREYMTAIGPVDILARDADGGTVAVELKRRGDIDGVEQLTRYLELMN
+RDPLLAPVRGVFAAQQIKPQARTLAEDRGIRCVTLDYDAMRGVDDAESRLF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001457.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001457.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d40669de9ea4d1069e69b7395821952c76092ea3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001457.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_02134
+MTATITDQGTGTPTGGATGRVSRVIGPVIDAEFPANAMPEIYNALTTEIDLNGQRRTVTF
+EVAQHLGDNMVRAISLQSTDGLVRGTDVVDTGAPISVPVGDAVKGHIFNVLGETLDVETS
+SLNFEERWPIHRAAPNFASLEGSTEMLETGIKVIDLLTPYIKGGKIGLFGGAGVGKTVLI
+QEMITRVARNFGGTSVFAGVGERTREGNDLWVEMDEADVLKDTALVFGQMDEPPGTRLRV
+ALSALTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGVL
+QERITSTRGHSITSMQAVYVPADDYTDPAPANVFAHLDATTNLTRDLASRGLYPAVDPLA
+STSRILDPQYVGQDHYDTAIRVKQILQKNKELQDIIAILGVDELGEEDKITVARARKIEQ
+FLSQNTYTAKQFTGVEGSTVPIKDTVEGFKAIADGDLDHIAEQAFYNVGGLDDVEREWAK
+IQAEG
+>KBS0714_MOLHKGIG_00797
+MTATITDQGTGTPTGGATGRVSRVIGPVIDAEFPANAMPEIYNALTTEIDLNGQRRTVTF
+EVAQHLGDNMVRAISLQSTDGLVRGTDVVDTGAPISVPVGDAVKGHIFNVLGETLDMPTS
+QLQAEDRWPIHRPAPNFASLEGSTEMLETGIKVIDLLTPYIKGGKIGLFGGAGVGKTVLI
+QEMITRVARNFGGTSVFAGVGERTREGNDLWVEMDEADVLKDTALVFGQMDEPPGTRLRV
+ALSALTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGVL
+QERITSTRGHSITSMQAVYVPADDYTDPAPANVFAHLDATTNLTRDLASRGLYPAVDPLA
+STSRILDPQYVGQEHYDVAIRVKQILQKNKELQDIIAILGVDELSEEDKITVGRARKIEQ
+FLSQNTYTAKQFTGVEGSTVPVKDTVEGFKAIADGDLDHVAEQAFYNVGGLDDVEREWAK
+IQAEG
+>KD337_NAFOICDF_02027
+MTATFTDQGTGTPTAGATGRVARVIGPVIDAEFPANAMPEIYNALTATVELAGQTRVVTF
+EVAQHLGDNMVRAISLQSTDGLVRGADVQDTGAPISVPVGDAVKGHLFNVLGETLDMPIS
+ELDVQERWPIHRPAPSFAALEGSTEMLETGIKVIDLLTPYIKGGKIGLFGGAGVGKTVLI
+QEMITRVARNFGGTSVFAGVGERTREGNDLWVEMDEADVLKDTALVFGQMDEPPGTRLRV
+ALSALTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGVL
+QERITSTRGHSITSMQAVYVPADDYTDPAPANVFAHLDATTNLTRDLASRGLYPAVDPLA
+STSRILDPQYVGQEHYDVATRVKQILQKNKELQDIIAILGVDELSEEDKITVSRARKMEQ
+FLSQNTYTAKQFTGVEGSTVPIKDTVEGFKAIADGDLDHVAEQAFYNVGGLDDVEREWAK
+IQAEG
+>SA211_MHAAABBN_00528
+MTATITDQGTGTPTGGATGRVSRVIGPVIDAEFPANAMPEIYNALTTEIDLNGQRRTVTF
+EVAQHLGDNMVRAISLQSTDGLVRGTDVVDTGAPISVPVGDAVKGHIFNVLGETLDMPAS
+QLQAEDRWPIHRPAPNFASLEGSTEMLETGIKVIDLLTPYIKGGKIGLFGGAGVGKTVLI
+QEMITRVARNFGGTSVFAGVGERTREGNDLWVEMEEADVLKDTALVFGQMDEPPGTRLRV
+ALSALTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGVL
+QERITSTRGHSITSMQAVYVPADDYTDPAPANVFAHLDATTNLTRDLASRGLYPAVDPLA
+STSRILDPQYVGQDHYDVAIRVKQILQKNKELQDIIAILGVDELSEEDKITVGRARKIEQ
+FLSQNTYTAKQFTGVEGSTVPVKDTVEGFKAIADGDLDHVAEQAFYNVGGLDDVEREWAK
+IQAEG
+>TT9_LFPAFLNI_00764
+MTATITDQGTGTPTGGATGRVSRVIGPVIDAEFPANAMPEIYNALTTEIDFNGQRRTVTF
+EVAQHLGDNMVRAISLQSTDGLVRGTDVVDTGAPISVPVGDAVKGHIFNVLGETLDMPTS
+QLQAEDRWPIHRPAPNFASLEGSTEMLETGIKVIDLLTPYIKGGKIGLFGGAGVGKTVLI
+QEMITRVARNFGGTSVFAGVGERTREGNDLWVEMDEADVLKDTALVFGQMDEPPGTRLRV
+ALSALTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGVL
+QERITSTRGHSITSMQAVYVPADDYTDPAPANVFAHLDATTNLTRDLASRGLYPAVDPLA
+STSRILDPQYVGQDHYDVAIRVKQILQKNKELQDIIAILGVDELSEEDKITVGRARKIEQ
+FLSQNTYTAKQFTGVEGSTVPVKDTVEGFKAIADGDLDHVAEQAFYNVGGLDDVEREWAK
+IQAEG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001458.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001458.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d715cd8033cb48a47b786a78c63d7d09d4c60b6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001458.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02135
+MGAQIRVYRQKIASTSSMKKIFKAMELIATSRITKARERVNASLPYANAITRAVSAVSSQ
+HDIDHVLTTEPENPTRAAVLILSSDRGLAGAYSANVLRKAEQLLTRLGEEGKDVDVYVVG
+RKAQTYFDFRGREYKQLWTGQTDAPAAERASEIGETLVDAFLTDTAAGGVDEIHIVFTEF
+VSLVKQNPHVVRLLPLEVVEEEVAAPEDVLPLYEYEPDAEEVLDALLPKYIESRIFNAML
+QSAASELANRQRAMKSAGDNASGLIKDYTLLMNNARQAEITQELTELIAGADALNNS
+>KBS0714_MOLHKGIG_00796
+MGAQIRVYRQKIASTSSMKKIFKAMELIATSRITKARERVSASLPYANAITRAVSAVSSQ
+HDIDHVLTTEPENPTRAAVLIMSSDRGLAGAYSANVLRKAEQLLTRLGEEGKDVDVYVVG
+RKAQTYFDFRGRGYKQLWTGQTDAPVAERAAEIGEVLVDAFLTDTADGGVDEIHVVFTEF
+VSLVKQNPHVVRLLPLEVVEEEAATAEDVLPLYEYEPDAEEVLDALLPKYIESRIFNAML
+QSAASELANRQRAMKSAGDNATSLIKDYTLLMNNARQAEITQELTELIAGADALNNS
+>KD337_NAFOICDF_02028
+MGAQIRVYRQKIASTTSMKKIFKAMELIATSRITKARERVNQSLPYANAITRAVTAVSSQ
+HDIDHVLTTEPENPTRAAVLIMSSDRGLAGAYSANVLRKAEQLLTALHEEGKDVDVYVVG
+RKAQTYFDFRGREYKQLWTGQTDAPKAERAQEIGTILVESFLTDTAAGGVDEIHVVFTEF
+VSLVKQNPHVIRLLPLEVVEQDVVSPEEVLPLYEFEPDADEVLDALLPKYIESRIFNAML
+QSAASELANRQRAMKSAGDNASSLIKEFTLRMNNARQAEITQELTELIAGADALNNS
+>SA211_MHAAABBN_00527
+MGAQIRVYRQKIASTSSMKKIFKAMELIATSRITKARERVSASLPYANAITRAVSAVSSQ
+HDIDHVLTTEPENPTRAAVLIMSSDRGLAGAYSANVLRKAEQLLTRLGEEGKDVDVYVVG
+RKAQTYFDFRGRGYKQLWTGQTDAPVAERAAEIGEVLVDAFLTDTADGGVDEIHVVFTEF
+VSLVKQNPHVVRLLPLEVVEEEAATAEDVLPLYEYEPDAEEVLDALLPKYIESRIFNAML
+QSAASELANRQRAMKSAGDNATSLIKDYTLLMNNARQAEITQELTELIAGADALNNS
+>TT9_LFPAFLNI_00763
+MGAQIRVYRQKIASTSSMKKIFKAMELIATSRITKARERVSASLPYANAITRAVSAVSSQ
+HDIDHVLTTEPENPTRAAVLIMSSDRGLAGAYSANVLRKAEQLLTRLGEEGKDVDVYVVG
+RKAQTYFDFRGRGYKKLWTGQTDAPVAERAAEIGEVLVDAFLTDTADGGVDEIHVVFTEF
+VSLVKQNPHVVRLLPLEVVEEEAATAEDVLPLYEYEPDAEEVLDALLPKYIESRIFNAML
+QSAASELANRQRAMKSAGDNATSLIKDYTLLMNNARQAEITQELTELIAGADALNNS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001459.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001459.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8def2d541f8c107ac0848a3e049172e219aa007c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001459.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02136
+-----------MAELTINADDVRNALNDFAASYEPSGTDRTEVGRVISAADGIARVEGLPSVMANELLRFENGIQGLAQN
+LDAREIGVVVLGEFQEIREGMEVQRTGEILSVPVGDGFMGRVVDPLGQPIDDLGPIQAEGRRALELQAPTVTERKSVHEP
+LQTGMKAIDAMIPIGRGQRQLIIGDRQTGKTAIAVDTILNQKANWESGDVDKQVRCVYVAVGQKASTIAGVRATLEEHGA
+LEYTTIVASPASDPAGFKYLAPYAGSAIGQHWMYGGKHVLIIFDDLSKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRL
+LERCAKLSDEMGAGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQVKAMKK
+VSGTLKLDLAQYRDQQAFSMFASDLDPATRRQLARGERLMELLKQPQYSPYPVEEQVVSIWAGSKGHLDEVPVEDVLRFE
+REFIDHLRRRGSVLTDIGSTGKLEDGTVSALESEIAEFKKGFQSSEDGGVHAGHEEHRAIEQDQVAQEQITKQKR
+>KBS0714_MOLHKGIG_00795
+MITKHREQGLQMAELTINADDVRNALNEFAASYEPSGTDRTEVGRVISAADGIARVEGLPSVMANELLRFENGIQGLAQN
+LDTREIGVVVLGEFQEIREGMEVQRTGEILSVPVGDAFLGRVVDPLGQPIDDLGPIEAEGRRALELQAPTVTERKSVHEP
+LQTGMKAIDAMIPIGRGQRQLIIGDRQTGKTAIAVDTILNQKANWESGDVEKQVRCVYVAVGQKASTIAGVRATLEEHGA
+LEYTTIVASPASDPAGFKYLAPYAGSAIGQHWMYGGKHVLIIFDDLSKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRL
+LERCAKLSDEMGAGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQVKAMKK
+VSGTLKLDLAQYRDQQAFSMFASDLDPATRRQLARGERLMELLKQPQYSPYPVEEQVVSIWAGSKGHLDEVPVQDVLRFE
+REFIDHLRRHTSVLTDIASTGKLEDGTVSALESAVAEFSKGFQSSEEGGVRAGHEEHRAIEQDQVAQEQITKQKR
+>KD337_NAFOICDF_02029
+MITKHREQGLQMAELTINADDVRNALNDFAASYEPSDTTRTEVGRVISAADGIARVEGLPSVMANELLRFSNGILGLAQN
+LDAREIGVVVLGEFQDIREGMEVQRTGEILSVPVGDGFLGRVVDPLGHPLDDLGPIEAEGRRALELQAPTVTQRKSVHEP
+LQTGMKAIDAMIPIGRGQRQLIIGDRQTGKTAIAVDTILNQKANWQTGDVDKQVRCVYVAVGQKASTIAAVRSTLEEHGA
+LEYTTIVASPASDPAGFKYLAPYAGSAIGQHWMYGGKHVLIIFDDLSKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRL
+LERCAKLSDEMGAGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQVKAMKK
+VSGTLKLDLAQYRDQQAFSMFASDLDPATRRQLARGERLMELLKQPQYSPYPVEDQVVAIWAGSKGHLDDVAVEDVLRFE
+REFLDHLRRKDVVLGEIASTGKLEDETVSALEREIDAFKKGFQASGHDGVAAGHEEHAAIGQDQVVQEQITKQKR
+>SA211_MHAAABBN_00526
+MITKHREQGLQMAELTINADDVRNALNDFAASYEPSGTDRTEVGRVISAADGIARVEGLPSVMANELLRFENGIQGLAQN
+LDTREIGVVVLGEFQEIREGMEVQRTGEILSVPVGDAFLGRVVDPLGQPIDDLGPIEAEGRRALELQAPTVTERKSVHEP
+LQTGMKAIDAMIPIGRGQRQLIIGDRQTGKTAIAVDTILNQKANWESGDVEKQVRCVYVAVGQKASTIAGVRATLEEHGA
+LEYTTIVASPASDPAGFKYLAPYAGSAIGQHWMYGGKHVLIIFDDLSKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRL
+LERCAKLSDEMGAGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQVKAMKK
+VSGTLKLDLAQYRDQQAFSMFASDLDPATRRQLARGERLMELLKQPQYSPYPVEEQVVSIWTGSKGHLDEVPVQDVLRFE
+REFIDHLRRHTSVLTDIASTGKLEDGTVSALESAVAEFSKGFQSSEDGGVQAGHEEHRAIEQDQVAQEQITKQKR
+>TT9_LFPAFLNI_00762
+MITKHREQGLQMAELTINADDVRNALNDFAASYEPSGTDRTEVGRVISAADGIARVEGLPSVMANELLRFENGIQGLAQN
+LDTREIGVVVLGEFQEIREGMEVQRTGEILSVPVGDAFLGRVVDPLGQPIDDLGPIEAEGRRALELQAPTVTERKSVHEP
+LQTGMKAIDAMIPIGRGQRQLIIGDRQTGKTAIAVDTILNQKANWESGDVEKQVRCVYVAVGQKASTIAGVRATLEEHGA
+LEYTTIVASPASDPAGFKYLAPYAGSAIGQHWMYGGKHVLIIFDDLSKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRL
+LERCAKLSDEMGAGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQVKAMKK
+VSGTLKLDLAQYRDQQAFSMFASDLDPATRRQLARGERLMELLKQPQYSPYPVEEQVVSIWAGSKGHLDEVPVQDVLRFE
+REFIDHLRRHTSVLTDIASTGKLEDGTVSALESAVAEFSKGFQSSEDGGVQAGHEEHRAIEQDQVAQEQITKQKR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001460.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001460.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2de5eb3abf52da1165a3c5a16512e78d38fcba16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001460.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02137
+MMTGASRDSLTASLEAVGPVLDEGGVALARELFGALDVVDEHGALRRALTDPAWTTERRH
+GLVDSLFGARVTPGALQVIKDLAGRRWSAERDLGDALETVAAHAAAAEAGRGGHAGLAAL
+SGELLAFNRTVEDSHEVQRALTDQHAPVEARAALARRLLGESASPAGQLLVERAVAAPRG
+VKPAAAVRQAADVVAERQRQWIAEVTVARPLGAEQQERLALGLRRAFERDLVMDVTVDPH
+VVGGIRVQVGDDVVDGSMASRLNDLQRRMAG
+>KBS0714_MOLHKGIG_00794
+MMTGASRDSLAASLEAVGPVLDEGGVALARELFGALDVVDEHGALRRALTDPAWTTERRH
+GLVDSLFGARVTPGALQVLKDLAGRRWSAERDLGDALETVAVHAAAAEAARGGHAGLAAL
+LGELLAFNRTVEDSHELQRALTDQHAPLEARAALAGRLLGESASPAGRLLVERAVSAPRG
+LKPSAAIRKAADAVAERQRQWIAEVTVARPLEAEQQERLALGLRRAFGRDLVMDVTVDPH
+VVGGVRVQVGDDVVDGSMASRLHDLQRRMAG
+>KD337_NAFOICDF_02030
+MMTGASGDSLTASLESVRTVLDEGGVALARELFAALDVVDQQGALRRALTDPAWSTERRH
+GVLDSLFGGRVSPGALQVLKDLAGRRWSAERDFGDALEAVAADAAAGEAARGGHAGLAAL
+SGELLGFQRVFQDSHEVERALTDQRAPRESRSGLARRLLGAQASPAAVLLVERAVTDGRG
+VKPATALRSYADVVATRQRQWIAEVTVARPLEDGQRERLAAGLRRAFGRDLVLDVNVDPT
+VVGGIRVQVGDDVIDGSMASRLNDLQRRMAA
+>SA211_MHAAABBN_00525
+MMTGASRDSLAASLEAVGPVLDEGGVALARELFGALDVVDEHGALRRALTDPAWTTERRH
+GLVDSLFGARVTPGALQVLKDLAGRRWSAERDLGDALETVAVHAAAAEAARGGHAGLAAL
+LGELLAFNRTVEDSHELQRALTDQHAPLEARAALAGRLLGESASPAGRLLVERAVSAPRG
+LKPSAAIRKAADVVAERQRQWIAEVTVARPLEAEQQERLALGLRRAFGRDLVMDVTVDPH
+VVGGVRVQVGDDVVDGSMASRLHDLQRRMAG
+>TT9_LFPAFLNI_00761
+MMTGASRDSLAASLEAVGPVLDEGGVALARELFGALDVVDEHGALRRALTDPAWTTERRH
+GLVDSLFGARVTPGALQVLKDLAGRRWSAERDLGDALETVAAHAAAAEAARGGHAGLAAL
+SGELLAFNRTVEDSHEVQRALTDQHAPLEARAALAGRLLGESASPAGRLLVERAVSAPRG
+LKPSAAVRKAADVVAERQRQWIAEVTVARPLEAEQQERLALGLRRAFGRDLVMDVTVDPH
+VVGGIRVQVGDDVVDGSMASRLHDLQRRMAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001463.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001463.fa
new file mode 100644
index 0000000000000000000000000000000000000000..50711b138132ea8f2cb7511a799b5d79096bdf37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001463.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02140
+MLTLVLANASFVPPTISDGNLPEIFPWGAEYGTGFGKQMLLVLLSVVLITAFFAWAMRRP
+QLVPGKAQWLAESGYSFVRNGIAKDILGEKNFRQWVPLLFAIFFFVLLNNLFGAIPVLQL
+PSFSHAGAAYGIALIVYAIWIGVGLKRHGIRYLKLAVVPSGVPSWILPLLVPLEIISNFI
+VRPLTHSLRLMATMLSGHMIVMLAGAGAAYLITQTGSLALQGTGILVIIGSVALYFLELL
+IMYLQAFVFTLLTAIYIQGAIDANDH
+>KBS0714_MOLHKGIG_00791
+MLTLVLANASFVPPTISDGHLPEIFPWGAEYGTGFGKQMLLVLLSVVLITAFFAWAMRRP
+RLVPGKAQWLAESGYSFVRNDIAKDILGEKNFKQWVPLLFAIFFFVLLNNLFGAIPVLQL
+PTFSHAGAAYGLALIVYAIWIGVGIKRHGVRYLKLAVVPSGVPGWILPLLVPLEIISNFI
+VRPLTHSLRLMATMLSGHMIVMLAGAGAAYLITQTGSLALQGTGILVILGSVALYFLELL
+IMYLQAFVFTLLTAIYIQGAIDANDH
+>KD337_NAFOICDF_02033
+MLPLVLANAEFVPPSVSDAHLPDLLPWGAEYGTGFGKQMLLVLLSVVLITGFFAWAMRKP
+KLVPGRAQWIAESGYAFVRNGIGRDVMGEKHFKQWVPLLFAIFFFVLLNNLFGAIPLLQM
+PSFSHAGSAYAIALIVYAIWIGVGVKHHGVKYFKLAVVPSGVPGWILPLLVPLEFISNFI
+VRPLTHSLRLMAVMLAGHMIVMLAGAGAAFLITQTGNPLLAGTGVLVILASVALYLLEIL
+LMYLQAFVFTLLTALYIQGAIDANDH
+>SA211_MHAAABBN_00522
+MLTLVLANASFVPPTISDGHLPEIFPWGAEYGTGFGKQMLLVLLSVVLITAFFAWAMRRP
+RLVPGKAQWLAESGYSFVRNDIAKDILGEKNFKQWVPLLFAIFFFVLLNNLFGAIPVLQL
+PTFSHAGAAYGLALIVYAIWIGVGIKRHGVRYLKLAVVPSGVPGWILPLLVPLEIISNFI
+VRPLTHSLRLMATMLSGHMIVMLAGAGAAYLITQTGSLALQGTGILVILGSVALYFLELL
+IMYLQAFVFTLLTAIYIQGAIDANDH
+>TT9_LFPAFLNI_00758
+MLTLVLANASFVPPTISDGHLPEIFPWGAEYGTGFGKQMLLVLLSVVLITAFFAWAMRRP
+RLVPGKAQWLAESGYSFVRNDIAKDILGEKNFKQWVPLLFSIFFFVLLNNLFGAIPVLQL
+PTFSHAGAAYGLALIVYAIWIGVGIKRHGVRYLKLAVVPSGVPGWILPLLVPLEIISNFI
+VRPLTHSLRLMATMLSGHMIVMLAGAGAAYLITQTGSLALQGTGILVILGSVALYFLELL
+IMYLQAFVFTLLTAIYIQGAIDANDH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001471.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001471.fa
new file mode 100644
index 0000000000000000000000000000000000000000..aa00089498f2d417de425d6ca3c3532b9a461922
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001471.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02148
+M-------PQHTDAPT--ALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAV
+RNTGATRDWQADPALYTTDAEALVDGADVVIELMGGIEPARTLILRALAAGTSVVTGNKA
+LLAQHGEELYAAAAATGAQLSFEAAVAGAIPILRPLRDSLAGDRVTRVMGIANGTTNYIL
+DKMDSEGAGFDEALAEAQRLGYAEADPTADVEGHDAAAKAAILATLAFGAPYTLDQVAVS
+GITAITAEDNEAAADAGYVIKLLAIAERARAADSAEGAVLRVHPTLLPREHPLASVRGAF
+NAVFVEAENAGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVAELPALDP
+AEAVTSCLVVLRVADEPGVLRRVAGVFEEQGVSIETLRQVQSDRDDAPGASLRLITHRAR
+QRDLDATVEALAALDAVHEVASVLRVEGN
+>KBS0714_MOLHKGIG_00782
+M-------PQHTDAPT--ALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAV
+RDTGATRDWQADPALYTTDAEALVDGADVVIELMGGIEPARTLILRALAAGTSVVTGNKA
+LLAQHGEELYAAAAATGAQLSFEAAVAGAIPILRPLRDSLGGDRVTRVMGIANGTTNFIL
+DRMDSEGADFDDALAEAQRLGYAEADPTADVEGHDAAAKAAILATIAFGAPYTLDQVAVA
+GITAITAEDNAAAAEAGYVIKLLAIAERGRAADGAQGAVLRVHPTLLPREHPLASVRGAF
+NAVFVEAENAGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVTALPALDP
+AEAHTSFMVVLRAADQPGVLRRVAGVFEEHGVSIETLRQVPSEREDAPGASLRLITHRAR
+QRDLDATVEALAALDVVHEVASVLRVEGN
+>KD337_NAFOICDF_02042
+MAEPTASAAQTAPAPARDALRVALLGGGTVGSQAARILTEDAAVLADRVGVRLELTGIAV
+RDTAAVRDWQADPSLYTTDAEALVDGADLVIELMGGIEPARSLIRRALQVGTSVVTGNKA
+LLAEHGEELYRLASETGAQLSFEAAVAGAIPILRPLRDSLSGDTVNRVMGIANGTTNFIL
+DRMDTEGASFADALAEAQRLGYAEADPTADVGGFDAAAKAAILATLAFGSSYTLDQVSVE
+GITEVTAEDNAAAADAGYVIKLLAIAERDTARDGTAGAILRVHPTLIPREHPLGSVRGAY
+NAVFVEAENAGQLMFYGPGAGGAPTASAVMGDAVAIGQRIVRGGPARLRTPVAALPALDV
+SEARTSCMVVLRVADQPGVLRRVAGVFEEHGVSIETLRQVQGA-DDAAGASLRLITHRAR
+QRDLDDVVAELTTLDAVHEVASVLRVEGN
+>SA211_MHAAABBN_00513
+M-------PQHTDAPT--ALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAV
+RDTGATRDWQADPALYTTDAEALVDGADVVIELMGGIEPARTLILRALAAGTSVVTGNKA
+LLAQHGEELYAAAAATGAQLSFEAAVAGAIPILRPLRDSLGGDRVTRVMGIANGTTNFIL
+DRMDSEGADFDDALAEAQRLGYAEADPTADVEGHDAAAKAAILATIAFGAPYTLDQVAVA
+GITAITAEDNAAAAEAGYVIKLLAIAERGRAADGAQGAVLRVHPTLLPREHPLASVRGAF
+NAVFVEAENAGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVTALPALDP
+AEAHTSFMVVLRAADQPGVLRRVAGVFEEHGVSIETLRQVPSEREDAPGASLRLITHRAR
+QRDLDATVEALAALDVVHEVASVLRVEGN
+>TT9_LFPAFLNI_00749
+M-------PQHTDAPT--ALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAV
+RDTGATRDWQADPALYTTDAEALVDGADVVIELMGGVEPARTLILRALAAGTSVVTGNKA
+LLAQHGEELYAAAAATGAQLSFEAAVAGAIPILRPLRDSLGGDRVTRVMGIANGTTNFIL
+DRMDSEGADFDDALAEAQRLGYAEADPTADVEGHDAAAKAAILATIAFGAPYTLDQVAVA
+GITAITAEDNAAAAEAGYVIKLLAIAERGRAADGAQGAVLRVHPTLLPREHPLASVRGAF
+NAVFVEAENAGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVTALPALDP
+AEAHTSFMVVLRAADQPGVLRRVAGVFEEHGVSIETLRQVPSEREDAPGASLRLITHRAR
+QRDLDATVEALAALDVVHEVASVLRVEGN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001475.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001475.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7f71bded45165d792bbcad705bfa0f00cf3e7fab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001475.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02152
+MAEH------RTPPATPAIPPLRIGGYDLAARLIMGTGGITDLTALEGALVASGTTLTTV
+ALRRWSADTRDGLVALLDRLGIDVLPNTAGCYTARDAVLTARLGREALETDLVKVEVIAD
+ERTLLPDVVETLEATELLAADGFTVLAYTSDDPAMALRLEQAGAAAVMPLGSPIGSGLGI
+LNRAHLELIVSRASVPIVLDAGVGTASDVALAMEAGCDAVLAASAITRAAEPARMAHACR
+LALEAGFHARRAGRIPRREHALASSPMAGRVTAEEDER
+>KBS0714_MOLHKGIG_00778
+MAEH------RTPPAAPAIPPLRIGGYDLASRLIMGTGGITDLTALEGALVASGTTLTTV
+ALRRWSADTRDGLVALLDRLGIDVLPNTAGCYTARDAVLTARLGREALETDLVKVEVIAD
+ERTLLPDVVETLEATERLAADGFTVLAYTSDDPAMALRLEQAGAAAVMPLGSPIGSGLGI
+LNRAHLELIVSRASVPIVLDAGVGTASDVALAMEAGCDAVLAASAITRAAEPARMAHACR
+LALEAGFHARRAGRIPRREHALASSPMAGRVTAEEDER
+>KD337_NAFOICDF_02047
+MAPHDTTERRRAREASTAVPPLRIGGYELSSRLIMGTGGITDLAALEGALVASETTLTTV
+ALRRWSTDARDGLIALLDRLGIDVLPNTAGCRTARDAVLTARLGREALETELVKVEVIAD
+DRTLLPDVVETLDATEQLAAAGFTVLAYTSDDPAMALRLEHAGAAAVMPLGSPIGSGLGI
+LNRTNLELIVSRAGVPVVLDAGVGTASDVALAMEAGCDAVLAASAITRAAEPARMAHACR
+LALEAGYHAHRAGRIPRRLHALASSPMAGRIGGAEERA
+>SA211_MHAAABBN_00509
+MAEH------RTPPAAPAIPPLRIGGYDLASRLIMGTGGITDLTALEGALVASGTTLTTV
+ALRRWSADTRDGLVALLDRLGIDVLPNTAGCYTARDAVLTARLGREALETDLVKVEVIAD
+ERTLLPDVVETLEATERLAADGFTVLAYTSDDPAMALRLEQAGAAAVMPLGSPIGSGLGI
+LNRAHLELIVSRASVPIVLDAGVGTASDVALAMEAGCDAVLAASAITRAAEPARMAHACR
+LALEAGFHARRAGRIPRREHALASSPMAGRVTAEEDER
+>TT9_LFPAFLNI_00745
+MAEH------RTPPAAPAIPPLRIGGYDLASRLIMGTGGITDLTALEGALVASGTTLTTV
+ALRRWSADTRDGLVALLDRLGIDVLPNTAGCYTARDAVLTARLGREALETDLVKVEVIAD
+ERTLLPDVVETLEATERLAADGFTVLAYTSDDPAMALRLEQAGAAAVMPLGSPIGSGLGI
+LNRAHLELIVSRASVPIVLDAGVGTASDVALAMEAGCDAVLAASAITRAAEPARMAHACR
+LALEAGFHARRAGRIPRREHALASSPMAGRVTAEEDER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001481.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001481.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8bd0350bfc7e61f44a4a0f33df9982a2b7b959e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001481.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02159
+MSVSERTPLPAAESTAEVVAEENYPTHRLGWLEDAEHGIRVPVTEVHQDDSPDGTPNAPLTVYRTMGPGSVPEHGLPAQR
+AEWIRARGDVEEYEGRDRDLLDDGRSAVRRGAASQEWAGERRAPLRAKEGARVTQMHYARRGEITPEMRYVALREGVDVE
+LVRSEVAAGRAIIPANVNHPESEPMIIGKAFAVKVNANIGNSAVTSSIAEEVSKLQWATRWGADTVMDLSTGDDIHTTRE
+WILRNSPVPIGTVPIYQALEKVGGDHQALTWEIFRDTVIEQCEQGVDYMTVHAGVLLRHVPLSADRVTGIVSRGGSIMAG
+WCLGHHKENFLYEHYDELCEIFARYDVAFSLGDGLRPGSVADANDAAQFAELDTLAELTERAWAYDVQVMVEGPGHIPLH
+LVRENVERQQELCKGAPFYTLGPLVTDIAPAYDHITSAIGATEIARYGTAMLCYVTPKEHLGLPNRDDVKTGVITYKIAA
+HAADVAKGHPGARDRDDALSKARFEFRWRDQFGLGLDPQLAEEYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRSEF
+GGASEQARIAEAGMAAKSAEFRAAGGSVYLPEPTLRG-------AADA
+>KBS0714_MOLHKGIG_00771
+MSVSERTPLPAAESTAEVVAEENYPTHRLGWLEDAEHGIRVPVTEVHQDDSPDGTPNAPLTVYRTMGPGSVPERGLPAQR
+AEWIRARGDVEEYEGRERDLLDDGRSAVRRGAASQEWAGERRPPLRAKEGARVTQMHYARRGEITPEMRYVALREGVDVE
+LVRSEVAAGRAIIPANVNHPESEPMIIGKAFAVKVNANIGNSAVTSSIAEEVSKLQWATRWGADTVMDLSTGDDIHTTRE
+WILRNSPVPIGTVPIYQALEKVGGDHQALTWEIFRDTVIEQCEQGVDYMTVHAGVLLRHVPLSADRVTGIVSRGGSIMAG
+WCLGHHKENFLYENYDELCEIFARYDVAFSLGDGLRPGSVADANDAAQFAELDTLAELTERAWAYDVQVMVEGPGHIPLH
+LVRENVERQQELCKGAPFYTLGPLVTDIAPAYDHITSAIGATEIARYGTAMLCYVTPKEHLGLPNRDDVKTGVITYKIAA
+HAADVAKGHPGARDRDDALSKARFEFRWRDQFGLGLDPQLAEEYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRSEF
+GGASEQARIAEAGMAAKSAEFRAAGGSVYLPEPSLRRPEGDAVLARD-
+>KD337_NAFOICDF_02054
+MSASHHTPVP-PQSEAVPTAEENYPTHRLGWLEDAEHGIRVPVTHVHQDDSPDGTPNPPFAVYRTMGPGSVPERGLPAQR
+AEWIAARGDVEEYEGRERDLLDDGRSAVRRGAASQEWAGERRPPLRAKEGARVTQMHYARRGEITPEMRYVALREGVDAE
+LVRSEVAAGRAIIPANVNHPESEPMIIGKAFAVKVNANIGNSAVTSSIAEEVSKLQWATRWGADTVMDLSTGDDIHTTRE
+WILRNSPVPIGTVPIYQALEKVGGDHQALTWEIFRDTVIEQCEQGVDYMTVHAGVLLRHVPLSADRVTGIVSRGGSIMAG
+WCLGHHRENFLYENYDELCEIFARYDVAFSLGDGLRPGSVADANDAAQFAELDTLAELTERAWAYDVQVMVEGPGHIPLH
+LVRENVERQQELCKGAPFYTLGPLVTDVAPAYDHITSAIGATEIARYGTAMLCYVTPKEHLGLPNRDDVKTGVITYKIAA
+HAADVAKGHPGARDRDDALSTARFEFRWRDQFGLGLDPQLAEEYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRSEF
+GGESEQARIAEAGMAAKSAEFRAAGGSVYLPEPSMRRPEGDAALAAD-
+>SA211_MHAAABBN_00502
+MSVSEHTPLPAAESTAEVVAEENYPTHRLGWLEDAEHGIRVPVTEVHQDDSPDGTPNAPLTVYRTMGPGSVPERGLPAQR
+AEWIRARGDVEEYEGRERDLLDDGRSAVRRGAASQEWAGERRAPLRAKEGARVTQMHYARRGEITPEMRYVALREGVDVE
+LVRSEVAAGRAIIPANVNHPESEPMIIGKAFAVKVNANIGNSAVTSSIAEEVSKLQWATRWGADTVMDLSTGDDIHTTRE
+WILRNSPVPIGTVPIYQALEKVGGDHQALTWEIFRDTVIEQCEQGVDYMTVHAGVLLCHVPLSADRVTGIVSRGGSIMAG
+WCLGHHKENFLYENYDELCEIFARYDVAFSLGDGLRPGSVADANDAAQFAELDTLAELTERAWAYDVQVMVEGPGHIPLH
+LVRENVERQQELCKGAPFYTLGPLVTDIAPAYDHITSAIGATEIARYGTAMLCYVTPKEHLGLPNRDDVKTGVITYKIAA
+HAADVAKGHPGARDRDDALSKARFEFRWRDQFGLGLDPQLAEEYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRSEF
+GGASEQARIAEAGMAAKSAEFRAAGGSVYLPEPSLRRPEGDAVLARD-
+>TT9_LFPAFLNI_00738
+MSVSERTPLPAAESTAEVVAEENYPTHRLGWLEDAEHGIRVPVTEVHQDDSPDGTPNPPLPVYRTMGPGSVPERGLPAQR
+AEWIRARGDVEEYEGRERDLLDDGRSAVRRGAASQEWAGERRPPLRAKEGARVTQMHYARRGEITPEMRYVALREGVDVE
+LVRSEVAAGRAIIPANVNHPESEPMIIGKAFAVKVNANIGNSAVTSSIAEEVSKLQWATRWGADTVMDLSTGDDIHTTRE
+WILRNSPVPIGTVPIYQALEKVGGDHQALTWEIFRDTVIEQCEQGVDYMTVHAGVLLRHVPLSADRVTGIVSRGGSIMAG
+WCLGHHKENFLYENYDELCEIFARYDVAFSLGDGLRPGSVADANDAAQFAELDTLAELTERAWAYDVQVMVEGPGHIPLH
+LVRENVERQQELCKGAPFYTLGPLVTDIAPAYDHITSAIGATEIARYGTAMLCYVTPKEHLGLPDRDDVKTGVITYKIAA
+HAADVAKGHPGARDRDDALSKARFEFRWRDQFGLGLDPQLAEEYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRSEF
+GGASEQARIAEAGMAAKSAEFRAAGGSVYLPEPTIRT-------ASDA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001482.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001482.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1a3f4172110813b89292963fd4d615ba3214b7c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001482.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02160
+MTKEHRTDHDAGDDAGPAAPVRSAA------GAAEPPAGVVVGEDGRARAPWADRDPLLR
+AYYDEEWGVPVTDERGLFERLVLEAFQSGLSWRTVLAKRPRFREAFAGFDPDAVAGFGPE
+RVEELLQDAGIIRNRAKVEAAIANAQAVVGMRDEPWTPLHPGSPGAGPGWDGPGDRPDRG
+LAGLVWAHQPAATPRPGTVAEVPSASDESRALATALKARGCRFVGPTTCFALMEAAGIVD
+THLLSSWRRGASGIWE
+>KBS0714_MOLHKGIG_00770
+MSAHHA-------DDGLPAPVSTLAEDPPADGRQAPPSGVVVGEDGRARPPWAARDPLLR
+EYYDTEWGLPVTDERGLFERLVLEAFQSGLSWRTVLAKRPRFREVFAGFDPDAVAAFGDA
+EVEALLADPGIIRNRRKIEAAVANAQAVVGMRGERFAPLHPGAPGAGPAWHGDGDRPARG
+LPGLVWAHQPAATPRPETVAQVPSTSDESRALARALKAHGCRFVGPTTCFALLEAAGIVD
+THLLGSWRRGASGIWE
+>KD337_NAFOICDF_02056
+M-----------------------------DEENSEAAGLVLGADGRARAAWAAADPLLR
+DYYDAEWGLPVTDERGLFERLTLEAFQSGLSWRTVLAKRPRFREVFAGFDPDAVAAFGAV
+EVEALMADAGIIRNRRKIDAALANARAVVGIRDEVFAPLHPGSPGAGPAWDGEGDRPGTG
+LPGLVWAHQPAQTPTPRTIGEVPSASPESTALAKALKARGCRFVGPTTCFALLEAAGVVD
+THLVSSWRRGASGIWA
+>SA211_MHAAABBN_00501
+MSAHHA-------DDGLPAPVSTLAEDPPADGRQAPPSGVVVGEDGRARPPWAARDPLLR
+EYYDTEWGLPVTDERGLFERLVLEAFQSGLSWRTVLAKRPRFREVFAGFDADAVAAFGDA
+EVEALLADPGIIRNRRKIEAAIANAQAVVGMRGERFTPLHPGSPGAGPAWHGDGDRPARG
+LAGLVWAHQPAATPRPETVAQVPSASEESRALARALKAHGCRFVGPTTCFALMEAAGVVD
+THLLGSWRRGASGIWE
+>TT9_LFPAFLNI_00734
+MSAHHA-------DDGLPAPVSTPAEDPPADGRQAPPSGVVVGEDGRARPPWAARDPLLR
+EYYDTEWGLPVTDERGLFERLVLEAFQSGLSWRTVLAKRPRFWEVFAGFDADAVAAFGDA
+EVEALLSDPGIIRNRRKIEAAIANARAVVGMRGERFAPLHPGAPGAGPAWHGDGDRPARG
+LPGLVWAHQPAATPRPETVAQVPSTSDESRALARALKAHGCRFVGPTTCFALLEAAGIVD
+THLLGSWRRGASGIWE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001484.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001484.fa
new file mode 100644
index 0000000000000000000000000000000000000000..004a279f317267bb62933790856c4d8eefe4ce16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001484.fa
@@ -0,0 +1,95 @@
+>AS2_ACLBLIBL_02163
+MTETPTP--PAAASSAP-----AIVFPEHLPVAERREEIMAAIRDHQVVIVAGETGSGKTTQLPKMCLALGLGEAGVIGH
+TQPRRIAARSVAERIAEELGEDIGRTVGYQVRFTAQTSKATRVKVMTDGILLAEIPHDPQLRRYSVVIVDEAHERSLNID
+FLLGYLRTLLPQRPDLKVIITSATIDPERFARHFGRALAEGEEHEDAVPADDGGLVVPAPVIEVSGRTYPVEVRYRPLTG
+EPSPDDPEDDSDDAAETRDPLDAIGEAVLELAAEPPGDILVFLPGEREIRDAADHLSGVVASSKRLAGTEVLPLFGRLSM
+AEQHRVFGRAAAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRAGRSGRTSPG
+IAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVAATPADVQGFPFVQPPDGRQVSDGATTLTELGALHPPRPSG
+AKDGHDGGRGRG---GRAPEPGTITPIGRRLARLPVDPRLGRMILESGERGCVREVMVLAAALTIQDPRERPVEQREAAD
+ELHRRFADENSDFSAILNLWAYLQEQQKELSGSQFRKLCRREHINWLRVHEWQDLVRQLRQLAKDVGVAVHAGPVDPVGQ
+HEAVHRSLLTGLLSQIGSYDERRREYAGARGTRFAVFPGSALFKKRHPFVMAAELVETSRLWARTVARIEPEWAEEAAGG
+LVKRTYNEPHWSRRAGAVVAREKVTLFGVTLIPDRSVKYGRIDPELSRELFIRHALVEGDWRTRHRFFARNRAALEEVDA
+LETRLRRRDLRIGDEDLFAFYDARVPANVVSERHFDAWWKKARQERPDLLDLDVAALLTADAEDLDTDAFPTVFPYPLSG
+GDVDLDLEYTFDPTGASGTDGVTVSVPVLLLNQVSPGPFAWLVPGLRVELVTALIKALPKAVRKQLVPAPDVARQLVADL
+DAHADPLADELTEALSAAVRRVRGIVVEPGLWAPDAVPAHLRMDYRVVDARGAVMGAGQDLAALQARLAKANRSAIAARL
+AGTDDPANARPGPGRQGGRRDGGGNDGGAGRRGSGRGVRGR-----GRDGTGRPEAG----AQGAGG-AAAAFAERHGLT
+SWSIGTVPRRITTDPGARGPAITGYPALVPETTAEGGPAAGLTVARSAEDQAAWHRAGVIRLLLATLPSPQRYVLDHLDN
+REKLTFTQNPHGSVDSLVADCSQAAVDRLVGDELPFDEAAFRALFDRVRADLIDTVFAVTRLVEQVLSRAAEVRRRLKGS
+VSLAMAPALSDVKAHLEQLVFPGFVAATGWERLQHLPRYLQGILVRLDRLDAGGHLQRDGQHMAVVQRLEDEFDAAVQAH
+RARFSGVPVPADLERVRWLIEELRVSFFAQELGTAVSVSEKRVRQALAQAARA
+>KBS0714_MOLHKGIG_00766
+MTQTPPPSTPAAQPSATPHDAVAITFPEHLPVAERREEIMAAIRDHQVVIVAGETGSGKTTQLPKMCLALGLGEAGSIGH
+TQPRRIAARSVAERIAQELGEEIGQTVGYQVRFTAQTSKATRVKVMTDGILLAEIPHDPQLRRYSVIIVDEAHERSLNID
+FLLGYLRNLLPQRPDLKVIITSATIDPERFARHFGRPLAEGEDHADAVEADDGGRVVPAPIIEVSGRTYPVEIRYRPLTD
+EPSPDDPEDDADDAAETRDPLDAIGDAVLELASEPPGDILVFLPGEREIREAADHLTGVVAGTTRLAGTEILPLFGRLSM
+AEQHRVFGRAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRSGRTSDG
+IAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVARTPGDVKEFPFVQPPDGRQVTDGATTLTELGAL-------
+--------EAGG---ARA---GTITRVGRRLARLPVDPRLGRMILEAGERGCVREVMVIAAALTIQDPRERPTEQREAAD
+ELHRRFADENSDFSAILNLWAYLRERQQELSGSQFRKLCRREHINWLRVQEWQDLVRQLRQLAKDVGLTVEAGPVDPVGR
+HEAVHKSLLTGLLAQIGAYDERRREYAGARGTRFAVFPGSALFKKRHPFVMAAELVETSRLWARTVARIEPEWAEEVAGH
+LVKRAYNEPHWSRRAGSVVAREKVTLFGVTLIPDRSVRYGRIDPELSRELFIRHALVEGDWRTRHRFFARNRAALEEVDA
+LETRLRRRDLRIGDEDLFAFYDARIPANVVSERHFDAWWKKARQEQPDLLDLDVAALLTADAEDLDTDAFPTTFSYPMPG
+GDVELDLEYTFDPTGAAGTDGVTVAVPILLLNQVSPGPFAWLVPGLRVELVTALIKALPKAVRKNLVPAPDVAQQLVADL
+EAHADPLRDELPEALSAAVRRVRGVVVEPGLWAPDAVPLHLRMDYRVVDARGAVMGAGQDLPALQARLAQANRSAIAARL
+AGTDDPASARPGP------------------RGTGRGGRAQADARAGAEGRRRPE------GPGRSG-ATPAFEERHRLT
+SWSIGTVPKTVSTAAGARGPAITGYPSLVPETTPDGGPAAGLTVARSAEDQAAWHRAGVIRLLLATLPSPQRYVLDHLDN
+REKLTFTQNPHGSVDSLVADCTQAAVDRLVGDELPFDEAAFRALFDRVRADLIDTVFAVTSLVEQVLSRAAQVRRRLKGS
+VSLALAPALSDVKAHLEQLVFPGFVAATGWERLQHLPRYLQGMLTRLDRLDAGGHLQRDGQHMAVVQGLEDEFDAAVAAH
+RARFAGTPVPAELERVRWLIEELRVSFFAQELGTAVSVSEKRVRQALARATRA
+>KD337_NAFOICDF_02059
+MTDFPQP--PAAAP--------VITFPAHLPVAERREEIMDAVRENQVVIVAGETGSGKTTQLPKMLLALGLGGAGVVGH
+TQPRRIAARSVAERIAEELGEDVGRTVGYQVRFTAQTSTRTRVKVMTDGILLAEIPHDPDLRKYSAIIVDEAHERSLNID
+FLLGYLKRLLPRRPDLKVIITSATIDPERFARHFGT-----EDE-------------PAPIIEVSGRTYPVEIRYRPLTE
+EPSPDDPDDDADDHAETRDPIDAVGDAVLELAGEAPGDILVFFPGEREIREAADHLAGVVASTPRLAGTEVLPLYGRLSM
+AEQHRVFGRAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRSGRSGRTSDG
+IAIRLYSEEDFLSRPEFTDPEILRTSLASVILQMLSLGVADTPREVMDFPFVQPPDSRQVTDGAATLTELGALHADAPT-
+----RGGGRGRGKGAGNRSAAGTITDIGRRLARLPVDPRLGRMILESGRRDCTREVMVLAAALTIQDPRERPVEQRQAAD
+ELHARFADDRSDFSAYLNLWEYLREQQRELSGSQFRKLCRREHINWLRVHEWQDLVRQLRQLSKDVGVSVHPGPVDPVGK
+HDDVHKSLLTGLLSQIGAYDERRREYQGARNTRFAVFPGSALFKKRHPFVMAAELVETSRLWARAVARIEPEWIEEVAGD
+LVLRSYAEPHWSRKAGAAVAMEKVTLFGVTIVPERSVRYGRIDPVLSRELFLRHALVEGDWRTRHRFFARNRRLLEEVDE
+LETRLRRRDLRVGDEELFAFYDARVPANVVSERHFDAWWKKARQETPDLLDLDLDALLTQDADELDTDAFPTAFRYPLPG
+GDADLALDYTYDPTGASGTDGVTVAVPILLLNEVAPGPFAWLVPGLRGELVTALIKALPKAVRKNLVPAPDVARLLVEDL
+DAHADPLRDELPAALSSAVRRVRGAVVEPELWRLDAVPDHLRMDYRVVDARGAVMGAGQDLPALQARLAKANRSAIAARL
+AGTDDPRNARPG-------------------QGAGR-GRGKTEPKGGDGGARGPAADTGRPGPSRTADGAPAFRERHGLT
+SWTVGEVPRQITTAPGDRGPAITGYPSLIPETTADGSPAAGLVVARSAQDQAAWHRAGVIALLLATLPSTHRYVLDHLDN
+KEKLTFTQNPHGSVESLVRDATHVAVDRLVGTDLPFTEVGFRALFDRVRADLIDTVFAVTALVEQVLSRAAEVRRRLKGG
+VSLAMAPAKSDVQAHLEQLVFPGFLAATGWQQLQHLPRYVQGMLARLDKLDAGGHLQRDGQHMAVVQGLEDEFDAAVTAH
+RSRFPGTPVPAELERVRWLLEELRVSYFAQELGTAVSVSEKRVRQALAQARQG
+>SA211_MHAAABBN_00496
+MTQTPPPSTPAAQPSATPHDAVAITFPEHLPVAERREEIMAAIRDHQVVIVAGETGSGKTTQLPKMCLALGLGEAGSIGH
+TQPRRIAARSVAERIAQELGEEIGQTVGYQVRFTAQTSKATRVKVMTDGILLAEIPHDPQLRRYSVIIVDEAHERSLNID
+FLLGYLRNLLPQRPDLKVIITSATIDPERFARHFGRPLAAGEDHADAVEADDGGRVVPVPIIEVSGRTYPVEIRYRPLTD
+EPSPDDPEDDADDAAETRDPLDAIGDAVLELAAEPPGDILVFLPGEREIREAADHLTGVVAGTTRLAGTEILPLFGRLSM
+AEQHRVFGRAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRAGRSGRTSDG
+IAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVARTPGDVKEFPFVQPPDGRQVTDGATTLTELGAL-------
+--------EAGG---ARA---GTITRVGRRLARLPVDPRLGRMILEAGERGCVREVMVIAAALTIQDPRERPTEQREAAD
+ELHRRFADENSDFSAILNLWAYLHERQKELSGSQFRKLCRREHINWLRVQEWQDLVRQLRQLAKDVGLTVEAGPVDPVGR
+HEAVHKSLLTGLLSQIGAYDERRREYAGARGTRFAVFPGSALFKKRHPFVMAAELVETSRLWARTVARIEPEWAEEVAGH
+LVKRAYNEPHWSRRAGSVVAREKVTLFGVTLIPDRSVRYGRIDPELSRELFIRHALVEGDWRTRHRFFARNRAALEEVDA
+LETRLRRRDLRIGDEDLFAFYDARIPGNVVSERHFDAWWKKARQDQPDLLDLDVAALLTADAEDLDTDAFPTTFAYPMPG
+GDVELDLEYTFDPTGAAGTDGVTVAVPILLLNQVSPGPFAWLVPGLRVELVTALIKALPKAVRKNLVPAPDVAQQLVADL
+EAHADPLRDELPDALSAAVRRVRGVVVEPGLWAPDAVPLHLRMDYRVVDARGAVMGAGQDLPALQARLAQANRSAIAARL
+AGTDDPASARPGP------------------RGTGRGGRAPADARAGAEGHRRPE------GPGRSG-ATPVFEERHGLT
+SWSIGTVPKTVSTAAGARGPAITGYPSLVPETTPDGGPAAGLTVARSAEDQAAWHRAGVIRLLLATLPSPQRYVLDHLDN
+REKLTFTQNPHGSVDSLVADCTQAAVDRLVGDELPFDEAAFRALFDRVRADLIDTVFAVTSLVEQVLSRAAQVRRRLKDS
+VSLALAPALSDVKAHLEQLVFPGFVAATGWERLQHLPRYLQGMLTRLDRLDAGGHLQRDGQHMAVVQGLEDEFDAAVAAH
+RARFAGTPVPAELERVRWLIEELRVSFFAQELGTAVSVSEKRVRQALARATRA
+>TT9_LFPAFLNI_00730
+MTQTPPPSTPAAQPSATPHDAVAITFPEHLPVAERREEIMAAIRDHQVVIVAGETGSGKTTQLPKMCLALGLGEAGSIGH
+TQPRRIAARSVAERIAQELGEEIGQTVGYQVRFTTQTSKATRVKVMTDGILLAEIPHDPQLRRYSVIIVDEAHERSLNID
+FLLGYLRNLLPQRPDLKVIITSATIDPERFARHFGRPLAAGEDHADAVEADDGGRVVPAPIIEVSGRTYPVEIRYRPLTD
+EPSPDDPEDDADDAAETRDPLDAIGDAVLELAAEPPGDILVFLPGEREIREAADHLTGVVAGTTRLAGTEILPLFGRLSM
+AEQHRVFGRAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRAGRSGRTSDG
+IAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVARTPGDVKEFPFVQPPDGRQVTDGATTLTELGAL-------
+--------EAGG---ARA---GTITRVGRRLARLPVDPRLGRMILEAGERGCVREVMVIAAALTIQDPRERPTEQREAAD
+ELHRRFADENSDFSAILNLWAYLHERQKELSGSQFRKLCRREHINWLRVQEWQDLVRQLRQLAKDVGLTVEAGPVDPVGR
+HEAVHKSLLTGLLSQIGAYDERRREYVGARGTRFAVFPGSALFKKRHPFVMAAELVETSRLWARTVARIEPEWAEEVAGH
+LVKRTYNEPHWSRRAGSVVAREKVTLFGVTLIPDRSVRYGRIDPELSRELFIRHALVEGDWRTRHRFFARNRAALEEVDA
+LETRLRRRDLRIGDEDLFAFYDARIPGNVVSERHFDAWWKKARQDQPDLLDLDVAALLTADAEDLDTDAFPTTFTYPMPG
+GDVELDLEYTFDPTGAAGTDGVTVAVPILLLNQVSPGPFAWLVPGLRVELVTALIKALPKAVRKNLVPAPDVAQQLVADL
+EAHADPLRDELPDALSAAVRRVRGVVVEPGLWAPDAVPLHLRMDYRVVDARGAVMGAGQDLPALQARLAQANRSAIAARL
+AGTDDPASARPGP------------------RRTGRGGRAQADGRAGAEGRRRPE------GPGRSG-ATPAFEERHGLT
+SWSIGTVPRTVSTAAGARGPAITGYPSLVPETTPDGGPAAGLTVARSADDQAAWHRAGVIRLLLATLPSPQRYVLDHLDN
+REKLTFTQNPHGSVDSLVADCTQAAVDRLVGDELPFDEAAFRALFDRVRADLIDTVFAVTSLVEQVLSRAAQVRRRLKGS
+VSLALAPALSDVKAHLEQLVFPGFVAATGWERLQHLPRYLQGILTRLDRLDAGGHLQRDGQHMAVVQGLEDEFDAAVAAH
+RARFAGTPVPAELERVRWLIEELRVSFFAQELGTAVSVSEKRVRQALARATRA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001486.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001486.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9f55899144545399da16649fcdf36f9c0a9d844c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001486.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02165
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------------------MWGIDDG
+DTVVVYDDDRGLSAARAWWLLRHAGLRDSMLLDGGLAAWRAGGLPLQPGEVIPMPGSART
+SWGRMPVVDTAGAEAMASGGLLLDARAAERYRGETEPIDPVTGHIPGARSLPTAGSLAED
+GRLRPAEELAARFDAVGVDDETPVAVYCGSGVTAAHAVLTLAVAGRPGVALYPGSWSAWI
+QDPSNAVAVGPDPHGEPGRD
+>KBS0714_MOLHKGIG_00764
+MHSETPDPSPVPDRDGAAPDRPDPLIVVDEGQARVVPAPTAAPSSSHDAGGDPDA----D
+TDGVDPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPEGPAYAQPGRCRPNRVILLDVRFR
+ATA-GGPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEG
+DTIVVYDDDHGLSAARAWWLLRHAGLRDSMLLDGGLEAWRAAGLPLQPGEVIPVPGTARP
+SWGRMPVVDTAGAEAMASGGLLLDARAAERYRGEVEPFDPVAGHIPGARNVPTAESIAED
+GRLRPAAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWV
+QDPSNAVAVGPEPDGASGRD
+>KD337_NAFOICDF_02061
+MK--------------------------DSTEGR-PPSPASSPAADAPTDQTPLAELAED
+ATAPDPAAAEPPSLVDVGVLAGWLGLTPAEPVPAPPPGPVFDR--RVDPGRVILLDVRYA
+VAGAGGSGHDAYLRGHLPGAVFVSLPNQLAGHAGPRQGRHPLPDPVQFAHSLRMWGIDDG
+DTVVVYDDDRSLAAARAWWLLRHAGLRDSVLLDGGLGAWRAAGLPLQPGEVIPQPGSVHP
+SWGRMPVVDTDGAEAIAAGGLLLDARSAERYRGEEEPLDPVAGHIPGARSLPTSGNVAAD
+GRLLDPAALAARFEDAGLSDEVPAAVYCGSGVTAAHQVLALAVAGRHGVALYPGSWSAWI
+QDPDRPVATGPRPEG----D
+>SA211_MHAAABBN_00494
+MHSETPDPSPVPDRDGAAPDRPDPLIVVDEGQGRVVPAPTAAPSSSHDAGGDPDA----D
+IDGVDPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPGGPAYAQPGRCRPNRVILLDVRFR
+ATG-GGPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEG
+DTIVVYDDDHGLSAARAWWLLRHAGLRDSVLLDGGLEAWRAAGLPLQPGEVIPVPGTARP
+SWGRMPVVDTAGAEAMASGGLLLDARAAERYRGEVEPFDPVAGHIPGARNVPTAESIAED
+GRLRPAAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWV
+QDPSNAVAVGPEPDGASGRD
+>TT9_LFPAFLNI_00728
+MHSETPDPSPVPDRDGAAPDRPDPLIVVDEGQGRVVPAPTAAPSSSHDAGGDPDA----D
+IDGVDPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPGGPAYAQPGRCRPNRVILLDVRFR
+ATG-GGPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEG
+DTIVVYDDDHGLSAARAWWLLRHAGLRDSVLLDGGLEAWRAAGLPLQPGEVIPVPGTARP
+SWGRMPVVDTAGAEAMASGGLLLDARAAERYRGEVEPFDPVAGHIPGARNAPTAESIAED
+GRLRPAAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWV
+QDPSNAVAVGPEPYGASGRE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001488.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001488.fa
new file mode 100644
index 0000000000000000000000000000000000000000..58cdae3add6eec30e0fb635d46d4de3da2927073
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001488.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02169
+MDWLIEPFLLGFQQRALVGGLIAAALCAVVGTWLVLRGMSFFGDAFVHGVMPGIALSVVL
+GFDAHLGAALAALVMLAGISLVHRATTLKEDTAIGLLFVGMMALGVVIISLSDSYTGSLT
+AILFGDALGVTWEGIVRQAVIAALVLVLALVLYRPLMALSFSPAKARSLGMRPRLTHALL
+LVMIGAAVIGSFQAVGTVLVFGLLVGPPATAALLTRTVPQMMALAVLLGAAGVTIGLVLS
+YHLGTAASATMALVPIAMFFVVLAGRAGLRALRSRRVRADRRRA---------------V
+VETPSRRSVSP
+>KBS0714_MOLHKGIG_00761
+MDWLLEPFQMGFQQRALVGGLIAVVMCSVVGTWLVLRGMSFFGDAFVHGVLPGIALAVVT
+GGSPHLGAAVAAVVMMAGISLVHRATTLKEDTAIGLLFVGMMALGVVIISKSDSYTGSLT
+SILFGDVLGVSVDGIVTQAVIAVVVIALALLLYRPLLALSFSEVKARSLGMRPGLTHTLL
+LVMIGAAVIGSFQAVGTVLVFGLLVGPPATAALLTRSVPQMMLVSVVIGAACVVTGLTLS
+YRLGTAGSATMALMPILLFFVVLAVRAAVLALLGRHVRSRAQRERETP-----------V
+VALPGAEVAR-
+>KD337_NAFOICDF_02064
+MDWLIDPFLLGFQQRALLGGLIAALMCSAVGTWLVLRGMSFFGDAFVHGVLPGIALAVLL
+GGSPHLGAALAAVLMMGGISLVHRTTTLKEDTAIGLLFVGMMALGVVIISLSSSYTGSLT
+AILFGDALGVTPENLLVQAAIGVVVVVLALVLYRPLLALSFSEAKSQALGMRPRLTHTLL
+LVLIGAAVIGSFQAVGTVLVFGLLVGPPATAALLTRTVPQMMALSAGIGALSVVAGLVLS
+YHWGTAASATMALVPVVLFFVVLLGRSAVQAAAGRRRRTRGAASAPTPAGDDDAESRRET
+EGSPAR-----
+>SA211_MHAAABBN_00491
+MDWLLEPFQMGFQQRALVGGLIAVVMCSVVGTWLVLRGMSFFGDAFVHGVLPGIALAVVT
+GGSPHLGAAVAAVVMMAGISLVHRATTLKEDTAIGLLFVGMMALGVVIISKSDSYTGSLT
+SILFGDVLGVSVDGIVTQAVIAVVVIALALLLYRPLLALSFSEVKARSLGMRPGLTHTLL
+LVMIGAAVIGSFQAVGTVLVFGLLVGPPATAALLTRSVPQMMLVSVVIGAACVVTGLTLS
+YRLGTAGSATMALMPILLFFVVLAVRAAVLALLGRHVRSRAQREQEAP-----------V
+VALPGAEAPR-
+>TT9_LFPAFLNI_00725
+MDWLLEPFQMGFQQRALVGGLIAVVMCSVVGTWLVLRGMSFFGDAFVHGVLPGIALAVVT
+GGSPHLGAAVAAVVMMAGISLVHRATTLKEDTAIGLLFVGMMALGVVIISKSDSYTGSLT
+SILFGDVLGVSVDGIVTQAVIAVVVIALALLLYRPLLALSFSEVKARSLGMRPGLTHTLL
+LVMIGAAVIGSFQAVGTVLVFGLLVGPPATAALLTRSVPQMMLVSVVIGAACVVTGLTLS
+YRLGTAGSATMALMPILLFFVVLAVRAAVLALLGRHVRSRAQREQEAP-----------V
+VALPGAEAAR-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001492.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001492.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fdf2cfb8103f4d3473a25de0f6c0170d404b3110
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001492.fa
@@ -0,0 +1,51 @@
+>AS2_ACLBLIBL_02173
+MRFLTSPTVDLTYNDVFLVPSHSEVTSRLDVDIAPDDGTGATIPLVSANMTAVTGRRMVE
+TMARRGGLGILPQDIPVEVIAEVVRRVKSAHPVADTALTVGPQDTVLDLLHLVDRRNHGA
+VCVVDADGGLLGVVRPRDCEDVDRFASAASVMQPASVTLTPAELGEAGGADGGQALRAAF
+DRLNAAGQDMAPVVEPAAGSAAPALRGVVTAAGLLRSSLFTPSLDDAGRLRVGAALGVNG
+AVGDKAAALVEAGVDVLVVDTAHGHQQSMLDALAAVRALDAPVPVVAGNVVSADGVRDLV
+EAGADIVKVGVGPGAMCTTRMQTAVGRPQFSAVLECSAAARDLGARVWADGGVKHPRDVA
+LALAAGASSVMIGSWFAGTLESPGDLVHGPDGRRYKESFGMASARAVQHRTRHEDAFTKA
+RKAMFEEGISSSRMYVDPRRPSVEDLIDTITSGVRSSLTYAGAQDLAQFRERAVVGVQSA
+AGYEEGRPVASSW
+>KBS0714_MOLHKGIG_00757
+MRFLTDPAVDLTYNDVFLVPSHSDVASRMDVDIAPDDGTGATIPLVSANMTAVTGRRMVE
+TMARRGGLGILPQDIPADVIRDVVRRVKAAHPVADTALTVGPQDTVLDLLHLVDRRNHGA
+VCVVDAHGGLLGVVRPQDCEDVDRFTSAASVMHPPAVTLTLAELGGTDGAPDKDALRAAF
+ERLHAAHQEMAPVVDPAVGTAAPVLRGVVTAAGLLRSSLFTPGLDDDGRLRVGAAVGING
+AVGEKAAVLVEAGVDVLVVDTAHGHQQTMLDALAAVRALDPGVPVVAGNVVSGDGVRDLV
+AAGADIVKVGVGPGAMCTTRMQTAVGRPQFSAVLECAAAARELGARVWADGGVKHPRDVA
+LALAAGASSVMIGSWFAGTLESPGDLVHGPDGRRYKESFGMASARAVQHRTRHEDAFTKA
+RKAMFEEGISSSRMYVDPRRPSVEDLLDTITSGVRSSLTYAGAHDLAEFRERAVVGLQSA
+AGYEEGRPVASSW
+>KD337_NAFOICDF_02068
+MRLMHEPAVDLTYNDVFLVPSHSEVGSRTAVDIAPDDGTVGSVPLVSANMTAVTGRRMAE
+TLARRGGLGVLPQDVPVDVVAKTVAAVKAAHAVADTALTVDAHATVLDVLHLVDRRAHGA
+VCVVDDDGRLLGVAGAEDCGDVDRFASVVSVMRTPSVLLSPADL------EGPDAPRAAF
+EVLHAAGRPLAPVVEDPVAD-RPVLRGVVTGQGLVRSSLAAPALDASGRLQVGAALGVNG
+DVGSRAAALLAAGADVLVVDTAHGHQRVMRDALAAVRALDPEVPVVAGNVVTAEGVRDLV
+AAGADVVKVGVGPGAMCTTRMQTAVGRPQFSAVLECAAAAREVGARVWADGGVKHPRDVA
+LALAAGASQVMIGSWFAGTLESPGDLVQGSDGRRYKESFGMASARAVEHRTRDEDAFSRA
+RKAMFEEGISSSRMYVDPRRPSVEDLVDGITAGLRSSLTYAGAANLAQFRERAVVGVQSA
+AGYEEGRPVPASW
+>SA211_MHAAABBN_00487
+MRFLTDPAVDLTYNDVFLVPSHSDVASRMDVDIAPDDGTGATIPLVSANMTAVTGRRMVE
+TMARRGGLGILPQDIPADVIRDVVRRVKAAHPVADTALTVGPQDTVLDLLHLVDRRNHGA
+VCVVDAHGGLLGVVRPQDCEDVDRFTSAASVMHPPVVTLTLAELGGTDGAPSKDALRAAF
+ERLHAAHQEMAPVVDPAVGTAAPVLRGVVTAAGLLRSSLFTPGLDDDGRLRVGAAVGING
+AVGEKAAVLVEAGVDVLVVDTAHGHQRTMLDALAAVRALDPGVPVVAGNVVSGDGVRDLV
+AAGADIVKVGVGPGAMCTTRMQTAVGRPQFSAVLECAAAARELGARVWADGGVKHPRDVA
+LALAAGASSVMIGSWFAGTLESPGDLVHGPDGRRYKESFGMASARAVQHRTRHEDAFTKA
+RKAMFEEGISSSRMYVDPRRPSVEDLLDTITSGVRSSLTYAGAHDLAEFRERAVVGLQSA
+AGYEEGRPVASSW
+>TT9_LFPAFLNI_00721
+MRFLTDPAVDLTYNDVFLVPSHSDVASRMDVDIAPDDGTGATIPLVSANMTAVTGRRMVE
+TMARRGGLGILPQDIPADVIRDVVRRVKAAHPVADTALTVGPQDTVLDLLHLVDRRNHGA
+VCVVDAHGGLLGVVRPQDCVGVDRFASATSVMHPPAVTLTLAELGGTDGAPSKDALRAAF
+ERLHAAHQEMAPVVDPAVGTAAPVLRGVVTAAGLLRSSLFTPGLDDDGRLRVGAAVGING
+AVGEKAAVLVEAGVDVLVVDTAHGHQRTMLDALAAVRALDPGVPVVAGNVVSGDGVRDLV
+AAGADIVKVGVGPGAMCTTRMQTAVGRPQFSAVLECAAAARELGARVWADGGVKHPRDVA
+LALAAGASSVMIGSWFAGTLESPGDLVHGPDGRRYKESFGMASARAVQHRTRHEDAFTKA
+RKAMFEEGISSSRMYVDPRRPSVEDLLDTITSGVRSSLTYAGAHDLAEFRERAVVGLQSA
+AGYEEGRPVASSW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001493.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001493.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5a72c725ae3b3f52e82eda2864d1794446ae6e35
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001493.fa
@@ -0,0 +1,85 @@
+>AS2_ACLBLIBL_02174
+MLRKRRYTVPELTSDRLAQEFPGNERLVAEIYRKYRADSGSVDRQWAQIFARLEASAPAPA---E--KAPAQAAAKAAPK
+AEPQAEAKVTEPKAKPAPARGAQPKETSTSTGPKVKKTPAAQAVPSEPADPSKDAAKEEKQEKATVLKGMAKAVATNMDA
+SLSMPTATTVRDVPAKVLIDNRVVINSHLARTRGGKVSFTHLIGYAVVRALAAMPSMNVTYEERDGKPTMVEPAHVNFGL
+AIDLPRPDGSRSLVVPNVKAAETLDFRGFWQAYDDLVQRARKNKLTMDDYAGTTVSLTNPGGIGTVHSVPRLSKGQAAII
+GVGALTYPAAFQGAAESTLHDLAISKTITLTSTYDHRVIQGAGSGEFLKIVHGLLLGEDGFYDEVFHSLRIPYEPVRWAQ
+DLQVNPEEQVGKVARVQQLIHAYRDRGHLMANVDPLEYSMPYHPDLDIREHGLTLWDLDRQWPTGGFGGASTLTLRKILG
+VLRDAYCRTIGVEYMHIQDPAERAWFQEKLEQPYAKPTREEQLRILGRLNAAEAFETFLQTKYIGQKRFSLEGGESLIPL
+LDGILGDAADAGLDEVAIGMAHRGRLNVLTNIAGKTYGQVFREFEGATPGGTSGSGDVKYHMGTEGTFVSDAGNSTRVYL
+AANPSHLEAVDPVLEGVVRAKQDRLDLGGQRPDSFSVLPILVHGDAAFAGQGVVTEVLQLSQLPGYRTGGTIHVIVNNQV
+GFTTPPTQARSAVYSTDVAKTIQAPILHVNGDEPESVMHVAELAFEYRQRFNKDVVIDLVCYRRRGHNEGDDPSMTQPRM
+YNLIEQKRSTRKLYVESLVGRGDITQEEADTALKDYQQQLERVFAETH--EGSASSGGEGIRPAEDRDQAPEAPETTAIS
+AETLRAIGQAHIDVPEGFTVHPKLAALLERRAKMAVDGGIDWGFAELAAFGSLLMEGVPVRLAGQDSQRGTFTQRHSVFH
+DRITGDEWAPLKNLSEDQAKFWVYNSLLSEYAALGFEYGYSVERSDALVLWEAQFGDFINGAQTIIDEFISSAEQKWAQT
+SSVVLLLPHGYEGQGPDHSSARIERFLQMCAEDNMRVVNPTTGANHFHLLREQAYARPRRPLVVFTPKQLLRLKAAANSV
+EDFTEGRFQPVIPDAGVDPKKVTRVQLVSGRLYYDLLARRNKDGDETTAIVRVEQLYPLPLDELRAALEAYPQAEVVWVQ
+DEPANQGPWPFMALNLLPQLDREVRLVSRPASASTSAGTKGRHDQELSTLLDAGFAR
+>KBS0714_MOLHKGIG_00756
+--------MPELTSDRLAQEFPGNERLVAEIYRKYREDSGSVDRQWAQIFARLEASAPAAE---AEPKAAAKTEPKTAAK
+AEPKATAKVTEPKAATAPARGAQPKETSVSTGPKPKKTPAAQAVPSEPADTATTTA-DEKQEKATVLKGMAKAVATNMDA
+SLSMPTATTVRDLPAKVLIDNRVVINSHLARTRGGKVSFTHFIGYAVVRALAAMPSMNVTYEERDGKPTMVEPAHVNFGL
+AIDLPRPDGTRALVVPNVKAAETLDFRGFWKAYDDLVQRARKNKLTMDDYAGTTVSLTNPGGIGTVHSVPRLSQGQAAII
+GVGALTYPAAFQGAAESTLHDLAISKTITLTSTYDHRVIQGAGSGEFLKIVHGLLLGEDGFYDEVFHSLRIPYEPVRWAQ
+DVQVNPEEQIGKVARIQQLIHAYRDRGHLLANVDPLEYSMAYHPDLDIREHGLTLWDLDRKWPTGGFGGAGSLTLRKILG
+VLRDAYCRTIGVEYMHIQDPAERAWFQEKLEQPYAKPTREEQLRILGRLNAAEAFETFLQTKYIGQKRFSLEGGESLIPL
+LDGILGDAADAGLDEVAIGMAHRGRLNVLTNIAGKTYSQVFREFEGATPGGASGSGDVKYHMGTEGTFVSDAGNSTRVYL
+AANPSHLEAVDPVLEGVVRAKQDRLDLGGQRPDSFSVLPILVHGDAAFAGQGVVTEVLQLSQLPGYRTGGTIHVVVNNQV
+GFTTPPTQARSAVYSTDVAKTIQAPIFHVNGDEPESVVHVAQLAFEYRQRFNKDVVIDLVCYRRRGHNEGDDPSMTQPRM
+YNLIEQKRSTRKLYVESLVGRGDITQEEADSALKDYQQQLERVFAETH--EDAPASGGEGLRPAEDRDAAPEAPASTAIS
+AETLRAIGQAHIDVPEGFTVHPKLAALLERRAKMAVDGGIDWGFAELAAFGSLLMERVPVRLAGQDSQRGTFTQRHSVFH
+DRITGDTWAPLRHLSEDQAKFWVYNSLLSEYAALGFEYGYSVERSDALVLWEAQFGDFVNGAQTIIDEFISSADQKWSQT
+SSVVLLLPHGYEGQGPDHSSARIERFLQMCAEDNMRVVNPSTGANHFHLLREHAYARPRRPLIVFTPKQLLRLKAAANSV
+EDFTEGGFQPVIPDAGVDAKDVTRVLLVSGRLYYDLLARRQKSGDTSTAIVRVEQLYPLPLDEIRKALRAYPVADVTWVQ
+DEPANQGPWPFMALNLVPQLDVPVTLVSRPASAATSAGTKGRHDQELSTLLDAAFGR
+>KD337_NAFOICDF_02069
+--------MPELTSDRLSQEFPGNEDLVAQIYRKYREDQGAVDRQWAQIFARLEASQPQPEPAAAAPKATSSATAEPAPA
+VKPAVKRGAATPADPQAAAKKSGPTDVS---APAQRKRSVSEAVPSEPARDAAAGA-SEKQDKATVLKGMAKAVATNMDA
+SLSMPTATTVRDLPAKLLIDNRTVINSHLARTRGGKVSFTHLIGYAVVRALKAMPSMNTLYEERDGKPTMVEPAHVNFGL
+AIDLPKPDGTRALVVPNIKAAETLSFRQFWEAYDDLVKRGRANKLTMDDYAGTTVSLTNPGGIGTVHSVPRLSKGQAAII
+GVGALTYPAAFQGAAESTLNSLAISKTITLTSTYDHRVIQGAGSGEFLKLIHGYLLGEDGFYDDVFHDLRIPYEPVRWAQ
+DVQVNPEEQIGKVARIQQLIHAYRDRGHLLANVDPLEYRMPTHPDLDIREHGLTLWDLDREWPTGGFGGADTLTLRRILG
+VLRDAYCRTVGVEYMHIQNPAERAWFQDKLERPYEKPSREEQLRILGRLNAAEAFETFLQTKYIGQKRFSLEGGESLIPL
+LDSILGDAADEGLDEVAIGMAHRGRLNVLTNIAGKTYSQVFREFEGATPGGASGSGDVKYHMGTEGTFVSDAGNSTRVYL
+AANPSHLEAVDPVLEGVARAKQDRLEAAGESGAAFPVLPILVHGDAAFAGQGVVTEVLNLSQLPGYRTGGTIHVVVNNQV
+GFTTSPAEGRSSVYATDVAKTIQAPILHVNGDEPESVLRVARLAYEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPRM
+YTLIEQKRSTRKLYVESLVGRGDITQEEADTALKDYQQQLERVFAETHAAETGQAVATTGLEPARDRDAARPAPSTTAIS
+PDTLRRIGDVHLEVPEDFTVHPKLSQLLEKRAKMAVDGGIDWGFAELAAFGSLLMEGVPVRLSGQDSQRGTFTQRHSVFH
+DRVTDETWTPLNHLSESEAPFWVYNSLLSEYAVLGFEYGYSVERSDALVLWEAQFGDFINGAQTMIDEFISSAEQKWSQN
+SSVVLLLPHGYEGQGPDHSSARIERFLQMCAEDNMRVVNPSHGANHFHLLREQAYSRPRRPLVVFTPKQLLRLKAAADPV
+EAFTQGGFRKVIGDASVDAAQVERVILVSGRLYYDLLARREKSGDTSTAIVRVEQLYPLPAEEIRAELAKYPGAQVRWVQ
+DEPANQGPWPFMALNLLPQLDREVTLVSRPALAATSAGTKGRHDEELSTLLDTAFGA
+>SA211_MHAAABBN_00486
+--------MPELTSDRLAQEFPGNERLVAEIYRKYREDSGSVDRQWAQIFARLEASAPAAE---AEPKAAAKTEPKTAAK
+AEPKATAKVTEPKAATAPARGAQPKETSVSTGPKPKKTPAAQAVPSEPADTATTTA-DEKQEKATVLKGMAKAVATNMDA
+SLSVPTATTVRDLPAKVLIDNRVVINSHLARTRGGKVSFTHLIGYAVVRALAAMPSMNVTYEERDGKPTMVEPAHVNFGL
+AIDLPRPDGTRALVVPNVKAAETLDFRGFWKAYDDLVQRARKNKLTMDDYAGTTVSLTNPGGIGTVHSVPRLSQGQAAII
+GVGALTYPAAFQGAAESTLHDLAISKTITLTSTYDHRVIQGAGSGEFLKIVHGLLLGEDGFYDEVFHSLRIPYEPVRWAQ
+DVQVNPEEQIGKVARIQQLIHAYRDRGHLLANVDPLEYSMAYHPDLDIREHGLTLWDLDRQWPTGGFGGASSLTLRKILG
+VLRDAYCRTIGVEYMHIQDPAERAWFQEKLEQPYAKPTREEQLRILGRLNAAEAFETFLQTKYIGQKRFSLEGGESLIPL
+LDGILGDAADAGLDEVAIGMAHRGRLNVLTNIAGKTYSQVFREFEGATPGGASGSGDVKYHMGTEGTFVSDAGNSTRVYL
+AANPSHLEAVDPVLEGVVRAKQDRLDLGGQRPDSFSVLPILVHGDAAFAGQGVVAEVLQLSQLPGYRTGGTIHVIVNNQV
+GFTTPPTQARSAVYSTDVAKTIQAPILHVNGDEPESVVHVAQLAFEYRQRFNKDVVIDLVCYRRRGHNEGDDPSMTQPRM
+YNLIEQKRSTRKLYVESLVGRGDITQEEADSALKDYQQQLERVFAETH--EDAPASGGEGLRPAEDRDAAPEAPASTAIS
+AETLRAIGQAHIDVPEGFTVHPKLAALLERRAKMAVDGGIDWGFAELAAFGSLLMEGVPVRLAGQDSQRGTFTQRHSVFH
+DRITDETWAPLKHLSEDQAKFWVYNSLLSEYAALGFEYGYSVERSDALVLWEAQFGDFVNGAQTIIDEFISSADQKWSQT
+SSVVLLLPHGYEGQGPDHSSARIERFLQMCAEDNMRVVNPSTGANHFHLLREQAYARPRRPLVVFTPKQLLRLKAAANSV
+EDFTEGRFQPVIPDAGVDAKDVTRVLLVSGRLYYDLLARREKSGDTSTAIVRVEQLYPLPLEEIRKALRAYPDADVAWVQ
+DEPANQGPWPFMALNLVPQLDVPVTLVSRPASAATSAGTKGRHDQELSTLLDAAFGR
+>TT9_LFPAFLNI_00720
+--------MPELTSDRLAQEFPGNERLVAEIYRKYREDSGSVDRQWAQIFARLEASAAAAE---AEPKAAAEAEPKAAAR
+AEPKATAKVTEPKAATAPARGAQPKETSVSTGPKAKKTPAAQAVPSEPADTATTTA-DEKQEKATVLKGMAKAVATNMDA
+SLSMPTATTVRDLPAKVLIDNRVVINSHLARTRGGKVSFTHLIGYAVVRALAAMPSMNVTYEERDGKPTMVEPAHVNFGL
+AIDLPRPDGTRALVVPNVKAAETLDFRGFWKAYDDLVQRARKNKLTMDDYAGTTVSLTNPGGIGTVHSVPRLSQGQAAII
+GVGALTYPAAFQGAAESTLHDLAISKTITLTSTYDHRVIQGAGSGEFLKIVHGLLLGEDGFYDEVFHSLRIPYEPVRWAQ
+DVQVNPEEQIGKVARIQQLIHAYRDRGHLLANVDPLEYSMAYHPDLDIREHGLTLWDLDREWPTGGFGGASSLTLRKILG
+VLRDAYCRTIGVEYMHIQDPAERAWFQEKLEQPYAKPTREEQLRILGRLNAAEAFETFLQTKYIGQKRFSLEGGESLIPL
+LDGILGDAADAGLDEVAIGMAHRGRLNVLTNIAGKTYSQVFREFEGATPGGASGSGDVKYHMGTEGTFVSDAGNSTRVYL
+AANPSHLEAVDPVLEGVVRAKQDRLDLGGQRPDSFSVLPILVHGDAAFAGQGVVTEVLQLSQLPGYRTGGTIHVIVNNQV
+GFTTPPTQARSAVYSTDVAKTIQAPIFHVNGDEPESVVHVAQLAFEYRQRFNKDVVIDLVCYRRRGHNEGDDPSMTQPRM
+YNLIEQKRSTRKLYVESLVGRGDITQEEADSALKDYQQQLERAFAETH--EDAPTSGDEGIRPAEDRDAAPKAPASTAIS
+AEMLRAIGQAHLDVPEGFTVHPKLAALLERRAKMAVDGGIDWGFAELAAFGSLLMEGVPVRLAGQDSQRGTFTQRHSVFH
+DRITGDTWAPLKHLSEDQAKFWVYNSLLSEYAALGFEYGYSVERSDALVLWEAQFGDFVNGAQTIIDEFISSADQKWSQT
+SSVVLLLPHGYEGQGPDHSSARIERFLQMCAEDNMRVVNPSTGANHFHLLREHAYARPRRPLIVFTPKQLLRLKAAANSV
+EDFTEGRFQPVIPDAGVDAKDATRVLLVSGRLYYDLLARRQKSGDTSTAIVRVEQLYPLPLEEIRKALRAYPDADVAWVQ
+DEPANQGPWPFMALNLVPQLDVPVTLVSRPASAATSAGTKGRHDQELSTLLDAAFGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001495.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001495.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a3b6d57939d9700a090de2793841deb1db9e1b09
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001495.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02176
+MTADQHGRECRDAQEDTLERLYQYLDGALTPEEIDQVRAHVEDCEDCRHQQELEQFIRTA
+VRRSCQEKAPEQLRTTILTRITQLSTTRV-TWR
+>KBS0714_MOLHKGIG_00754
+MTADQHGHECRVAQDASLERLYQYLDGALTPEDIEQVRAHVAECPDCRHQKELEELIRSA
+VRRCCQEKAPAQLRATIMTRITQISTTTV-TWG
+>KD337_NAFOICDF_02071
+MSQDGDCRGCNDGED-RLEQLYQYLDGALTPEDIDQVRAHVDQCPDCHHQQELELIIRSA
+LRRSCQEKAPAQLRATIMTRITQVSTTTVRRAG
+>SA211_MHAAABBN_00484
+MTVDQHGHECRDAQDASLERLYQYLDGALTPEDIEQVRAHVADCPDCRHQKELEELIRSA
+VRRCCQEKAPAQLRATIMTRITQTPMTTV-TWG
+>TT9_LFPAFLNI_00718
+MTADQHGHECRDAQDASLERLYQYLDGALTPEDIEQVRAHVADCPDCRHQKELEELIRSA
+VRRCCQEKAPAQLRATIMTRITQTPMTTV-TWG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001503.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001503.fa
new file mode 100644
index 0000000000000000000000000000000000000000..136f4b504ba730d365153f8ae89860c75714c0a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001503.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02187
+MTAELPQPQPTDAVIVGGARTPFTRLLSQQADLRAVDLGAHAITHALECAGVAPEDVDMV
+YMGQVVQAGAGQNPARQSALAAGIPWNVPAMTINKVCLSGLTAVIDAARLVRLGEADVVV
+AGGQESMTNAPHLLPGARKGFKYGPATMLDAVAWDGLTDSLSHEAMGELTESGNGERNIA
+RAEQDEVAAASHQRAARAQSEGVFEGEIAPVEVPQRKGDPLVVSQDEGVRPDTTAESLGA
+LRPAFAKDGTITAGNSSPLSDGAAALVVTSRAYAEEKGLTILATVGALGQTAGPDSSQLH
+SQPSDAINAAMRKQGWDVADLDFIEINEAFGAVAVQSLRDLDYPHEKTNIHGGAIALGHP
+IGASGARLALHAALELDRRDGGRAAVSLCGGGGQGEALILFR
+>KBS0714_MOLHKGIG_00742
+MTAELPQPQPTDAVIVGGARTPFTRLLSQQADLRAVDLGAHAITHALERAGVAPEDVDMV
+YMGQVVQAGAGQNPARQSALAAGIPWNVPAMTINKVCLSGLTAVIDAARLIRLGEADVVV
+AGGQESMTNAPHLLPGARKGFKYGPATMLDAVAWDGLTDSLSHEAMGELTESGNGERNIA
+RAEQDEVAAASHQRAARAQSEGVFEGEIAPVEVPQRKGDPLVVSQDEGVRPDTTAESLGA
+LRPAFAKDGTITAGNSSPLSDGAAALVVTSRAFAEEKGLTILATVGAPGQTAGPDSSQLH
+SQPSDAINAAVRKQGWDVADLDFIEINEAFGAVAVQSLRDLDYPHEKTNIHGGAIALGHP
+IGASGARLALHAALELDRRDGGRAAVSLCGGGGQGEALILFR
+>KD337_NAFOICDF_02085
+MTAELPQPQPTDAVIVGGARTPFTRLLSQQADLRAVDLGAHAITHALERAGVAPEDVDMV
+YMGQVVQAGAGQNPARQSALAAGIPWNVPAMTINKVCLSGLTAVIDAARLIRLGEADVVV
+AGGQESMTNAPHLLPGARKGFKYGPATMLDAVAWDGLTDSLSHEAMGELTESGNGERNIA
+RAEQDEVAAASHQRAARAQSQGVFEGEIAPVEVPQRKGDPLVVSQDEGVRPDTTAESLGS
+LRPAFAKDGTITAGNSSPLSDGAAALVVTSRAFAEEKGLTVLATVGAPGQTAGPDSSQLH
+SQPSDAINAAVRKQGWDVADLDFIEINEAFGAVAVQSLRDLGYPHEKTNIHGGAIALGHP
+IGASGARLALHAALELDRRDGGRAAVSLCGGGGQGEALILFR
+>SA211_MHAAABBN_00473
+MTAELPQPQPTDAVIVGGARTPFTRLLSQQADLRAVDLGAHAITHALERAGVAPEDVDMV
+YMGQVVQAGAGQNPARQSALAAGIPWNVPAMTINKVCLSGLTAVIDAARLIRLGEADVVV
+AGGQESMTNAPHLLPGARKGFKYGPATMLDAVAWDGLTDSLSHEAMGELTESGNGERNIA
+RAEQDEVAAASHQRAARAQSEGVFEGEIAPVEVPQRKGDPLVVSQDEGVRPDTTAESLGA
+LRPAFAKDGTITAGNSSPLSDGAAALVVTSRAFAEEKGLTILATVGAPGQTAGPDSSQLH
+SQPSDAINAAMRKQGWDVADLDFIEINEAFGAVAVQSLRDLDYPHEKTNIHGGAIALGHP
+IGASGARLALHAALELDRRDGGRAAVSLCGGGGQGEALILFR
+>TT9_LFPAFLNI_00707
+MTAELPQPQPTDAVIVGGARTPFTRLLSQQADLRAVDLGAHAITHALERAGVAPEDVDMV
+YMGQVVQAGAGQNPARQSALAAGIPWNVPAMTINKVCLSGLTAVIDAARLIRLGEADVVV
+AGGQESMTNAPHLLPGARTGFKYGPATMLDAVAWDGLTDSLSHEAMGELTESGNGERNIA
+RAEQDEVAAASHQRAARAQSEGVFEGEIAPVEIPQRKGDPLVVSQDEGVRPDTTAESLGA
+LRPAFAKDGTITAGNSSPLSDGAAALVVTSRAFAEEKGLTILATVGAPGQTAGPDSSQLH
+SQPSDAINAAVRKQGWDVADLDFIEINEAFGAVAVQSLRDLGYPHEKTNIHGGAIALGHP
+IGASGARLALHAALELDRRDGGRAAVSLCGGGGQGEALILFR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001504.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001504.fa
new file mode 100644
index 0000000000000000000000000000000000000000..234977dbb3582f6f19c60830bace6abe2f2fc0f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001504.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02188
+MTMRAARWHGKKDIRIEEIASPTAGPGQVLVDVAWCGICGTDLHEYLEGPIFIPPAGHPH
+PISGDAAPVTLGHEMSGTVAALGEGVTDLEVGQKVVVEPYIVREEDQDRPDYNLAPDMNF
+IGLGGDGGGLAEQIAVRRRWVHPVADSVPLDQAALIEPLSVAHHAWVRAGSPTSGVAVIG
+GAGPIGALTAAVLKGKGLTVYVSELSELRRQKVLEAGVVDEAFDPREVDVPAKIRELHDG
+QGADVGFECTSVDVVLDMLLDAVRPGGVIVNESIWGHEPAVALHKLVLKEIDLRGTIAYA
+NDHADTIRMVEDGTVDLAPFITGKIGLDDLVDQGFETLIHHNETAVKILVSPTGQGL
+>KBS0714_MOLHKGIG_00741
+MTMRAARWHGKKDIRIEEIDSPTAGPGQVLVDVAWCGICGTDLHEYLEGPIFIPPAGHPH
+PISGDAAPVTLGHEMSGTVAALGEGVTDLEVGQKVVVEPYIVREEDRDRPDYNLAPDMNF
+IGLGGDGGGLAEQIAVQRRWVHPVADSVPLDQAALIEPLSVAHHAWVRAGSPTSGVAVIG
+GAGPIGALTAAVLKGKGLTVYVSELSELRRRKVLEAGVVDEAFDPREVDVPAKIRELHDG
+QGADVGFECTSVDVVLDMLLDAVRPGGVIVNESIWGHEPAVALHKLVMKEIDLRGTIAYA
+NDHADTIRMVEDGAVDLAPFITGKIGLDDLVDRGFETLIHHNETAVKILVSPTGQGL
+>KD337_NAFOICDF_02086
+MTMRAARWHGKKDIRIEEIDSPTAGPGQVLVDVAWCGICGTDLHEYLEGPIFIPPAGHPH
+PISGDAAPVTLGHEMSGTVAALGEGVTDLEVGQKVVVEPYIVREEDRDRPDYNLAPDMNF
+IGLGGDGGGLAEQIAVQRRWVHPVADSVPLDQAALIEPLSVAHHAWVRAGSPTSGVALIG
+GAGPIGALTAAVLKGKGLTVYVSELSELRRRKVLEAGVVDEAFDPREVDVPAKIRELHDG
+QGADVGFECTSVDVVLDMLLDAVRPGGVIVNESIWGHEPAVALHKLVMKEIDLRGTIAYA
+NDHADTIRMVEDGAVDLTPFITGKIGLDDLVDQGFETLIHHNETAVKILVSPTGQGL
+>SA211_MHAAABBN_00472
+MTMRAARWHGKKDIRIEEIDSPSAGPGQVLVDVAWCGICGTDLHEYLEGPIFIPPAGHPH
+PISGDAAPVTLGHEMSGTVAALGEGVTDLEVGQKVVVEPYIVREEDRDRPDYNLAPDMNF
+IGLGGDGGGLAEQIAVQRRWVHPVADSVPLDQAALIEPLSVAHHAWVRAGSPTSGVAVIG
+GAGPIGALTAAVLKGKGLTVYVSELSELRRRKVLEAGVVDEAFDPREVDVPAKIRELHDG
+QGADVGFECTSVDVVLDMLLDAVRPGGVIVNESIWGHEPAVALHKLVMKEIDLRGTIAYA
+NDHADTIRMVEDGAVDLAPFITGKIGLDDLVDQGFETLIHHNETAVKILVSPTGQGL
+>TT9_LFPAFLNI_00706
+MTMRAARWHGKKDIRIEEIDSPTAGPGQVLVDVAWCGICGTDLHEYLEGPIFIPPAGHPH
+PISGDAAPVTLGHEMSGTVAALGEGVTDLEVGQKVVVEPYIVREEDRDRPDYNLAPDMNF
+IGLGGDGGGLAEQIAVQRRWVHPVADSVPLDQAALIEPLSVAHHAWVRAGSPTSGVAVIG
+GAGPIGALTAAVLKGKGLTVYVSELSELRRQKVLEAGVVDEAFDPREVDVPAKIRELHDG
+QGADVGFECTSVDVVLDMLLDAVRPGGVIVNESIWGHEPAVALHKLVMKEIDLRGTIAYA
+NDHADTIRMVEDGAVDLAPFITGKIGLDDLVDQGFETLIHHNETAVKILVSPTGQGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001506.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001506.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e1cbd0666b0a4c1f3ca62a14a25c2c1905e199f9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001506.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02192
+M-----------RALSALRRDDGQTTVLTVGLCALLIGLMLVMLAATTVQLQHRRLQSLA
+DGAALAGAEELGFRLGEDPGVVLDDGDVAASAAAHLDAVDAASSVHGLGGMAAGVADDGA
+TVTVRLDAEVDLL-AAAGPFAGMLPLSVPIQATGDSRTSLSR
+>KBS0714_MOLHKGIG_00738
+M---------RRRLTARLGHDDGQTTVLTVGLCAVLVALMLVMLAVTTVQLQHRRLQSLA
+DSAAIAGAEELGFRLGEDPGVVLSDDDVAASASAHLAAVGAQEAVPGLGGMNARVADDGT
+TVVVTLDARADLF-AMTGPFAGTLPLSVPLEATGSSRTSLAR
+>KD337_NAFOICDF_02091
+MTRRHRSRPQRRPDRRHGAHERGEITVLTLGLSAIVVGLLLVVLSATLVLIQARKVQSLA
+DGAALAGAEQLAFQLDADPRVVLEPGSVQASVNEHLDAVGARESVPGLESVSAQVAGDGA
+TVVVRARAKVTLVPSGAGWLADLIPASVPVSAEGSSRTVLTR
+>SA211_MHAAABBN_00469
+M---------SRRLTARLGHDDGQTTVLTVGLCAVLVALMLVMLAVTTVQLQHRRLQSLA
+DSAAIAGAEELGFRLGEDPGVVLSDDDVAASASAHLAAVGAQEAVPGLGGMNARVADDGT
+TVVVTLDARADLF-AMTGPFAGTLPLSVPLEATGSSRTSLAR
+>TT9_LFPAFLNI_00702
+M---------RRPLTARLGHDDGQTTVLTVGLCAVLVALMLVMLAVTTVQLQHRRLQSLA
+DSAAVAGAEELGFRLGEDPGVVLSDGDVAASASAHLAAVGAREAVPGLGGMSARVAEDGT
+TVVVTLDARADLF-AMTGPFAGTLPLSVPLEATGSSRTSLAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001507.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001507.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c8ad3bed95a5ef8958c686a87015c5c6668e10c5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001507.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02193
+MPIASDVR--------------DERGSATVEFLGLTLVLLIPVVYLMIYVSQVQAAAFAS
+VAAADQAAKVVVSGTEGRSAAQAHAAVRLTLADFGIDYGAYELDLGCSAGDCVSLDPGEV
+VQARVDVEVPIPLTPADW-SLAPVTVGSDARQAVPRF
+>KBS0714_MOLHKGIG_00737
+MRSVNDVR--------------DERGAATVEFLGLTLVLLIPVVYLMIYVSQVQAAAFAS
+VAAADQAVKAVVAEADHPSAGAAHATVELTLADYGVGAGQYDLTVGCDQGGCGTLEPGEV
+VAVRVDVGVPVPLTPAAW-SLTPVTVGSDARQTVPRF
+>KD337_NAFOICDF_02092
+MPSATDARHGPTHAPWRGTDLADDVGSATVEFLGLSLILLIPLAYLMLFVSQVQAAAFGA
+LASADQAARVMVSG-EGGNPGQAEGTIPLTLADYGFDAADAEWSVACDVGGCGTLEPGEV
+VDVTVAISLDPPLLPDGWVSVDIATVDSHSRARMPRF
+>SA211_MHAAABBN_00468
+MRSVNDVR--------------DERGAATVEFLGLTLVLLIPVVYLMIYVSQVQAAAFAS
+VAAADQAVKAVVAEADHPSAGAAHATVELTLADYGVGAGQYDLTVGCDQGGCGTLEPGEV
+VAVRVDVGVPVPLTPAAW-SLTPVTVGSDARQTVPRF
+>TT9_LFPAFLNI_00701
+MRSVNDVR--------------DERGAATVEFLGLTLVLLIPVVYLMIYVSQVQAAAFAS
+VAAADQAVKAVVAEADHPSAGAAHATLELTLADYGVGAGQYDLTVGCDQGGCGTLEPGEV
+VAVRVDVAVPVPLTPAAW-SMTPVTVGSDARQTVPRF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001509.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001509.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e9558fc956905047ee3e55eefe91571e020b1ccf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001509.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02195
+MLHHHVISILTALRGLLHDDVRDDRGDVPGWVMITLMSAVLVAALLTLALPALTDLFDQA
+ISQVTQGE-
+>KBS0714_MOLHKGIG_00735
+MLHHHAITVLAALRALIHDDVRDERGDVPGWVMITLMSAVLVAGLLALALPALQGLFNQA
+ISQVSQGG-
+>KD337_NAFOICDF_02094
+MLTNAYLTVVSALTSLLHDDARDERGDVPGWVMITLMSAALVVALLGLAMPALKAMFDQA
+ITQVNNAAG
+>SA211_MHAAABBN_00466
+MLHHHAITVLAALRALIHDDVRDERGDVPGWVMITLMSAVLVAGLLALALPALQGLFNQA
+ISQVSQGG-
+>TT9_LFPAFLNI_00699
+MLHHHAITVLAALRALIHDDVRDERGDVPGWVMITLMSAVLVAGLLALALPALEGLFNQA
+ISQVSQGG-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001511.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001511.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2908a2a3e8ae20fd6785325d1e040dfc0150b6fd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001511.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02219
+MSASLLWAALLGLTLGAGLLLIAVAQPLGWRPTLEQRVEPQLRHHTPASRLLEDEEAGAS
+PWGAWGRILDPVLRAGVGWLHRLSPAGETLERKLAAAGMTVSAADFRAQQVLSAAAGAGI
+ATAFSVALALAGRIPVVTGVGFVIVGGMAGYLLRDQLLSLRVQRRRAAILTEFPSVAELF
+ALSVGAGESAAGALERIATTARGELAGEFRATLAEMRAGSSLSAALKSMGRRVQLAPVER
+FIGGILIALDRGTPLADVLRAQAQDVREMGRRELMEAAGRKEIQMMVPIV----------
+-----------TR
+>KBS0714_MOLHKGIG_00734
+MTSALIWAALLGLTLGAGLLLILVTQPVGWRPSLEQRVEPQLRHHIPASRLLEEERAGAS
+PWGTWGRILDPVVQAGVGWVQRISPGGAALDRKLAAAGLAVTSTDFRAQQVLSGAAGAAV
+AAVLALSLTVTGRVPVITGVALVIAGGMAGFLLREQLLSLRVRRRREAILSEFPSVAELF
+ALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAALKAMGRRVQLAPVER
+FIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEAAGRKEIQMMVPLVFGILPLTVIF
+AVFPGISLMRLGF
+>KD337_NAFOICDF_02095
+MSGGLLWGIALGLVMAAGVWLIVTAQPWGWRPSLEERIEPQLRHHVPASRLLADGRATST
+PWGTWGRLLGPSLAGATRGLQRLSPAGESLTLKLQAAGSELSVMDFRAQQVLCAVIATAA
+GTVLSVLLTLAGAVPVVSGVALVVAAGLSGYVLRDQMLTWAVARRRTAILTEFPSVAELF
+ALSVGAGESATGAMERIVRSARGEMAGEFDRTLADVRAGASLSSALKAMGRRVQLEPVER
+FIGGILIALDRGTPLADVLRAQAQDVRELGRRELMESAGRKEIQMMVPLVFGILPLTVVF
+AIFPGLALLRLSF
+>SA211_MHAAABBN_00465
+MTSALIWAALLGLTLGAGLLLILVTQPVGWRPSLEQRVEPQLRHHIPASRLLEEERAGAS
+PWGTWGRILDPVVQAGVGWVQRISPGGAALDRKLAAAGLAVTSTDFRAQQVLSAAAGAAV
+AAVLALSLTVTGRVPVITGVALVIAGGMAGFLLREQLLSLRVRRRREAILSEFPSVAELF
+ALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAALKAMGRRVQLAPVER
+FIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEAAGRKEIQMMVPLVFGILPLTVIF
+AVFPGISLMRLGF
+>TT9_LFPAFLNI_00698
+MTSALIWAALLGLTLGAGLLLILVTQPVGWRPSLEQRVEPQLRHHIPASRLLEEERAGAS
+PWGAWGRILDPVVQAGVGWVQRISPGGVALDRKLAAAGLAVTSADFRAQQVLSAAAGAAV
+AAVLALSLTVTGRVPVITGVALVIAGGMAGFLLRDQLLSLRARRRREAILSEFPSVAELF
+ALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAALKAMGRRVQLAPVER
+FIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEAAGRKEIQMMVPLVFGILPLTVIF
+AVFPGISLMRLGF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001514.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001514.fa
new file mode 100644
index 0000000000000000000000000000000000000000..979b77296c22a295cfa85fb6942c84d44f66c6b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001514.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02223
+MAQILLFHHALGLTDGVRALAAQI-EAGGHTVHTPDLYDGALFTDVEEGIAHVESLGGFD
+VIAERGMRAAAQHPQASVVAGISMGVVAAHKAAQAVPAFRACIDIAGIVPLDAFAPLWQP
+HTALQVHLATRDPWVMDEDLPLARSVAATEEDPDKPAVLFEYDTDAHLFMDSSTDGHDPA
+LTEVLVRRIHELLA
+>KBS0714_MOLHKGIG_00730
+MAQIVLFHHALGLTDGVRALAEQI-ASGGHTVHTPDLYDGRTFATVDEGVAHAQHL-GFE
+EIGRRGMRACAEHQEASVVAGISMGVMPAWRAAQVVPGFRACIAMAGVLALDAYAPLWQP
+HTALQIHLGTRDPWALEGDLATARSYAATAEHPDRPADLFEYDTDRHLFMNSSTADFDAD
+LTAVLVRRIHELLA
+>KD337_NAFOICDF_02099
+MAQIILFHHARGLTEGVLALAEQIEQASGHHVHTPDLFGGAVLPTVEDGLAHLQQI-GQD
+EVMTRAMHACAEHKEASVVAGISMGVMPAWKAAQTAPGFRACIAMSSALPLDAYARLWQP
+HTSLQIHLAAQDPWVKDEDLPLARTYAATAEHPDRPADLFEYETASHLFMDSSTDQYDAR
+HTEVMVERIRELLA
+>SA211_MHAAABBN_00461
+MAQIVLFHHALGLTDGVRALAEQI-AGGGHTVHTPDLYDGRTFATVDEGVAHAQHI-GFE
+EIGRRGMRACAEHQEASVVAGISMGVMPAWRAAQVVPGFRACIAMAGALALDAYAPLWQP
+HTALQIHLGTRDPWALEGDLETARSYAATAEHPDRPADLFEYDTDRHLFMDSSTADFDAD
+LTAVLVRRIHELLA
+>TT9_LFPAFLNI_00694
+MAQIVLFHHALGLTDGVRALAEQI-ASGGHTVHTPDLYDGRTFATVDEGVAHAQHL-GFE
+EIGRRGMRACAEHQEASVVAGISMGVMPAWRAAQVVPGFRACIAMAGVLALDAYAPLWQP
+HTALQIHLGTRDPWALEGDLETARSYAATAEHPDRPADLFEYDTDRHLFMDSSTADFDAD
+LTAVLVRRIHELLA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001516.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001516.fa
new file mode 100644
index 0000000000000000000000000000000000000000..848a273f966e9f32cbb3a30346b152130471a18a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001516.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02229
+MNTAFDAGRLGRTDVLTLQQVTSFMSNDMQVTGPDGQTVATVVTTGGGLGRMVLGSRTFD
+VVDGEDGRVLFRLADPATFGRDRYAIVDADGLPLANLVREFALFRTSVSVEVVDGTRFAV
+TGNLWDHDYTMTVGQAPIARATATFGGFMNALAGRSRYELRLDPGMPPVVRCAVLGTAIA
+LDLIRAKDRRRNN
+>KBS0714_MOLHKGIG_00728
+MSPAFDAGRLAHTDVLILQQVTSFLSNDIQVTDPDGRTVVSVVTTGGGLGRMLMGNRSFD
+VVDGDDGRVLFRLADPATFGRDRFAILDADGLPFANLVRQIAFLRTSVNVEVVDGTCFAV
+TGDLWDHDYAMTVGQQPIARVTARFGGVMNALAGRSRYEMRLDPGMPPVVRCAVLGTAIA
+LDLIRAKDRRSNG
+>KD337_NAFOICDF_02102
+M-TTFDAGRLALVNSLALQQVTSFLSNDMQVLGPDGEVVATVQTQGGGLSRMLMGSRRLL
+VCDGDDGRPLFELQDPATFGRDRFQVLDPAGLPLANLRREVAFFRTAVSVEVVDGTVFRV
+EGDLFDHDYRMIAGEVPIARAVSQWSGFGNALLGRSRYRLELDPAMPPVVRCAVLGTAIA
+LDLLRAKDARRND
+>SA211_MHAAABBN_00459
+MSPAFDAGRLAHTDVLILQQVTSFLSNDIQVTDPDGRTVVSVVTTGGGLGRMLMGNRSFD
+VVDGDDGRVLFRLADPATFGRDRFAILDADGLPLAHLVRQFAFLRTSVNVEVVDGTCFAV
+TGDLWDHDYAMTVGQQPIARVTARFGGVMNALAGRSRYEMRLDPGMPPVVRCAVLGTAIA
+LDLIRAKDRRSNG
+>TT9_LFPAFLNI_00692
+MSPAFDAGRLAHTDVLILQQVTSFLSNDIQVTDPDGRTVVSVVTTGGGLGRMLMGNRSFD
+VVDGDDGRVLFRLADPATFGRDRFAILDADGLPFANLVRQIAFLRTSVNVEVVDGTCFAV
+TGDLWDHDYAMTVGQQPIARVTARFGGVMNALAGRSRYEMRLDPGMPPVVRCAVLGTAIA
+LDLIRAKDRRSNG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001517.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001517.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7ecc1a08b05f9409ac85b4a6f638612e007af3ec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001517.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02231
+MQFGVFTIGDVTQDPTTGTTPTEHQRIKDTVRIAQHAAQAGFEVFATGQHHNPPFVAPGN
+PPTLLAYLAAMTTDLQLSTATTLITTMDPVRLAEDYSYLQHLADGRVDLTMGRGNTGPVY
+PWFGKDIRQGIPLAVENYNLLYRLWHEETVDWSGKFRSPLQNFTLTPQPLDGVAPFVWHG
+SIRSAEIAEQAAYYGDGFFYNNIFWNKEHVIQMVRLYRQRYEYYGHGKAHQAYVALGGQA
+YMAKNSQDAVKEFRPYFDNAPVYGHGPSLEQFSSMTPLTVGSPQQVIERTLGFRDWVGDY
+QRQMFLIDHAGLPTDTVLKQIDIFGEEVLPVLRKEFAALKPDDVPEAPTHEFLVERARRG
+EAPVPGGKEGSQAQIDRAAAAEKRAAAKAGEGA---
+>KBS0714_MOLHKGIG_00727
+MQFGVFTIGDITADPTNGTAPTEHQRIKDTVKIARHAEQAGFEVFATGQHHNPPFVAPGN
+PPTLLAYLAAQTETLQLSTATTLITTMDPVRLAEDYAYLQHLADGRVDLTMGRGNTGPVY
+PWFGKDIRQGIQLAVENYNLLYRLWHEETVDWSGNHRTPLQDFTLTPQPLDGVAPFVWHG
+SIRSPEIAEQAAYYGDGYFHNNIFWNKEHVIQMVRLYRQRYEYYGHGKAHQAYVALGGQA
+YMAKNSQDAVAEFRPYFDNAPVYGHGPSLEDFSRMTPLTVGSPQQVIERTLTFRDWVGDY
+QRQMFLIDHAGLPTDTVLRQIDLFGEEVLPVLRKEFDALKPDDVPAAPTHEFLVARARRG
+EAPVPGGKEGSQAQLDRAAAAEQRATADAAKGGAAQ
+>KD337_NAFOICDF_02103
+MQLGIFTIGDITADPTTGTTPTEHQRIKDTVTIARHAEQAGFDVFATGQHHNPPFVAPGN
+PPTLLSHLAAVTETMTLSTATTLITTMDPVRLAEDYSYLQHLADGRVDLTLGRGNTGPVY
+PWFGKDIRQGVNLAVENYNLLYRLWHEETVDWSGQFRTPLQDFTLTPQPLDGVAPFVWHG
+SIRSPEIAEQAAYYGDGFFHNNIFWNKEHIIRMVRLYRQRFEHYGHGKAHQAYVGLGGQA
+YMAKNSQDAVKEFRPYFDNAPVYGHGPSLEDFTSMTPLTVGSPQQVIERTLSFRDWVGDY
+QRQMFLIDHAGLPTDTVLKQIDLFGEEVLPVLREEFAALKPDDVPEAPTHEFLVERARRG
+EAPVPGGREGSPAHAAREAARAKQAEQQKKKEDA-R
+>SA211_MHAAABBN_00458
+MQFGVFTIGDITADPTNGTAPTEHQRIKDTVKIARHAEQAGFEVFATGQHHNPPFVAPGN
+PPTLLAYLAAQTETLQLSTATTLITTMDPVRLAEDYAYLQHLADGRVDLTMGRGNTGPVY
+PWFGKDIRQGIQLAVENYNLLYRLWHEETVDWSGNHRTPLQDFTLTPQPLDGVAPFVWHG
+SIRSPEIAEQAAYYGDGYFHNNIFWNKEHVIQMVRLYRQRYEYYGHGKAHQAYVALGGQA
+YMAKNSQDAVAEFRPYFDNAPVYGHGPSLEDFSRMTPLTVGSPQQVIERTLTFRDWVGDY
+QRQMFLIDHAGLPTDTVLRQIDLFGEEVLPVLRKEFDALKPDDVPAAPTHEFLVARARRG
+EAPVPGGKEGSQAQLDRAAAAEQRATADAAKGGAAQ
+>TT9_LFPAFLNI_00691
+MQFGVFTIGDITADPTNGTAPTEHQRIKDTVKIARHAEQAGFEVFATGQHHNPPFVAPGN
+PPTLLAYLAAQTETLQLSTATTLITTMDPVRLAEDYAYLQHLADGRVDLTMGRGNTGPVY
+PWFGKDIRQGIQLAVENYNLLYRLWHEETVDWSGNHRTPLQDFTLTPQPLDGVAPFVWHG
+SIRSPEIAEQAAYYGDGYFHNNIFWNKEHVIQMVRLYRQRYEYYGHGKAHQAYVALGGQA
+YMAKNSQDAVAEFRPYFDNAPVYGHGPSLEDFSRMTPLTVGSPQQVIERTLTFRDWVGDY
+QRQMFLIDHAGLPTDTVLRQIDLFGEEVLPVLRKEFDALKPDDVPAAPTHEFLVARARRG
+EAPVPGGKEGSQAQLDRAAAAEQRATADAAKGGAAQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001519.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001519.fa
new file mode 100644
index 0000000000000000000000000000000000000000..94d8720dccf39d65d5b85d0a6ede752a4f3e35dc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001519.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02233
+MNSSSTPTPEPS------------------------ETARHAWRAYFEATQMLSEMLERG
+LKKDSGMSLADYNLLLLLYEAPEGRLRMGELASGMVFSPSRITYQVKTLVARGLIERRAA
+ECDRRGFEAVLTDEGRTAFRRAAAGHARQVDELFLSHLEPGEAETLERIFTRLGGRLEGL
+C--------------------
+>KBS0714_MOLHKGIG_00725
+MSSSSTPAPEPAAQDAAPAEPDGGWFGSASEAHRPVDPPKRAWRAYFEATQMLTEVVERR
+LKQDCGMSLADYNLLLLLYESPEGRLRLGELASRMVFSPSRITYQVKTLVARGLIDRRPV
+ACDRRGFEAVLTDEGRSAFRRAAIEHARQVDELFLGDLAPGEAESLTRIFSRLGRRLEGL
+C--------------------
+>KD337_NAFOICDF_02105
+MTSSSTPAAEPTGP----------------------RAARHAWRAYFESTQMLQDQLERG
+LKAECGITLADYNLLLLLVESDGGRLRLGELASRMVFSPSRVTYQVKSLVARGLIERRRV
+ECDRRGFEAVLTDAGRTAFRRAAVVHARQVDELFLDLLQPGEAEVLGRVFTRVGTALESR
+CAGRAAPSEPCGAQASNSADA
+>SA211_MHAAABBN_00456
+MSSSSTPAPEPAAQDAAPAEPDGGWFGSASEAHRPVDPPKRAWRAYFEATQMLTEVVERR
+LKQDCGMSLADYNLLLLLYESPEGRLRLGELASRMVFSPSRITYQVKTLVARGLIDRRPV
+ACDRRGFEAVLTDEGRSAFRRAAIEHARQVDELFLGDLAPGEAESLTRIFSRLGRRLEGL
+C--------------------
+>TT9_LFPAFLNI_00689
+MSSSSTPAPEPAAQDAAPAEPDGGWFGSASEAHRPVDPPKRAWRAYFEATQMLTEVLERR
+LKQDCGMSLADYNLLLLLYESPEDRLRLGELASRMVFSPSRITYQVKTLVARGLIDRRPV
+ACDRRGFEAVLTDEGRSAFRRAAIEHARQVDELFLVDLAPGEAESLTRIFSRLGRRLEGL
+C--------------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001520.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001520.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a91eb8ee17a2af22b86f53b3597ca5e6c2194af0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001520.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02234
+MRTRTLTGVATAALGAVVVAGAGPALAQTVITQGSALSAPAGACSLTIVDDATAYTAAHC
+GAGQWEVGSPVLDAEGVQIGTVSGLPGTSGVDVVRVALAEDVEVVGEWSTRPAASVEVGE
+TVFTHGSSVPLGAPNSLSHTQTFDAATVCDDAYSDQMALDVASTYPGDSGGAVYDAQQRV
+VGVISGVAPVTFDEEGNVVGCDAQSLSSIMVPVESLDAVGQETAAPAAVEPAAAE-APAT
+EVTETPAIADVAGPVADEDLPTGGEPAVDESELTEFTPAEEEAIRAELIE-RAEAEAAAE
+APAEQP--AAEAPVAEAVVAGTEDVVAAPAEGVAYGTQVMAETSQGGFASVTVTAYDADG
+TVLGVDGLDLTGEYRAWMPVPAEVPAGGSVVVTVVDAAGDATDTQVTLGGQLIG
+>KBS0714_MOLHKGIG_00724
+MRTRTLTGVATAALGAVVVAGAGPALAQTTLTQGSAITAPAGACSLTIVDDATAYTAAHC
+GAGQWQIGSTVRDVDGTAIGTVSALPGDSGVDAVRVALADDVDVVGDWSTRPASSIGVGE
+TVYTHGSSVPLGAPNTVSHTQTFEAATVCDDAYADQVALDTASTYAGDSGGAVYDAQQRV
+VGVISGIAPVTFDAEGNVVGCDAQAMSSIMVPVESLDAL-DASAAPAAETAAAAETAPAA
+ET--APAIADVAGPVADEDLPTGGEPAVDESELTEFTPAEEEAIAAELKA-RAEAAAEEE
+AAEAAP--AAEAPVAEAAAPGVTDVVAAPAEGVAYGTQVVAQTDQGGFASVTVTAYDADG
+TVLGQDGLDLTGEYRAWLPVPAEVPAGGSVVVTVVDAAGAATDATVTLGGQLVG
+>KD337_NAFOICDF_02106
+MKKTTLTGATTAALGAVVVAGAGSALAATPLTQGAALSVPAGECSITLVSDTTAFTAAHC
+GAGQWTVGSAVHAADGARIGSVSALPGSTGVDVVKIALDEDVDVVGDWSTRPAASVKPGE
+TVYTQGSSVPLGSPNSISDPETYDIAETCGDVYTDQVSLDAATTRPGDSGGAVYDAKQRV
+VGVVSGLAPVSFDEEGRAVGCDAASLSTIMVPAESLKAV-AA--------------APAK
+AT--APA-------------PTVGKHGVI---LKAPTAPAAKAPAAEKKAPAAKAPAAEK
+KAAPAPTLGKHGVSAETATAGTTTLKVAPEDGIDFRTRVQATTKTGGFSYMAVTAYDAAG
+KQIGHLHLHSDGQPMTWINTPAQVPAGGHIEVQLKDAAGQPTDATVTLGGVPVN
+>SA211_MHAAABBN_00455
+MRTRTLTGVATAALGAVVVAGAGPALAQTTLTQGSAITAPAGACSLTIVDDATAYTAAHC
+GAGQWQIGSTVRDVDGTAIGTVSALPGDSGVDAVRVALADDVDVVGDWSTRPASSIGVGE
+TVYTHGSSVPLGAPNTVSHTQTFEAATVCDDAYADQVALDTASTYAGDSGGAVYDAQQRV
+VGVISGIAPVTFDAEGNVVGCDAQAMSSIMVPVESLDAL-DASAAPAAETAAAAETAPAA
+ET--APAIADVAGPVADEDLPTGGEPAVDESELTEFTPAEEEAIAAELKA-RAEAAAEEE
+AAEAAP--AAEAPVAEAAAPGVTDVVAAPAEGVAYGTQVVAQTDQGGFASVTVTAYDADG
+TVLGQDGLDLTGEYRAWLPVPAEVPAGGSVVVTVVDAAGAATDATVTLGGQLVG
+>TT9_LFPAFLNI_00688
+MRTRTLTGVATAALGAVVVAGAGPALAQTTLTQGSAITAPAGACSLTIVDDATAYTAAHC
+GAGQWQIGSTVRDVDGTAIGTVSALPGDSGVDAVRVALADDVDVVGDWSTRPASSIGVGE
+TVYTHGSSVPLGAPNTVSHTQTFEAATVCDDAYADQVALDTASTYAGDSGGAVYDAQQRV
+VGVISGIAPVTFDAEGNVVGCDAQAMSSIMVPVESLDAL-DASAAPAAETAAAAETAPAA
+ET--APAIADVAGPVADEDLPTGGEPAVDESELTEFTPAEEEAIAAELKA-RAEAAAEEE
+AAEAAP--AAEAPVAEAAAPGVTDVVAAPAEGVAYGTQVVAQTDQGGFASVTVTAYDADG
+TVLGQDGLDLTGEYRAWLPVPAEVPAGGSVVVTVVDAAGAATDATVTLGGQLVG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001522.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001522.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8df2294e061ede246ee92d13c0a6f77aa3d6e3e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001522.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02236
+MTPNPAAPALELLPAVDVQDGQAVRLVQGEAGSATSYGDPLTAALDWQRAGAEWIHLVDL
+DAAFGRGDNREVMRRVVEEIGVKIELSGGIRDDASLENALEMGAARVNLGTAALEDPAWT
+ARVIERFGDKVAVGLDVRGTTLAARGWTQEGGDLWEVLARLEDAGCSRYVVTDVTKDGTL
+KGPNTELLAQVCARTDKPVVASGGISSLEDVAALAAMTGQGVEGAIMGKALYAGRFSLEQ
+ALAVAGGATVEQARAEQPGPVAE
+>KBS0714_MOLHKGIG_00722
+MTPN--APALELLPAVDVQDGQAVRLVQGEAGSATSYGDPVTAALDWQRAGAEWIHLVDL
+DAAFGRGDNREVMRRVVEEIGVKIELSGGIRDDASLENALEMGAARVNLGTAALEDPDWT
+ARVIERFGDRVAVGLDVRGTTLAARGWTKEGGDLWEVLARLEDAGCARYVVTDVTKDGTL
+KGPNTELLAQVCAKTAKPVVASGGISSLEDVAALAAMTGQGVEGAIMGKALYAGRFSLEQ
+ALAVAGGATVEQARSEQPGPVAP
+>KD337_NAFOICDF_02108
+MTET--TPALELLPAVDVQDGQAVRLVQGEAGSATSYGDPLTAALDWQDAGAEWIHLVDL
+DAAFGRGDNRDVLRRVVDEIGVKIELSGGIRDDASLENALAMGAARVNLGTAALEDPAWT
+ARAIERFGNRVAVGLDVRGTTLAARGWTQDGGDLWEVLARLEEAGCARYVVTDVTKDGTL
+RGPNRELLARMCAATDKPVVASGGISSLEDIAALAAMVPQGVEGAIMGKALYAGRFSLEQ
+ALAVAAGATVERAREQHPFQAAP
+>SA211_MHAAABBN_00453
+MTPN--APALELLPAVDVQDGQAVRLVQGEAGSATSYGDPVTAALDWQRAGAEWIHLVDL
+DAAFGRGDNREVMRRVVEEIGVKIELSGGIRDDASLENALEMGAARVNLGTAALEDPDWT
+ARVIERFADRVAVGLDVRGTTLAARGWTKEGGDLWEVLARLEDAGCARYVVTDVTKDGTL
+KGPNTELLAQVCAKTAKPVVASGGISSLEDVAALAAMTGQGVEGAIMGKALYAGRFSLEQ
+ALAVAGGATVEQARSEQPGPVAP
+>TT9_LFPAFLNI_00686
+MTPN--APALELLPAVDVQDGQAVRLVQGEAGSATSYGDPVTAALDWQRAGAEWIHLVDL
+DAAFGRGDNREVMRRVVEEIGVKIELSGGIRDDASLENALEMGAARVNLGTAALEDPDWT
+ARVIERFADRVAVGLDVRGTTLAARGWTKEGGDLWEVLARLEDAGCARYVVTDVTKDGTL
+KGPNTELLAQVCAKTAKPVVASGGISSLEDVAALAAMTGQGVEGAIMGKALYAGRFSLEQ
+ALAVAGGATVEQARSEQPGPVAP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001523.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001523.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4cc89b696598337241ad84cdabe336146bdb1ce6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001523.fa
@@ -0,0 +1,11 @@
+>AS2_ACLBLIBL_02237
+MPYWSVLYLALGGLLLGAAWSMRTQKAPLWAIVIVLVLAGMAIAASFLTVAR
+>KBS0714_MOLHKGIG_00721
+MPYWSVLYLALGGLLLGAAWSMRTQKAPLWAIVIVLVLAGMAIAASFLTVGA
+>KD337_NAFOICDF_02109
+MPYWSVLYLGLGGILLGAAWSMRTQKAPTWAVVIALVLAAMAVAAAFLTV--
+>SA211_MHAAABBN_00452
+MPYWSVLYLALGGLLLGAAWSMRTQKAPLWAIVIVLVLAGMAIAASFLTVGA
+>TT9_LFPAFLNI_00685
+MPYWSVLYLALGGLLLGAAWSMRTQKAPLWAIVIVLVLAGMAIAASFLTVGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001524.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001524.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2ba4ed5b0ab785a6c44c1b21d13aa0c9e45b0f39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001524.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02238
+MARPTSVPGVRPSVAVLDYGSGNVHSAVRALERAGADVELTRDPEAVQSADGLLVPGVGA
+FASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERAEGMGEWPGVVEA
+LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLRWEFDQTISAMRPPQVTWAH
+HGADFVAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
+>KBS0714_MOLHKGIG_00720
+MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA
+YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE
+LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH
+HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
+>KD337_NAFOICDF_02110
+MASPTSVPGVRPTVAVLDYGSGNVHSAVRAVEHAGARVELTKDPDAVLGADGLVVPGVGA
+FASVMEALRSSGGTRWIGRRVAGGRPVLGICVGHQVLFEAGVEHGVRTEGMGEWPGVVEP
+LPAATVPHMGWNTVRPAEGSALFAGIEDERFYFVHSYAVQSWEFDQGNEAMRPPQVTWSH
+HGADFIAAVENGPLSATQFHPEKSGDAGQALLRNWLETL
+>SA211_MHAAABBN_00451
+MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA
+YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE
+LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH
+HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
+>TT9_LFPAFLNI_00684
+MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA
+YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE
+LPAEVLPHMGWNTVRPAEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH
+HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001529.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001529.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5dc4c712cb64ec66a94b497e92333d7cc08b1294
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001529.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_02243
+MSGAGTEGTTPAGEGAQPRTDHEREALRLLDAAVEATGGQQRAGQREMVLQVARALESRRHLLVQAGTGTGKSLAYLIPA
+LQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPREPVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADD
+GGLLGSAADGTGGPSSLLGKEVMYLRAWADQTETGDRDDLDVPVTDRAWRQVSVSAIDCLGASRCPMAEECFSERARADA
+ADADVVVTNHAMLAISAFEGLAVLPAYSAVVVDEAHELQDRVTGAVTGQLSGSIVHGAATSLRKHTTVAVEDLMEAGAGL
+DRAFTDAPSGLLAAGPDEVQEQALNAVLAAARQCLSDLGQDKDKEADADGGRQMARSRVLEVLEVVERMLAARPEADFPE
+VLWATRPGHFEPGVGWQPGDESDPPQLFVAPISVAGKLREGLFGKATTVLTSATLTVGAGERRFDSVAGDVGLAGPDAPR
+FEALDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASGGGALGLFSSRRAAEDAAAEMRRRLGPKATVLCQ
+GDATLSALVRQFAEEPDTSLFGTMSLWQGVDVPGNSLRLVAIDRIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAV
+RMAQGAGRLVRSVHDRGVVAVLDSRLATERYGGYITSALPDFWRTTDRAVVLGVLGRLAETGS
+>KBS0714_MOLHKGIG_00715
+MSG---GAEEVGAGGAQPRTEHEREALRLLDAAVQATGGQHRAGQREMVLQVARALESRRHLLVQAGTGTGKSLAYLIPA
+IQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPREPVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADD
+GGMIGSATDGAAGPSSLLGKEVMYLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQAEECFSERARADA
+ADADVVVTNHAMLAISAFEGLAVLPAYSAVVVDEAHELQDRVTGAVTGQLSGSIVHGAATSLRRHTTVAVEDLIEAGAAL
+DRAFTDTPSGLIAAGPDEVQEQALTGVLTAARQCLSDLGQDKDKEADADGGRQMARSRILEVLEVVERMLAARPEADFPE
+VLWATRPGHFEPGVGWQPGDETDPPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSVAGDVGLAGPDAPK
+FEALDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASRGGALGLFSSRRAAEDAAAEMRRRLGPKTTILCQ
+GDATLSALVRQFSEEPDTSLFGTMSLWQGVDVPGNSLRLVVIDRIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAV
+RMAQGAGRLVRSVTDRGVVAVLDPRLATERYGGYITSALPDFWRTTDRDVVRGVLARLAS-GD
+>KD337_NAFOICDF_02115
+M-----TDSTTGPAGAVPTTDREEEALRLLDVVVEATGGQQRAGQREMVLQVARALESRRHLLVQAGTGTGKSLAYLIPA
+LQHAMDQEDPVVVATATLALQAQIMKRDAPRLVQALAGELPREPVVALVKGRSNYLCRHKVDGGYPGDEGEETLFEVADD
+GGLIGSGEDGE--PSSPLGKEVMYLRAWADVTETGDRDDLEVPVTDRAWRQVSVNAVDCLGATRCPLAEECFSERARADA
+ADADVVVTNHAMLAISAFEGLAVLPAYSAVIVDEAHELQDRVTGAVTGQLSGSIVHGAATSLRRHTSVAVEDLAQAAAGL
+DRAFTDTPSGLIQGGPDDVQEQALTAVLSAARQCFSDLG--KDKEGEADAGRQMARSRLLEVVEVAERMLAAHPEADFPE
+VLWATRPGRFEPGSGWQPGDEADPPQLYVAPISVAGRLREGLFGKATTVLTSATLTVGQGERRFDSVAGDVGLAGPDAPR
+FTALDVGSPFDYPRQGVLYVARHLPKPGRTASPESLDELEALLRASNGGALGLFSSRRAAEDAAEHMRRRLGRGHTVLCQ
+GDATLSALVRQFADEPDTSLFGTMSLWQGVDVPGPSLRLVVIDRIPFPRPDDPLSQARTRDVARHGGNGFMRVSATHAAV
+RMAQGAGRLVRSVEDRGVVAVLDSRLATERYGGYITSALPDFWRTTDRAVVRGVLERLAREAH
+>SA211_MHAAABBN_00446
+MSE---EEQEAGAGGAQPRTEHEREALRLLDAAVQATGGQHRAGQREMVLQVARALESRRHLLVQAGTGTGKSLAYLIPA
+IQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPREPVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADD
+GGVIGSATDGAAGPSSLLGKEVMYLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQAEECFSERARADA
+ADADVVVTNHAMLAISAFEGLAVLPAYSAVIVDEAHELQDRVTGAVTGQLSGSIVHGAATSLRRHTTVAVEDLIEAGAAL
+DRAFTDTPSGLIAAGPDEVQEQALTGVLTAARQCLSDLGQDKDKEADADGGRQMARSRILEVLEVVERMLAARPEADFPE
+VLWATRPGHFEPGVGWQPGDETDPPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSVAGDVGLAGPDAPK
+FEALDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASRGGALGLFSSRRAAEDAAAEMRRRLGPKTTILCQ
+GDATLSALVRQFAEEPDTSLFGTMSLWQGVDVPGNSLRLVVIDRIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAV
+RMAQGAGRLVRSVTDRGVVAVLDPRLATERYGGYITSALPDFWRTTDRDVVRGVLARLAS-GD
+>TT9_LFPAFLNI_00679
+MSE---EEQEAGAGGAQPRTEHEREALRLLDAAVQATGGQHRAGQREMVLQVARALESRRHLLVQAGTGTGKSLAYLIPA
+IQHAMTQEDPVVVATATLALQAQIMKRDAPRLVEALKDELPREPVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADD
+GGVIGSATDGAAGPSSLLGKEVMYLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQAEECFSERARADA
+ADADVVVTNHAMLAISAFEGLAVLPAYSAVIVDEAHELQDRVTGAVTGQLSGSIVHGAATSLRRHTTVAVEDLIEAGAAL
+DRAFTDTPSGLIAAGPDEVQEQALTGVLTAARQCLSDLGQDKDKEADADGGRQMARSRILEVLEVVERMLAARPEADFPE
+VLWATRPGHFEPGVGWQPGDETDPPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSVAGDVGLAGPDAPK
+FEALDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLSASRGGALGLFSSRRAAEDAAAEMRRRLGPKTTILCQ
+GDATLSALVRQFAEEPDTSLFGTMSLWQGVDVPGNSLRLVVIDRIPFPRPDDPLSQARTRDVARNGGNGFMRISATHAAV
+RMAQGAGRLVRSVTDRGVVAVLDPRLATERYGGYITSALPDFWRTTDRDVVRGVLARLAS-GD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001536.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001536.fa
new file mode 100644
index 0000000000000000000000000000000000000000..50daa4dacf6737402d006f80b3829e95e0f42489
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001536.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02252
+MTRARRDAGGGAARRSERNGRSGAASGASAFDDARDTDAARMWLELAGVPEADAPAA---
+ARSVDEPPAAPTDGPDDPPLATAENGSSAAPSGPAAAPDEAGPPDLGSLLGRASDLPSPA
+PGAAARVLPWSA--DARPERGGRGARGTSSEAR-RARRRTARLAAADVASAPEAASTPEE
+ANAREDARPRRRPGPAPLPAEPREREEAAREVVLRQLALGPRSRGQLEAKLADREAEPEL
+IARVLDRFEEVRLVDDAAFAEVWVRSRHRSKGLARRAIGHELRQKGVDRDVAAEALEAID
+GEDERAAALELVRRRLRGRRVPAGNGPHARAERDKVTRRLVGMLGRKGYGGGLAFAVVKE
+VLGELEE-
+>KBS0714_MOLHKGIG_00705
+MTRSRRNVGGGAAHRSETTGRSGSASGASAFDDARDSDVGRMWLDLAGAPEPTSSDADAS
+DAARDAAPAR----------------DAGAPAEDVPDPAPGAAPDLGALLTRASDLPSPA
+PGAGPRSLPWSGREDTRADTERRGRRRAPAKRSGRTRPREDGRAPAEPAP--QT------
+------DRPRRRPGPAPLPTAPREREEAAREVVLRQLALGPRSRGQLERKLAERQAEPEL
+IERVLDRFEEVRLVDDAAFAEVWVRSRHRSKGLARRALGHELQQKGVDREIAAEALEAID
+GEDERAAALDLVRRRLRGRTVPGGASPEARAERDKVTRRLVGMLGRKGYGGGLAFAVVKE
+VLAEHEE-
+>KD337_NAFOICDF_02124
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------MPEDPREREEAARQVVLRQLAMGPRSRRQLERKLADREAEPEL
+VERVLDRFEEVSLVDDAAFAEVWVRSRARGKRLSRRAISRELHDKGVDRDVAEEALAAIE
+PEDERQAALELVRSKMRGRPAPAADGPEGRAERDKVTRRLVGMLGRKGYGPGLAFGVVKE
+VLAELDEA
+>SA211_MHAAABBN_00439
+MTRSRRNVGGGAAHRSETTGRSGSASGASAFDDARDSDVGRMWLDLAGAPEPTSSDA---
+DAARDAVPAR----------------DAGTPAGDGSDPAPGAAPDLGALLTRASDLPSPA
+PGAGPRALPWSGREDTRADTERRGRKRATTPPR-RGRPRDEGRPAVDPRPAVET------
+------DRPRRRPGPAPLPTAPREREEAAREVVLRQLALGPRSRGQLERKLAERQAEPEL
+IERVLDRFEEVRLVDDAAFAEVWVRSRHRSKGLARRALGHELQQKGVDREIAAEALEAID
+GEDERTAALDLVRRRLRGRTVPGGASPEARAERDKVTRRLVGMLGRKGYGGGLAFAVVKE
+VLAEHEE-
+>TT9_LFPAFLNI_00672
+MTRSRRNVGGGAAHRSETTGRSGSASGASAFDDARDSDVGRMWLDLAGAPEPTSSDA---
+DAARDAVPAR----------------DAGTPAGDVPDPAPGVAPDLGALLTRASDLPSPA
+PGAGPRTLPWSGREDTRADIERRGRKRATTPPR-RGRPRDEGRPAVDPRPAVET------
+------DRPRRRPGPAPLPTAPREREEAAREVVLRQLALGPRSRGQLERKLAERQAEPEL
+IERVLDRFEEVRLVDDAAFAEVWVRSRHRSKGLARRALGHELQQKGVDREIAAEALEAID
+GEDERAAALDLVRRRLRGRTVPGGASPEARAERDKVTRRLVGMLGRKGYGGGLAFAVVKE
+VLAEHEE-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001537.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001537.fa
new file mode 100644
index 0000000000000000000000000000000000000000..748fd55af02f8dd46c9013bbfc05b2040e57903e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001537.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02253
+MSK-------TPDREKALEAALAQIDKQFGKGSVMRLGDQTQTPVEVIPTGSVAMDVALG
+IGGLPRGRVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTD
+ALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMS
+QALRKITGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLK
+EAGNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFT
+YDGDQLGQGKENARRFLKDNPDLAQEIEERILTKLGIGVDPEAEAD---EAPALTAVPGD
+TAAG
+>KBS0714_MOLHKGIG_00704
+MSK-------VTDREKALEAALAQIDKQFGKGSVMRLGDQTQAPVEVIPTGSVAMDVALG
+IGGLPRGRVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARQLGVDTD
+ALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMS
+QALRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLK
+EAGNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFT
+YDGDQLGQGKENARRFLKDNPDLANEIEERILTKLGIGVAPEAEDD---EAPALTAVPGD
+TAAG
+>KD337_NAFOICDF_02125
+MSKASATEKVATEREKALEAALAQIDKQFGKGSVMRLGERSQAPVEVIPTGSVAMDVALG
+IGGLPRGRVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTD
+ALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMS
+QALRKVTGRLHQTNTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLK
+EAGSPVGNRTRVKIVKNKMAPPFKQAEFDILYGEGISKEGSLIDMGVEEGIVKKSGAWFT
+YDGDQLGQGKENARRFLKDNPDLADEIEHRIFTKLGIGADPQAEDDAEGETPALQAVAGD
+VAAG
+>SA211_MHAAABBN_00438
+MSK-------VTDREKALEAALAQIDKQFGKGSVMRLGDQTQAPVEVIPTGSVAMDVALG
+IGGLPRGRVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARQLGVDTD
+ALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMS
+QALRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLK
+EAGNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFT
+YDGDQLGQGKENARRFLKDNPDLANEIEERILTKLGIGVAPEAEDD---EAPALTAVPGD
+TAAG
+>TT9_LFPAFLNI_00671
+MSK-------VTDREKALEAALAQIDKQFGKGSVMRLGDQTQAPVEVIPTGSVAMDVALG
+IGGLPRGRVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARQLGVDTD
+ALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMS
+QALRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLK
+EAGNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFT
+YDGDQLGQGKENARRFLRDNPDLANEIEERILTKLGIGVAPEAEDD---EAPALTAVPGD
+TAAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001538.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001538.fa
new file mode 100644
index 0000000000000000000000000000000000000000..494aa34294b9d3836d4c58c484f532ce33729f75
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001538.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02254
+MRVSEFQRLMDEEFGPGRAGLVADSLHLPGLDTTATAALAAGVDPRRVWLAVCELHDIPE
+ERRLGRDVPPKR
+>KBS0714_MOLHKGIG_00700
+MRESEFRRLMDEEFGPARAGLVADSLHLPGLDTTATAALAAGVDPRRVWLAVCDLHEIPQ
+ERRLGRDVPPKR
+>KD337_NAFOICDF_02126
+M--TEFQRLMEDEFGPARAGLVADSLHLPGFDATASEALAAGADPKDVWRAVCDLHEIPA
+ERRLGRDVPPTR
+>SA211_MHAAABBN_00437
+MRESEFRRLMDEEFGPARAGLVADSLHLPGLDTTATAALAAGVDPRRVWLAVCDLHEIPQ
+ERRLGRDVPPKR
+>TT9_LFPAFLNI_00670
+MRESEFRRLMDEEFGPARAGLVADSLHLPGLDTTATAALAAGVDPRRVWLAVCDLHEIPQ
+ERRLGRDVPPKR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001539.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001539.fa
new file mode 100644
index 0000000000000000000000000000000000000000..139521bdcaced70ef96f5689e2459613dce14871
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001539.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02255
+MMRHPVQAHGITRWVDDQPRPRATTPDIKERSMPLLRHEIGDVLRDVRQLQGRTLREVSH
+DARVSLGYLSEVERGQKEASSELLASICQALEIPLSYLLREVSDRLVDQEGIQVPDTLPE
+DLTDAADPSLGTLAGR
+>KBS0714_MOLHKGIG_00699
+--------------------------------MPLLRHEIGDVLRDVRQLQGRTLREVSH
+DARVSLGYLSEVERGQKEASSELLASICQALDIPLSYLLREVSDRLVEQEGMVVPDTLPD
+DLT---DPSLGSLAGR
+>KD337_NAFOICDF_02127
+MMRHPVQAHGITRWVDSQPRPSQPTPELKERSMPILRHEIGDVLRDVRQRQGRTLREVSH
+DARVSLGYLSEVERGQKEASSELLASICDALQIPLSFLLREVSDRLAEQEGVVVPDTVPA
+DMAEDGAADVAPLAVR
+>SA211_MHAAABBN_00436
+--------------------------------MPLLRHEIGDVLRDVRQLQGRTLREVSH
+DARVSLGYLSEVERGQKEASSELLASICQALDIPLSYLLREVSDRLVEQEGMVVPDTLPD
+DLT---DPSLGSLAGR
+>TT9_LFPAFLNI_00669
+--------------------------------MPLLRHEIGDVLRDVRQLQGRTLREVSH
+DARVSLGYLSEVERGQKEASSELLASICQALDIPLSYLLREVSDRLVEQEGMVVPDTLPD
+DLT---DPSLGSLAGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001541.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001541.fa
new file mode 100644
index 0000000000000000000000000000000000000000..20594a14dd710c48884c78efb8cbd7cc208e1a70
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001541.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02258
+MSTGGEAERVSAWNLPNILTSVRILMVPLFAWALWAGGPWGGDSATARWIAVALFAAAMY
+TDKLDGDIARARGLITDFGKIADPIADKLLTGAALVLFSLLGELWWWVTVVILVREWGIT
+LMRFVVIRYGVMPAGRGGKLKTVLQAVGIGLLLMPLAPVVGGWWPWVGWTVIGAATVLTV
+LTGLEYVKDAWILRRDALAAPRGA--
+>KBS0714_MOLHKGIG_00696
+MSAAGGAQHVSAWNLPNILTSVRILMVPFFAWALWAGGPWGGDSLVARWVALALFAAAMY
+TDKLDGDIARARGLITDFGKIADPIADKLLTGTALVLFSLLGELWWWVTIVILVREWGIT
+LMRFVVIRYGVMPAGRGGKLKTVLQTVGIGLLLLPLAPVVGGWWPWAGWVVIGAATVLTV
+LTGLEYVKDAWVLRRDALAAQRGA--
+>KD337_NAFOICDF_02129
+M--NAQPERVSAWNLPNILTTVRILMVPFFVWAVWAGGPWGQDSLTARWIAVALFAAAMY
+TDKLDGDIARSRGLITDFGKIADPIADKLLTGSALVLFALLGELWWWVVIVILVREWGIT
+AMRFVVIRYGVMPAGRGGKLKTVLQAVGIGLLLMPLAPVLGGWWPWLGWTVIGAALALTV
+VTGVEYVRDAVRLRADWLASHPEARR
+>SA211_MHAAABBN_00433
+MSTAGGAQHVSAWNLPNILTSVRILMVPFFAWALWAGGPWGGDSLVARWVALALFAAAMY
+TDKLDGDIARARGLITDFGKIADPIADKLLTGTALVLFSLLGELWWWVTIVILVREWGIT
+LMRFVVIRYGVMPAGRGGKLKTVLQTVGIGLLLLPLAPLVGGWWPWAGWVVIGAATVLTV
+LTGLEYVKDAWVLRRDALAAQRGA--
+>TT9_LFPAFLNI_00666
+MSTAGGAQHVSAWNLPNILTSVRILMVPFFAWALWAGGPWSGDSLLARWVALALFAAAMY
+TDKLDGDIARARGLITDFGKIADPIADKLLTGTALVLFSLLGELWWWVTIVILVREWGIT
+LMRFVMIRYGVMPAGRGGKLKTVLQTVGIGLLLLPLAPLVGGWWPWAGWVVIGAATVLTV
+LTGLEYVKDAWVLRRDALAAQRAA--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001544.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001544.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fb27c0b68669fd048d6af4b7456ccd48167fb76d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001544.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02261
+MSAVRSASAPSELLFGTVVPAMVTPMTDEGAVDLEAAAALAEHLVDGGADGLVVTGTTGE
+TSTLTDEENLAMFRTVVEAVGDRAKVVAGTGTNDTAHTLELSRRAKETGVDGLLLVTPYY
+NKPNQAGIRAHFEAVADGVDLPIMLYDIPGRSVMPIEPETLIALAQHPNIRALKDAKGDL
+QSTTTVLAHSDLDLYSGDDGATLPLMALGAVGVVSVAAHVAPGLYRKLVDAVHAGDLAAA
+REHHFALDPVQRGIMTHVQGAVAAKAVLAAQGVIPSAAVRLPLVQASADELSDIRADLAE
+AGITF
+>KBS0714_MOLHKGIG_00693
+MSAVRSAVIPSELLFGTVVPAMVTPMTDEGAVDLEAAAALAEHLVDRGADGLVVTGTTGE
+TSTLTDDENVAMFRTVVEAVGDRARVVAGTGTNDTAHTLELSRRAAETGVDGLLLVTPYY
+NKPNQAGIRAHFETVADGVDLPIMLYDIPGRSVMPIEPETLIALAQHPNIRALKDAKGDL
+QSTTTVLAHTDLDLYSGDDGATLPLMALGAVGVVSVAAHAAPELYRQLVDAVHAGDLAGA
+RDHHFALDPVQRGIMTHVQGAVAAKAVLAAQGVIPSAAVRLPLVQATRDELSVIRADLAE
+AGITF
+>KD337_NAFOICDF_02131
+MTDARRTVNPSELPFGTVVPAMVTPMDQDGAVDLQAAAVLATHLVDQGADALVITGTTGE
+TSTLTDEENLAMFRTVVEAVGERARVIAGTGTNDTHHSLELSRRAAEIGVHGLLLVTPYY
+NKPNQAGIRRHFETIADGVDLPIMLYDIPGRSVMPIQPETLVALAAHPNITALKDAKGDL
+QSTTTVLAHTDLHVYSGDDGATLPLMAMGAVGVVSVAAHVAVPGYRALVDAVHAGDLRAA
+RDAHFALDPVQRGIMSHVQGAVAAKTVLAGQGIIPTAAVRLPLVAADDAELAAIRADLAE
+AGISF
+>SA211_MHAAABBN_00430
+MSAVRSAVIPSELLFGTVVPAMVTPMTDEGAVDLEAAAALAEHLVDRGADGLVVTGTTGE
+TSTLTDDENVAMFRTVVEAVGDRARVVAGTGTNDTAHTLELSRRAAETGVDGLLLVTPYY
+NKPNQAGIRAHFETVADGVDLPIMLYDIPGRSVMPIEPETLIALAQHPNIRALKDAKGDL
+QSTTTVLAHTDLDLYSGDDGATLPLMALGAVGVVSVAAHAAPELYRQLVDAVHAGDLAGS
+RDHHFALDPVQRGIMTHVQGAVAAKAVLAAQGVIPSAAVRLPLVQATPDELSVIRADLAE
+AGITF
+>TT9_LFPAFLNI_00663
+MSAVRSAVIPSELLFGTVVPAMVTPMTDEGAVDLEAAAVLAEHLVDRGADGLVVTGTTGE
+TSTLTDDENVAMFRTVVEAVGDRARVVAGTGTNDTAHTLELSRRAAETGVDGLLLVTPYY
+NKPNQAGIRAHFEAVADGVDLPIMLYDIPGRSVMPIEPETIIALAQHPNIRALKDAKGDL
+QSTTTVLAHTDLDLYSGDDGATLPLMALGAVGVVSVAAHAAPELYRQLVDAVHAGDLAGA
+RDHHFALDPVQRGIMTHVQGAVAAKAVLAAQGVIPSAAVRLPLVQATPDELSVIRADLAE
+AGITF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001547.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001547.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ceb90ede15ac147f68f7f5c0006a972a435a7beb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001547.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02266
+MAGMSIHREIPLDFTGVLADEGHGSVVRRSVLPGGVRVLTEAMPDQRSVTIGYWVAVGSR
+DESPEGYGSTHFLEHLLFKGTPTRTAMDIAAAFDRVGGESNAGTAKESTVYHARVLDEDL
+PMAVEVLTDMLTSSLLDPDELETERGVILEELAMDADDPVDVAHEKLAEVMLDGHPLGRP
+IGGTPETIRAVTREHVAGHYARWYRPDELVVTAAGNLDHDEVCRLVLAALQASGWELAPG
+ALPAPRRAVDTEGAAASRVLTGTHTVAKAVEQANVLVGGRSLSTTDPDRFALGVMQSVLG
+GGMSSRLFQEVRERRGLAYSTYSFSAGYSDAGYWGLYAGCQPDRVDEVSALMEAELDRMA
+AEVVTEEELARAHGQICGGTVLGMESTGARMSRLGRAELVTGEYVDLAASLERVRAVDAA
+QVRAVAARLAAGERARVVVAPA
+>KBS0714_MOLHKGIG_00689
+---MSVHREIPLDFDGVLADEGNGSVVRRSVLPGGVRVLTEAMPDQRSVTIGYWVAVGSR
+DESPEGYGATHFLEHLLFKGTPTRTAMDIAAAFDRVGGESNAGTAKESTVYHARVLDEDL
+PMAVEVLTDMLTSSLIDPDELETERGVILEELAMDADDPVDVAHEKLAEVMLDGHPLGRP
+IGGTPETIRAVTRDHVVGHYTHWYRPDELVVTAAGHLDHDEVCRLVLAALRASGWELTQG
+ALPAPRRAVDTAGAAASRVRTGTHTVTKAVEQANVLVGGRSLSTTDPDRFALGVMQSVLG
+GGMSSRLFQEIRERRGLAYNTYSFSAGYSDAGYWGLYAGCQPDRVDEVAALMEAELDRMA
+EADVTGEELARAHGQICGGTVLGMESTGARMSRLGRAELVTGEYVDLAASLARVREVDAG
+QVRAVAARLAAGDRARVVVAPA
+>KD337_NAFOICDF_02135
+MAGMTVQREIPLDFSGVLA-EDRGAVVCRSVLPGGVRVLTESMPDQRSVTVGYWVAVGSR
+DESPEGYGSTHFLEHLLFKGTPTRTAMDIASAFDRVGGESNAGTAKESTVYHAHVLDEDL
+PMAVEVLTDMVTSSLIDADELETERGVILEELAMDADDPVDVAHERLAAVLMDGHPLGRP
+IGGTPETIRAVTREHVVAHYRHWYRPQELVITAAGNLDHDDVCRLVLDALERSGWDLAEG
+AAPAPRRTADAAGAGA--VLAGTHTVAKQVEQANVIVGGQSLSTTDPDRFALGVMMSVLG
+GGMSSRLFQEIRERRGLAYSTYSFSAGYSDGGYFGLYAGCQPERVDEVAALMEAELERMA
+AAEVTAEELDRAHGQICGGTVLGMESTGARMSRLGRAELVTGEFVDLSASLARVRAVDAG
+RVRAVAARLAAGERARVVVAPA
+>SA211_MHAAABBN_00426
+---MSVHREIPLDFDGVLADEGNGSVVRRSVLPGGVRVLTEAMPDQRSVTIGYWVAVGSR
+DESPEGYGATHFLEHLLFKGTPTRTAMDIAAAFDRVGGESNAGTAKESTVYHARVLDEDL
+PMAVEVLTDMLTSSLIDPDELETERGVILEELAMDADDPVDVAHEKLAEVMLDGHPLGRP
+IGGTPETIRAVTRDHVVGHYTHWYRPDELVVTAAGHLDHDEVCRLVLAALRASGWELTQG
+ALPAPRRAVDTAGAAASRVRTGTHTVTKAVEQANVLVGGRSLSTTDPDRFALGVMQSVLG
+GGMSSRLFQEIRERRGLAYNTYSFSAGYSDAGYWGLYAGCQPDRVDEVAALMEAELDRMA
+EADVTGEELARAHGQICGGTVLGMESTGARMSRLGRAELVTGEYVDLAASLARVREVDAG
+QVRAVAARLAAGDRARVVVAPA
+>TT9_LFPAFLNI_00659
+---MSVHREIPLDFDGVLADEGNGSVVRRSVLPGGVRVLTEAMPDQRSVTIGYWVAVGSR
+DESPEGYGATHFLEHLLFKGTPTRTAMDIAAAFDRVGGESNAGTAKESTVYHARVLDEDL
+PMAVEVLTDMLTSSLIDPDELETERGVILEELAMDADDPVDVAHEKLAEVMLDGHPLGRP
+IGGTPETIRAVTRDHVVGHYTHWYRPDELVVTAAGHLDHDEVCRLVLAALRASGWELTPG
+ALPAPRRAVDTAGAAASRVRTGTHTVTKAVEQANVLVGGRSLSTTDPDRFALGVMQSVLG
+GGMSSRLFQEIRERRGLAYNTYSFSAGYSDAGYWGLYAGCQPDRVDEVAALMEAELDRMA
+EADVTGEELARAHGQICGGTVLGMESTGARMSRLGRAELVTGEYVDLAASLARVREVDAG
+QVRAVAARLAAGDRARVVVAPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001548.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001548.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a5d5713918320b6ec5a38d750e19ad71cb21ca70
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001548.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_02269
+MEGPEITFAEAVIDNGAYGKRTIRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYAAGR
+IPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTVAINAASVSTQLSGLPFSGPIGGV
+RMALVDDGAGKRQWVAFPKHSQLQDAVFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGASAPTEEVVAEGLEAAKP
+FIRALCEAQADLVKRAGKDPVDVPVFKDYEDDAFEAVEKLATDRLTEIFSIGDKQTRESASDAYHVEVMDELAGEDKPFA
+ERRGEIAKAYGSVTKQVVRQRILKDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDS
+LAPETSKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERAMVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAST
+LSLLNAGVPLRAPVAGIAMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLAAAL
+TQAREARLHILSVLNAAIDAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQDDTGADITIEDDGTVLIGATDGAS
+AEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAFVSLTPGKDGLLHVSELRKLNEGKRVDDVEDVLGVGQKVQVEITK
+IDDRGKLSLSPVVAESDADA-ETADAIESSQTEA
+>KBS0714_MOLHKGIG_00688
+MEGPEITFAEAVIDNGSYGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYAAGR
+IPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTVAINAASLSTQLSGLPFSGPIGGV
+RMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKP
+FIRALCEAQADLVKRAGKDPVDVPVFQDYQDDAYAAVEKLATDRLTEIFSIGDKQERESASDAYLLEVLEELAGEGKDFA
+ERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDS
+LAPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAST
+LSLLNAGVPLRAPVAGIAMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLAAAL
+TQAREARLHILSVLNAAIDAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQDDTGADITIEDDGTVLIGATDGAS
+AEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGGFVSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITK
+IDDRGKLSLSPVVAESDALA-ETADAIESSQIEA
+>KD337_NAFOICDF_02136
+MEGPEITFAEAVIDNGRHGTRTVRFETGRLAQQAAGSAMVYIDEETSMLSATTVGKHPREGFDFFPLTVDVEERMYAAGR
+IPGSFFRREGRPSTDAILTCRLIDRPLRPAFTKGIRNEVQVVVTVTSIAPDEIYDTVAINAASLSTQLSGLPFSGPIGGV
+RMALLDDGSGQRQWVAFPKHSQLEDAVFNMAVAGRVAGDDVAIMMVEAEAGENAWTLVKERGAQAPTEEIVAEGLEAAKP
+FIRALCEAQADLAARAGKAPVEVPVFKDYEQDAYDAVEKIATDRLTEIFSIADKQEREAASDAYHLEVIEELAGEGKDFA
+ERKGEVAKAYGSLTKQIVRRRILKDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDS
+LAPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAST
+LSLLNAGVPLRAHVAGIAMGLVSAEVEGQTQYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAGAL
+TQAREARLHILSVLEAAIDQPDELAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQDDTGADITIEDDGTVLIGATDGAS
+AEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAFVSLTPGKDGLLHISELRKLNEGKRVEDVEDVLGVGQKVQVEITK
+IDDRGKLSLAPVVADEDAAAGESREEDE----EA
+>SA211_MHAAABBN_00425
+MEGPEITFAEAVIDNGSYGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYAAGR
+IPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTVAINAASLSTQLSGLPFSGPIGGV
+RMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKP
+FIRALCEAQADLVKRAGKDPVDVPVFQDYQDDAYAAVEKLATDRLTEIFSIGDKQERESASDAYLLEVLEELAGEGKDFA
+ERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDS
+LAPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAST
+LSLLNAGVPLRAPVAGIAMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLAAAL
+TQAREARLHILSVLNAAIDAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQDDTGADITIEDDGTVLIGATDGGS
+AEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGGFVSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITK
+IDDRGKLSLSPVVAESDALA-ETADAIESSQIEA
+>TT9_LFPAFLNI_00658
+MEGPEITFAEAVIDNGSYGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYAAGR
+IPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTVAINAASLSTQLSGLPFSGPIGGV
+RMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKP
+FIRALCEAQADLVKRAGKDPVDVPVFQDYQDDAYAAVEKLATDRLTEIFSIGDKQERESASDAYLLEVLEELAGEGKDFA
+ERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDS
+LAPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAST
+LSLLNAGVPLRAPVAGIAMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLAAAL
+TQAREARLHILSVLNAAIDAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQDDTGADITIEDDGTVLIGATDGAS
+AEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGGFVSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITK
+IDDRGKLSLSPVVAESDALA-ETADAIESSQIEA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001552.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001552.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a5bc39ab95ce3f5ba667dff434a6959401f030d1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001552.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02279
+MLVWNSLDEVPTDLPRTVVTLGNFDGVHRGHREVLRRVVELARERDALAVAVTFSPHPRS
+VHRPDEPHVDILGPQQRAVLLSETGLDALLMQRYTLEFADQSPEEFVLSMFVRGLNAAVV
+VVGHDVRFGRGNVGDFAEMVRLGALHGFEVEAVEEHPAEIGDEPERRCSSTWVREALAAG
+DVAQAAAILGRHHTLDGEVVHGFARGRELGFPTANLAPEAEGMIPADGVYAGWVHDVQGE
+AWPAAISIGSNPTFEGVSRVVEAHVIDRPEERVEDFDLYGQHIEVEFVQRLRGMVAYEGV
+EKLVAQMTQDVEQARAILAATPSDR---
+>KBS0714_MOLHKGIG_00684
+MRVWNSLDEVPTDLPRTVVTLGNFDGVHRGHREVLRRVVELARARDALAVAVTFTPHPRA
+VHHPEVPHVDIISPEQRVVLLDEAGLDAVLLQRYTLEFADQSPEEFVRGMLVHGLHAAVV
+VVGHDVRFGRGNTGDVAEMVRLGARYGFEVEAVEEFPAEHGAEPERRCSSTWVREALAAG
+DVAQAAAVLGRHHVLAGEVVHGFARGRELGFPTANLETDVQGMIPADGVYAGWVHDAHGG
+VWPAAISIGSNPTFEDVSRVVEAHVIDRHDERVEDFDLYGQHIEVEFVARLRGMVAYEGV
+EKLVAQITQDVDEARAILATTPSDR---
+>KD337_NAFOICDF_02140
+MLVWNSMAEVPTDLPRTVVALGNFDGVHRGHRAVLERVVEIAHERGQLAVAVTFTPHPRV
+VHQPGLEHVEILSPEQRAVRLDETGIDALFLQHYTLEFAAQTPEEFVTSMFVRGLNAAAV
+VVGRDVRFGRDNAGDFAEMVRLGGVHGFDVVAVEDLPAEDG-DGERRCSSTWIRELLAAG
+DVAHAAEVLGRNHVVAGAVVHGFARGRELGFPTANLEADAAGMIPADGVYAGWVHDAHGS
+VWPAAVSIGSNPTFEGVSRVVEAHVIDRPEEPVEDFDLYGQQIEVEFVERLRGMVAYEGV
+EKLVAQMHQDVDQARAVLAAAPQPAGRV
+>SA211_MHAAABBN_00421
+MRVWNSLDEVPTDLPRTVVTLGNFDGVHRGHREVLRRVVELARARDALAVAVTFTPHPRA
+VHHPEVPHVDIISPEQRVVLLDEAGLDAVLLQRYTLEFADQSPEEFVRGMLVHGLHAAVV
+VVGHDVRFGRGNTGDVAEMVRLGARYGFEVEAVEEFPAEHGAEPERRCSSTWVREALAAG
+DVAQAAAVLGRHHVLAGEVVHGFARGRELGFPTANLETDVQGMIPADGVYAGWVHDAHGG
+VWPAAISIGSNPTFEDVSRVVEAHVIDRHDERVEDFDLYGQHIEVEFVARLRGMVAYEGV
+EKLVAQITQDVDEARAILATTPSDR---
+>TT9_LFPAFLNI_00654
+MRVWNSLDEVPTDLPRTVVTLGNFDGVHRGHREVLRRVVELARARDALAVAVTFTPHPRA
+VHQPEVPHVDIISPEQRVVLLEEAGLDAVLLQRYTLEFADQSPEEFVRGMLVHGLHAAVV
+VVGHDVRFGRGNTGDVAEMVRLGARYGFEVEAVEEFPAEHGAEPERRCSSTWVREALAAG
+DVAQAAAVLGRHHVLAGEVVHGFARGRELGFPTANLETDVQGMIPADGVYAGWVHDAHGG
+VWPAAISIGSNPTFEDVSRVVEAHVIDRHDERVEDFDLYGQHIEVEFVARLRGMVAYEGV
+EKLVAQITQDVDEARAILATTPSDR---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001553.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001553.fa
new file mode 100644
index 0000000000000000000000000000000000000000..389c6c787894a81d441c25af1d826e5dffea8a60
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001553.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02280
+MARTRTASGAARPGAAAPA---RNQGLGRIIVMVYAVFALSATARSLFQILTDVEAAPVA
+YSLSAFAATVYIVATLALARSGARAWAVALGAVLVELIGVVGVGLWTVLDPGLFAEETVW
+SRFGAGYGYVPLVLPVVGLAWLLAHRPSRPTAEEMAR
+>KBS0714_MOLHKGIG_00683
+MA----------PSDGAPA---RNQGLGRIIVMVYAVFALSASARSLFQILTQFDAAPVA
+YTLSAVAAVVYIVATFALARSGARAWAVALGAVLVELAGVVGVGLWTVLDPGMFAHDTVW
+SRFGAGYGYVPLVLPVVGLIWLLTHRPARPAEAG-AL
+>KD337_NAFOICDF_02141
+MVEQHP---VA--DDGAPARPRRNQGLGRIIVMVYAVFALSASARSLFQILDHFWVAPFA
+YVLSAFAAVVYIVATLALARSGPTAWKVAVAAVGVELAGVVGVGLLTVLDPQLFADATVW
+SRFGAGYGYVPLVLPMVGLAWLLSHRPSREGRV---R
+>SA211_MHAAABBN_00420
+MA----------PSDGAPA---RNQGLGRIIVMVYAVFALSASARSLFQILTQFDAAPVA
+YTLSAVAAVVYIVATFALARSGARAWAVALGAVLVELAGVVGVGLWTVLDPGMFAHDTVW
+SRFGAGYGYVPLVLPVVGLIWLLTHRPARPAEAG-AL
+>TT9_LFPAFLNI_00653
+MA----------PSDGAPA---RNQGLGRIIVMVYAVFALSASARSLFQILTQFDAAPVA
+YTLSAVAAVVYIVATFALARSGARAWAVALGAVLVELAGVVGVGLWTVLDPGMFAHDTVW
+SRFGAGYGYVPLVLPVVGLIWLLTHRPARPAEAG-AL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001554.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001554.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dff3afed526f3ea504a46822a1c20776bc16ef30
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001554.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02281
+MILDAWFWAGLVIGAVSLAVCVAMTAIRRHPADSSILSVAAVELFLLVYAVAAAVRQLGG
+EGLNGPGWEFWGYVVTALLVPVIAVAWAVTDKTRWSNLVLAVVGPTVVVMLHRMQVIWFG
+QW
+>KBS0714_MOLHKGIG_00682
+MILDAWFWTGLVIGAVSFVVCVVMTAIRRHPADASILSVAAVELFTLVYAAAAAVRQLGG
+DTLNGPGWEFWGYILTALIVPVIAVGWAVTDKTRWSNLVLAVVGPTIAVMLHRMQVIWFG
+QW
+>KD337_NAFOICDF_02142
+MILDAWFWTGAVVGGLSFVVCLAMTALRRHPADSSIVSVAAVELFLLVYGVVGAFRQLGG
+QPLNGPTWEFWGYVLTALLVPVIAVAWAVTDKTRWSNLVMAVAGPTVVVMLHRMQVIWFG
+QW
+>SA211_MHAAABBN_00419
+MILDAWFWTGLVIGAVSFVVCVVMTAIRRHPADASILSVAAVELFTLVYAAAAAVRQLGG
+DTLNGPGWEFWGYILTALIVPVIAVGWAVTDKTRWSNLVLAVVGPTIAVMLHRMQVIWFG
+QW
+>TT9_LFPAFLNI_00652
+MILDAWFWTGLVIGAVSFVVCVVMTAIRRHPADASILSVAAVELFTLVYAAAAAVRQLGG
+DTLNGPGWEFWGYILTALIVPVIAVGWAVTDKTRWSNLVLAVVGPTIAVMLHRMQVIWFG
+QW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001555.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001555.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5305a7a8aca1c80f41f8c0de7c3da0bd917ffb4f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001555.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02282
+-----------------------MDKPQGWTSHDVVGRLRRLAGTRKVGHAGTLDPMATG
+LLVVGVNKATRLLTAITGTDKTYTATIRLGQSTVTDDAEGDVVQTRLANAVTPERVAEQV
+AALTGPILQAPSAVSAIKVAGRRAYDRVRAGEDVALQARPVTVHEFTVHEMRRLDGGRLV
+DLDVTVRCSSGTYVRALARDLGEALETGGHLTALRRTAVGPFDVADALTLEELAEGFVMT
+GLSEAAAGLFPVRELTEDEARELAFGRAVAPTG-----------SGEALVAGRAPDGRVV
+ALISDVRRRGADVAKPQLVFAPAEGPGQGGTA
+>KBS0714_MOLHKGIG_00681
+-----------------------MDKPQGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATG
+LLVVGVNKATRLLTAITGTDKTYTATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQV
+AALTGEILQAPSAVSAVKVAGRRAYDRVRAGEDVTLDARPVTVHEFTVHELRRLDGGRLV
+DLDVTVRCSSGTYIRALARDLGEALETGGHLTALRRTAVGPFDVADALSLEALAERFAMT
+ELSEAAAGLFPVRELTEHEAHELAFGRVVAPTG-----------TGETLVAGRAPDGRVI
+ALVSDVRRRGADVAKPQLVFAPAEGPGQGRTA
+>KD337_NAFOICDF_02143
+MNARTAHAPTPDAPGTEASGVVLVDKPAGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATG
+LLVVGVNKATRLLTAITGTDKEYTATIRLGQSTTTDDAEGEVVQTRLANAVTPERVAEQV
+AALTGDILQVPSSVSAVKVAGRRAYDRVRAGEDVQLDARPVTVHAFEVEDFRRLDGGRTV
+DLDVTVRCSSGTYVRALARDLGEALDTGGHLTALRRTAVGPFRVEDAVDLDALAERFVMT
+ELSAAAAGLFPVRELTAHEAAELSFGRAIDPSGELAAAAGASGKAADGLVAGRTPDGTVV
+ALLQDGRRSGRDVARPHLVFAPAEGQGKEEAR
+>SA211_MHAAABBN_00418
+-----------------------MDKPQGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATG
+LLVVGVNKATRLLTAITGADKTYTATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQV
+AALTGEILQAPSAVSAVKVAGRRAYDRVRAGEDVTLDARPVTVHEFTVHELRRLDGGRLV
+DLDVTVRCSSGTYIRALARDLGEALETGGHLTALRRTAVGPFDVADALSLEALAERFAMT
+ELSEAAAGLFPVRELTEHEAHELAFGRVVAPTG-----------TGETLVAGRAPDGRVI
+ALVSDVRRRGADVAKPQLVFAPAEGPGQGRTA
+>TT9_LFPAFLNI_00651
+-----------------------MDKPQGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATG
+LLVVGVNKATRLLTAITGTDKTYTATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQV
+AALTGEILQAPSAVSAVKVAGRRAYDRVRAGEDVTLDARPVTVHEFTVHELRRLDGGRLV
+DLDVTVRCSSGTYIRALARDLGEALETGGHLTALRRTAVGPFDVADALSLEALAERFAMT
+ELSKAAAGLFPVRELTEHEAHELAFGRVVAPTG-----------TGETLVAGRAPDGRVI
+ALVSDVRRRGADVAKPQLVFAPAEGPGQGRTA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001564.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001564.fa
new file mode 100644
index 0000000000000000000000000000000000000000..975d72c983c421396be7fa6c39e9d68379323150
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001564.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02291
+MSAVEVLWYVLGVVAVALGLAVSIALHEVGHLMPAKLFGVRVTQYMIGFGPTIASWRRGE
+TEYGFKAVPLGGYVAMVGMLPPPRPGQEPRTASTGFVQQLGRMADDARTQAAAELTAADE
+GRQFIQLPVWKRVVIMLGGPFMNLLIALGVTALLVTTVGTSQPSTTAAEVYRCVVTTDEQ
+QARAAEGG-GQDCRPGDPVAPAHEAGLRPGDTVTSFDGRPVDDWDALSGLIRERAGQPTA
+IEWERDGEPHSATITPRLTQRPVTDAVGRPERAPDGTALTEEVGFIGMGSQIETVQQSPL
+AAGPVVAQQVRGVVDVVLVLPQRLWDTAVAVVTPAERDPDGPMSVVGVGRIAGEAAALQE
+AELADKAALLLSLVAGVNVALMVFNLIPLLPLDGGHVAGALWEALRRGWARLRGRPDPGP
+FDLARMLPLTYAVAGLMLVMGVVLIVADIVEPIRLF
+>KBS0714_MOLHKGIG_00671
+MTVVEILWYVAGVLAVALGLAVSIALHEIGHLVPAKLFGVRVTQYMIGFGPTLVSWRRGE
+TEYGFKAVPLGGYVAMIGMLPPPRPGQTPRAASTGFVQQLGRMADDARAQAAEEVRPGDE
+HRRFLALPVWKRVVIMLGGPFMNLLIALGATALLVTTVGTSQPSTTVAEVYRCVVTMQEQ
+QARAASGG-TEDCRPGDPAAPAHEAGLRPGDTVLAFDGRPVSDWDALSAAIRDRAGQPTR
+IEWERDGERMSATLTPRLTERPVTDALGRPERAPDGTVATHEVGFIGMGAQLETVRGTPL
+DAGPLVAQQVRGVVDVVLVLPQRLWDTAVAVVTPAERDPDGPMSVVGVGRIAGEAAALEE
+ATLTDKAALLLSLLAGVNVALMVFNLIPLLPLDGGHVAGALWEAVRRGWARITGRPDPGP
+FDLARMLPLTYAVGAAMLLMGVILIVADIVEPVRLF
+>KD337_NAFOICDF_02153
+MSAVEALWFVGGVVVVALGLALSIALHEVGHLVPAKLFGVRVTQYMVGFGPTVASWRRGE
+TEYGIKAFPLGGYVAMVGMLPPPKGGTVARTGSTGFRARAGRMADDARAQAAEEITAADE
+GRQFIQLPVWKRVVIMLGGPFVNLLIALALTAVLVSTLGVARPSTTADEVFQCVVSQSEQ
+QSRAADGGAAQDCRPGDPAAPAYEAGLRPGDRVVSFDGRDVGSWAELSTAIRARAGQATA
+IAWERDGTRTESTLTPLLTERPVTDALGVPERGADGGVKTEPVGFIGLASRQETVTLAPW
+EAVPLVGRQAQGVVGVILALPQRLWDTAVAVVTPAPRDPNGPMSVVGVGRIAGEAAALDT
+ASPADKAALLLSLVAGVNVALLVFNLIPLLPLDGGHVAGALWEGLRRGWARLRGRPDPGP
+FDLAVMMPLTYVVGAAMLAMGVLLIVADIVKPVQLF
+>SA211_MHAAABBN_00408
+MTVVEILWYVAGVLAVALGLAVSIALHEIGHLVPAKLFGVRVTQYMIGFGPTLVSWRRGE
+TEYGFKAVPLGGYVAMIGMLPPPRPGQTPRAASTGFVQQLGRMADDARAQAAEEVRPGDE
+HRRFLALPVWKRVVIMLGGPFMNLLIALGATALLVTTVGTSQPSTTVAEVYRCVVTMQEQ
+QARAASGG-TEDCRPGDPAAPAHEAGLRPGDTVLAFDGRPVSDWDALSAAIRDRAGQPTR
+IEWERDGERMSATLTPRLTERPVTDALGRPERAPDGTVATHEVGFIGMGAQLETVRGTPL
+DAGPLVAQQVRGVVDVVLVLPQRLWDTAVAVVTPAERDPDGPMSVVGVGRIAGEAAALEE
+ATLTDKAALLLSLLAGVNVALMVFNLIPLLPLDGGHVAGALWEAVRRGWARITGRPDPGP
+FDLARMLPLTYAVGAAMLLMGVILIVADIVEPVRLF
+>TT9_LFPAFLNI_00641
+MTVVEILWYVAGVLAVALGLAVSIALHEIGHLVPAKLFGVRVTQYMIGFGPTLVSWRRGE
+TEYGFKAVPLGGYVAMIGMLPPPRPGQTPRAASTGFVQQLGRMADDARAQAAEEVRPGDE
+HRRFLALPVWKRVVIMLGGPFMNLLIALGATALLVTTVGTSQPSTTVAEVYRCVVTMQEQ
+QARAASGG-TEDCRPGDPAAPAHEAGLRPGDTVLAFDGRPVSDWDALSAAIRDRAGQPTR
+IEWERDGERMSATLTPRLTERPVTDALGRPERAPDGTVATHEVGFIGMGAQLETVRGTPL
+DAGPLVAQQVRGVVDVVLVLPQRLWDTAVAVVTPAERDPDGPMSVVGVGRIAGEAAALEE
+ATLTDKAALLLSLLAGVNVALMVFNLIPLLPLDGGHVAGALWEAVRRGWARITGRPDPGP
+FDLARMLPLTYAVGAAMLLMGVILIVADIVEPVRLF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001565.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001565.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0b440ef03e63312b59b905aac0d942ab8ce9d139
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001565.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02292
+MTHGSLTDYTLPAAGAPSASNAHDDGAPRAVALIGSTGSIGTQGLDVIAQDPARFRAVAL
+SGGANTGLLAEQAVRFEVQAVGSATATEDELRAAIADAAARLGLKPAPRPALFTGPTAAE
+RIAAWKGADTVLNGITGSIGLRPTLAALHAGHRLALANKESLIVGGALVKAAAAPGQLVP
+VDSEHSALAQALRGGTADEVRRLVLTASGGPFRGLDRAALAEVTPAQALAHPTWDMGRVV
+TTNSASLVNKALEVIEAHLLFDVPLERIDVVVHPQSVVHSMVEFTDGSTLAQASPPDMRL
+PIALGLAWPARVPGAAAGCDWTRAATWAFEPLDEDAFPAVRAAKEAAAASPTHMAVFNAV
+NEEAVDAFHDGRIRFDAIVDTVRAVVGEYEPARVLGAAGHGHVAQDLTVEAVLAAEDWAR
+TAARARW
+>KBS0714_MOLHKGIG_00670
+MTHGSLTDYTLPAP-AP----AHDGGAPRAVALIGSTGSIGTQGLDVIAQDPARLRAVAL
+AGGANTTLLAEQAVRFEVEAVGSAAAGEEELRAALADAAARLG-RPAPRPVLFTGPRAAE
+QIAAWPGADTVLNGITGSIGLRPTLAALHAGHRLALANKESLIVGGALVKAAARPGQLVP
+VDSEHSALAQALRGGTADEVRRLVLTASGGPFRGLDRAALHAVTPAQALAHPTWDMGRVV
+TTNSASLVNKALEVIEAHLLFDVPLDRIDVVVHPQSVVHSMVEFVDGSTLAQASPPDMRL
+PIALGLCWPRRLPGAAPACDWTRAATWTFEPLDEEAFPAVRAAKEAAAASPTHMAVFNAA
+NEESVDAFHAGALPFDGIVDTVRAVVADYAPEHVLAAAGHDPAPTGLTVDAVLAAEAWAR
+RAARARW
+>KD337_NAFOICDF_02154
+MTHGSLTDYTFPADHGP----GASDGACRAVALVGSTGSIGTQGLDVIAQAPERFRAVAL
+SGGANTALLAEQAVAHGVEAVGSAAASEEELRAALADAAARLR-RPDPRPALFTGPEAAA
+RIAAWEGADTVLNGITGSIGLAPTLAALRAGHRLALANKESLIVGGALVKAAAAPGQLVP
+VDSEHSALAQALRGGTAGEVRRLVLTASGGPFRGFSAAQLAEVTPAQALAHPTWDMGRVV
+TTNSASLVNKALEVIEAHLLFDVPLERIDVVVHSQSVVHSMVEFTDGSTLAQASPPDMRL
+PIALGIGWPHRVLGAAAGCDWTQAAQWTFEPLDEAAFPAVSLAKEAAASSDTHMAVFNAA
+NEEAVDAFHGGRIRFDQIVETVRAVLGEYRPDGVLAAAGADP--DELTVEAVLAAEDWAR
+AAARGRW
+>SA211_MHAAABBN_00407
+MTHGSLTDYTLPAP-AP----ADDDGAPRAVALIGSTGSIGTQGLDVIAQDPTRLRAVAL
+AGGANTTLLAEQAVRFEVEAVGSAAAGEEELRAALADAAARLG-RPSPRPVLFTGPCAAE
+QIAAWPGADTVLNGITGSIGLRPTLAALHAGHRLALANKESLIVGGALVKAAAAPGQLVP
+VDSEHSALAQALRGGTADEVRRLVLTASGGPFRGLDRAALHAVTPAQALAHPTWDMGRVV
+TTNSASLVNKALEVIEAHLLFDVPLDRIDVVVHPQSVVHSMVEFVDGSTLAQASPPDMRL
+PIALGLCWPRRLSGAAPACDWTRAATWTFEPLDEEAFPAVRAAKEAAAASPTHMAVFNAA
+NEESVDAFHAGALPFDGIVDTVRAVVADYAPEHVLAAAGHDPAPTGLTVDAVLAAEAWAR
+RAARARW
+>TT9_LFPAFLNI_00640
+MTHGSLTDYTLPAP-AP----ADDDGAPRAVALIGSTGSIGTQGLDVIAQDPARLRAVAL
+AGGANTTLLAEQAVRFEVEAVGSAAAGEEELRAALADAAARLG-RPAPRPVLFTGPRAAE
+QIAAWPGADTVLNGITGSIGLRPTLAALHAGHRLALANKESLIVGGALVKAAARPGQLVP
+VDSEHSALAQALRGGTADEVRRLVLTASGGPFRGLDRAALHAVTPAQALAHPTWDMGRVV
+TTNSASLVNKALEVIEAHLLFDVPLDRIDVVVHPQSVVHSMVEFVDGSTLAQASPPDMRL
+PIALGLCWPRRLPGAAPACDWTRAATWTFEPLDEEAFPAVRAAKEAAAASPTHMAVFNAA
+NEESVDAFHAGALPFDGIVDTVRAVVADYAPEHVLAAAGHDPAPTGLTVDAVLAAEAWAR
+RAARARW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001566.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001566.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c17ef5c90527878d181b5911007bede1c7fffc64
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001566.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02293
+MSALTPLLQAAPEAVGSPAVNIGIFLAFVVVTLVIVIRASKTSSSSADYYAGGRGFSGTQNGTAIAGDYLSAASFLGIVG
+AIALYGYDGFLYSIGFLVAWLVALLLVAELLRNTGKFTMADVLSFRLRQKPVRIAAAFGTMAVCLFYLLAQMAGAGGLVS
+LLLNINDRAGQALVIAIVGVLMIVYVLIGGMKGTTYVQIIKAILLIAGAGVMTVWSLAMFGFDFNAMLGAAVELNPEGEA
+ILEPGLQYGASALTRLDFVSLGIALVLGTAGLPHVLMRFYTVPTAKEARKSVVWAIVLIGAFYLFTLVLGYGAGALIGPE
+RIMAAPGGQNSAAPLLAFELGGSILLGVISAVAFATILAVVAGLAITAAASFAHDVYGSVIAKHQLTPNEEVRIGKITVV
+VIGLLAIVGGIAAQGQNVAFLVALAFAVAASANLPTILYSLFWRRFTTRGAVWSMYGGLLSAIILIVLSPVMSGAPTSMI
+PGADFAIFPLKNPGIVSIPLAFFLGWLGSVTSSRAEDPDKQAEMEVRSLTGIGAEKPVQH
+>KBS0714_MOLHKGIG_00669
+MSALTPLLQAAPQTVGNPAVNIGIFVAFVVVTLVIVIRASKTNASSADYYAGGRGFSGTQNGTAIAGDYLSAASFLGIVG
+AIALYGYDGFLYSIGFLVAWLVALLLVAELLRNTGKFTMADVLSFRLQQRPVRIAAAFGTMAVCLFYLLAQMAGAGGLVA
+LLLNINDRAGQALVIVIVGVLMIVYVLIGGMKGTTYVQIIKAVLLIAGAGIMTVWTLALFGFDFNALLGAAVEKNPKGEA
+ILEPGLQYGASALTRLDFVSLGLALVLGTAGLPHVLMRFYTVPTAKEARKSVVWAIVLIGAFYLFTLVLGYGAGALIGPE
+RILAAPGGQNSAAPLLAFELGGSILLGLISAVAFATILAVVAGLAITAAASFAHDVYGSVIAKHPLTPQEEVRIGKITVV
+VIGVLAIVGGIAAQGQNVAFLVALAFAVAASANLPTILYSLFWRRFTTRGAVWSMYGGLLSAIILIVLSPVMSGTPTSMI
+PGADFAVFPLKNPGIVSIPLAFFLGWLGSVTSSRAEDPDKQAEMEVRSLTGIGAEKPVQH
+>KD337_NAFOICDF_02155
+MSTFALPLAAA---VGDPVVNIGIFVAFVAVTLVIVIRASKKNASAADYYAGGRGFSGTQNGTAIAGDYLSAASFLGIVG
+AIALYGYDGFLYSIGFLVAWLVALLLVAELLRNTGKFTMADVLSFRLRQKPVRIAAAFGTMAVCLFYLLAQMAGAGGLVA
+LLLNITDKGGQALVIVIVGVLMIVYVLVGGMKGTTYVQIIKAILLITGAGVMTLWSLALFGFDFNAMMGAAVQLNPQGEA
+ILEPGLQYGKNFTTRLDFLSLGLALVLGTAGLPHVLMRFYTVPTAKEARTSVVWAIVLIGAFYLFTLVLGYGAGALIGPE
+KILAAPGGVNSAAPLLAFELGGSILLGLISAVAFATILAVVAGLALTAAASFAHDVWGSVIAKEPLTPEEEVRIGKITVV
+VIGVLAIVGGIAAQGQNVAFLVALAFAVAASANLPTILYSLFWRGFTTRGAVWSMYGGLIASIVLIVLSPVMSGAETSMI
+PTADFAVFPLKNPGIVSIPLAFVLGWLGSVTSKDVEDPDKQAEMEVRSLTGVGAEKPVAH
+>SA211_MHAAABBN_00406
+MSALTPLLQAAPQTVGNPAVNIGIFVAFVVVTLVIVIRASKTNASSADYYAGGRGFSGTQNGTAIAGDYLSAASFLGIVG
+AIALYGYDGFLYSIGFLVAWLVALLLVAELLRNTGKFTMADVLSFRLQQRPVRIAAAFGTMAVCLFYLLAQMAGAGGLVS
+LLLNINDRAGQALVIVIVGVLMIVYVLIGGMKGTTYVQIIKAILLIAGAGIMTVWSLALFGFDFNAMLGAAVEMNPKGEA
+ILEPGLQYGASALTRLDFVSLGIALVLGTAGLPHVLMRFYTVPTAKEARKSVVWAIVLIGAFYLFTLVLGYGAGALIGPE
+RILAAPGGQNSAAPLLAFELGGSILLGLISAVAFATILAVVAGLAITAAASFAHDVYGSVIAKHPLTPQEEVRIGKITVV
+VIGVLAIVGGIAAQGQNVAFLVALAFAVAASANLPTILYSLFWRRFTTRGAVWSMYGGLLSAIILIVLSPVMSGTPTSMI
+PGADFAVFPLKNPGIVSIPLAFFLGWLGSVTSSRAEDPDKQAEMEVRSLTGIGAEKPVQH
+>TT9_LFPAFLNI_00639
+MSALTPLLQAAPQTVGNPAVNIGIFVAFVVVTLVIVIRASKTNTSSADYYAGGRGFSGTQNGTAIAGDYLSAASFLGIVG
+AIALYGYDGFLYSIGFLVAWLVALLLVAELLRNTGKFTMADVLSFRLQQRPVRIAAAFGTMAVCLFYLLAQMAGAGGLVS
+LLLNINDRAGQALVIVIVGVLMIVYVLIGGMKGTTYVQIIKAILLIAGAGIMTVWSLALFGFDFNAMLGAAVEMNPKGEA
+ILEPGLQYGASALTRLDFVSLGIALVLGTAGLPHVLMRFYTVPTAKEARKSVVWAIVLIGAFYLFTLVLGYGAGALIGPE
+RITAAPGGQNSAAPLLAFELGGSILLGLISAVAFATILAVVAGLAITAAASFAHDVYGSVIAKHPLTPQEEVRIGKITVV
+VIGVLAIVGGIAAQGQNVAFLVALAFAVAASANLPTILYSLFWRRFTTRGAVWSMYGGLLSAIILIVLSPVMSGTPTSMI
+PGADFAVFPLKNPGIVSIPLAFFLGWLGSVTSSRAEDPDKQAEMEVRSLTGIGAEKPVQH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001567.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001567.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0786f9f21af6c603308ac7cefbd81a6dea8d6443
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001567.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02294
+MSSSEPTAPAPTAAQFRAAQQSEEFTELRSTYRSFAFPMTVAFFVWYLVFVIAGAFFPEF
+MSIRLGGNITLGLVLGLLQFVTTFLITFAYVRFSNRTLDPRATALRERLEREAAGGAPET
+PEATR
+>KBS0714_MOLHKGIG_00668
+MSSSEPTAPVPTAAQFRAAQQSEEFTELRRTHRSFAFPMTVAFFVWYLVFVIVGAFFPEF
+MAIRLGGNITLGLILGLLQFVTTFLITFAYVRFSNRTLDPRATALRERLEREAA-GAHEN
+PEATR
+>KD337_NAFOICDF_02156
+MSTGPHTPPAPTPAQFRAAQDSPEFRELRRTQRSFAFPMTVTFFVWYLLFVILGAFFPQV
+MAVRLGGNITLGLVLGLLQFVTTFAITFAYVRFSNRVLDPRAAALRERLEREAAGAAPET
+PEVAL
+>SA211_MHAAABBN_00405
+MSSSEPTAPVPTAAQFRAAQQSEEFIELRRTHRSFAFPMTVAFFVWYLVFVIVGAFFPEF
+MAIRLGGNITLGLILGLLQFVTTFLITFAYVRFSNRTLDPRATALRERLEREAA-GAHEN
+PEATR
+>TT9_LFPAFLNI_00638
+MSSSEPTAPVPTAAQFRAAQQSEEFIELRRTHRSFAFPMTVAFFVWYLVFVIVGAFFPEF
+MAIRLGGNITLGLILGLLQFVTTFLITFAYVRFSNRTLDPRATALRERLEREAA-GAPEN
+PEATR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001578.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001578.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c8db16993216989a2b9aa978c9ebb55e6435b581
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001578.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02312
+MTARSPAP---RRARPAASPHRLLAVLLLCVLGLALAFALGPGIGAATPSSIRAEDGPTA
+DARLAVAATPAR--------AWTAPAAGVRPGDVLRPFAAPERPWGRGHRGVDLAVSPGA
+AVLAPAAGTVVFAGTVVDRPVVTLEHADGTRSSLEPVEAAAPVGARLERGAPLGTVADAP
+AHCAVPCVHWGVRVPDGWRFGDATFDRYLDPLVLIGWSGPSVLWPHAAPPPAGPAPARE
+>KBS0714_MOLHKGIG_00651
+MTPRTHLPRPLPRPHIAG----CVAAALLA----WLVLASGVGGLDAVPRATSAPSG--R
+DALLLVAASPAGPGSTAAPVAWHAPVAGAAPDDVLRAFVAPERPWGRGHRGVDLAVPSGA
+AIRAPAAGRVVFAGVVVDRPVLTLEHEDGTRSSLEPVEADVAVGAVVAAGDPVGRLAGAP
+PHCTRACVHWGVREPDGWRVGDAAFDRYLDPLVLIGWSGPSVLWPHAAPHPARP-----
+>KD337_NAFOICDF_02169
+MNEASTPP---PRLRAAA----VLAVALLA-----------------TASAARAEDA---
+---------PAAPPVTG---ALLAPTPGAGPSDVLRGFAGPERPWSRGHRGVDLATSSG-
+LVTAPAAGTVRFVGSVAGRGVLTLAHPDGTLSSFEPVTSDLTAGQAVAAGQEVARVQEGA
+AHCPVRCVHWGVRREDAWAVGAARFDRYLDPLLLLGWSGPSVLWPVGDAG---------
+>SA211_MHAAABBN_00388
+MTPRTLLPRPLPRPRIAG----CVAAALLA----WLVLALEMGDLGPASRATPAPST--R
+DALLLVAASPAGPGATAAPVAWHPPVAGAAPDDVLRAFVAPERPWSRGHRGVDLAVQTGA
+PIQAPAAGRVVFAGVVVDRPVLTLEHADGTRSSLEPVEADVAVGAVVDAGDPVGRLAGAP
+PHCPRACVHWGVREPDGWRVGDAAFDRYLDPLVLIGWSGPSVLWPHAAPHPARP-----
+>TT9_LFPAFLNI_00621
+MTPRTLLPRPLPRPRIAG----CVAAALLA----WLVLALGMGDLGPVSRATPAPST--R
+DALLLVAASPAGPGATAAPVAWHPPVAGAAPDDVLRAFVAPERPWSRGHRGVDLAVQTGA
+PIQAPAAGRVVFAGVVVDRPVLTLEHEDGTRSSLEPVEADVAVGAVVAAGDPVGRLAGAP
+PHCTRACVHWGVREPDGWRVGEAAFDRYLDPLVLIGWSGPSVLWPHAAPHPARP-----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001579.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001579.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a9c4c951afbad20d537382a18d4bbdccfd8c65a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001579.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02314
+MSVTSSRAASRRAPRTAAASLALALGAGALAGVGSVTAAETAQAVETTYTVRAGDGWWVI
+SQRTGVSMSTLQSLNGMTSATMLHPGMVLKTSGTAAPAPAPAP--SASTYTVLAGDGWWI
+ISYRTGVSASVLQSINGMTSSTVLHPGMVLK-TSVVASSAPAPAPAPVT----NGKQAAV
+DFVRSTVQNPSSYYLWGGNGPYGFDCSGLTQQAMAKAGISIPRRAGDQYNAAKSYVPISQ
+AQPGDLVFYANQSTGRIYHVAMYMGGGQLAHALNEDAGLLFTSTTIMKSDMLAVAARY
+>KBS0714_MOLHKGIG_00649
+MSVTSSHAAVRRAPRTAAASVALALGAAALTGVGTVSVAETAQAAETAYTVRSGDGWWII
+AQRTGVSMSRLQSLNGMTAATVLHPGMVLKTSGTATPTPAPAPSTSGSTYTVLAGDGWWI
+ISYRTGVSASILQSINGMSSSTMLHPGMVLKTTSVSTSSAPAVAPAPAP----ASKQAAV
+DYVRSAVRNPSSYYVWGGNGPSGFDCSGLTQQAMARAGISIPRRAGDQYLAAKSYVPISQ
+AQPGDLVFYANQSTGRIYHTAMYMGGGQLAHALNEDAGLVFTSTTIMKSDMLAVAARY
+>KD337_NAFOICDF_02171
+MPEALLTPA--RRPRAAAASLALALGAGAGVTAGAAVIAPQAVAAE-TYTVQAGDGWWII
+SQRTGVSMATLMQLNGMTSADMLHPGMVLKTSGTVTAA--------AGTYTVKAGDGWYA
+ISRATGVPVSTLTSLNGMTITSMLYPGMVLKTTGTPASTAPAPAPAPAPVVRQSSKQAAI
+DFAVAKVNDPNTYYAWGGNGPYGYDCSGLTKAAFAAAGITIPRVSHDQYVNAPAYAPLSQ
+AQPGDLVFWANQSTGRVYHVAVYIGNGKVAHALNTTDDLVITSTDVMTSNRLAVVGRY
+>SA211_MHAAABBN_00386
+MSVTSSHAASRRAPRTAAASVALALGAAALTGVGTVSVAETAQAAETTYTVRSGDGWWII
+AQRTGVSMSTLQSLNGMTAATVLHPGMVLETSGTATPAPAPAPSTSGSTYTVLAGDGWWI
+ISYRTGVSASILQSINGMTSSTMLHPGMVLKTTSVSTSSAPALAPASAP----ASKQAAV
+DYVRAAVRNPSSYYAWGGNGPSGFDCSGLTQQAMAQAGISIPRRAGDQYLAAKSYVPISQ
+AQPGDLVFYANQSTGRIYHVAMYMGGGQLAHALNEDAGLVFTSTTIMKSDMLAVAARY
+>TT9_LFPAFLNI_00619
+MSVTSPHAAARRAPRTAAASVALALGAAALTGVGTVSVAETAQAAETTYTVRSGDGWWII
+AQRTGVSMSTLQSLNGMTAATVLHPGMVLKTSGTATPAPAPAPSTSGSTYTVLAGDGWWI
+ISYRTGVSASVLQSINGMTSSTMLHPGMVLKTTSVSTSSAP--APAPAP----ASKQAAV
+DYVRSAVRNPSSYYVWGGNGPSGFDCSGLTQQAMARAGISIPRRAGDQYLAAKSYVPISQ
+AQPGDLVFYANQSTGRIYHTAMYMGGGQLAHALNEDAGLVFTSTTIMKSDMLAVAARY
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001582.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001582.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5baf2c79a9f839127a32d10bc627c855c0131710
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001582.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02320
+MTTPEKKDAAAATPVQDSQLAHDDPRTRHPKLDAPEQRQEEPGLDVKTEPVPDIGLDSYR
+GLGRLEGRKALITGGDSGIGAAVAVAYAREGADVAIAYLPEEQPDADRVLAAIEAAGRTA
+VALPGDLMDAGYREGLVEEAATALGGLDILVNNAGKQIISESLEDLTDQQVLETFQVNIL
+SMFTLSRAALTHMGPGSTIINTTSVQAYNPNPMILDYAATKAAINNFTKGLAQQLGERGI
+RVNAVAPGPVWSVLQVSYGQPKEKLPVFGHDTPTGRGGQPVEMAPAYVFLASGESSYVNG
+ETLNANGGTPTP
+>KBS0714_MOLHKGIG_00642
+MTTPEKKDDAPAIPVQDSQLAHDDPRTRHPKLRVDKQRQPEPGLDVKTDPVPDIGLDSYR
+GMGRLTGRKALITGGDSGIGAAVAIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTA
+VALPGDLMDADYRASLVDEAAQRLGGLDILVNNAGKQFISDDLTDLTDEQVHETFQINIM
+SMFTLSRAALKHMGPGSTIVNTTSVQAYNPNPRLLDYAATKGAINNFTKGLAEQLGPKGI
+RVNAVAPGPIWTVQHVSYGEPEEKLPEFGHSNPIGRAGQPVEMAPAYVFLASGESSYVNG
+ETLNANGGTPTP
+>KD337_NAFOICDF_02183
+MTTPEKKDDAPAIPVQDSQLAHDDPRTRHPKLHITKQRQPEPGLDVKTDPVPDIGLDSYR
+GAGRLTGRKALITGGDSGIGAAVAIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTA
+VALPGDLMDVDYRASLVDEAAQRLGGLDILVNNAGKQFISDDLVDLTDEQVHETFQINIM
+SMFTLSRAALKHMGPGSTIVNTTSVQAYNPNPRLLDYAATKGAINNFTKGLAEQLGPKGI
+RVNAVAPGPIWTVQHVSYGEPEEKLPEFGHSTPLGRAGQPVEMAPAYVFLASGESSYVNG
+ETLNANGGTPTP
+>SA211_MHAAABBN_00379
+MTTPEKKDDAPAIPVQDSQLAHDDPRTRHPKLRIAKQRQPEPGLDVKTDPVPDIGLDSYR
+GMGRLTGRKALITGGDSGIGAAVAIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTA
+VALPGDLMDADYRASLVDEAAQRLGGLDILVNNAGKQFISDDLTDLTDEQVHETFQINIM
+SMFTLSRAALKHMGPGSTIVNTTSVQAYNPNPRLLDYAATKGAINNFTKGLAEQLGPKGI
+RVNAVAPGPIWTVQHVSYGEPEEKLPEFGHSTPIGRAGQPVEMAPAYVFLASGESSYVNG
+ETLNANGGTPTP
+>TT9_LFPAFLNI_00612
+MTTPEKKDDAPAIPVQDSQLAHDDPRTRHPKLHITKQRQPEPGLDVKTDPVPDIGLDAYR
+GAGRLTGRKALITGGDSGIGAAVAIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTA
+VALPGDLMDADYRAALVDEAAQRLGGLDILVNNAGKQFISDDLTDLTDEQVHETFQINIM
+SMFTLSRAALKHMGPGSTIVNTTSVQAYNPNPRLLDYAATKGAINNFTKGLAEQVGPKGI
+RVNAVAPGPIWTVQHVSYGEPEEKLPEFGHSTPIGRAGQPVEMAPAYVFLASGESSYVNG
+ETLNANGGTPTP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001585.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001585.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a5d9ad02fc83502a5f6e8fc383d71c411220e68
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001585.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02343
+----MRTPATDTDSPVKTEPLTDLPTERAADPDP-SAPAPVPAVA---RHRPFGLVLLVT
+GVVGWVASAILVLERLELYEDAGHITSCDINPWVSCGRVMGTWQSELFGFPNPLIGIVAF
+AVVISTAMVVLSGARPGRWYWAGLQAGVTLGMVFVAWLWFQALFVIHILCLYCMIVWAAM
+IPLFILLTVRNLAHGVIPAPPGVVRFATGWAGTLIAVAYVTVTGSVFVQFLPAFTGY
+>KBS0714_MOLHKGIG_00612
+----MTTPTIPTDHPI----------EHRVDTGPASEEAGMPVAA---RHRPFGVVLLVT
+GVVGWVASAILVLERLALYENPGHTTSCDINPWVSCGRVMGTWQSELFGFPNPLIGIVAF
+AVVIATAMVVLSGARPGRGYWAGLQAGVTLGMGFVAWLWFQALYEIYILCLYCMIVWAAM
+IPLFILLTARNLAHGVIPAPPGVVRFATGWAGTLIAVAYVAVAGSVFVQFLPAFTGL
+>SA211_MHAAABBN_00328
+----MSVPDTDTNSPVTIPTTT---TDRPAGTGQASDVAGIPTVA---RHRPFGLVLLIT
+GVVGWVASAILVLERLELYEDAGYITSCDINPWVSCGKVMGTWQSELFGFPNPLIGIVAF
+AVVITTAMVTLSGASPGRWYWAGLQAGVTAGTVFTIWLWSQALFEIHILCLYCMIVWAAM
+IPLFILLTMRNLAHGVIPAHAAVVRFSAGWAGTLVAIAYVAVAASVFWTFFPALTGY
+>SA211_MHAAABBN_01772
+MTDRLTEPTAPS------------------AASPVSAAGPAPAPAWFTGRRAFGLVLLVT
+GAVGWIASATLVLERLALYENPGHTTSCDINPWVSCGRVMGTWQSELFGFPNPLIGIVAF
+AVVISTAMVVLSGARPGRGYWLGLQAGVTLGIGFVAWLWFQALYEIYILCLYCMIVWAAM
+IPLFLLLTARNLAHGVIPAPPGVVRFATGWAGTLIAVAYVAVAGSVFVQFLPAFTGF
+>TT9_LFPAFLNI_02009
+----MSVPDTDTNSPVTIPTTT---TDRPAGTGQASDVAGIPTVA---RHRPFGLVLLIT
+GVVGWVASAILVLERLELYEDAGYITSCDINPWVSCGKVMGTWQSELFGFPNPLIGIVAF
+AVVITTAMVTLSGASPGRWYWAGLQAGVTAGTVFTIWLWSQALFEIHILCLYCMIVWAAM
+IPLFILLTVRNLAHGVIPAHAAVVRFSAGWAGTLVAIAYVAVAASVFWTFFPALTGY
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001586.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001586.fa
new file mode 100644
index 0000000000000000000000000000000000000000..496bdce7ebcfdcc41ecf1961b8cfc81614a3b6ad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001586.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02350
+MNATSLARKTALTGTGLLAALALAACGTADDDTAANPQETAVQQSPTQAATTAPASAS--
+GSASASASGSASASASGSASPAAASGSVERQGDDPAYAAIDAILGLHDDGVIVEMDLDDD
+DAKWEVDVVVGDDVKEYDVTTGGQVSEGVRPQIDDDVRRAGEAQVTAETAISTALQGRTD
+QTVDEVDLDEEGGTLVWKVELDRENGEDGAEVKIDAKTGDVIEVEEG
+>KBS0714_MOLHKGIG_00584
+MTITTLTRKTALTGTGMLAALALAACGTTSDNGDDGSASPEVDASSSLASTPATDDAS--
+GSA---TSSSASSASASSTAAAAGSDSATGQADDPAYAVIDAVLEKYGDGIIVAVDADDD
+DTTWEVDVVVGEEVKELDVTADGDITETDRESDLEDVQKAKDAEVTAQQALDTAREGRDG
+VTLDEMDLDDDNGTLQWEVGFDREDGSDGPEVEIDATSGEVLTVDEH
+>KD337_NAFOICDF_02245
+MTITTLTRKTALTGTGVLAALALAACGTTADNGDDGSASLEVDASSAVASTPATEDASTT
+SAS----ASSASSAPASSTAAAAGRDSATGQADDPASAVIDAVLEKYGDGIIVGVDANDD
+DTTWEVDVVVDKEVKELDVTADGDITETDRESDPEDVQKAKDAEVTAQQALDTARKGRDG
+VTLDEMDLDDDNGTLQWEVEFDREDGSDGPEVEIDATSGEVLTVDEH
+>SA211_MHAAABBN_00317
+MTITTLTRKTALTGTGVLAALALAACGTTADNGDDGSVSPEVDASSAVASTPATDDASTT
+SAS---ASSSASSTSASSTAAAASSGSGTGQADDPAYAVIDAVLEKHGDGIIVEVDANDD
+DTTWEVDVVVGEEVKELDVTADGDITETDRESDLEDVQKAKDAEVTAQQALDTAREGRDG
+VTLDEMDLEDDNGTLQWEVGFDREDGSDGPEVEIDATSGEVLTVDER
+>TT9_LFPAFLNI_00585
+MTITTLTRKTALTGTGMLAALALAACGTTSDNGDDGSASPGVDASSAVASTPTTDDAS--
+GSA----SSSASSASASSTAAAAGSGSATGQADEPAYAVIDAVLEKYADGIIVAVDANDD
+DTTWEVDVVVGEGAKELDVTADGDITETDRESDPEDVQKAKEAEVTAQQALDTAREGRDG
+VTLDEMDLEDDNGTLQWEVRFDREDGSDGPEVEIDATSGEVLTVDER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001587.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001587.fa
new file mode 100644
index 0000000000000000000000000000000000000000..37bee65604620d29503713b555801bb14f50e748
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001587.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_02351
+---MAGLIVRKDIDLVRERTDLKAVVEEFVTLRSAGVGSFKGLCPFHDERTPSFHVRPGVGTYHCFGCGEHGDVISFLME
+LEHTTFTETVERLAARVGVELHYEDGGTGPDKAETGRRRRLLEANKVADEFYRRALGSAEAQTGRDFLTQRGFTQEHAEQ
+FGLGYAPQGWSHLLDHLRQKGFRDEELRASGLFSEGQRGLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTP
+ETPLYKKSQVLYGIDLAKRTIAKERQLVLVEGYTDVMAAHLAGVGTAVATCGTAFGADHIKMARRLISDDGTGGEVIFTF
+DGDEAGQKAALKAFDEDHRFLAKTYVAVEPSGMDPCDLRMQQGDEAVRALIASRRPLFEFAIRAGLKDYDLDTVEGRAGA
+LRHAAPIVAGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRGQRRGGGSEPRREPERGPEPDQAPGQGRGPAPEGPS
+VGPQGRHGEAAAPAPQVLVPVDPRDPVARCERESLEVVLQHPTLLSAEQWTALYAARFTIPQYAAVHHGVKVAGSSGATP
+QRWVDAVRYAVPQEVAGVVSELAVRDLPARTPEDVDRYCRDIMNRLFALQIVHRKEELLGRLQRLGPDGDPAEFTALNSE
+LMELEARRRALRADD
+>KBS0714_MOLHKGIG_00583
+---MAGLIVRKDIDLVRERTDLKAVVEEFVTLRSAGVGSFKGLCPFHDERTPSFHVRPGVGTYHCFGCGAHGDVISFLME
+LEHTTFTETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFEANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHATQ
+FGLGYAPQGWSHLLDHLRQRGFRDEELRASGLVSEGQRGLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTP
+ETPLYKKSQVLYGIDLAKRTIAKERQLVLVEGYTDVMAAHLAGVGTAVATCGTAFGADHIKVARRLISDDGTGGEVIFTF
+DGDEAGQKAALKAFDEDHRFLAKTFVAVEPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKDYDLDTVEGRAGA
+LRHAVPIVAGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRA------------PRRGPEPEARP----APADDGQA
+IGPQGRHGEAAAPAPRIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYAAVHQGVKMAGSAGATP
+QRWVDAVRDAVPQEVAGVVSELAVRDLPARTPEDVDRYCRDIMNRLFALQIVHRKEELLGRLQRLGPEGDPAEFTRLNSE
+LMELEARRRALRADD
+>KD337_NAFOICDF_02246
+MVRMAGLIVRKDIDLVRERADLKAVVEEFVTLRSAGVGSFKGLCPFHDERTPSFHVRPGVGTYHCFGCGEHGDVISFLME
+MEHTTFTETVERLAARAGVELHYED-GQGPDRAETSRRRRLLEANKLADEFYRARLAAPDAQPGRDFLTGRGFTQEHAEQ
+FGLGYAPQGWSALLDHLRQQGFRDDELRASGLFSEGQRGLYDRFRGRLLWPIRDMTGNTIGFGARKLFEDDPGPKYLNTP
+ETPLYKKSQVLYGIDLAKRAIAKERQLVLVEGYTDVMAAHLSGVETAVATCGTAFGADHIKIARRLISDDGTGGEVIFTF
+DGDAAGQKAALKAFDEDHRFLAKTFVAVEPNGLDPCDLRMQQGEEAVRALIASRRPLFEFAISAGLKDYDLNTVEGRAGA
+LRHAAPIVAGIKDSVLRPGYERELAGWLGMDPNVVSRAVAQELRGRRRGGPSGG--SAERTPAPERAP----EGANAGQA
+PGE-----EPAAPRPALIVPVDPRDPAARRERESLEVVLQHPTLLSAEQWTAFYQARFTIPQYAAVHHAVKVAGTAGATP
+SRWVDAVRDAAPGEVAGVVSELAVRDLPARTPEDVDRYCRDIMNRLFSLQIVHRKEELLGQLQRLGPEGDHDEFMRLNAE
+LMELETRRRALRADD
+>SA211_MHAAABBN_00316
+---MAGLIVRKDIDLVRERTDLKAVVEEFVTLRSAGVGSFKGLCPFHDERTPSFHVRPGVGTYHCFGCGAHGDVISFLME
+LEHTTFTETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFEANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAVQ
+FGLGYAPQGWSHLLDHLRQRGFRDEELRASGLVSEGQRGLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTP
+ETPLYKKSQVLYGIDLAKRTIAKERQLVLVEGYTDVMAAHLAGVGTAVATCGTAFGADHIKVARRLISDDGTGGEVIFTF
+DGDEAGQKAALKAFDEDHRFLAKTFVAVEPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKDYDLNTVEGRAGA
+LRHAAPIVAGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRA------------PRRGPEPEARP----APADDGQA
+IGPTGRHGEAAAPAPKIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYAAVHQGVKMAGSAGATP
+QRWVDAVRDAVPQEVAGVVSELAVRDLPARTPEDVDRYCRDIMNRLFALQIVHRKEELLGRLQRLGPEGDPAEFTRLNSE
+LMELEARRRALRADD
+>TT9_LFPAFLNI_00584
+---MAGLIVRKDIDLVRERTDLKAVVEEFVTLRSAGVGSFKGLCPFHDERTPSFHVRPGVGTYHCFGCGAHGDVISFLME
+LEHTTFMETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFEANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAVQ
+FGLGYAPQGWSHLLDHLRQRGFRDEELRASGLVSEGQRGLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTP
+ETPLYKKSQVLYGIDLAKRTIAKERQLVLVEGYTDVMAAHLAGVGTAVATCGTAFGADHIKVARRLISDDGTGGEVIFTF
+DGDEAGQKAALKAFDEDHRFLAKTFVAVEPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKDYDLNTVEGRAGA
+LRHAAPIVAGIKDAVLRPGYERELAGWLGLGPNAVHRAVAAAGRA------------PRRGPEPEARP----TPASDGQA
+VGPTGRHGEAAAPAPRIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYAAVHQGVKVAGSAGATP
+QRWVDAVRDAVPQEVAGVVSELAVRDLPARTPEDVDRYCRDIMNRLFALQIVHRKEELLGRLQRLGPEGDPAEFTRLNSE
+LMELEARRRALRADD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001590.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001590.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e36db3b026be4d9170c91c41b0e58294b66bc28a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001590.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02358
+M----------------AEGWAGPAHQPVLFGPQGRPPYAGRAVQTPGYTPWDRERWLPE
+PPKSSYRSDFERDRARVLHSAGLRRLGAKTQVVAPDADDFARTRLTHSLEVAQVGRELGR
+SLGCDPDLVDTACLSHDLGHPPFGHNGEKALDALSADVGGFEGNAQTLRLLARLEQKKLF
+EDGSSAGLNLTRAALDAACKYPWTREDAPLRPDGTRSRKFGVYEDDLPVFRWFREGVSGS
+RKSMEAQVMDLADDISYSVHDVEDGVVNAAFQLKWLAIP-EHRERVVETTRQWYLPLTDP
+AEVDEALARLEATDVWVSEMDGSRRALAAMKDMTSQLIGRFCTAAFDATRQVFGNEPLTR
+HGADVVVPAETETEIAVMKGIAAAYVMASEQRQPLYARQRELLAELVELLDASGDRYLEP
+MFAFDWREAADEAARRRVVLDQVASLTDSTALEWHHTLVQGAEFTRVWI
+>KBS0714_MOLHKGIG_00575
+MAEPTTPEPAAGAPAAPSSPWTGAAHQPVLFGPEGRPPYAGRAVQTPGYPPWDRERWLPE
+PPKSSYRSDFERDRARVLHSAGLRRLGAKTQVVAPDADDFARTRLTHSLEVAQVGRELGR
+SLGCDPDLVDTACLSHDLGHPPFGHNGEKALDALSEDVGGFEGNAQTLRLLARLEQKKLF
+ADGSSAGLNLTRAALDAACKYPWTREDAPLRPDGTRSRKFGVYEDDLPVFRWFRAGVPGT
+RTSMEAQVMDLADDISYSVHDVEDGVVNAVFQLKWLAIP-EHRERVVETTRQWYLPHTDP
+AEVDAALARLEATDVWVSEMDGSRRALAAMKDMTSQLIGRFCSAAFDATRQVFGNEPLTR
+HGADVVVPEETETEIAVMKGIAAAYVMTAEQRQPLYARQREVLAELVALLDATGDRYLEP
+MFTFDWAQAPDDAARRRVVIDQIASLTDSTAVEWHHTLVQGAEFRRVWI
+>KD337_NAFOICDF_02249
+M----------------------AEPQPTLFGPADRPPYAGRPVPTPGYTDWDRRRWLAE
+PPKSSYRSDFERDRARVLHSAALRRLGAKTQVVAPDLDDFSRTRLTHSLEVAQIGRELGR
+SLGCDPDLVDTACLSHDLGHPPFGHNGEKALDAVAEAAGGFEGNAQTLRLLARLEQKKSF
+PDGSSAGLNLTRAALDAACKYPWVREDAPLRPDGKRSRKFGVYADDLPVFEWFRQGVHGA
+RKSMEAQVMDLADDISYSVHDVEDGVVNSAFQLRWITEPGERRARVLETTRDWYLPGGDL
+EEIDAALTRLESQDVWMGEMDGSRRALAGMKDMTSQLIGRFCTAAFDATREVFGNEPLTR
+HAADVVVPAHTEHEIAVMKGIAAAFVMTSEQRQPLYARQRDLLTELVDLLMTTGDRYLDP
+MFAADFQDAADDAARARVVIDQVASLTDSTAIEWHRTLVRGETFQRVWL
+>SA211_MHAAABBN_00307
+MAEPTTPVPAAGTPAAPSSHWTGAAHQPVLFGPEGRPPYAGRAVQTPGYTPWDRERWLPE
+PPKSSYRSDFERDRARVLHSAGLRRLGAKTQVVAPDADDFARTRLTHSLEVAQVGRELGR
+SLGCDPDLVDTACLSHDLGHPPFGHNGEKALDALSEDVGGFEGNAQTLRLLARLEQKKLF
+ADGSSAGLNLTRAALDAACKYPWTREDAPLRPDGTRSRKFGVYEDDLPVFRWFRAGVPGT
+RTSMEAQVMDLADDISYSVHDVEDGVVNAVFQLKWLAIP-EHRERVVETTRQWYLPHTDP
+AEVDAALARLEATDVWVSEMDGSRRALAAMKDMTSQLIGRFCSAAFDATRQVFGNEPLTR
+HGADVVVPEETETEIAVMKGIAAAYVMTAEQRQPLYARQREVLAELVALLEATGDRYLEP
+MFTFDWAQAPDDAARRRVVIDQIASLTDSTAVEWHHTLVQGAEFRRVWI
+>TT9_LFPAFLNI_00576
+MAERTTPAPADGAPAAPSSPWTGAAHQPVLFGPEGRPPYAGRAVQTPGYTPWDRERWLPE
+PPKSSYRSDFERDRARVLHSAGLRRLGDKTQVVAPDADDFARTRLTHSLEVAQVGRELGR
+SLGCDPDLVDTACLSHDLGHPPFGHNGEKALDALSEDVGGFEGNAQTLRLLARLEQKKLF
+ADGSSAGLNLTRAALDAACKYPWTREDAPLRPDGTRSRKFGVYEDDLPVFRWFRAGVPGT
+RTSMEAQVMDLADDISYSVHDVEDGVVNAVFQLKWLAIP-EHRERVVETTRQWYLPHTDP
+AEVDAALARLEATDVWVSEMDGSRRALAAMKDMTSQLIGRFCSAAFDATRQVFGNEPLTR
+HGADVVVPEETETEIAVMKGIAAAYVMTAEQRQPLYARQREVLAELVALLDATEDRYLEP
+MFAFDWAQAPDDAARRRVVIDQIASLTDSTAVEWHHTLVQGAEFRRVWI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001593.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001593.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c321bbfedf7c0b90a08310510a502f30ee3d8c39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001593.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02373
+MN----------ECCNR-------------------------------------------
+--------------------------DIRYENPLYMAEAAATADLLAGGRLELGVSRGSP
+EAAKDGQAQFGYELADGQTWAGVTRKRGRRFLAAVRGEGIATPDLASGWAHSSAPLRIEP
+HSPGLADRIWWGSGSAGSAVEAAKDGYDMLSSTLLLQDDGRPFHVQQADQIAGYLEAYEA
+AGHAGTGRTAVTRSAFVIQDHEDELYFGRDRNSRESAGMLDGGRARSGPTYAGSAEEVAE
+KLAADDAVQAADWVLFANPNQLGPEYNAKIFAGWAEVWRLLGWDR
+>KBS0714_MOLHKGIG_00572
+MTRKHLGFLNFGHWIHRP-----GAEPDARQALDDVVAMAVAAEDAGLDGAWLRVHHFQR
+MFSSPFPILAAMAARTERISLGTGVIDLRYENPLYMAEAAATTDLISGGRLELGVSRGSP
+EAALDGQAQFGYALDEGQTWADVTRERGRRFLSAVRGEGIATPDLTSGWAHSSQPLRIEP
+HSPGLADRIWWGSGSVGSVAGAATDGYNMLSSTLLLQDDGRPFHVQQADQIARYREAFAA
+AGHAGPGRTAVTRSAFVIQDREDELYFGRERASRDSSGMLEGGAARSGPTYAGSAEEVAE
+KLAADDAVAAADWVLFANPNQLGVEYNAKIFAGWAEVWRLLGWDA
+>KD337_NAFOICDF_02253
+MTTKNLGFLNFGHWIHRPRVGRRPVEPDAKQAIDDVVQMAVDAEAAGLDGAWIRIHHFQR
+MFSSPFPILTAMAAHTERIHLGTGVIDLRYENPLYMAEAAATTDLLAGGRLELGVSRGSP
+EAARDGQAQFGYELADGQTWSDVARERGRRLLAGVRGEGIATPDLSSGWAHSSAPLRIEP
+HSPGLADRIWWGSGTVGSAVEAAKDGYGMLSSTLLLQDDGRPFHVQQADQIARYLEAYEA
+GGHTTPARTAVTRSAFVIQDHEDELYFGRDRHSRDSSGHLDGGAARSGPTYAGSAEEVAE
+LLAADDAVQAADWVLFANPNQLGAEYNAKLFAGWAEVWRLLGWDS
+>SA211_MHAAABBN_00296
+------------------------------------------------------------
+---------------------------MRYENPLYMAEAAATTDLISGGRLELGVSRGSP
+EAALDGQAQFGYALDEGQTWADVTRERGRRFLSAVRGEGIATPDLTSGWAHSSQPLRIGP
+HSPGLADRIWWGSGSTPSAVEAGRDGYNMLSSTLLLQDDGRPFHVQQADQIARYREAFAA
+AGHTGPGRTAVTRSAFVIQDREDELYFGRERASRDSSGMLEGGAARSGPTYAGSAEEVAE
+KLAADDAVAAADWVLFANPNQLGVEYNAKIFAGWAEVWRLLGWDA
+>TT9_LFPAFLNI_00573
+MTRKHLGFLNFGHWIHRP-----GTAPDARQALDDVVAMAVAAEDAGLDGAWLRVHHFQR
+MFSSPFPILAAMAARTERISLGTGVIDLRYENPLYMAEAAATTDLLSGGRLELGVSRGSP
+EAALDGQAQFGYALAEGQTWADVTRERGRRFLSAVRGEGIATPDLTSGWAHSSQPLRIEP
+HSPGLADRIWWGSGSVGSVAGAAADGYNMLSSTLLLQDDGRPFHVQQADQIARYREAFAA
+AGHAGPGRTAVTRSAFVIQDREDELYFGRERASRDSSGMLEGGAARSGPTYAGSAEEVAE
+KLAADDAVAAADWVLFANPNQLGVEYNAKIFAGWAEVWRLLGWDA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001594.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001594.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8b80ecea95f564e1b57c0b68e3ac66204bcef954
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001594.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02376
+MSGAY----DDDAGALFDSAAVSGGEVVLRPWRAGDDLALLQVWGDPANVQQHQDRAMLA
+EDAERPWRRALVAEDAGVPVAAGVVYASSLHPQRLWLYVETAAPERRRGIGRALVAALRG
+LAAEAHAAGTVPTAALKARFAKDALVPGT------------AVEEGVDTEAVRAQTAALA
+AGTEAFLAAEGFTPVQRSRRVAVAPGAIGLPDVRDEDRPDGVVLEEASTGSVELTQAVAA
+FYDAVHAWDPSTMSVGAAQQLLLGPATGASGAVVLRDAPKAEGGRIRAFAVSYTPERQEA
+PADVLVGWDPELSEEDALQSVADLLALLVAQHPVQVEVDEAMAPLERIVDGLIGGNAART
+LVDTYVFVDDAA--
+>KBS0714_MOLHKGIG_00567
+M----------DLPAG----------VTLRPWAEGDDLRLLEVWGDPADVQQHQDRAMLA
+PDADTPWRHTLVAEDDGVPVGAGTVVAQALHPRRLWLYLEVAPTARRRGIGSALLGALRD
+AVEQAHAAGQVTTTHLKTRFAVASRVAVATG----RSADAAEATAPAAGEEAGEAHAAQV
+AGTEAFLVAAAFSPVQRSRRVAVAPGSIALPPLRDEDHPEGAVLEDAATGSVELTRAVAA
+FYDAVHGWDPAQMSVGAAQQLILGPATGASGAVVLRDAPREEGGAVQAFAVSYTAERQDA
+PADVFLGWDPELPLDQAQLAAGQLLAMLVAQHPVQVEVDEAMTALEPILDGLIAQRAAAT
+LVDTRIWATDPA--
+>KD337_NAFOICDF_02260
+MSPRH----DDDAPAL--TAAVSGGEVVLRPWAEGDDLRLLEVWGDPADVQQHQDRAMLA
+ADADSPWRRTLVAEEDGVPVGAAVAFAQPLHPGRLWVYGEVARTVRGRGVGRALLEALRG
+LVAAAHEAGAVPTTELKARFAVASRVPVGGG----EVVEAAPGEAPEAGAAGAEAHAAQV
+AATERFLVAAGFTPVQRSRRIAVAPGVIALPALRDEEHPEGRVLEEISTGSVELTRAVAA
+FYDAAHAWDPSQMSVGAAQQLILGPQTGAAGAVVLRDAPREEGGTIQAFAVSYTAERQDA
+PADVLLGWDPSLGLEEAQLAVGDLLALLVAQHPVQVEADEAMTALEPILDALLAKRAAGT
+LVDTRVWATDPS--
+>SA211_MHAAABBN_00292
+MTGAAGAAGHDDGGALFDSAAVAGGEIVLRPWRPGDDLALLEVWGDPANAQQHQDRAMLA
+EDAERPWRRALVAEAAGVPVAAGVVYASSVHPRRLWLYVETAAAERRRGIGRALVAALRG
+LAAEAHAAGAIPTTALKARFAKDALVPGVSGADPQTDAEGPAGQPPVDTEAVRSQTAALA
+AGTEAFLVAEGFTPVQRSRRVAIAPGAIGLPDVRGEEHPDGVVLEEASTGSVELTQAVTA
+FYDAVHAWDPSTLSVGAAQQLLLGPATGAAGAVVLRDAPKAEGGRIRAFAVSYTPERQDA
+PADVLVGWDPELGEEDALQAVADLLALLVAQYPVQIEVDEAMAPLERIVDGLIGGNAART
+LVDTYVFVDDAPGA
+>TT9_LFPAFLNI_00570
+MTGAAGAAGHDDGGALFDSAAVGGGEIVLRPWRPGDDLALLEVWGDPANAQQHQDRAMLA
+EDAERPWRRALVAEAAGVPVAAGVVYASSVHPRRLWLYVETAAAERRRGIGRALVAALRG
+LAAEAHAAGAIPTTALKARFAKDALVPGVTGADPQTEADGATGRPPVDTDAVRSQTAALA
+AGTEAFLVAEGFTPVQRSRRVAIAPGAIGLPDVRGEEHPDGVVLEEASTGSVELTQAVTA
+FYDAVHAWDPSTLSVGAAQQLLLGPATGAAGAVVLRDAPKAEGGRIRAFAVSYTPERQDA
+PADVLVGWDPELGEKDALQAVADLLALLVAQYPVQIEVDEAMAPLERIVDGLIGGNAART
+LVDTYVFVDDATGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001597.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001597.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7ca3ebb6c23c335d8de0b7ac146179e4023c3c71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001597.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02379
+M-----NNDTANTAPSSETAPFTVRWSRPEGERTEDLLILLHGYGANEDDLFGLVPHLPE
+RFTVAAVRAPMTLQPGGYAWFPLSQDPVTGEIGSDAASVRTAIEDLHAWVGAVREGFRTV
+SLLGFSQGMALATSLLRLDPTAYAATVALSGFVVDPTREESGLAGLFDGDDEVARVRPKV
+FWGRGQDDPIISEARVEASHAWLNAHVDLMKIVYAGLPHAINQQELGHVKEYLEHMVR--
+-
+>KBS0714_MOLHKGIG_00564
+MPLARLAGVNANPTPAVEP---VVRWSRPEGERTEDLLIVLHGYGANEDDLFGLVPHLPE
+HVTVAAVRAPLPLQPGSHAWFPLSQDPVTGELGSTAEPVREAVEALHAWVQAVRGDFRTV
+SLLGFSQGMAMATSLLRLDPEAYACTVALSGFVVDPELDEPRLRELFTRDDDVARVRPKV
+FWGRGQEDPIISEPRVEETHAWLNAHVDLMKIVYAGLGHAINEQELGHVKEYLAHMVPPR
+G
+>KD337_NAFOICDF_02263
+M------NDTTPRDPA----PFAVRWSRPEGERTEHLLVLLHGYGADEDDLFGLVPQLPE
+AFTALAVRAPMDLPQGGAAWFPLTQDPATGEIGSDAGAVRAAVEDLHAWLPGVSGGFRTV
+SLLGFSQGMAMATSLLRLDPAAYAATVALSGFVVDPLHVEPELEGLFPADETVDAVTPKV
+FWGRGQEDPIISAQRVEESHGWLTAHTDLTKVVYAGLPHAISPQELGHVREYLTHVVL--
+-
+>SA211_MHAAABBN_00289
+--------MNANPTPAVEP---VVRWSRPEGERTEDLLIVLHGYGANEDDLFGLVPHLPE
+HFTVAAVRAPLPLQPGSHAWFPLSQDPVTGELGSTAEPVREAVEALHAWVQAVRGDFRTV
+SLLGFSQGMAMATSLLRLDPEAYACTVALSGFVVDPELTEPRLRELFTRDDDVARVRPKV
+FWGRGQEDPIISEPRVEETHAWLNAHVDLMKIVYAGLGHAINEQELGHVKEYLAHMVPPR
+G
+>TT9_LFPAFLNI_00567
+MPLARLAGVNANPTPAVEP---VVRWSRPEGERTEDLLIVLHGYGANEDDLFGLVPHLPE
+HVTVAAVRAPLPLQPGSHAWFPLSQDPVTGELGSTAEPVREAVEALHAWVQAVRGDFRTV
+SLLGFSQGMAMATSLLRLDPEAYACTVALSGFVVDPELAEPQLRELFTRDDDVARVRPKV
+FWGRGQEDPIISEPRVEETHAWLNAHVDLMKIVYAGLGHAINEQELGHVKEYLAHMVPPR
+G
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001598.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001598.fa
new file mode 100644
index 0000000000000000000000000000000000000000..83e15b79418a8f83892e62e1a6c937f4a0b70372
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001598.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02380
+MRAESPDGDDFPSESTGGGGRGRRGRLTDDGGASRLLLVSNQQESAPQHPAAAEAEPPAD
+VVTRAETAAHPWRRYVAIGDSFTEGIGDPDPDRPGYHRGWADRAAEELARRTPDGEDLAY
+ANLAVRGKLLDQIAADQVEPALALRPDLISVCAGGNDILRRADPDDVAVRLDAVVERLSA
+NGATVLLFNATDTKDTPVLGRIRGTVAIYNENVRTVALRHDALVADMWSLKELARREMWA
+EDRLHFSATGHHTIAAMVLDTLAVPHGLEPLRPEPAAPRTWRQARASDAAWARTHLAPWV
+VRRIRGVSSGDGVSAKRPVPAPLFGAEMPHGSDPTEPLDVVAR
+>KBS0714_MOLHKGIG_00563
+--------------------------------------MGN--PSSSQPPHASDATPVDD
+------PAAHPWRRYVAIGDSFSEGIGDPDPDRPGYHRGWADRLAEELSRLTPPGEDLAY
+ANLAVRGKLLDQIAEDQVEPAIALRPDLISVCAGGNDILRGADPDEIAARLDAVVERLAS
+AGATVLLFNATDVKGTPVIGRIRGTVAIYNENVRTIALRHDALVPDMWSLKDLARREMWA
+EDRLHFSALGHHTIAAMVLDTLGVEHGLEHLRLSPPAPRTWRAARASDAAWVRTHLAPWV
+VRRLRGVSSGDGVTAKRPVPEPLFGAPMPQGSDHTEPLDIVEP
+>KD337_NAFOICDF_02264
+METMSP--------------------------------LTN--TADSEPPHAEGHASA--
+------EPAHPWRRYVAVGDSFTEGIGDPDPERPGYHRGWADHLAEELARLTPAGEEFSY
+ASLAVRGKLMDQIRADQIDPAVELAPDLVSICAGGNDILRRADPDETALHLDDAVGRLAE
+TGATVLLFNVPDIKETPVLARIRGRVAIYNENIRTVAARHHAVVADMWSLKDLARPEMWA
+PDRLHFSPVGHHTIAAMALDTLGVEHELEPLSPKRAAPRTWREARVDDARWARTHLVPWV
+GRRLRGVSSGDGMQPKRPLPAPLFGADMPHGSDYTEH---AAD
+>SA211_MHAAABBN_00288
+--------------------------------------MGN--PSSSQPPHASDATPVDD
+------PAAHPWRRYVAIGDSFSEGIGDPDPDRPGYHRGWADRLAEELSRLTPPGEDLAY
+ANLAVRGKLLDQIAEDQVEPALALRPDLISVCAGGNDILRGADPDEIAVRLDAVVERLAS
+DGATVLLFNATDVKGTPVIGRIRGTVAIYNENVRTIALRHDALVPDMWSLKDLARREMWA
+EDRLHFSALGHHTIAAMVLDTLGVEHGLEHLRLSPPAPRTWREARASDAAWVRTHLAPWV
+ARRIRGVSSGDGVTAKRPVPEPLFGAPMPQGSDHTESLNVVEP
+>TT9_LFPAFLNI_00566
+--------------------------------------MGN--PSSSQPPHASDATPVDD
+------PAAHPWRRYVAIGDSFSEGIGDPDPERPGYHRGWADRLAEELSRLTPPGEDLAY
+ANLAVRGKLLDQIAEDQVEPALALRPDLISVCAGGNDILRGADPDEIAVRLDAVVERLAS
+DGATVLLFNATDVKGTPVIGRIRGTVAIYNENVRTIALRHDALVPDMWSLKDLARREMWA
+EDRLHFSALGHHTIAAMVLDTLGVEHGLEHLRLSPPAPRTWREARASDAAWVRTHLAPWV
+VRRLRGVSSGDGVTAKRPVPEPLFGAPMPQGSDHTEPLDVVEP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001599.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001599.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b28c2d25ea03b2afd3f041acf67e2f2706ea6d2b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001599.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02381
+MT----------------------------ATVSRPPRAA--LPEGGRHRLRIGELRTET
+GGVLPDVELAYETWGELDADGSNAVLVLHALTGDSHVAAHAADPTPGWWDALVGPGRAVD
+TDRWFVVAPNMVGGCHGSTGPSSPAADGRPWGSRFPFLTLRDAVAAERRLADHLGVGAWQ
+AVIGGSMGGARALEWAATHPERVAGVGVLAATARSSADQIAWGQAQTAAIRLDPGFLGGD
+YYEGAGPAAGLGIARRIAHTTYRTAGELERRFGRSPQGAEDPFGAVVGVPGGRGRYAVES
+YLDHQATKLTGRFDANSYLLLTEALLGHDVGRGRGGVEAALAGYRGRAFVAAVDSDRLYL
+PAEAQALAAVLPARPPVHTIVSPIGHDGFLTEYGQVADALRDSLAL
+>KBS0714_MOLHKGIG_00562
+MT----------------------------AVATRPSRTA--LPRGGRHRLRVGELRTET
+GGLLPDVELTYETWGTLAADGSNAVLVLHALTGDAHVAAHEEDPTPGWWDALVGPGRAVD
+TDRWFVVAPAMIGGCHGSTGPSTPAPDGRPWGSRFPFLTLRDAVEAERRLADHLGIGAWR
+AVIGGSMGGARALEWAATHPARVAGVGVLAATAASSADQIAWGQAQTAAIRLDPDFQGGD
+YYPGPGPVAGLGIARRIAHTTYRTAGELGQRFGREPQGVEDPFGAVVGVPGGRGRYAVES
+YLDHQAAKLADRFDANSYLVVTEALMGHDVGRGRGGVAAALADYRGRAFVAAVDSDRLYL
+PAESEALAAALPARPPVHTIASPIGHDGFLTEYGQVADTLKRTLAL
+>KD337_NAFOICDF_02265
+MTAIDPRILPGHAAHRPHQGPQGEAAPSARSAAPHDARPADRLPAGEFRTLSVGPLELEA
+GGRLPGVELAFETWGTLAEDGANAVLVLHALTGDSHVASHRRDESAGWWEELIGPGLAVD
+TDRWFVVAPNMLGGCDGSTGPSSPAPDGAPWGGRFPFVTIRDAVAAERRLLDALGVTALQ
+AVIGGSMGGARAIEWAVSHPDLVRGVAVLASTASSSAEQIAWAQAQTHAIRLDPEWRGGD
+YHPGPGPVTGLGIARRIAHTTYRSAAELQHRFGREPQGAEDPLGTASG--ERVGRYQVES
+YLDHQASKLVGRFDAGSYVALTEALMSHDVGRGRGGVEAALASYPGRAFVAAVDSDRLYF
+PAESERLASLLPGEVPVHTIHSPIGHDGFLTEYGQIADELRRTLEL
+>SA211_MHAAABBN_00287
+MT----------------------------AVATRPSRTA--LPRGGRHRLRVGELRTET
+GGLLPDVELAYETWGTLAADGANAVLVLHALTGDAHVAAHEEDPTPGWWDALVGPGRAVD
+TDRWFVVAPAMIGGCHGSTGPSTPAPDGRPWGSRFPFLTLRDAVEAERRLADHLGIGAWR
+AVIGGSMGGARALEWAATHPARVAGVGVLAATAASSADQIAWGQAQTAAIRLDPDFQGGD
+YYPGPGPVAGLGIARRIAHTTYRTAGELGQRFGREPQGVEDPFGAVVGVPGGRGRYAVES
+YLDHQAAKLTDRFDANSYLVVTEALMGHDVGRGRGGVAAALADYRGRAFVAAVDSDRLYL
+PAESEALAAALPARPPVHTITSPIGHDGFLTEYGQVADTLKRTLAL
+>TT9_LFPAFLNI_00565
+MT----------------------------AVATRPSRTA--LPRGGRHRLRVGELRTET
+GGLLPDVELTYETWGTLAADGSNAVLVLHALTGDAHVAAHEEDPTPGWWDALVGPGRAVD
+TDRWFVVAPAMIGGCHGSTGPSTPAPDGRPWGSRFPFLTLRDAVEAERRLADHLGIGAWR
+AVIGGSMGGARALEWAATHPARVAGVGVLAATAASSADQIAWGQAQTAAIRLDPDFQGGD
+YYPGPGPVAGLGIARRIAHTTYRTAGELGQRFGREPQGVEDPFGAVVGVPGGRGRYAVES
+YLDHQAAKLTDRFDANSYLVVTEALMGHDVGRGRGGVAAALADYRGRAFVAAVDSDRLYL
+PAESEALAAALPARPPVHTIASPIGHDGFLTEYGQVADTLKRALAL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001601.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001601.fa
new file mode 100644
index 0000000000000000000000000000000000000000..51681431a52aab37881420c99c80529c6cc85e8d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001601.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02383
+-----MDHVSYAAGPEGLDATVARIAEALGVERIKGGIHPRFGTQNALFPMAGGQYLEVV
+EALDHPASLSAPFGQLVRSRSEQGGGWMSWAVSTTDIGRFERRLGREAVPGNRRFPDGRE
+LSWRQIGIKGTIADPQLPFIMRWADGQEDMHPSQAAEAQASIERLSIAGSPDRLAEWLGG
+EGEDAHVEDLNVEYVAPSGTPGIVSVTFRTPRGDVTL
+>KBS0714_MOLHKGIG_00560
+-----MDHVSYAAGPEGLDATVARIAETLGIERIKGGVHPRFGTQNALFPMAGRQYLEVV
+EALDHPASLSAPFGQLVRARTEQGGGWMSWAVATTDIGRFERRLGREAVPGNRRFPDGRE
+LSWRQIGVKGTLADPQLPFILRWADGQEDMHPSQAAEPQATIERLNIAGSPERLAEWL-G
+DDEDGQVQDVNIEYVAPSGTPGIVSVTFRTPKGEVTL
+>KD337_NAFOICDF_02267
+MNTCRMDHVSYAAGPEGLDATVARIAERLGVERVKGGIHPRFGTQNALFPMTGNQYLEVV
+EALDHPASLSAPFGQLVRTRSEQGGGWMSWAVTTNDIGRFERRLGREAVPGNRRFPDGRE
+LSWRQIGVKGTLADPQLPFILRWADGQEDMHPSQAAPAQASIARLSIAGSPDRLREWLGG
+T-EDDEVADVSVDYVAPSGTPGIVSVTFSTPKGEVTL
+>SA211_MHAAABBN_00285
+-----MDHVSYAAGPEGLDATVARIAETLGIERIKGGVHPRFGTQNALFPMTEGQYLEVV
+EALDHPASLSAPFGQLVRARTEQGGGWMSWAVATTDIGRFERRLGREAVPGNRRFPDGRE
+LSWRQIGVKGTLADPQLPFILRWADGQEDMHPSQAAEPQATIERLNIAGSPERLAEWL-G
+DDEDGQVQDVNIEYVAPSGTPGIVSVTFRTPKGEVTL
+>TT9_LFPAFLNI_00563
+-----MDHVSYAAGPEGLDATVARIAETLGIERIKGGVHPRFGTQNALFPMTEGQYLEVV
+EALDHPASLSAPFGQLVRARTEQGGGWMSWAVATPDIGRFERRLGREAVPGNRRFPDGRE
+LSWRQIGIKGTLADPQLPYILRWADGQEDMHPSQAAEPQATIEHLNIAGSPERLAEWLGG
+EDEDGQVQDVNIEYVAPSGTPGIVSVTFRTPKGEITL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001602.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001602.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5b9b3c34c50330b35cda87e05c127bd6f8737b86
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001602.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02384
+MSLPVPPALA------SPVPTALPAPSARTVRWEIAIVLGLSLGRSAVYAVVQLIDKATQ
+APLGDQTTVLNPTVDDRWAFDLTYQLLGIAFALVPVLLVLHLMHLRGRNPFRTLGLDLRR
+PGRDLAWGVGLFAVIGLGTLGVYAAGRALGLTTAIVANAMDESWYQIPVLLLSALRHSLL
+EEVIVGAWLVDRIGYLQRLKAAGLDRDPVPAVPAAPARRTGAPSSSWTTPEGLFLPTCVA
+TALLALALLRGAYHLYQGVGPGIGNALMGVVFVLVFLRVRRVMPLVVAHFLLNAVGFVGY
+PLLARAGLLG
+>KBS0714_MOLHKGIG_00559
+MPATPRTSRT---PAVRPAP-ALPAPSARTVRWEIAIVLGLSLGKSAVYAIVQLIDKATQ
+APLGEQTTVLNPALADRWAFDLTYQLLGIGFALVPVALVLHLMHLRGRNPFRVLGLDLRR
+PGRDLAWGLGLFAAIGLGTLGVYAAGRALGITTAIVGSALGESWYQVPVLLLSALRHGLL
+EEVIVGAWLVDRLGYLQRLRAAGLARDPAPAVP-----------SSWVSAEGLYLPTRAA
+VVVLALALLRGAYHLYQGIGPGVGNALMGVVFALVFLRVRRVMPLVIAHTLLDAVGFVGY
+PLLARAGLLG
+>KD337_NAFOICDF_02268
+MTATARPEHA-AGRRGPGAP-ALPAPSARTVRWEIAIVLGLSLGRSAVYAVVQLIDQATR
+APLGDQTTVLNPTVADRWAFDLTYQLLGIAFSLVPVLLVLHLLWLRGRHPFRVLGLDLRR
+PGRDLAWGLGLFTVIGVGTLGVYAAGRALGITTAIVANAMDESWYQVPVLLLSAARHALL
+EEVIVGAWLIDRLGYLQRLREAGL-----------------GASSSWAGTEGLFLPLRTW
+PVVLSLALLRGAYHLYQGVGPGIGNALMGAVFVLVFLRVRRVMPLVLAHFLLDAVGFVGY
+PLLARAGLLG
+>SA211_MHAAABBN_00284
+MPATPRTSRTPAGPAVRPAP-ALPAPSARTVRWEIAIVLGLSLGKSAVYAIVQLIDKATQ
+APLGEQTTVLNPALADRWAFDLTYQLLGIGFALVPVALVLHLMHLRGRNPFRVLGLDLRR
+PGRDLAWGLGLFAAIGLGTLGVYAAGRALGITTAIVGSALGESWYQVPVLLLSALRHGLL
+EEVIVGAWLVDRLGYLQRLRAAGLAHDPAPAVP-----------SSWVSAEGLYLPTRAA
+VVVFALALLRGAYHLYQGIGPGVGNALMGVVFALVFLRVRRVMPLVIAHTLLDAVGFVGY
+PLLARAGLLG
+>TT9_LFPAFLNI_00562
+MPATPRTSRT---PAVRPAP-ALPAPSARTVRWEIAIVLGLSLGKSAVYAIVQLIDKATQ
+APLGEQTTVLNPALADRWAFDLTYQLLGIGFSLVPVALVLHLMHLRGRDPFRVLGLDLRR
+PGRDVAWGLGLFAAIGLGTLGVYAAGRALGITTAIVGSALGESWYQVPVLLLSALRHGLL
+EEVIVGAWLVDRLGYLQRLRAAGLARDPAPAVP-----------SSWVSAEGLYLPTRVA
+VVVLALALLRGAYHLYQGIGPGVGNALMGVVFALVFLRVRRVMPLVIAHALLDAVGFVGY
+PLLARAGLLG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001603.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001603.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7abef258d50604d3b3e0b2a890bd34e32c81dec4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001603.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02385
+MASDPVDSELELVHRALGRLRPHVSPADARALHEADWSAGTVEEGGQFNRVLVCAGAGVL
+RMTRAHEVGAAPAARWSPERDPARQLGRRMALLDGLDAALAEQGVAWTVPVALSDPVPAG
+TGAAVLQRYLPGGPHPPHEGDPAVLRRLLDEIAAVDVADPRIAPHLGRPFSFRGPWTAQR
+AEHVAGIPGRLAPRLGAWPGD------------DVDARTGADAWADAVARVTRAVTAWTE
+EPPVPPSLVHGDLAGHNMRWR-----AMPAADDAPGEVRWELAGVLDWDLACAWDPALNV
+AYLSLWHGEDQVERLAVDAGEAARARVWLGAMALETLDDAAARDELVGGLPNGSWRRLLR
+KALPRVARALTAL-G
+>KBS0714_MOLHKGIG_00558
+MVSPPAPSELELVHRALQHLRPGLDPALARRLRTADWAAASVEEGGQFHRVLVLEDVGVL
+RMTRAHEVGAAPAARWAPERDPAAHLPRRLALLDGLASALAERDVSWAVPVALSDPVSAG
+PGAAVLQRFLPGGPYPPHEGDPDVLRGVLDDLAAVDVTDPRIAPHLGRPFAFRGPWTPAR
+ARHVAALPGAVAARLGAWEGH------------DVDARLGAEAWPDAVAALTDAVTTWTA
+APPVPPSLVHGDLAGHNMRWR-----AVPEDEDPRAPLRWALAGVLDWDLACAWGPALNV
+AYLALWHGEQKVPDLARDAAEARRARVWLGAMAMETLDDAAARDAIVGGLAAGSWRRLLR
+KTLPRVARALTALDG
+>KD337_NAFOICDF_02269
+MASDPARSELDLVAAALQRLRPGLDDGVAARLRGADWSAGRVEEGGQFHRVLVLEDVGVL
+RMTRVHEAGAAPAARWTPERDPAVHLPRRLALLDGLAAVLAEAGVRWSLPTALSAVVEDG
+PGAAVLQRYVPGFPHPPHEGDPAVLRGVLADLAAVDVADPRVAPHLGRPFTFRGPWTPER
+AAHVAGLPARLAPRLGAWPGDALGHAGDETAAGEAAVRLRADAWGESVTALTGVVSAWTR
+EPPVPPALVHGDLAGHNMRWRVVPAAATPDAEVPDAPVRWELAGVLDWDLACAWDPALNV
+AYLGLWHGEDLVEAIAADPAEARRARVWLGAMALETLDDAGARDVLVGGLAESSWRRLLR
+KTLPRVGRALAAAAA
+>SA211_MHAAABBN_00283
+MVSPPAPSELELVHRALQHLRPGLDPALARRLRTADWAAASVEEGGQFHRVLVLEDVGVL
+RMTRAHEVGAAPAARWAPERDPAAHLPRRLALLDGLAAALAERRVPWTVPIALSDPVPAG
+PGAAVLQRFLPGGPHPPHEGDPAVLRGVLDDLAAVDVTDPRIAPHLGRPFAFRGPWTPER
+ARHVAALPGAVAARLGAWEGH------------DVDARLGAEAWPDAVAALADAVTTWTA
+APPVPPSLVHGDLAGHNMRWR-----AVPEDEDPRAPLRWALAGVLDWDLACAWDPALNV
+AYLALWHGEEKVPDLARDAAEARRARVWLGAMAMETLDDAAARDAIVGGLAAGSWRRLLR
+KTLPRVARALTALDG
+>TT9_LFPAFLNI_00561
+MVSPPAPSELELVHRALQHLRPGLDPALARRLRTADWAAASVEEGGQFHRVLVLEDVGVL
+RMTRAHEVGAAPAARWAPERDPAAHLPRRLALLDGLAAALAERRVPWTVPIALSDPVPAG
+PGAAVLQRFLPGGPHPPHEGDPAVLRGVLDDLAAVDVTDPRIAPHLGRPFAFRGPWTPER
+ARHVAALPGAVAARLGAWEGH------------DVDARLGAEAWPDAVAAVTDAVTAWTA
+APPVPPSLVHGDLAGHNMRWR-----AVPEDEDPRAPLRWALAGVLDWDFACAWDPALNV
+AYLALWHGEEKVPDLARDAAEARRARVWLGAMAMETLDDAAARDAIVGGLAAGSWRRLLR
+KTLPRVARALTALDG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001604.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001604.fa
new file mode 100644
index 0000000000000000000000000000000000000000..43027d100fcb665da04733b2f97298d9886d281b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001604.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02388
+MSHAEQTMDFAEAMERFDPVLGFEVHVELNTATKIFSSAPNAFGDEPNTNVTPLDLGLPGTLPVLNREVVEYAVRLGVAL
+DAQVAETCRFARKNYFYPDTPKNFQTSQYDEPIVFDGHLDVELEDGEVFRVEIERAHLEDDAGKLTHVGGSGRIQGASNS
+LVDYNRAGVPLIEIVTKPIVGAGARAPELARAYVTAIRDIVKAIDISDARMERGNVRCDANVSLMPKGATEFGTRTETKN
+VNSTRAVQHAVTHEIQRQAALLAAGGTVTQETRHWHEDTRTTTSGRPKSDADDYRYFPEPDLVPVHVDAAWVERVRAEMP
+ELPAVRNKRLKAEWGYTDEEFRDVVNAGVLDEIVATVEAGASPAAARKWWMGEIARLANVRETAVAELGVTPAHVVEVEE
+LIAAKTINDKIAKQVLGLVADGEGTPKEIVEAKGLAVVSDDGALTEAVDAAIAANPDVAEKIRGGKMAAVGALIGPVMKA
+TRGQADAGRVREIVLERLGVS
+>KBS0714_MOLHKGIG_00557
+MSHAEQTMDFAEAMERFDPVLGFEVHVELNTATKIFSSAPNAFGDEPNTNVTPLDLGLPGTLPVLNRKVVEYAIRLGVAL
+DAQVAETCRFARKNYFYPDTPKNFQTSQYDEPIVFDGHLDVELEDGEVFRVEIERAHLEDDAGKLTHVGGSGRIQGASAS
+LVDYNRAGVPLIEIVTKPIVGAGARAPELARAYVTAIRDIVQAIDISDARMERGNVRCDANVSLMPKGATEFGTRTETKN
+VNSTRAVQHAVTHEIQRQAAVLAAGGTVTQETRHWHEDTRSTTSGRPKSDADDYRYFPEPDLVPVHVDAAWVERVRAAMP
+ELPAVRNKRLKAEWGFSDEEFRDVVNAGVLDEIVATVEAGASAAAARKWWMGEIARLANVREVAVAELGITPAHVVEVEE
+LIAAKTINDKIAKQVLGLVADGEGAPKEVVAAKGLAVVSDDGALTEAVDAAIAANPDVAEKIKGGKMAAVGALIGPVMKA
+TRGQADAGRVREIVLERLGVS
+>KD337_NAFOICDF_02271
+MSTAE-LMDFQEAMDRFDPVLGFEVHVELNTKSKIFSTGANAFGDEPNTNVTPLDLGLPGTLPVLNREAVESAIALGLAL
+DAQIAPSCRFARKNYFYPDTPKNFQTSQYDEPIVFDGHLDVELEDGTVFRVEIERAHLEDDAGKLTHQGGSGRIQGASAS
+LVDYNRAGVPLIEIVTRPIVGAGDRAPEIARAYVTALRDIVKAIGISDARMEHGNVRCDANVSLMEKGASAFGTRTETKN
+VGSTRAVQHAVTHEIQRQAAILAAGGTITQETRHWHEDTRTTTSGRPKSDADDYRYFPEPDLLPVVVDEAWIERVRAGMP
+ELPAVRNKRLKGEWGFSDEEFRDVVNAGVADQIAQTVEAGASPAAARKWWMGEIARLANLREVEAAELGVTPAHVVEIEE
+LIAAKTINDKIAKQVLGLVADGEGAPKQIVAAQGLAVVSDDGALTEAVDAAIAANPDVAEKIKGGKMQAVGALIGPVMKA
+TRGQADAGRVREIVLERLGVA
+>SA211_MHAAABBN_00282
+MSHAEQTMDFAEAMERFDPVLGFEVHVELNTATKIFSSAPNAFGDEPNTNVTPLDLGLPGTLPVLNRKVVEYAIRLGVAL
+DAQVAETCRFARKNYFYPDTPKNFQTSQYDEPIVFDGHLDVELEDGEVFRVEIERAHLEDDAGKLTHVGGSGRIQGASAS
+LVDYNRAGVPLIEIVTKPIVGAGARAPELARAYVTAIRDIVQAIDISDARMERGNVRCDANVSLMPKGATEFGTRTETKN
+VNSTRAVQHAVTHEIQRQAAVLAAGGTVTQETRHWHEDTRSTTSGRPKSDADDYRYFPEPDLVPVHVDAAWVERVRAAMP
+ELPAVRNKRLKAEWGFSDEEFRDVVNAGVLDEIVATVEAGASAAAARKWWMGEIARLANVREVAVAELGITPAHVVEIEE
+LIAAKTINDKIAKQVLGLVADGEGAPKEVVTAKGLAVVSDDGALTEAVDAAIAANPDVAEKIKGGKMAAVGALIGPVMKA
+TRGQADAGRVREIVLERLGVS
+>TT9_LFPAFLNI_00560
+MSHAEQTMDFAEAMERFDPVLGFEVHVELNTATKIFSSAPNAFGDEPNTNVTPLDLGLPGTLPVLNRKVVEYAIRLGVAL
+DAQVAETCRFARKNYFYPDTPKNFQTSQYDEPIVFDGHLDVELEDGEVFRVEIERAHLEDDAGKLTHVGGSGRIQGASAS
+LVDYNRAGVPLIEIVTKPIVGAGARAPELARAYVTAIRDIVQAIDISDARMERGNVRCDANVSLMPKGATEFGTRTETKN
+VNSTRAVQHAVTHEIQRQAAVLAAGGTVTQETRHWHEDTRSTTSGRPKSDADDYRYFPEPDLVPVHVDAAWVERVRAAMP
+ELPAVRNKRLKAEWGFSDEEFRDVVNAGVLDEIVATVEAGASAAAARKWWMGEIARLANVREVAVAELGITPAHVVEVEE
+LIAAKTINDKIAKQVLGLVADGEGAPKEVVAAKGLAVVSDDGALTEAVDAAIAANPDVAEKIKGGKMAAVGALIGPVMKA
+TRGQADAGRVREIVLERLGVS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001609.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001609.fa
new file mode 100644
index 0000000000000000000000000000000000000000..117f8c203a369f948f1f00827aec161aaf55d6f3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001609.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02396
+M------EPSAETP---AAAPRPEAAGATHVGAVRELNEDAWTLVGDPLVLAAVADGMGG
+HEAGEVASAAAIEVLRRRGPEVLAPGVAHTPEELGHLVHEADAAVVAAGGGRSGTTLTVL
+ACIDTAANRWAVANVGDSRIYLRPAGAPVLQQLTVDHSAVQMLVDAGELTPAEARVHPRR
+NVITRALGSSEPLTVDVAEIPVASGDRLLLCSDGLTGELLDEEIRALIDDADELEDALVK
+LVEAALWRGGRDNVTAVLVRIP
+>KBS0714_MOLHKGIG_00550
+M------DPRPETP----SAPRPQAAGATHVGAVRDLNEDAWTLVGEPLVLAAVADGMGG
+HEAGEVASAAAIETLRRRAPEVLAPGTAHTPQELGHLIHEADAAVVEAGLGRSGTTLTVL
+ACLDTERGRWAVANVGDSRVYLRPVGSPVLQQLTVDHSAVQMLVDAGELTPAEARVHPRR
+NVITRALGSREALTVDVAEVPLASGDLVLLCSDGLTGELLDEEIRALIDDADTLEDALEK
+LIGAALWRGGRDNITAVLVRIP
+>KD337_NAFOICDF_02280
+MSEPHAADAAPAEPGAWASVPRPEAVAVTHVGAVRELNEDSWAVVGDPLLLAAVADGMGG
+HEAGEVASAAAVAELHRRAPSVLAPGVAHTPQELGALVHEANAAVLAAGGGRAGTTLTVL
+ACLDTEVGRWAVANVGDSRIYLRPVGAGVLQQVTVDHSAVQLMVDAGELTPAEARVHPRR
+NVITRALGSTQALTVDVMELDVAPGDRFLLCSDGLTGELLDDEILAIMDDAATLDEAAER
+LVEAALWRGGRDNITAVLVRIP
+>SA211_MHAAABBN_00275
+M------DPRPETP----SAPRPQAAGATHVGAVRDLNEDAWTLVGEPLVLAAVADGMGG
+HEAGEVASAAAIETLRRRAPEVLAPGTAHTPQELGHLIHEADAAVVEAGLGRSGTTLTVL
+ACLDTERGRWAVANVGDSRVYLRPVGSPVLQQLTVDHSAVQMLVDAGELTPAEARVHPRR
+NVITRALGSREALTVDVAEVPLASGDLVLLCSDGLTGELLDEEIRALIDDADTLEDALEK
+LIGAALWRGGRDNITAVLVRIP
+>TT9_LFPAFLNI_00553
+M------DPRPETP----SAPRPQAAGATHVGAVRDLNEDAWTLVGEPLVLAAVADGMGG
+HEAGEVASAAAIETLRRRAPEVLAPGTAHTPQELGHLIHEADAAVVEAGLGRSGTTLTVL
+ACLDTERGRWAVANVGDSRVYLRPVGSPVLQQLTVDHSAVQMLVDAGELTPAEARVHPRR
+NVITRALGSREALTVDVAEVPLASGDLVLLCSDGLTGELLDEEIRALIDDADTLEDALEK
+LIGAALWRGGRDNITAVLVRIP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001610.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001610.fa
new file mode 100644
index 0000000000000000000000000000000000000000..32075a8e8970f7bf2faa62516a06c13b9a1e7cbb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001610.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02397
+MSRA----ETPETAPLPIIAPDGSGPAEAPRRKDPHDERRADRHEDRRGEAAADRLEEVD
+APPPGAGWTTAMRTLDAGLVVGPRAYTAREVAQRMGVSTASARKIWRALGYPTSPEGHKA
+FTEADVEAFESVLELVRSGALNEDAAISLARSIGQMTDRMVVWQIEALVEDKIVSEGLTD
+PEARRAAVDLLPEIVTPLERAMQIVYRRQLNRAVKRLTVRVEAGLAASEEGRDGSESDSP
+LPLARAVGFADMVSYTTLSRTMDDRTLARMVQRFETLSAEIISAGGGWLVKTIGDEVMFN
+AETPETGAAIALALAEAIAADDELPSARVALTWGRVLSRMGDIYGPTVNLAARLTSLADP
+GTVLVDAMTAAALSRDERFVLVPQPPRIVRGVGEVRPSLLLNGSAQTLLAD
+>KBS0714_MOLHKGIG_00549
+MSRP----ETPDTAPLPIVPPA-------------EDETARD-------------VEERS
+AEP--AGWTSAMRTLDAGLVVGPRAYTSREVAQRLGVSMASARKIWRALGYPTSPEGHKA
+FTEADIEAFESVLTLVRSGTLNEDTAISLARSIGQMTDRMVVWQIEALVEDKIASEGLTD
+PEARRAVVDMLPDMVGPLEKSMRIVYRRQLNRAVQRLTVRVEAGLAASAEGRDGSESDAP
+LPLARAVGFADMVSYTTLSRTMDDRTLARMVLRFESLAAETISAGGGWLVKTIGDEVMFN
+AETPEAGAAIALSLAETIAADEELPSARVALTWGRVLSRMGDIYGPTVNLAARLTSLADP
+GTVLVDAMTAAALSRDERFVLVPQPPRIVRGFGEVRPSLLLDGSAQTLLAD
+>KD337_NAFOICDF_02281
+MTRDTHHDAVPETAPLPVQAPAG------------AADPAVG-------------RRESD
+ALH--HGWTSAIRTLDAGLLDRPRSYSRREAAQRLGISSVSARKIWRALGYPTVKDEEKV
+FSAEDIDAFEQVLSLVRDGMLNEDTAISLARSVGQMTDRMVVWQIEALVEDQIAAEGKTD
+PEARRAAVEMLPGLVEPLEKVMRIVYRRQLTNAVQRLTVRVEAGLAASERGRDGSEDDAP
+LPLARAVGFADMVSYTTLSRTMGERTLARTVQRFESKAAEIIAAGGGWLVKTIGDEVLFN
+AETPEAGATIALALAEAMADDDQLPAARVSLAWGRVLSRLGDIYGPTVNLASRLTSLADP
+GTVLVDAMTAAALSRDERFVLVPQPPRIVRGFGEVRPSLLMNGAAQPLIAD
+>SA211_MHAAABBN_00274
+MSRP----ETPDTAPLPIVPPA-------------EDETARD-------------VEERS
+AQP--AGWTSAMRTLDAGLVVGPRAYTSREVAQRLGVSMASARKIWRALGYPTSPEGHKA
+FTEADIEAFESVLTLVRSGTLNEDTAISLARSIGQMTDRMVVWQIEALVEDKIASEDLTD
+PEARRAVVDMLPDMVGPLEKAMRIVYRRQLNRAVQRLTVRVEAGLAASAQGRDGSESDAP
+LPLARAVGFADMVSYTTLSRTMDDRTLARMVLRFESLAAETISAGGGWLVKTIGDEVMFN
+AETPEAGAAIALSLAETIAADEELPSARVALTWGRVLSRMGDIYGPTVNLAARLTSLADP
+GTVLVDAMTAAALSRDERFVLVPQPPRIVRGFGEVRPSLLLDGSAQTLLAD
+>TT9_LFPAFLNI_00552
+MSRP----ETPDTAPLPIVPSA-------------EDETARD-------------VEERS
+AQP--AGWTSAMRTLDAGLVVGPRAYTSREVARRLGVSMGSARKIWRALGYPTSPEGHKA
+FTEADIEAFESVLTLVRSGTLNEDTAISLARSIGQMTDRMVVWQIEALVEDKIASEDLTD
+PEARRAVVDMLPDMVGPLEKAMRIVYRRQLNRAVQRLTVRVEAGLAASAQGRDGSESDAP
+LPLARAVGFADMVSYTTLSRTMDDRTLARMVLRFESLAAETISAGGGWLVKTIGDEVMFN
+AETPEAGAAIALSLAETIAADEELPSARVALTWGRVLSRMGDIYGPTVNLAARLTSLADP
+GTVLVDAMTAAALSRDERFVLVPQPPRIVRGFGEVRPSLLLDGSAQTLLAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001612.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001612.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8dd4bad776d14e80261e8ae778bfca256e8562aa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001612.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02401
+MSDPDLTTTAGRLADLHRRLEATAAPGGEGAVERQHARGKHTARERIDLLLDEGSFVELDALAVHRTTAFGMDAKHPAGD
+GLVSGFGTVDGRQVAVYSQDFTVFGGSLSERNGQKIVKVQEFAARNGCPVIGILDGGGARIQEGVASLAQFADIFRNNVL
+ASGMIPQISLIMGPSAGGAAYSPALTDVVVMVDQTSHMFITGPDVIKTVTGEDVDMETLGGARSHNSTSGTAHYMASSEE
+DAIAYVQELLELLPSNNLAEAPTFEAADPETTDEDLALDEIVPDSANQPYDMLEVIGAIVDEGHLLQLQELYAPNVITGL
+ARLDGMSVGVVANQPQQLAGTLDIAASEKAARFVRFCDAFNIPILTLVDVPGFLPGTDQEFNGIIRRGAKLIYAYAEATV
+PKLTVITRKAFGGAYIVMGSKKLGADLNLAWPSAQIGVMGAQGAVNILYRRDLKATQDAGGDVDARRAEIVADYEAELLN
+PYQAAELGYVDAVVPPHATRGALIRALRATLHKREARPAKKHGNMPL
+>KBS0714_MOLHKGIG_00546
+MTDPDLTTTAGRLADLHRRLEATAAPGGPDAVERQHARGKHTARERIDLLLDEGSFVELDALAVHRTTAFGMDAKHPAGD
+GLVSGFGTVDGRQVAVYSQDFTVFGGSLSERNGQKIVKVQEFAARNGCPVIGILDGGGARIQEGVASLAQFADIFRNNVL
+ASGMIPQISLIMGPSAGGAAYSPALTDVVVMVDQTSHMFITGPDVIKTVTGEDVDMETLGGARSHNATSGTAHYMASSEE
+DAIAYVQELLELLPSNNLAEAPTFEAADPEPTDEDLALDEIVPDSANQPYDMLEVIASIVDEGHLLQLQELYAPNVITGL
+ARLDGMSVGVVANQPMQFAGTLDIAASEKAARFVRFCDAFNIPIITLVDVPGFLPGTDQEFNGIIRRGAKLIYAYAEATV
+PKLTVITRKAFGGAYIVMGSKKLGADLNLAWPSAQIGVMGAQGAVNILYRRDLKATAEAGGDVDARRAEIVADYEAELLN
+PYQAAELGYVDAVVPPHATRGQLIRALRATLHKREARPAKKHGNMPL
+>KD337_NAFOICDF_02284
+MSAPELSTTAGRLADLHRRLEATAAPGGEAAVERQHSRGKHTARERIDLLLDEGSFVELDALATHRTTAFGMDAKHPAGD
+GVVSGFGTVDGRQVAVYSQDFTVFGGSLSERNGQKIVKVQEFAARNGCPVIGILDGGGARIQEGVASLAQFADIFRNNVM
+ASGMIPQISLIMGPSAGGAAYSPALTDVVVMVDQTSHMFITGPDVIKTVTGEDVDMETLGGARSHNSTTGTAHYMATSEE
+DAIAYVQDLLEYLPSNNLAEAPVFEAESLEETEQDLALDTIVPDSANQPYDMLEVIAALVDDGHLLQLQEMYAPNVITGL
+ARLDGMSVGVVANQPQQLAGTLDIAASEKASRFVRFCDAFNIPIITLVDVPGFLPGTDQEFNGIIRRGAKLIYAYAEATV
+PKLTVITRKAFGGAYIVMGSKKLGADLNLAWPSAQIGVMGPQGAVNILYRRELAAAEAAGEDVEARRAQIVADYEAELLN
+PYQAADLGYVDAVVPPRQTRAHLVRALRATFHKREARPAKKHGNMPL
+>SA211_MHAAABBN_00271
+MTDPDLTTTAGRLADLHRRLEATAAPGGPDAVERQHARGKHTARERIDLLLDEGSFVELDALAVHRTTAFGMDAKHPAGD
+GLVSGFGTVDGRQVAVYSQDFTVFGGSLSERNGQKIVKVQEFAARNGCPVIGILDGGGARIQEGVASLAQFADIFRNNVL
+ASGMIPQISLIMGPSAGGAAYSPALTDVVVMVDQTSHMFITGPDVIKTVTGEDVDMETLGGARSHNATSGTAHYMASSEE
+DAIAYVQELLELLPSNNLAEAPTFEAADPEPTDEDLALDEIVPDSANQPYDMLAVIASIVDEGHLLQLQELYAPNVITGL
+ARLDGMSVGVVANQPMQFAGTLDIAASEKAARFVRFCDAFNIPIITLVDVPGFLPGTDQEFNGIIRRGAKLIYAYAEATV
+PKLTVITRKAFGGAYIVMGSKKLGADLNLAWPSAQIGVMGAQGAVNILYRRDLKATAEAGGDVDARRAEIVADYEAELLN
+PYQAAELGYVDAVVPPHATRGQLIRALRATLHKREARPAKKHGNMPL
+>TT9_LFPAFLNI_00549
+MTDPDLTTTAGRLADLHRRLEATAAPGGPDAVERQHARGKHTARERIDLLLDEGSFVELDALAVHRTTAFGMDAKHPAGD
+GLVSGFGTVDGRQVAVYSQDFTVFGGSLSERNGQKIVKVQEFAARNGCPVIGILDGGGARIQEGVASLAQFADIFRNNVL
+ASGMIPQISLIMGPSAGGAAYSPALTDVVVMVDQTSHMFITGPDVIKTVTGEDVDMETLGGARSHNATSGTAHYMASSEE
+DAIAYVQELLELLPSNNLAEAPTFEAADPEPTDEDLALDEIVPDSANQPYDMLEVIASIVDEGHLLQLQELYAPNVITGL
+ARLDGMSVGVVANQPMQFAGTLDIAASEKAARFVRFCDAFNIPIITLVDVPGFLPGTDQEFNGIIRRGAKLIYAYAEATV
+PKLTVITRKAFGGAYIVMGSKKLGADLNLAWPSAQIGVMGAQGAVNILYRRDLKATAEAGGDVDARRAEIVADYEAELLN
+PYQAAELGYVDAVVPPHATRGQLIRALRATLHKREARPAKKHGNMPL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001614.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001614.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3513362d79c1c421f62da50cb320af21c06b5679
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001614.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02403
+MTQNTPVAADRGARTPSAIDALAERYVADVLALHPDEATTLGFPGHETEYADFSPAGTRADDELNARLLADLEALEPQDE
+TDRVTKAAMQERIGLEREIHATGRTELNNIASPAQGIRAVFDLMPTDTAEQWGHIAGRLENLPAALRGYTESLLASRDAG
+HVAAVRQVDIVIEQARAHGAAGGFFPGLVERAEATDVVDAALAERIRAGADAAAQAYRDFADTLQAELRPHAPEADGVGI
+ELYRLGSRAFLGAEIDLEETYRWGQEELARIIAAQEADAERIKPGATIEEARALLDADPERTLNGTAALQAWMQRLSDEA
+VQAMKAHFEIPAPMDRLECMIAPTQEGGIYYTGPSDDFSRPGRMWWSVPPGEDEFTTWAETTTVYHEGVPGHHLQIATAM
+MNRENLNLWRRSFCWTSGHGEGWALYAEKLMEELGFLDDPGDHLGMLDMQRMRAARVVFDIGYHCGFDAPESEGGGAWTP
+EKGYAFLEKHLRISEGQRRFEFTRYLGWPGQAPAYKVGQRIWEQIRTEHEEREGEGFDLKAFHTRALRLGGMGLDTLRAA
+LA
+>KBS0714_MOLHKGIG_00544
+MTQHTSEAAVDGARTPSAIDALAERYVTDLLALHPDTATELGFPGRETEYTDFSPAGARADDELNARLLEDLAALELQDE
+TDRVTKAAMQERIGLEREIHATGRTELNNIASPAQGIRAVFDLMPTDTAEQWGHIAGRLENLPAALRGYTESLLASRDAG
+HVAAVRQVDIVVEQARAHGAAGGFFPGLVERAEAADVVDDALAARIRSGADAAAQAYRDFADTLEAELRPHAPEADGVGI
+EYYRLASRDFLGAEIDLEETYRWGQEELARIIAAQQADAERIRPGATIEEARAILDADPERTLKGTEALRTWMQRLSDDA
+VEAMKEHFEIPAPMDRLECMIAPTQEGGIYYTGPSDDFSRPGRMWWSVPPGEDEFTTWAETTTVYHEGVPGHHLQIATAM
+MNRENLNLWRRSFCWTSGHGEGWALYAEKLMEELGFLDDPGDHLGMLDMQRMRAARVVFDIGYHCGFDAPESEGGGAWTP
+EKGYAFLSKHLRISEGQRRFEFTRYLGWPGQAPAYKVGQRIWEQIRAEHEQAEGADFDLKAFHTRALRLGGMGLDTLREA
+LA
+>KD337_NAFOICDF_02286
+MTQTTS--APEGARTPSAVDALAERHVAAYLALRPDEATSLGMPGHETEYPDLSPAGAAALDELNRTTLEELAGLEPADD
+VDRVTVAAMRERLGLEREIHATGRTELNNIASEAQGIRAIFDLMPTDTAEQWGHIAGRLENLPAALRGYAESLLASRDAG
+HVAAVRQVEIVVEQARAHGAEGGFFPGLVERAEAADVVDAALAERIRTGAAGAAAAYAEFADTLEAELRPHAPEADAVGI
+EHYRLASRVFLGAEIDLEETYRWGQEELDRIIAAQEADAERIKPGATIEEARAILDADPARTLTGTKALQEWMQRLSDEA
+VEAMKAHFEIPAPMDRLECMIAPTQEGGIYYTGPSDDFSRPGRMWWSVPAGEEEFTTWAETTTVYHEGVPGHHLQIATAM
+MNRGTLNLWRRNFAWTSGHGEGWALYAEKLMEEFGFLDDAGDHLGMLDMQRMRAARVVFDIGYHCGFEMPASEGGGEWTP
+EKGYAFLEKHLRISEGQRRFEFTRYLGWPGQAPAYKVGQRIWEQIRAEHEAREGADFDLKAFHTRALRVGGMGLDTLREA
+LA
+>SA211_MHAAABBN_00269
+MTQHTSEAAVDGARTPSAIDALAERYVTDLLALHPDTATELGFPGRETEYTDFSPAGARADDELNARLLEDLAALEPQDE
+TDRVTKAAMQERIGLEREIHATGRTELNNIASPAQSIRAVFDLMPTDTAEQWGHIAGRLENLPAALRGYTESLLASRDAG
+HVAAVRQVDIVVEQARAHGAAGGFFPGLAERAEAADVVDDALAARIRSGADTAAQAYRDFADMLEAELRPHAPEADGVGI
+DYYRLASRVFLGAEIDLEETYRWGQEELARIIAAQQADAERIRPGATIEEARAILDADPERTLKGTEALRTWMQRLSDDA
+VEAMKEHFEIPAPMDRLECMIAPTQEGGIYYTGPSDDFSRPGRMWWSVPPGEDEFTTWAETTTVYHEGVPGHHLQIATAM
+MNRENLNLWRRSFCWTSGHGEGWALYAEKLMEELGFLDDPGDHLGMLDMQRMRAARVVFDIGYHCGFDAPESEGGGAWTP
+EKGYAFLTKHLRISEGQRRFEFTRYLGWPGQAPAYKVGQRIWEQIRAEHEQAEGADFDLKAFHTRALRLGGMGLDTLREA
+LA
+>TT9_LFPAFLNI_00547
+MTQHTSEAAADGARTPSAIDALAERYVTDLLALHPDTATELGFPGRETEYTDFSPAGARADDELNARLLEDLAALEPQDE
+TDRVTKAAMQERIGLEREIHATGRTELNNIASPAQGIRAVFDLMPTDTAEQWGHIAGRLENLPAALRGYTESLLASRDAG
+HVAAVRQVDIVVEQARAHGGAGGFFPGLVERAEAADVVDDALAARIRSGADTAAQAYRDFAATLEAELRPHAPEADGVGI
+DYYRLASRVFLGAEIDLEETYRWGQEELARIIAAQQADAERIRPGATIEEARAILDADPERTLKGTEALRTWMQRLSDDA
+VEAMKEHFEIPAPMDRLECMIAPTQEGGIYYTGPSDDFSRPGRMWWSVPPGEDEFTTWAETTTVYHEGVPGHHLQIATAM
+MNRENLNLWRRSFCWTSGHGEGWALYAEKLMEELGFLDDPGDHLGMLDMQRMRAARVVFDIGYHCGFDAPESEGGGAWTP
+EKGYAFLAKHLMISEGQRRFEFTRYLGWPGQAPAYKVGQRIWEQIRAEHEQAEGADFDLKAFHTRALRLGGMGLDTLREA
+LA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001616.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001616.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6cab5a4b88959716753435c3da6af9595f191759
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001616.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02408
+MSRTT------TPADGTAAGLEAAAEVPRGRVITASLVGTSIEFYDFYVYATAAVSVFPL
+IFFPGDDQTTALLASFAVFGTAFVARPIGSVLFGHFGDIMGRKVTLIGSLLTMGIATFLI
+GLLPTAFQIGLWAPAMLVVLRFCQGLGLGGEWSGAALLATEYAAEGKRARAAMWPQLGAP
+IGFFLANGLFLALVIGFGHDSTNPDHDGAFLNWVWRLPFLLSIVMVAVGLYVRVKLEETP
+VFQRAIANDTRVKAPLGEVFKRNWWELILGTFIMYATYVLFYLMTTWILSYAIGKTENGM
+LGVPYAEFLVLQLIGILFFAAFVPASGWLADRFGRKPTLLTVSALMVLFGLSFGLWLSAE
+RMGTGAGVNVPLMLAFLAVGMALMGLTFGPMSAVLPELFPTNTRYTGSGISYNVSSILGA
+ALTPFLAAWLVKEYGVAYVGYYLAAASVITMIALALAPETRHTDLDGVTSARERRAASV
+>KBS0714_MOLHKGIG_00541
+MSHSTPPVNPGAPTDLTSDAVATAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSVFPL
+IFFAGGDDNTALLASMATFGAAFIARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIATFLI
+GLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQLGAP
+IGFLLANGLFLALVLGFDHDSTNPVLDGPFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALDRDQRVKAPLSEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPANGF
+LGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWLSPE
+NMGVGAELNGPLMVAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFIAAWLVQKFDVSYVGYYLAAASAITVIALVLSPETRHTDLDTVTSARERRAA-R
+>KD337_NAFOICDF_02290
+MSHTT----------ARSAEAPSVEDVPKSRVILASLVGTSIEFYDFYVYATAAVSVFPL
+IFFPGDDPTTALLASFAVFGTAFVARPIGSILFGHFGDRMGRKVTLIGSLLTMGIATFLI
+GLLPTAFQIGLWAPAMLVVLRFCQGLGLGGEWSGAALLATEYADHGKRARAAMWPQLGAP
+IGFLLANGLFLILVRAFGHDSTNPQLEGSFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALEDDTRVKAPLGEVFKRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKTQNGM
+LGVKYADFLVLQLVGILFFAAFVPVSGWLADRFGRKPTLLVVSGLMVVFGLSFGAWLSPA
+AMGQGDALNVPSMLAFLAVGMALMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFLAGWLVKEFGVATVGWYLAIASVITMAALALSPETRHADLHEVTSARERRAAAR
+>SA211_MHAAABBN_00265
+MSHSTPPVNPGAPTDLTSDAVATAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSVFPL
+IFFAGGDDNTALLASMATFGAAFIARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIATFLI
+GLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQLGAP
+IGFLLANGLFLALVLGFDHDSTNPVLDGPFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALDRDQRVKAPLGEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPANGF
+LGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWLSPE
+NMGVGAELNVPLMLAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFIAAWLVQKFDVAYVGYYLAAASAITVIALALSPETRHTDLDTVTSARERRAA-R
+>TT9_LFPAFLNI_00544
+MSHSTPPVNPGAPTDLTSDAVATAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSVFPL
+IFFAGGDDNTALLASMATFGAAFIARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIATFLI
+GLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQLGAP
+IGFLLANGLFLALVLGFDHDSTSPVLDGPFLTWVWRVPFLLSIVMVAVGLYVRVKLEETP
+VFQRALDRDQRVKAPLGEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPANGF
+LGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWLSPE
+NMGVGAELNVPLMLAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSILGA
+ALTPFIAAWLVQRFDVSYVGYYLAAASAITVIALALSPETRHADLDTVTSARERRAA-R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001617.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001617.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4416e4e588862c5acaa244105cd875620fe78f9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001617.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02409
+----------------------------MVAAKLGARVTLVERQGVGGAAVLTDVVPSKT
+LIATADSMRRVGLAEDLGVDLGDAEPRADMRQVDRRILDLAGEQSRDIRAALERRGVRVI
+DGVARVVGPNEVSVRTLQDAD--AEPEVITSDAILVAVGASPRELPTAVPDGERIFNWKQ
+LYAMTELPEHLIVVGSGVTGAEFASAYNRLGAKVTLVSSRDRVLPGEDADAAELLEKVFQ
+DNGLTVVARSRAEAVERTETGVRVELSGEGAADTPYVEGSHALVAVGGIPNTAGLGLEDV
+GVELTESGHVKVDGVSRTTVPSIYAAGDCTGNLALASVAAMQGRIAVAHLLGDALKPLRP
+HLLASNIFTSPEIATVGVTQAQVDSGQYQADVLRLDFATNPRAKMSGVQEGFVKIFARQG
+SGTVIGGVVVSPRASELIYALALAVTHKLHVDDLADTFTVYPSMSGSIAEAARRLHVRI
+>KBS0714_MOLHKGIG_00540
+MEPVSEENSTFIPSLTIIGGGPGGYEAAMVAAKLGARVTLVERQGLGGAAVLTDVVPSKT
+LIAAADSMRRVGASVDLGVDLGGADVHADMGRVGHRILNLAHEQSSDIRAGLERVGVRVI
+DGVGRVVGPHEVSVRALDDADAGAEPEIITSDAILVAVGASPRELPTAVPDGERIFNWKQ
+VYNLKELPEHLIVVGSGVTGAEFASAYNRLGAKVTLVSSRDRVLPGEDADAAELLEKVFE
+GNGLRVVSRSRAESVERTETGVRVHLSGEGAEDTPSIEGSHALVAVGGVPNTAGLGLDDV
+GVKLTGSGHVLVDGVSRTSVPSIYAAGDCTGKLALASVAAMQGRIAVAHLLGDALKPLRP
+HLLASNIFTSPEIATVGVTQAQVDSGQYQADVLRLDFHTNPRAKMSGAEEGFVKIFARQG
+SGTVIGGVVVSPRASELIYALALAVTHKLHVDDLADTFTVYPSMSGSIAEAARRLHVRI
+>KD337_NAFOICDF_02291
+MN-VTEENTTFLPSLTIIGGGPGGYEAALVAAKLGARVTVVERAGMGGSAVLTDVVPSKT
+LIATADSMRRVMAASGLGVDLGEAQPHADMHAVDRRILELAGQQSSDIHRALEKRGVRVV
+IGDAVVTGPHEVTVRR-RGIEEGEEPEVITSDAILVAVGASPRELPTARPDSERIFNWKQ
+VYALQDLPEHLIVVGSGVTGAEFASAYNQLGAAVTLVSSRDRVLPGEDPDAAELLEDVFA
+QNGLDVAGRCRAESVERTETGVRVHLSGEGADGRPYIDGSHCLLAVGGVPNTAGLGLEEV
+GVELTESGHVKVDGVSRTTVPSIYAAGDCTGQLALASVAAMQGRIAVAHLLGDALKPLRP
+HLLASNIFTSPEIATVGVTQAQVDSGQYQADVIRLDFATNPRAKMQGVSTGFVKIFARQG
+SGTVIGGVVVAPRASDLIYSLALAVTHKLHVDDLADTFTVYPSMSGSIAEAARRLHVRV
+>SA211_MHAAABBN_00264
+MEPVTEENSTFIPSLTIIGGGPGGYEAAMVAAKLGARVTLVERQGVGGAAVLTDVVPSKT
+LIAAADSMRRVGASVDLGVDLGGAEAHADMGRVGHRILNLAHEQSSDIRAGLERVGVRVI
+DGVGRVVGPHEVSVRALDDADAGAEPEIITSDAILVAVGASPRELPTAVPDGERIFNWKQ
+VYNLKELPEHLIVVGSGVTGAEFASAYNRLGAKVTLVSSRDRVLPGEDADAAELLEKVFE
+GNGLRVVSRSRAESVERTETGVRVHLSGEGAEDTPSIEGSHALVAVGGVPNTAGLGLDDV
+GVKLSGSGHVLVDGVSRTSVPSIYAAGDCTGTLALASVAAMQGRIAVAHLLGDALKPLRP
+HLLASNIFTSPEIATVGVTQAQVDSGQYQADVLRLDFHTNPRAKMSGAEEGFVKIFARQG
+SGTVIGGVVVSPRASELIYALALAVTHKLHVDDLADTFTVYPSMSGSIAEAARRLHVRI
+>TT9_LFPAFLNI_00543
+MEPVSEENSTFIPSLTIIGGGPGGYEAAMVAAKLGARVTLVERQGLGGAAVLTDVVPSKT
+LIAAADSMRRVGASVDLGVDLGGGDVHADMGRVGHRILNLAHEQSSDIRAGLERVGVRAI
+DGVGRVVGPHEVSVRALDDADAGAEPEIITSDAILVAVGASPRELPTAVPDGERIFNWKQ
+VYNLKELPEHLIVVGSGVTGAEFASAYNRLGAKVTLVSSRDRVLPGEDADAAELLEKVFE
+GNGLRVVSRSRAESVERTETGVRVHLSGEGAEDTPSIEGSHALVAVGGVPNTAGLGLDDV
+GVKLTGSGHVLVDGVSRTSVPSIYAAGDCTGKLALASVAAMQGRIAVAHLLGDALKPLRP
+HLLASNIFTSPEIATVGVTQAQVDSGQYQADVLRLDFHTNPRAKMSGAEEGFVKIFARQG
+SGTVIGGVVVSPRASELIYALALAVTHKLHVDDLADTFTVYPSMSGSIAEAARRLHVRI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001620.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001620.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0cc36ca87a96702a3e4bcec8179ccbcefc347dfe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001620.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02412
+M--TRTLSTAELAQYIDATALKTETSEADVRRLVAEARQAGVKSVCVNPRWVPLVSAELA
+GSDVLTCTVIGFPLGANASEVKTFEARQAIEAGAHEVDMVIDVAAARAGDRARLVEDVRA
+VAEAAHAAGPAGQGGALLKVIVETALLDDDAIVLACEAAVEAGADFVKTSTGFSTAGATV
+EHVALMRRTVGEHVGVKASGGVRTREDALAMIEAGATRIGASSALAILGTD
+>KBS0714_MOLHKGIG_00537
+M--TVSLTTAELAKYIDATALKADTSEADVRRLVAESREAGVKSVCINPVWVPLVAAELA
+GSDVLTCTVIGFPLGANASEVKAFEARQAIDAGADEVDMVLDVAAARAGDRDRLVADVRA
+VAEAAHADGPAGDGGALLKVIVETALLDDDAIVLACEAAVEAGADFVKTSTGFSTAGATV
+EHVALMRRTVGERIGVKASGGVRTRADALAMIEAGATRIGASSALAILGSD
+>KD337_NAFOICDF_02294
+MSETPQLTTAELAKHIDHTLLKPEASREDILRVVAEAREAGVKSVCVNPRWVREVRAGLE
+GSDVLTCTVIGFPLGASSSAVKAFETTQAIADGADEVDMVIDIAAARAGDRARLEEDVRA
+VVAAAHASGPAGRAGTLVKVIIETALLDDAAKVLACEAAVAAGADFVKTSTGFSTGGATV
+EDVALMRRTVGPEIGVKASGGVRSREDALAMITAGATRIGASSALAILGDD
+>SA211_MHAAABBN_00261
+M--TVSLTTAELAKYIDATALKADTSEADVRRLVAESREAGVKSVCINPVWVPLVAAELA
+DSDVLTCTVIGFPLGANTSEVKAFEARQAIDAGADEVDMVLDIAAARAGDRARLVADVRA
+VAEAAHADGPAGDGGALLKVIVETALLDDDAIVLACEAAVEAGADFVKTSTGFSTAGATV
+EHVALMRRTVGEDIGVKASGGVRTREDALAMIEAGATRIGASSALAILGSD
+>TT9_LFPAFLNI_00540
+M--TVSLTTAELAKYIDATALKADTSEADVRRLVAESREAGVKSVCINPVWVPLVAAELA
+GSDVLTCTVIGFPLGANASEVKAFEARQAIDAGADEVDMVLDVAAARAGDRDRLVADVRA
+VAEAAHADGPAGDGGALLKVIVETALLDDDAIVLACEAAVEAGADFVKTSTGFSTAGATV
+EHVALMRRTVGERIGVKASGGVRTRADALAMIEAGATRIGASSALAILGSD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001621.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001621.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fd3522674f5fb96b70496c3c39291fc503f307f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001621.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02414
+MDALRLVSIAAVVLGHAYLADLTFSRYLEIWRMPLFFFLTGYFWTRGRPVARDARGRFKA
+LMVPYLVWAVVMSAAALAWFGD---DPERLQRLMAAGWYGGADQEPPWWAFWFISVLFFA
+TVLRRFLERFPTAVAWGVGLAGLAWAYLVPESAIARTPLGVGLALPCLLFILSGEAFRRR
+VQPRIRRHRTLLGLALVGLGLAAVALGLEPHNIKFGGFGTPLLTPLVGVLMSAGMVLVFG
+AAVERILREFARRTGSGQALRRVITALVRTGTVVVLLHGWVLMWVMRQGVEDNLLKFVLA
+LGISWLVGLALLATPLSKPLTGARRRWFPLHRLRGEEPPHPPTSALPRVTTASERTHP
+>KBS0714_MOLHKGIG_00535
+MDALRLVSIAAVVLGHAYLTDLTFSRYLEIWRMPLFFFLTGYFWTRGRPWATDVWGRFRS
+LMVPYLVWAALMSVAAFAWFAD---DPDLLRRLMITGWYGGADQEPPWWAFWFISVLFFT
+TVLRRFLERFPSAVAWAVGLAGLAWAHLVPDSAIARTPLGVGLALPCLLFVLSGEMFRRR
+VQPHVRRHRTLIGVGLVLLGMVAVRLGLEPPNIKFGGFGTPVLTPAVGVLMSAGMVLVFG
+STVERLLRSFARRTGTGQALRRAITALVRTGTVVVLLHGWVLMWVTRHGVEDNAAKFALA
+LALSWLAGLALLATPLSKPFTGARRRWHPVHRLRHVEPPHPVTSALPRVTTASERTHP
+>KD337_NAFOICDF_02296
+MDALRLVSISAVVLGHAYLADLTFSPYLEIWRMPLFFFLTGYFWTRGRPWAADALSRFRS
+LMVPYLLWSVLMTLVVLSWSRRSQIDGVTLADLVSAGWYGGADQPPPWWAFWFISVLFFV
+ALLRRALERAPSWAGWAVALAGLAAAELVPESAIARTPLGIGLAAPCLFYVLAGEAFRRR
+VQPRIRRHRTLIGVALVAAGVGAVALGLPPHNIKWGGFGLFPWTPLTGIAMAAGMVLVFG
+AFVERRLRAFARDTGTGRAIRAGITALTRTGTVVVLLHGLVLMEAMRVGIEDNLMKFVVA
+LTVSWAVGLALLATPLARPLTGVPQQWFPFGREAGA----------------------
+>SA211_MHAAABBN_00259
+-----------MVLGHAYLTDLTFSRYLEIWRMPLFFFLTGYFWTRGRPWATDVWGRFRS
+LMVPYLVWAALMSVAAFAWFAD---DPDLLRRLMITGWYGGADQEPPWWAFWFISVLFFT
+TVLRRFLERFPSAVAWAVGLAGLAWAHLVPDSAIARTPLGVGLALPCLLFVLSGEMFRRR
+VQPHVRRHRTLIGVGLVLLGMVAVRLGLEPPNIKFGGFGTPVLTPAVGVLMSAGMVLVFG
+STVERLLRSFARRTGTGQALRRAITALVRTGTVVVLLHGWVLMWVTRHGVEDNAAKFALA
+LALSWLAGLALLATPLSKPFTGARRRWHPVHRLRHVEPPHPVTSALPRVTTASERTHP
+>TT9_LFPAFLNI_00538
+MDALRLVSIAAVVLGHAYLTDLTFSRYLEIWRMPLFFFLTGYFWTRGRPWATDVRGRFRS
+LMVPYLVWAALMSVAAFAWFAD---DPDLLRRLMITGWYGGADQEPPWWAFWFISVLFFT
+TVLRRFLERFPSAVAWAVGLAGLAWAHFVPDSAIARTPLGVGLALPCLLFVLSGETFRRR
+VQPHVRRHRTLIGVGLVLLGLVAVRLGLEPPNIKFGGFGTPVLTPAVGVLMSAGMVLVFG
+STVEGLLRSFARRTGTGQALRRAITALVRTGTVVVLLHGWVLMWVTRHGVEDNAAKFALA
+LALSWLAGLALLATPLSKPFTGARRRWHPVHRLRRVEPPHPVTSALPRVPTASERTHP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001623.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001623.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5ee94c8f697f719c68bade120bda2e828d0c1d64
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001623.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02419
+----MTETGTTDQRAAAQPALDLAVRVRLGHARIAYVMEEAELRGLHVKGYAAEPGVYRG
+RRSSSDVDLLVHPSDAAAAVELLASHGWAPVADFSEGSIFEHAATLWHDHLGYVDVHRLF
+PGLGTDAARTFDALWAERTTRVIAGRPVPVPGPVHQRLVVIVHAARDSHRGALDVRHIRD
+TSSPAEWDALRQEARRLHATAAWHVATGE-DADGMDAHDLALFEALQDDESGLDLFRTRW
+RTAHSARERARLVLHTLPVNRPHLQMRLGHAPTRADLWREQRSRATALARWAWTRGVRR-
+GR
+>KBS0714_MOLHKGIG_00533
+----MGER-ATRQRPAAPPSLDLEVRVRLAHARITHLLDRAGIRGLHLKGYATEPGVYPD
+HRRSSDVDLLVHPADATAVIELLRSHGWEPVATFSEGSIFQHAATLWHDQLGYVDVHRLF
+PGLGASPEAAFDALWSEHIHLVIAGRSVPVPSPRHQRLVVIVHAARDPFRGGLDVRHIRE
+SLPAESWAALREEAHRLDAGAAWHVATGE-AADGVDSRQLTLFAALHESQSGLELFRTRW
+RSAATARERAVLVARTIPVNRPHLQMRLGRPVTRADLWREQRARLGALAGWAWTKAVRR-
+DR
+>KD337_NAFOICDF_02301
+----MT---------AAPAP--LETRVRLAHARITHLMAAAGVRSLHIKGYAMGPGVYAG
+GRTSSDVDLLVHPADLSHALDALTSHGWRRIADFAEGSVFEHAATLWHDQLGYVDVHRRL
+PGLGRSPVDAFEALWGERTTTVVAGHAVPVPSLRHQRLVVLVHGARDAGRGRFDVDHLRH
+TLDAGQWAELRVQAQILGAGAAWSIATGETDVAGVDEREALLLSAVRGDESGIRLLATRW
+HAARGWRERLHLLVRTVPVNRAHLQMRLGRPPTTADVLREQASRGAALTRWAAGKAVPRV
+GR
+>SA211_MHAAABBN_00254
+----MGEH-ATGQRPAAPPSLDLEVRVRLAHARITHLLERAGIRGLHLKGYATEPGVYPD
+HRRSSDVDLLVPPADAAAVIALLGSHGWEPVATFSQGSIFQHAATLWHDQLGYVDVHRLF
+PGLGASPEAAFDALWSEHIHLVIAGRSVPVPSPRHQRLVVIVHAARDPFRGGLDVRHIRE
+SLPAESWAALREEARRLDAGAAWHVATGE-AADGVDTRQLTLFAALHESQSGLELFRTRW
+RSAATVRERAALVARTIPVNRPHLQMRLGRPVTRADLWREQRARLGALAGWAWTKAVRR-
+DR
+>TT9_LFPAFLNI_00533
+MLAAMGER-ATGQRPAAPPSLDLEVRVRLAHARITHLLDRAGIRGLHLKGYATEPGVYPD
+HRRSSDVDLLVPPADADAVIALLGSHGWEPVATFSQGSIFQHAATLWHDQLGYVDVHRLF
+PGLGASPEAAFDALWSEHIHLVIAGRSVPVPSPRHQRLVVIVHAARDPFRGGLDVRHIRE
+SLPAESWAALREEAHRLDAGAAWHVATGE-AADGVDSRQLTLFAALHESQSGLELFRTRW
+RSAATVRERAALVARTIPVNRPHLQMRLGRPVTRADLWREQGARLGALAGWAWTKAVRR-
+DR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001625.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001625.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6e75a83fb2a22ce56c38aff5730298225d364732
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001625.fa
@@ -0,0 +1,85 @@
+>AS2_ACLBLIBL_02421
+M-PPR---PPPVVAPLLPRLRAERAIEAAAASAARPLEARGVELEIGLPDGARAPLLTVLAEALAEGHGERAAVLVVTAT
+TREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGARLAVLRRLAHPEEHAQGPLRIVVAPVRAVLQPLVAGL
+GELSPVTLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDHPVRIEFFGDEVEQMRWFSVADQRS
+LEDTTEDGSGHPTELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLSPLLAEAMTSLPRMLPTG
+SLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDIAGADQSAAGGFLTVAELRAAALEQDQGFWSVTALAPD
+DELLPDAATLRSTLGVPRTFAGDMEAMVEHTRTRLAEGWHAVILTDGPGSARRLAELHADAGLTASVADGPVPAEPAPGR
+VTIATAAVGAGFTVPDERLAVITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLALQPGDHVVHAQHGIARFVELQRRKV
+TGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDLVSSYVGGEAPSLSKMGGSDWAQTKSKAKRATREIAGE
+LIRLYSARMASRGHAFAPDTPWQSELEEAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQ
+DGKQVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGTHRLLSDQVQFKDLGLVI
+VDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYSDQQVTAAIRRELM
+REGQVFYVHNRVTTIDKVARRIAELVPEARIAVAHGKMGEARLEQIMVDFWERRFDVLVSTTIIETGLDIANANTLIVED
+AHRYGLSQLHQLRGRVGRGRERAYAYFLYDAQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLGGEQSGHI
+AGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGP
+LPDPVEALVAVARFRNHARAAGITEVMLLGQNVKFGPAADLPESRQMRLARMYKGSQVKPALNGVLIPRPKTKPVMGQDL
+VDVPLLEWAQQVIDAIFAPE----G
+>KBS0714_MOLHKGIG_00531
+MSAPE---TTPVLAPLLPRLRAERALEAAAASASRPLEARGVELEIGLPDGARAPLLTVLAEALAEGHGERAAVLVVTAT
+TREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGARLAVLRRLAHPEEHAEGPLRIVVAPVRAVLQPLVAGL
+GELSPVTLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRS
+LEDTTEDGSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLSPLLAEAMTSLPRMLPTG
+SLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDVAEADQSAAGGFLTVAELRAAALEQDQGFWSVTALVSD
+AELLPDAATLRATLGVPQTFSGDIEAMVAHTRVRLAEGWHAVVLTDGPGSARRLAELNAEAGLTASVVDGPLPADLAPGR
+VSIATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGGHVVHSQHGIARFVELQRRKV
+TGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDLISTYVGGETPSLSKMGGSDWAQTKSKAKRATREIAGE
+LIRLYSARMASRGHAFAPDTPWQGELEEAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQ
+DGKQVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVIEGLAHGEVDVVIGTHRLLSDQVQFKDLGLVI
+VDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYSDQQVTAAIRRELM
+REGQVFYVHNRVTTIDKVAKRIAELVPEARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVED
+AHRYGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLGGEQSGHI
+AGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGP
+LPEPVEALVAVARFRNRARAAGVTEVMLLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLIPRPKTKPVMGQDL
+VDVPLLEWAQQVVDAIFAPE----G
+>KD337_NAFOICDF_02303
+MSPADVTAPVPVLAPLLPVLAREPAFEAAAASAARALPARGQELEIGLPDGARAPLFAHLADALAAGHGADAVLLVVTAT
+AREAEDLIGDLAAWADPASVALFPSWETLPHERLSPRSDTVGARLDVLRRLAHPGEDGRPPLRVVVAPVRSVIQPLVRGL
+GELAPVHLRVGQERDFDAVVQDLADAAYARVDMVSRRGEFAVRGGLIDVFPPTADHPVRVEFFGDEVEQMRWFSVADQRS
+LQDTSEDGSGHPTELHAPPCRELLVTPSVQERARALMARLPGAADMLERIAEGQAVEGMESLSPLLADGMTSLVHLLPEG
+SLTLLVEPERIRSRADDLLATNEEFLAAAWAGAAQGAQAPVDL-GADQSAAGGFLTLAELREAVLEERQGHWSTTALSPD
+AELLPDASALRSSLGVPTTFGADMEAMVRFTRERLADGWSVVLLTDGPGSARRLAELHADAGLTASVLDGPVDPAPAPGR
+VRVATAAVGTGFTDPETKLAVVTEQDLFGRHRTAGTRAAGGKLARRRRNAVDPLALQPGDFVVHSQHGIARFVELQRRPV
+TGGARKRPGEEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDLISQYVGGEAPALSKMGGSDWAQTKSKAKRATREIAGE
+LIRLYSARMATRGHSFAPDTPWQAELEEAFPYIETPDQLTTIEEVKKDMESPVPMDRLVSGDVGFGKTEVAVRAAFKAVQ
+DGKQVAVLVPTTLLARQHHQTFTDRFAGFPVTVAALSRFQTAKESKEVVEGLAAGEVDVVVGTHRLLSKEVQFKDLGLVI
+VDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYTDQQVIAAIRRELM
+REGQVFYVHNRVTTIDKVASRLAQLVPEARIAVAHGKMSESRLEQIMVDFWEKRFDVLVSTTIIETGLDIANANTLIVED
+AHRYGLSQLHQLRGRVGRGRDRAYAYFLYDAQKPLGEVAMERLKAVAQHNELGAGLQLAMKDLEIRGAGNLLGGEQSGHI
+AGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPGERLRLEMYRSLATAVDDAAVDAVVEEMKDRYGP
+LPEPVQALVAVARFRNRAREAGVTEVMLLGQNVKFGPAADLPESRQLRAQRMYKGAQLKPALNALLIPRPKTKPVMGQDL
+VDAPLLEWADQVVQAIFAPEPVSAG
+>SA211_MHAAABBN_00252
+MSAPE---TTPVLAPLLPRLRAERALEAAAASAARPLESRGVELEIGLPDGARAPLLTVLAEALAEGHGERAAVLVVTAT
+TREAEDLVTDLAAWAPAGTAALFPSWETLPHERLSPRSDTVGARLAVLRRLAHPEEHAEGPLRVVVAPVRAVLQPLVAGL
+GELSPVTLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRS
+LEDTTEDGSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLSPLLAEAMTSLPRMLPAG
+SLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDVAGADQSAAGGFLTVAELRAAALEQDQGFWSVTALVSD
+DELLPDAATLRATLGVAQTFSGDIEAMVAHTRVRLAEGWHAVVLTDGPGSARRLAELTTEAGLTAAVVDGPLPADLAPGR
+VSIATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHVVHSQHGIARFVELQRRKV
+TGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDLISTYVGGETPSLSKMGGSDWAQTKSKAKRATREIAGE
+LIRLYSARMASRGHAFAPDTPWQGELEEAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQ
+DGKQVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGTHRLLSDQVQFKDLGLVI
+VDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYSDQQVTAAIRRELM
+REGQVFYVHNRVTTIDKVAKRIAELVPEARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVED
+AHRYGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLGGEQSGHI
+AGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGP
+LPEPVEALVAVARFRNRARAAGVTEVMLLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLIPRPKTKPVMGQDL
+VDVPLLEWAQQVVDAIFAPE----G
+>TT9_LFPAFLNI_00531
+M-------SAPVLAPLLPRLRAERAIEAAAASASRPLEARGVELEIGLPDGARAPLLTVLAEALAEGHGERAAVLVVTAT
+TREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGARLAVLRRLAHPEEHAEGPLRIVVAPVRAVLQPLVAGL
+GELSPVTLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRS
+LEDTTEDGSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLSPLLAEAMTSLPRMLPTG
+SLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDVAGADQSAAGGFLTVAELRAAALEQDQGFWSVTALVSD
+AELLPDAATLRATLGVAQTFSGDIEAMVAHTRVRLAEGWHAVVLTDGPGSARRLAELNAEAGLTASVVDGPLPADLAPGR
+VSIATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHVVHSQHGIARFVELQRRKV
+TGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDLISTYVGGETPSLSKMGGSDWAQTKSKAKRATREIAGE
+LIRLYSARMASRGHAFAPDTPWQGELEEAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQ
+DGKQVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGTHRLLSDQVQFKDLGLVI
+VDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYSDQQVIAAIRRELM
+REGQVFYVHNRVTTIDKVAKRIAELVPEARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVED
+AHRYGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLGGEQSGHI
+AGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGP
+LPEPVEALVAVARFRNRARAAGVTEVMLLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLIPRPKTKPVMGQDL
+VDVPLLEWAQQVVDAIFAPE----G
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001627.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001627.fa
new file mode 100644
index 0000000000000000000000000000000000000000..790ce21837c148f34e560591ef02937408eb791a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001627.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02423
+MAFSAQQSIPHPPAAVAAALASEEFHRSVVEQLGGSLVSFRVEGSPEGPMTVTTVRSAPA
+DRL----PEMARKFIGSSLQVEQVERWEAPAADGSRVGTTTITVPAAKATAEGAQRLTAA
+GEGSQYSVDGTVTCKIPLVGSKLAAKAEPMVGKVVNRQARALTSWIGRDGGAAGA
+>KBS0714_MOLHKGIG_00529
+MAFSAQQSIPHPPAAVAAALASEDFHRSVVESFGGSLVSFSVEGSPEGPMTVTAVRSLPA
+DRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRAGTTTITVPSAKATADGALRLTAA
+GEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVNRQARALSSWLERDGGAARG
+>KD337_NAFOICDF_02305
+MAFSAQQTIPHPPAAVAEALFSEDFHRSVAESLGGGLVSFARQDQADGGVELTIVRSGPT
+DRL----PDMVRKVVGENLNIEQVERWSAPAADGSRTGTTTIRVPKAKATAEGTLRLAAA
+PAGTEYGVNGDLQVKIPLVGSKMAQMAEPMVGKVVARAGREVSAWIDRGG---RG
+>SA211_MHAAABBN_00250
+MAFSAQQSIPHPPAAVAAALASEDFHRSVVESFGGSLVSFSVEGSPEGPMTVTAVRSLPA
+DRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRAGTTTITVPSAKATADGSLRLTAA
+GEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVDRQARALSSWLERDGGAARS
+>TT9_LFPAFLNI_00529
+MAFSAQQPIPHPPSAVAAALASEDFHRSVVESFGGSLVSFSVEGSPEGPMTVTAVRSLPA
+DRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRTGTTTITVPSAKATADGSLRLTAA
+GEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVNRQARALSSWLERDGGAARG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001635.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001635.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ba34f0b276b1bd70e4486418017e496dc28a20c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001635.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02440
+MTGRIWILANQGEVGGGEVMLHHLATALRELGRDVGVVAPAHPAETADRLAANGFDVVRV
+GGPGRLGYLRALRAWDRDRGNDDVVWCNGLLPATALAGRPRRIVHLHQVPEKPLLRVFSA
+LARPGALAVLAPSRFAADRIRGARVLHNWVPGPT----TPPARRARDADEPVTVGFLGRL
+SEDKGIVTLLEAAALLRKTDPGAFVFRVAGESRFVAEDEAERLATALKAAGEDVQVLGWQ
+DTAEFLASVDVLAVPSQWAEVFGLVTAEAMAAGVPVVASDAGAVPEVVGNDHPFVFPQRD
+AAALADRLQAVRAGDLGAVAHSQRRRWASLFSPEAGRAAVAELLDDLSL
+>KBS0714_MOLHKGIG_00511
+MTGRIWILANQGEVGGGEVMLHHLATALRELGRDVGVVAPAHPAETADRLAADGFDVVRL
+GGPGRLGYLRALRAWDRGRGKDDVVWCNGLLPATALAGRPRRIVHLHQVPEKPLLRVFSA
+LARPGALAVLAPSRFAADRIRGARVLHNWVPAPT----TPQAGRARDADEPLTVGFLGRL
+SEDKGIVTLLEAAALLRKTDPGAFVFRVAGESRFVADDEAERLATALKAAGEDVQVLGWQ
+DTAEFLASVDVLAVPSQWAEVFGLVTAEAMAAGVPVVASDAGAVPEVVGSEHPFVFPQRD
+AAALADRLQAVRAVDLGAVAHSQQRRWESLFSPEAGRAAVAELLDDLSL
+>KD337_NAFOICDF_02323
+MTRRIWIAANQGEVGGGEVMLHHLATALHELGRDIAVVAPAAPSATAARLEADGFTVDRV
+GGPGRAGYMRALRRWHNGH-REDVVWCNGLLPATALAGRPRRIVHLHQWLIRPRDRVLGT
+LAMRGALAVIAPSESVAREIPGCRVLHNWVPRPLPLSGAAPARRRPGEGGALRVGYLGRL
+SFDKGFHLLMDVAEELHREQPDEWRFFVAGEPRFTTGDDAREIRERL-AASRAVTALGWQ
+APGDFLPTVDVLVVPSLAPESFGLVAAEAMAAGVPVAVSDSGALPEVAGDDHPLLFECDD
+HEELAAALRRARQIDLAPLVAAQHRRWEALFSPEAGRAGVAALLEELHV
+>SA211_MHAAABBN_00231
+MTGRIWILANQGEVGGGEVMLHHLATALRELGRDVGVVAPAHPAETADRLAADGFDVVRV
+GGPGRLGYMRALRVWDRGRGGDDVVWCNGLLPATALAGRPRRIVHLHQVPEKPLLRVFSA
+LARPGALAVLVPSRFAADRIHGARVLHNWVPGPT----TPQAGRARGTDEPVTVGFLGRL
+SEGKGIVTLLEAAALLRRTDPGAFVFRIAGESRFVAEDEAERLATALKAAGEDVQVLGWQ
+DTGEFLTSVDVLAVPSQWAESFGLVAAEAMAAGVPVVASDAGAVPEVVGSDHPFVVPQRD
+AAALANCLRAVRAVDLGEVAHSQRHRWASLFSPEAGRAAVAELLDDLSL
+>TT9_LFPAFLNI_00510
+MTGRIWILANQGEVGGGEVMLHHLATALRELGRDVGVVAPAHPAETADRLAADGFDVVRV
+GGPGRLGYLRALRAWDRGRDGDDVAWCNGLLPATALAGRPRRIVHLHQVPEKPVLRVFSA
+LARPGALAVLVPSRFAANRIRGARVLHNWVPAPT----APQTRPARGADDPVTVGFLGRL
+SEDKGIVTLLEAAALLRKTDPGAFVFRVAGESRFVAEDEADRLATALKAAGEDVQVLGWQ
+DSGEFLATVDVLAVPSQWAEVFGLVTAEAMAAGVPVVASDAGAVPEVVGSDHPFVVPQRD
+AAALANCLRAVRAIDLGAVAHSQRHRWESLFSPEAGRAAVAELLDDLSL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001636.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001636.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5a365b431409748a27835ef1521dbb0e3831a190
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001636.fa
@@ -0,0 +1,55 @@
+>AS2_ACLBLIBL_02442
+MITERHLTPYLVFPEDSLLVALQKMTDNRERIVFVVDSHGFLAGSLTDGDFRRWLLANPGASLEVAAVEAANRTPATGPV
+GASPAEVLAALPAGALHLPLLDERGRLAALAINRESELRIGEHRIGPGRPAFLIAEIGNNHQGSVDLARELVDLAVEAGA
+DAVKFQLRDMDALYRQSGAGTAGEDLGAQRTLDELAKFSLPAEDMVRVFDHVRDAGVALMCTPWDAPSMRVLAQYPVDGV
+KIASADLTNHGLLRDAAAARLPMVLSTGMSREDEIKEAVELVRSSGVPFAVLHAQSTYPAPYKDVNLAYLDRLAEIAQTP
+VGYSGHERGFHVPLAAVARGASIIEKHFTVDRGLEGNDHKVSLLPEEFAQMVRQTREIEESIGVAAERVVSTGEAMNRIN
+LAKSLVAARPLAAGETVTEDAVTVKSPGRGLQPNELPRLVGRTLHRDMAEGDFFFAGDLTDTVPTGRQFEFRRPWGLPVR
+YHDVEALTKDCTPDFLEFHFSYKDLEIDIDSVFTEPLPMGFTTHLPDIFSGDFLVDLASDDDAVWERSIAEVQRTIDITR
+DLKRWFPKEEAPIMVITMGGFTLDRHIAPAERQAKYDRIAEAVQRLDTSGIRIAAQTLPPFPWLMGGQQYHNLFMDPDDT
+VAFVEATGVPLCLDISHSKLSATFLGIPFSEMVEKLAPHTIHLHLVDATGVDGEGPQIGEGDVDWPVLCEQLDRLAPGVS
+FIPEIWQGHINNGEGFWTALDRLEQWL
+>KBS0714_MOLHKGIG_00508
+MIIERRLTPYLVFPEDSLLAALQKMTDNRERTVFVVDSHGFLVGSLTDGDVRRWLLAQPEASLDVAAADVAHRDPATAPL
+GATPAEMREALPAGALHLPLLDERGRLTALAINREAELRIGGHRIGEGHPAFLIAEIGNNHQGDVDLARRLVDLAVEAGA
+DAVKFQLRDMDALYRQSGAATAGEDLGAQRTLDELAKFSLSAEDMVRVFDHVREAGVALMCTPWDAPSMRVLREYPVDGV
+KIASADLTNHGLLRDAAASGLPMVLSTGMSREEEIREAAALVRSFGVPFAMLHAQSTYPAPYKDVNLAYLDRLAEIAQTP
+VGYSGHERGFHVALAAVARGAAIIEKHFTVDRGLEGNDHKVSLLPEEFAQMVRQTRDIEESIGVGTERVVSTGEAMNRIN
+LAKSLVAARPLRVGATITADDVTVKSPGRGLQPNELPRLVGRTLHREMAEGDFFFAGDLTDTVPTGRQFEFRRPWGLPVR
+YHDVEALTKDCTPDFLEFHFSYKDLEIDIDSVFSEPMPMGFTTHLPDIFSGDFLVDLASDDDAVWERSIAEVQRTIDITR
+DLKRWFPHEEEPIMVITMGGFTLDRHIRPEERLPKYERIAEAVQRLDTSGIRIAAQTLPPFPWLMGGQQYHNLFMDPDDT
+VAFVEATGVPLCLDISHSKLSATFLGIPFSEMVEKLAPHTIHLHLVDATGVDGEGPQIGEGDVDWPVLCEQLDRLAPGVS
+FIPEIWQGHINNGEGFWTALDRLEQWL
+>KD337_NAFOICDF_02326
+MIIERHLTPYLVFPEDSLTVALQKMTDNRERIVFVVDTHGFLQGSLTDGDVRRWLLAHPGAALDSPAVAAANPSPATGLV
+GDAPSSVLAALPEGALHLPLLDERGHLTALAINRESELRIGSHRVGEGRPAFLIAEIGNNHQGSVDLARRLVDLAVEAGA
+DAVKFQLRDMDALYRQSGAATAGEDLGAQRTLDELAKFSLSVDDMVKVFDHTRAAGVALMCTPWDAPSMQVLADYPVDGV
+KIASADLTNHGLLRDAASRGIPMVLSTGMSREEEIQESAALVRSYGVPFAMLHAQSTYPAPYKDVNLAYLDRLAEIAQAP
+VGYSGHERGFHVALAAVVRGASIIEKHFTIDRSLEGNDHKVSLLPDEFAQMVRQTREIEESIGVAGERVVSTGEAMNRIN
+LAKSLVAARSLTAGDVVAEADVTVKSPGRGLQPNQLPQLVGRTLHRDLEEGDFFFAGDLTDSVPTGRQFEFRRPWGLPVR
+YHDYAALTKDCTPDFLEFHFSYKDLEIDIDTVFREPMPGGFTTHLPDIFAGDFLVDLASMDEQVWERSIAEVQRTIDITR
+DLKRWFPSEEAPIMVITMGGFTLDRHIRPEERQPKYERIAEAVQRLDTSGIRIAAQTLPPFPWLMGGQQYHNLFMDPDDT
+VAFVEATGVPLCLDISHSKLSATFLGIPFSEMVEKLAPHTIHLHLVDATGVDGEGPQIGEGDVDWPVLCEQLDRLAPGVS
+FIPEIWQGHINNGEGFWTALDRLEQWL
+>SA211_MHAAABBN_00228
+MIIERRLTPYLVFPEDSLLAALQKMTDNRERTVFVVDSHGFLVGSLTDGDVRRWLLAHPEASLDVAAADVAHRDPATASL
+GASPDEMREALPAGALHLPLLDERGRLTALAINREAELRIGGHRIGEGHPAFLIAEIGNNHQGDVDLARRLVDLAVEAGA
+DAVKFQLRDMDALYRQSGAATAGEDLGAQRTLDELAKFSLSAADMVRVFDHVREAGVALMCTPWDAPSMRVLREYPVDGV
+KIASADLTNHGLLRDAAASGLPMVLSTGMSREEEIRESVALVRSFGVPFAMLHAQSTYPAPYKDVNLAYLDRLAEIAQTP
+VGYSGHERGFHVALAAVARGAAIIEKHFTVDRGLEGNDHKVSLLPEEFAQMVRQTRDIEESIGVGTERVVSTGEAMNRIN
+LAKSLVAARPLQAGVTITADDVTVKSPGRGLQPNELPRLVGRTLHREMAEGDFFFAGDLTDTVPTGRQFQFRRPWGLPVR
+YHDVEALTKDCTPDFLEFHFSYKDLEIDIDSVFREPLPMGFTTHLPDIFSGDFLVDLASDDDAVWERSIVEVQRTIDITR
+DLKRWFPNEEEPIMVITMGGFTLDRHIRPEERRPKYERIAEAVQRLDTSGIRIAAQTLPPFPWLMGGQQYHNLFMDPDDT
+VAFVEATGVPLCLDISHSKLSATFLGIPFSEMVEKLAPHTIHLHLVDATGVDGEGPQIGEGDVDWPVLCEQLDRLAPGVS
+FIPEIWQGHINNGEGFWTALDRLEQWL
+>TT9_LFPAFLNI_00507
+MIIERRLTPYLVFPEDSLLAALQKMTDNRERTVFVVDSHGFLVGSLTDGDVRRWLVAHPEASLDVAAADVAHRDPVTAPL
+GASPAEMREALPTGALHLPLLDERGRLTALAINREAELRIGGHRIGEGHPAFLIAEIGNNHQGDVDLARRLVDLAVEAGA
+DAVKFQLRDMDALYRQSGAATAGEDLGAQRTLDELAKFSLSAEDMVRVFDHVREAGVALMCTPWDAPSMRVLREYPVDGV
+KIASADLTNHGLLRDAAASGLPMVLSTGMSREEEIRESVALVRSFGVPFAMLHAQSTYPAPYKDVNLAYLDRLAEIAQTP
+VGYSGHERGFHVALAAVARGAAIIEKHFTVDRGLEGNDHKVSLLPEEFAQMVRQTRDIEESIGVGTERVVSTGEAMNRIN
+LAKSLVAARPLQAGATITADDVTVKSPGRGLQPNELPRLVGRTLHREMAEGDFFFAGDLTDTVPTGRQFQFRRPWGLPVR
+YHDVEALTKDCTPDFLEFHFSYKDLEIDIDSVFTEPMPMGFTTHLPDIFSGDFLVDLASDDDAVWERSIAEVQRTIDITR
+DLKRWFPNEEEPIMVITMGGFTLDRHIRPEERLPKYERIAEAVQRLDTSGIRIAAQTLPPFPWLMGGQQYHNLFMDPDDT
+VAFVEATGVPLCLDISHSKLSATFLGIPFSEMVEKLAPHTIHLHLVDATGVDGEGPQIGEGDVDWPVLCEQLDRLAPGVS
+FIPEIWQGHINNGEGFWTALDRLEQWL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001639.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001639.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7980c2b95fa6819337d1eae6e43d6b8d643157b4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001639.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02445
+MSGTGYTVPARG-ARGTGRAERLFLVSPAFHGYHRSIARAWAAQGFDVTVHCYDAYATVP
+MKLRNKALLELPQKAGVDRTAARVAWDTERAVAALRAARPDRVLVIKGDSLGEAFWSEVV
+EAGLPRLLWLYDDLSRHDYSPEFLRAIGPVLSYARSEAEQLAGEGVDAHYLPNGFDPDMA
+LPSLPRREELVFVGSRYPNRVELLTTLAEAGVPVRAYGRQWSHHPVDRLRTWEVTRPALP
+AERDIPLEEAYAVQAAAAGAINIHGLQAGHAMRTFEVPGMGGLQLVDRADVAEFYEPGEE
+VLVFENPEHLVELGRRVVAEPSWGERIREAGRSRSHAEHTFAHRAALAQEWWT
+>KBS0714_MOLHKGIG_00505
+MSATGYTVPAPPDARGGRSPERLFLVSPAFHGYHRSIAAAWAAQGFDVTVHCYDAYATLG
+MKLRNKGLLELPQKAGVDRTAARVAWDTGRAVAALREARPDRVLVIKGDSLGEDFWSEIL
+EAGLPRMLWLYDDLARHDYSMEFLRSVGPVLSYARSEAELLAGEGVDAHYMPNGFDPAMA
+LPQVPRRDELVFVGSRYPNRVELLARLAAAGVPVRAYGRQWSHHPVDRLRTWELTRPDLP
+AERDIPLEEAYAVQAAAAGAINIHGLQAGHAMRTFEVPGMGGLQLVDRADVAEFYVPDEE
+VLVFEDADHLIELGRRVVADPAWGARIREAGRRRSHAEHTFAHRAAMAQGWWA
+>KD337_NAFOICDF_02329
+MSAGTYTIAARGERPVSGRPERLFLVSPAFHGYHRSIAAAWAAQGFDVTVHCYDAYADLG
+MKLRNKLALELPQKAGLDRTAARVAWDTDRAVAALRAAAPDRVLVIKGDSLGDAFWDEVT
+GRALPRMLWLYDDLSRHDYSMDFLRGIGPVLSYARSEAESLAAQGVDAHYMPNGFDPEMV
+LPAVPRTEELVFVGSRYPNRVELLRALASAGVPVRAYGRQWSHHPVDRLRTWELSRPDLP
+AERDIPLAEAYAVQAAAAGAINIHGLQAGHAMRTFEVPGMGGLQLVDRPDVAEFYVPGEE
+VLVFEDTEHLVELGRRIVAEPAWGDRIRAAGRRRSHAEHTFSHRARMAQEWWA
+>SA211_MHAAABBN_00225
+MSATGYTVAAPPEARGGRSPERLFLVSPAFHGYHRSIAAAWAAQGFDVTVHCYDAYATLG
+MKLRNKGLLELPQKAGVDRTAARVAWDTGRAVAALREARPDRVLVIKGDSLGEDFWSEIL
+DAGLPRMLWLYDDLARHDYSMEFLRSVGPVLSYARSEAELLAGEGVDAHYMPNGFDPAMA
+LPEVPRRDELVFVGSRYPNRVELLTRLAAAGVPVRAYGRQWSHHPVDRLRTWELTRPDLP
+AERDIPLEEAYAVQAAAAGAINIHGLQAGHAMRTFEVPGMGGLQLVDRADVAEFYVPDEE
+VLVFEDADHLIELGRRIVADPAWGARIREAGRRRSHVEHTFAHRAAMAQGWWA
+>TT9_LFPAFLNI_00504
+MSATGYTVPAPPDARGGRSPERLFLVSPAFHGYHRSIASAWAAQGFDVAVHCYDAYATLG
+MKLRNKGLLELPQKAGVDRTAARVAWDTGRAVAALREARPDRVLVIKGDSLGEDFWSAIL
+DAGLPRMLWLYDDLARHDYSMEFLRSVGPVLSYARSEAELLAGEGVDAHYMPNGFDPAMA
+LPQVPRRDELVFVGSRYPNRVELLSRLTAAGVPVRAYGRQWSHHPVDRLRTWELTRPDLP
+AERDIPLEEAYAVQAAAAGAINIHGLQAGHAMRTFEVPGMGGLQLVDRADVAEFYVPDEE
+VLVFEDADHLIELGRRVVADPAWGARIREAGRRRSHAEHTFAHRAAMAQGWWA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001640.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001640.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a7bc021819aadececd94f7ce3457c18d733d8627
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001640.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02446
+MAAQSTAAAVTVVIPHYGDPAPTLALVDRLLADPGDALAAVVVSDDASPTPYPEAHDPR-
+-LTVVRRERNGGFGANVNTGLSEVDTDLALVLNSDALITGEQIDALVAAAAPFQPAVVSP
+QVVNEDGSPQWSGRHFPTVLHQGVEWLTPLARFRHLPLLHEAVGHDVAAARSAAPVAVDW
+VMGAVMLLPMAQVRAVGGFDEEYFMNSEEVDLQRRLRDRGVASIVVPSVRVEHGMHGSSD
+PLRRRGWLVDSRFRYARKFGRPRALKAVLTAATGVNYAVNRVRQARGTDVDAAAVLRDEH
+ALIWKGTRR
+>KBS0714_MOLHKGIG_00504
+MAAQSTTAAVTVVIPHYGDPAPTLALVDRLLTDPGDALAAVVVSDDASPTPYPEAHDPR-
+-LTVVRRERNGGFGANVNTGLAAVTTELALVLNSDAEITGAQIDALVVAAAPYQPAVVSP
+QVVNEDGTPQWSGRHFPTVLHQTVEWLTPLARFRHLDVLHEAVGHDVAATRSASPVAVDW
+VMGAVLLLPMAQVRAVGGFDEEYFMNSEEVDLQRRLRERGVPSIVVPAVRVPHGLHGSSD
+PLRRRGWLVDSRYRYARKFGHPRVLKAALTAATGANFAVNALRQARGVDVDARAVLRDEH
+ALVWKGQRR
+>KD337_NAFOICDF_02330
+MPASRIAPSVTVVIPHYGDPEPTRALVDALLAAPGRSVAGVVVSDDASPEPYPQPAPGRE
+GLTVVRREANGGFGANVNTGLAEVRTELALVLNSDAEITGEQIDALVEAARPYQPAVVSP
+QVVNEDGSPQWSGRHFPTVTHQTVEWLTPLARFRHLPALHEAVGHDVRAAEADSPVAVDW
+VMGAVMLLPMAEVRAVGGFDEEYFMNSEEVDLQRRLRERGVPSVVVPSVRVVHGLHGSSD
+PLRRRAWLVDSRFRYARKFGRPRLLRGALTAATGVNWAVNRVRQTRGTDVDANAVFRAER
+DLIWKGTRR
+>SA211_MHAAABBN_00224
+MAAQSPTAAVTVVIPHYGDPAPTLALVDRLLTDPGDALAAVVVSDDASPTPYPEAHDPR-
+-LTVVRRERNGGFGANVNTGLAAVTTELALVLNSDAEITGAQIDALVAAAAPYQPAVVSP
+QVVNEDGTPQWSGRHFPTVLHQTVEWLTPLARFRHLDVLHEAVGHDVAATRSASPVAVDW
+VMGAVLLLPMAQVRAVGGFDEEYFMNSEEVDLQRRLRERGVPSIVVPAVRVPHGLHGSSD
+PLRRRGWLVDSRYRYARKFGHPRVLKAALTAATGANFAVNVLRQARGVDVDARAVLRDEH
+ALVWKGKRR
+>TT9_LFPAFLNI_00503
+MTAQSPTAAVTVVIPHYGDPAPTLALVDRLLSDPGDALAAVVVSDDASPTPYPEAHDPR-
+-LTVVRRERNGGFGANVNTGLAAVTTELALVLNSDADITGAQIDALVAAAAPYQPAVVSP
+QVVNEDGSPQWSGRHFPTVLHQTVEWLTPLARFRHLDVLHEAVGHDVAAARSASPVAVDW
+VMGAVLLLPMAQVRAVGGFDEEYFMNSEEVDLQRRLRERGVPSIVVPAVRVPHGLHGSSD
+PLRRRGWLVDSRYRYARKFGHPRVLKAALTAATGANFAVNALRQARGVDVDARAVLRDEH
+ALVWKGRRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001644.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001644.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7db61cd02bbabc7a98376dc46aaf0de3d43f882d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001644.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02450
+MPQSSVRPSAVIVLAAGQGTRMKSTTPKIMHPIGGRSLVGHALAAAHSLAPEHLVAVVRYERDRVAEHIESVAEGLGIAS
+LAIADQDEVPGTGRAVELGLAALPKDLEGTVVVTYGDVPLLTPETLERLVAAHEADGNAVTVLTAALEDATGYGRIVRDG
+EGLVERIMEHKDALAHAESTGDSSFVEIREVNSGIYAFDAALLRRTLPAISTDNVQGEKYLTDVLGMARAEGGRVASVGT
+DDVWEVEGANDRRQLSDLGRRLNDRVLRHWMKEGVTVVDPSSTWVDVTVSLASDVTLKPGTQLHGATQVATGAVVGPDTT
+LTDTRVGERAVVKRTDATEAVIGADATVGPFTYLRPGTVLGEEGKIGAFYETKKVTIGRGAKLSHLGYAGDAEIGDYTNI
+GCGNITANYDGEKKHRTVIGAHVRTGSNTVFTAPVTVGDGAYTGAGAVVREDVPAGALALNAVSQRTIEGWVPAKRPGTS
+SAQAAQAADAQG-----DAPQG
+>KBS0714_MOLHKGIG_00497
+MSQPSARPSAVIVLAAGQGTRMKSTTPKIMHAIGGRSLVGHALAAAWSLSPEHLVAVVRHERARVAEHIETVAAQLGIDA
+LAIADQDDVPGTGRAVELGLAALPADLEGTVVVTYGDVPLLTPETLARLVADHEADGNAVTVLTATLEDATGYGRIVRDA
+EGLVERIMEHKDALAHAEATGDDSFVAIREVNSGIYAFDAALLRRTLPEISTDNVQGEKYLTDVLGMARAEGGRVASVGT
+DDVWEVEGANDRRQLSDLGRQLNDRVLRGWMKEGVTVVDPSSTWVDVTVSLASDVTLKPGTQLHGATSVATGAVVGPDST
+LTDTQVGEGAVVKRTDATEAVIGAGATVGPFTYLRPGTVLGEDGKIGAFYETKNVTVGRGAKLSHLGYAGDAEIGEYTNI
+GCGNITANYDGVNKHRTVIGAHVRTGSNTVFTAPVTVGDGAYTGAGAVVREDVPAGALALNAVSQRTLEGWVPAKRPGTS
+SAEAARAAGAEG-----SGAQG
+>KD337_NAFOICDF_02334
+MPQTAVRPSAVIVLAAGQGTRMKSATPKIMHAIGGRSLVGHALAAAQSLAPEHLVTVVRHERDRVAAHIEEAAADLGVTG
+LAIADQDEVPGTGRAVELGLAALPEDLEGTVVVTYGDVPLLTPETLQRLVAAHEADGNAVTVLTATLADATGYGRIVRDA
+DGLVERIMEHKDALAHAEATGDSSYVEIAEVNSGIYAFDAALLRRTLPQLSTENVQGEKYLTDVLGMARAEGGRVASVGT
+DDVWEVEGANDRRQLSDLGRQLNERVLRRWMKDGVTVVDPSSTWVDVTVELAADVTLKPGTQLHGSTTVATGAVVGPDST
+LVDTRVGERGTVKRTDATEAVIGDDATVGPFTYLRPGTVLGEEGKIGAFYETKKVTIGRGAKLSHLGYAGDAEIGEYTNI
+GCGNITANYDGVDKHRTVIGSHVRTGSNTVFIAPVTVGDGAYTGAAATVRQDVPAGALALNAVDQRNVDGWVVSRRAGTA
+SAEAAQAAGAVGRDQATEAAQD
+>SA211_MHAAABBN_00218
+MSQPSARPSAVIVLAAGQGTRMKSTTPKIMHAIGGRSLVGHALAAAWSLAPEHLVAVVRHERARVADHLETVAAQLGIDA
+LAIADQDDVPGTGRAVELGLAALPADLEGTVVVTYGDVPLLTPETLARLVADHEADGNAVTVLTATLEDATGYGRIVRDA
+EGLVERIMEHKDALAHAESTGDDSFVAIREVNSGIYAFDAALLRRTLPEISTDNVQGEKYLTDVLGMARAEGGRVASVGT
+DDVWEVEGANDRRQLSDLGRQLNDRVLRGWMKEGVTVVDPSSTWVDVTVSLASDVTLKPGTQLHGATSVATGAVVGPDST
+LTDTQVGEGAVVKRTDATEAVIGAGATVGPFTYLRPGTVLGEDGKIGAFYETKNVTVGRGAKLSHLGYAGDAEIGEYTNI
+GCGNITANYDGVAKHRTVIGAHVRTGSNTVFTAPVSVGDGAYTGAGAVVRDDVPAGALALNAVAQRTIEGWVPAKRPGST
+SAQAARAAGAEG-----SGAQG
+>TT9_LFPAFLNI_00496
+MSQPSARPSAVIVLAAGQGTRMKSTTPKIMHAIGGRSLVGHALAAAWSLAPEHLVAVVRHERARVAEHLETVAAQLGIDA
+LAIADQDDVPGTGRAVELGLAALPADLEGTVVVTYGDVPLLTPETLARLVADHEADGNAVTVLTATLEDATGYGRIVRDA
+EGLVERIMEHKDALAHAESTGDDSFVAIREVNSGIYAFDAALLRRTLPEVSTDNVQGEKYLTDVLGMARAEGGRVASVGT
+DDVWEVEGANDRRQLSDLGRQLNDRVLRGWMKEGVTVVDPSSTWVDVTVSLASDVTLKPGTQLHGATSVATGAVVGPDST
+LTDTQVGEGAVVKRTDATEAVIGAGATVGPFTYLRPGTVLGEDGKIGAFYETKNVTVGRGAKLSHLGYAGDAEIGEYTNI
+GCGNITANYDGVNKHRTVIGAHVRTGSNTVFTAPVTVGDGAYTGAGAVVREDVPAGALALNAVSQRTLEGWVPAKRPGTS
+SAEAARAAGAEG-----SGAQG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001645.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001645.fa
new file mode 100644
index 0000000000000000000000000000000000000000..22495f2c051698f9b1ab9bd146657d0ca3916c1a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001645.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02453
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGRVTRRGGVRVGVLDQQDRLDP
+THTVRQAVVGDVEDHVWASDPKVRDVLGGLLDGLDLEQTVEGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAW
+LARHLKDRWRPTDGGLVVVTHDRWFLDEVCTRTWEVHDATVDPFDGGYAAWILARAERARQAAVVEQKRQQLMKKELAWL
+RRGAPARTSKPKFRIEAANAIIADVPEPRDSVSLAKTATARLGKDVLDLEHVGLSLGEKRILDDVTLRLAPGERLGVVGV
+NGAGKSTLLRLLDGRLEPDSGRVKRGKTVVTATLTQDVKELDEVAHLRVAEVMAREGSAFQVGDKEMSAGQLLEMLGFGT
+SRQWTQVSELSGGERRRLQLLRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMDAAGASGGPARGAGAARGRNDVVGTCAGM--GGPEEDTGPTEAERRLARKEMARLEKQ
+MTRLRDSRSVLEARMAELGQAQDFDALTAASADLKDLDAQLDVLEEEWLQAAELTEGD
+>KBS0714_MOLHKGIG_00494
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGRVTRRGGVRVGVLDQQDRLDP
+EHTVRQAVVGDVDDHVWASDPKVRDVLGGLLDGFDLEQSVRGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAW
+LARHLKPRWRPTDGGLVVVTHDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL
+RRGAPARTSKPKFRIEAANAIIEDVPAPRDSVSLAKMATARLGKDVLDLEHVSLTLGEKPILDDVTLRLAPGERLGVVGV
+NGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKELDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGT
+SRQWTQVSELSGGERRRLQLLRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMDEA---GGPARGAGPVRGRNDVVGTCAGM--GGPEEDTGPTEAERRLARKEMARLEKQ
+MTRLRDRRSGLEARMAALGQAQDFDALTAASADLKDLDAQLDVLEEEWLRAAELAEGD
+>KD337_NAFOICDF_02337
+MAHLLGAENIGISFGTRTVLDGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGRVTRRGGVHVGVLDQRDVLDP
+QDTVRRAVVGDVEDHVWASDARIRDVLGGLLAGMDLEQRVEGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAW
+LAGHLNARWRPNDGGLVVVTHDRWFLDAVCTRTWEVHDAAVDPFDGGYAAWILARAERARQAQVTEQKRQQLMKKELAWL
+RRGAPARTSKPKFRIEAANAIIADVPEPRDTVSLAKTATARLGKDVIDLEDVTLTLGDRTILDDVTLRLAPGERLGVVGV
+NGAGKSTLLRLLDGRLQPDSGRMKRGKTVVSATLTQDVKELDEVADLRVAEVMAREGSAFQVGDREMSPGQLLEMLGFGP
+TRQWTAVSELSGGERRRLQLLRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGRVRDLPGGVDQYLELRVLMDDA---GGAAPAPGSSRGRGDAQGTCAGMVVDIPE----VSEAERRQARKDMARLERQ
+MQRLRESRGGIEARMAELGQAQKYDELGAATAELTAVDAELEDLEEQWLEAAE--RDA
+>SA211_MHAAABBN_00215
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGRVTRRGGVRVGVLDQQDRLDP
+EHTVRQAVVGDVDDHVWASDPKVRDVLGGLLDGFDLEQSVRGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAW
+LARHLKQRWRPTDGGLVVVTHDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL
+RRGAPARTSKPKFRIEAANAIIEDVPAPRDSVSLAKMATARLGKDVLDLEHVSLTLGEKPILDDVTLRLAPGERLGVVGV
+NGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKEPDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGT
+SRQWTQVSELSGGERRRLQLLRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMADA---GGPARGAGVARGRNDVVGTCAGM--GGPEEDTGPTEAERRLARKEMARLEKQ
+MTRLRDRRSGLEARMAELGQAQDFDALTAASADLKDLDAQLDVLEEEWLQAAELAEGD
+>TT9_LFPAFLNI_00493
+MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGRVTRRGGVRVGVLDQQDRLDP
+EHTVRQAVVGDVDDHVWASDPKARDVLGGLLDGFDLDQPVRGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAW
+LARHLKQRWRPTDGGLVVVTHDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL
+RRGAPARTSKPKFRIEAANAIIQDVPAPRDSVSLAKMATARLGKDVLDLEHVSLTLGEKPILDDVTLRLAPGERLGVVGV
+NGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKELDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGT
+SRQWTQVSELSGGERRRLQLLRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL
+GDGKVRGLPGGVDQYLELRAAMDDA---GGPARGAGAARGRNDVVGTCAGM--GGPEEDTGPTEAERRLARKEMARLEKQ
+MTRLRDRRSGLEARMAELGQAQDFDALTAASADLKDLDAQLDVLEEEWLQAAELAEGD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001647.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001647.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4217bbb186614f395df69a610eba73e469a9f67a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001647.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02455
+--------------------------------------MIDPNTIRRIVQAAGVGPDEHV
+LEIGPGLGSLTLGLLDAAAAVTAVEIDPVTAERLPHTVQEFRPASADALAVLHADALRMT
+AADLDAVRPAAAPGGPTALVANLPYNVAVPVLLHALAELPGLRHGLVMVQEEVADRLAAG
+PGSRVYGVPSAKAAWYAQVDKAGTIGTQVFWPAPRIHSGLVAFTRREPPTSAVSRAETFA
+VVDGAFAQRRKTLRAALAGWAGSPQAAEDALVAAGVDPRTRGEALGIEAFARIAEHGPRR
+AAGEGSA
+>KBS0714_MOLHKGIG_00492
+MVQPSPHPAPAPLLSAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHV
+LEIGPGLGSLTLGLLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLS
+EQALAEVRPAAAAGGPTALVANLPYNVAVPVLLHALAVLPGLRHGLVMVQEEVADRLAAG
+PGSKVYGVPSAKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPTGGASRREVFA
+VVDAAFAQRRKTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAEHGPRR
+AAE-VSA
+>KD337_NAFOICDF_02339
+MVPPPDAPATAPLLSAADVRRLAAELDLRPTKQWGQNFVIDPNTIRRIVAAADLAPDEHV
+LEIGPGLGSLSLGLLDAASAVTAVEIDPVTAARLPATAAEFRPERAADLAVLHADAMTLT
+AEGLDSVRPAGAASGPTALVANLPYNVAVPVLLHALAVLPGLRHGLVMVQEEVADRLAAG
+PGSRVYGVPSAKAAWYADVRKAGVIGTQVFWPAPRIHSGLVAFTRREPPTQAVDRREVFA
+VVDAAFAQRRKTLRAALATWAGSPALAEEALVAAGVDPKARGEALDIAAFARIAEHRPEA
+AS-----
+>SA211_MHAAABBN_00213
+MVQPSPHPAPAPLLSAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHV
+LEIGPGLGSLTLGLLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLS
+EQALAEVRPAAAAGGPTALVANLPYNVAVPVLLHALAVLPGLRHGLVMVQEEVADRLAAG
+PGSKVYGVPSAKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPAGSTSRREVFA
+VVDAAFAQRRKTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAEHGPRR
+AAEEVVA
+>TT9_LFPAFLNI_00491
+MVQPSPHPAPAPLLSAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHV
+LEIGPGLGSLTLGLLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLS
+EQALAEVRPAAAAGGPTALVANLPYNVAVPVLLHALAVLPGLRHGLVMVQEEVADRLAAG
+PGSKVYGVPSAKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPAGGASRREVFA
+VVDAAFAQRRKTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAEHGPRR
+AAEEVVA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001648.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001648.fa
new file mode 100644
index 0000000000000000000000000000000000000000..964148494670258646f517c9db84db757a0be542
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001648.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02456
+MLTRLLKARLPEGTQYLVDRPMRIRLVFVVLGSVLVAGLEMVALASILPLVSLLTSGELGSPALEGLLARFGAVTVPEQT
+VAFAVVIVLAFLLKAILVLAFRWWTMGFTNQNLIRTSATLLRYYLRADYGLHLTRTVGTLVNNVTGTSSMAYTGVVNASV
+TFLTEAVTLVAVAVVVGVSMPLTGLGMALYFLAVAWVIKAVIRRPASRLGWTLVTTGERANTAALQGLENYKDVKIRGND
+SAFMEEYRAARAESAEATRLKMILTMMPRYVLEVAFVAAIAALVAVAFVQGRGGEAFGSLALLAMAGFRVLPSMAALMAT
+TNEIRASWPAFERTTAELADAQPVLDAADRPYERLEFAREIEVRGASYTYPGSDEPVLRDIDLTIPFGTSYAFVGGSGAG
+KTTLIDLLIGFHHAQDGAVLVDGVELEANPRGWWDNVAFVPQSVTVVNGSVLHNVVLDLEAAETADRAAVEQVLRDAQLG
+EWLDALPEGLDTVIGEGAVGVSGGQRQRLGIARALFRRPRLLVLDEATSALDNLTERRVTEVIESLKGRITVLVVAHRLS
+TVKHCDQIVLMDQGRIIGQGTFRGLQETSPEFQELVRLGDLSA
+>KBS0714_MOLHKGIG_00491
+MLTRLLKARLPEGTQYLVDRPMRIRLVFVVLGSVLVAGLEMVALASILPLVSLLTSGELGSPALEGLLARFGAVTVPEQT
+VAFAVVIVLAFLLKAILVLAFRWWTMGFTNQNLIRTSATLLRYYLRADYGLHLTRTVGTLVNNVTGTSSMAYTGVVNASV
+TFLTEAVTLVAVTVVVGVAMPLTGLGMALYFLAVAWVIKTVIRRPASRLGWTLVTAGERANTAALQGLENYKDVKIRGND
+SAFMEEYRAARMESAEATRLKMILTMMPRYVLEVAFVAAIAALVAVAFIQGRGGEAFGSLALLAMAGFRVLPSMAALMAT
+TNEIRTSWPAFERTTAELAAAQPVLHAADRPYERITFEESIEVRDASFTYPGKAEPVLRDIDLRIPFGSSYAFVGGSGAG
+KTTLVDLVIGFHHAQRGGVYVDGVELEANPRGWWDNVAFVPQSVTVVNGTVLHNVLLDVEAAQTADRAEVERVLREAQLG
+QWLDELPDGLDTVIGEGAVGVSGGQRQRLGIARALFRRPRLLVLDEATSALDNLTERRVTEVIESLRGRITVIVVAHRLS
+TVKRCDQIVLMDQGRIIGQGTFAGLQETSPEFRELVRLGDLST
+>KD337_NAFOICDF_02340
+MVTRLLKSRLPEGTQYLVDRPMRIRLGFVVLGSILVALLEMAALASILPLVNLLTTGSPGAPVITELLASVGAVSVAEQT
+VAFAGVIVVAYLLKAVLVLSFRWWTMGFTNKNLIQTSAKLLRYYLRADYGLHLTRTVGTLVNNVTGTSSMAYTGVVNASV
+TLLTEAVTLLAVGIVVGVTMPLTALGMGAYFLVVTLIIRHVIRKPASQLGWTLVVTGERANTAALQGLENYKDVKVRGND
+SAFMDEYVDARRENAEAIRLKMILTMMPRYVLEVAFVAAIAGLVAVAFASGRGDQAFGSLALLAMAGFRLLPSIASVMAT
+SNEIRASWPAFERTVAELKDAQPVLDAADRPYDRLPFERSLEARNASFTYPGKDEPVLKGIDLSIPFGASYAFVGGSGAG
+KTTLVDLLIGFHHAQQGGVYVDGVELQADPRGWWDNVAFVPQSVTVVNGSVLHNVVLDIEAARTADRTEVERVLRDAQMG
+DWLDALPDGLDTVVGEGAVGVSGGQRQRLGIARALYRRPRLLVLDEATSALDNVTERKVTDVIESLKGRITVIVVAHRLS
+TVKHCDQVVLMDEGRILDQGTFAGLQETSPEFQELVRLGDLSS
+>SA211_MHAAABBN_00212
+MLTRLLKARLPEGTQYLVDRPMRIRLVFVVLGSVLVAGLEMVALASIIPLVSLLTSGELGSPALEGLLARFGAVTVPEQT
+VAFAVVIVVAFLLKAILVLAFRWWTMGFTNQNLIRTSATLLRYYLRADYGLHLTRTVGTLVNNVTGTSSMAYTGVVNASV
+TFLTEAVTLVAVAVVVGVAMPLTGLGMALYFLAVAWVIKTVIRRPASRLGWTLVTTGERANTAALQGLENYKDVKIRGND
+SAFMEEYRAARMESAEAMRLKMILTMMPRYVLEVAFVAAIAALVAVAFIQGRGGEAFGSLALLAMAGFRVLPSMAALMAT
+TNEIRTSWPAFERTTAELAAAQPVLHAADRPYERITFEEAIEVRDASFTYPGKAEPVLRDIDLRIPFGSSYAFVGGSGAG
+KTTLVDLVIGFHHAQRGGVYVDGVELEANPRGWWDNVAFVPQSVTVVNGTVLHNVLLDVEAAQTADRAEVERVLREAQLG
+QWLDELPDGLDTVIGEGAVGVSGGQRQRLGIARALFRRPRLLVLDEATSALDNLTERRVTEVIESLRGRITVIVVAHRLS
+TVKRCDQIVLMDHGRIIGQGTFAGLQETSPEFRELVRLGDLST
+>TT9_LFPAFLNI_00490
+MLTRLLKARLPEGTQYLVDRPMRIRLVFVVLGSVLVAGLEMVALASILPLVSLLTSGELDSPALEGLLARFGAVTVPEQT
+VAFAVVIVLAFLLKAILVLAFRWWTMGFTNQNLIRTSATLLRYYLRADYGLHLTRTVGTLVNNVTGTSSMAYTGVVNASV
+TFLTEAVTLVAVAVVVGVAMPLTGLGMALYFLAVAWVIKTVIRRPASRLGWTLVTAGERANTAALQGLENYKDVKIRGND
+SAFMEEYRAARMESAEATRLKMILTMMPRYVLEVAFVAAIAALVAVAFIQGRGGEAFGSLALLAMAGFRVLPSMAALMAT
+TNEIRTSWPAFERTTAELAAAQPVLHAADRPYERVTFEEAIEVRDASFTYPGKAEPVLRDIDLRIPFGSSYAFVGGSGAG
+KTTLVDLVIGFHHAQRGGVYVDGVELEANPRGWWDNVAFVPQSVTVVNGTVLHNVLLDVEAAQTADRAEVERVLREAQLG
+QWLDELPDGLDTVIGEGAVGVSGGQRQRLGIARALFRRPRLLVLDEATSALDNLTERRVTEVIESLRGRITVIVVAHRLS
+TVKRCDQIVLMDQGRIIGQGTFAGLQETSPEFRELVRLGDLST
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001650.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001650.fa
new file mode 100644
index 0000000000000000000000000000000000000000..75a872de521c08b2018f6df4669e0a041c590f12
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001650.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02459
+MTPRPTDLPSPSGRIVLAATPIGNLGDASARLRELLAEADVIAAEDTRTARRLCQGLGVT
+PAGRVVAHHEHNEAASTQGLLDQVRGGATVAVVSDAGMPTVSDPGYRLVAAAVSAGLPVT
+CAPGPSAVTTALALSGLPTDRFAFDGFVPRKDGERRRWLTSLLTEARTVVAFESPQRLAD
+ALAVVVEVLGAERPVCVARELTKLHEEVVRGTAAEVHAWAAERHAGEGIRGEIVLVIGPA
+SPDAASAGGATEADAVAEVGVLVDSGTRLKEAVATVAAAHGLRSRTLYQAVLAAR-G
+>KBS0714_MOLHKGIG_00487
+M---------PEGRIVLAATPIGNLGDASARLRDLLAEADVIAAEDTRTARRLCAGLGVT
+PAGRVVAHHEHNEAASAQGLLDQVRGGATVAVVSDAGMPTVSDPGYRLVAAAVSAGLPVT
+CAPGPSAVTTALALSGLPTDRFAFDGFVPRKDGERRRWLTSLLTEARTVVAFESPQRLAD
+ALAVVAEVLGAERPVCVARELTKLHEEVVRGTAAGVHAWAAERHAGEGIRGEIVLVIGPA
+APGA--EGEASEADAVAEVAVLVESGTRLKEAVAAVAGAHGMRSRELYQAVLAAR-G
+>KD337_NAFOICDF_02343
+M-----SLPAASGRIVLAATPLGNLGDATGRLRELLATADVIAAEDTRNTRRLCQGLGIT
+PAGRLMAHHEHNEAASAAGLLERVRAGETVVMVSDAGMPTVSDPGFRLVEAAVAAGLPVT
+CAPGASAVTTALALSGLPSDRFAFDGFLPRKDGERRRRLEEIRTDPRTVVYFESPQRTAS
+ALAVIAEVLGGARPVCVARELTKLHEEVVRGTADELVAWAVEREAGEGIRGEVAIVVGPA
+APDA--GAGADEADVLAEVAALTDSGTRLKEAVAAVAAAHGLRSRELYQAVLDARRG
+>SA211_MHAAABBN_00207
+M----------TGRIVLAATPIGNLGDASARLRELMAEADVIAAEDTRTARRLCAGLGVT
+PAGRVVAHHEHNEAASTQGLLDQVRGGATVAVVSDAGMPTVSDPGYRLVAAAVSAGLPVT
+CAPGPSAVTTALALSGLPTDRFAFDGFVPRKDGDRRRWLTSLLTEARTVVAFESPQRLAD
+ALAVVVEVLGAERPVCVARELTKLHEEVVRGTAADVHAWAAERHAGEGIRGEIVLVIGPA
+APGA--EGEASEADAVAEVAVLVESGTRLKEAVAAVAGAHGMRSRELYQAVLAAR-S
+>TT9_LFPAFLNI_00487
+M---------PEGRIVLAATPIGNLGDASARLRDLLAEADVIAAEDTRTARRLCAGLGVT
+PAGRVVAHHEHNEAASAQGLLDQVRGGATVAVVSDAGMPTVSDPGYRLVAAAVSAGLPVT
+CAPGPSAVTTALALSGLPTDRFAFDGFVPRKDGERRRWLTSLLTEARTVVAFESPQRLAD
+ALAVVVEVLGAERPVCVARELTKLHEEVVRGTAAGVHAWAAERHAGEGIRGEIVLVIGPA
+APGA--EGEASEADAVAEVAVLVESGTRLKEAVAAVAGAHGMRSRELYQAVLAAR-G
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001651.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001651.fa
new file mode 100644
index 0000000000000000000000000000000000000000..44035ab198af3b0813553779e6643e9a43195158
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001651.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02461
+MEPVPATALAPRPA---AVAVDGA---PFGVAALRARLGVSAAPLTRWHWILPLLVTALAGVLRFTNLAHPDQLIFDETY
+YPKDAYSLLQSGYERRWEEDVNDAFVRGEAEPLESAAYVVHPPLGKWLIGLGMLAFGTDNGVGWRFSSAVAGTLSVLLVA
+LVAQHLLRSVSLGAVAGLLLAVEGHHLVMSRIGLLDIFLSFFVLAAFAALLADRAHGRQLLARRL-----AHDVARRGHA
+ALATGPWLGWRPWRLLAGVLLGAGCAVKLSGLAFMAAFGLLTVLWDMAARRDAGVRDWARAGVVKDGLLAFVAVVGGGLV
+AYLASWTGWFATEGGYYRMWHRDNPPEGPLAGLVPGPLRSLWHYHVESTTFHEGLTSPHDYAASPWTWPFMGRPVSYYYR
+GGEPGQEVCPADAPSACSAAITDIANPLLWWTGLIAVLVCLWLLIRHRDWRAGALLGAYLAGQVVWFLWPERTMFFFYTV
+AYEPFLILMIVLALSLLLRPGRRPGPRWGSALVLAYAAAVVGVSLFFLPVWIGDVIPYDQWRWRMWFNSWI
+>KBS0714_MOLHKGIG_00486
+MEPVPATALAPRPA---AVAADDG---PFGVAALRARLGVSAAPLTRWHWILPLLVTVIAGVLRFTNLAHPDQLIFDETY
+YPKDAYSLLESGYERRWGEDVNDAFARGEAEPLEGAAYVVHPPLGKWLIGLGMLAFGPDNGVGWRFSAAVAGTLSVLLVA
+LATQHLLRSVSLGAVAGLLLAVEGHHLVMSRIGLLDIFLSFFVLAAFAALLADRVHGRRLLAERL-----AHDVARRGRD
+ALASGPWLGWRPWRLLAGVLLGAGCAVKLSGLAFMAAFGLLTVLWDMSARRTAGVRRWAWAGVEKDGLYAFVAVVGGGLV
+AYLASWTGWFVTEGGYYRDWHRDNPPEGVLAGLVPGPLRSLWHYHVESTTFHQGLTSPHDYAANPWTWPFMGRPVSYYYE
+GAEPGEGICPADAAGACSAAITDIANPFVWWTGLAAVLVCVWLLVRHRDWRAGALLGAYAAGQLVWSLWPERTMFFFYTI
+AYEPFLVMMIALALSLLLRPGRRPGPRWGSALVLAYVTIAVAVSLFFLPVWIGDVIPYDQWRWRMWFSSWI
+>KD337_NAFOICDF_02344
+MACVPASSLTRRPAHALPAPADDAAAHPFGAAALRARLGVQAAVLTRWHWIVPLAVTVLAGVIRFTNLAFPDKLIFDETY
+YPKDAYSLILSGYERRWAPDVDAAFAQGTAQPLDEPAYVVHPPLGKWLIALGMLAFGPDNGVGWRFSAAVAGTLSVLLVT
+LVAQRLFRSVSLGALAGLLLAVEGHHIVMSRIGLLDIFLSFFMIAAFAALLADRDHGRRLLASRLAEQVAAHDAGTRRGD
+PLAFGPRLGWRPWRILAGALLGAGCAVKLSGLAFMAVFGILTVLWDMEARRTAGIRHWLRAGVVRDGLPAFAAVVGAGLA
+VWLASWTGWFASEGGYYRRWAQDNPPEGPLSALLPGPLRSLIHYQLEAFTFHEGLTSPHDYGSSPWTWPFMGRPVSYFYE
+GGKPGENGCPSTAADACSSAITDIANPFIWWTGLIAVLVCLAVLVRHRDWRAGALLGAYVAGQVVWFRWPERTMFFFYTV
+AYEPFLILMIVLALSLLLRRGHRPGPRWGAVLVAAYLLVAVGVSLFFLPVWIGERIPYPQWSWRMWFSTWI
+>SA211_MHAAABBN_00205
+MEPVPATALAPRPA---AVAVDDG---PFGVAALRARLGVSAAPLTRWHWILPLLVTVIAGVLRFTNLAHPDQLIFDETY
+YPKDAYSLLESGYERRWDEDVNDAFARGEAEPLEGAAYVVHPPLGKWLIGLGMLAFGPDNGVGWRFSAAVAGTLSVLLVA
+LATQHLLRSVSLGAVAGLLLAVEGHHLVMSRIGLLDIFLSFFVLAAFAALLADRAHGRRLLAERL-----AHDVARRGRD
+ALASGPWLGWRPWRLLAGVLLGAGCAVKLSGLAFMAAFGLLTVLWDMSARRTAGVRRWAWAGIEKDGLYAFVAVVGGGLV
+AYLASWTGWFVTEGGYYRDWHRDNPPEGLLAGLVPGPLRSLWHYHVESTTFHQGLTSPHDYAANPWTWPFMGRPVSYYYE
+GAEPGEGICPPDAAGACSAAITDIANPFVWWTGLAAVLVCVWLLVRHRDWRAGALLGAYAAGQLVWFLWPERTMFFFYTI
+AYEPFLVMMIALALSLLLRPGRRPGPRWGSALVLAYVTIAVAVSLFFLPVWIGDVIPYDQWRWRMWFSSWI
+>TT9_LFPAFLNI_00486
+MEPVPATALASRPA---AVAVDDG---PFGVAALRARLGVSAAPLTRWHWILPLLVTAIGGVLRFTNLAHPDQLIFDETY
+YPKDAYSLLESGYERRWDEDVNDAFARGEAEPLEGAAYVVHPPLGKWLIGLGMLAFGPDNGVGWRFSAAVAGTLSVLLVA
+LATQHLLRSVSLGAAAGLLLAVEGHHLVMSRIGLLDIFLSFFVLAAFAALLADRVHGRRLLAERL-----AHDVARLGRD
+ALASGPWLGWRPWRLLAGVLLGAGCAVKLSGLAFMAAFGLLTVLWDMSARRTAGVWHWAWAGVEKDGLYAFVAVVGGGLV
+AYLASWTGWFVTEGGYYRDWHRDNPPEGLLAGLVPGPLRSLWHYHVESTTFHQGLTSPHDYAANPWTWPFMGRPVSYYYE
+GAEPGEGICPADAAGACSSAITDIANPFVWWTGLAAVLVCVWLLVRHRDWRAGALLSAYVAGQLVWFLWPERTMFFFYTI
+AYEPFFVMMIALALSLLLRPGRRPGPRWGSALVLAYVTIAVAVSLFFLPVWIGDVIPYDQWRWRMWFSSWI
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001659.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001659.fa
new file mode 100644
index 0000000000000000000000000000000000000000..80f956be398af2c0170166dfc883fe4958f2d7f9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001659.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02469
+MLSDLWSRLTGLVSMLWREVAKFGTVGAAAFVIDSLVFWWMMTGPLEGSNVKAKIVAGVV
+ATLFSWVANRYWTFREKRSSNKTRELVMFLLMNAIGLGIQAGCVFIAQYLMGVTDPGGLF
+IAGNVVGLFFGTVFRYFAYRFWVFKEELDVEPGFANDIAIITGQMPVLR-DEQLHPHGRH
+EARGRPAERHVRRD--DGPARHRAS
+>KBS0714_MOLHKGIG_00478
+MLSDLWGRLTGMASLLWREVAKFGTVGAAAFVVDSLVFWWMMTGPLEGSNVKAKIVGGVV
+ATLFSWVANRYWTFRDKRSSNKTRELVMFLIMNAIGLGIQAGCVAIAQYLMGVTDPTGLF
+IAGNVIGLFFGTVFRYFAYRFWVFKEKLDVEPGFANDLAIITGQMPVLR-EDQLPPHGRH
+RA---P-----DAGV----------
+>KD337_NAFOICDF_02353
+MPTDLWHRFTGLVSMLWREVAKFGTVGAAAFVVDSAVFWWLMHGPLEGSNVKAKICAGVV
+ATIFSWVANRYWTFRDKRQNNVVRELVMFLVMNAVGLGIQAGCVAIAQYGMGVTDPNGLF
+IAGNVIGLFFGTVFRYFAYRFWVFKEELDEEPGFENDIAVITGQLPVLHAHDEHVPGLQH
+RH---P-----RHDVEDGSA-----
+>SA211_MHAAABBN_00196
+MLSDLWGRLTGMASLLWREVAKFGTVGAAAFVVDSLVFWWMMTGPLEGSNVKAKIVGGVV
+ATLFSWVANRYWTFRDKRSSNKTRELVMFLIMNAIGLGIQAGCVAIAQYLLGVTDPTGLF
+IAGNVIGLFFGTVFRYFAYRFWVFKEKLDVEPGFANDLAIITGQMPVLR-EDQLRPRGRH
+RT---P-----DAGV----------
+>TT9_LFPAFLNI_00478
+MLSDLWGRLTGMASLLWREVAKFGTVGAAAFVVDSLVFWWMMTGPLEGSNVKAKIVGGVV
+ATLFSWVANRYWTFRDKRSSNKTRELVMFLIMNAIGLGIQAGCVAIAQYLMGVTDPTGLF
+IAGNVIGLFFGTVFRYFAYRFWVFKEKLDVEPGFANDLAIITGQMPVLR-EDQLPPHGRH
+RA---P-----DAGV----------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001660.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001660.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d1a56ce6feccb93111c88d1ac3992bb5d78a0e2f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001660.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02470
+---------MMAGPAAELGVPFRVLAEAPDASAAQVAPHVVGDHTDLADLRAFAATVDVVTFDHEHVPTEHLRVLQEVGV
+AVRPGPEALQHAQDKLVMRAAVERLGLPNPAWAAVRDLDEVLAFGDEHGWPMILKTPRGGYDGKGVLKLDDADDARASAS
+DGTLGTWLGAGIAPLLAEALVPFTRELSAQVARTPSGRVAAYPVVDSVQVAGVCDLVVAPARDLDPAVAEAATAAAVRLA
+EELDVTGMLAVELFETPGVGPGFQINELAMRPHNSGHWSMDGAVTGQFEQHVRAVLDLPLGDTAPRGAGVVMKNLLGGAR
+EDLHAGLADALAAHPQAKVHLYGKAVRPGRKVGHVNVVADHGLTLEQAVRAAESAAAVLRDGAAPDAVDASPSSPATPHP
+AGGPPMTATPQNPAQPLQDDAPVVSVVMGSDSDWPVMSAAAEALRELDVPVEVGVVSAHRMPHEMVEFGARAHERGIRVI
+VAGAGGAAHLPGMLASVTPLPVIGVPVKLKSLDGLDSLLSIVQMPAGVPVATVSVDGARNAGLLAARILASADTEEGERL
+RAALTEHAAELNAQAQAKGARLRERMAADR
+>KBS0714_MOLHKGIG_00477
+---------MMAGAAAELGVPFRVLAEAPDASAAQVAPHVVGDHTDLADLRAFAATVDVVTFDHEHVPTEHLRALQEAGV
+AVRPDPEALQHAQDKLVMRAAVERLGLPNPAWAPVDDLEAVLAFGDEHGWPMILKTARGGYDGKGVLKLDDADDARASAA
+DGTLAAWLGAGITPLLAEALVPFSRELSAQVARTPSGEVAVYPVVDSVQVAGVCDLVVAPAQDLDPAVAAAATAAAVRLA
+EELDVTGMLAVELFETPGVGPGFQVNELAMRPHNSGHWSMDGAVTGQFEQHVRAVLDLPLGETAPRGAGVVMKNVLGGAR
+EDLHAGSVAALAAHPQAKVHLYGKDVRPGRKVGHVNVVADHGLSLEEAVRTAESAAALLRD----DAPTTGTETEARP--
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>KD337_NAFOICDF_02354
+MIGGGQLARMMAGPAAELGVPFRVLAEAPDASAAQVAPHMVGDHASLEDLRAFAATVDVVTFDHEHVPTEHLRTLEAAGV
+AVRPGPDALQYAQDKLLMRGLVERLGLPNPAWAPVSSLEEVIAFGDEHGWPMILKTARGGYDGKGVLKVDSADDARSGAA
+DGTLGTWLGAGIAPLLAEAMVPFARELSAQVARRPSGEVAAYPVVASLQTQGVCDVVTAPAPDLAPAVAEAASGAAVRIA
+EELDVTGMLAVELFETPGTDAGFQVNELAMRPHNSGHWSMDGAVTGQFEQHVRAVLDMPLGGTAPRGDGTVMKNVLGGAH
+EDLHSGFSEALAAHPEAKVHVYGKGVRPGRKVGHVNVVAEHGLSLADAERIAESTAAVLRDA---TAPSAPTPKA-----
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>SA211_MHAAABBN_00195
+---------MMAGAAAELGVPFRVLAEAPDASAAQVAPHVVGDHTDLADLRAFAATVDVVTFDHEHVPTEHLRALQEAGV
+AVRPDPEALQHAQDKLVMRAAVERLGLPNPAWAPVDDLEAVLAFGDEHGWPMILKTARGGYDGKGVLTLDDADDARASAA
+DGTLAAWLGAGIAPLLAEALVPFSRELSAQVARTPSGEVAVYPIVDSVQVAGVCDLVVAPAQDLDPAVAAAATAAAVRLA
+EELDVTGMLAVELFETPGVGPGFQVNELAMRPHNSGHWSMDGAVTGQFEQHVRAVLDLPLGETAPRGAGVVMKNVLGGAR
+EDLHAGSVVALAAHPQAKVHLYGKDVRPGRKVGHVNVVADHGLSLEEAVRTAESAAALLRD----DAPTTGTETEARP--
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
+>TT9_LFPAFLNI_00477
+---------MMAGAAAELGVPFRVLAEAPDASAAQVAPHVVGDHTDLADLRAFAATVDVVTFDHEHVPTEHLRALQEAGV
+AVRPDPEALQHAQDKLVMRAAVERLGLPNPAWAPVDDLEAVLAFGDEHGWPMILKTARGGYDGKGVLKLDDADDARASAA
+DGTLAAWLGAGITPLLAEALVPFSRELSAQVARTPSGEVAVYPVVDSVQVAGVCDLVVAPAQDLDPAVAAAATAAAVRLA
+EELDVTGMLAVELFETPGVGPGFQVNELAMRPHNSGHWSMDGAVTGQFEQHVRAVLDLPLGETAPRGAGVVMKNVLGGAR
+EDLHAGSVAALAAHPQAKVHLYGKDVRPGRKVGHVNVVADHGLSLEEAVRTAESAAALLRD----DAPTTGTETEARP--
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001663.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001663.fa
new file mode 100644
index 0000000000000000000000000000000000000000..294e433d2c02cd5dd6e3360c3c0b45f8a11e9257
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001663.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02474
+MTSASSEKTGYENHVPDRNLAMELVRVTEAAAIAASPWVGYGDKNKADGAAVDAMRAFMD
+TVSMAGTVVIGEGEKDEAPMLFNGEEVGDGSGAPVDVAVDPIDGTRLTAMGYNNALSVFA
+VAERGTMFDPSAVFYMDKLVVGPEAADFVDLRLPVKQNVALVAKALDKPASQVTVCVLDR
+PRHEGLVKEIREAGARVKFILDGDVAAAIAAARPDTGVDMMMGIGGTPEGIVTACAIKAT
+GGVIQGRLAPTDETEKQKALDAGLDLDAVLSTNDLVTSDHCYFAATGITDGDLLRGVRFV
+DGRVVTQSIVMRSWSGTVRTVDAEHDVRKWSKWLEDRGTRTGR
+>KBS0714_MOLHKGIG_00473
+MTSASSEKTGYENHVPDRNLAMELVRVTEAAAIAASPWVGYGDKNKADGAAVDAMRAFMD
+TVAMDGTVVIGEGEKDEAPMLFNGEQVGDGSGAAVDVAVDPIDGTRLTAMGYNNALSVFA
+VAERGTMFDPSAVFYMDKLVVGPEAADFVDMRLPVKQNVNLVAKALDKPVSQVTVCVLDR
+PRHEGLVKEIRQAGARVKFILDGDVAGAIAAARPDTGVDMMMGIGGTPEGIVTACAIKAT
+GGIIQGRLAPTDDAEKQKALDAGLDLDAVLTTNELVTSDHCYFAATGITDGDLLRGVRFA
+DGRVHTQSIVMRSSSGTVRTVDAEHDVKKWSKWLGDRDAR---
+>KD337_NAFOICDF_02358
+MTSASSENTGYENHVPDRNLAMELVRVTEAAAIAASPWVGGGDKNRADGAAVDAMRAFMD
+TVAMDGTVVIGEGEKDEAPMLFNGERVGDGKGASVDVAVDPIDGTRLTAMGYNNALSVFA
+VAERGTMFDPSAVFYMDKLVVGPEAADFVDMRLPVKQNVNLVAKALDKPVSQVTVCVLDR
+PRHEGLVKEIRAAGARVKFILDGDVAGAIAAARPDTGVDMMMGIGGTPEGIVTACAIKAT
+GGVIQGRLAPTDDAEKQKALDAGLDLDAVLTTDELVTSDHCYFAATGITDGDLLRGVRFA
+GGRVHTQSIVMRSKSGTVRTVDAEHHVDKWSQWLKNRG-----
+>SA211_MHAAABBN_00191
+MTSASSEKTGYENHVPDRNLAMELVRVTEAAAIAASPWVGYGDKNKADGAAVDAMRAFMD
+TVAMDGTVVIGEGEKDEAPMLFNGEQVGDGSGAAVDVAVDPIDGTRLTAMGYNNALSVFA
+VAERGTMFDPSAVFYMDKLVVGPEAADFVDMRLPVKQNVNLVAKALDKPVSQVTVCVLDR
+PRHEGLVKEIRQAGARVKFILDGDVAGAIAAARPGTGVDMMMGIGGTPEGIVTACAIKAT
+GGIIQGRLAPTDDAEKQKALDAGLDLDAVLTTNELVTSDHCYFAATGITDGDLLRGVRFA
+DGRVHTQSIVMRSSSGTVRTVDAEHDVKKWSKWLGDRDAR---
+>TT9_LFPAFLNI_00473
+MTSASSEKTGYENHVPDRNLAMELVRVTEAAAIAASPWVGYGDKNKADGAAVDAMRAFMD
+TVAMDGTVVIGEGEKDEAPMLFNGEQVGDGSGAAVDVAVDPIDGTRLTAMGYNNALSVFA
+VAERGTMFDPSAVFYMDKLVVGPEAADFVDMRLPVKQNVNLVAKALDKPVSQVTVCVLDR
+PRHEGLVKEIRQAGARVKFILDGDVAGAIAAARPGTGVDMMMGIGGTPEGIVTACAIKAT
+GGIIQGRLAPTDDAEKQKALDAGLDLDAVLTTNELVTSDHCYFAATGITDGDLLRGVRFA
+DGRVHTQSIVMRSSSGTVRTVDADHDVKKWSKWLEDRDAR---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001664.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001664.fa
new file mode 100644
index 0000000000000000000000000000000000000000..32c313ecc75495f13f92f283dedf5d0c84d8b9d6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001664.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02475
+MLTVSSTHPTDPTDPNA-PAPRPVLTAKQAQRARQPWIGMVLSVVALLALVAVVLILNPE
+PPQRPREDRVDVAAAAATVPHDDGVLPALAPEVPESWYANFARLQTMDGVSTWDVGWVVT
+DTVFAGMQQAHDVDPTWVTLRVDSVPATETLEIDGLAWDLHADPRAPEKRLVTEVEDTTV
+VLTTTGDRAVLEDLARGVAKETR
+>KBS0714_MOLHKGIG_00472
+MLTVSS------ADPHA-PAPRPVLTATQAQRARQPWMAMVLSLAALLAIVAVVLLLNPE
+PPQRPREDRVDVAAEAATIPHDDGDLPALAPEVPESWYANYARLQKLDGVSTWDVGWVVT
+DTVFAGLQQAEDVDPTWVSLRVDQVPTSETIEIDGIAWDLHADPKKPERRLVAEVDGSTV
+VLTTTGDQAVLEDLAHGVAKETR
+>KD337_NAFOICDF_02359
+MPGMSS------PDPAAPPAPRPVLTPKQAQRARAPWIAMVLSTLAVLGIVLVALMVNQP
+PPAPAQADRVDVAAAASTVPHDDGALPALAPDVPEPWDSTYARVERLQGVDTWDVGWAVN
+DAVFAGLKQTSRADPTWLALRVGSAPAVGTVDVDGITWDHYAPQDSKDQHLVAEVRGSTL
+VLTTSGDQAVLEDLARAVAKEIR
+>SA211_MHAAABBN_00190
+MLTVSS------ADPHA-PAPRPVLTATQAQRARQPWMAMVLSLAALLAIVAVVLLLNPE
+PPQRPREDRVDVAAEAATIPHDDGDLPALAPEVPESWYANYARLQKLDGVSTWDVGWVVT
+DTVFAGLQQAEDVDPTWVSLRVDQVPTSETIEIDGIAWDLHADPKKPERRLVAEVDGSTV
+VLTTTGDQAVLEDLAHGVAKETR
+>TT9_LFPAFLNI_00472
+MLTVSS------ADPHA-PAPRPVLTATQAQRARQPWMAMVLSLAALLAIVAVVLLLNPE
+PPQRPREDRVDVAAEAATVPHDDGDLPALAPEVPESWYANYARLQKLDGVSTWDVGWVVT
+DTVFAGLQQAEDVDPTWVSLRVDHVPTSETIEIDGIAWDLHADPKKPERRLVAEVDGSTV
+VLTTTGDRAVLEDLAHGVAKETR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001667.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001667.fa
new file mode 100644
index 0000000000000000000000000000000000000000..53c55b0a555a79f4814581cf816e33f79fd85c39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001667.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02478
+MDGVGWAWAQGLPATAVLWSAGLAWFAVCAAVLVRVDLREHRLPNRWTLRLALGGLAAMA
+GGAALAGRADLVLSSVLGGLGYAAAMLVLHVLSRGSLGMGDVKLAAGLGAYTGVLGGSAV
+VAAGLGAILLGGAVAAVLVAARRASRSTALPFGPPMILAAAAVLAFAPAGG
+>KBS0714_MOLHKGIG_00469
+MSGVGWAWTHGAPATAVLWSLGLVWFAVCAGVLVRTDLREHRLPNRWTLRLALGGLTMMT
+GGALLAGRGDLTLCSLLGGLGYTVAMLALHVLSRGGLGMGDVKLAGGLGVYTGVLGPTAV
+LAAGVGAILLGGVVAGLLVLAGRATGRTALPFGPAMVAAAAGVLVLA----
+>KD337_NAFOICDF_02362
+MTWWTGAWEAGERLTAMLWAAGLVWFLLCSVVLARTDLREHRLPNRWTGRLALGGVVAMG
+GGAVLGGLWSVVASCLLGGLGYALAMLALHVLTRGGLGLGDVKLAAGLGLYCGVAGLAAV
+LAAAVLAVLLGGVVAVVLVLARRADRHTALPFGPAMVAGALGVLLLA----
+>SA211_MHAAABBN_00187
+MSGVGWAWTHGAPATAVLWTLGLAWFAVCSGVLVRTDLREHRLSNRWTLRLALGGLAMMT
+GGALLAGRGDLALCSLLGGLGYTVAMLALHVLSRGGLGMGDVKLAGGLGVYTGVLGPTAV
+LAAGVGAILLGGVVAGLLVLAGRATGRTALPFGPAMVAAAAGVLVLA----
+>TT9_LFPAFLNI_00469
+MSGVGWAWTHGAPATAVLWTLGLAWFAVCSGVLVRTDLREHRLSNRWTLRLALGGLAMMT
+GGALLAGRGDLALCSLLGGLGYTVAMLALHVLSRGGLGMGDVKLAGGLGVYTGVLGPTAV
+LAAGVGAILLGGVVAGLLVLAGRATGRTALPFGPAMVAAAAGVLVLA----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001669.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001669.fa
new file mode 100644
index 0000000000000000000000000000000000000000..350943e194ce600f0030fc6dc0c148ad5699f8d8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001669.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02480
+MSMHRPTP-RLPERGAVPAARPAPSLAERVSGRLVAVIAPTLLLVAALWVVQIALVFFGR
+LVIPSLGLIPRSVTGLDGILFSPLLHAGWGHLIGNASALILLGPLAALISGRPLALLAAA
+WLGSGVLTWVIGSPGVHIGASGIVYALVAFLVVYGIAVRRVVPVVVSVLVALTHLGSSLI
+GLLPAPGVSWTGHLAGAVVGVLLGLWWGRGDRRPRHA-DI
+>KBS0714_MOLHKGIG_00467
+--MHRPSP-GLPDLPGGPA--PAPTLAERAGGRLLGAVAPTAVLIAAMWVAQFVLIFLGR
+VIIPGVGLIPRRLDGLDGVLFSPVLHAGWAHLIGNTTALLVLGPLAALVSRRPVALLVCA
+WLGSGLLTWVIGTPGVHIGASGIVYALIAFLIVYGVAVRRIGAVVVSVLVALTHLGSSLI
+GLLPAPGISWTGHLAGAVVGVLLGLWWGRADRQVPNR--R
+>KD337_NAFOICDF_02364
+M----PLPDRRPADDAVPA--PRPSLTQAAAQGLVRTVAPTAVLVAAMWVMFLVSIVGGS
+TLIGGLGLIPRRAAGLDGILFSPLLHGGWRHLVGNTTALLVLGPVAAAVSRRPLALLAAA
+WLGSGALTWVIGTPGVHVGASGIVYALIAFLLVYGVVARRVLAVVVAVAVAAAHLGSSLL
+GLLPQPGVSWTGHLAGAVVGVGLALLWGRADRPARAPLGP
+>SA211_MHAAABBN_00185
+MSMHRPSP-GLPDLPGGPA--PAPTLAERAGGRLLGAVAPTAVLIAAMWVAQVVLIFLGR
+VIIPGVGLIPRRLGGLDGVLFSPVLHAGWAHLIGNTTALLVLGPLAALVSRRPVALLVCA
+WLGSGLLTWVIGTPGVHIGASGIVYALIAFLIVYGIAVRRIGAVVVSVLVALTHLGSSLI
+GLLPAPGISWTGHLAGAVVGVLLGLWWGRADRQVPNR--R
+>TT9_LFPAFLNI_00467
+--MHRPSP-GLPDLPGGPA--PAPTLAERAGGRLLGAVAPTAVLIAAMWVAQFVLIFLGR
+VIIPGVGLIPRRLDGLDGVLFSPVLHAGWAHLIGNTTALLVLGPLAALVSRRPVALLVCA
+WLGSGLLTWVIGTPGVHIGASGIVYALIAFLIVYGVAVRRIGAVVVSVLVALTHLGSSLI
+GLLPAPGISWTGHLAGAVVGVLLGLWWGRADRQVPNR--R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001671.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001671.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3bd9d8bcb4d1e184fb4f4808735ff12cd6393823
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001671.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02482
+------MDPLTPAREPEAARRLRWRIERIRDPEHPLFKPRLRGWIHAAMAPLTLAAGIVL
+IVLAPTATLRWASAVYAVTGLLLFGVSATYHLVQWNEVVSRVLKRLDHTNIMLVIAGTYT
+PLSLALLPPGKAHLLLTLVWAGAVAGVAFRLLWTDAPRWLYTPVYVVLGLAALLYIGDFF
+AADVAAGWLIVAGGAAYIVGAVFYALRAPTIHREWFGFHELFHVFTVGGFVCHAVAIYRA
+VLVVA
+>KBS0714_MOLHKGIG_00465
+---------MTPLRETDAARRLRWRIERIRDPDHPLYKPRLRGWIHAVMAPLTLAAGIVL
+IVLAPTATLRWASAVYAVTGLLLFAVSATYHLVQWNEVVSRVLKRLDHTNIMLVIAGTYT
+PLSLALLAPDRARVLLTLVWVGAVAGVAFRVLWTDAPRWLYTPVYVALGLAALLYLGDFF
+AADAAAGWLIVAGGVAYITGAVCYALQAPTIHREWFGFHELFHAFTVAGFVCHAVAIYRA
+VLVVA
+>KD337_NAFOICDF_02366
+MWEHGGMVTRAPSVENRTGRPLKWRIERIRDPEHPLYKPRLRGWVHAVMAPLVLVAGIVL
+IVLAPGATLTWACVVYVVTGLLLFGVSATYHLVQWNETVSRVLKRLDHTNIMLVIAGTYT
+PLSLAMLPADKAWTLVTAVWVGAALGVAFRLLWTDAPRWLYTPVYVALGLAAVVYLGDFF
+AASVPAAVLICAGGAAYIVGAVFYALKAPTIHREWFGFHELFHVFTVGGFVCHYIAVMMA
+VLAA-
+>SA211_MHAAABBN_00183
+---------MTPLRETDAARRLRWRIERIRDPDHPLYKPRLRGWIHAVMAPLTLAAGIVL
+IVLAPTATLRWASAVYAVTGLLLFAVSATYHLVQWNEVVSRVLKRLDHTNIMLVIAGTYT
+PLSLALLAPDRARVLLTLVWVGAVAGVAFRVLWTDAPRWLYTPVYVALGLAALLYLGDFF
+AADAAAGWLIVAGGVAYITGAVCYALQAPTIHREWFGFHELFHAFTVAGFVCHAVAIYRA
+VLVVT
+>TT9_LFPAFLNI_00465
+---------MTPLRETDAARRLRWRIERIRDPDHPLYKPRLRGWIHAVMAPLTLAAGIVL
+IVLAPTATLRWASAVYAVTGLLLFGVSATYHLVQWNEVVSRVLKRLDHTNIMLVIAGTYT
+PLSLALLAPDRARVLLTLVWVGAVAGVAFRVLWTDAPRWLYTPVYVALGLAALLYLGDFF
+AADAAAGWLIVAGGVAYITGAVFYALQAPTIHREWFGFHELFHAFTVAGFVCHAVAIYRA
+VLVVA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001672.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001672.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0d3ff8d3f43b9a5b3096db449bbe36686aa8f139
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001672.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02483
+MSPLSGLPLVLTALAAAS----PAPVPAVPEPTLRPGLEEAEVTPGIEGFLFTALMVVMA
+IIVLRVMVRSVRRVQQRSPEAEAMLVDRHQQHLPEDVRELAPEDEERDAQDRLRHLQEKY
+PGYLQEPAPRPQSPDDGRS--
+>KBS0714_MOLHKGIG_00464
+MTPLSGLPLVLTALAAAS----PAPVPAVPEPTLRPGLEEAEVTPGIEGFLFTALMVVMA
+IIVLRVMVRSVRRVQQRSPQAEAMLVERHQQHLPDEVRA-GGEHLDADSEDRLRRLQEKY
+PGYLQEPAPEPQAPDTGRD--
+>KD337_NAFOICDF_02367
+---MSLAPLALSAVSLAASVSPSAPMPAVPEPTLKPGLDKQDISPGIEGFLFTALMVVMA
+IIVFRLMVRSVRRVQQRSPEAEAMLVDRHQQHLPEEVRE-GGERLDGDAHDRIERLRRRY
+PGYLQDPTPEPESPDTGREPR
+>SA211_MHAAABBN_00182
+MTPLSGLPLVLTALAAAS----PAPVPAVPEPTLRPGLEEAEVTPGIEGFLFTALMVVMA
+IIVLRVMVRSVRRVQQRSPEAEAMLVERHQQHLPDEVRA-GGEHLDADSEDRLRRLQEKY
+PGYLQAPAPEPQAPDTGRD--
+>TT9_LFPAFLNI_00464
+MTPLSGLPLVLNALAAAS----PAPVPAVPEPTLRPGLEEAEVTPGIEGFLFTALMVVMA
+IIVFRVMVRSVRRVQQRSPQAEAMLVERHQQHLPDEVRA-GGEHLDADSEDRLRRLQEKY
+PGYLQEPAPEPQAPDTGRD--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001679.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001679.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f2c35356c7f68ce22528499ea3d598f1884106d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001679.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02491
+MANPVMNSQNFQQQMQGGGQAQPGWYQGGTQSAQSPYGQQQSPYGQAQAFGAGQAAQQYA
+HQQSMEDAFRAPSAGPEQTGRMTFNDVVGKTGLMLVLVVVAGAVGWFSPGLMIIGAIAGL
+VLGLVNAFKREPSPVLIMAYAVAQGLFLGGISAFFEGAYPGIVVQAVLGTFSVFAVMLAL
+YTSGKFRPTPRMTKIVMGAMIGYLVFMLVNMVLTWTGIGNMREGGLGLIIGAIAVLLAAY
+SLTMDFEMAAVGVKNGAPQKYSWSVAFGLTVTLIWLYIEILRIVAILRGND
+>KBS0714_MOLHKGIG_00456
+MANPVMNSQNFQQQMQGGGQAQPGWYQGGQQSAQSPYGQQQSPYGQAQAFGAGQAAQQYA
+HQQSMEDAFRAPSAGPEQTGRMTYNDVVGKTGLMLVLVVVAGAVGWFSPGLMIIGAIAGL
+VLGLVNSFKREPSPVLIMLYALAEGLFLGGISAVFEAAYPGIVVQAVLGTFSVFAVMLAL
+YTSGKFRPTPRMTKIVMTAMLGYLVFMLINLVLTWTGIANLRTGGLGLIIGAIAVLLAAY
+SLTMDFEMAAVGVKNGAPQKYSWSVAFGLTVTLIWLYVEILRIVAILRGND
+>KD337_NAFOICDF_02375
+MANPVMNSNNFQQQMH-AGQQQPGWYQNA--APQAPSGQQQSPYGQSQAYGAQQAAQQAA
+FQQNMEQAFRAPAAGAAETGRMTYNDIVGKTALMLTLVVIGGAIGWTMPALMLIGAIVGL
+VLGLVNSFKREPSPVLIMGYALAEGLFLGGISASFEAAYGGIVLQAVLGTVSVFAVMLAL
+YTSGKFRPTPRMTKIVMAAMIGYMLFMLLNLVLTFTGIANLRLGAMGLIVGAVAVLLAAY
+SLTMDFEMGAQGVKNGVPQKYSWTVAFGLTVTLIWLYVEILRILSILRSDD
+>SA211_MHAAABBN_00174
+MANPVMNSQNFQQQMQGGGQAQPGWYQGGQQSAQSPYGQQQSPYGQAQAFGAGQAAQQYA
+HQQSMEDAFRAPSAGPEQTGRMTFNDVVGKTGLMLVLVVVAGAVGWFSPGLMIIGAIAGL
+VLGLVNAFKREPSPVLIMAYAVAQGLFLGGISAFFEGAYPGIVVQAVLGTFSVFAVMLAL
+YTSGKFRPTPRMTKIVMGAMIGYLVFMLVNLVLTWTGIGNMREGGLGLIIGAIAVLLAAY
+SLTMDFEMAAVGVKNGAPQKYSWSVAFGLTVTLIWLYIEILRIVAILRGND
+>TT9_LFPAFLNI_00456
+MANPVMNSQNFQQQMQGGGQAQPGWYQGGQQSAQSPYGQQQSPYGQAQAFGAGQAAQQYA
+HQQSMEDAFRAPSAGPEQTGRMTFNDVVGKTGLMLVLVVVAGAVGWFSPGLMIIGAIAGL
+VLGLVNAFKREPSPVLIMAYAVAQGLFLGGISAFFEGAYPGIVVQAVLGTFSVFAVMLAL
+YTSGKFRPTPRMTKIVMGAMIGYLVFMLVNLVLTWTGIGNMREGGLGLIIGAIAVLLAAY
+SLTMDFEMAAVGVKNGAPQKYSWSVAFGLTVTLIWLYIEILRIVAILRGND
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001682.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001682.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9068eef2b0e996014b9b88112f4f91c04d18d49d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001682.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02507
+------------------------------------------------------------
+------------------------------------------------------------
+-------MAARRRAPLPDPVPARQITGRSLLVVAVLLVAAVLVAPTLRAFLNQQLEIAAA
+EEEIAAMQAQREDYEERIRLWDDPGYVTQQARERLQLVMPGETLYSVTGVPEEAPR----
+--DPRPEAPAGEPVNTRLPWAEGLWDSAVRAGPRVSPGPRPDPGSGPARP
+>KBS0714_MOLHKGIG_00449
+MSPRRPRVPRVDPTTGAPRRTAVAAPAAPTTASPKADAPTPTPEATTPTPAATGAEVIDL
+HSVQERRQAGHHGHLDGHPDADRADTAP----AAPASPSAPPRRTAPARPAGRRTRPAPR
+RAASAAATAARRRAPLPEPVPARQITGRSLIVVAVLLVAAVLVAPTLRAFLNQQLEISAA
+REEIATMQAQREDYERRIQLWDDPAYVTQQARERLELVMPGETLYSVTGRPSETETETDT
+EAEDTPAARADEVVNTRLPWAEGLWDSAVRAGLE----------------
+>KD337_NAFOICDF_02379
+MSARRPRVPRVAVPDTAPER-ATPAVVEPVVVEPAPVAPA-APEAPAP-PAPPGPQVIDL
+QEAAQRRR----------------------HEATRPSPRPDAERAAAQRVA--RLREERR
+RATVREHAAARRRVPLPEPVPARQLTGRSLVVLAVLIIAAVLVAPTARLMLNQQLEISAA
+QQDIAEQQRRKAEYEEQIRRWDDPGYVAQQARQRLELVMPGETLYTVTGLPDESGA----
+--VPADSVP-QEKVNDRLPWVEGLWDSAVRAATE----------------
+>SA211_MHAAABBN_00170
+MSPRRPRVPRVDPTTGAPRRTAVAAPAAPTTAFPEADTPTPTPAAPTPAPAATDAEVIDL
+QSIQERRQA-------GHPDVDRADTAPAGDTAAPASPSAPPRRTAPARPAGRRPRPAPR
+GAASAAATAARRRAPLPEPVPARQITGRSLIVVAVLLVAAVLVAPTLRAFLNQQLEISAA
+REEIATMQAQREDYERRIQLWDDPAYVTQQARERLELVMPGETLYSVTGRPSETDTATET
+--EDTPAAGADEVVNTRLPWAEGLWDSAVRAGLE----------------
+>TT9_LFPAFLNI_00452
+MSPRRPRVPRVDPTTGAPRRTAVAAPAAPTTAFPEADTPTPTPAAPTPAPAATDAEVIDL
+QSVQERRQAGHPGHLDGHPDADRADTAPAGDTAAPASPSAPPRRTAPARPAGRRPRPAPR
+RAASAAATAARRRAPLPEPVPARQITGRSLIVVAVLLVAAVLVAPTLRAFLNQQLEISAA
+REEIATMQAQREDYERRIQLWDDPAYVTQQARERLELVMPGETLYSVTGRPSETDTATET
+--EDTPAAGADEVVNTRLPWAEGLWDSAVRAGLE----------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001687.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001687.fa
new file mode 100644
index 0000000000000000000000000000000000000000..35d54ede8878c0bd5f618a10c81845c3dde2ccc7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001687.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02514
+MA-AEGTTTAP-------GVDWDRLRRAALAATEHAYVPYSGFRVGAAALTEDGRLVTGC
+NIENASYGLTLCAECALLADLRMGGGGRLAAFVCVDGQGVLTMPCGRCRQLLHEFRAPDM
+VLLTPAGERTMGQVLPDAFGPEDLERAAAR
+>KBS0714_MOLHKGIG_00443
+MADGQHTTTAP-------RVDWDRLRAAALAATEHAYVPYSGFRVGAAALTDDGRLVSGC
+NIENASYGLTLCAECALLAELRMGGGGRLAAFVCVDGAGVLTMPCGRCRQLLYEFRAPGL
+VLLTPAGERGIDAVLPDAFGPADLERADRP
+>KD337_NAFOICDF_02385
+MT---GTTTPPACAAPVAEADWDRLRAAAADAMERAYAPYSGFRVGAAALTEDGRLVSGC
+NVENAAYGVALCAECALVGQLHMTGGGRLRAFLCVGGDGRLITPCGRCRQLLWEFRAPGL
+AVLTAAGVTTVEALLPEAFGPDALE----A
+>SA211_MHAAABBN_00164
+MADGQHTTTAP-------RVDWDRLRAAALAATEHAYVPYSGFRVGAAALTDDGRLVAGC
+NIENASYGLTLCAECALLADLRMGGGGRLAAFVCVDGAGVLTMPCGRCRQLLYEFRAPGL
+VLLTPAGERGIDAVLPDAFGPADLERADRP
+>TT9_LFPAFLNI_00446
+MADGQHTTTAP-------RVDWDRLRAAALAATEHAYVPYSGFRVGAAALTDDGRLVSGC
+NIENASYGLTLCAECALLADLRMGGGGRLAAFVCVDGDGVLTMPCGRCRQLLYEFRAPGL
+VLLTPAGERGIDAVLPDAFGPADLERADRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001693.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001693.fa
new file mode 100644
index 0000000000000000000000000000000000000000..feb1da470caa9f03a3fb6ebba6f9b5c9a8e892fc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001693.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02520
+MSTDPNLTEAGREDAPGSALSRFHVVIPAGGVGTRLWPLSRAAAPKFLHDLTGSGQTLIR
+ATWDRLAPLAAGMLVVTGAAHRDAVCGQLPDLDTADLVLEPSPKDSAAAIGLAAAILSLR
+DPDTIMGSFAADQVIAPVEVFQDAVRQAVETAATGRIVTIGIEPTHAATGFGYIRRGRRL
+AVPGAPDAHDVAAFVEKPDLKVAQQYVKSGRYLWNAGMFVAPVGLMLAHLEENEPALHAG
+LMEIAHAWETERRDEVMERVWPELTKTAIDYAVAEPAAAVGDVAVIPGAFTWDDVGDFAA
+IARLNPVKDASGITVIGDTPRVYSDDASGVVVTDTRRVIALIGIEDVVVVDTEDALLVTT
+TDHAQEVKKAVEALKAEGVDEVL
+>KBS0714_MOLHKGIG_00437
+MSTDPNLTDAPREAAPGTALSRFHAVIPAGGVGTRLWPLSRAAAPKFLHDLTGSGQTLIR
+ATWDRLAPLAAGMLVVTGEAHREAVCTQLPALAETDLVLEPSPKDSAAAIGLAAAILSLR
+DPDTIMGSFAADQVISPVEVFQDAVRQAVETAATGRIVTIGIEPTHAATGFGYIRRGRRL
+RVAGAPDAHDVAAFVEKPDLKVAQQYVKSGRYLWNAGMFVAPVGLMLAHLEENEPALHAG
+LMEIARAWETPERDEVMARVWPELTKTAIDYAVAEPAAAVGDVAVIPGSFTWDDVGDFAA
+IARLNPVRDASGITVIGDTPRVYSDDASGVVVTDTKRVIALIGIEDVVVVDTEDALLVTT
+TEHAQEVKKAVEALKAEGVDEVL
+>KD337_NAFOICDF_02391
+MSIDPTAAQSAPSQPSASALERFHAVIPAGGVGTRLWPLSRAAAPKFLHDLTGSGQTLIR
+ATWDRLAPLAGGIMVVTGRAHEDAVCRQLPDVGAADLVLEPEPKDSAAAIGLAAAILWLR
+DSDTIMGSFAADQVIGPVDVFQDAVRQAVETAATGRIVTIGITPTHAATGFGYIRTGRRL
+SVAGAPDAHDVAAFVEKPDQRVAERYVASGRYLWNAGMFVAPVALMLQHLEANEPELHAG
+LTEIARAWETPERDAVMARVWPGLKKTAIDYAVAEPAATAGDVAVIPGAFTWDDVGDFAA
+IARLNPVKDGSGVTVIGDTPRVYSDSATGVVVTDTSRVIALIGVEDVVVVDTGDALLVTT
+TEHAQDVKRTVESLKAQGADDVL
+>SA211_MHAAABBN_00158
+MSTDPNLTDAPREAAPGTALSRFHAVIPAGGVGTRLWPLSRAAAPKFLHDLTGSGQTLIR
+ATWDRLAPLAAGMLVVTGEAHREAVCMQLPALAETDLVLEPSPKDSAAAIGLAATILSLR
+DPDTIMGSFAADQVISPVEVFQDAVRQAVETAATGRIVTIGIEPTHAATGFGYIRRGRRL
+RVAGAPDAHDVAAFVEKPDLKVAQQYVKSGRYLWNAGMFVAPVGLMLAHLEENEPALHAG
+LMEIARAWETPERDEVMARVWPELTKTAIDYAVAEPAAAVGDVAVIPGSFTWDDVGDFAA
+IARLNPVKDASGITVIGDTPRVYSDDASGVVVTDTKRVIALIGIEDVVVVDTEDALLVTT
+TEHAQEVKKAVEALKAEGVDEVL
+>TT9_LFPAFLNI_00440
+MSTDPNLTDAPREAAPGTALSRFHAVIPAGGVGTRLWPLSRAAAPKFLHDLTGSGQTLIR
+ATWDRLAPLAAGMLVVTGGAHREAVCMQLPDLAETDLVLEPSPKDSAAAIGLAAAILSLR
+DPDTIMGSFAADQVISPVEVFQDAVRQAVETAATGRIVTIGIEPTHAATGFGYIRRGRRL
+RVAGAPDAHDVAAFVEKPDLKVAQQYVKSGRYLWNAGMFVAPVGLMLAHLEENEPALHAG
+LMQIARAWETPERDEVMARVWPELTKTAIDYAVAEPAAAVGDVAVIPGSFTWDDVGDFAA
+IARLNPVKDASGITVIGDTPRVYSDDASGVVVTDTKRVIALIGIEDVVVVDTEDALLVTT
+TEHAQEVKKAVEALKAEGVDEVL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001697.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001697.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3ad67b219cd8de8e31ebc5f978e42d3ed71d9c58
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001697.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02524
+MSHAATETEAPVAQD-QTQAAGGGMGAIESFDIVLKVRRYLPESSEESYWDEWRLTMYGT
+DRVLDALHKVKWDHDGTLSFRRSCAHGICGSDAMRINGRNRLACKTLLKDLDLSKPILVE
+PIKGLPVEKDLIVDMDPFFQSYREVMPFLVAEGHEPSKERYQSQADRARYDDTTKCILCA
+ACTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDDAGDMRLEILNDKEGVWRCRTTFNCTD
+ACPRGIQVTKAIAEVKQAILARQF
+>KBS0714_MOLHKGIG_00433
+MSHSATETEAPVAQA-QTQSAGGGAGEVESFDIVLKVRRYLPESSEESYWDEWRLTMYGT
+DRVLDALHKVKWDHDGTLSFRRSCAHGVCGSDAMRINGRNRLACKTLLKDLDLSKPILVE
+PIKGLPVEKDLIVDMDPFFQSYREIMPFLVAEGHAPTKERYQSQADRAIYDDTTKCILCA
+ACTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDEAGDMRLEILNDKEGVWRCRTTFNCTD
+ACPRGIQVTKAISEVKRAILARQF
+>KD337_NAFOICDF_02395
+MSHAATETQAPAAPAQQTQGQDGGMGEIESFDITLRVRRFLPESSEESYWDEWRLTMFGT
+DRVLDALHKVKWDHDGTLSFRRSCAHGVCGSDAMRINGRNRLACKTLLKDLDLSQPITVE
+PIKGLPVEKDLIVDMEPFFQSYREVMPFLVAKGHEPSKERYQSQADRAIYDDTTKCILCA
+ACTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDDAGDMRLEILNDKEGVWRCRTTFNCTE
+ACPRGIQVTKAIAEVKQAILARSF
+>SA211_MHAAABBN_00154
+MSHSATETEAPVAQA-QTQSAGGGAGEVESFDIVLKVRRYLPESSEESYWDEWRLTMYGT
+DRVLDALHKVKWDHDGTLSFRRSCAHGVCGSDAMRINGRNRLACKTLLKDLDLSKPILVE
+PIKGLPVEKDLIVDMDPFFQSYREIMPFLVAEGHAPTKERYQSQADRAIYDDTTKCILCA
+ACTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDEAGDMRLEILNDKEGVWRCRTTFNCTD
+ACPRGIQVTKAISEVKQAILARQF
+>TT9_LFPAFLNI_00436
+MSHSATETEAPVAQA-QTQSAGGGAGEVESFDIVLKVRRYLPESSEESYWDEWRLTMYGT
+DRVLDALHKVKWDHDGTLSFRRSCAHGVCGSDAMRINGRNRLACKTLLKDLDLSKPILVE
+PIKGLPVEKDLIVDMDPFFQSYREIMPFLVAEGHAPTKERYQSQADRAIYDDTTKCILCA
+ACTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDEAGDMRLEILNDKEGVWRCRTTFNCTD
+ACPRGIQVTKAISEVKQAILARQF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001702.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001702.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d2916e5557a8d30e23d96818ab99b1cd949b4795
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001702.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02530
+--MKKNSVQDVLAQDVSATAHLAGASDRHRVLSGMQPSADSLHLGNYLGALTNWVRTQDD
+FEAFFFIPDLHAITVPQDPAALAQRTRVAAAQFIAAGIDPERSTLFVQSQVPEHAQLAWV
+LTCMTGMGEAMRMTQFKDKSAKQGAEAAGVGLLAYPMLMAADILLYQPHGVPVGDDQRQH
+VELTRDLAQRFNHRHGETFVVPTGFYPETGARIYDLQDPTSKMSKSAASPNGLINVMDDP
+KRTAKKIKSAVTDDGTEVRFDREAKPGVSNLLTILSAMTDVPVAELEGRYVGRMYGHLKV
+DVADAVVERLAPVKARTEELLADPAELDRILAAGAAKARAVATPVLEDVYAKVGFLPPLR
+>KBS0714_MOLHKGIG_00427
+MTMKKNSVQDVLAQDAAATAHLAGASARHRVLSGMQPSADSLHLGNYLGALVNWERTQAD
+FEAFFFIPDLHAITVPQDPAALAERTRVAAAQFIAGGIDPERSTLFVQSQVPEHAQLAWV
+LTCMTGMGEAMRMTQFKDKSAKQGADAAGVGLLAYPMLMAADILLYQPHGVPVGDDQRQH
+VELTRDLAQRFNHRYGETFVVPTGFYPETGARIYDLQDPTSKMSKSAASPNGLINILEEP
+KKTAKKIKSAVTDDGTEVRFDREAKPGVSNLLTILSAVSGTPIPQLEEEFVGKMYGHLKV
+AVADAVVERLAPVRERALALLDDPAELDRILAAGAEKARAVATPVLEDVYAKVGFLPPLR
+>KD337_NAFOICDF_02400
+MTMKKNSVQDVLAQDAAATAHLAGASARHRVLSGMQPSADSLHLGNYLGALVNWERTQAD
+FEAFFFIPDLHAITVPQDPAALAERTRVAAAQFIAGGIDPERSTLFVQSQVPEHAQLAWV
+LTCMTGMGEAMRMTQFKDKSAKQGADAAGVGLLAYPMLMAADILLYQPHGVPVGDDQRQH
+VELTRDLAQRFNHRYGETFVVPTGFYPETGARIYDLQDPTSKMSKSAASPNGLINILEEP
+KKTAKKIKSAVTDDGTEVRFDREAKPGVSNLLTILSAVSDRPIPELEAEFEGKMYGHLKV
+AVADAVVERLAPVRERALGLLDDPAELDRILAAGAAKAREVATPVLEDVYARVGFLRPLR
+>SA211_MHAAABBN_00148
+MTMKKNSVQDVLAQDAAATAHLPGASARHRVLSGMQPSADSLHLGNYLGALVNWERTQAD
+FEAFFFIPDLHAITVPQDPAALAERTRVAAAQFIAGGIDPERSTLFVQSQVPEHAQLAWV
+LTCMTGMGEAMRMTQFKDKSAKQGADAAGVGLLAYPMLMAADILLYQPHGVPVGDDQRQH
+VELTRDLAQRFNHRYGETFVVPTGFYPETGARIYDLQDPTSKMSKSAASPNGLINILEEP
+KKTAKKIKSAVTDDGTEVRFDREAKPGVSNLLTILAAVSGTPIPQLEEEFVGKMYGHLKV
+AVADAVVERLAPVRERALELLADPAELDRILASGAEKARAVATPVLEDVYAKVGFLPPLR
+>TT9_LFPAFLNI_00430
+MTMKKNSVQDVLAQDAAATAHLAGASARHRVLSGMQPSADSLHLGNYLGALVNWERTQAD
+FEAFFFIPDLHAITVPQDPAALAERTRVAAAQFIAGGIDPERSTLFVQSQVPEHAQLAWV
+LTCMTGMGEAMRMTQFKDKSAKQGADAAGVGLLAYPMLMAADILLYQPHGVPVGDDQRQH
+VELTRDLAQRFNHRYGETFVVPTGFYPETGARIYDLQDPTSKMSKSAASPNGLINILEEP
+KKTAKKIKSAVTDDGTEVRFDREAKPGVSNLLTILSAVSGTPIPQLEEEFVGKMYGHLKV
+AVADAVVERLVPVRERALALLADPAELDRILAAGAEKARAVATPVLEDVYAKVGFLPPLR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001703.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001703.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3ac2cbdec06d6dfa257417c556119fd83685a5f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001703.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02531
+MTVLPEKDPVTGKYPEPAEGEPVVHANAGAPKEDGALRVATVNVNGIRASHRKGMREWFA
+GRGVDVLTLQEVRAPADITAKLVREVVGEDWDEVHLADAEAAAKGRAGVAIASRFPIEAV
+RTGISDADAYFDDAGRWIEADLRLPDGSALTVVSAYVHSGEADTPKQVDKYRFLDEMVRR
+LGELSAGPDHALVTGDLNVGHTELDIKNWKGNQKKAGFLPEERAYFDRFFGELGFTDVHR
+SLAGQVPGPYTWWSMRGKAFDNDAGWRIDYQMATAALAEKASSAVVDRAPSWGTRFSDHA
+PLVVDYRF
+>KBS0714_MOLHKGIG_00426
+MTALPEKDPVTGKYPEPAEGEPVVHANAGAPKADGAVRVATVNVNGIRASHRKGMREWFA
+GRGVDVLTLQEVRAPADVTAQLVREIVGEDWDEVHLADAVAAAKGRAGVAIASRFPLGEV
+RTGIADADGYFDDAGRWIEADLRLPDGSPLTVVSAYVHSGEVDTPKQVDKYRFLDEMVRR
+LSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFGELGFTDVHR
+ALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATAGLAERATTAVVDRAPSWGTRFSDHA
+PLVVDYQF
+>KD337_NAFOICDF_02401
+MT-VPQKDPVTGKHPGPAAGEPVVHANAGAPKPEGALRVATVNVNGIRASHRKGMGGWFA
+GRGVDVLTLQEVRAPQEIAHALVRDVVGDAWDEVHVADVEAASKGRAGVAVASRFPFEDV
+RTGIGGAEDHAADAGRWIEADVRLPDGSLLTVVSAYVHTGGVDTPKQVDKYRLLDEMVRR
+LPELAADGRHVLVTGDLNVGHTERDIKNWRGNVKKAGFLPEERAYFDRFFGELGYVDVHR
+TLAGDVPGPYTWWSMRGQAFDNDAGWRIDYQMATPELAARATSAVVDRAPSWGTRFSDHA
+PLVVDYQF
+>SA211_MHAAABBN_00147
+MTALPEKDPVTGKYPEPAEGEPVVHANAGAPKADGAVRVATVNVNGIRASHRKGMREWFA
+GRGVDVLTLQEVRAPADVTAQLVREIVGEDWDEVHLADAVAAAKGRAGVAIASRFPLGEV
+RTGIADADGYFDDAGRWIEADLRLPDGSPLTVVSAYVHSGEVDTPKQEDKYRFLDEMVRR
+LSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFGELGFTDVHR
+ALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATAGLAERATTAVVDRAPSWGTRFSDHA
+PLVVDYQF
+>TT9_LFPAFLNI_00429
+MTALPEKDPVTGKYPEPAEGEPVVHAHAGAPKADGAVRVATVNVNGIRASHRKGMREWFA
+GRGVDVLTLQEVRAPADVTAQLVREIVGEDWDEVHLADAVAAAKGRAGVAIASRFPLGEV
+RTGIADADGYFDDAGRWIEADLRLPDGSPLTVVSAYVHSGEVDTPKQVDKYRFLDEMVRR
+LSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFGELGFTDVHR
+ALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATAGLAERATTAVVDRAPSWGTRFSDHA
+PLVVDYQF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001704.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001704.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e2f3683ab2ae0cfb3bc3515b3ceff320f5dee827
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001704.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02532
+MSQPLTTGSGETRRGPRAGLRVGSVGFAAMIVILIVAIMFAANQNDVIGWLVVAVAAGWL
+VFALVVFLQMRRGVQAAGRKVDAAMENARADVAALRGQGA-AAAPQAAAHAPAGDPMRDT
+KLDHSFKIAQVQVKVVREQLAAGGAMDREMVDRALETIDITAANARDMIKESRGQGGSEG
+PVSGTVIG
+>KBS0714_MOLHKGIG_00425
+MSQSLTPGPDGARRGPRAGLRVGSLGFVAMIVILIVAIIFAANQNDVIGWLVVAVAAGWL
+VFAVVVYLQMRRGVRAAGRKVDTAMQNARADVAALRGREADAAAPAVAPPAPAADPLRDT
+KLDHSFKIAQVQVRVVREQLAAGAGMDREMVDRALETIDITASNARDMIKESRA-GGAEG
+PVSGTVIG
+>KD337_NAFOICDF_02402
+MPQSIPSGSAGTRPA-RAGLTVGSTGFAVMVAVLLVAIVFAANANDLIGWLVVAIAAGWL
+VFAVVVFLQMRKGVREAGRKVDTAMQNARADVAALRAPQ--QPAPAAAVPAAAGDPMRDT
+KLEHSFKICQVQARVITQQLDAEGPLDREMVDRALETITITAQNARDMIKESA--RDAEG
+PVSGTVVS
+>SA211_MHAAABBN_00146
+MSQSLTPGPDGARRGPRAGLRVGSLGFVAMIVILIVAIIFAANQNDVIGWLVVAVAAGWL
+VFAVVVYLQMRRGVRAAGRKVDTAMQNARADVAALRGREADAAAPAVAPPAPAADPLRDT
+KLDHSFKIAQVQVRVVREQLAAGAGMDREMVDRALETIDITASNARDMIKESRA-GGAEG
+PVSGTVIG
+>TT9_LFPAFLNI_00428
+MSQSLTPGPDGARRGPRAGLRVGSLGFVAMIVILIVAIIFAANQNDVIGWLVVAVAAGWL
+VFAVVVYLQMRRGVQAAGRKVDTAMQNARADVAALRGRDADAAAPAVAPSAPAADPLRDT
+KLDHSFKIAQVQVRVVREQLAAGESMDREMVDRALETIDITASNARDMIKESRA-GGAEG
+PVIG----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001705.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001705.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7c8be2c3b1f0d207d097fe08f67b4a36a60ee96c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001705.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02533
+MGGPVAATARRPANRRAGPVVVRAYPEAVTPRPRSADGDAAPAAFTPEQRRILTALLMPLFLALMSVSVVNVALPAIESG
+LHATSADLQWVLAGYTLTFGTVLVASGRAGDLWGRKSLFLVGIGLYVAGALVSGFAADPLMLNAGRLVTGVGAGVFNPQV
+VGFIQSNFSGRARGRAYGLFGTVIGLGVAVGPMLGGLLLGALGPEWGWRSTFLMNAPVGLAAIVMGVLWLPAPTRVHGLP
+-AAPGPRGIAALDPVGALLLGLGAVCLMVPFIVPGTAGLLVLAAALVTAWWLWEKRVKARASATGVQPMVDPALFRRLSF
+TIGALESTIYLATMPAVFAIVAIFLQRGMGFTPLEAGLVGLPGAVVVASLSPWVGSMVQRRGPVLVLLGALVGLVSLGVL
+ALAFERSAAGAWSPWIVGVGLIVQSASQALLLTSTQVLMMDDVAGHEAGAAGGVAQTAQRLGTALGLSVVTGAFFAALAG
+AAAEGAGPPSAAAYAHAASTAMGMVAVCWALTAVVAALDVVRRRRAVRAA
+>KBS0714_MOLHKGIG_00424
+M----------------------------TPRPPHP-ADPASGAFTPDQRRILTALLMPLFLALMSVSVVNVALPAIESG
+LDATSADLQWVLAGYTLTFGTVLVAAGRAGDLWGRKNLFLAGITLYMLGSLLSGLAGDTLLLNAGRLLTGLGAGVFNPQV
+IGFIQSNFHGRARGRAYGLFGTVVGLGVAVGPLLGGLFLGAFGPEWGWRSTFLMNVPVGLAAVAMGALWLPPPTRVHGLP
+-PAPGPRGIAALDPVGALLLGAGGVSLMVPFIVPGTAWLLVLAAALVTAWWLWEKRVKARASATGVQPMVDPALFRRPSF
+TIGALESTIYLATMPAVFAIVAIFLQRGMGFTPLEAGLVGLPGAVVVASLSPWVGSMVQRRGPVLVLLGALVGLVSLGVL
+ALAFERSAAGAWSPWIVGVGLIVQSASQALLLTSTQVLMMDDVAGHEAGAAGGVAQTAQRLGTALGLSVVTGAFFAALAG
+AAGESAGPPSAAAYAHAASTAMGMVAVCWALTAAVAALDVVRRRRAARAA
+>KD337_NAFOICDF_02403
+M---------------------------TLPSP----AAAESGAFTADQRRILTVLLIPLFLALMSVSVVNVALPSIEGG
+LGASSADLQWVLSGYTLTFGMVLVAAGRAGDLWGRRPLFLAGIALYVLGSLLSGLAPDPLWLNAGRLLTGLGAGVFNPQT
+IGFIQSHFTGRARGRAYGLFGMVVGLGVAVGPLLGGLLLGALGPDWGWRSTFLMNVPVGVLAIVMATAWLSPDTRVKGAA
+GRSGGPRGIAALDPVGALLLGGASLCLMVPFIAPGTWALLAGAAVLGVGWWLWELRVKRRAAATGVEPMVDPALFRRASF
+SIGAAESTIFLSSMPAVFAVTAVFLQQGMGFSPLASGLATLPGAVVQAVASPWAGSKVPSQGARMVFGGGVVGLASLAIL
+ALAFERSAAGAWSPWIVGAALAVMAVSQALILTTTQVLMMEDVAGHEAGAAGGVAQTAQRMGTALGLSVVMGAFYAALAG
+AAGPG-GAPSAAGFAHAASAAVLMVGACWLVTTAIAAADLVRRRRTAR--
+>SA211_MHAAABBN_00145
+M----------------------------TPRPPHP-ADPASGAFTPDQRRILTALLMPLFLALMSVSVVNVALPAIESG
+LDATSADLQWVLAGYTLTFGTVLVAAGRAGDLWGRKNLFLAGITLYMLGSLLSGLAGDTLLLNAGRLLTGLGAGVFNPQV
+IGFIQSNFHGRARGRAYGLFGTVVGLGVAVGPLLGGLFLGAFGPEWGWRSTFLMNVPVGLAAVAMGALWLPPPTRVHGLP
+-PAPGPRGIAALDPVGALLLGAGGVSLMVPFIVPGTAWLLVLAAALVTAWWLWEKRVKARASATGVQPMVDPALFRRPSF
+TIGALESTIYLATMPAVFAIVAIFLQRGMGFTPLEAGLVGLPGAVVVASLSPWVGSMVQRRGPVLVLLGALVGLVSLGVL
+ALAFERSAAGAWSPWIVGVGLIVQSASQALLLTSTQVLMMDDVAGHEAGAAGGVAQTAQRLGTALGLSVVTGAFFAALAG
+AAAESAGPPSAAAYAHAASTAMGMVAVCWALTAVVAALDVVRRRRAVRAA
+>TT9_LFPAFLNI_00427
+---------------------------------------------------------MPLFLALMSVSVVNVALPAIESG
+LDATSADLQWVLAGYTLTFGTVLVAAGRAGDLWGRKSLFLAGITLYMLGSLLSGLAGDTLLLNAGRLLTGLGAGVFNPQV
+IGFIQSNFHGRARGRAYGLFGTVVGLGVAVGPLLGGLFLGAFGPEWGWRSTFLMNVPVGLAAVAMGALWLPPPTRVHGLP
+-PAPGPRGIAALDPVGALLLGAGGVSLMVPFIVPGTAWLLVLAAALVTAWWLWEKRVKARAWATGVQPMVDPALFRRPSF
+TIGALESTIYLATMPAVFAIVAIFLQRGMGFTPLEAGLVGLPGAVVVASLSPWVGSMVQRRGPVLVLLGALVGLVSLGVL
+ALAFERSAAGAWSPWIVGVGLIVQSASQALLLTSTQVLMMDDVAGHEAGAAGGVAQTAQRLGTALGLSVVTGAFFAALAG
+AAAESAGSPSAAAYAHAASTAMGMVAVCWALTAVVAALDVVRRRRAARAA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001706.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001706.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5c2cfda492d512ec6be99b7b08f4a026343818d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001706.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02536
+-------MSHATPASPSPSQSPADAPDAGPAPVIRARGLRKQYGDFHAVKGIDLDVRPGE
+CFGLLGPNGAGKSTTMRMLAGTSQRTAGELSILGIDPEEDGPAVRARLGVVPQQDNLDEE
+LTARENILIYGRYFGLPYSYLRPKADELLAFAQLTEKADAKVTDLSGGMKRRLVIARALV
+NEPALFLLDEPTTGLDPQARHILWDRLYRLKERGTTLLLTTHYMDEAEQLCDRLVVVDGG
+QIMAAGTPAALIREHAAREVLEARFGADRNEAAARTVQARAGDGVVHRVEVLPDRVLVYA
+AHADDLHAVVQGLVDDGALPAPVTTLTRRASLEDVFLILTGRTLVD
+>KBS0714_MOLHKGIG_00422
+-------MSHTT-----LHASP------GDASVIRARGLRKQYGEFHAVKGIDLDVRPGE
+CFGLLGPNGAGKSTTMRMLAGTSQRTAGELTILGIDPEEDGPAVRARLGVVPQQDNLDEE
+LTARENILIYGRYFGLPYSYLRPKAEELLAFAQLTEKADAKVTDLSGGMKRRLVIARALV
+NEPALFLLDEPTTGLDPQARHILWDRLYRLKERGTTLLLTTHHMDEAEQLCDRLVVVDGG
+EIMAAGTPAELIREHASREVLEARFGADRNEAAARTVQAHAGDGVVHRVEVLPDRVLVYA
+RRADDLHDVVQRLVDEGALPAPVTTLTRRASLEDVFLILTGRTLVD
+>KD337_NAFOICDF_02406
+-------MTRTT-----SSPSPAAPAGGGAAPVILARGLRKQYGDFHAVQGIDLDVRPGE
+CFGLLGPNGAGKSTTMRMLAGTSQRTGGELRILGIDPEEDGPAVRARLGVVPQQDNLDED
+LTARENILIYGRYFGLPYSYLRPKAEELLAFAQLTDKADAKVTDLSGGMKRRLVIARALV
+NEPALFLLDEPTTGLDPQARHTLWDRLYRLKERGTTLLLTTHYMDEAEQLCDRLVVVDAG
+RIMAAGTPASLIREHASREVLEARFGTDRNATAARLLRESLPG--LHRLEVLPDRVLLYT
+EHADTLQQDLDRLVAEGHVTAPVTQLTRRASLEDVFLILTGRTLVD
+>SA211_MHAAABBN_00143
+-------MSHTT-----LHASP------GPASVIRARGLRKQYGEFHAVKGIDLDVRPGE
+CFGLLGPNGAGKSTTMRMLAGTSQRTAGELTILGIDPEEDGPAVRARLGVVPQQDNLDEE
+LTARENILIYGRYFGLPYSYLRPKAEELLAFAQLTEKADAKVTDLSGGMKRRLVIARALV
+NEPALFLLDEPTTGLDPQARHILWDRLYRLKERGTTLLLTTHHMDEAEQLCDRLVVVDGG
+EIMAAGTPAELIREHASREVLEARFGADRNEAAARTVQAHAGDGVVHRVEVLPDRVLVYA
+RRADDLHDVVQRLVDEGALPAPATTLTRRASLEDVFLILTGRTLVD
+>TT9_LFPAFLNI_00425
+MRLCCRLVSPTT-----LHAPP------GPASVIRARGLRKQYGEFHAVKGIDLDVRPGE
+CFGLLGPNGAGKSTTMRMLAGTSQRTAGELTILGIDPEEDGPAVRARLGVVPQQDNLDEE
+LTARENILIYGRYFGLPYSYLRPKAEELLAFAQLTEKADAKVTDLSGGMKRRLVIARALV
+NEPALFLLDEPTTGLDPQARHILWDRLYRLKERGTTLLLTTHHMDEAEQLCDRLVVVDGG
+EIMAAGTPAELIREHASREVLEARFGADRNEAAARTVQAHAGDGVVHRVEVLPDRVLVYA
+RRADDLHDVVQRLVDEGALPAPATTLTRRASLEDVFLILTGRTLVD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001710.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001710.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5c5655176cdf2e0bf4623d6e81bb17f80df61d23
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001710.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02540
+MTENQKTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLVETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSK
+YTKALVFQPGAKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTDEGNLDVVGNNTPVFFLRDPMKFTHFIRSQKRLPDS
+GLRDATMQWDFWTNTPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNFSNEEAEAMA
+GKNADYHRQDLFESIAKGDYPKWDLYIQAIPYEEGKTYRFNPFDLTKTISKKDYPRIKVGTLTLNRNPENHFAQIESAAF
+NPGNMVPGVGLSPDRMLLGRSFAYHDAQLYRVGAHVNQLPVNRPKNEVHNYAFDGQMWYDHTGSRSTYAPNSNGDSWSDE
+TGPVDDGWEADGTLTREAQALRKDDDDFGQAGTLVREVFTDAERDAFVETVAGALDGVREDVQARAFQYWKNVDATIGQR
+IEDEVNKGQGDDIPGAAGGGEARI
+>KBS0714_MOLHKGIG_00419
+MTEYQKTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSK
+YTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYSEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDS
+GLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIA
+GENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISKKDYPRIKVGTLTLNRNPENHFAQIESAAF
+SPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFDGQMWYDHTGDRSTYAPNSNGDSWSDE
+TGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSAQEREDFVETVAGALKGVRQDVQARAFEYWKNVDTAIGQR
+IEDEVKRHEGDGIPGVEAGGEARI
+>KD337_NAFOICDF_02409
+MTEYQKTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSK
+YTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYSEEGNYDIVGNNTPVFFLRDPMKFTHFIRSQKRLPDS
+GLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIA
+GENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAF
+SPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVNNYAFDGQMWYDHTGDRSTYAPNSNGDSWSDE
+TGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQR
+IEDEVKRHEGDGIPGVEAGGEARI
+>SA211_MHAAABBN_00140
+MTEYQKKTPHATGSTRQNGAPAISDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSK
+YTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDIVGNNTPIFFLRDPMKFTHFIRSQKRLPDS
+GLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIA
+GENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISKKDYPRIKVGTLTLNRNPENHFAQIESAAF
+SPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDE
+TGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVSGALKGVRQDVQARAFEYWKNVDATIGQR
+IEDEVKRHEGDGIPGVEAGGEARI
+>TT9_LFPAFLNI_00422
+MTEYQKTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSK
+YTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYSEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDS
+GLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIA
+GENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISKKDYPRIKVGTLTLNRNPENHFAQIESAAF
+SPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFDGQMWYDHTGDRSTYAPNSNGDSWSDE
+TGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSAQEREDFVETVAGALKGVRQDVQARAFEYWKNVDTAIGQR
+IEDEVKRHEGDGIPGVEAGGEARI
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001711.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001711.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d597a04b528033b6418042b4429fd34679054d0a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001711.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02543
+MDTATLSPSPTPASGAEHAHVLTLACTNRMGIVHAVSGALLQVGADITESQQYDSPESGD
+FFMRVEFVTPARREEVAAALEPVREEFGMRMGLWDAGHRMRTLVMCSKDGHTLNDLLFQQ
+RAGTLPIEIPVVVSNHLELQSLASFYGVPFIHVPVSADPESRDSKAAAEDRLRGLIAEYD
+IELVVLARYMQILSDELCRDLAGMAINIHHSFLPSFKGARPYHQAHERGVKLIGATAHYV
+TADLDEGPIIAQSVQPVTHAQTAADFVARGRDVEGSTLVQAVRWHAQHRVLADGRRTVVF
+S
+>KBS0714_MOLHKGIG_00417
+MDTAALSPSPSPASGAEHAHVLTLACTNRKGIVHAVTGALLGVEADITESQQYGSPDTGD
+FFMRVEFMTPAVREDIEQALAPVREEFGMRMGLWDAAHRMRTLVMCSKDGHTLNDLLFQQ
+RAGTLPIEIPVVVSNHLDLQPLASFYGVPFIHVPVSKDPSSRDSKEAAEDRLRDLIAQFD
+IELVVLARYMQILSDELCRDLAGMAINIHHSFLPSFKGARPYHQAHERGVKLIGATAHYV
+TADLDEGPIIAQSVQPVTHAQTAADFVARGRDVEGSTLAQAVRWHAQHRVLTDGRRTVVF
+S
+>KD337_NAFOICDF_02411
+MDSTPAAPS---EASARHRIVLTLSCPDRPGIVHAVTGALLEADANITESQQYDSPDTGT
+FFMRVAVDAAATREEVEAAVRPVADRFGMHLQVWDADTPLRALVMCSKDGRTLNDLLFQQ
+RTGSLPVQIPVVVSNHLDLQPLASFYGVPFIHVPLSTDPASRNSKAAAEDRLRELIREYE
+IDVVVLARYMQILSDELCRDLEGMAINIHHSFLPSFKGARPYHQAHERGVKIIGATAHYV
+TADLDEGPIIAQSVHPVTHAQTAEDFVERGRDVEGATLVQAVRWHAEHRVLLDGHRTVVF
+S
+>SA211_MHAAABBN_00138
+MDTAALSPSPSPASGAEHARVLTLACTNRKGIVHAVTGALLGVEADITESQQYDSPDTGD
+FFMRVEFVTPATREDIEQALAPVREEFGMRMGLWDAAQRMRTLVMCSKDGHTLNDLLFQQ
+RAGTLPIEIPVVVSNHLDLQPLASFYGVPFIHVPVSKDPSSRDSKEAAEDRLRDLIAQFD
+IELVVLARYMQILSDELCRDLAGMAINIHHSFLPSFKGARPYHQAHERGVKLIGATAHYV
+TADLDEGPIIAQSVQPVTHAQTAADFVARGRDVEGSTLAQAVRWHAQHRVLADGRRTVVF
+S
+>TT9_LFPAFLNI_00420
+MDTAALSLSPSPASGAEHAHVLTLACTNRKGIVHAVTGALLGVEADITESQQYGSPDTGD
+FFMRVEFMTPAVREDIEQALAPVREEFGMRMGLWDAAHRMRTLVMCSKDGHTLNDLLFQQ
+RAGTLPIEIPVVVSNHLDLQPLASFYGVPFIHVPVSKDPSSRDSKEAAEDRLRDLIAQFD
+IELVVLARYMQILSDELCRDLAGMAINIHHSFLPSFKGARPYHQAHERGVKLIGATAHYV
+TADLDEGPIIAQSVQPVTHAQTAADFVARGRDVEGSTLAQAVRWHAQHRVLTDGRRTVVF
+S
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001714.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001714.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0aaddbe96396b090fdc06136e833216ad374d08a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001714.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_02546
+MSTAVSAPAPE----------------GRAPEGRGPEGRAPRRRGTGKATALWWILTVVI
+GVWCLFPLFSIFATSFKTPADLANGKLLPTQWSTVNYEEIFVGGSRELFLTALRNSIGIT
+VIATIIAVILATLCAYAIARLDFPGKRLVLTVSLMVSMFPVISLVTPLFNMWRTLGLYDT
+WIGLIIPYLSLTLPISIWTLAAFFRQIPWELDQAAQVDGATPLEAFRKVIVPLAAPGVFT
+TAIIAFFIAWNDFVFGISLTSTETARTVPAALAFFTGASQFESPTGAISAAAIIVTIPIV
+ILVLAFQRQIVAGLTNGAVKG
+>KBS0714_MOLHKGIG_00413
+MSTAASAPAPE----------------GRA-----PEGRAPHRRGTGKATALWWILTVVI
+GVWCLFPLFSIFATSFKTPADLANGKLLPTQWSTVNYEEIFVGGSRELFLTALRNSIGIT
+VIATIIAVILATLCAYAIARLDFPGKRLVLTVSLMVSMFPVISLVTPLFNMWRTLGLYDT
+WVGLIIPYLSLTLPISIWTLAAFFRQIPWELDQAAQVDGATPLEAFRKVIVPLAAPGVFT
+TAIIAFFIAWNDFVFGISLTSTETARTVPAALAFFTGASQFESPTGAISAAAIIVTIPIV
+ILVLAFQRQIVAGLTNGAVKG
+>KD337_NAFOICDF_02414
+MSTGNPIPAPQEPVTTRPDGAAERTEAGTAVGDRGVAPTTTRRTRKGSSSWIWWLLAVLI
+GVWCLFPLFSIFATSFKTPADLSNGKLLPTQWSTVNYEEIFVGGSRELFLTALRNSIGIT
+VIATLIAVVLATLCAYAIARLDFPGKRIVLTVSLMVSMFPVISLVTPLFNVWRTLGLYDT
+WLGLIIPYLSLTLPISIWTLAAFFRQIPWELDQAAQVDGATPLQAFRKVIVPLAAPGVFT
+TAIIAFFIAWNDFVFGISLTSTEAARTVPAALAFFTGASQFESPTGAISAAAIVVTIPIV
+ILVLLFQRQIVAGLTNGAVKG
+>SA211_MHAAABBN_00133
+MSTAASAPAPE----------------GRA-----PEGRAPHRRGTGKATALWWILTVVI
+GVWCLFPLFSIFATSFKTPADLANGKLLPTQWSTVNYEEIFVGGSRELFLTALRNSIGIT
+VIATIIAVILATLCAYAIARLDFPGKRIVLTVSLMVSMFPVISLVTPLFNMWRTLGLYDT
+WVGLIIPYLSLTLPISIWTLAAFFRQIPWELDQAAQVDGATPLEAFRKVIVPLAAPGVFT
+TAIIAFFIAWNDFVFGISLTSTETARTVPAALAFFTGASQFESPTGAISAAAIIVTIPIV
+ILVLAFQRQIVAGLTNGAVKG
+>TT9_LFPAFLNI_00416
+MSTAASAPAPE----------------GRA-----PEGRAPHRRGTGKATALWWILTVVI
+GVWCLFPLFSIFATSFKTPADLANGKLLPTQWSTVNYEEIFVGGSRELFLTALRNSIGIT
+VIATIIAVILATLCAYAIARLDFPGKRIVLTVSLMVSMFPVISLVTPLFNMWRTLGLYDT
+WVGLIIPYLSLTLPISIWTLAAFFRQIPWELDQAAQVDGATPLEAFRKVIVPLAAPGVFT
+TAIIAFFIAWNDFVFGISLTSTETARTVPAALAFFTGASQFESPTGAISAAAIIVTIPIV
+ILVLAFQRQIVAGLTNGAVKG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001716.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001716.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7753ee8c3fb91aa78cdfee289541b7aca0e9e133
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001716.fa
@@ -0,0 +1,65 @@
+>AS2_ACLBLIBL_02549
+M-PAPSPHSSRPASVDTAVAP----ALSAALERLGSGLTFVAALPDLEAALDARGAAVVEAPPGTGKTTVVPPALAVRLA
+DHG-----GGRVLVTQPRRVAVRAAWRRLRSAVLDAADRT---SAPDA---LADAAVGYAVRGDAVGGGASAVEFVTPGL
+LLRRLLADPGLDGVDAVVLDEVHERDLDTDVLFALLADLRQLRPELALVAMSATVDAAALAARWARGMGEEAPLPVVSTP
+AVLHPLREEHAPFRGRRLTAEGRVDRAFLDHVAATAARAHAAALDADPTVDALVFVPGVAEVEAVAGRVAARAPDTEVRV
+LHGRQEPADQDAALAGRADPAVPRVVVATAVAESSLTVPGVRLVIDSGLAREPRRDRGRGMAGLVTVQASRAAAGQRAGR
+AARLGPGTVVRCHTAAALGAAPAAPTPALAVVDLAPVALAFAAWGAPGGRGLTLPKDPPADAMAAAERTLASLGAVDTDG
+RITPHGAVLAELPLDPPLGHALLRAAPLTGPRPAAEATAALALDLRASGADLEALVAALRDGRHPESRRWRREADRLERL
+ARRHAHRAPETREPDGPGPEA-ATARRHPAGLVAALASPAWIARRAGEAGAYLLASGTRAALPRNAVVGGLAGQEWLAVA
+EVARAAGDAAGTGAAIRAAAPIDRPLAELAGAGLRRTEDTADWRGDRLTGRRVDRMGALVLAETPAPVAPDAAAQAVRAA
+LAADGLARFDPSGRAERLRRRVHLLHRVLGAPWPDLSDTALPGLDALVDGLAADLAAGRSLAHVDAEALLRGALPWPEAG
+RLDELAPERLPVPSGRGVVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGRELVVLHLLSPAGRPLAVTADLPSFWAG
+PYAQVRAENRGRYPKHPWPEDPAAAEPTARTNRRVR
+>KBS0714_MOLHKGIG_00410
+MVPMPTP-------VDPVTVP---SALSAALGRLSAGLTFAAALPDLEAALDARGAAVVEAPPGTGKTTVVPPALAVRLA
+DHG-----GGRVLVTQPRRVAVRAAWRRLRTAVLAAAADSHPGADPDARARLADAAVGYAVRGDAVGGGASAVEFVTPGL
+LLRRLLADPGLDGVGAVVLDEVHERDLDTDVLFALLADLRQLRPELALVAMSATVDAAALAARWARGMGE-APLPVVSTP
+AVLHPLREEHAPFRGHRLTAEGRVDRAFLDHVAATAARAHAKALEADPTVDALVFLPGVAEVETVAGRVAALAPDTEVRV
+LHGRQEPADQDAALAGRTDPAVPRVVVATAVAESSLTVPGVRLVVDSGLAREPRRDRGRGMAGLVTVQASRAAAGQRAGR
+AARLGPGTVVRCHTAAALGTAPAAPTPALAVVDLAPVALAFAAWGAPGGRGLTLPEDPPADAMAAAERTLASLGAVDADG
+RITPHGAVLAELPLDPPLGHALLRAAPLTGPRPAAEATAALALDLRAPGADLEALVAALRDGRHPEAGRWHREADRLERL
+ARRHAHHAPETREPDEPGPEA-ATAPRHSAGLVAALAFPAWIARRAGEEGAYLLASGTRAALPRDAV-GGLAGQEWLAVA
+EVARVAGDAAGTGAAIRAAAPIDRSLVERAGAGLRRTEDTAEWRGDRLTGRRVDRLGALVLAETPAPVAPDAAAQAVRDA
+LAADGLARFDPRGRAERLRRRVHLLHRVLGAPWPDLSDTALPDLDTLVDGLAADLAAGRPLARLDAEALLRGALPWPEAG
+RLDELAPERLPVPSGRAVVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPLAVTADLPSFWAG
+PYAQVRAENRGRYPKHPWPEDPAVAEPTARTNRRAL
+>KD337_NAFOICDF_02417
+---MSTS-------SASHSTPDLRAALAAASARLGADLAFSASLPALEAALDARAGAVVHAPPGTGKTTAVPPAVALWLA
+RRAESGGEGGRVLVTQPRRVAVRAAWRRLHGAVADALG---PESGPDT-GRLPDAVVGYAVRGDAVGRGASAVEFVTPGL
+LLRRLLGDPGLEGVGAVVLDEVHERDLDTDVLFALLADLRQLRPELALTAMSATLDADALAARWATGMGE-DPVPVVRTP
+SVQHPLTVEHAPFGGPRTTADGRVDRDFLDHVAATAARAHAEALDADPTVDALVFVPGVAEVEAVAGRVAALAPDTEVRV
+LHGRQEPADQDAALAGRADPAVPRVVVATAVAESSLTVPGVRLVIDSGLAREPRRDRGRGITGLATVQASRAAADQRAGR
+AARLGPGTAVRCHTAAALGAAPAAPTPALAVADLASVVLAFAVWGAPGGDGLVLPEDPPADAMAAAERTLASLDAVDTDG
+RITPHGTVLAELPLDPPLGHALLRAAPLTGPRSAAEATAALALDLRAPGADLEALVAALRDGRHPEAGRWRREADRLERL
+ARRHAHRAPETREPDEPGPAATATARRHPAGLVAALAFPAWIARRAGEEGAYLLASGTRAALPRDAVGGGLAGQEWLAVA
+EVARVAGDAAGTGAAIRAAAPIDRPLAELAGAGLRRTEDTAEWRGDRLTGRRVDRLGALVLAETPAPVAPDAAAQAVRVA
+LAADGLARFDPSGRAERLRRRVHLLHRVLGAPWPDLSDATLPGLDALVDGLAADLAAGRSLTRLDAEALLRGALPWPEAG
+RLDELAPERLPVPSGRGVVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPLAVTADLPSFWAG
+PYAQVRAENRGRYPKHPWPEDPAAAEPTDRTNRRAR
+>SA211_MHAAABBN_00130
+MDPMPTP-------VDPVAVP---SALSTALGRLSAGLTFAAALPELGSALDARGAAVVEAPPGTGKTTVVPPALAVRLA
+DHG-----GGRVLVTQPRRVAVRAAWRRLRTAVLAAAADAQPGADPDARARLADAAVGYAVRGDAAGGGASAVEFVTPGL
+LLRRLLADPGLDGVDAVVLDEVHERDLDTDVLFALLADLRQLRPELALVAMSATVDAAALAARWARGMGE-APLPVVSTP
+AVLHPLREEHAPFRGHRLTAEGRVDRAFLDHVAATAARAHAEALEADPTVDALVFLPGVAEVEAVAGRVAALAPDTEVRV
+LHGRQEPADQDAALAGRADPAVPRVVVATAVAESSLTVPGVRLVIDSGLAREPRRDRGRGMAGLVTVQASRAAAGQRAGR
+AARLGPGTVVRCHTAAALGTAPAAPTPALAVVDLAPVALAFTAWGAPGGRGLTLPEDPPADAMAAAERTLASLDAVDADG
+RITPHGAVLAELPLDPPLGHALLRAALWTGPRPAAEATAALALDLRAPGADLEALVASVRDGRHPEAGRWRREADRLERL
+ARRHAHHSLETRAPGEPGPEATAAARRHPAGLVAALAFPAWIARRAGEAGAYLLASGTRAALPRDAAGGGLAGQEWLAVA
+EVARVAGDAAGTGAAIRATAPIDRTLAELAGAGLRRTEDTADWRGDRLTGRRVDRLGALVLAETPAPVAPDAAAQAVRAA
+LAADGLARFDPSGRTERLRRRVHLLHRVLGAPWPDLSDAALPGLDALVDGLAADLAAGRSLARLDAEALLRGALPWPEAG
+RLDELAPERLPVPSGRAVVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPLAVTADLPSFWAG
+PYAQVRAENRGRYPKHPWPEDPAAAEPTARTNRRAR
+>TT9_LFPAFLNI_00413
+---MPTP-------VDPVSVP---SALSAALGRLSAGLTFAAALPDLEAALDARGAAVVEAPPGTGKTTVVPPALAVRLA
+DHG-----GGRVLVTQPRRVAVRAAWRRLRTAVLAAAADAQPGADPDAQARLGDAAVGYAVRGDAAGGGASAVEFVTPGL
+LLRRLLADPGLDGVGAVVLDEVHERDLDTDVLFALLADLRQLRPELALVAMSATVDAAALAARWARGMGEDAPLPVVSTP
+AVLHPLREEHTPFRGHRLTAEGRVDRAFLDHVAATAARAHAEALDADPTVDALVFLPGVAEVEAVAGRVAALAPDTEVRV
+LHGRQEPADQDAALAGRADPAVPRVVVATAVAESSLTVPGVRLVIDSGLAREPRRDRGRGMAGLVTVQASRAAAGQRAGR
+AARLGPGTVVRCHTAAALGTAPAAPTPALAVVDLAPVALAFAAWGAPGGRGLTLPEDPPADAMAAAERTLASLDAVDADG
+RITPHGAVLAELPLDPPLGHALLRAAPWTGPRPAAEATAALALDLRAPGADLEALVAAVRDGRHPEAGRWRREADRLERL
+ARRHAHHA-----PGEPGPEAAATVRRHPAGLVAALAFPAWIARRAGEAGAYLLASGTRAALPRDAAGGDLTGQEWLAVA
+EVARVAGDAAGTGAAIRAAAPIDRTLAELAGAGLRRTEDTADWRGDRLTGRRVDRLGALVLAETPAPVAPDAAAQAVRAA
+LAADGLARFDPSGRTERLRRRVHLLHRVLGAPWPDLSDAGLPGLDALVDGLAADLAAGRPLTRLDAEALLRGALPWPEAG
+RLDELAPERLPVPSGRAVVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPLAVTADLPSFWAG
+PYAQVRAENRGRYPKHPWPEDPAAAEPTARTNRRAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001717.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001717.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b3173f32e411b1d05e3b79e27718d93087a16a97
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001717.fa
@@ -0,0 +1,45 @@
+>AS2_ACLBLIBL_02550
+MTTPVQKHLDRLTSAHT--------GEGDVPDGLGVAMLMVDGHRYVSGSMTSVPLATLASPLFHAQALEDLGAVRVGER
+VGAAPVRDLDHRVEVDAVTGLPHNPLQNAGAVATASLVKGRGGRDRTARMMQLLSALFDREVTVTESAARAENRAQHHTR
+SAAWLMKSLDTLDADPETLLEDIATVRAAAVTVEDLALLAGTLAHGGVHPVTGDRVLSEETVRGVLSVMDSCGMDTRDSR
+WAYDVGQPGWASTRGGTVLVVVPGHLGLALQ--SDTTDENALGAAAMAALRTIVEDFELHPSVVTGSPRAALRTHYRIDQ
+APSGTVRSAVVLEALGRFADTVHVLELGGHLGFSQVDAIARVSRGLPEALETLVVDMRSVSSISRPARLLVAQWFARALG
+NGLDVVVVDRDAAEIRELMAAVEESVEVDLPEPLQDEAEGVDPAAE--GAQFVFFDSRSRAAQWAEQRLLSQHAPHLLPR
+DAQEAAVAPLLQHLSADDARLLESMMDERVYSDGQIIRRAGQPFGGIYVIVSGTVELSGQGTGSRRVRRTLLTPGMTFGE
+MALGQPGRQPSTVRARGPVTARVLTAQVMVALQEGFPQLALALWEALARDAFTALSQLIRETGALQD
+>KBS0714_MOLHKGIG_00406
+MTTPVQEHLDRLTSAHA--------GEGEVPDGLGVAMLLVDGHRYVSGSMTPVPLATLASPLFHAQALEDLGAVRVGER
+VGAVPVRDLDHRVEVDAVTGLPHNPLQNAGAVATASLVKGRGGRDRTARMMQLLSALFDREVTVTESAARAENRAQHHTR
+SAAWLMKSLDTLDADPETLLEDIATVRAAAVTVEDLALLAGTLAHGGVHPVTGDRVLSEETVRGVLSVMDSCGMDTRDSR
+WAYDVGQPGWASTRGGTVLVVVPGHLGLALQ--SDTTDENGLGAAAMAALRTIVEDFELHPSVVTGSPRAALRTHYRIDQ
+APSGTVRSAVVLEALGRFADTVHVMELGGHLGFSQVDAIARVSRGLPEALETLVVDMRSVSSISRPARLLVAQWFARALG
+NGLDVVVVDRDAAEMKELMSAVEESVEVDLPEPLQDEAEGVDPAAE--GAQFVFFDSRSRAAQWAEQRLLSRHAPHLLPR
+DAQEAAVAPLLQHLSADDARLLESMMDERVYSDGQIIRRAGQPFGGIYVIVSGTVELSGQGTGSRRVRRTLLTPGMTFGE
+MALGQPGRQPSTVRARGPVTARVLTAQVMVALQEGFPQLALALWEALARDAFTALSQLIRETGALQD
+>KD337_NAFOICDF_02418
+MKSPVQDRLDRLTAAHTPGTAADADATSDAGTGLALSVATVGGDHYSAGELVAVPLAGLAGPVVHALALEDLGVERVGEA
+VGTVPRPDLRTRLELEPGTGRPLTPLQDAGTMALAALVKGRGGRDRAARLLQQLAGLIGRETAPTDAAVRAADRAQHRAR
+AAAWLLRSVGVLEADPDGLLADVATLRAAPVTVADLALLAGTLAAHGVHPVSGERVLAEETVRAVLSALDACGMDTVDGA
+WALDVGQPGWSSARAGTVIAVVPGHMGIAVQGPADPDDADAPSPAALAALRTLVRDFELHPSQAAGSPRAAFRTHYRVDQ
+APSGSVRSAEVLELLSAHGDTAHVLELGGHVGFSQVDALAHVARNLPAALETIIVDVRSVSSTSHAAAVLAAQWFAYALH
+HGLDVVVVDRDTAAVDQVMATAEAS-GVTLPDPLHD-ADDADPGHQDLGPAFRFFDSRSRAVQWAEQRLLARHAPHLLPA
+SEEEAAMAPLLQHLSSEDARLLESMMDERVYEDGQIIRRAGQPFGGIYVITSGRVELTGQGTGGRRVRRTVLTPGMTFGE
+MALGQPGRQPSTVRARGRVTTRVLTAQVMYALQEGFPSLALTLWEALARDAYTALGQLIRETGALQD
+>SA211_MHAAABBN_00129
+MTTPVQEHLDRLTSAHA--------GEGEVPDGLGVAMLMVDGHRYVSGSMTPVPLATLASPLFHAQALEDLGAVRVGER
+VGAAPVRDLDHRVEVDAVTGLPHNPLQNAGAVATASLVKGRGGRDRTARMMQLLSALFDREVTVTESAARAENRAQHHTR
+SAAWLMKSLDTLDADPETLLEDIATVRAAAVTVEDLALLAGTLAHGGVHPVTGDRVLSEETVRGVLSVMDSCGMDTRDSR
+WAYDVGQPGWASTRGGTVFVVVPGHLGLALQ--SDTTDENGLGAAAMAALRTIVEDFELHPSVVTGSPRAALRTHYRIDQ
+APSGTVRSAVVLEALGRFADTVHVMELGGHLGFSQVDAIARVSRGLPEALETLVVDMRSVSSISRPARLLVAQWFARALG
+NGLDVVVVDRDAAEMKELMAAVEESVEVDLPEPLQDEAEGVDPAAE--GAQFVFFDSRSRAAQWAEQRLLSRHAPHLLPR
+DAQEAAVAPLLQHLSADDARLLESMMDERVYSDGQIIRRAGQPFGGIYVIVSGTVELSGQGTGSRRVRRTLLTPGMTFGE
+MALGQPGRQPSTVRARGPVTTRVLTAQVMVALQEGFPQLALALWEALARDAFTALGQLIRETGALQD
+>TT9_LFPAFLNI_00412
+MTTPVQEHLDRLTSAHA--------GEGEVPDGLGVAMLLVDGHRYVSGSMTPVPLATLASPLFHAQALEDLGAVRVGER
+VGAAPVRDLDHRVEVDAVTGLPHNPLQNAGAVATASLVKGRGGRDRTARMMQLLSALFDREVTVTESAARAENRAQHHTR
+SAAWLMKSLDTLDADPETLLEDIATVRAAAVTVEDLALLAGTLAHGGVHPVTGDRVLSEETVRGVLSAMDSCGMDTRDSR
+WAYDVGQPGWASTRGGTVLVVVPGHLGLALQ--SNTTDENGLGAAAMTALRTIVEDFELHPSVVTGSPRAALRTHYRIDQ
+APSGTVRSAVVLEALGRFADTVHVMELGGHLGFSQVDAIARVSRGLPEALETLVVDMRSVSSISRPARLLVAQWFARALG
+NGLDVVVVDRDAAEMKELMSAVEESVEVDLPEPLQDEAEGVDPAAE--GAQFVFFDSRSRAAQWAEQRLLSRHAPHLLPR
+DAQEAALAPLLQHLSADDARLLESMMDERVYSDGQIIRRAGQPFGGIYVIVSGTVELSGQGTGSRRVRRTLLTPGMTFGE
+MALGQPGRQPSTVRARGPVTARVLTAQVMVALQEGFPQLALALWEALARDAFTALGQLIRETGALQD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001725.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001725.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2b5ba5fd3e036d54b306fc2d74025ec7f7b36459
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001725.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_02560
+---------------------------MTALLSLLAVMIPTLVVWATGGFQRPTIEGALQVGGTLWLALHAVPVTVATVL
+PTAEGHVLSGTAWLVPWGLTLIPLLLSWRAGRRLARASYRDQAWQAFAGAVVGYALAGLTVAFLPGTPELRVSPWAAALL
+PALLFGIAALAGARREAGTWAHLIGLDLTERIARRSQYERWAGSYAWSVVRAAVVALLVLAALSALLVAVRLAVEWPAVV
+TLAQAIDAGPFGGLLLAVLQIGWLPTLTGWAIAWTAGPGFSVGSDSLYSVFGATPAAAPALPALGALPAAWAPWHPLFLA
+VPIAAGVAAGVWLLREGENHLDDWLDARTGHRAVSLALSTLALAVLTGLLAGLLLLVPLALTSGTLGVGTLTDIGANVWA
+VCAAVAGWVALGCAAGYLVALALA-----GRR----FIPPA--EA-AVAAERPRPRR-----------------------
+-------------------------------------------SRD
+>KBS0714_MOLHKGIG_00397
+MSSRPAAPRLLRPVPLPLWLQGVVEALVTAMISLLAVMVPTLAVWATGGFERPTIEGAVQVGGVLWLALHAVPVTVTTAM
+PTAPDHLITGTAWLVPWGLTLLPLALSWRAGRRLARASYRDQAWQAFVGAVGAYALVGLAVAFLPGTDELTAHPAPAALL
+PALLFGVAALAGARREAGTWAHLIGLDLTERISRRSQYERWAGSYAWSVVRAAAVAVLALTGLNALLVAGRLAVEWTAVV
+TVAEAIGGGPLGGLLLALLQIGWLPTFTAWSIAWTAGPGFSVGADSLYSVFGATPATAPALPALGALPGTWSPWQLLLLA
+VPIGAGAVAGVWLLREGENHLDDWLHTRHGSRAVSLTLSTLALAVLTGLLTGLLLLVPLALTSGTLGLGALTDLGSHVWA
+VSAAVAGWVALGCAAGYLTALAVA-----GHRDGTTTVPRSGDRA-SGLRDRPSPRR-----------------------
+-------------------------------------------ARD
+>KD337_NAFOICDF_02431
+MS--PRVPSLLRPVPLPLWLQGVVEALVTALTSLALVLVPTLAVWITGGFSSTRIEDVLQTGGALWLGLHAVPLAVTTVV
+AQADTPTVTGTVWLVPWALTALPVWLSWRAGRRLARASYREQAWQALAGAVAAYAVVALACALLPGEGRITVHPLPSVLL
+PCLLFTTSAVAGARREAGTWAHLIGLDLTERIARRSQYERWAGTYAWSVLRGAGVGLAALAGLHALLVTVAVLVRWPRII
+EVQQMVGAGPVGGLMLALLEIGWLPTFTAWAVAWTAGPGFAVGADGHYSVFGTTPAPVPALPLLEALPAPWAPWHPAFLL
+VPVLAGAVAGWWLLREGENHLDDWIDSRITARWASLTLSTLALALLLGLVSGVAVLVPLALTNGTLGVGSMREIGSNAPL
+VALAVAGWMALGCALGYLVALAVVDRPVRGRRRISLPLPGSAPRAVTGRARRLPPRRLPRGVADAEADEPEVAAPAAARE
+EIPGRETPAQETPSEEPPAAARPAPRRAGAPRVPRVPRPAPRRARD
+>SA211_MHAAABBN_00121
+MSSRPAAPRLLRPVPLPLWLQGVVEALVTAMISLLAVMVPTLAVWATGGFERPTIEGAVQVGGVLWLALHAVPVTVATAM
+PTAPDHLITGTAWLVPWGLTLVPLALSWRAGRRLARASYRDQAWQAFVGAVGAYALVGLAVAFLPGTDELTAHPAPAALL
+PALLFGVAALAGARREAGTWAHLIGLDLTERISRRSQYERWAGSYAWSVVRAAAVAVLALTGLNALLVAGRLAVEWTAVV
+TVAQAIGGGPLGGLLVALLQIGWLPTFTAWSIAWTAGPGFSVGADSLYSVFGATPATAPALPALGALPGTWSPWQLLLLA
+VPISAGVVAGVWLLREGENHLDDWLHTRHGSRAVSLTLSTLALAVLTGLLAGLLLLVPLALTSGTLGLGTLTDIGPHVWA
+VCAAVAGWVALGCAAGYLTALAVA-----GHRDGTTTVPRSGDRA-SGLRDRPSPRR-----------------------
+-------------------------------------------ARD
+>TT9_LFPAFLNI_00403
+MSSRPAAPRLLRPVPLPLWLQGVVEALVTAMISLLAVMVPTLAVWATGGFERPTIEGAVQVGGVLWLALHAVPVTVATAM
+PTAPDHLITGTAWLVPWGLTLVPLALSWRAGRRLARASYRDQAWQAFVGAVGAYALVGLAVAFLPGTDELTVHPAPAALL
+PALLFGVAALAGARREAGTWAHLIGLDLTERISRRSQYERWAGSYAWSVVRAAVLAVLALTGLNALLVAGRLAVEWTAVV
+TVAEAIGAGPLGGLLLALLQIGWLPTFTAWSIAWTAGPGFSVGADSLYSVFGATPATAPALPALGALPGTWSPWQLLLLA
+VPIGAGAVAGVWLLREGENHLDDWLHTRHGSRAVSLTLSTLALAVLTGLLTGLLLLVPLALTSGTLGLGTLTDIGSHVWA
+VCAAVAGWVALGCAAGYLTALAVA-----GHRDGTTTVPRSGDRA-SGPRDRPSPRR-----------------------
+-------------------------------------------ARD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001727.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001727.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c34456b63c7a9c6ebe9e8f9373dec7601b677dcb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001727.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02562
+MNHALETLRDEVFARNPGEAEFHQAVSEVFEALDPVMERHPQYVEAGVLHRLCEPERQII
+FRVPWIDDNGVVQVNRGFRVEFNSALGPYKGGLRFHPSVYLGIIKFLGFEQIFKNSLTGM
+PIGGGKGGSDFDPAGKSDREIMRFCQSFMTELHRHIGEHTDVPAGDIGVGGREIGYMFGQ
+YKRLTNRFEAGVLTGKGLTWGGSLVRTEATGYGAVMFADSMLKTRGESMDGQQVLISGSG
+NVAIYAAEKAASLGATVLTASDSAGYIVDPDGLDLDLLKQIKEVERARISEYVERKGGRA
+RYVAGGSVWDVEGTVALPCATQNELDESAAKTLLGNGVKAVAEGANMPCTEAATRLFLHA
+KTLFGPGKAANAGGVATSALEMQQNASRDSWNFEYTHDRLEAIMRDIHDRCVETAEEYGT
+PGNYVAGANIAGFIKVADAMIAQGVV
+>KBS0714_MOLHKGIG_00394
+MNESLETLRDEVFARNPGEAEFHQAVSEVFEALGPVVQRHPQYVEAGVMHRLCEPERQII
+FRVPWIDDAGVVQVNRGFRVEFNSALGPYKGGLRFHPSVYLGIVKFLGFEQIFKNSLTGM
+PIGGGKGGSDFDPAGKSDREIMRFCQSFMTELHRHIGEHTDVPAGDIGVGAREIGYMFGQ
+YKRLTNRFEAGALTGKGLTWGGSLVRTEATGYGAVMFVDSMLRTRGESMDGQQVLISGSG
+NVAIYAAEKAAALGATVLTASDSSGYIVDPDGLDLDLLKQIKEVERARISEYAERRGGRS
+RYVTGGSVWDVEGTVALPCATQNELDESAARTLLKNGVKAVAEGANMPCTEAAAHLFVDS
+GTLFGPGKAANAGGVATSALEMQQNASRDSWSFDYTHDRLEQIMRDIHDRCVETAEEYGT
+PGNYVAGANIAGFIKVADAMIAQGVV
+>KD337_NAFOICDF_02434
+MHQVLQTLRDEVFARNPGEAEFHQAVSEVFEALDPVVERHPHYVDAGVLHRLCEPERQII
+FRVPWIDDAGVVQVNRGFRVEFNSALGPYKGGLRFHPSVYLGIIKFLGFEQIFKNSLTGM
+PIGGGKGGSDFDPAGKSDREIMRFCQSFMTELHRHIGEHTDVPAGDIGVGGREIGYMFGQ
+YKRLTNRFESGVLTGKGLTWGGSLVRTEATGYGAVMFADSMLRTRGESMDGQKVLISGSG
+NVAIYAAEKAAQLGATVLTASDSAGYIVDPDGVDVELLKQIKEVERARISEYAERKGGKV
+RYVAGGSVWDVEGTVALPCATQNELDESAAKTLLQNGVKAVAEGANMPSTEAATHLFLDA
+GTLFGPGKAANAGGVATSALEMQQNASRDSWDFDYTHDRLERIMRDIHDRCVETAEEYGT
+PGNYVAGANIAGFIKVADAMIAQGVV
+>SA211_MHAAABBN_00118
+MNESLETLRDEVFARNPGEAEFHQAVSEVFEALGPVVQRHPQYVEAGVMHRLCEPERQII
+FRVPWIDDAGVVQVNRGFRVEFNSALGPYKGGLRFHPSVYLGIVKFLGFEQIFKNSLTGM
+PIGGGKGGSDFDPAGKSDREIMRFCQSFMTELHRHIGEHTDVPAGDIGVGAREIGYMFGQ
+YKRLTNRFEAGALTGKGLTWGGSLVRTEATGYGAVMFVDSMLRTRGESMDGQQVLISGSG
+NVAIYAAEKAAALGATVLTASDSSGYIVDPDGLDLDLLKQIKEVERARISEYAERRGGRS
+RYVTGGSVWDVEGTVALPCATQNELDESAARTLLKNGVKAVAEGANMPCTEAAAHLFVDS
+GTLFGPGKAANAGGVATSALEMQQNASRDSWSFDYTHDRLEQIMRDIHDRCVETAEEYGT
+PGNYVAGANIAGFIKVADAMIAQGVV
+>TT9_LFPAFLNI_00400
+MNESLETLRDEVFARNPGEAEFHQAVSEVFEALGPVVQRHPQYVEAGVMHRLCEPERQII
+FRVPWIDDAGVVQVNRGFRVEFNSALGPYKGGLRFHPSVYLGIVKFLGFEQIFKNSLTGM
+PIGGGKGGSDFDPAGKSDREIMRFCQSFMTELHRHIGEHTDVPAGDIGVGAREIGYMFGQ
+YKRLTNRFEAGALTGKGLTWGGSLVRTEATGYGAVMFVDSMLRTRGESMDGQQVLISGSG
+NVAIYAAEKAAALGATVLTASDSSGYIVDPDGLDLDLLKQIKEVERARISEYAERRGGRS
+RYVTGGSVWDVEGTVALPCATQNELDESAARTLLKNGVKAVAEGANMPCTEAAAHLFVDS
+GTLFGPGKAANAGGVATSALEMQQNASRDSWSFDYTHDRLEQIMRDIHDRCVETAEEYGT
+PGNYVAGANIAGFIKVADAMIAQGVV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001728.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001728.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a394a082a086ca0ca28079c6f691519c381a568f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001728.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02564
+MT-----------GPRAVEVRIPLRWADMDAYGHINNIAVVQLLEEARVAAFGVPANTGA
+GGGEAPPIDLLEGVAPGVRTFISEHTVKYRAQMPYRPVPLRVVVSVEAVKAASVHVGYAL
+HDGVDDTLCATASSVMVFVDGETGRPVRVTPEQRAALQG
+>KBS0714_MOLHKGIG_00392
+MT-----------ASRSVEVRIPLRWADMDAYGHVNNIAVVQLLEEARVAAFGVPANTGA
+GGGQAPPIDLLEGVAPGVRTFISEHTVKYRAQMPYRPVPLRVVVSVDAVKAASVHVGYAL
+HDGVDDTLCATATSVMVFVDGQTGRPVRISPEQRAALAG
+>KD337_NAFOICDF_02435
+MTETTTSSAARDGAGRWVEVSVPLRWADMDAYGHINNIAVVQLLEEARVAVFGVPANTGA
+GGGGAPPVDLLEGVPEGVRTFVSEHTVKYRAQMPYRPVPLRVRVGVAAVKAVSVEVAYEL
+YDGVDGTLCVTARSVMVFVDGASGRPVRLTAEQRAALAG
+>SA211_MHAAABBN_00116
+MT-----------ASRSVEVRIPLRWADMDAYGHVNNIAVVQLLEEARVAAFGVPANTGA
+GGGQAPPIDLLEGVAPGVRTFISEHTVKYRAQMPYRPVPLRVVVSVDAVKAASVHVGYAL
+HDGVDDTLCATATSVMVFVDGQTGRPVRISPEQRAALAG
+>TT9_LFPAFLNI_00398
+MT-----------ASRSVEVRIPLRWADMDAYGHVNNIAVVQLLEEARVAAFGVPANTGA
+GGGQAPPIDLLEGVAPGVRTFISEHTVKYRAQMPYRPVPLRVVVSVDAVKAASVHVGYAL
+HDGVDDTLCATATSVMVFVDGQTGRPVRISPEQRAALAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001735.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001735.fa
new file mode 100644
index 0000000000000000000000000000000000000000..05f0ee763170f87e5fe8b39b9389643738bdbfa4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001735.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02573
+MSPRGRSGSRLTQASLETEGNSFMTTKNRAVAFHGIKDVRVDELDFPKLEMPDGSAAPHG
+VILKIVATNICGSDLHIYRGSFPVPEGMVLGHEMTGQVLEVGSDVQFLKEGDLVSVPFNV
+ACGRCRNCRAGRTEVCETANPEQACAAYGFNLGNFQGGQAEYLFVPYADFQLLRFPDQEQ
+AMEKILDLAVLSDILPTAFHGLMAAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVG
+DQDASRLELVRKHGCETIDLSVTENLQDAVNDILGEPMVDCAVDYVGSEAHGLGSESDEM
+QPIAAVNQVLDITRPGGATGIIGIYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQA
+PIMRYNRQLMMSILWDRMPYLTEMVNPRVISLDEAPQAYAEFDQGSVDKFIIDPHGMIAR
+>KBS0714_MOLHKGIG_00382
+-----------------------MTTKNRAVAFHGIKDVRVDELDFPKLEMPDGSAAPHG
+VILKIVATNICGSDLHIYRGSFPAPEGMVLGHEMTGQVLEVGSDVQFLQEGDLVSVPFNV
+ACGRCRNCRAGRTEICETANPDQACAAYGFNLGGFQGGQAEYLFVPYADFQLLRFPDQEQ
+AMEKILDLTVLSDILPTAFHGLVEAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVG
+DQDASRLELVRKHGCETIDLSTTENLQDAVSDILGEPMVDCAVDCVGSEAHGLGSASDEM
+QPIAAVNQVLDITRPGGATGIIGIYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQA
+PVMRYNRQLMMSILWDRMPYLTEMVNPRVISLDEAPQAYAEFDQGSLEKFVIDPHGMIAR
+>KD337_NAFOICDF_02445
+-----------------------MTTKNRAVAFHGIKDVRVDELDFPKLEMPDGSAAPHG
+VILKIVATNICGSDLHIYRGSFPVPEGMVLGHEMTGQVLEVGSDVQFLKEGDLVSVPFNV
+ACGRCRNCRAGHTEICETANPEQACAAYGFNLGNFQGGQAEYLFVPYADFQLLRFPDQEQ
+AMEKILDLAVLSDILPTAFHGLMAAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVG
+DQDASRLELVRKHGCETIDLSVTENLQDAVNDILGEPMVDCAVDYVGSEAHGLGSESDEM
+QPIAAVNQVLDITRPGGATGIIGIYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQA
+PIMRYNRQLMMSILWDRMPYLTEMVNPRVISLDEAPQAYAEFDQGSVDKFIIDPHGMIAR
+>SA211_MHAAABBN_00106
+-----------------------MTTENRAVAFHGIKDVRVDELDFPKLEMPDGSAAPHG
+VILKIVATNICGSDLHIYRGSFPAPEGMVLGHEMTGQVLEVGSDVQFLQEGDLVSVPFNV
+ACGRCRNCRAGRTEVCETTNPEQACAAYGFNLGGFQGGQAEYLFVPYADFQLLRFPDQEQ
+AMEKILDLAVLSDILPTAFHGLMEAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVG
+DQDASRLELVRKHGCETIDLSTTENLQDAVNDILGEPMVDCAVDCVGSEAHGLGSASDEM
+QPIAAVNQVLDVTRPGGATGIIGIYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQA
+PIMRYNRQLMMSILWDRMPYLTELVNPRVITLDEAPQAYAEFDQGSVEKFVIDPHGMIAR
+>TT9_LFPAFLNI_00388
+-----------------------MTTKNRAVAFHGIKDVRVDELDFPKLEMPDGSAAPHG
+VILKIVATNICGSDLHIYRGSFPAPEGMVLGHEMTGQVLEVGSDVQFLQEGDLVSVPFNV
+ACGRCRNCRAGRTEICETANPEQACAAYGFNLGGFQGGQAEYLFVPYADFQLLRFPGQEQ
+AMEKILDLAVLSDILPTAFHGLMEAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVG
+DQDASRLELVRKHGCETIDLSVTENLQDAVNDILGEPMVDCAVDCVGSEAHGLGSASDEM
+QPIAAVNQVLDITRPGGATGIIGIYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQA
+PIMRYNRQLMMSILWDRMPYLTEMVNPRVISLDEAPQAYAEFDQGSLEKFVIDPHGMIAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001736.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001736.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e94b14b0ae44805cc3ba4f77a58d1fd7c7c5aa0e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001736.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02574
+MRLHHDPGLQPERTVMSWGRTVLALGVLSLMFLRWWPAVGAWAFGPAVVAAVGGAAVLAT
+QRRRYVAQSRGIAGEWARPALASVAGMVALVVGLAALGITATLLHAA
+>KBS0714_MOLHKGIG_00381
+MRLHHDPGLQPERTVMSWGRTALALGVLSLTFLRWWPAVGAWAFGPAVVAAVGGAAVLAT
+QRRRYVAHADGIAREQARPALASVACMVALVVGLAALGITATLLHAA
+>KD337_NAFOICDF_02446
+MRLHHDPGLQPERTVMSWGRTVLALGVLSLTFLRWWPAVGAWAFGPAVVAAVGGAAVLAT
+QRRRYVAQADGIAREQARPALASVACMVALVVGLAVLGITATLLHAA
+>SA211_MHAAABBN_00105
+MRLHHDPGLQPERTVMSWGRTVLALGVLSLTFLRWWPAVGAWAFGPAVVAAVGGAAVLAT
+QRRRYVAHADGIARERARPALASVACMVALVVGLAALGITATLLHAA
+>TT9_LFPAFLNI_00387
+MRLHHDPGLQPERTVMSWGRTVLALGVLSLTFLRWWPAVGAWAFGPAVVAAVGGAAVLAT
+QRRRYVAHADGIAREQARPALASVACMVALVVGLAALGITATLLHAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001738.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001738.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a9a126d2e594cd32e02ec9ecb032cce6f8c8d5a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001738.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02576
+MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
+RHEQHWRALLGEHAENPPRPSVHRILLRWLARIFGSVFVLALAQRAESDTPYAKDQDAPE
+GMVADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
+FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELTLVYLARG
+MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
+SGALIPILPYIFGMSGLWALGLAAAMVGVALLFTGGVVGLLSGSSPLARGLRQLAIGYGA
+AAVTYVLGLLFGANVG
+>KBS0714_MOLHKGIG_00379
+MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
+RHEQHWRALLGEHAENPPRPSLHRILLRWLARIFGSVFVLALAQRAESDTPYAEDQDAPE
+GMVADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
+FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG
+MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
+SGALIPILPYIFGMSGLWALGLAAAMVGVALLFTGGVVGLLSGSSPLARGLRQLAIGFGA
+AAVTYVLGLLFGANVG
+>KD337_NAFOICDF_02448
+MSPAHAATPAALPEPTREQVRRWRRYLADEIAEGQIYRDIAASKDGVERDILIGLAEAEK
+RHEEHWRALLGEHAAHPPRPSVHRILLRALARVFGSVFVLALAQRAESDTPYAKDQDATE
+HMAADEQIHEEVVRGLASRGREQLAGSFRAAVFGMNDGLVSNLALVMGIGATGVASSVVL
+FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAEHLDLDRNELELVYLARG
+MTPEDAKHRALERLGYLSCDCNPQFSARPDGSKGPVDHSESFAEIGSAWGASLSSFCFFA
+SGALIPILPYLFGMTGLGALVVAAVLVGIALLFTGGVVGLLSGSSPLWRGLRQLMIGYGA
+AAVTYLLGLLVGGSIG
+>SA211_MHAAABBN_00103
+MSAAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
+RHEQHWRILLGEHAENPPRPSFRRVLLRWLARIFGSVFVLALAQRAESDTPYEKDQDAPE
+GMAADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
+FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG
+MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
+SGALIPILPYIFGMSGLWALGLAAAMVGAALLFTGGVVGLLSGSSPLARGLRQLAIGYGA
+AAVTYVLGLLFGANVG
+>TT9_LFPAFLNI_00385
+MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
+RHEQHWRALLGEHAENPPRPSLHRILLRWLARIFGSVFVLALAQRAESDTPYAEDQDAPE
+GMVADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
+FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG
+MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
+SGALIPILPYIFGMSGLWALGLAAAMVGVALLFTGGVVGLLSGSSPLARGLRQLAIGFGA
+AAVTYVLGLLFGANVG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001740.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001740.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a836a7ac94b50477979ba829071ba27a23b5ac9f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001740.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02591
+MDLYEYQARDLFEAHGVPVLAGIVAQTPEEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK
+VAKTADEAYEHAKAILGMDIKGHTVHQVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE
+GGMEIEQLAEERPEALAKVPVSPLTGIDAETAQKIVAEAGFPEELRADVADVIQKLWVVF
+EKEDATLVEVNPLVKTGDGKILALDGKVSLDDNAEFRHEGHAALVDERTEDPLEAKAKAN
+DLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEQHGGVKPANFLDIGGGANAEVMANGLD
+VILGDEQVKSVFVNVFGGITACDAVANGIVKALEILGDAATKPLVVRLDGNAVEEGRRIL
+QEANHPLVTLAATMDEGADKAAELAHSAN
+>KBS0714_MOLHKGIG_00371
+MDLYEYQARDLFEAHGVPVLAGIVAQTPDEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK
+VAKTADEAYEHAKAILGMDIKGHTVHQVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE
+GGMEIEQLAEERPEALAKVPVSALTGIDAETAQKIVTEAGFPEELRADVAEVIQKLWEVF
+EKEDATLVEVNPLVKTGDGTILALDGKVSLDDNAQFRHEDHAALVDERTEDPLEAKAKAN
+GLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEQHGGVKPANFLDIGGGANAEVMANGLD
+VILGDEQVKSVFVNVFGGITACDQVANGIVKALEILGDTATKPLVVRLDGNAVEEGRRIL
+QEANHPLVTLAATMDEGADKAAELAHSAN
+>KD337_NAFOICDF_02450
+MDLYEYQARDLFEKHGVPVLQGIVAETPEEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK
+VAKTADEAYEHAKAILGMDIKGHTVNKVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE
+GGMEIEQLAEERPEALAKVPVSALTGLDQATADTIVAEAGFPEELRADVAAVIVKLGEVF
+KNEDATLVEVNPLVKTGDGTILALDGKVSLDDNAEFRQADHAGLVDKTTEDPLEAKAKAN
+DLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGANAEVMAAGLD
+VILGDEQVKSVFVNVFGGITACDAVANGIVKALEILGDSATKPLVVRLDGNAVEEGRRIL
+QEADHPLVTLAATMDEGADKATELAHSAN
+>SA211_MHAAABBN_00087
+MDLYEYQARDLFEAHGVPVLAGIVAQTPDEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK
+VAKTADEAYEHAKAILGMDIKGHTVHQVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE
+GGMEIEQLAEERPEALAKVPVSPLTGIDAETAQKIVTEAGFPEELRADVAEVIQKLWEVF
+EKEDATLVEVNPLVKTGDGTILALDGKVSLDDNAAFRHEGHAALVDERTEDPLEAKAKAN
+GLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGANAEVMANGLD
+VILGDEQVKSVFVNVFGGITACDQVANGIVKALEILGDTATKPLVVRLDGNAVEEGRRIL
+QEANHPLVTLAATMDEGADKAAELAHSAN
+>TT9_LFPAFLNI_00378
+MDLYEYQARDLFEAHGVPVLAGIVAQTPDEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK
+VAKTADEAYEHAKAILGMDIKGHTVHRVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE
+GGMEIEQLAEERPEALAKVPVSALTGIDAETAQKIVAEAGFPEELRADVAEVIQKLWEVF
+EKEDATLVEVNPLVKTGDGTILALDGKVSLDDNAAFRHEGHAALVDERTEDPLEAKAKAN
+GLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGANAEVMANGLD
+VILGDEQVKSVFVNVFGGITACDAVANGIVKALEILGDTATKPLVVRLDGNAVEEGRRIL
+QEANHPLVTLAATMDEGADKAAELAHSAN
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001744.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001744.fa
new file mode 100644
index 0000000000000000000000000000000000000000..63bc8e458c333f2c6ed06b4de58a7d586f384693
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001744.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02597
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------MGLAGTRLSEEAATPGRFRVRGLAEGVQTDPEL
+LAQLAAAGVTPGRTVTAQAAIDPGYVRVEGEAADG-APESGALELAVETAAHVWVERLDA
+>KBS0714_MOLHKGIG_00364
+MTDLIDTTEMYLRTILELEEEGIPPLRARIVERLEHSGPTVSQTVARMERDGLVHVGMDR
+RLELTVAGRERAVSVLRKHRLAERLLADVIGLEWELVHEEACRWEHVMSDQVERRLLTLL
+ENPTETPYGTPIPPRPEQASAEDWSRDMGLAGTRLSEEAATAGRFRVRGLAEGVQTDPDL
+LAQLAGAGVTPGRVVRAEAARDAGYIRVEGEAEDGAAADGGALELAAATAAHVWVERLDG
+>KD337_NAFOICDF_02456
+MTDLIDTTEMYLRTILELEEEGTVPLRARIVERLEHSGPTVSQTVARMERDGLVHVGSDR
+RLLLTDEGRERAVAVLRKHRLAERLLSDVIGLDWAYVHDEACRWEHVMSDRVEQRLLEVL
+ENPTATPYGTPIPPRPEAQSAGEWSRDLGLAGEPLATAAATPGRFRVGSLSEGVQADPEL
+LAELQDAGVLPGGVLEAQPALEAGYVRVQGEGS------AEALELSAGTAAHVWVQRL--
+>SA211_MHAAABBN_00080
+MTDLIDTTEMYLRTILELEEEGIPPLRARIVERLEHSGPTVSQTVARMERDGLVHVGTDR
+RLELTVAGRERAVSVLRKHRLAERLLADVIGLEWELVHEEACRWEHVMSDQVERRLLTLL
+ENPTETPYGTPIPPRPEQASAEDWSREMGLAGTRLSEEAATAGRFRVRGLAEGVQTDPEL
+LAQLAGAGVTPGRVVRAQAARDAGYIRVEGEAEDGAAADGGALELAEATAAHVWVERLDG
+>TT9_LFPAFLNI_00371
+MTDLIDTTEMYLRTILELEEEGIPPLRARIVERLEHSGPTVSQTVARMERDGLVHVGADR
+RLELTVAGRERAVSVLRKHRLAERLLADVIGLEWELVHEEACRWEHVMSDQVERRLLTLL
+ENPTETPYGTPIPPRPEQASAEDWSRDMGLAGARLSEEAATAGRFRVRGLAEGVQTDPEL
+LAQLAGAGVTPGRVVRAEAARDAGYIRVEGEAEDGAAADGGALELAEATAAHVWVERLDG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001746.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001746.fa
new file mode 100644
index 0000000000000000000000000000000000000000..132a57a72c929379e85f26375c05bc06114ac4c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001746.fa
@@ -0,0 +1,26 @@
+>AS2_ACLBLIBL_02599
+MTDRED----------------ATPVEQEQ--AAPAAEEAVVKAPPARRRAPRRDDLLAA
+AVDEARAGLAGLAAPEEVGEHVDVLVDDDRLVTHRFESRLPGYAGWLWYATIARAPRSRL
+VTVCETGLVAGEGALVAPPWVPYAERVSEEERERLRAVAEGRVPGAAAPAGQPA--PEGD
+GKG
+>KBS0714_MOLHKGIG_00362
+MTTHDD----------------APRVDHRSPDAE--PAEERTAVPPARGRAPRRDELLAA
+DVDTARAGLAGLAAPDEVGEHVDVLVDDDRLLTHRFACRLPGYAGWLWYVTIARAPRAKQ
+VTVCETGLMAGEGSLVAPPWVPYAERVNEEERERLKAVAEGRVPGAPAPDAEGDGTPEAA
+ARG
+>KD337_NAFOICDF_02458
+MTEHSDTPGQTDTSGQTHTPEQAPAVAPAGPAADAAPA-ASARAP--RRRAPKRDELLAA
+AVDEARAALTELAEEGQVGPHLGVTVDDDRLMTHRFAAEVPGYTGWVWYSTIARAPRAKK
+VTVCETGLEAGEGAVVAPAWVPYADRVSAEERERLAAVAEGRVPDA--------------
+--G
+>SA211_MHAAABBN_00078
+MTTHDD----------------APRVDHRSPDAEPAPAEERAAVPPARRRAPRRDELLAA
+AVDAARAGLAGLAAPDEVGEHVDVLVDDDRLLTHRFACRMPGYAGWLWYVTIARAPRAKQ
+VTVCETGLMAGEGSLVAPPWVPYAERVNEEERERLKAVAEGRVPGAPAPEAEGDGTLGAA
+ALG
+>TT9_LFPAFLNI_00369
+MTTHDD----------------APRVDHRSPDAEPAPAEERAAVPPARRRAPRRDELLAA
+AVDAARAGLAGLAAPDEVGEHVDVLVDDDRLLTHRFACRMPGYAGWLWYVTIARAPRAKQ
+VTVCETGLMAGEGALVAPPWVPYAERVNEEERERLKAVAEGRVPGAPAPETAPD------
+DRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001755.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001755.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2a3ace4d25f6cfc3eeb52ddbc75b1d442b10d496
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001755.fa
@@ -0,0 +1,50 @@
+>AS2_ACLBLIBL_02610
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-------------------MLAPADADGALPAPDVLPEPDVTVPDPVVPVGPPEKRGRRRGRKARE----VFVENLPTQA
+LVLADRLHSSPYGRRMRSTLQQRREAETHALEARTTLDFALKLGETMFSFGAASLDVETSIIVVTQAYGILETEVDLTNQ
+SISLNYAPDSSRGESPYTLQRVVRSSSVNFEGLVAVHRLVEEIADGRLDRAEAQRRLVEIRHQPKPFPPVFEILFAGVFV
+ACFIPFIGGNWTGSLLGMISTWLVFWLKIQADRARFPEIFSTMFGAIVATVIALAAFALELPVNPAVVIAGGIMMLLPTA
+RFVTAVQDAINGFPVTAAGRFLSALLVFTGVMAGIMVAVALGDLAGLEHLDLAEAGTLQHPPLLLLALVTAAGMSDAVVE
+QSRWPQILACGLVSGAGYGVFLAAQQLGIGDRLVPAAAATAVGFLGRLVAQRIAAPALVIVLPSMLFLLPGLMMFRSVYG
+FTVETGSTLLGLAGLFNAAVIVVAIAAGVAFGNTLAKPITDRMGTLLPTELVMHQRG
+>KBS0714_MOLHKGIG_00351
+MEQEGTQEPAR------------------FDPLI-----------------------------AEPPAVPTLIPVLRPAG
+AEDAAAVGDLALDPEDPGLLDLDPAESAHP--AAVAVEPTEPLPPVVRPAAADPAPA---PAPEPEPEESAEPDAETLPE
+PAADAPLTEPPLSEQVPTSVLAPAEADGALPAPDVIPAPDITVPDPVVPVGPPEKRGRRRGRRSRE----VFVENLPTQA
+LVLADRLHSSPYGRRMRSTLQQRR-AEAQALEARTTLDFALKLGETMFSFGAASLDVETSIIVATQAYGILETEVDLTNQ
+SISLNYAPDSSRGEAPFTLQRVVRSSSVNFEGLVAVHRLVEEIAAGEVDRAEAQRRLVEIRHQPKPFPAVFEVLFSGVFV
+ACFVPFIGGTWTGAALGMVSTWLVFWLKIQADKARFPEIFSTMFGAITATVIALMAHALDLPVNPALVIAGGIMMLLPTA
+RFVTAVQDAIHGFPVTAAGRFLSALLVFAGVMAGIMIAVGIGDLVGFEQLDLAEAGTLSYPPLLLLGLVVAAGMADAVVE
+QSRWPQILACGLVSGAGFGAYLAAQQVGVSDRLVPAVAAAAVGFLGRLVAQRLAAPALVIVLPSMLFLLPGLTMFRSVYG
+FTVETGATLLGVEGLFNAAVIVVAIAAGVAFGNTLAKPITDRMGTLLPTELVMHQRG
+>KD337_NAFOICDF_02469
+MGAEPRRGPAQGTGPLGPDRNPRKDPVRSVDPLAPQDGSPEDGGVPQGARRAGTRPDAAGSAPAEPAVHVALLPVLRPAD
+ARTPAGASDGDAPAGDG--VDLAAAPAREPG-------PEDVLPPVLAPVAAPTVPVETLPTPEPAPA----PEEE--PT
+PAADAPLTAPPLSEPVPTSVLAPAEGDAPTAQEAAAAVPDVVVPDPLKQHGPEEPRGRRRRRRTREDHRAVFEEVLPTQA
+IVLVDRLQASPYGKRMRSTLRQRRDTEAAALEARTTLDFALKLGETMFGFGATSLDVETSIIVVTQAYGIHETEVDLTNQ
+AISLNYAPDSSRGEVPYTLQRVVRTYSTNFEGLVAVHRLVEEISDGTLERAEAQRRLVEIRRRPKPYPPAVEILLAGVFV
+ACFIPFIGGTWQGSLLGMVSTWFVFWLHTRT-SVFLPEIYSVMIGAFLATLIALGAYALHVPVNPAIVVAGGIMMLLPTS
+RFVTAVQDAINGFPVTAAGRFISAMLVFIGIMAGIMVAVGLTDMLGIARLDLAATQSTAYPTTLLLALVVAATACDAVVE
+RSGWRTLLASCAVTAAAFAAHTVVAGLGVSAQLLPAAAAAMVGFAGRIVALRVGAPPIVVVVPAILFLLPGFAVFRGLYE
+FTVESASTMAGLAGIVNALVIIVGIGAGAVFGDTLARPVTERLSPARSTPGPEGHTR
+>SA211_MHAAABBN_00067
+MEQEGTQEPAR------------------FDPLI-----------------------------AEPPAVPTLIPVLRPAG
+AEDAAAVGDLALDPEDPGLLDLDPAESAHP--AAVAVEPTEPLPPVVRPAAADPAPA---PAPEPEPEESAEPDAETLPE
+PAADAPLTEPPLSEQVPTSVLAPAEADGALPAPDVIPAPDITVPDPVVPVGPPEKRGRRRGRRSRE----VFVENLPTQA
+LVLADRLHSSPYGRRMRSTLQQRR-AEAQALEARTTLDFALKLGETMFSFGAASLDVETSIIVATQAYGILETEVDLTNQ
+SISLNYAPDSSRGEAPFTLQRVVRSSSVNFEGLVAVHRLVEEIAAGEVDRAEAQRRLVEIRHQPKPFPAVFEVLFSGVFV
+ACFVPFIGGTWTGAALGMVSTWLVFWLKIQADKARFPEIFSTMFGAITATVIALMAHALDLPVNPALVIAGGIMMLLPTA
+RFVTAVQDAIHGFPVTAAGRFLSALLVFAGVMAGIMIAVGIGDLVGFEQLDLAEAGTLSYPPLLLLGLVVAAGMADAVVE
+QSRWPQILACGLVSGVGFGAYLAAQQVGVSDRLVPAVAAAAVGFLGRLVAQRLAAPALVIVLPSMLFLLPGLTMFRSVYG
+FTVETGATLLGVEGLFNAAVIVVAIAAGVAFGNTLAKPITDRMGTLLPTELVMHQRR
+>TT9_LFPAFLNI_00358
+MEQEGTQEPAR------------------FDPRI-----------------------------AEPPAVPTLIPVLRPAG
+AEDAAAVGDLAIDPEDPGLLDLDPAESAHPAAAAVAVEPTEPLPPVVRPAAAD---------PEPEPEEPAEPEAETLPE
+PAADAPLTEPPLSEQVPTSVLAPADADGALPAPDVIPAPDITVPDPVVPVGPPEKRGRRRGRRSRE----VFVENLPTQA
+LVLADRLHSSPYGRRMRSTLQQRR-AEAQALEARTTLDFALKLGETMFSFGAASLDVETSIIVATQAYGILETEVDLTNQ
+SISLNYAPDSSRGEAPFTLQRVVRSSSVNFEGLVAVHRLVEEIAAGEVDRAEAQRRLVEIRHQPKPFPAVFEVLFSGVFV
+ACFVPFIGGTWTGAALGMVSTWLVFWLKVQADKARFPEIFSTMFGAITATVIALMAHALDLPVNPALVIAGGIMMLLPTA
+RFVTAVQDAIHGFPVTAAGRFLSALLVFAGVMAGIMIAVGIGDLLGFEQLDLAEAGTLSYPPLLLLGLVMAAGMADAVVE
+QSRWPQILACGLVSGAGFGAYLAAQQVGVSDRLVPAVAAAAVGFLGRLVAQRLAAPALVIVLPSMLFLLPGLTMFRSVYG
+FTVETGATLLGVEGLFNAAVIVVAIAAGVAFGNTLAKPITDRMGTLLPTELVMHQRG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001758.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001758.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fbc7223a3e460ae6145d50d1a3905d5f038aee54
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001758.fa
@@ -0,0 +1,46 @@
+>AS2_ACLBLIBL_02623
+MSERIVTVDTVETP--SPDDRLTVTGAPSGDASEDPATALLALPWSTALEDWPEDVLAAL
+PRGISRHVVRFARVGGGVVAVKETTEDLAFREYRLLRRLEGSPAPSVVPVAVVTGRTDGR
+GEPLPAALVTRYLHFSLPYRAVFSERLERRTLVRLMDALATLLVELHLEGFFWGDVSLSN
+VLFRRDAGGFAAHLVDAETGELRERLSTGQREHDLDVAAVNVGGELLDLQASGLLDPEVD
+PAATPELFVDAYRRLWDELTGPLLFPRAEPWRLDRRVRRLQELGFELAEYSLRAADAPGM
+MLAAPVEVHAGYHRRRLTRLTGLQVQENQARRLLVDIEAARRAWDPFLDLEGAAHRWVVE
+VFDPVVRSVPLELRAKLEPAEVMHQLLEHRWYLSEARGQAVPLQEAVDSYVDTVLRVRRD
+EDAVALHPTTTMLRTVPPADED---
+>KBS0714_MOLHKGIG_00346
+-------MDTVETP--SPVDRLTITGAPSGDATEDPATSLLALPWALPLETWPREVLAAL
+PRGISRHVVRFARMGGGIVAVKETTEELAFHEYRLLRRLERSPAPSVVPVAVVTGRTEDD
+GTPLPAALVTRHLRFSLPYRAVFSERLERRTLVRLMDALATLLVELHLEGFFWGDVSLSN
+VLFRRDAGGFAAHLVDAETGELRERLSNGQREHDLDVAAVNVGGELLDLQASGLLDPEVD
+PVTTPDLLVASYRRLWDELTGPLLFPRAEPWRLDRRVRRLQELGFELAEYSLRAADAPGM
+MIARPVEIHAGYHRRRLTRLTGLEVQENQARRLLVDIEAARREWDPYMDIEAAAHRWVVE
+VFDPVVRSVPLELRAKLEPAEVMHQLLEHRWYLSEARGQAVPLQEAVDSYVDTVLRARRD
+EDAVALHPTTTMLRAVPPADAD---
+>KD337_NAFOICDF_02475
+-------MDEHEQPRTDPADRLTVTAAPSGDASEDPATSLLALPWERPLEDWPAEVLAAL
+PRGISRHVVRFARMGAGVVAVKETTEELAFREYRLLRELEDRPSPSVVPVAVVTGRTRED
+GTALPAALVTRHLRFSLPYRAVFSERMERRTLVRLMDALALLLVELHLEGFFWGDVSLSN
+VLFRRDAGGFAAHLVDAETGELRERLSTGQREHDLDVARVNIGGELLDLHASGLADPDVD
+AIATPDLFVESYRQLWQQLTEPTVFPRGEPWRMDRRFRRLTELGFEVEEYSLRAADAPGM
+MVAQPTDVNSGYHRRRLERLTGLHVQENQARRLLVDIEAARRSWDPFMDMDHAAHRWVIE
+VFDPVVRSVPLELRAKLEPAEVMHQLLEHRWYLSEARGQAVPLDEAVDSYVETVLRARRD
+EDALALHPTTTMLRAVPAPEADPEG
+>SA211_MHAAABBN_00062
+-------MDTAETP--SPVDRLTITGAPSGDATEDPATSLLALPWALPLETWPREVLAAL
+PRGISRHVVRFARMGGGIVAVKETTEELAFHEYRLLRRLERSPAPSVVPVAVVTGRTEDD
+GTPLPAALVTRHLRFSLPYRAVFSERLERRTLVRLMDALATLLVELHLEGFFWGDVSLSN
+VLFRRDAGGFAAHLVDAETGELRERLSNGQREHDLDVAAVNVGGELLDLQASGLLDPEVD
+PVTTPDLLVASYRRLWDELTEPLLFPRAEPWRLDRRVRRLQELGFELAEYSLRAADAPGM
+MIARPVEIHAGYHRRRLTRLTGLEVQENQARRLLVDIEAARREWDPYMDIEAAAHRWVVE
+VFDPVVRSVPLELRAKLEPAEVMHQLLEHRWYLSEARGQAVPLQEAVDSYVDTVLRARRD
+EDAVALHPTTTMLRAVPPADAD---
+>TT9_LFPAFLNI_00353
+-------MDTAETP--SPVDRLTITGAPSGDATEDPATSLLALPWALPLETWPREVLAAL
+PRGISRHVVRFARMGGGIVAVKETTEELAFHEYRLLRRLERSPAPSVVPVAVVTGRTEDD
+GTPLPAALVTRHLRFSLPYRAVFSERLERRTLVRLMDALATLLVELHLEGFFWGDVSLSN
+VLFRRDAGGFAAHLVDAETGELRERLSTGQREHDLDVAAVNVGGELLDLQASGLLDPEVD
+PVTTPDLLVASYRRLWDELTEPLLFPRAEPWRLDRRVRRLQELGFELAEYSLRAADAPGM
+MIARPVEIHAGYHRRRLTRLTGLEVQENQARRLLVDIEAARREWDPYMDIEAAAHRWVVE
+VFDPVVRSVPLELRAKLEPAEVMHQLLEHRWYLSEARGQAVPLQEAVDSYVDTVLRARRD
+EDAVALHPTTTMLRAVPPADAD---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001761.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001761.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f772166dcad07c65ee9c12808968fe773f6d45f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001761.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_02627
+---------------------------MAWGAA--PAPAPAPGEGPALLASAGPEHAEAA
+RERARGALRAGIDAGVDLLDTADIYGAGVSEETVGALLHELPYEERSALKVQTKCGIVLD
+EVDADGRPMVRYDSSPEYVRARLEGSLARLGELRVDTLVIHRPDVLTPVADTVRAFLDAR
+EEGLVGKLGVSNLGVGRTLEFQRELAAQSADGTGLACVQVELGLHHRTLVESVILANHPG
+AAADADVADLGRVCAAEGIELQAWGSLGQGRFSSGDD-----------------GAAGVV
+GEIARELDTSREAVVLAWLLRLPWGVRPVIGSQDPGRIAACADAAAAAEAMDSAQWHRLW
+TAARGAPLP
+>KBS0714_MOLHKGIG_00342
+---MSTAPTHPPLDLDPTPATPIVLGTMAWGSVLPPPPDADPGVGPE--GPAGEAQAEAA
+VERARRALRAGIEAGVDLLDTADIYGAGRSEETVGRLLHELPYEERSALKVQTKCGIVLH
+ETDPAGRRLTRYDSSPEHVRASLEGSLARLGEQRVDTLIIHRPDVLTPVADTVRAFLDAR
+EAGLVGKLGVSNLGVGRVLEFQRELESQAADGTGLACVQVELGLHHRTLMEAVVLANHPD
+APADADAGRLGPVCAAEGIELQAWGPLGQGRFSSGDD-----------------GAAGAV
+GEVAAELGGSREAVVLAWLLRLPWDVRPVIGTQDPERVAACAEAAAAAEAMDSAQWHRLW
+TAARGAGLP
+>KD337_NAFOICDF_02479
+MTAQDTAPQTP-------AASPLILGTMGWGD----------------------------
+VERARGALRAGLEAGIGLLDTADIYGAGASEETVGALLAELDPAERTRLRVQTKSGIVLH
+EPGPDGTPAVRYDNSPAYLHERLALSLERLGLDRVDTLVVHRPDVLTPVSDTVRAFLDAR
+EAGRVDALGVSNMGTRRVLEYQHALREVSADGTGLACVQVELGLHHRMLVESVVLANHPA
+AAPDGGAGDLGEVCAGEGIEIQAWGPLGQGRFTRGSDGTVPADPAEQAALAAAGGAPAVV
+ARVARELEVSREAVVLAWLLRLPWGVRPVVGTQDPARIASCAQAADAAARMDGAQWHRLW
+TAARGETLP
+>SA211_MHAAABBN_00058
+---MSTAPTHPPLDLDPTPATPIVLGTMAWGSVLPPPPDADPGVGPE--GPAGEAQAEAA
+VERARRALRAGIEAGVDLLDTADIYGAGRSEETVGRLLHELPYEERSALKVQTKCGIVLH
+EADPAGRRLTRYDSSPEHVRASLEGSLARLGEQRVDTLIIHRPDVLTPVADTVRAFLDAR
+EAGLVGKLGVSNLGVGRVLEFQRELESQAADGTGLACVQVELGLHHRTLVEAVVLANHPD
+APADADAGRLGPVCAAEGIELQAWGPLGQGRFSSGDD-----------------GAAGVV
+GEVAAELGVSREAVVLAWLLRLPWGVRPVIGTQDPERVAACAEAASVAEAMDSAQWHRLW
+TAVRGAGLP
+>TT9_LFPAFLNI_00349
+---MSTAPTHPPLDLDPTPATPIVLGTMAWGSVPPPPPDADPGAGPE--GPAGEAQAEAA
+VERARRALRAGIEAGVDLLDTADIYGAGRSEETVGRLLHELPYEERSALKVQTKCGIVLH
+ETDPAGRRLTRYDSSPEHVRASLEGSLARLGEQRVDTLIIHRPDVLTPVADTVRAFLDAR
+EAGLVGKLGLSNLGVGRVLEFQRELESQAADGTGLACVQVELGLHHRTLVEAVVLANHPD
+APADADAGRLGPVCAAEGIELQAWGPLGQGRFSSGDD-----------------GAAGVV
+GEVAAELGVSREAVVLAWLLRLPWGVRPVIGTQDPERVAACAEAASVAEAMDSAQWHRLW
+TAARGRPLP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001763.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001763.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4968a4a1680a6b68ba40b5444f49f56b1dc8455a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001763.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_02629
+M------SSSE-PAAPAALPRAVGILGAGRAGTGVARAIARIPRLSPGLPEVRALVAGTR
+RPSAVQRHLTVYAPAAQAVAAEELAARAEVIVVAVPREDLDDVDPLALAGPGVRAVVDMT
+NTWGEELLPAWLEA----GPDDAPGTARIAARWAAAGLEVPVVRALSEVSHHDLDVHGRA
+AAPRRALAVGTVPAADASDPGAVVAARDAVAALVTAMGFDAVPYEGLERAAVLEPGGAGF
+GVAHDARELAALLGAGPRG
+>KBS0714_MOLHKGIG_00340
+M------SSSEAAAPAHALPRVVGILGAGRAGTALARAIARIPRLSPGTAAPRVMVAGTR
+RPAAVQRHLTIYAPEAVAVSAEDLAAEAELVVVAVPREALDDVDPLALAGPATRAVVDLT
+NTWGDEPVPAWLDD------DAAPGTTRIAERWAAAGLRVPVVRAFSEISHHDLGDAGRA
+TAPRRALAVGTEPADATADPAAVAAARDTVIALVTAMGFDAVPYTGLDRAGVLEPGAAGF
+GTAHDAGRLAALLADAPTG
+>KD337_NAFOICDF_02484
+MPHDAAPRPDQ-PAAFESLPASVGILGAGRAGTALARAIARIRVLHPGTAAPRVVLAATR
+SPAAVRRHLAIHAPGAEAAHPGDLATDTELTVVAVPREELDEVDPAWLAGPRTLAVVDMT
+NTWGDELVPDWLAAAAAPGLPTMPGSAAIAAHWAEAGLTAPVVRAFSEVSHHELDRDGRA
+QPPLRALGVG----ADSPGP-----ARAAVAALVTAMGFEPVEYAPLARAAALEPGTRAF
+TRPLPADELARELA-----
+>SA211_MHAAABBN_00056
+M------SSSEAAAPADALPRVVGVLGAGRAGTALARAIARIPRLSPGTAAPRVMVAGTR
+RPAAVQRHLTIYAPEAVAVSAEDLAAEAELVVVAVPREALDDVDPLTLAGPATRAVVDMT
+NTWGDEPVPAWLDD------DGAPGTTRIAERWAAAGLRVPVVRAFSEISHHDLGDAGRA
+TAPRRALAVGTEPADATADSAAVAAARDTVIALVTAMGFDAVPYTGLDRAGVLEPGAAGF
+GTAHDAGRLAALLADAPIG
+>TT9_LFPAFLNI_00347
+M------SSSE-AAPADALPRVVGILGAGRAGTALARAIARIPRLSPGTAAPRVMVAGTR
+RPAAVQRHLTIYAPEAVAVSAEDLAAEAELVVVAVPREALDDVDPLALAGPATRAVVDLT
+NTWGDEPVPDWLDG------DGSPGTARIAARWAAAGVRVPVVRAFSEISHHDLGDAGRA
+TAPRRALAVGTEPADTAADPAAVAAARDTVVALVTAMGFDAVPYTGLDRAGVLEPGAAGF
+GTAHDAGRLAALLADAPTG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001767.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001767.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6300e3eeef859e7333be5cc94f1c68ad6595c403
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001767.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02680
+MAWWPFRG-PSGAPRD-DDASTAGRASLEAAVHSLRALMTAERHRLRPDSRDLAWTITER
+AAEYGPAWDRVSAQRPAEAQELLLLLSHRLEPALRDFLDLPDSQKPRHADELHGRLSELQ
+TEAQRLGRRLTRALSSRLRARGEL----
+>KBS0714_MOLHKGIG_00335
+MSWWPFPR-PSASPSP-DDDGAPAAAELEEAVAALRQLLRAERHRLRPDSWALAWEMVEQ
+AAEYAPAWTRLQRTRPVETQELVLALTGRLEPLLCDFLALPDSEKPTHADAVHARLREQG
+TEHGRLRRRLTRALTARLRAGEEL----
+>KD337_NAFOICDF_02492
+MAWWARRRLSSSGPAPLGKPPLVAAEELRRLTDELSEILQRESARIRPDAAAVLRSFLNR
+SRALLPAWDRTAPARSAEALAAYELLRDRVLPGLQDWLCLPDHLKPVHADDLLADAQAWE
+GDLSHHAARLTQVLTARGRAVRELDERQ
+>SA211_MHAAABBN_00051
+MSWWPFLR-SSASPSP-DDDGAPAAAELEEAVAALRRLLRAERHRLRPDSWALAWEMVEH
+AAEYGPAWTRLQRTRPVETQELVLALTGRLEPLLRDFLALPDSEKPAHADAVHARLREQS
+TEHGRLRRRLTRALTARLRAGEEL----
+>TT9_LFPAFLNI_00342
+MSWWPFLH-SSASPSP-DDDGAPAAAELEEAVAALRRLLRAERHRLRPDSWALAWEMVEH
+AAEYGPAWTRLQRTRPVETQELVLALTGRLEPLLRDFLAIPDSEKPAHADAVHARLREQS
+TEHGRLRRRLTRALTARLRAGEEL----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001768.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001768.fa
new file mode 100644
index 0000000000000000000000000000000000000000..96a9c98fd5534f4648fe140faf397bebf557dea0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001768.fa
@@ -0,0 +1,40 @@
+>KBS0714_MOLHKGIG_02045
+MTTSETTSETTSETPDTSATTHGRPTERRGHVAELLSATVARQPDAVALRIGEARMTYRELDQVTAATAGWLRHRGVGPG
+DRVAVMLPNVPAFVAVYEALMRLGAVMVPLNPLFTARELGYFLEDSGARMLWAMPGLPAVDEVAGNVDV---EVVTLDLE
+AVGRECAAEGIAPVTEITPRDPDD-DAVLLYTSGTTGRPKGARLTHTNLRSNAMATATGLGRLGPDDVVFAALPMFHVFG
+LSVVLNGAVFAGSTLSLMPRFVPEAAYDQLQDHGITFLPGVPTMHGAFLSVARARREAGAEPADFSRLRMPLSGGASLPV
+ETLRAAEKLFGVPVLEGYGLSENAGACFFNPVDAPTRPGTVGRPVDGFEFRIVAMDGTEVPEEDLETSGELRIRGEGIMA
+GYWGRPEDTEAAFDEDGWFRTGDIARRDEAGYVMIVDRLKDVIIRGGMNVYPREVEEVLYEHPDVVEAAVVGVPDERLGE
+EIAAFVSLAPGSTATGEELQAFAAERLARYKQPREVTIMDGLPKNATGKILRRELRQG
+>KD337_NAFOICDF_00735
+M--------TTSETPDTSTTTHGRPTERRGHVAELLSATVARQPDAVALRIGEARMTYRELDQVTAATAGWLRHRGVGPG
+DRVAVLLPNVPAFVAVYEALMRLGAVMVPLNPLFTARELGYFLADSGARMLWAMPGLQAVDEVAGNVDV---EVVTLDLE
+AVGRECAAEGIAPVTEITPRDPDD-DAVLLYTSGTTGRPKGARLTHTNLRSNAMATATGLGRLGPDDVVFAALPMFHVFG
+LSVVLNGAVFSGSTLSLMPRFEPEAAYDQLQDHGVTFLPGVPTMHGAFLTVARARREAGAEPADFSRLRMPLSGGASLPV
+DTLHAAEKLYGVPVFEGYGLSENAGACFFNPVDAPTRPGTVGRPVDGFEFRIVAMDGTEVPEEDLETSGELRIRGEGIMA
+GYWGHPEDTVAAFDADGWFRTGDIARRDEAGYVLIVDRLKDVIIRGGMNVYPREVEEVLYEHPDVVEAAVVGVPDERLGE
+EIAAFVSLAPGSTVTGEELQAFAAERLARYKQPREVTVLDGLPKNATGKILRRELR-G
+>KD337_NAFOICDF_00741
+M---------NSALPATDP--------HRGDVCALLEAGHDRDPRAVAWREDGVDTTYAELLELVQATAGVLRRQGVGPG
+DRVALLMPNTLAFPAVYYGALWLGAVVVPLNPLSTDRELEYFLTDSQAVLLWSMRGTSAAAEAAQAVGVPHLQSSPADLR
+DV-----VAGAEPVRERTPRTSEEADAVVIYTSGTTGQSKGARLSHRTVASSAVLTSEALDWLQAGHTVLGVLPFFHVFG
+MSAALNMPLYTGCRNSVVTRFAPHTALEQVVRDEVRALPAVPTMIGALLRALRSARAKG-DDVDLSALRYILSGGAPLPV
+ETLHEAEEEFGVPVREGYGLTESCGPVSFNPMLRPSRAGTVGQPLPGVEFRLVTTDGVEVPAGDTETPGELRIHGPVLMT
+GYLGEPQADAASFDDEGWLRTGDVATRDEEDYYRIVGRLKDIIIHGGYNVYPREVEEAFYEHPAVSEAAVLGVPDERFGE
+KVVAYVALQDGPEVEVAELNAFVRERLASYKWPSQVTVMDALPKNTTGKIVKDLLR--
+>SA211_MHAAABBN_01751
+M--------TTSETPDTSATTHGRPTERRGHVAELLSATVARQPDAVALRIGEARMTYRELDQVTAATAGWLRHRGVGPG
+DRVAVLLPNVPAFVAVYEALMRLGAVMVPLNPLFTARELEYFLEDSGARVLWAMPGLPAVDEVAGNVDV---EVVTLDLE
+AVGRECAAEGIAPVTEITLRDPDD-DAVLLYTSGTTGRPKGARLTHTNLRSNAMATATGLGRLGPDDVVFAALPMFHVFG
+LSVVLNGAVFAGSTLSLMPRFVPEAAYDQLQDHGVTFLPGVPTMHGAFLSVARARREAGAEPEDFSRLRMPLSGGASLPV
+ETLRAAEKLFGVPVLEGYGLSENAGACFFNPVDAPTRPGTVGRPVDGFEFRIVAMDGTEVPEEDLETSGELRIRGEGIMA
+GYWGRPEDTAAAFDQDGWFRTGDIARRDEAGYVMIVDRLKDVIIRGGMNVYPREVEEVLYEHPDVVEAAVVGVPDERLGE
+EIAAFVSLAPGSAVTGEQLQAFAAERLARYKQPREVTVLDGLPKNATGKILRRELRQG
+>TT9_LFPAFLNI_01979
+M--------TNSETPDTSATTVGRPTERRGHVAELLSATVARQPDAVALRIGEASMTYRELDQVTAATAGWLRHRGVGPG
+DRVAMMLPNIPAFVAVYEALMRLGAVMVPLNPLFTARELEYFLEDSGARMLWAMPGLPAVDGVAGNVDV---EVVTLDLE
+AVGRECDAEGITPVTEITPRDPDD-DAVLLYTSGTTGRPKGARLTHTNLRSNAMATATGLGRLGPDDVVFAALPMFHVFG
+LSVVLNGAVFAGSTLSLMPRFVPEAAYDQLQDHGITFLPGVPTMHGAFLSVARARREAGTEPADFSRLRMPLSGGASLPV
+ETLRAAETLFGVPVLEGYGLSENAGACFFNPVDAPTRPGTVGRPVDGFEFRIVAMDGTEVPEEDLETSGELRIRGEGIMA
+GYWGRPEDTEAAFDEDGWFRTGDIARRDEAGYVMIVDRLKDVIIRGGMNVYPREVEEVLYEHPDVVEAAVVGVPDERLGE
+EIAAFVSLAPGSAVTGEELQAFAAERLARYKQPREVTILDGLPKNATGKILRRELRQG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001769.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001769.fa
new file mode 100644
index 0000000000000000000000000000000000000000..aac1203885c9702718c50736dfa0308e5819477a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001769.fa
@@ -0,0 +1,41 @@
+>SA211_MHAAABBN_00329
+MTAPHIVDPERLLREALGEASPDLLRHLLQTIINALLSADADAVCGAEYGTASESRTTQR
+NGYRHRPLDTRAGTIDVAIPKLRAGTYFPDWLLERRKRAESALITVVADCYLAGVSTRRM
+DKLVRQLGIDSLSKSQVSRMATELDEHIEAFRHRPLSDTGPFVFLAADALTMKVREGGRV
+INAVAMVATGVNADGRREVLGLRVATTESGAAWNEFFADLVARGLTGVKLVTSDSHRGLV
+EAVAANLPGAVWQRCRTHYAANLMAVTPKSMWPAVKAMLHSVYDQPDGPAVHAQFDRLLD
+YVQDRLPAVTAHLDAAREDILAFTGFPKDVWSQIWSNNPAERLNREIRRRTDSVGIFPNR
+EAVIRLVGAVLAEQTDEWAEGRRYLGLELLARCSGLDADTTSTTILGTEVMPTLET
+>SA211_MHAAABBN_00368
+MTAPHIVDPERLLREALGEASPDLLRHLLQTIINALLSADADAVCGAEYGTASESRTTQR
+NGYRHRPLDTRAGTIDVAIPKLRAGTYFPDWLLERRKRAESALITVVADCYLAGVSTRRM
+DKLVRQLGIDSLSKSQVSRMATELDEHIEAFRHRPLSDTGPFVFLAADALTMKVREGGRV
+INAVAMVATGVNADGRREVLGLRVATTESGAAWNEFFADLVARGLTGVKLVTSDSHRGLV
+EAVAANLPGAVWQRCRTHYAANLMAVTPKSMWPAVKAMLHSVYDQPDGPAVHAQFDRLLD
+YVQDRLPAVTAHLDAAREDILAFTGFPKDVWSQIWSNNPAERLNREIRRRTDSVGIFPNR
+EAVIRLVGAVLAEQTDEWAEGRRYLGLELLARCSGLDADTTSTTILGTEVMPTLET
+>SA211_MHAAABBN_01110
+MTAPHILDPAGLLSEALSEASPDMMRHLLQTMINTLLSADADAVVGAEWGKPTPTRSAQR
+NGYRHRDLDTRVGTVDVAIPKLRSGTYFPEWLLERRKRAESALITVVADCYLAGVSTRRM
+DKLVKTLGINALSKSQVSRMAADLDEHVESFRHRPLDEAGPLTFVAADALTMKVREGGRV
+VNAVVLLATGVNGDGHREVLGMRVATSETGTAWNEFFADLVARGLAGVRLVTSDAHAGLK
+DAIAANLPGATWQRCRTHYAANLMGITPKSMWPAVKAMLHSVYDQPDATAVNAQFDRLLD
+YVSEKLPAVAEHLGDARADILAFTTFPKDVWTQIWSNNPAERLNREIR------------
+--------------------------------CK--------------------RP
+>SA211_MHAAABBN_01967
+MTAPHIVDPERLLREALGEASPDLLRHLLQTIINALLSADADAVCGAEYGTASESRTTQR
+NGYRHRPLDTRAGTIDVAIPKLRAGTYFPDWLLERRKRAESALITVVADCYLAGVSTRRM
+DKLVRQLGIDSLSKSQVSRMATELDEHIEAFRHRPLSDTGPFVFLAADALTMKVREGGRV
+INAVAMVATGVNADGRREVLGLRVATTESGAAWNEFFADLVARGLTGVKLVTSDSHRGLV
+EAVAANLPGAVWQRCRTHYAANLMAVTPKSMWPAVKAMLHSVYDQPDGPAVHAQFDRLLD
+YVQDRLPAVTAHLDAAREDILAFTGFPKDVWSQIWSNNPAERLNREIRRRTDSVGIFPNR
+EAVIRLVGAVLAEQTDEWAEGRRYLGLELLARCSGLDADTTSTTILGTEVMPTLET
+>SA211_MHAAABBN_02017
+MTAPHIVDPERLLREALGEASPDLLRHLLQTIINALLSADADAVCGAEYGTASESRTTQR
+NGYRHRPLDTRAGTIDVAIPKLRAGTYFPDWLLERRKRAESALITVVADCYLAGVSTRRM
+DKLVRQLGIDSLSKSQVSRMATELDEHIEAFRHRPLSDTGPFVFLAADALTMKVREGGRV
+INAVAMVATGVNADGRREVLGLRVATTESGAAWNEFFADLVARGLTGVKLVTSDSHRGLV
+EAVAANLPGAVWQRCRTHYAANLMAVTPKSMWPAVKAMLHSVYDQPDGPAVHAQFDRLLD
+YVQDRLPAVTAHLDAAREDILAFTGFPKDVWSQIWSNNPAERLNREIRRRTDSVGIFPNR
+EAVIRLVGAVLAEQTDEWAEGRRYLGLELLARCSGLDADTTSTTILGTEVMPTLET
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001770.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001770.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b16445bbea4e1985cb656c0330de26f86af39e59
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001770.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00006
+MLEISQVSKTFFPNTVNERRALQGIDLHLAEGDFVTVIGSNGAGKSTILNTIAGKLLPDT
+GTVKVSGKDVTRMADHRRAAWIGRVFQDPTAGTAPNLTIEENMALAWRRGHTRGLARGVS
+RSRRGLFREELTKLELGLEDRLTAKVGLLSGGQRQALSLLMATFSGPKILLLDEHTAALD
+PSRAELVTRLTQQVVAEHRLTTLMVTHNMSQALEVGNRLIMMHDGRIILELDEAQKAGRT
+PADLLAEFAKIKGAVVDDKTMLS
+>KBS0714_MOLHKGIG_00329
+MLEISQVSKTFFPNTVNERRALQGIDLHLAEGDFVTVIGSNGAGKSTILNTIAGKLLPDT
+GTVAVGGKDVTRMPDHRRAASIGRVFQDPTAGTAPNLTIEENMALAWRRGHARGLSRGVS
+RARRAMFRDELTKLELGLENRLTAKVGLLSGGQRQALSLLMATFSGPKILLLDEHTAALD
+PSRAELVTRLTRQVVAEHRLTTLMVTHNMSQALEVGNRLIMMHDGRIILELDEQEKAGRT
+PADLLAEFAKIKGAVVDDKTMLS
+>SA211_MHAAABBN_00045
+MLEISQVSKTFFPNTVNERRALQGIDLHLAEGDFVTVIGSNGAGKSTILNTIAGKLLPDT
+GTVAVGGKDVTRMPDHRRAASIGRVFQDPTAGTAPNLTIEENMALAWRRGHARGLSRGVS
+RARRAMFRDELTKLELGLENRLTAKVGLLSGGQRQALSLLMATFSGPKILLLDEHTAALD
+PSRAELVTRLTRQVVAEHRLTTLMVTHNMSQALEVGNRLIMMHDGRIILELDEQEKAGRT
+PADLLAEFGKIKGAVVDDKTMLS
+>TT9_LFPAFLNI_00336
+MLEISQVSKTFFPNTVNERRALQGIDLHLAEGDFVTVIGSNGAGKSTILNTIAGKLLPDT
+GTVAVGGKDVTRMPDHRRAASIGRVFQDPTAGTAPNLTIEENMALAWRRGHARGLSRGVS
+RARRAMFRDELTKLELGLENRLTAKVGLLSGGQRQALSLLMATFSGPKILLLDEHTAALD
+PSRAELVTRLTRQVVAEHRLTTLMVTHNMSQALEVGNRLIMMHDGRIILELDEQEKAGRT
+PADLLAEFGKIKGAVVDDKTMLS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001774.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001774.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d236d08edec8f7230a57214c9ee7eda5b3adc8d1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001774.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00068
+MSETTTDPGLPDDVGVDAGADPTGTAPAPAALEESMPHPSDPSVTPFLMFEGDAGAAMDA
+YLSVFVEHLPVTEVRRDLFDGSSPRGAEWAGKVLHGELEVAGQRLRFFDSFTSHGFTFTP
+AISLFVELPDPTAVDAVHDALIAGGGQDYMPPGDYGFSRRFAWVGDRFGVTWQLNAA
+>KBS0714_MOLHKGIG_00286
+---MSIDAAPPEDG----GTAPTGTSPAPEALEDALPHPSDPSVTPFLLFEGDAGAAMDA
+YLTAFVEYLPVTEVRRDLFDDSSPRGAEWAGKVLHGELEIAGQRLRFFDSFTPHGFTFTP
+AISLFVELPDATAVDAIHDTLLAGGGRDYMPPDDYGFSRRFAWVGDRFGVTWQLNAA
+>SA211_MHAAABBN_02308
+---MSIDAAPPEDV----GTAPTGTSPAPEALEDSLPHPSDPSVTPFLMFEGDAGAAMDA
+YLTAFVEHLPVTEVRRDLFDDSSPRGAAWAGKVLHGELEIAGQRLRFFDSFTPHGFTFTP
+AISLFVELPDATAVDAVHDALLAGGGRDYMPPDDDGFSRRFAWVGDRFGVTWQLNAA
+>TT9_LFPAFLNI_00292
+---MSIDAAPPEDV----GTAPTGTSPAPEALEDSLPHPSDPSVTPFLLFEGDAGAAMDA
+YLTAFVEHLPVTEVRRDLFDESSPRGAAWAGKVLHGELEIAGQRLRFFDSFTPHGFTFTP
+AISLFVELPDATAVDAIHDALLAGGGRDCMPPDDDGFSRRFAWVGDRFGVTWQLNAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001776.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001776.fa
new file mode 100644
index 0000000000000000000000000000000000000000..686746300591a4daffac9995823775bfb19e5b89
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001776.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00083
+MDRDAVNALAEEYSRGIGQALSMGVAAEPEAQLTVPFAAFLSRFAQEVELGRLDLLREAQLDGVRPDFAAALDGRPCGWI
+ELKAPGHTVVGERWRGREKSQWALLSQLDALLVSNGELLALYVAGAPVETCALPVDGAAGWDPDRLRRVLEQFTLAQPRP
+ITRVSQLADRLAPLARFLRERLAEGLEHSYDSVVEAKAAWDHTMQHTTSPEEFSGDVAQVVAYSMAIAGLSGQADRNADG
+VVSLEEAKHALETAHRNVLAASLGPILGIPALMQHIAPEVGAITRLVAGMDVAAIERSTDSRGEPWLWFYEDFLQRYDPE
+ARSRAGVYYTPISVVECQVRVVDALLRERFGQNLGFGAPSVVTLDPATGSGTYPLAIIDRAESVAREERGDAGAKQVAMN
+LTKNLLAFELLPGPYSVAHLRIGQRLAEAQGHAFQAEEIGVYLTDTLEDPSAGMPTGLFGDARVLAEAAESARRVKRDQQ
+ITVAIGNPPYDRVTSGTGGWVEQGSGSGDALFDDVIKPAQDSGVIFSAQASLYNLYVYFWRWAIWKAFQQDPKDHAVISF
+ITASSWLTGPAFVGLRRLAQATASEIWVMDLGGEGRGARKEENVFDIQSPVAIVTLVRTGKASREAKVFYRRFRGSRAEK
+FTALDRIQRLDAADG-WEQIAAPGGAPFMPASGGEDWTAMPQLADLFPWQQPGIMYNRAWPVASDQNTLRRRWQELLSDD
+DADARAGKYVTGNSGRTIHTAVAGLPTLASLPADAEPRPIVRVAWRSFDRQWTFDDPRLINLERPALWQALSDRQLFLVS
+PKTARINGGPAVTVSTAVPDKHHYVGSFGGKDVIPLYRDAAAAEPNVTVGLLELLADRLGHDVTPEDLAAYVMAVAAHDG
+YAQTFDEALETSPVRIPFTADASLWDAAVALGERLLWLQTYGERFTSADRPRGRVPRVPGLGWSEAVTHIPADTASLSYD
+AASRELRVGDGVVTGVSPEVRAFSVSGMNIVDKWLGARTAKGIGRAAGKAATPLDRIRPTEWADEWNDELLDLLRVLTET
+VALGDQQAELLAAILAGELITAADLPVPTAAERKVPKTIKRGVSPHQEGLL
+>KBS0714_MOLHKGIG_00273
+MIDAPLAQLAETYARDVRLASTSGVSAEPEAQLTVPVSEFLRAFSSVTGIGDLSLLREAQLDGVRPDFAALIDGRPCGWV
+ELKAPGHTVIGEKWRGREKGQWDLLSQLDALLVSNGDEIALYVSGSPVDTAFLPVDGVAGWDADRLRTVLEQFTLAQPRP
+ITRVSQLADRLAPLARFLRERLQEGLSNNYRSVREAKAAWDHTVHHTTTDAQFAGDVAQVVAYSMAIAGLSGQADRNADG
+VVTLEEAKHALETAHRNVLAASLGPIIGIPALMEYIAPEVGAIMRLVSSMDVAAIERSTDSRGEPWLWFYEDFLQRYDPA
+ARNRAGVYYTPISVVQCQVRVVDALLRERFGQTLGFGAPSVVTLDPATGSGTYPLAVIDRAEAAAREERGPAGVAQVAKN
+LTKNLLAFELLPGPYSVAHLRIGQRLAEAQGHAFQAEEIGVYLTDTLEDPSAGMAEGLFGDARVLAEAAEAARRIKRDRR
+ITVAIGNPPYDRVTSGTGGWVEHGDGE-DALFDDVIGPAQEQGVIFSAQASLYNLYVYFWRWAIWKAFQQDPGDQAIISF
+ITASSWLTGPAFVGLRDLARRTASEIWVMDLGGEGRGARQEENVFDIQTPVAIVTLVRTGKAAREASVYYRRFRGTRAEK
+FAALDEVARLDPDDGTWECLPGGAGDPLAPASGGEDWAAMPALADLFPWQQPGIKYNRAWPVAPDQDTLQRRWRELLADP
+SADARAEKYVTGHSGRTIHTAVSGLTPLAALPADAEHRPITRVAWRSFDRQWTFDDPRLINLERPALWQALSDRQLFFVS
+PKTARISGGPAVTVATAVPDLHYFVGSYGGKDVIPLYRDAEAAQPNVTGGLLPLLGERYGREVTPEDLAAYVMGIAGHDA
+YVQRFDEALEGSPVRVPLTVDPALFARAVELGKRLLWLQTYGERFTGVDRPAGRVPRIPGLGWEAPVTALPASPRAVSYD
+PATQRLKVGDGVVTGVSPEVRAFAVSGMNILDKWLGARTATGIGRAAGKAATPLDRIRPTEWADEWNDELLDLLRVLTET
+VSLGGDQADLLDEILARDLIPANELPEPTPAERKVPKTIKRDFSTAQEEMF
+>SA211_MHAAABBN_02288
+MIDAPLAQLAETYARDVRLASTSGVSAEPEAQLTVPVSEFLRAFSSVTGIGDLSLLREAQLDGVRPDFAALIDGRPCGWV
+ELKAPGHTVIGEKWRGREKGQWDLLSQLDALLVSNGDEIALYVSGSLVDTAFLPVDGVAGWDADRLRTVLEQFTLAQPRP
+ITRVSQLADRLAPLARFLRERLQEGLSNNYRSVREAKAAWDHTVHHTTTDAQFAGDVAQVVAYSMAIAGLSGQADRNADG
+VVTLEEAKHALETAHRNVLAASLGPIIGIPALMEYIAPEVGAIMRLVSSMDVAAIERSTDSRGEPWLWFYEDFLQRYDPA
+ARNRAGVYYTPISVVQCQVRVVDALLRERFGQTLGFGAPSVVTLDPATGSGTYPLAVIDRAEAAAREERGPAGVAQVAKN
+LTKNLLAFELLPGPYSVAHLRIGQRLAEAQGHAFQAEEIGVYLTDTLEDPSAGMAEGLFGDARVLAEAAEAARQIKRDRR
+ITVAIGNPPYDRVTSGTGGWVEHGDGE-DALFDDVIGPAQEQGVIFSAQASLYNLYVYFWRWAIWKAFQQDPGDQAIISF
+ITASSWLTGPAFVGLRDLARRTASEIWVMDLGGEGRGARQEENVFDIQTPVAIVTLVRTGKAAREASVYYRRFRGTRAEK
+FAALDEVARLDPDDGTWECLPGGAGDPLAPASGGEDWAAMPALADLFPWQQPGIKYNRAWPVAPDQDTLQRRWRELLADP
+SADARAEKYVTGHSGRTIHTAVSGLTPLAALPADAEHRPITRVAWRSFDRQWTFDDPRLINLERPALWQALSDRQLFFVS
+PKTARISGGPAVTVATAVPDLHYFVGSYGGKDVIPLYRDAEAAQPNVTGGLLPLLGERYGREVTPEDLAAYVMGIAGHDA
+YVQRFDEALEGSPVRVPLTVDPALFARAVELGKRLLWLQTYGERFTGVDRPAGRVPRIPGLGWEAPVTALPASPRAVSYD
+PATQRLKVGDGVVTGVSPEVRAFAVSGMNILDKWLGARTATGIGRAAGKAATPLDRIRPTEWADEWNDELLDLLRVLTET
+VSLGGDQADLLDEILAGDLIPANELPEPTPAERKVPKTIKRDFSTAQEEMF
+>TT9_LFPAFLNI_00271
+MIDAPLAQLAETYARDVRLASTSGVSAEPEAQLTVPVSEFLRAFSSVTGIGDLSLLREAQLDGVRPDFAALIDGRPCGWV
+ELKAPGHTVIGEKWRGREKGQWDLLSQLDALLVSNGDEIALYVSGSLVDTAFLPVDGVAGWDADRLRTVLEQFTLAQPRP
+ITRVSQLADRLAPLARFLRERLQEGLSNNYRSVREAKAAWDHTVHHTTTDAQFAGDVAQVVAYSMAIAGLSGQADRNADG
+VVTLEEAKHALETAHRNVLAASLGPIIGIPALMEYIAPEVGAIMRLVSSMDVAAIERSTDSRGEPWLWFYEDFLQRYDPA
+ARNRAGVYYTPISVVQCQVRVVDALLRERFGQTLGFGAPSVVTLDPATGSGTYPLAVIDRAEAAAREERGPAGVAQVAKN
+LTKNLLAFELLPGPYSVAHLRIGQRLAEAQGHAFQAEEIGVYLTDTLEDPSAGMAEGLFGDARVLAEAAEAARQIKRDRR
+ITVAIGNPPYDRVTSGTGGWVEHGDGE-DALFDDVIGPAQEQGVIFSAQASLYNLYVYFWRWAIWKAFQQDPGDQAIISF
+ITASSWLTGPAFVGLRDLARRTASEIWVMDLGGEGRGARQEENVFDIQTPVAIVTLVRTGKAAREASVYYRRFRGTRAEK
+FAALDEVARLDPDDGTWECLPGGAGDPLAPASGGEDWAAMPALADLFPWQQPGIKYNRAWPVAPDQDTLQRRWRELLADP
+SADARAEKYVTGHSGRTIHTAVSGLTPLAALPADAEHRPITRVAWRSFDRQWTFDDPRLINLERPALWQALSDRQLFFVS
+PKTARISGGPAVTVATAVPDLHYFVGSYGGKDVIPLYRDAEAAQPNVTGGLLPLLGERYGREVTPEDLAAYVMGIAGHDA
+YVQRFDEALEGSPVRVPLTVDPALFARAVELGKRLLWLQTYGERFTGVDRPAGRVPRIPGLGWEAPVTALPASPRAVSYD
+PATQRLKVGDGVVTGVSPEVRAFAVSGMNILDKWLGARTATGIGRAAGKAATPLDRIRPTEWADEWNDELLDLLRVLTET
+VSLGGDQADLLDEILAGDLIPANELPEPTPAERKVPKTIKRDFSTAQEEMF
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001777.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001777.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0b3078c399606a9c075349c75848af6932f71ec1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001777.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00084
+MDALGWTTLAISLLALVAAGWSAFESWRLGRVERQRDQRQEDRERQEQARQVAAWMCVVA
+EREHNLAATVRRRWFLAIENSSQVPVYDGHATITSKYPVPALEAAMFPPGRTYFELGKNE
+WGYGVQSDELAIVPRPLTNAERFRVTSLAFTDAAGTRWTRDEQGRLAEGPAAADTGAMST
+GT-
+>KBS0714_MOLHKGIG_00272
+MDAANVIALVVSVLALLAAAWSAVESWRLRQIEKGRDERQDLREKQEQARQVAAWMCVAA
+RINDEFGAPPTRRWFLAVENSSQVPVYGARATVASKYPVPDLTAAMLPPGRTYFELSKNE
+WGYGVQADELDVVPRPLTNAERFRVTAFTFTDAAGDRWSRDHQGRL-----SATSGKESE
+ATD
+>SA211_MHAAABBN_02287
+MDAANVIALVVSVLALLAAAWSAVESWRLRQIEKGRDERQDLREKQEQARQVAAWMCVAA
+RINDEFGAPPTRRWFLAVENSSQVPVYGARATVASKYPVPDLTAAMLPPGRTYFELSKNE
+WGYGVQADELDVVPRPLTNAERFRVTAFTFTDAAGDRWSRDHQGRL-----SATSGKESE
+ATD
+>TT9_LFPAFLNI_00270
+MDAANVIALVVSVLALLAAAWSAVESWRLRQIEKGRDERQDLREKQEQARQVAAWMCVAA
+RINDEFGAPPTRRWFLAVENSSQVPVYGARATVASKYPVPDLTAAMLPPGRTYFELSKNE
+WGYGVQADELDVVPRPLTNAERFRVTAFTFTDAAGDRWSRDHQGRL-----SATSGKESE
+ATD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001778.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001778.fa
new file mode 100644
index 0000000000000000000000000000000000000000..25789db49061f7c84fc22094ed812158c39cd720
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001778.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00116
+MYTRSRNDVEKVEWGGGTSERLLTAKDEMGFAVAHTIVRAGSSSKLQYRHHQEACYCIAG
+NGSVVEPDGTVHEITPGVIYVLPDHEPHDLRGGTEDMHLISVFNPAITGDEKHTLSEDGY
+SSY
+>KBS0714_MOLHKGIG_00253
+MYTRSRNDVEKVEWGGGTSERLITAKDEMGFAVAHTIVRAGSSSKLQYRNHKEACYCIAG
+NGSVVEPDGTVHEITPGVIYVLPDHEPHDLRGGTEDMHLISVFNPAITGDEKHTLSEDGY
+SSY
+>SA211_MHAAABBN_02265
+MYTRSRNDVEKVEWGGGTSERLITAKDEMGFAVAHTIVRAGSSSKLQYRNHQEACYCIAG
+NGSVVEPDGTVHEITPGVIYVLPDHEPHDLRGGTEDMHLISVFNPAITGDEKHTLSEDGY
+SSY
+>TT9_LFPAFLNI_00253
+MYTRSRNDVEKVEWGGGTSERLITAKDEMGFAVAHTIVRAGSSSKLQYRNHQEACYCIAG
+NGSVVEPDGTVHEITPGVIYVLPDHEPHDLRGGTEDMHLISVFNPAITGDEKHTLSEDGY
+SSY
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001782.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001782.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6ed1ff7833d899126a0a7bb43bbcafe0bee0e6a3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001782.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00161
+MTRTAPTRRRTTLAAAVAAAAALTISAAAPALSAP----GNGNGNGNGQSSASQGQARSNDLSTTRGNQVNDAAALAPHL
+LDQELAWEACDFGSPALNTRFGAIPGTACADVTVPRDWKDPQDGHTITVRVAKTETSKGNPDRQGIALVNPGGPGGSGLP
+WGPAMAERAPELAEQYDFIGFDPRGVGQSTALECTYTPNPEHDVWQDTKAQVDACLENELTPYITTEQTVYDMDFIRAVM
+GEEKTSYIGYSYGTWLGSWYQRVFPQHAHRFLLDSAVDVSRDGLQTTWNLQPRSRDRQFQDMMLPYVARQDAVYGLGTDP
+MEIRQRWEDAGGTRTILGQIVAGSYLLPAMYSTSQYPMAASMIAAFISIMETETAATDEAGMQAQLERITAEARATVPAA
+DRAAFDRFIEQGSEVVAERDELAAAVRTGQPVTFSGTFSAIRCQDGQWNTSEGYWTSWVNDLGRKAPWIAAFMGPSECMY
+WPAQTSMPSQPGGKDTPSAVIVQSELDAATPYEGGHRAAGVLRNTSLISVDNEGTHGLFPYRTECVDAPIRDYFLTGEMP
+AEKSLCEAHPLPGETQTHQVAGTPTHKGDIKISMRTDAVREANRITLDAIERQLLDSRAVTPDVEAFLER
+>KBS0714_MOLHKGIG_00219
+MTRTVPARRRTTLAAAV-AAVSLAVTAAAPALSAPGNGNGNGNGNG----SASQGQARSNDLSATRGNKVNDAAALAPHL
+VGQTLDWEACDFGSERLNARFNAIPGTACADVTVPRDWKNPEDGHTITLRVAKTETSKGNPERQGIALVNPGGPGGSGLP
+WGPAMAERAPELAEQYDFIGFDPRGVGQSTALECTYTPNPEHDVWQDTKAQVDACLENELTPYITTEQTVYDMDFIRAVL
+GEEKTSYIGYSYGTWLGSWYQRVFPQHTHRFLLDSAVDISRDGLQTTWDLQPRSRDRQFQDAMLPYVARHDEIFGLGDNP
+MQIRQRWEDVGGTRTQLGMIVAGSFLLPAMYDTSQYLDAGSVIAAYIRIMESEAAATDPAGQRTQIERILAEARASLPAE
+ERDSFDRFAARGLETVGEREQLVAATQAGDAVTFEGAFSAIRCQDGQWNTSQGYWTSWVDDLGRKAPWIGVLMGPSECMY
+WPAQTSMPAQPGGKGAPNTVIVQSELDAATPYEGGHRAAGVLRNTSLISVDNEGTHGLFPYRTECVDAPIRDYFLTGAQP
+AEKSLCDAVPLPLETQPVQVAGTPTHKGDIKISMRTDAVREANRITHDAIERQLIDSRAVTPDVEAFLED
+>SA211_MHAAABBN_02213
+MTRTVPARRRTTLAAAV-AAVSLAVAAAAPALSAP----GNGNGNG----SASQGQARSNDLSATRGNKVNDAAALAPHL
+VGQTLDWDACDFGSERLNARFNAIPGTACADVTVPRDWKNPEDGHTITLRVAKTETSKGNPERQGIALVNPGGPGGSGLP
+WGPAMAERAPELAEQYDFIGFDPRGVGQSTALECTYTPNPEHDVWQDTKAQVDACLENELTPYITTEQTVYDMDFIRAVL
+GEEKTSYIGYSYGTWLGSWYQRVFPQHAHRFLLDSAVDISRDGLQTTWDLQPRSRDRQFQDAMLPYVARHDEIFGLGDDP
+MQIRQRWEDVGGTRTQLGMIVAGSFLLPAMYDTSQYLDAGSVIAAYIRIMESEAAATDPAGQRTQIERILAEARASLPAE
+ERDSFDRFAARGLETVGEREQLVAATQAGDAVTFEGAFSAIRCQDGQWNTSQGYWTSWVDDLGRKAPWIGVLMGPSECMY
+WPAQTSMPSQPGGKGAPNTVIVQSELDAATPYEGGHRAAGVLRNTSLISVDNEGTHGLFPYRTECVDAPIRDYFLTGAQP
+AEKSLCDAVPLPLETQPVQVAGTPTHKGDIKISMRTDAVREANRITHDAIERQLIDSRAVTPDVEAFLED
+>TT9_LFPAFLNI_00220
+MTRTVPARRRTTLAAAV-AAVSLAITAAAPALSAP----GNGKGNG----SASQGQARSNDLSATRGNKVNDAAALAPHL
+VGQTLDWEACDFGSESLNARFNAIPGTACADVTVPRDWKNPEDGHTITLRVAKTETSKGNPERQGIALVNPGGPGGSGLP
+WGPAMAERAPELAEQYDFIGFDPRGVGQSTALECTYTPNPEHDVWQDTKAQVDACLENELTPYITTEQTVYDMDFIRAVL
+GEEKTSYIGYSYGTWLGSWYQRVFPQHAHRFLLDSAVDISRDGLQTTWDLQPRSRDRQFQDAMLPYVARHDEIFGLGDDP
+MQIRQRWEDGGGTRTQLGMIVAGSFLLPAMYDTSQYMSAGAVIAAYIRIMESEAAATDPAGQRAQIERILAEARASLPTE
+ERDSFDRFADRGLETVGEREQLIAATQAGDAVTFEGAFSAIRCQDGQWNTSQGYWTSWVDDLGRKAPWIGVLMGPSECMY
+WPAQTSMPSQPGGKGAPSTVIVQSELDAATPYEGGHRAAGVLRNTSLISVDNEGTHGLFPYGTECVDAPIRDYFLTGAQP
+AEKSLCDAVPLPLETQPVQVAGTPTHKGDIKISMRTDAVREANRITHDAIERQLIDSRAVTPDVEAFLED
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001783.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001783.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f04f5189dcf4dfe6acec05b4c94a83c0081e18df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001783.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00168
+MNTTADPRSRSASGPERA-----ASTSAAATPAGSAAPSAWGRSARLGGGTGRLVVVSLV
+FGVLLAAMLGVIAYGLAGTADPADPRRPWVLGLVVASGALPVLAGTVWMLLVDRATIKGA
+VRDPEESIESRWYDAAAGGAFHDLLVVLGLGTFVVSMTGWTAELSLVGAGLVLFMMADVA
+IRYRVQKRRG
+>KBS0714_MOLHKGIG_00217
+M--TANHSRHTAAADGQGAAAEHAGTGTATTDPRRDTRSRWGCSSRLGGGTGRLMGVSLA
+VGVVGALGLGSAAWATTVAAGHADS-LAWIAAGAMALNGLLFGLLLTWLALVDRHSIRGA
+DTNPEESIEGRWYEKATSGAFHDTLVVVGLGAAILSFGGYVISPAAVGAALFVLMGCAAA
+IRYQIQKRRG
+>SA211_MHAAABBN_02210
+M----------------------ATTPHTTTDLARDRRPRWGRSARLGGGSGRLILVSLV
+AGVVIALLIGAASYGLASSQGDAGPRFPAVTGAVMAASALPVGAALAWLFLVDRTTLRGA
+VRDTEETIEGRWLEKAQSGAFGDLLVVLGLGTFVVALAGWQPSLPLVGAGLLLFAGASVA
+VRYALQKRRG
+>TT9_LFPAFLNI_00217
+M----------------------ATTPHTTTDLARDRRPRWGRSARLGGGSGRLILVSLV
+AGVVIALLIGAASYGLASSQGDAGPRFPAVTGAVMAASALPVGAALAWLFLVDRTTLRGA
+VRDTEETIEGRWLEKAQSGAFGDLLVVLGLGTFVVALAGWQPSLPLVGAGLLLFAGASVA
+VRYALQKRRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001785.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001785.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2f5a7fb6014dde25f16fd523f9f31594067ae067
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001785.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_00194
+MTRPATPGRPARPQTVLTVVRTERLTPHMVRVSLGGDEFAAFHARWAEKGATDQYIKLLF
+ADPALGLTPPYDLDALRERLAPEQMPVRRTYSVRAVDVAAGTVDVDFVVHG---------
+-DDGLAGPWAASVQPGEQVCFGGPGGNYRPDPAADWHLFAGDEAALPAIAAGLEDLATTA
+PDAVGTALIEVEGPEDEQPVTAPAGVEVRWLHRGAEFTPQSTRWAAALREEPWREGRVHA
+FVHGEREQVKAARAYLADERGVDRRDLSVSAYWAFGRAEETFQAEKQTPLGQIFPDGTTG
+G
+>KBS0714_MOLHKGIG_00199
+M---------ARPQTVLTVVAARRLTPHLVRLTLGGEQFDAVHARWAEKGATDQYVKLLF
+ADPALGLEPPYDLDALRERLAPEQLPVRRTYTVRHMDAAARTMDVDFVVHGASDGGAAPG
+HDGGLAGAWAASEPVGQQVAFLGPGGAYRPDPTADWHLLAGDEAALPAIAAALEDLAATD
+AAAAGVALIEVTDAGDEVPLTAPAGVEVRWLHRGGPFTPETTRFAAAVEGAAWRDGRVHA
+FVHGEREQVKRVRAYLTDVRGVDRRQLSVSAYWAYGRAEDVFQAEKQTPVGQIFEDGATG
+G
+>SA211_MHAAABBN_02195
+M---------ARPQTVLTVVAAHRLTPHLVRLTLGGEQFDAVHARWAEKGATDQYVKLLF
+ADPALGLEPPYDLDALRERLAPEQLPVRRTYTVRRMDAAARTMDVDFVVHGASDDGAAPG
+RDGGLAGAWAASEPVGQQVAFLGPGGAYRPDPTADWHLLAGDEAALPAIAAALEDLAATD
+AAAVGVALIEVTDARDEVPLTAPAGVEVRWLHRGDPFTPETTRFAAAVEDAAWREGRVHA
+FVHGEREQVKRVRAYLTDVRGVDRRQLSVSAYWAYGRAEDVFQAEKQTPAGQIFEDGTTG
+G
+>TT9_LFPAFLNI_00202
+M---------ARPQTVLTVVAARRLTPHLVRLTLGGEQFDAVHARWAEKGATDQYVKLLF
+ADPALGLEPPYDLDALRERLAPEQLPVRRTYTVRHMDAAARTMDVDFVVHGASDGGAAPG
+HDGGLAGAWAASEPVGQQVAFLGPGGAYRPDPTADWHLLAGDEAALPAIAAALEDLAATD
+AAAAGVALIEVTDAGDEVPLTAPAGVEVRWLHRGGPFTPETTRFAAAVEGAAWRDGRVHA
+FVHGEREQVKRVRAYLTDVRGVDRRQLSVSAYWAYGRAEDVFQAEKQTPVGQIFEDGATG
+G
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001786.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001786.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2f70f2d3005fd29934b3097437473d13de4673b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001786.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00196
+M---------------TASR-LIPPAVDPASLPRDLPGLRAHFRPVVEEIARGALERDRA
+RLLPFEAVRALGCAGFSVLRVPREAGGPDVDVRTVTALLVDLAAADSNVAHLYRSHLGFL
+DAL-RFQPQPVRDRWHALVLAGATVGNASTERGGNALGTLNTRLTAPAGGDDDGAPGAAW
+TLTGTKYYATGSIFSSHTRVSAAVVRADGSLAPGRGFAVVPVDAPGVCLEDDWDGFGQRL
+TGTGTAVFEDVAVDPRDVLERIPGSPEAVHEAAWFQLILLAVLAGIARAARDDAAARVAA
+RVRTFNTGLGVPFREDPLIQEAVGRIAAKASAAEAVVLAAADALDASLAAGA--------
+-ATGADRWGFTGPVPPAFAEAELAVEHAQITVPELALGAAQELFLTGGASDTSVAKGLDR
+HWRNAQTVATHNPIAFRARAVGDYWINGT-LPEGLNAIGDAPAAPSSSAVDAAQPAPEPA
+EAGA-R
+>KD337_NAFOICDF_00148
+MPLTDPTDA-------PTPLGTVPPLVRPADLPRDLAGLRRHFAPVFARVAEGSRERDRR
+RILPFAEVRALNEAGFATLRVPAEAGGPGVDVRTAVALLIDLAEADANVAHLYRSHLGFL
+DSL-RFQPAAVRERWHARILAGATVGNASTEKGGNALGTLNTVLTPPAAGD------GPW
+TLTGTKFYATGSIFSSHTRVSAAQTDADGHPAPGRRFAVVPVEAPGVRLDDDWDGFGQRL
+TGTGTAVFDGVAVPPQDVLDRVPGSAEAVYEAAWFQLILLAVLAGIARAARRDAADAVAA
+RVRTFNTGLGLPFREDPLIQEAVGRIAAKAFTAEAAVLSAADALDAALADHD--------
+-A-GRTGSGAPEEVPASFTWAELAVEHAQVTVPELALGAAQELFLTGGASATSTAKGLDR
+HWRNAQTVATHNPIAFRARAIGDYWINGT-VPEGLNAIGDAPAASAPLG-D----APAPG
+EAA--R
+>KD337_NAFOICDF_00597
+M---------------TTPV-LDRPAPTSAADAPDTAELRARFAPVFARIAANEARRRDA
+AVPPHAAVRLLAETGFTALRLPRERGGSDATLTQLLDLLVDLAAADANLPQALHGHFMFT
+EQVARDVHPRLTDWWLDEVAAGKVFANALVDPPA------ATGLPGVTARRDPRDP-EAF
+LLTGTKQYSTGTLLADWTLVAAH--DDAGALQP----LVVEVAGPGVEARDDWDGIGQRG
+TASGTTVYTDAPAPAWRRVDLERPAAAPGYPFLW--LILAATQAGIAQRALDDFAEILRR
+RSRSYQHAASASPAHDPVLQHQLGAAAAQVRALRSVVLGAVPALEAAYTAAAGAAPAIGA
+AATESPDDGAAEAFEAAHTEAWVAAASASSVAADLTLRLTSDLFETAGASAVVAGPGLDR
+HWRNARVLASHTPLPHRRRQIGECLLHGTPAPHSADAVETASSTDADPSRDSVSPSPSTP
+AATKEQ
+>TT9_LFPAFLNI_00199
+MPLTDPTDASAPPAATPVPLGAVPPLERPADLPRDLAGLRRHFAPVFARIAEGSRERDRR
+RILPFEEVRALNEAGFATLRVPAEAGGPGVDVRTAVALLIDLAEADANVAHLYRSHLGFL
+DSL-RFQPEAVRERWHARILAGATVGNASTEKGGNALGTLNTVLTPAPAGD------GPW
+TLTGTKFYATGSIFSSHTRVSAAQTDADGRPAPGRRFAVVPVEAPGVRLDDDWDGFGQRL
+TGTGTAVFDGVAVPPQDVLDRAPGSAEAVYEAAWFQLILLAVLAGIARAARRDAADAVAV
+RVRTFNTGLGLPFREDPLIQEAVGRIAAKAFTAEAAVLSAADALDAALADHE--------
+-A-GRTGSGAPEEVPASFTWAELAVEHAQVTVPELALGAAQELFLTGGASATSTAKGLDR
+HWRNAQTVATHNPIAFRARAIGDFWINGT-VPEGLNAIGDAPAASAPLGAD----APASG
+EAA--R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001788.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001788.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6bff41d3e60b67390d85bb0567028d62d61633c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001788.fa
@@ -0,0 +1,33 @@
+>AS2_ACLBLIBL_00225
+MTAAQDAAVVAP----ALDPEELVDRIEAGHRLTAAEAVAVLDAPDAETFRLVAAASRLR
+ERHFGRTVKVNYLVSLKTGLCPEDCTYCSQRLGTEAQILKYTWLKPDEAVRQAGLGIAGG
+ASRVCMVASGTGPTDRDVDRVTEMIGRLKDEHPQVEVCACLGKLKDGQAERLKAAGVDAY
+NHNLNTAESHYESICTSHTYADRVDTVERATAAGLSSCSGLIAGMGETHAQLAEAVLALR
+ELDSDSIPVNFLMPFDGTPLAGHVQLTPLECLRILAVVRLACPDKELRIAGGREMHLRSL
+QAVGLQVANSIFLGDYLTSEGQDAEADLSMIADAGFTVLGA---AAAPADDDGAPDGGCC
+GG----GGCGEG--------GVEDASTRGGTSPSPSPAPRRRGAGTAEPANA
+>KBS0714_MOLHKGIG_00177
+MTATQDAPAVDPRPAAALDPEALVDRIEAGHRLTADEAVAVLDAPDADTFRIVAAASRLR
+EKHFGRTVKVNYLVSLKTGLCPENCTYCSQRLGTEAEILRYTWLKPEEAVRQAGLGIAGG
+ASRVCMVASGTGPTDRDVDRVAGMVGDLKAQHPDVEVCACLGFLKDGQAEKLKDAGVDAY
+NHNLNTAESHYESICTSHTYEQRVDTVQRAGAAGLSSCSGLIAGMGETHEQLVEAVLALR
+DLDSDSIPVNFLMPFDGTPLQGHQQLTPLECLRILAMVRLACPDKELRIAGGREMHLRSL
+QPVGLQVANSIFLGDYLTSEGQDAEADLQMIADAGFTVLGAEERARRATADDGAPAGGCC
+AGTDDAGPCGSGAAV-----AAEDVRPDTGAEGAVKPELRRRGAGTAEPANA
+>SA211_MHAAABBN_02170
+MTATQDAAAVDPRPAAALDPEALVDRVEAGHRLTAEEAVAVLDAPDADTFRIVAAASRLR
+EKHFGRTVKVNYLVSLKTGLCPENCTYCSQRLGTEAEILRYTWLKPEEAVRQAGLGIAGG
+ASRVCMVASGTGPTDRDVDRVAGMVGDLKAQHPDVEVCACLGFLKDGQAEKLKDAGVDAY
+NHNLNTAESHYESICTSHTYEQRVDTVQRAGAAGLSSCSGLIAGMGETHEQLVEAVLALR
+DLDSDSIPVNFLMPFDGTPLQGHQQLTPLECLRILAMVRLACPDKELRIAGGREMHLRSL
+QPVGLQVANSIFLGDYLTSEGQDAEADLQMIADAGFTVLGAEERARRATADDGAPAGGCC
+AGTDGAGSCGSGAAVASEAGAAEDARPDTGAEGTVKPELRRRGAGTAEPANA
+>TT9_LFPAFLNI_00169
+MTATQDAAAVDPRPADALDPEALVDRIEAGHRLTADEAVAVLDAPDADTFRIVAAASRLR
+EKHFGRTVKVNYLVSLKTGLCPENCTYCSQRLGTEAEILRYTWLKPEEAVRQAGLGIAGG
+ASRVCMVASGTGPTDRDVDRVAGMVGDLKAQHPDVEVCACLGFLKDGQAEKLKDAGVDAY
+NHNLNTAESHYESICTSHTYEQRVDTVQRAGAAGLSSCSGLIAGMGETHEQLVEAVLALR
+DLDSDSIPVNFLMPFDGTPLQGHQQLTPLECLRILAMVRLACPDKELRIAGGREMHLRSL
+QPVGLQVANSIFLGDYLTSEGQDAEADLQMIADAGFTVLGAEERAQQAAADDGAPAGCCG
+GGCV----------------GTHDNSKNGAAATPSKPVLRRRGAGTGAAANA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001791.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001791.fa
new file mode 100644
index 0000000000000000000000000000000000000000..67ac49c5c7a5280a24b6c239737c1a39acdd593d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001791.fa
@@ -0,0 +1,13 @@
+>AS2_ACLBLIBL_00253
+MTSTPYEDGIDQRELQEDLLAEPDSATDPGPQDGRDGQPVRGSSDDPQHWAGDGRAEDSL
+RNAESEAMHIQQDAEDRTRADEGDVEIL
+>KBS0714_MOLHKGIG_00132
+MTDVPFEDREDERELETDLLADPNAAGDPEPEDGRDGQPVRGGSDDPQHWAGEGRAPDSL
+RNAESAAMHIEEDAQDRTRADEGDVEIL
+>SA211_MHAAABBN_02146
+MTDVPFEDREDERELETDLLADPNAAGDPEPEDGRDGQPVRGGSDDPQHRAGEGRAPDSL
+RNAESAAMHIEEDAQDRTRADEGDVEIL
+>TT9_LFPAFLNI_00140
+MTDVPFEDREDERELETDLLADPNAAGDPEPEDGRDGQPVRGGSDDPQHRAGEGRAPDSL
+RNAESAAMHIEEDAQDRTRADEGDVEIL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001796.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001796.fa
new file mode 100644
index 0000000000000000000000000000000000000000..56501506729a9caa03cc2dbc6e8a5c5044d5e531
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001796.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00351
+MDDPVDARLAAEVSRDPRATLAQLSERVGLSASAVQARLRKLESTGVITGYQAILDPEAV
+GKPLAAFIEITPLDPRQPDDAPELLEPIAAIEACHSVAGDAAYMLFVRVGSPRELEALVS
+EIRHTASVNTRTTVVLQTFYEHRPMLPLPDAGE
+>KBS0714_MOLHKGIG_00052
+MDDPVDARLAAAVSHDPRATLAQLSERVGLSTSAVQARLRRLESTGVITGYRALLDPEAV
+GRPLSAFIEISPLDPRQPDDAPELLESIAAIEACHSVAGDAAYILFVRVGSPRELEALVT
+EIRQTASVATRTTVVLQTFYEHRPMLELP-AED
+>SA211_MHAAABBN_02065
+MDDPVDARLAAAVSHDPRATLAQLSERVGLSTSAVQARLRRLESTGVITGYRALLDPEAV
+GRPLSAFIEISPLDPRQPDDAPELLESIAAIEACHSVAGDAAYMLFVRVGSPRELEALVT
+EIRQTASVSTRTTVVLQTFYEHRPMLELP-AED
+>TT9_LFPAFLNI_00047
+MDDPVDARLAAAVSHDPRATLAQLSERVGLSTSAVQARLRRLESTGVITGYRALLDPEAV
+GRPLSAFIEISPLDPRQPDDAPELLESIAAIEACHSVAGDAAYMLFVRVGSPRELEALVT
+EIRQTASVSTRTTVVLQTFYEHRPMLELP-VED
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001801.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001801.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e882874aa3fce5da5d1b961c9f85f3602b1d334c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001801.fa
@@ -0,0 +1,13 @@
+>AS2_ACLBLIBL_00404
+MTESARTPLPGATNGCSCCAPAADATAPAGHQSADPTGTSAGDATYQVEGMTCGHCVGSV
+AEAVSALDGVDDVRIELVAGGASPVTVTGPASADSVRTAIEAAGYRVRI
+>KBS0714_MOLHKGIG_00632
+MTESARTPLPGATNGCSCCAPAADATAPAGHQSADPTGTSAGDATYQVEGMTCGHCVGSV
+AEAVSALDGVDDVRVELVAGGASPVTVTGPASADSVRTAIEAAGYRVRI
+>KD337_NAFOICDF_02197
+MTESARTPLPGATNGCSCCAPAADATAPAGHQSADPTGTSAGDATYQVEGMTCGHCVGSV
+AEAVSALDGVDDVRIELVAGGASPVTVTGPASADSVRTAIEAAGYRVRI
+>TT9_LFPAFLNI_00599
+MTESARTPLPGATNGCSCCAPAADATAPAGHQSADPTGTSAGDATYQVEGMTCGHCVGSV
+AEAVSALDGVDDVRVELVAGGASPVTVTGPASADSVRTAIEAAGYRVRI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001802.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001802.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b44de1241c23945bd010f30759eae169815bdf8c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001802.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_00407
+MQDKIKVAVNGYGVIGKRVADAVRAQEDMALVGVSDVIADYRIATAAGKGIPVYASTEQA
+LPVMADAGLPVVGGLHDLLENVDVVVDCTPAQVGAGNLELYRAHGVKSVFQGGEKHDLTG
+HSFVAHANYATALGRDSTRVVSCNTTATVRALTALKDVGLLSKARGVLIRRATDPWESDH
+SGIMNTIVPEGRIPSHQGPDAQSVVPDLDVVTMAAKGAHTQNHLHYWTIELTRPAEKQEV
+LEAFRAMPRIAFVRRSDGVVAVNSTVELMEDLGRPRGDMYEVALWEDILTVDGNELYYTY
+TVDNQAIVVPENIDAIRALTGTVDDGGESIRRTDRALGVRQDFVRSSVAAR
+>KBS0714_MOLHKGIG_00635
+MQDKIKVAVNGYGVIGKRVADAVRAQEDMALVGVSDVIADYRIATAAGKGIPVYASTEQA
+LPVMADAGLPVVGGLHDLLENVDVVVDCTPAQVGAGNLELYRAHGVKSVFQGGEKHDLTG
+HSFVAHANYATALGRDSTRVVSCNTTATVRALTALKDVGLLSKARGVLIRRATDPWESDH
+SGIMNTIVPEGRIPSHQGPDAQSVVPDLDVVTMAAKGAHTQNHLHYWTIELTRPAEKQEV
+LETFRAMPRIAFVRRSDGVVAVNSTVELMEDLGRPRGDMYEVALWEDILTVDGNELYYTY
+TVDNQAIVIPENIDAIRALTGTVDDGGESIRCTDRALGVRQDFVRSSVAAR
+>KD337_NAFOICDF_02194
+MQDKIKVAVNGYGVIGKRVADAVRAQEDMALVGVSDVIADYRIATAAGKGIPVYASTEQA
+LPVMADAGLPVVGGLHDLLENVDVVVDCTPAQVGAGNLELYRAHGVKSVFQGGEKHDLTG
+HSFVAHANYATALGRDSTRVVSCNTTATVRALTALKDVGLLSKARGVLIRRATDPWESDH
+SGIMNTIVPEGRIPSHQGPDAQSVVPDLDVVTMAAKGAHTQNHLHNWTIELTRPAEKQEV
+LEAFRAMPRIAFVRRSDGVVAVNSTVELMEDLGRPRGDMYEVVLWEDILTVDGNELYYTY
+TVDNQAIVVPENIDAIRALTGTVDDGGESIRRTDRALGVRQDFVRSSVAAR
+>TT9_LFPAFLNI_00596
+MQDKIKVAVNGYGVIGKRVADAVRAQEDMALVGVSDVIADYRIATAAGKGIPVYASTEQA
+LPVMADAGLPVVGGLHDLLENVDVVVDCTPAQVGAGNLELYRAHGVKSVFQGGEKHDLTG
+HSFVAHANYATALGRDSTRVVSCNTTATVRALTALKDVGLLSKARGVLIRRATDPWESDH
+SGIMNTIVPEGRIPSHQGPDAQSVVPDLDVVTMAAKGAHTQNHLHYWTIELIRPAEKQEV
+LEAFRAMPRIAFVRRSDGVVAVNSTVELMEDLGRPRGDMYEVALWEDILTVDGNELYYTY
+TVDNQAIVVPENIDAIRALTGTVDDGGESIRRTDRALGVRQDFVRSSVAAR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001805.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001805.fa
new file mode 100644
index 0000000000000000000000000000000000000000..052f903e3c80c51e6ab2012465c80213577a50f5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001805.fa
@@ -0,0 +1,60 @@
+>AS2_ACLBLIBL_00460
+M------------------------------------------------------------PAPS---------------
+-----------------------------------LGEEDKRAI------------------------------------
+--------------------------------------------------------------------------------
+--------------PALQPSLSSSNVTAHEHTGHLQAACIDVVARSEVVEVG----------------------------
+--------GPGLMGVNGLPGTGKTTMLRDILASNVVERARRLSACENPFDALTERTHEWTGEGRMRRRARELRPEVVGFE
+MVVASANNAAVENLSEEIPQ---RSAIKDGRHVDADYFACLATAAVG---GSGGGRGRPG--------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----------------------------------------------------------------------
+>KBS0714_MOLHKGIG_02272
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------MGVNGLPGTGKTTTLRDILASNVVERARRLSACENPFDALTERTHEWTGEGRMRRRARELRPEVAGFE
+MVVASANNAAGESISEEIPQVESRIVV-----------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-----------------------------------------------------------------------
+>KD337_NAFOICDF_00410
+MGDTRGRTQQDIVRFWQLQELFDPQPLPKLTPRTSPPFGKRVITWRAEDGDVALPWNRLAPPPPTTKGAAREWRHTLYLR
+IYALEDAYQTLHSAFPADADAYDERPGGRSAAAGALVDADGRLIGGTGVLSSALWGIGRLCRGEGFDDSLVDGFEAAGEA
+FVDAADRAAGVPDDDAFGEQPVLTAGMLVALIRLAQHSAGVEGMPALAGHEVRIASQVVSASSGDETPDIDFLNSFYLSD
+LHRVGEAIARGDVGPALDAYLTPDGDVDTQR-------RVDVVARPDIVDAGVEPARVPAGRWPAKTSYALARSQQFAVN
+RALNELGAEPGLMGVNGPPGTGKTTMLRDILAANVVERARKLAGFADPSGAFTGRTLAWTGEGRRHRTVHELRPELTGFE
+MVVASANNAAVENISEEIPH---RDAIKDSGRADADYFADLATAALGLGVENADEDGAPG-------------ACDGPAA
+EQPAAASSGAWGLVAARLGNKVNRARFRDAVLFGGASGGRGARGRGLDTLLKDWAASPSAPAQWTAAREAFHRALHEVDR
+GLTERRDAAQRTVRTAAAREAVRAAERRLAELSRQRTAKWAGAEAIRRELSAAQAEAGRIRDALDLHRDAKPGFWETITS
+FGVAGQQWRETYQPLLEAWSTADAGRAALAADTEAAERRLSELEAQIVHLDGECARRRGDLADLEAAVRADEERFGGRHP
+SAVVDAQTRETTTPWLDEEMEKARTELFLAALELHRAFIAAAARDLRPSFQAAMEVMAGAAPRDLEAEKRRAAWQVFFLL
+VPLVSTTFASFDRMFTGMGRESLGWLFVDEAGQASPQYAAGAIWRANRAVVVGDPLQLEPVVTIPVTVSRSLAKAHGVSS
+TWIAPEASVQRLADRVSRYGTTLPQGEDDVWVSSPLRVHRRCDDPMFALSNDLAYGGLMVSGVQRKGPEEDPFERTGDGE
+IFASSWMDTPARTPGTHLQPNQIERVRRGIEACRRWGIPCTEIIAISPFREVADALRVLSDEFPGLTAGTIHTAQGREAD
+VVFFVLGGAPDKPGARNWASSRVNLANVAVSRAKRRLYVIGDREAWSRHNYFRQIAEALPRAAEPDAGRER
+>SA211_MHAAABBN_01964
+M------------------------------------------------------------PAPS---------------
+-----------------------------------LGEEDKRAI------------------------------------
+--------------------------------------------------------------------------------
+--------------PALQPSLSSSNVTAHEHTGHPQAARIDVVARADVVEAG----------------------------
+--------GPGLMGVNGLPGTGKTTTLGDILASNVVERARRLSACENPFDALTERTHEWTGEGRMRRRVRELRPEVVGFE
+MVVASANNAAVENLSEEIPQ---RSAIKDSRNVDADYFAELA-AALG---GSRGEEDALGEDSLTSEQPGTSGLATAPMA
+TAPTPPRS------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------ARRR----------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+---------PTR--------------------------------------------------------------------
+----------------------------------------------------------------------G
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001814.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001814.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a774b559823eda6c0d566a0daf57550e2aeae2c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001814.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00553
+MSPADPSPRLLARPPASPAAVAEAFEAAWNAADADALADLFAEDADFVTVLGVWWTRRRQ
+IRLDHARAFRWMFPESRLEMDEVRVRDLGDVAVVHAPWTMTGPGVGGEVGEATGTVGVRE
+AGGDGSGGGDGERTGVLLLVVRRDEAGAWEVVAAQNTDRSPEPRPRPADEDDLLAEVHPH
+PSAWLHPDD--DGPASRLSARPRLGWAVHEPVPPLPLPNSPSPPLPLPQGELSCRWPV
+>KBS0714_MOLHKGIG_02193
+MSPADPTADVAAG-PAGPAAVAEAFAAAWNAADADALADLFAEDADFVNVVGVWWTRRRQ
+IRVNHALGFRWMFPASRLVLGQVRVRELGDVAVVHAPWTMTG-----------------Q
+TAPDGDEA--GERTGVLLLVVRRTEAGAWEAVAGQNTDSVPEAQTHLAD-DDGLAAVHYH
+PSAWIDPDDDPDGPEA-------------------------------------C----
+>SA211_MHAAABBN_01906
+MSPADPTADVAAR-PTGPAAVAEAFAAAWNAADADALAELFAEDADFVNVVGVWWRRRRQ
+IRVNHALGFRWMFPHSRLELGRVRVRELGDVAVVHAPWTMTG-----------------Q
+TAPDGDEA--GERTGVLLLVVRRTETGAWEAVAGQNTDSVPGAQTHLAD-DEGLAAVHYH
+PSAWFDPDEDPDGPEA-------------------------------------C----
+>TT9_LFPAFLNI_02137
+MPPADPTADVAAR-PAGPAAVAEAFAAAWNAADADALAELFAEDADFVNVVGVWWTRRRQ
+IRVNHALGFRWMFPASRLVLGQVRVRELGDVAVVHAPWTMTG-----------------Q
+TAPDGDEA--GERTGVLLLVVRRTEAGAWEAVAGQNTDSVPEAQTHLAD-DDGLAAVHYH
+PSAWIDPDDDPDGPEA-------------------------------------C----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001817.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001817.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bf7718f1fddbc192d1546efc226649d95be43745
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001817.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_00580
+MSSAPPDPADASSGRGGPRPRRQSSLARRTGAGVVVILLITLTAFALFAGNTTRALTAESASRNTTAAWTRAAEQLASLE
+AGTAFDAEPTAGDPQVPGTLGQPEGTVVALVSPADLEDHQAGTLRGHRVGKAGESVPLDARQSHDIIHAIRGEPIGAPVD
+AAVSGEGYRFKALPMTSPGPWVGADQLLVVGVPTGALTAVSRRGLLMVVLGLSLTVVVTALAVFLWLRRGLAPLGEVAAM
+AERVAGMDLAHTGIDRRQTRMPKRLLQGPDEVVVVAEAMDRFTGAVEDALEERRRQEQQLRSFIADASHELRTPLASVRG
+YAEMIAMTEDLSETGRRSLDRVLHQAGRMSALVDDMLLLERLESVSRGRAVGLAPSGEVPAADPVDLPEVLLEAVVDARA
+AWPDHQWVLDLPETLGEEGQGCVTGDPAQLARLVGNLLSNGAKHTPAGTTVTTSLRIGRPLPHQVVVSVHDDGGGIPAEH
+RERLFERFARG---ASAGGPGREPSTGLGLAIVRSIARSHGGEASVASEAGWTRFDVVLPCARWTARAQAEAAGRGGPEA
+PE---GTG-APRE
+>KBS0714_MOLHKGIG_02172
+MSSGLPETAAVPSGHGSTRRRRPTSLARRIGAGVLLILMATILAYSFYAAGITKALLTESASRDASEAWIRASEQLTAPS
+PGGGGDGGPGQGDLRVPGTLGQPEGTVVALVPLSGLEEHQQDALIGHRVGDAGESVPLTAREAHDLLHALRDRPGGPMLD
+AVVGDVSYRVQAQTLTAPGPWVAADQVLVVGAPTGAMSDVTRQALLAVAVGLSVTVLTTAILVTLWLRRGLAPLREVAAV
+AERVAQVDMARAGLDPEDSRMPPRLLQGPDEVAVVAQALDRFTGSVEAALEQRRVQEQQMRRFMADASHELRTPLASVRG
+YAEMIAMTEELSATGRRSLDRVLFQADRMAALVDDMLLLERLESVSRGRAMGLEPSEEVALAERVDLSEVVLEGVMDARA
+AWPDHTWVVDLPEGVEPGTQRSVTGDRSQLARVVGNLLSNAAKHTPVGTTVTASVRQDQPRPGFMLVSVHDDGGGIPADR
+HATLFHRFVRGPGKGRTGPPGTEPSTGLGLAIVRSIARSHGGDVTVASEGGWTRFDVVVPC----------TPGRAGPGA
+AGSCCGSARAGRP
+>SA211_MHAAABBN_01886
+MSSGLPETAAVPSGHGSTRRRRPTSLARRIGAGVLLILMATILAYSFYAAGITKALLTESASRDASEAWIRASEQLTAPS
+PGGGGDGGPGQGDLRVPGTLGQPEGTVVALVPLSGLEEHQQDALIGHRVGDAGESVPLTAREAHDLLHALRDRPGGPMLD
+AVVGDVSYRVQAQTLTAPGPWVAADQVLVVGAPTGAMSDVTRQALLAVAVGLSVTVLTTAILVTLWLRRGLAPLREVAAV
+AERVAQVDMARAGLDPEDSRMPPRLLQGPDEVAVVAQALERFTGSVEAALEQRRVQEQQMRRFMADASHELRTPLASVRG
+YAEMIAMTEELSAAGRRSLDRVLFQADRMAALVDDMLLLERLESVSRGRAMGLEPSEEVALAERVDLSEVVLEGVMDARA
+AWPDHTWVVDLPEGVEPGTQRSVTGDRSQLARVVGNLLSNAAKHTPVGTTVTASVRQDQPRPGFMLVSVHDDGGGIPADR
+HATLFHRFVRGPGKGRTGPPGTEPSTGLGLAIVRSIARSHGGDVTVASEGGWTRFDVVVPC----------TPGRAGPGA
+AGSCCGSARAGRP
+>TT9_LFPAFLNI_02117
+MSSGLPETAAVPSGHGSTRRTQPTSLARRIGAGVLLILVATILAYSFFAAGITKALLAESASRDASEAWIRASEQLTAPS
+PGGGGDARPGEGYLRAPGTLGQPEGTVVALVPLSGLEAHQQDALTGHRVGDTGESVPLTAQEAHDLLHAVRDRPGGPMLD
+AVVGDVSYRVQAQTLTAPGPWVAADQVLVVGAPTGAMSDVARQALLAVAVGLSVTVLTTAILVTLWLRRGLAPLREVAAV
+AERVAQVDMARAGLDPEDSRMPPRLLQGPDEVAVVAQALERFTGSVEAALEQRRVQEQQMRRFMADASHELRTPLASVRG
+YAEMIAMTEELSAAGRRSLDRVLFQADRMAALVDDMLLLERLESVSRGRAMGLEPSEEVALAERVDLSEVVLEGVMDARA
+AWPDHTWVVDLPEGVEPGTQRSVTGDRSQLARVVGNLLSNAAKHTPVGTTVTASVRQDQPRPGFMLVSVHDDGGGIPADR
+HATLFHRFVRGPGKGRTGPPGTEPSTGLGLAIVRSIARSHGGDVTVASEGGWTRFDVVVPC----------TPGRAGPGA
+AGSCCGSARAGRP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001818.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001818.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e147caf1ac5798a9eb8451ff1970b8f7ff7ccd9c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001818.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00602
+MA---------TVSIGRPDSPVWGPFGAR--------RLSLRIRLIVWISLAVVFGIDVV
+LAFSGTGVTAA-EALPQLAG----------------------------------------
+-------EYLLIGLI-AQHAPLGVIAYAIAFTAGARWWDYEALSIVFAGAALMLGLSAQR
+GLLLLAGGLFAAWFVIAGPVL--GSFSTAAAVAFAVSAALGVAAGLGL--------RWLA
+RRFDSALRLAEERQTQLEQAQRDERHRLALELHDVVGHGLTVIALQAGMLPTVTSPVQRT
+EVEQAIADTARQSLTDLRTMLGVLRGSAPGLGPAE-DAEPPRPVRELVAEYRDRLTAAGF
+DVHVRLEAEAEVPDSLRHTLRRIVQEASTNVLRHAEPGGRVDVEIRHDGCETSVL-VRSP
+L----PARRRQEPAPHSGYGLAGMDERVRILGGRITHGPVDGSWVLDVTLPSQERAAQA
+>KBS0714_MOLHKGIG_02155
+MSTAAPAPARPTTATSRP--PADSPLDSRLPAILRAEPVSRHMRIVLYVIVGLMVLGEIL
+TLVLGPMVAAGLSADPELAAIFEEDGGLTGERREPLLRWVLFLASVLVTLLFGWQPTLAA
+VFVLLGSAFGLAGLVEADHAHLT----PQAFSGG-----------VILGAAMVTRYSHRV
+FVWFALGALIL--LTVAGEALTDGTWADEDSLKGVMVVTLIVALCVAVPAFMIRRSRHRA
+RDREAALRRAEEAAACAAEA---ERQRIAAELHDVVAHGLTVISMQAAMLPTQRDPEKRA
+ASEKAIEQAARQSLVDLRRMLTALRGSSRNAQTAEGDAVVDLPAR--LDEFEARLHAAGF
+AVERSLTELEELPRSLELTVLRVVQESVTNILKHAPRRGTVRLTSELEGADRLVLCIASP
+MDEGEPRRDRVVVAMASGFGLAGMRERVAVFGGTLMAGPLGGCWVVRAELPLR------
+>SA211_MHAAABBN_01868
+MSIAAPAPARTTTATSPP--PAESPLGSRLPAILRTEPVSRHTRIVLYVIVGLMVLGEIL
+TLMLGPTVAAGLSADPELAGILEEDGGLTGEGREPLLRWVLFLASVLVTLLFGWQPTLAA
+VFVLLGCTFGLVGLVEADHAHLT----PQAFSGG-----------VVLGAAMVTRYSHRV
+FVWFALGALIL--LTVAGEVLTDGTWADEDSLKGVMVITLIVALCVAVPAFMIRRSRHRA
+RDREAALRRAEEAAACAAEA---ERQRIAAELHDVVAHGLTVISMQAAMLPTQRDPDKRA
+AAEKAIEEAARQSLVDLRRMLTALRGSSRNAQTAEGDAVVDLPAR--LDEFEAQLHAAGF
+AVERSLTELDELPRSLELTVLRVVQESVTNILKHAPRRGTVRLTSQLEGADRLVLCIASP
+MDEGEPRRDRVVVAMASGFGLAGMRERVAVFGGTLTAGPLGGCWVVRAELPLR------
+>TT9_LFPAFLNI_02098
+MSIAAPAPARTTTATSPP--PAESPLGSRLPAILRTEPVSRHTRIVLYVIVGLMVLGEIL
+TLVLGPTVAAGLSADPELAALLEEDGGLTGEGREPLLRWVLFLAGVLVTLLFGWQPTLAA
+VFVLLGSAFGLVGLVEADHAHLT----PQAFSGG-----------VVLGAAMVTRYSHRV
+FVWFALGALIL--LTVAGEVLTDGSWADEDSLKGVMVITLIVALCVAVPAFMIRRSRHRA
+RDREAALRRAEEAAACAAEA---ERQRIAAELHDVVAHGLTVISMQAAMLPTQKDPEKRA
+AAEKAIEQAARQSLVDLRRMLTALRGSSRNAQTAEGDAVVDLPAR--LDEFEARLHAAGF
+AVERSLTELDELPRSLELTVLRVVQESVTNILKHAPRRGTVRLTSQLEGADRLVLCIASP
+MDEGEPRRDRVVVAMASGFGLAGMRERVAVFGGTLTAGPLDGCWVVRAELPLR------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001820.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001820.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2dc56a4e124330e3b2d3d283307a33893571fe92
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001820.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00615
+MTAMTLTPVSPEEL-LERTEAGTAFVIDVRTPAEFAVEHIAGSYNVPLDTLKEHVRDVAE
+RLHGDVVLVCASGARASDAQQRLTGAGFTEAAVLSGGIGSYAQAGGDVVRRGTGWGMERQ
+VRMTAGSLVLAGVIASQIGSKRLALLAGGVGGGLVYSALSNTCAMVSVLDRMPWNRQDRE
+RPASEVLGALPAGAARKA--
+>KD337_NAFOICDF_00539
+-MTVNVTPITPADLQRELAQHPDTVVIDVRTPGEFEAQHIAGSYNVPLDLIQEHAAEVAA
+RLDGKAVLVCQSGSRAGTALDRLAEAGFTQARVLRGGIGAYAQAGGRVSGTGSRWSMERQ
+VRMTAGSLALAGAVASQLGPKRFGLVPAAIGAGLSWSAVSNTCAMASVLSTMPWNRPTEQ
+RSADQVLGALPGADADGARG
+>SA211_MHAAABBN_01859
+-MSVTLSPVAPRDLKAELAARPDAVVLDVRTPGEFETEHIAGSYNVPLDLLQEHADEVAA
+RLDGTAVLVCQSGSRAGTAQDRLAQAGFTSARVLQGGISAYAEAGGEVVRSGNRWSMDRQ
+VRMTAGSIALVGAVASQVGSKRFGLIPAAIGAGLSFSAVSNTCAMASVLAKMPWNRPAQE
+RSAGDVIGRIPTGAGKRS--
+>TT9_LFPAFLNI_02089
+-MSVTLSPVAPRDLKAELAARPDAVVLDVRTPGEFETEHIAGSYNVPLDLLQEHADEVAA
+RLDGTAVLVCQSGSRAGTAQDRLAQAGFTSARVLQGGISAYAEAGGEVVRSGNRWSMDRQ
+VRMTAGSIALVGAVASQVGSKRFGLIPAAIGAGLSFSAVSNTCAMASVLAKMPWNRPAQE
+RSAGDVIGRIPTGAGKRS--
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001823.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001823.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9e2b51d71d568f54973383f03ab91edff4dac831
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001823.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00664
+M-PREAHGPVSAAGLAREAAILAGAGAAILLQVAHRPVAAGVAAHSRFTEDPMRRLRHTL
+GYIYAVTLPEAAGARDAVVARVRAAHAPVRGADHEGRPYNAADADAQLWVAATLYWAGEQ
+VRRRLWGALDPADADRLYRGFAPLATSLEVPAAAWPADRAAFAAYWDARIAGLEVTDDAR
+AVAADLFSGRGVPAPLRAALPLARFVTAGLLPARARAGLGWDWSRRDSIREARLWVLTRT
+LYRPLPAAVRGVVVRGILRGLRRMSEAGGPAS------------------
+>KBS0714_MOLHKGIG_02116
+MRPDRHSAPTSAAALAREAAILAGAGAAILLQVAHRPVGAGVAGHSRFTEDPMRRLRHTL
+AYIYAVTLPEAAPARDAVVDRVRAAHGSVRGVDAGGRPYDAADPDAQLWVAATLYAMGEQ
+VRRRMWGALDAEDADRLYRGYAPLATSLEVPASAWPVDRAAFADYWDDRVARLEVTDDAR
+RVAADLFSGQGVPAPLRAAMPLARFVTAGLLPGRVRAGLGWSWTGRDSVREARLWGLART
+LYRPLPATVRGVVVRWVLRGLPRTRKPRGAVDVEATRREVRPVWENGADV
+>SA211_MHAAABBN_01824
+MRPDRHSAPTSAAALAREAVILAGAGAAILLQVAHRPVGAGVAVHSRFTEDPMRRLRHTL
+AYIYAVTLPEAAPLRDAVVDRVRAAHRPVRGLDAGGHPYDAADPDAQLWVAATLYAMGEQ
+VRRRMWGALDAEDADRLYRGYAPLATSLEVPASAWPVDRAAFADYWDDRVARLEVTDDAR
+RVAADLFSGQGVPAPLRAAMPLARFVTAGLLPGRVRAGLGWSWTGRDSVREARLWGLART
+LYRPLPATVRGVVVRWVLRGLPRMPELGDAVAVRATRRDVRSVWENGGDV
+>TT9_LFPAFLNI_02054
+MRPDRRSAPTSAAALAREAVILAGAGAAILLQVAHRPVGAGVAVHSRFTEDPMRRLRHTL
+AYIYAVTLPEAASLRDAVVDRVRAAHRPVRGVDAGGHPYDAADPDAQLWVAATLYAMGEQ
+VRRRMWGALDAEDADRLYRGYAPLATSLEVPASAWPVDRAAFADYWDDRVARLEVTDDAR
+RVAADLFSGHGVPAPLRAAMPLARFVTAGLLPGRVRAGLGWSWTGRDSVREARLWGLART
+LYRPLPATVRGVVVRWVLRGLPRTRKPRGAVDVEATRREVRPVWENGADV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001827.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001827.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8c3ad21fb6e4977c05948a7327bfa9fc797fc32f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001827.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00682
+MDPQPRLAPGTHHDVAALAPASPVADAAPEDQAAPGDPASPVAPAFAPSARSQVPPFTVM
+TILGRVAELRAAGRDVISLCAGEPGGGAPPTVSAAAAEVHASGSPLTYTPALGLPELRAA
+VAGHYRRWYGIDVRPEQVAITTGSSGAFMLGFLAAFSPGDRVVLPRPGYPAYRNILAALG
+CEVVEVGVDASTRYQPTVAHLEAALAEGPVAGLVLASPSNPTGTMVDADELAALASWCEA
+HGVRLVSDEIYHGIVHPRSGDDDGGPAGGGAAGGAPGASGAEGSRFPHESVGACAWATSR
+TAMVISSFSKYWGMPGWRLGWMLMPEDLAGAIDGLAGSVALCPPAAAQRAAVEAFGEDAY
+AFCEEQAGGFTATRGVVLAALPRLGWADAAPADGAFYLWARLGERQLAEFGDAVAYCTAL
+LEEAGVALTPGADFDGVHGGEFVRMSYAADAGAVAEALERIAAWHAARGLA
+>KBS0714_MOLHKGIG_02097
+MH-------------------RPSRSSTAAPAFAPSAPAPTAAPAFAPSVRSQVPPFTVM
+SILGRVAALRAAGHDVVSLCAGEPGGGAPPAVDAAAAAVHASGRALTYTPALGLPELRAA
+VAGHYRRWYGLDVRPEQVAITTGSSGAFMLGFLAAFSPGDRVLLPRPGYPAYRNILTALG
+VEVVDVDVDAGTRYQPTVAHLEAALAEGPVAGLVLASPANPTGTMVSAAELAELARWCEE
+RGVRLVSDEIYHGIVH-----TDG------------------------QGPGACAWRTSR
+TALVVSSFSKYWGMPGWRLGWMLMPDDLATAVDGLAGSVALCPPAAAQEAAVHAFTEESY
+AFCAEQAGGFTATRGVVLAALPRLAWADAAPADGAFYLWARLASGMLAEFGSAVGYCAAL
+LEEAGVALTPGDDFDAVHGPESVRLSFAAGPDAVHEALERIAAWHAARGLA
+>SA211_MHAAABBN_01804
+MR-------------------RPSRSSTADPA-STAAPAPTATPAFAPSARSQVPPFTVM
+SILGRVAELRAAGHDVVSLCAGEPGGGAPPAVDAAAAAVHASGRAFTYTPALGLPELRTA
+VAGHYRRWYGLDVRPEQVAITTGSSGAFMLGFLAAFPPGDRVLLPRPGYPAYRNILTALG
+VEVVDVDVDAGTRYQPTVAHLEAALAEGPVAGLVLASPANPTGTMVSADELAELARWCEE
+RGVRLVSDEIYHGIVH-----TDG------------------------EGLGACAWRTSR
+TALVVSSFSKYWGMPGWRLGWMLMPDDLAAAVDGLAGSVALCPPAAAQEAAVHAFSEESY
+AFCAEQAGGFTATRGVVLAALPRLGWADAAPADGAFYLWARLAPGMLAEFGSAVGYCAAL
+LEEAGVALTPGDDFDAVHGPESVRLSFAAGPDAVHEALERIAAWHAARGLA
+>TT9_LFPAFLNI_02037
+MR-------------------RPSRSSTADPA-STAAPAPTATPAFAPSARSQVPPFTVM
+SILGRVAELRAAGHDVVSLCAGEPGGGAPPAVDAAAAAVHASGRAFTYTPALGLPELRTA
+VAGHYRRWYGLDVRPEQVAITTGSSGAFMLGFLAAFPPGDRVLLPRPGYPAYRNILTALG
+VEVVDVDVDAGTRYQPTVAHLEAALAEGPVAGLVLASPANPTGTMVSADELAELARWCEE
+RGVRLVSDEIYHGIVH-----TDG------------------------EGLGACAWRTSR
+TALVVSSFSKYWGMPGWRLGWMLMPDDLAAAVDGLAGSVALCPPAAAQEAAVHAFSEESY
+AFCAEQAGGFTATRGVVLAALPRLGWADAAPADGAFYLWARLAPGMLAEFGSAVGYCAAL
+LEEAGVALTPGDDFDAVHGPESVRLSFAAGPDAVHEALERIAAWHAGRGLA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001829.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001829.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a0d425d23b2c5178647c98305d50ddf5021d150
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001829.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00688
+MITHPALQQPVIDAVDIRSVAEFYRELLGLHYRAGDELADGREPDSADWLVLLDDDGRRV
+LTFQRTEELKPSTWPSPEVPMQLHLDFTVPDRDSLDAAHDHALRLGGRLVQDRSDDEDEP
+LYVFADPAGHPFCVFVG
+>KBS0714_MOLHKGIG_02090
+MVTRPVLQQPVVDAVDIRSVAEFYRELLGLHYRTGDELADGREPDSADWLVLLDDDGRRV
+LTFQRTEELKPSTWPSPEVPMQLHLDFTVPDRESLDAAHDHALRLGGRLVLDRSDDEDEP
+LYVFADPAGHPFCVFVG
+>KD337_NAFOICDF_00604
+MVSRPVLQQPVIDAVDIRSVADFYRELLGLHYRTGDELADGREPDSADWLVLLDDDGRRV
+LTFQRTEELKPSTWPSPEVPMQLHLDFTVPDRDSLDAAHDHALRLGGRLVLDRSDDEEEP
+LYVFADPAGHPFCVFVG
+>SA211_MHAAABBN_01798
+MVTRPVLQQPVIDAVDIRSVAEFYRELLGLHYRAGDELADGREPDSADWLVLLDDDGRRV
+LTFQRTDELKPSTWPSPEVPMQLHLDFTVPDRDSLDAAHDHALRLGGRLVQDRSDDEDEP
+LYVFADPAGHPFCVFVG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001831.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001831.fa
new file mode 100644
index 0000000000000000000000000000000000000000..da997fc9b1e927cf2996beb0310d6afd2d0c1d73
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001831.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00702
+MARFSAVLDACVLVPIAQADTLLHLAEAGLYRPVWSGRILDETVRTLEAMHPDMRASGAA
+RHRAGVMDAAFDDARVEGWEQLVPGIDLPDPDDRHVVAAAIQGRADLIVTANLKDFPREV
+VGSFDIEVQSPDEFFMNQLDLDPARVMTALAAQASATRNPPLTVRDVLERLVPCGAPLFA
+EAARAQLWRVDVERP
+>KD337_NAFOICDF_00612
+MARFSAVLDACVLVPIAQADTLLHLAEAGLYRPVWSGRILDETVRTLETMHPDMRASGAA
+RHRAEVMDAAFDDARVEGWEQLVLGIDLPDPDDRHVVAAAIQGRADLIVTANLKDFPREV
+VESFDIEVQSPDEFFMNQLDLDPARVMTALAAQAGATRNPPLTVSDVLERLVPCGAPLFA
+EAARAQLWRVDAERP
+>SA211_MHAAABBN_01786
+MARFSAVLDACVLVPIAQADTLLHLAEAGLYRPVWSGRILDETVRALEAMHPDMRASGAA
+RHRAGVMDAAFDDARVEGWEQLVPGIDLPDPDDRHVVAAAIQGRADLIVTANLKDFPREV
+VESFDIEVQSPDEFFMNQLDLDPARVMTALAAQAGATRNPPLTVRDVLERLVPCGAPLFA
+EAARAQLWRVDVERP
+>TT9_LFPAFLNI_02020
+MARFSAVLDACVLVPIAQADTLLHLAEAGLYRPVWSGRILDETVRALEAMHPDMRASGAA
+RHRAGVMDAAFDDARVEGWEQLVPGIDLPDPDDRHVVAAAIQGRADLIVTANLKDFPREV
+VESFDIEVQSPDEFFMNQLDLDPARVMTALAAQAGATRNPPLTVRDVLERLVPCGAPLFA
+EAARAQLWRVDVERP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001834.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001834.fa
new file mode 100644
index 0000000000000000000000000000000000000000..39c0134615ba90ae58be549ee69cab5aafd1fdb5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001834.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_00734
+MASKDWARKISDAPEGARRQWRADRALRAPMRSPGRPQPSREVQRQFWRVIATGVTTVEA
+SLSVGVSWPVGARWFRHAGGMTPLPLAEPTGRYLSFAEREEIAILHAQGHGVRQIGRALG
+RDPGTISRELRRNCATRSGGKEYRATVAQWKAQQAARRPKPAKLATNQRLHDYVQARLNG
+VVLGPDGVAVQGPVGPGFKGRKMKPRRADRRWSTAWSPEQISHRLRLEFPDDVSMRISHE
+AIYQSLFVEGRGALKRELVGCLRTGRALREPRARTRNKPQGHVTEDVVFSKRPPEAADRA
+VPGHWEGDLIIGLQRSAIGTLAERKSRATILVHLPRLQGWGEQPPVKNGPSLGGYGAAAM
+SAALTKAMTGLPQQLRQTLTWDRGGELAGHAQFTMATGTRVFFADPHSPWQRPTNENMNG
+LLRQYFPKGTDLSRWSADDLAAVAYTLNNRPRKVLGWKTPAEVFAEQLSSLETSGVATTT
+>AS2_ACLBLIBL_00746
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------MRISHE
+AIYQSLFVEGRGALKRELVGCLRTGRALREPRARTRNKPQGHVTEDVVFSKRPPEAADRA
+VPGHWEGDLIIGLQRSAIGTLAERKSRATILVHLPRLQGWGEQPPVKNGPSLGGYGAAAM
+SAALTKAMTGLPQQLRQTLTWDRGGELAGHAQFTMATGTRVFFADPHSPWQRPTNENMNG
+LLRQYFPKGTDLSRWSADDLAAVAYTLNNRPRKVLGWKTPAEVFAEQLSSLETSGVATTT
+>AS2_ACLBLIBL_00749
+MASKDWARKISDAPEGARRQWRADRALRAPMRSPGRPQPSREVQRQFWRVIATGVTTVEA
+SLSVGVSWPVGARWFRHAGGMTPLPLAEPTGRYLSFAEREEIAILHAQGHGVRQIGRALG
+RDPGTISRELRRNCATRSGGKEYRATVAQWKAQQAARRPKPAKLATNQRLHDYVQARLNG
+VVLGPDGVAVQGPVGPGFKGRKMKPRRAEVK-----------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------------------------SLE------VV
+>KBS0714_MOLHKGIG_00625
+MASKDWARKISDVPEGTRRQWRADRALRAPMRSPGRPQPSREVQRQFWRVIATGVTTVEA
+SLTVGVSWPVGARWFRHAGGMTPLSLAEPTGRYLSFAEREEIAILHAQGQGVRQIARTLG
+RDPGTISRELRRNCATRSGKQEYRATVAQWKAQEAARRPKPAKLATNQRLHDYVQARLNG
+VVLGPDGVAVPGPVGPGFKGRKMKPRRADRRWSTAWSPEQISHRLRLEFPDDVSMRISHE
+AIYQSLFIQGRGALKRELVACLRTGRALREPRARTRNKPQGHVTEDVVFSKRPPEAADRA
+VPGHWEGDLIIGTERSAIGTLAERKSRATILVHLPRLEGWGERPPVKNGPSLGGYGAEAM
+TAALIKAMATVPEQLRQSLTWDRGKELAGHVQFTMATGTKVFFADPHSPWQRPTNENTNG
+VLRQYFPKGTDLSRWSAEDLAAVAYTLNNRPRKVLDWKTPAEVFAEQLRSLSTHGVATTG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001840.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001840.fa
new file mode 100644
index 0000000000000000000000000000000000000000..07ab8867c41da99a0d2c41bcb6fbae01924d7bc4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001840.fa
@@ -0,0 +1,32 @@
+>AS2_ACLBLIBL_00817
+MTAEPLTTDAPDDGTPAHES---DVLVIGAGSAGCVLARRLL-DAGRTVTLVEAGDQDVNPD-IDDVSRLGFLWESEVDW
+NYRTTPQPGLAGRSLHLPRGKVMGGSHALNATIWVRGDAWDYDTWAAEHGCTGWSWQDVLPYFKAIENTALGEDAVRGRD
+GLLDISTDYPHHPIQQAMYDATVQEGVPENPDYNSGD--VEGVGWMQLNVR-DGKRFNTWRAYLKPVADHEGLTLVTGAQ
+ARRLLLDGT-RVTGAEF--DRDGETLTITAD-EVVLCAGALGSPEILLRSGVGPADHLREVGVDVAHDLPGVGRNLHDHL
+LVPVVGVTEKEAPAPEVAVAQVHYFAKSDPALPVADTQPIFFSVPMYTNTAGDPMVGPETGFSLLAGIVRPLSRGSLTLS
+GPAPEDPVQVDLGAYTAPE--DLQAMLFSLRQCRRIAAQPALAEGWGATEIHPGPNVGDTDEELIAYIRNTTTTYHHQVG
+TCAMGSGEDAVVD-PATLRVYGLEGLRVADASIMPQVTSGNTNAPSVMIGERAAAMITGVEPF
+>KBS0714_MOLHKGIG_01625
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------------------------------------------------------------------------MRLR
+FNDYRDKPAVDPRYFTDPEGHDMAVAVAGIRLAREIVSQPAMA-AWAGRELAPGEQ-AQTDEEIADYVRRTHNTVYHPVG
+SVRMGADDDAMSPLDARLRVKGVTGLRVADASVMPEHVTVNPNITCVMIGEKAAQLILA-DRA
+>SA211_MHAAABBN_01331
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+----------------------------------------------------------------------------MRLR
+SNDYRDEPVVDPRYFTDPEGHDMAVAVASIRLAREIVSQPAMA-AWAGRELAPGEQ-AQTDEEIADYVKRTHNTVYHPGG
+SVRMGADDDAMSPLDARLRVKGVTGLRVADASVMPEHVTVNPNITCFMIGEKAAQLILA-DRA
+>TT9_LFPAFLNI_01554
+M-----TTTTPDASTPQPDTPVYDYIVVGGGSSGAALAARLSEDPQISVALLEAGPTDVDLDEVLELRRWPELLESGLDW
+DYPIEPQENGNSFMRH-SRAKVLGGCSSHNSCIAFWPPREDLDQWEA-MGATGWGAEHTLPLVKKLENNR-AEGDHRGHD
+GPVELMDVPADDPAGVALLEAAAQAGIPTT-TFNTGETVVKGANWFQINRKQDGTRASSSVSYLHPILDRENLDILTDHW
+VSEVLFDDDRRAYGVRHVADRHGRQAEIHARAEVILSAGAINTPKLLMLSGIGPAEHLAEHGLDVRVDAPGVGSNLQDHP
+EAVISWESKQPMYRDATQYWEIGIFSPTKEGLDRPDLMMHYGSVPFDMHTYRQGYPTADETFCLTPNVTHAKSRGTVRLR
+SNDYRDKPAVDPRYFTDPEGHDMAVAVAGIRLAREIVSQPAMA-AWAGRELAPGEQ-AQTDEEIADYVRRTHNTVYHPVG
+SVRMGAEDDAMSPLDARLRVKGVTGLRVADASVMPEHVTVNPNITCFMIGEKAAQLILA-DRA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001841.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001841.fa
new file mode 100644
index 0000000000000000000000000000000000000000..247962bd70bc1b570ceb52454f5abcb2bcdab4da
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001841.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_00844
+MTDLDALDLS--ADAGLLNPAWAGRPVARATADRAFLQRMLEVEAAWVAVLAAHGLATDE
+QARQAEEACDPAGYDLVALARAAQGGGNPLIPALKALRERLPAGSTAVHMGATSQDVIDT
+ALMAMAAEVGRGLGEDLRGLAAALAGLAREHRGTPMVARSLAQHSLPSTFGLRAANWLDA
+VGQAAQRLERATAALPVQWGGAAGTMASLAGHVDRAHRAGRLDESVTVFTLVEDLAARLG
+L--SAPAGPWDTNRMAVTGVAAALADVTAACGKIANDVLLSSRIENGELGEPLAAGRGGS
+SAMPHKQNPVLSVLVHSAALSAPGMLAQVYTAAGAANDERPDGAWHAEWPALRQLLRVAG
+GAASLTRELAEGLRVNADRMAENLAQTGPVLVSERLMAELAPAIDEACGEPGAGKAAIQG
+AVDDSLAGRGEFRALLREAVPDTVSDDRLDELLDPAGYTGEAGALVDRILAAHAELIDT-
+--
+>KD337_NAFOICDF_00777
+MT----------------------RP----------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------------RVG
+IVGAAPAGPWDTNRMAVTGVAAALADVVAACGKVANDVLTSARIENGELGEPLAAGRGGS
+SAMPHKQNPVLSVLIHSAALSTPGLLAQVYTAAGAANDERPDGSWHAEWPALRQLLCVAG
+GAAALTRELVSGLRVHTGRMAANLALTGPLLVSERIMAELAPELDALFGGPGSGKAVIQG
+AVDASLAGEGDFAELLRAAVPAEVSDARLADLLDPVAYTGEAETLVDRILAAHAPRLRAS
+A-
+>SA211_MHAAABBN_01708
+MTSA-AADLAAVADVGLLDPAWAGSRAEAATADRTFLGHLLDVEAAWVRVLARHGLATEA
+EAAAAAAAGDPDAYDLAALARAAQGGGTPLIPALKALRAQLPAGSRAVHLGATSQDVVDS
+ALMVMVGRVGAILAEDLAAAQDALAELARAHRSTPMVARSLAQHSLPSTFGLRAANWLDG
+LGQAADRLAAAVADLPVQWGGAAGTLASLSGHVDRAHRAGTLGPEVTAFTLVEDLAAELG
+L--AAPAGPWDTNRMAVTGVAAALADVVAACGKIANDVLTSARIENGELGEPLAAGRGGS
+SPMPHKQNPVLSVLIRSAALSAPGLAARVYTAAGAADDERPDGAWHAEWPALRRLLRVAG
+GTAALTRELVSGLRVHEDRMRRNLELTGPLLVSEPIMAELAPELDEASGEPGSGKRLIQD
+VVDRSLACEGNFRALLRAAVPESVPDARLDDLLDPAAYTGEAEALVDRLLAARRGTTTPP
+RT
+>TT9_LFPAFLNI_01936
+------------------------------------------------------------
+-----------------------------------------------MHLGATSQDVVDS
+ALMVMVGRVGAILAEDLAAAQDALAELARAHRSTPMVARSLAQHSLPSTFGLRAANWLDG
+LGQAADRLAAAVADLPVQWGGAAGTLASLSGHVDRAHRAGTLGPEVTAFTLVEDLAAELG
+L--AAPAGPWDTNRMAVTGVAAALADVVAACGKIANDVLTSARIENGELGEPLAAGRGGS
+SAMPHKQNPVLSVLIRSAALSAPGLAARVYTAAGAADDERPDGAWHAEWPALRRLLRVAG
+GTAALTRELVSGLRVHEDRMRRNLELTGPLLVSERIMAELAPELDEASGEPGSGKRLIQD
+VVDRSLACEGNSRALLRAAVPESVPDARLDDLLDPAAYTGEAEALVDRLLAARRGTTTPP
+RT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001842.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001842.fa
new file mode 100644
index 0000000000000000000000000000000000000000..de22d8b24cb507111c002b05b4807717dc1e69fd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001842.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00845
+MAQPTVTTTLLKAAKSPARVLLVGAGLGTGVHALWSLAAQRMAEDTLVIGYDLPGHGASA
+PHADPYTIAELADAVVAAVARLKDEGAIPADVPLAYAGVSLNGCVALQLALEHADVVSGV
+AVVCSAAKIGEAKAWHERAELVEKAGTPTMVAGSAERWFAPGFIERHPERTTDLLHTLQE
+ADRHSYARLCEALAGFDVRERLGEIRVPVLTVHGAHDAVTPPAAGEEIAAAVPGTTVVAL
+DDAAHQAPLEQPVATAEALAAFLTTVQEAAK
+>KD337_NAFOICDF_00778
+MTTPEVAVTLLKPAEAPTRVLVAGAGLGTGVEALWSLAARELPADTLVVGWDLPGHGASA
+PHDAPLTVADLADAVAAAVGRLRAEGTIPADVPVHYAGVSLNGCVALQLALDHADTFASA
+TVICSAAKIGEKDAWLERAELVESAGTPTQVEGSSKRWFAEVFIAEHPERATGLLHTLQQ
+ADRHSYARLCEALAEFDVRGRLGEDTVPLMTIHGVEDQVTAPAAGEEIAAAVPGTVVHAF
+EHTAHQAPLEQPERTAEALAAFL------AR
+>SA211_MHAAABBN_01707
+MSTPRVTTTLLKPAQDPARVLVVGAGLGTGVQALWSLAAQQLPEDTVVVGYDLPGHGASE
+PHAEPFSMAELADAVVAAVQALQEDGTVPADLPVHFAGVSLNGCVALQLALDHADTVSGV
+AVICSAAKIGEAGSWRERAELVERAGTPTLVEGSAQRWFADGFIAAHPERTTGLLHTLQE
+ADRHSYARLCEALADFDVRGRLGEIAVPVLTIHGVADQVTPPSAGEEIAAAVPGTVTHVF
+DETAHQAPLEQPERTAAALAAFP------AR
+>TT9_LFPAFLNI_01935
+MSTPRVTTTLLKPAQDPARVLVVGAGLGTGVQALWSLAAQQLPEDTVVVGYDLPGHGASE
+PHAEPFSMAELADAVVAAVQALQEDGTVPADLPVHFAGVSLNGCVALQLALDHADTVSGV
+AVICSAAKIGEAGSWRERAELVERAGTPTLVEGSAQRWFADGFIAAHPERTTGLLHTLQE
+ADRHSYARLCEALADFDVRGRLGEIAVPVLTIHGVADQVTPPSAGEEIAAAVPGTVTHVF
+DETAHQAPLEQPERTAAALAAFP------AR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001843.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001843.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c7cd59122fea20f149134e6a8b8da06a54b3074f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001843.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00846
+MSGGRTEHAGGADAGQTPLGHQMERTSQEILDAGMAVRREVLGDAHVDRAEATKDATTDD
+FQNLISRYAWGTIWTRPGLDRRMRSAVTITAMVSGGYWEECAMHLRAALRNGLSRDEIKE
+ILLQAAIYSSVPAANVAFKLAQEVFAQVDEDLAAGRPL
+>KD337_NAFOICDF_00779
+M-------------GEQPIGHDMDRTSREVHDAGMAVRREALEDAHVDRAEANKDAATED
+FQNLITRYAWGTVWTRPGLDRRMRSAVTITAMVAGGYWDECAMHLRAALRNGLSREEVQE
+ILLQTAVYCSVPAANIAFTLAQRVFAEVDADLAAGRPL
+>SA211_MHAAABBN_01706
+M------------SAEQPIGHDMDRTSQEVLDAGMAVRREVLGDAHVDRAEARKDATTED
+FQNLITRYAWGTIWTRPGLDRRMRSAVTISAMVAGGYWDECAMHPRAALRNGLTREEIQE
+ILLQTAVYASVPAANIAFKLAQE-----DADLAEGRPL
+>TT9_LFPAFLNI_01934
+M------------SAEQPIGHDMDRTSQEVLDAGRAVRREVLGDAHVDRAEARKDATTED
+FQNLITRYAWGTIWTRPGLDRRMRSAVTISAMVAGGYWDECAMHPRAALRNGLTREEIQE
+ILLQTAVYASVPAANIAFKLAQE-----DADLAEGRPL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001846.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001846.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fd33e27478b14c73558187f4ce241ea72f2d0fcd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001846.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00850
+MLEFVDTAAQAVSQVTDGATVLIGGFGNAGQPMELIDALLESGATGLTVVNNNAGQADAG
+LALLIKERRVAKIICSFPRQSDSWHFDEAYRAGEIELELVPQGNLAERLRAGGAGIGGFF
+TPTGYGTQLAEGKEVREIDGRHYVLESPIRGDVALIKAYAADRHGNLVYRKTARNFGPIM
+AAAAEHTVVQVDEVRDEPIDPEHVITPGIYTDVIVRIETESGAKEREEREALAAGKPKPC
+AATKTAAEKAAEGK
+>KD337_NAFOICDF_00787
+MLEFVETAAEAVAQVRDGQTVLIGGFGNAGQPMELIDALLESGATGLTVVNNNAGQADAG
+LALLIKERRVAKIICSFPRQSDSWHFDEAYRAGEIELELVPQGNLAERLRAGGAGIGGFF
+TPTGYGTQLAEGKEVREIDGRHYVLESPIKGDVALIKAYAADRHGNLVYRKTARNFGPVM
+AAAAATTIVQVDEISEEPLNPEHVITPSIYVDTVVRIQTESGVK---EREALAAGKPKPC
+LATETAAGQAAEGK
+>SA211_MHAAABBN_01701
+MLEFVDTAAQAVSRITDGATVLIGGFGNAGQPMELIDALLESGATGLTVVNNNAGQADAG
+LALLIKERRVAKIICSFPRHSDSWHFDEAYRAGEIELELVPQGNLAERLRAGGAGIGGFF
+TPTGYGTQLAEGKEVREIDGTHYVLEAPIRGDVALIKAYAADRHGNLVYRKTARNFGPVM
+AAAAATTIVQVDEVREEPIDPEHVVTPGIYTDTVVRIDTESGEKERAERAALAEGRPKPC
+AATTTAAEPAAEGK
+>TT9_LFPAFLNI_01929
+MLEFVDTAAQAVSRITDGATVLIGGFGNAGQPMELIDALLESGATGLTVVNNNAGQADAG
+LALLIKERRVAKIICSFPRQSDSWHFDEAYRAGEIELELVPQGNLAERLRAGGAGIGGFF
+TPTGYGTQLAEGKEVREIDGTHYVLEAPIRGDVALIKAYAADRHGNLVYRKTARNFGPVM
+AAAAATTIVQVDEVREEPIDPEHVVTPGIYTDTVVRIDTESGEKERAERAALAEGRPKPC
+AATTTAAEPAAEGK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001849.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001849.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7bbecd3b5ccc7cdf85403c21cb552073d17b8f00
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001849.fa
@@ -0,0 +1,32 @@
+>AS2_ACLBLIBL_00854
+M-------AWSDGLRDTLRFWPLVLVAFVHAVASCSLLGLSFQQASEAQEIGRHLQRWEQLGAASLRGFYLAGPG---DL
+EGGGAAPGDSQQEPP--EPDFSAGSRADSADDGRRTAALLALLADPHRTAYTMDPYGDRFGDDLPGALLVTEDFFAGSGL
+DETMSPTGQSSHRDAGGTAAPYAVLGSDSSAKDPYALTAGGVLPPTTRVQFQDAMIPVTGRLAPGATALDPMMGSV-PLD
+EAVLVVVPPSMLASLYPPDALEALLLRTIVLGQDAVPALDAAGRALETDALLVTAEPLTPQSSALLQSLSASSRTLLVLF
+GAAVLGAVVSLFGVLGVLARALAPTWRIAAMVGAARWQAAVRIIVPVLFAWVLPAAVGLTAG---ASALPGPPST-GLTS
+TALIAVMAIGAVATLSSWRALAATFGRRPRR-RPTKETA-----------------------------------------
+----------------------------------------------------------------
+>KD337_NAFOICDF_00791
+MSTRALAVALADGLNDAARFWPLILGAFLHAVVSCLLLGLSFQQVSEAGEVSAHLHRWEQQGAASLHGIYLAGVSARPAA
+EGMTPTLQDGLDETPVLDPEGEAGAAS-------RTAGLLSLLEDPQRLAYTMDPYGDRFGDDLPGAMVVTEDFLRATGV
+DDSMTPTGAAVPRDSDGAPAPYAVLGSASRAKDPHALLVDGAPPPTTRVQFQGAMIPVVGRLAQGATTLDPMMGSV-PLD
+EAALIVLPAASLPGLYPAEELEALLLRTVVLGPDAVPVLDASARPFESERLLVAAQPLTAESSGLLQSLTSSSRTLVLLF
+GSAVLGAVVSLFGALGVLARALAPTWRIAAMVGAARWQAAVRIAVPVLLAWVLPAGLGLLAG---AAAVPGPSPT-ALAA
+VALALVLGVGCWAALSSWRALAATFG--PRRRTPTRTTTKEAA-------------------------------------
+----------------------------------------------------------------
+>SA211_MHAAABBN_01697
+M-------AWSEGLRDTLRFWPLVLVAFVHAVASCSLLGLSFQQASEAQEVDRHLQRWEQLGAASLRGFYLAAPG---HL
+EGGGAAPGESQQEPP--EPDLSADSKAASADDGRRAAALLALLEDPHRTAYTMDPYGDRFGDDLPGALLVTEDFFAGSGL
+AAAMSPTGQSPHRDADGTAAPYAVLGSDSSAKDPYALTVGGVLPPPTRVQFQDAMIPVTGRLAPGATALDPMMGSV-PLD
+GAVLVVVPPSALASLYPPDALEAILLRTIVLGQDAVPALDAAGRALETDALVVNAEPLTPQSSALLQSLSASSRTLLVLF
+GAAVLGAVVSLFGVLGVLARALAPTWRIAAMVGAARWQAAVRIIVPVLFAWVLPAAVGLTAG---ASALPGPPPT-GLTS
+TALIAVMAIGAVATLSSWRALAATFGRRPRRHRPTKETARASSKSTTWTRRSSPAGRRCPSSGGPLCWFRPVRCTPSPGL
+PGPGNPPCCGSSRAWTPRTRVASCSGANLSRSRGAGAGTGIGTSGAASSCRTSPSWSTPPHWRT
+>TT9_LFPAFLNI_00736
+M--MAAMRAVADGLRDLFDTPGLLFLSLLHTTVASVVFGLALGVAGGVTTALEVLEDAESSGLVTARIL-----------
+-----------------DPAVTTDLHPRAVDTVSRAFAAHVDGVDP-RAFLVTDAIGIE-DPRLQGAVIATPGLAREFGA
+AAAVSP--------------------AEGVYFAPAAITSGG---PGGTVYVGSTPHSYAGPL-PGDAAAPRADGSLWPLG
+ESPVIVTSTTTMAGLIEPAQLAA-VYGSVVARQDAASEVRAALDVLEDETGVVAELAPIASARSPIAREARGAALMVTAY
+TAGLASAVVTVVSLLTTVTRRLTPTWLAHLTVGAPRRLIRLRIATSVAAVWGIPAVLGSLLGLGIASEAGGLRPAPAVVV
+VGLAVVLAIAAACTRHPLRQL----------HRAVRTAALVEGT------------------------------------
+---------------------------------------------------------------V
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001851.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001851.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f627aca75ac71923f529ea0ee40630dae7bfe534
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001851.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00870
+MMAWIDGLPLLWSIGFFWMLAILRTLIVFSLGRGLASGVERTRWFARVMEGPVYVRAQRF
+IQRHGVWAIPFCYLTVGIQTAVIGSAGVARMPWRRFLPAAALGTFLWGVVYGTVGMAVVW
+AVIGAALGEGRGVLALVLILAAVAAFVVWRRRRTLRQHGAG
+>KBS0714_MOLHKGIG_01987
+MMAWIDGLPLLWSIGFFWMLAILRTLIVFSLGRGLASGVERTRWFARVMEGPVYVRAQRF
+IQRHGVWAIPFCYLTVGIQTAVIGSAGVARMPWRRFLPAAALGTFLWGVVYGTVGMAVVW
+AVIGAALGEGRGVLALVLILAAVAAFVVWRRRRTLRRHGAG
+>SA211_MHAAABBN_01681
+MMAWIDGLPLLWSIGFFWMLAILRTLIVFSLGRGLASGVERTRWFARVMEGPVYVRAQRF
+IQRHGVWAIPFCYLTVGIQTAVIGSAGVARMPWRRFLPAAALGTFLWGVVYGTVGMAVVW
+AVIGAALGEGRGVLALVLILAAVAAFVVWRRRRTLRRHGAG
+>TT9_LFPAFLNI_01913
+MMAWIDGLPLLWSIGFFWMLAILRTLIVFSLGRGLASGVERTRWFARVMEGPVYVRAQRF
+IQRHGVWAIPFCYLTVGIQTAVIGSAGVARMPWRRFLPAAALGTFLWGVVYGTVGMAVVW
+AVIGAALGEGRGVLALVLILAAVAAFVVWRRRRTLRRHGAG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001853.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001853.fa
new file mode 100644
index 0000000000000000000000000000000000000000..979d560fa8abead7d0cb9e19dd8d509c32398f70
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001853.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_00892
+MSELDELDFVAVEIHTAGTDPASVCAVDMALVRGGEIVAAERWPVRPPTGPTSFSRLHTQ
+LHGVDEAAVADAPEWPEVAAQLDLLGEHLPFVASGADRDRGAYEAATRATGGTPQAHEWR
+DALALVGRLRPDVDPPRIATAAQALGVPDGARPAGAGSEAVRTAEVVLALARQSGRGTVR
+RLWSEAAPPTPDEPIIPESLRRRHATEPSVPPAGAHRWAPPAPAPAPASAAPAGRGGGVG
+WKLAGTAMVGIALGAALFFVASVAVIMEYLEDGRGSDATVGMGIAALSAFLAWWFGKTGV
+DWIRRQDG
+>KBS0714_MOLHKGIG_01967
+MSELDE------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------LDFAALSAFLAWWFGKTGV
+DWIRREDG
+>SA211_MHAAABBN_01661
+MSELDE------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------LDFAALSAFLAWWFGKTGV
+DWIRREDG
+>TT9_LFPAFLNI_01893
+MSELDE------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------LDFAALSAFLAWWFGKTGV
+DWIRREDG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001856.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001856.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3f488836998a3b14d0aa1135944a29accb903e1a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001856.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_00903
+MAHPKTLQVFLMDGVPTGRLKCTLDNWTGLVYVVPRTSLNADGHPEAFEGTGVYLLLGQD
+ADSGDDVVYVGQAVGRANGNGMVGRIREHVRKEAHDFWNRAILLSTLGDTFGPTEVTYLE
+HFFHQAASTTGRFTVDNAVAPSQGNVTEEKKAELEEYADKAKILISALGHRVFESADGSH
+AVVAAGRTTQAPEAVPERTLFTMTVNGVGAQGHPTPDGFVVLRGSGLMEGLRPSAPAGVR
+ASRERFAGHIGADGVLIEDVSFTSSSAAAGFVAGGSMSGPSSWRAPDGRTLGEVEAASAK
+TVPIEDDA
+>KD337_NAFOICDF_00842
+MAHPKTLQVFLMDGVPTGRLKCTLDNWTGLVYVVPRTSLNADGHPEAFEGTGVYLLLGQD
+ADSGDDVVYVGQAVGRANGNGMVGRIREHVRKEAHDFWNRAILLSTLGDTFGPTEVTYLE
+HFFHQAASTTGRFTVDNAVAPSQGNVTEEKKAELEEYADKAKILISALGHRVFESADGSH
+AVVAAGRTTQAPEAVPERTLFTMTVNGVGAQGHPTPDGFVVLRGSGLMEGLRPSAPAGVR
+ASRERFAGHIGADGVLIEDVSFTSSSAAAGFVAGGSMSGPSSWRAPDGRTLGEVEAASAK
+TVPIEDDA
+>SA211_MHAAABBN_01645
+MAHPKTLQVFLMDGAPTGRLKCTLDNWTGLVYVVPRTSLNADGHPEAFEGTGVYLLLGQD
+ADSGDDVVYVGQAVGRANGNGLVGRIREHVRREAHDFWNRAILLSTLGDTFGPTEVTYLE
+HYFHQAATTAGRFTVDNAVAPSQGNVTQEKRAELEEYADKARLLISALGHRVFESADGSH
+AAAAAGRATQAPEAAPKRTLFTMTVNGVRAQGHPTPDGFVVLRGSGLMEGLRPSAPPGVR
+AGRERFADHIGADGVLTEDVSFTSSSAAAGFVAGGSMSGPSSWRAPDGRTLGEVEAASAA
+PEPMEDDA
+>TT9_LFPAFLNI_01875
+MAHPKTLQVFLMDGAPTGRLKCTLDNWTGLVYVVPRTSLNADGHPEAFEGTGVYLLLGQD
+ADSGDDVVYVGQAVGRANGNGLVGRIREHVRREAHDFWNRAILLSTLGDTFGPTEVTYLE
+HYFHQAATTAGRFTVDNAVAPSQGNVTQEKRAELEEYADKAKLLISALGHRVFESADGSH
+AAAAAGRATQAPEAEPKRTLFTMTVNGVRAQGHPTPDGFVVLRGSGLMEGLRPSAPPGVR
+AGRERFADHIGADGVLTEDVSFTSSSAAAGFVAGGSMSGPSSWRAPDGRTLGEVEAASAA
+PEPMEDGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001860.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001860.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b89f243e0e90ddaa0ad07597fd32c110bfb2c438
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001860.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00919
+MGILSGITRALGGSRR---RPTIGANT-----YGR------RRSSGAGGALLGTLGGLAL
+RELSRRSSGGTARGYGGQAGYGRTTGGYGRTSGGLGGLLGGLGGMGAGRSSSRGGGLLGG
+LLSGPMNSR-----SGRRTTGGR------F
+>KBS0714_MOLHKGIG_01940
+MGILSSLTRTLGGGGRRSSRPTIGAHIGRSPGFGRQARSQGRRSSGLGGALLGTLGGLAL
+RELSRRGAGSTTRGRSS----GAYRGGFGPSARSTGGL---------------GTGLLGG
+LLGGALASRGRSGAAGRRTAGGRRTMGGGF
+>SA211_MHAAABBN_01636
+MGILSSLTRTLGGGGRRSSRPTIGAHIGRSPGFGRQARSQRRRSSGLGGALVGTLGGLAL
+RELSRRGAGGTTRGRGS----GAYRGGFGPSARSTGGL---------------GTGLLGG
+LLGGALASRGRSGAAGRRTAGGRRTVGGGF
+>TT9_LFPAFLNI_01859
+MGILSSLTRTLGGGGRRSSRPTIGAHIGRSPGFGRQARSQGRRSSGLGGALLGTLGGLAL
+RELSRRGAGSTTRGRSS----GAYRGGFGPSARSTGGL---------------GTGLLGG
+LLGGALASRGRSGAAGRRTAGGRRTMGGGF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001864.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001864.fa
new file mode 100644
index 0000000000000000000000000000000000000000..eed1bb7327df28073ca1c359e5242015e1b89ed9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001864.fa
@@ -0,0 +1,17 @@
+>AS2_ACLBLIBL_00963
+MTRQSDLKTLIRARMAVTGERYTAAAAALAHEWETAERFHATVLARFFDGERLRSIPALR
+KPRVAVLLELLRRFAPDRAYTEPEVNDLLRPAHEDVATLRRELVDYGFLDRADGVYRMAD
+AGPDVDPRFAADLPVDLERRLRQLRAGR
+>KBS0714_MOLHKGIG_01895
+MTRQSDLKTLIRARMAVTGERYTAAAAALADEWQSAERYHATVLARFFDGDRLRSIPARR
+KPRVAVLLELLRRFRAGRAYAEAEVNDLLRPAHEDVATLRRELVDYGFLARADGVYRLAD
+AGPDLDPRFAADLPVDLERRLREIRAGR
+>SA211_MHAAABBN_01591
+MTRQSDLKTLIRARMAVTGERYTAAAAALADEWQSAERYHATVLARFFDGDRLRSIPARR
+KPRVAVLLELLRRFGAGRAYAEAEVNDLLRPAHEDVATLRRELVDYGFLDRADGVYRLAD
+AGPDLDPRFAADLPVDLERRLREIRAGG
+>TT9_LFPAFLNI_01815
+MTRQSDLKTLIRARMAVTGERYTAAAAALADEWQSAERYHATVLARFFDGDRLRSIPARR
+KPRVAVLLELLRRFRAGRAYAEAEVNDLLRPAHEDVATLRRELVDYGFLARADGVYRLAD
+AGPDLDPRFAADLPVDLERRLREIRAGR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001868.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001868.fa
new file mode 100644
index 0000000000000000000000000000000000000000..554932db2caf388c9e2695f4553877590a6086cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001868.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_00982
+MAAKKNDAAFTVPGLALKDGHRVAEILQGRLHALNDLQLTLKHAHWNVVGPGFIGVHEML
+DPQIETVRAMVDVVAERIATLGVSPEGTPGALVAARTWDDYALGRASTLEHLAALDLVYD
+GVVTDHRAAIETVGELDPVSEDMLIGQVAELELFQWFMRSFLTTVDGDLSHAGATREIVA
+AARVSGAQKAPAPKKGAAKKAPAKKK---
+>KBS0714_MOLHKGIG_01877
+-MAEKNAAEYTVPGLSLSTGRRTAEILQGRLHALNDLQLTLKHAHWNVVGPGFIGVHEML
+DPQIELVRGMVDVVAERIATLGVSPAGTPGALVAARTWDDYTLGRASTLEHLAALDLVYD
+GVVTDHRAAIDATEDLDPVTQDILIDQVAQLELFQWFMRSFLTTDDGRLSSAGTTTEAAA
+AGRVKGAQSAPAPKAGRTKKSDAKKSKKK
+>KD337_NAFOICDF_00920
+--MDSRARASTDPGLSVEDGHHVAEVLPVRLHALNDLQLTLKHAHWNVVGPGVIGVHEMP
+GPQIEKVRAMVDAIAE--------------------------------------------
+------------------------------LELFPRSMRSFPATDDGELSHADALREAEA
+AKQK-------------------------
+>SA211_MHAAABBN_01573
+-MAEKNAAEYTVPGLSLSTGRRTAEILQGRLHALNDLQLTLKHAHWNVVGPGFIGVHEML
+DPQIELVRGMVDVLAERIATLGVSPAGTPGALVAARAWDDYTLGRASTLEHLAALDLVYD
+GVVTDHRAAIDATEDLDPVTQDILIDQVAQLELFQWFMRSFLTTDDGRLSSAGTTTEAAA
+AGRVKGAQSAPAPKAGRTKKSDAKKSKKK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001869.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001869.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ee914c826d21c9530b3d26b563b0eeb294a37515
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001869.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_01022
+MSHETPASDTTPHSGAAPRGFAGAEALELPGWRHVYSGKVRDLYEPADAAPGESETLLVV
+ASDRISAYDHVLSPPIPDKGAVLTQLTLWWFERLSEGYNGAAGAPVEHHVVSTDVPEAVA
+GRAMVVKRLRMFPVECIARGYLTGSGLAEYRESGTVTGLPLPTGLVDGSRLDPAIFTPSA
+KAEVGEHDENITFEQMSERVGAEAAERLRYLTLDLYSRAEAIARDAGIILADTKVEFGVD
+PATGQVVLGDEVLTPDSSRFWDAEDYEPGRAQASFDKQFVRDWLTSDASGWDRASGAEPP
+ELPADVVEKTRARYVEAYERLTGRPFEA
+>KBS0714_MOLHKGIG_01846
+MSGERV-------------GFTGAEALWLPGWRHVYSGKVRDLYEPADAEPGRSATLLVV
+ASDRISAYDHVLEPPIPDKGTILTRLTLWWFEKLAEGYNGAHAEPVEHHVVGTDVPAAVA
+GRAMVVKRLDMFPVECIARGYLTGSGLAEYRASGTVAGLPLPAGLVDGSRVDPPIFTPSA
+KAEVGEHDENITFEQMVERVGTEAAERLRFLTLDLYARAEAIAREAGIILADTKVEFGVD
+PATGQVVLGDEVLTPDSSRFWDAEDYEPGRPQASFDKQFVRDWLTGPDSGWDKTSGEAPP
+ELPADVVAKTRDRYVEAYERLTGRPFDA
+>SA211_MHAAABBN_01542
+MSGERV-------------GFTGAEALWLPGWRHVYSGKVRDLYEPADAEPGRSATLLVV
+ASDRISAYDHVLEPPIPDKGTILTRLTLWWFEKLAEGYNGAHAEPVEHHVVGTDVPAAVA
+GRAMVVKRLDMFPVECIARGYLTGSGLAEYRASGTVAGLPLPAGLVDGSRVDPPIFTPSA
+KAEVGEHDENITFEQMVERVGTEAAERLRFLTLDLYARAEAIAREAGIILADTKVEFGVD
+PATGQVVLGDEVLTPDSSRFWDAEDYEPGRPQASFDKQFVRDWLTGPDSGWDKTSGEAPP
+ALPADVVAKTRDRYVEAYERLTGRPFDA
+>TT9_LFPAFLNI_01766
+MSGERV-------------GFTGAEALELPGWRHVYSGKVRDLYEPADAEPGRSATLLVV
+ASDRISAYDHVLEPPIPDKGTILTRLTLWWFEKLAEGYNGAHAEPVEHHVVGTDVPAAVA
+GRAMVVKRLDMFPVECIARGYLTGSGLAEYRASGTVAGLPLPAGLVDGSRVDPPIFTPSA
+KAEVGEHDENITFEQMVERVGTEAAERLRFLTLDLYARAEAIAREAGIILADTKVEFGVD
+PATGQVVLGDEVLTPDSSRFWDAEDYEPGRAQASFDKQFVRDWLTGPDSGWDKAGGEAPP
+ALPADVVAKTRDRYVEAYERLTGRPFDG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001870.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001870.fa
new file mode 100644
index 0000000000000000000000000000000000000000..90548f756b84a60d88149275d78e392944382b42
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001870.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01032
+MPLSLTWLDAVLLVLLVVLLVQGHRRGLWVVLGNLVGLVGGAAIAFYAMPEVAQLVTAPQ
+WRWAALLATLVLLVAAGQYVGAAIGEAIRLRVNLPALRLVDRILGALAAGVAGALVVWLV
+SFSMSTAGSGAVTREVARSQVIAAIDRVLPDSALAWAARSRSAVADLDMLPELRLPEPVP
+VPDDDGGVRAAPPTSSSPATTPARPAEPEDAAPASGGSATPEERPPA----PPTTAPPPF
+PTPRPRRPPRPPPPRPPRPPIPSPRRPTPPNPPPPRPSRTAVPAEAAVVRLTGTAAQCGQ
+VQSGSGVAVAPDRVLTNAHVVLGVDAPTVTDAQRGVHDARIVHLDTARDLAVLALDGADL
+PVMPLGAELVGGESALVMGHPDGGPFASTPATVQAVGEVPLGDVVTGAASMVDVYTLAAD
+IRHGYSGGPVVDAAGSLAGLVFARAPGADPVGYALSADSIAPAVAAAPGMSATVPSGDCI
+PGA
+>KBS0714_MOLHKGIG_01836
+MPLGLTWLDVLLIVALAMLLVQGHRRGLWVVLGNLVGLVGGAAIAFYALPEVAEFVTAPQ
+WRWAALIATLVLLVAAGQYVGAAIGEAIRLRVNLPALRLVDRLLGALAAGLAGALVLWLV
+AFSIAASGSTAVTREVNRSQVITALDTVMPDSLLAWAARSRSAVADLDVLPELELPAPVP
+ESDD--GVRAAPAPAATPGLPSAASSPSDTATSAPSASATPEEPDDAAAASSSTAAAPSA
+TTTAPASSTSTAAPSTP----------------------AASSASAAVVRLTGTAAQCNQ
+VQSGSGVAVAPDRVLTNAHVVLGVDAPTVTDRARGVHAARIVHLDTAHDLAVLAVDDANL
+PVMPVGAELTGGASASVLGYPDGGPFASTPATVQAVGEVPLGDVLTGAASMVDVYTLAAD
+IRHGYSGGPVVDTAGNLAGLVFARAPGSDAVGYALTADTIAPVVAAAPGMTATVPSGDCV
+PGG
+>SA211_MHAAABBN_01533
+MPLGLTWLDVLLIVALAMLLVQGHRRGLWVVLGNLVGLVGGAAIAFYALPEVAKFVTAPQ
+WRWAALIATLVVLVAAGQYVGAAIGEAIRLRVNLPALRLVDRLLGALATGLAGALVLWLV
+AFSIAASGSTAVTREVTRSRVIAALDTVMPDSLLAWAARSRSAVADLDVLPELELPAPVP
+ETDD--GVRAAPAPAATPGLPSAASSPS--APPATSAAATPEEPDDAAAASSSTSAAPSA
+TTTAPASSTSTAAPSTP----------------------AASSASAAVVRLTGTAAQCNQ
+VQSGSGVAVAPDRVLTNAHVVLGVDAPTVTDRARGVHAARIVHLDTAHDLAVLAVDDADL
+PVMPVGAELTGGASASVLGYPDGGPFASTPATVQAVGEVPLGDVLTGAASMVDVYTLAAD
+IRHGYSGGPVVDAAGNLAGLVFARAPGSDAVGYALTADTIAPVVAAAPGMTATVPSGDCV
+PGG
+>TT9_LFPAFLNI_01757
+MPLGLTWLDVLLIVALAMLLVQGHRRGLWVVLGNLVGLVGGAAIAFYALPEVAKFVTAPQ
+WRWAALIATLVVLVAAGQYVGAAIGEAIRLRVNLPALRLVDRLLGALATGLAGALVLWLV
+AFSIAASGSTAVTREVTRSRVIAALDTVMPDSLLAWAARSRSAVADLDVLPELELPAPVP
+ETDD--GVRAAPAPAATPGLPSAASSPS--APPATSAAATPEEPDDAAAASSSTSAAPSA
+TTTAPASSTSTAAPSTP----------------------AASSASAAVVRLTGTAAQCNQ
+VQSGSGVAVAPDRVLTNAHVVLGVDAPTVTDRARGVHAARIVHLDTAHDLAVLAVDDADL
+PVMPVGAELTGGASASVLGYPDGGPFASTPATVQAVGEVPLGDVLTGAASMVDVYTLAAD
+IRHGYSGGPVVDAAGNLAGLVFARAPGSDAVGYALTADTIAPVVAAAPGMTATVPSGDCV
+PGG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001871.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001871.fa
new file mode 100644
index 0000000000000000000000000000000000000000..00c45dd34f971de8c06e4b3546ca712d82c430ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001871.fa
@@ -0,0 +1,36 @@
+>AS2_ACLBLIBL_01111
+MTPSPSVQESYTRGPSDVPMLEQTLAQNLDDAARRSGARPAVVECGPDGDPATDRSWTYEQLREESVTVAKALMAAGYEP
+GDRIGLWSPNVAEWTSLLYGAARAGVILVNLNPAYRAHELTYVVEQCGMRGLVVAPADAHQDRPDIARDVACGGCPELRQ
+LIILPTAGPITAESYAHAVDGVLDCRPEPTPVSEGTWSAFLAGADRVSDEELAARESAVSPEDPVNLQYTSGTTGFPKGV
+TLTHRNVLNNGFHIGELLGYSQEDTVVIPVPFFHCFGMVIGVIAAVSHGSLCVIPARGFEPVATLRAAAATRATSLYGVP
+AMFIAMLARPEADELDLSTLRTGVMAGSTCPVEVMRRVIDRFHMAEVAICYGMTETAPVSTMTRRDDSLEVRTQTVGRTM
+PHVETKIVDPVSGEVVPRGSTGELCTRGYSVMRGYWNDEEKTAEVLDAEGWMHSGDLASMDEGGSVRIEGRIKDLVIRGG
+ENISPREVEEFLYTHPDVQDVQVVGVPDERYGEQLMACLIMKDGTRPLTPEDVRAFCEGKIAHFKIPAHVRVLDAFPMTV
+SGKVRKVELRAEGAKLVEGGDR----D
+>KBS0714_MOLHKGIG_01766
+MTES-TAPESFTQGPTDVELLEQTLAQNLDDTARRFADRAALLECGPDGDPATGRTWTYGQLREESVTVAKALMAAGYEA
+GDRIGMWSPNVAEWVSLLYGAARAGVILVNLNPAYRAHELTYVVEQCDMRGLVVACADARMDPPATARAVARESAPHLRQ
+LIMLPAGS--GEDAYAHVQAGDVAGRHAADPVAEGTWADFLAEAARVSDEDLAVREAATGPADPVNLQYTSGTTGFPKGV
+TLTHRNVLNNGFHIGELLGYTEEDTVVIPVPFFHCFGMVIGVIATVSHGSLAVIPARSFEPVSALRAVAATGATSLYGVP
+AMFIAMLARPEADALDLSTLRTGVMAGSTCPVEVMKKVIDRFHMSEVAICYGMTETAPVSTMTRRDDSLEVRTQTVGRTM
+PHVETKIVDPATGDVVPRGATGELCTRGYSVMLGYWDAPEKTAEVLDADGWMHSGDLASMDEDGSVRIEGRIKDLVIRGG
+ENISPREVEEFLYTHPDIQDVQVVGVPDEKYGEQLMACVIMKDGVEPLTVDAVREFATGRIAHFKIPAYVRVLDAFPMTV
+SGKVRKVELREEGAKVVQAQAHAQGAG
+>SA211_MHAAABBN_01473
+MTES-TAPESFTQGPTDVELLEQTLAQNLDDTARRFADRAALLECGPDGDPATGRTWTYGQLREESVTVAKALMAAGYEA
+GDRIGMWSPNVAEWVSLLYGAARAGVILVNLNPAYRAHELTYVVEQCDMRGLVVACADARMDPPATARAVARESAPHLRQ
+LIMLPAGS--GEDAYAHVQDGDVAGRHAADPVAEGTWAAFLAGAARVSDEDLAAREAATRPADPVNLQYTSGTTGFPKGV
+TLTHRNVLNNGFHIGELLGYTEEDTVVIPVPFFHCFGMVIGVIATVSHGSLAVIPARSFEPVSALRAVAATGATSLYGVP
+AMFIAMLARPEADALDLSTLRTGVMAGSTCPVEVMKKVIDRFHMSEVAICYGMTETAPVSTMTRRDDSLQVRTQTVGRTM
+PHVETKIVDPATGDVVPRGATGELCTRGYSVMLGYWDAPEKTAEVLDADGWMHSGDLASMDEDGSVRIEGRIKDLVIRGG
+ENISPREVEEFLYTHPDIQDVQVVGVPDEKYGEQLMACVIMKDGVEPLTVDAVREFATGRIAHFKIPAYVRVLDAFPMTV
+SGKVRKVELREEGAKVVQAQAHAQGAG
+>TT9_LFPAFLNI_01695
+MTES-TAPESFTQGPTDVELLEQTLAQNLDDTARRFADRAALLECGPDGDPATGRTWTYGQLREESVTVAKALMAAGYEA
+GDRIGMWSPNVAEWVSLLYGAARAGVILVNLNPAYRAHELTYVVEQCDMRGLVVACADARMDPPATARAVARESAPHLRQ
+LIMLPAGS--GEDAYAHVQDGDVAGRHAADPVAEGTWAAFLAGAARVSDEDLAAREAATRPADPVNLQYTSGTTGFPKGV
+TLTHRNVLNNGFHIGELLGYTEEDTVVIPVPFFHCFGMVIGVIATVSHGSLAVIPARSFEPVSALRAVAATGATSLYGVP
+AMFIAMLARPEADELDLTTLRTGVMAGSTCPVEVMKKVIDRFHMSEVAICYGMTETAPVSTMTRRDDSLEVRTQTVGRTM
+PHVETKIVDPATGEVVPRGATGELCTRGYSVMLGYWDAPEKTAEVLDADGWMHSGDLASMDEDGSVRIEGRIKDLVIRGG
+ENISPREVEEFLYTHPDIQDVQVVGVPDEKYGEQLMACVIMKDGVEPLTVDAVREFATGRIAHFKIPAYVRVLDAFPMTV
+SGKVRKVELREEGAKVVQAQAHAQGAG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001872.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001872.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bbbce449ff37001dd877f6508982385ce31dedc5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001872.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_01195
+MARRALPAAGLAVLAALAAGCSLSDGQPAPSETT-SAPAASSASPSGTATGPAPSSAAPA
+GAHSDPAALDVVVNKARPLSPVDWAPQDLVPVPGSDLPLRAEAARAAGGLIEAAARSGHA
+LSTLSAYRSHAYQAQTYGHWVDELGRQEADRVSARPGHSEHQTGLAWDVGDPESPQCHLE
+ACFGDTAAGRWVAEHAAEHGFVVRYPAGAEHVTGYAPEPWHLRFVGREAAAAVEAAGGVL
+ETAWGLPAAPDYPG
+>KBS0714_MOLHKGIG_01683
+-MRRTLPLAALAALALLVAGCGTPAAGPSSTPTTPTSGSASAAASSGAASSTAPSS----
+GTHADPATLDVVVNKTRPVAPPDWAPSDLVAVPGSELPLRAEAATAAGDLLDAAAAAGHR
+LTTLSAYRSYDYQVRTYGHWVDELGRAEADRVSARPGYSEHQTGLAWDVGDAATPACDLE
+ACFGDTAAGRWVAAHAAEYGFVIRYPVGAEDVTGFAHEPWHLRYVGSAEAARVEAAGGVL
+ETAWGLPPAPDYAD
+>SA211_MHAAABBN_01387
+-MRRTLPLAALAALALLAAGCGTPAAGPSSTPTTPTSGSASAAASSRAASSTAPSS----
+GTHADPATLDVVVNKTRPVAPPDWAPSDLVAVPGSELPLRAEAATAAADLLDAAAAAGHR
+LTTLSAYRSYDYQVRTYGHWVDELGRAEADRVSARPGYSEHQTGLAWDVGDAATPACDLE
+ACFGDTAAGRWVAAHAAEYGFVIRYPAGAEDVTGFDHEPWHLRYVGSAEAARVEAAGGVL
+ETAWGLPPAPDYAD
+>TT9_LFPAFLNI_01612
+-MRRTLPLAALAALALLVAGCGTPAAGPSSTPTTPTSGSASAAASSGAASSTAPSS----
+GTHADPAALDVVVNKTRPVAPPDWAPSDLVAVPGSELPLRAEAATAAGDLLDAAAAAGHR
+LTTLSAYRSYDYQVRTYGHWVDELGRAEADRVSARPGYSEHQTGLAWDVGDAATPACDLE
+ACFGDTAAGRWVAAHAAEYGFVIRYPAGAEDVTGFDHEPWHLRYVGSAEAARVEAAGGVL
+ETAWGLPPARDYAD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001874.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001874.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8c22ff0bbf2c77e1a1c13a829a5833a88d48d78c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001874.fa
@@ -0,0 +1,40 @@
+>AS2_ACLBLIBL_01224
+MPHDESMCMMNVSAPEPTRPQLPPLARHALLIIWDSVSWILALLAFLVVRYDFGLSPTQWDWVLAFTLIAVVGQVAAGLV
+TQFYLGRHRVGSFSDAGWTAVIVCAIALAIGLALSVAAPAFPRGVALTMPPLALVIMLAGRFLVRNVAAGRPRADASAAV
+PAIVYGAGNAGHQVSQLMRQAEEPPYRIVGFVDDDKGKSRLRIHGLGVRGRGTDLAEVAAELGAEAVIYAISNADAEHVE
+WVSRVCTEEGLDLVVVPPLREMVGGKVTLGSLRHLSVTDLLGRRPISTDISAISDYVSGKVVLVTGAGGSIGSELAVQLH
+HLG-PAKLLLLDRDESALHGVQLDIYGNGLLDTDDIILCDIRDEQA---LQAVFEHHRPQVVFHAAALKHLPMLERFPLE
+GWRTNVLGTRNVLQAAHSVGVQRFV--------------NISTDKAAAPTSVLGATKRLAERLTAWHATTYDLPYLSVRF
+GNVLGSRGSVLISFRNQIEKGGPVTVTHPDVTRYFMTIPEACELVLQAGAIGNPGEVLVLDMGQPVKILDVAKRMIAESG
+QNIDIHFTGLRPGEKMHEVLFSNAEANATSQHPMISEVQ---VPDLDPVVVAELPSDRESILAMIDDEPPVER-------
+--ADDTQTPGLDQAG---ARP--------
+>AS2_ACLBLIBL_02437
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------TWVVTGGAGYIGAHVVRAFR
+ERG-LPVAVVDDLSTGHREFVPDGV---------PFFHADVTDTAA---LTAVLRENEAEGVVHVAGYKYAGESVRVPLT
+AYRANVQGTASVLDAMAAAQVQSVVFSSSAAVYGTPAVERVTEDTPPAPESPYGESKLIGEWLLRDQERAVGIRHTSLRY
+FNVVGSGWADITD-----------LSPHNLFPLVFSALERGERPHIFGDDYPTPDGTCIRDY---VHVQDVAEAHVAAA-
+-------RALTSGVGLHS-VYNLGSGQGTSVHEIMAAVRDVTGVTDPPEVLDRRPGDPARIVA---DGTLAAQDLGWRMR
+HSVEDMVRSAWDAHR----RLGISASGDE
+>SA211_MHAAABBN_00238
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------TWVVTGGAGYIGAHVVRALQ
+GAG-MDVAVVDDLSTGFADFVPADV---------PLLRADVGDVGQ---VATYLTRVGAAGVVHVAGYKFAGESVREPLH
+TYRVNVRGTLGVLEAMERAGVPAIVFSSSAAVYGTPDVERVTEATATAPESPYGESKLIGEWLLADQGRATGLRHTSLRY
+FNVVGSADPALSD-----------TSPHNLFPLVFRALDRGERPRLFGADHPTPDGTCVRDY---VHVADVARAHVAAA-
+-------RALAESRALAP-VYNLGSGAGTSVRQIMEAVGRVTGRDVDPVVEPRRPGDPARIVA---DGSLAARDLGWENR
+HTVEDMVRSAWEARRPPETR---------
+>TT9_LFPAFLNI_00844
+M-------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+------------------------------------------------------------RLLVTGGAGYIGSHFVSVAR
+QQGRADIVVVDDFSTGLRQRVPADV---------PVYTIDLASDAAVATLTTLLKEESIDVVVHFAAKKVVADSVVQPED
+YFRSNVGATVNVLAAMRAAGAASMIFSSSAAVYGEPDSSIVFEDTPTVPINPYGQSKLVSELALANASRAWGLRAVALRY
+FNVAGAEDAILAD-----------TTTTNLMPAIRDVITRGQRLSVFGDDYPTVDGTCVRDY---VHVVDLAEAHLAAL-
+-------PAVQGSTDPATRIYNVGTGSGSSVLEVVDAFRRRPGVDLDYDIQPRRPGDPGALTA---NVSLIEKELGWVAR
+YTRDDIVTSVIDFPP----RL-VT-----
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001878.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001878.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5cf39ab0f70c4111ff2c92bdeef6dca708dc1d71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001878.fa
@@ -0,0 +1,41 @@
+>AS2_ACLBLIBL_01334
+MTATRSGGAATSRLNAKVVGISVAAALGGFLFGFDTSVINGAVDALAGEFGLGPGLTGFT
+VSSALIGCALGAWFAGPIANRRGRVPVMVIAAILFLVSAIGSGLAFGVVDLIFWRMVGGL
+GVGAASVIAPAYIAEVSPAHVRGRLGSLQQLAIVLGIFAALLSDALFATMAGGAAQPFWL
+GVDAWRWMFLAEAVPAVLYGLFALKLPESPRYLVARGRTDEAAEVLHEFTGVDRVNLMIE
+DIRRSLDSEHRESLADLRGPAAGLQPIVWIGILLSVFQQAVGINVIFYYSTTLWRSVGFG
+ESDALTVTVITSVTNIAVTFIAIALVDRVGRRPMLIAGSAGMAVSLGLMALAFSFAETGG
+AESVSLPQPWSTVALVAANAFVVFFGATWGPLVWVLLGEMFPNRIRAGALAVAAAAQWAA
+NFTVSTTFPWLADIGLTLAYGLYALMAALSLAFVAAFVPETKGKTLEQMSDIVVRSPGQR
+RAGRAEAERDLRG
+>KBS0714_MOLHKGIG_01588
+MTATRSGGAATSRLNAKVVGISVAAALGGFLFGFDTSVINGAVDALAGEFGLGAGLTGFA
+VSSALIGCALGAWFAGPIANRRGRVPVMVIAAILFLVSAIGSGLAFGVVDLIFWRVVGGL
+GVGAASVIAPAYIAEVSPAHVRGRLGSLQQLAIVLGIFAALLTDALFATMAGGAAQPFWL
+GVDAWRWMFLAEAVPAVLYGLFALKLPESPRYLVARGRTDEAAEVLHEFTGVDRVNLMIE
+DIRRSLDSERRESLADLRGPSAGLQPIVWIGILLSVFQQAVGINVIFYYSTTLWRSVGFG
+ESDALTVTVITSVTNIAVTLIAIALVDRVGRRPMLIAGSAGMTVSLGLMALAFSFAQTGG
+AESVSLPQPWSTVALVAANAFVVFFGATWGPLVWVLLGEMFPNRIRAGALAVAAAAQWAA
+NFTVSTTFPWLADIGLTLAYGLYAVMAALSLAFVAAFVPETKGKTLEEMSDVVVRSPGQR
+RAVRAEAERDLRG
+>SA211_MHAAABBN_01299
+MTATRSGGAATSRLNAKVVGISVAAALGGFLFGFDTSVINGAVDALAGEFGLGAGLTGFA
+VSSALIGCALGAWFAGPVANRRGRVPVMVIAAILFLVSAIGSGLAFGVVDLIFWRMVGGL
+GVGAASVIAPAYIAEVSPAHVRGRLGSLQQLAIVLGIFAALLTDALFATMAGGAAQPFWL
+GVDAWRWMFLAEAVPAVLYGLFALKLPESPRYLVARGRTDEAAEVLHEFTGVDRVNLMIE
+DIRRSLDSERRESLADLRGPSAGLQPIVWIGILLSVFQQAVGINVIFYYSTTLWRSVGFG
+ESDALTVTVITSVTNIAVTLIAIALVDRVGRRPMLIAGSAGMTVSLGLMALAFSFAQTGG
+AESVSLPQPWSTVALVAANAFVVFFGATWGPLVWVLLGEMFPNRIRAGALAVAAAAQWAA
+NFTVSTTFPWLADIGLTLAYGLYAVMAALSLAFVAAFVPETKGKTLEEMSDVVVRSPGQR
+RAVRAEAERDLRG
+>TT9_LFPAFLNI_01515
+MTATRSGGAATSRLNAKVVGISVAAALGGFLFGFDTSVINGAVDALAGEFGLGAGLTGFA
+VSSALIGCALGAWFAGPIANRRGRVPVMVIAAILFLVSAIGSGLAFGVVDLIFWRVVGGL
+GVGAASVIAPAYIAEVSPAHVRGRLGSLQQLAIVLGIFAALLTDALFATMAGGAAQPFWL
+GVDAWRWMFLAEAVPAVLYGLFALKLPESPRYLVARGRTDEAAEVLHEFTGVDRVNLMIE
+DIRRSLDSERRESLADLRGPSAGLQPIVWIGILLSVFQQAVGINVIFYYSTTLWRSVGFG
+ESDALTVTVITSVTNIAVTLIAIALVDRVGRRPMLIAGSAGMTVSLGLMALAFSFAQTGG
+AESVSLPQPWSTVALVAANAFVVFFGATWGPLVWVLLGEMFPNRIRAGALAVAAAAQWAA
+NFTVSTTFPWLADIGLTLAYGLYAVMAALSLAFVAAFVPETKGKTLEEMSDVVVRSPGQR
+RAVRAEAERDLRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001879.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001879.fa
new file mode 100644
index 0000000000000000000000000000000000000000..63850559bbf9abb8952331071c3d2656914d9faa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001879.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_01336
+MSEFLASRWPDILFRAWQHGWLVLQALAIATVLAIALAVIATRIKALTPIANALTAVGLT
+LPSFALIGVLIPLVGIGTVPAVVVVVFYALLPILRNALVGLRGVDPDVLEAARGMGMGPV
+ALFTRVRLPLAWPVILTGIRVAGQLGMGVAAVAAYVLGPGLGSYIFTGLVSLGGANALNY
+ALVGTLGIVVVALLLDGLLVLLGRLTISKGLRA
+>KBS0714_MOLHKGIG_01586
+MSEFLASRWPDILFRAWQHGWLVLQALAIATVLAIALAVIATRIKALTPIANAFTAVGLT
+LPSFALIGVLIPLVGIGTVPAVVVVVFYALLPILRNALVGLRGVDPEVLEAARGMGMGPV
+ALFTRVRLPLAWPVILTGIRVAGQLGMGVAAVAAYVLGPGLGSYIFTGLVSLGGANALNY
+ALVGTLGIVVVALVLDGLLVLLGRLTISKGLRA
+>SA211_MHAAABBN_01297
+MSEFLASRWPDILFRAWQHGWLVLQALAIATVLAIALAVIATRIKALTPIANAFTAVGLT
+LPSFALIGVLIPLVGIGTVPAVVVVVFYALLPILRNALVGLRGVDPEVLEAARGMGMGPV
+ALFTRVRLPLAWPVILTGIRVAGQLGMGVAAVAAYVLGPGLGSYIFTGLVSLGGANALNY
+ALVGTLGIVVVALVLDGLLVLLGRLTISKGLRA
+>TT9_LFPAFLNI_01513
+MSEFLASRWPDILFRAWQHGWLVLQALAIATVLAIALAVIATRIKALTPIANAFTAVGLT
+LPSFALIGVLIPLVGIGTVPAVVVVVFYALLPILRNALVGLRGVDPEVLEAARGMGMGPV
+ALFTRVRLPLAWPVILTGIRVAGQLGMGVAAVAAYVLGPGLGSYIFTGLVSLGGANALNY
+ALVGTLGIVVVALVLDGLLVLLGRLTISKGLRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001881.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001881.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9525b116e768b093892afd5210231a31d37c216e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001881.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_01411
+MSNDPRTPGSDDGRDPLEEMLRQLFGGNGPDPDEIRRAMEGMGGPGGMPFDPSQLDPAMM
+QQAMAQFQAMMNPGPGSEGPVNWTLAKQAARQAVAGEDPAVGSFARREVDEALRLAELWL
+DGATQTEPVGSVGVAWSRAEWVEATMDQWRRLTEPVAVSMSRAMSAAIEQQLPGQLPEGM
+DASMLSGIQPMLKNMGGTMFGLQLGGAVGALGKEVLSGTDIGVPIAGHRLAMVPVNVEEF
+GDGLSVPDDQVRIYLALREAARMRLFLHSPWLERDLYAAIEQYAAGIRLDTEGIEQAARS
+VDPMDPESMQAVFDGSSFIAAPDATQRAALAQLELLVALVEGWVDVVVAEAATPLESAAA
+LRETMNRRRASGGPAEQAFAALVGLELRPRRLREAAAFWEHVTAEQGKEYREEIWRHPER
+QPTAEDLEDPAGYAGRRTAADASTDSLDDDLRKLLEGGFGDAPKEG
+>KBS0714_MOLHKGIG_01514
+MSNDARTPGSDDGRDPLEEMLRQLFGGQGPDPDEVRRAMEGLGGPGGVPFDPSQLNPAMM
+QQAMAQFQAMMSSGSGSDGPVNWALAKQAARQAVAGEDPAVGSFARREVDEALRLAELWL
+DGVTQTEPVGSVGVAWSRAEWVEATMDQWRRLTEPVAVSMSRAMSAAIEQQLPGQLPEGM
+DASLLGGLQPMLKNMGGTMFGLQLGGAVGALGKEVLSGTDIGLPVAGHRLALVPVNIEEF
+GDGLSVPDDQIRIYLALREAARMRLFLHSPWLERDLYAAVEQYAAGIRLDTEGIERAAQS
+VDPMDPGSLQAVFDGASFIAAPDATQQAALDQLELLVALVEGWVDVVVAEAARPLESAAA
+LRETMNRRRASGGPAEQAFAALVGLELRPRRLREAAAFWEHVTAEHGTEYREEIWRHPER
+QPTAEDLEDPAGYAGRRSAADASAESLDDELRKLLEGGFGDAPREG
+>SA211_MHAAABBN_01223
+MSNDARTPGSDDGRDPLEEMLRQLFGGQGPDPDEVRRAMEGLGGPGGVPFDPSQLNPAMM
+QQAMAQFQAMMSSGSGSDGPVNWALAKQAARQAVAGEDPAVGSFARREVDEALRLAELWL
+DGVTQTEPVGSVGVAWSRAEWVEATMDQWRRLTEPVAVSMSRAMSAAIEQQLPGQLPEGM
+DASLLGGLQPMLKNMGGTMFGLQLGGAVGALGKEVLSGTDIGLPVAGHRLALVPVNIEEF
+GDGLSVPDDQIRIYLALREAARMRLFLHSPWLERDLYAAVEQYAAGIRLDTEGIERAAQS
+VDPMDPGSLQAVFDGASFIAAPDATQQAALDQLELLVALVEGWVDVVVAEAARPLESAAA
+LRETMNRRRASGGPAEQAFAALVGLELRPRRLREAAAFWEHVTAEHGTEYREEIWRHPER
+QPTAEDLEDPAGYAGRRSAADASAESLDDELRKLLEGGFGDAPREG
+>TT9_LFPAFLNI_01441
+MSNDARTPGSDDGRDPLEEMLRQLFGGQGPDPDEVRRAMEGLGGPGGVPFDPSQLNPAMM
+QQAMAQFQAMMSSGSGSDGPVNWSLAKQAARQAVAGEDPAVGSFARREVDEALRLAELWL
+DGVTQTEPVGSVGVAWSRAEWVEATMDQWRRLTEPVAISMSRAMSAAIEQQLPGQLPEGM
+DASLLGGLQPMLKNMGGTMFGLQLGGAVGALGKEVLSGTDIGLPVAGHRLALVPVNIEEF
+GDGLSVPDDQIRIYLALREAARMRLFLHSPWLERDLYAAVEQYAAGIRLDTEGIERAAQS
+VDPMDPGSLQAVFDGASFIAAPDATQQAALDQLELLVALVEGWVDVVVAEAARPLESAAA
+LRETMNRRRASGGPAEQAFAALVGLELRPRRLREAAAFWEHVTAEHGTEYREEIWRHPER
+QPTAEDLEDPAGYTGRRSAADASTESLDDELRKLLEGGFGDAPREG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001882.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001882.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d35185cc49a9ccdd8ebaf32769386870b38966a4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001882.fa
@@ -0,0 +1,32 @@
+>AS2_ACLBLIBL_01482
+MFVTGGVASSLGKGLTASSLGHLLKARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLD
+GLDNVTTGQVYSTVIARERRGEYLGDTVQVIPHITDEICRRMRLPAEPRGDRPAPDVIITEIGGTVGDIESQPFLEAARQ
+VRQDVGRDDVFFLHVSLVPYIGPSQELKTKPTQHSVAALRSIGIQPDAIVLRSDRAVPDDVRGKIARMCDVPQDAVVNCA
+DAPSIYDIPRVIHDQGLDAHVVQSLDLKFKDVDWTAWDALMDAVHHPEHELTVALVGKYVDLPDAYLSVTEALRAGGFAH
+RAKVGIRWVAADECATPEGAAAALADVDAVCVPGGFGVRGLEGKLDALRHAREQRIPTLGLCLGLQSMVIEYARNVLGLE
+DADSTEFDPETASPVIATMAEQEQIVAGEGDLGGTMRLGAFPATLRPGSVVAEAYGTTEVTERHRHRYEVNNAYRDRLEE
+AGLAICGTSPDGALVEFVELPRDVHPYYVSTQAHPEFSSRPTRPHPLFAGLVAAGLARRADAAARR
+>KBS0714_MOLHKGIG_01417
+MFVTGGVASSLGKGLTASSLGHLLKARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLD
+GLDNVTTGQVYSTVIARERRGEYLGDTVQVIPHITDEICRRMRLPAEPRGDRPAPDVIITEIGGTVGDIESQPFLEAARQ
+VRQDVGRDDVFFLHVSLVPYIGPSQELKTKPTQHSVAALRSIGIQPDAIVLRSDRAVPDDVRGKIARMCDVPQDAVVNCA
+DAPSIYDIPRVIHDQGLDAHVVQSLDLKFKDVDWTAWDALMDAVHHPEHELTVALVGKYVDLPDAYLSVTEALRAGGFAH
+RAKVGIRWVAADECATPEGAAVALADVDAVCVPGGFGVRGLEGKLGALRHAREQRIPTLGLCLGLQSMVIEYARNVLGLE
+DADSTEFDPETASPVIATMAEQEQIVAGEGDLGGTMRLGAFPATLRPGSVVAEAYGTTEVTERHRHRYEVNNAYRDRLEE
+AGLAICGTSPDGALVEFVELPRDVHPYYVSTQAHPEFSSRPTRPHPLFAGLVAAGLARRADAAARR
+>SA211_MHAAABBN_01148
+MFVTGGVASSLGKGLTASSLGHLLKARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLD
+GLDNVTTGQVYSTVIARERRGEYLGDTVQVIPHITDEICRRMRLPAEPRGDRPAPDVIITEIGGTVGDIESQPFLEAARQ
+VRQDVGRDDVFFLHVSLVPYIGPSQELKTKPTQHSVAALRSIGIQPDAIVLRSDRAVPDDVRGKIARMCDVPQDAVVNCA
+DAPSIYDIPRVIHDQGLDAHVVQSLDLKFKDVDWTAWDALMDAVHHPEHELTVALVGKYVDLPDAYLSVTEALRAGGFAH
+RAKVGIRWVAADECATPEGAAVALADVDAVCVPGGFGVRGLEGKLGALRHAREQRIPTLGLCLGLQSMVIEYARNVLGLE
+DADSTEFDPETASPVIATMAEQEQIVAGEGDLGGTMRLGAFPATLRPGSVVAEAYGTTEVTERHRHRYEVNNAYRDRLEE
+AGLAICGTSPDGALVEFVELPRDVHPYYVSTQAHPEFSSRPTRPHPLFAGLVAAGLARRADAAARR
+>TT9_LFPAFLNI_01367
+MFVTGGVASSLGKGLTASSLGHLLKARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLD
+GLDNVTTGQVYSTVIARERRGEYLGDTVQVIPHITDEICRRMRLPAEPRGDRPAPDVIITEIGGTVGDIESQPFLEAARQ
+VRQDVGRDDVFFLHVSLVPYIGPSQELKTKPTQHSVAALRSIGIQPDAIVLRSDRAVPDDVRGKIARMCDVPQDAVVNCA
+DAPSIYDIPRVIHDQGLDAHVVQSLDLKFKDVDWTAWDALMDAVHHPEHELTVALVGKYVDLPDAYLSVTEALRAGGFAH
+RAKVGIRWVAADECATPEGAAVALADVDAVCVPGGFGVRGLEGKLGALRHAREQRIPTLGLCLGLQSMVIEYARNVLGLE
+DADSTEFDPETASPVIATMAEQEQIVAGEGDLGGTMRLGAFPATLRPGSVVAEAYGTTEVTERHRHRYEVNNAYRDRLEE
+AGLAICGTSPDGALVEFVELPRDVHPYYVSTQAHPEFSSRPTRPHPLFAGLVAAGLARRADAAARR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001883.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001883.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1e08759a98d4d74aa4e242aac104f33132c1f9bb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001883.fa
@@ -0,0 +1,33 @@
+>AS2_ACLBLIBL_01577
+MSVPVLLLA----VVAVALAGPVPVLLGRAAWPA--RSPVLAALAWQAVALAGGLALLGA
+PL--VWGLLPWGEGLVAAAPRLAAHLAGDAAAAPRPTGL-------PVGLHL-------M
+AVGAGAGIAVHLLLTTAVTVVRTLRARARHRDAVELVATGPTDAGRWPGGARGARELPVD
+DPLAYCVPGSPRGGEALTVVSSGLLARLSPEELDAVVAHERAHLDQHHGLLRLAFAAWAR
+ACAWLPTAETARLAVVQVTEMLADDAALRRAPADVLVRALA-----QAAPGPDA-GPAGQ
+TDATGPTSAGLGDRAARLLTRPAPLPAAAAALVAAASLALPAATAAALLGLP--------
+---
+>AS2_ACLBLIBL_02666
+MTAGILTMALCTGLVALAVFGP---WLLRHAAPALVRVPRLAI-----VVVAGGIGVWLV
+TLLAIGPVLAWAGAGPALLPERAAEVCQRCLTAANPFSADTTETLIPAVLLLALPVALAL
+ALGAGLARQM-------------VRRSSRSRDAARTLLHG---ARRQLLHGHEVALVDAE
+HPFALTFPDRHGG----IVLSTGAVRALGPGELAAVLAHEHAHLHQRHHLITALVDSIAA
+YLRWVPLIRAVADALPHYLEIAADDQARRHAGTRALVSALVKLGERTHPAMPQHSCPVAL
+HAA-GP------ERIRHLVHPSAGLAGALPAVAIAAYL-VGMAALAALVHLPYVSAALTG
+CTI
+>KBS0714_MOLHKGIG_01315
+MSVPVLLLA----VVAVALAGPVPVLLGRAAWPA--RSPVLAALAWQAVALAGGLALLGA
+PL--VWGLLPWGEGLVAAAPRLAAHLAGDAAAAPRPTGL-------PVGLHL-------M
+AVGAGAGIAVHLLLTTAVTAVRTLRARARHRDAVELVATGPADAGRWPGGARGARELPVD
+DPLAYCVPGSPRGGEALTVVSSGLLARLSPEELDAVVAHERAHLDQHHGLLRLAFAAWAR
+ACAWLPTAETARLAVVQVTEMLADDAALRRAPADVLVRALA-----QAAPGPDA-GPAGQ
+TDATGPTSAGLGDRAARLLTRPAPLPAAAAALVAAASLALPAATAAALLGLP--------
+---
+>KD337_NAFOICDF_01473
+MSFSVLVLA----AVALCLAGPVPVLLGRAAWPS--RSPGLAVLAWQAVALAGGLALVGT
+PL--LWGLHPWGDGLLDAVPALLADLTSPDSGIARPGSA-------PAEVHL-------L
+AVGAGLTVALHLLLTTAVTALRTLRARSRHRAALELIATDPERADDWPGGPRGARELPVD
+LPLAYCVPGVPGGGTPLTVVSRGLLERLSPEELRAVLLHERAHLAQHHGLLRLAFASWAR
+ACAWLPSAETARAGVVLVTEMLADDAARRTAPAPVLARALALTVRPAEAPGASASGPDAE
+PDA---ESGGLGRRVARLLDPPAPVPGAVAGAAAAACLALPLAVLAVILG-P--------
+--A
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001885.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001885.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e36d171c87ef9d0a0070601b2b5fc7622c91e6b9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001885.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_01665
+MPALPLGAPVPDDGRLPAAVGERVR-AAEDGAARTFSLYVHVPFCTVRCGYCDFNTYTAV
+DLGPGAGRGDYWESAVAELGFAQRALEASAVPARPLHTVFFGGGTPTLLPAADLVRILRE
+AVERFGIVPGAEVTTEANPDTVTPEYARELAAGGFTRLSLGMQSAAPHVLATLERTHRPE
+SVPAAVAAARDAGLEVSLDLIYGTAGESLQDWRDTLHAAVELAPDHVSAYSLIVEEGTKL
+GAQVARGEVADVDPDDQADKYLLAEEVLGAAGFRWYEVSNWAHDPEGAGVHRARHNVAYW
+EDQDWWGIGPGAHSHVAGVRFWNAKHPAAYAQRLATGVTPAVGREQPDAAARRLERIMLA
+ARTSEGLPAAEAVSDEPGDGERVRRVTAELIAAGLLDGRAALAGRLVPTLQGRLRNDAIV
+RALAGF
+>KBS0714_MOLHKGIG_01223
+MPALPLGEPVPDDGRLPADVGQRVRAAAGDGAARTFSLYVHVPFCTVRCGYCDFNTYTAV
+DLGPGAGRGDYWESAVAELDFAADVLASSDVPARPLHTVFFGGGTPTLLPAADLVRILQA
+AVDRFGIAPGAEVTTEANPDTITPEYARELAAGGFTRLSLGMQSAVPHVLATLERTHRPE
+SVPAAVAAAREAGLEVSLDLIYGTAGESLADWRATLEAAVALAPDHVSAYSLIVEEGTKL
+GAQVARGEVADVDPDDQADKYLLAEELLGAAGYRWYEVSNWARDPQGSGVHRARHNVAYW
+EDQDWWGIGPGAHSHLAGVRFWNAKHPAAYAQRLATGVTPAVGRERPDADARRLERIMLA
+VRTVDGLPTAELVSETPGEAARIRGAIAELIAAGLLDGRAAVDGRIIPTLEGRLRNDAIV
+RALAGF
+>SA211_MHAAABBN_00942
+MPALPLGEPVPDDGRLPADVGQRVRAAARDGAARTFSLYVHVPFCTVRCGYCDFNTYTAV
+DFGPGAGRGDYWESAVAELDFAADVLASSDVPARPLHTVFFGGGTPTLLPAADLVRILQA
+AVDRFGIAPGAEVTTEANPDTITPEYARQLAAGGFTRLSLGMQSAMPHVLATLERTHRPE
+SVPAAVAAAREAGLEVSLDLIYGTAGESLADWRATLEAAVVLAPDHVSAYSLIVEEGTKL
+GAQVARGEVADVDPDDQADKYLLAEELLSAAGYRWYEVSNWARDPRGSGVHRARHNVAYW
+EDQDWWGIGPGAHSHLAGVRFWNAKHPAAYAQRLATGVTPAVGRERPDADARRLERIMLA
+VRTVGGLPTAELVSETPGEAARIRGAIAELIAAGLLDGRAAVDGRIIPTLEGRLRNDAIV
+RALAGF
+>TT9_LFPAFLNI_01181
+MPALPLGEPVPDDGRLPADVGQRVRAAARDGAARTFSLYVHVPFCTVRCGYCDFNTYTAV
+DLGPGAGRGDYWESAVAELDFAADVLASSDVPARPLHTVFFGGGTPTLLPAADLVRILQA
+AVDRFGIAPGAEVTTEANPDTITPEYARQLAAGGFTRLSLGMQSAMPHVLATLERTHRPE
+SVPAAVAAAREAGLEVSLDLIYGTAGESLADWRATLEAAVALAPDHVSAYSLIVEEGTKL
+GAQVARGEVADVDPDDQADKYLLAEELLGAAGYRWYEVSNWARDPQGSGVHRARHNVAYW
+EDQDWWGIGPGAHSHLAGVRFWNAKHPAAYAQRLATGVTPAVGRERPDADARRLERIMLA
+VRTVGGLPTAELVSETPGEAARIRGAIAELIAAGLLDGRAAVDGRIVPTLEGRLLNDAIV
+RALAGF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001887.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001887.fa
new file mode 100644
index 0000000000000000000000000000000000000000..68d5b19675db556f78ad693c35c724d28749b10b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001887.fa
@@ -0,0 +1,33 @@
+>AS2_ACLBLIBL_01781
+MEINGLTWGLTITLIVGLLAFDYFAHVRKAHTPTIREAAIWSGIYVGLALLFGLVFFAVG
+DTQHAVEYYTGYLLEKALSVDNLFVFLVIMASFRVPREYQQKVLLFGITFALISRTIFIL
+LGAAVIAAWSDVFYLFGLFLLVIAGGQLKGEMAGDADDAKDEADNIMVRMVKRFLPASDR
+FDGDKLFTLENGKRVMTPMLLVMIAIGATDILFAFDSIPAIFGVTTEAYIVFTATAFSLM
+GLRQLYFLIDGLLDRLVYLAYGLSALLAFIGVKLILHALHENNLPFINGGENVPVVTIPT
+TLSLVVVVVILAITVVVSLYSPKGQALRALQNAEKFSYRYSKLDETADPAERSRAAALMD
+EWTAKAEGLDQKWRDELLEHKDTWSGIIRTAHETRLADPRDDDARGVSERIVRQDGPTV
+>KBS0714_MOLHKGIG_01112
+MEINGLTWGLTIALIVGLLAFDYFAHVRKAHTPSIREAAIWSGVYVGLALVFGLVFFAFG
+DTQHAVEYYTGYLLEKALSVDNLFVFLVIMASFRVPREYQQKVLLFGITFALISRTLFIL
+LGAAVIAAWSDVFYLFGLFLLIIAGGQLKGEMSGDAEGAQDEADNVMVRLVKRFLPASEQ
+FDGDRLFTTVDGKRLMTPMLLVMIAIGATDILFAFDSIPAIFGVTQEAYIVFTATAFSLM
+GLRQLYFLIDGLLDRLVYLAYGLSALLAFIGVKLILHALHENNLPFINGGENVPVVEIPT
+TLSLVVVVVILAITVAISLASPKGQALRALQNAEKYSYRYSKLPEDADPAERERAAALMD
+RWTARAEAVDQRWRDQLLEHKDAWSAIIRTAHETRLADPRDDDARGVSEQIVRQDGPTV
+>SA211_MHAAABBN_00831
+MEINGLTWGLTIALIVGLLAFDYFAHVRKAHTPSIREAAIWSGIYVGLALLFGLVFFAVG
+DTQHAVEYYTGYLLEKALSVDNLFVFLVIMASFRVPREYQQKVLLFGITFALISRTLFIL
+LGAAVIAAWSDVFYLFGLFLLIIAGGQLKGEMSGDAEGAQDEADNVMVRLVKRFLPASEQ
+FDGDRLFTTVDGKRLMTPMLLVMIAIGATDILFAFDSIPAIFGVTQEAYIVFTATAFSLM
+GLRQLYFLIDGLLDRLVYLAYGLSALLAFIGVKLILHALHENNLPFINGGENVPVVEIPT
+TLSLVVVVVILAITVAISLASPKGQALRALQNAEKYSYRYSKLAEDADPAERERAAALMD
+RWTARAEALDQRWRDQLLEHKDAWSAIIRTAHETRLADPRDDDARGVSEQIVRQDGPTV
+>TT9_LFPAFLNI_01062
+MEINGLTWGLTIALIVGLLAFDYFAHVRKAHTPSIREAAIWSGVYVGLALVFGLVFFAFG
+DTQHAVEYYTGYLLEKALSVDNLFVFLVIMASFRVPREYQQKVLLFGITFALISRTLFIL
+LGAAVIATWSDVFYLFGLFLLIIAGGQLKGEMSGDAEGAQDEADNVMVRLVKRFLPASEQ
+FDGDRLFTTVDGKRLMTPMLLVMIAIGATDILFAFDSIPAIFGVTQEAYIVFTATAFSLM
+GLRQLYFLIDGLLDRLVYLAYGLSALLAFIGVKLILHALHENNLPFINGGENVPVVEIPT
+TLSLVVVVVILAITVAISLASPKGQALRALQNAEKYSYRYSKLPEDADPAERERAAALMD
+RWTARAEAVDQRWRDQLLEHKDAWSAIIRTAHETRLADPRDDDARGVSEQIVRQDGPTV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001888.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001888.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cae48d93e417fcf53b4513c828deff1913b8edac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001888.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_01872
+MSTPTGYRVQDPSTDQVVETFPTLADGEVDQLLAAAETAQRAWAARPIEERATIVQKVAD
+LFEERKDELAQIIATEMGKRVTEGVEEAEFSSAIFGYFADKGPTLAADRPIETFEGGRAM
+IRHLPLGVLLGVMPWNFPYYQIARFAAPNLMLGNAIVLKHAEICPRSALAVQQIMDDAGV
+PAGVYTNVFATHDQIAEFIADPRVAGVSLTGSERAGSVIGALAGQHLKKAVLELGGSDPY
+IVLDAEDPAEAARTAWATRMYNMGQACNSNKRMIVSADIHDAFVAELVSLAEAMKPGEAA
+DEDPTVFTPLSSRGAAEGLAEQVERARQQGATVHVGGTVTDEAGARFAPAVITGVTSEMD
+AYREELFGPVAVVYKVESADEALALANDSQYGLGGAVFSQDEAQAERVARQLEVGMANVN
+TPAGEGAEIPFGGVKRSGFGRELGPLGMDEFVNKQMYFVQD
+>KBS0714_MOLHKGIG_01016
+MSTPTGYRVQDPSTDQVVETFPALADGEVDQVLAAAETAQRAWAARPIEERATIVQKVAD
+LFEERKDELAQIIATEMGKRVTEGVEEAEFSSAIFGYFADKGPTLAADRPIETYGGGRAM
+IRHLPLGVLLGVMPWNFPYYQIARFAAPNLMLGNAIVLKHAEICPRSALAVQQIMDDAGV
+PAGVYTNVFATHDQIAEFIADPRVAGVSLTGSERAGSVIGALAGQHLKKAVLELGGSDPY
+IVLDAEDPAEAARTAWATRMYNMGQACNSNKRMIVSADIHDAFVAELVSLAEAMKPGEAA
+DEDPTVFTPLSSRGAAEGLAEQVERARQQGATVHVGGTVTDEAGARFAPAVITGVTSEMD
+AYREELFGPVAVVYKVESADEALALANDSQYGLGGAVFSQDEAKAERIARQLEVGMANVN
+TPAGEGAEIPFGGVKRSGFGRELGPLGMDEFVNKQTYFVQD
+>SA211_MHAAABBN_00730
+MSTPTGYRVQDPSTDQVVETFPALADGEVDQVLAAAETAQRAWAARPIEERATIVQKVAD
+LFEERKDELAQIIATEMGKRVTEGVEEAEFSSAIFGYFADKGPTLAADRPIETYGGGRAM
+IRHLPLGVLLGVMPWNFPYYQIARFAAPNLMLGNAIVLKHAEICPRSALAVQQIMDDAGV
+PAGVYTNVFATHDQIAEFIADPRVAGVSLTGSERAGSVIGALAGQHLKKAVLELGGSDPY
+IVLDAEDPAEAARTAWATRMYNMGQACNSNKRMIVTADIHDAFVAELVSLAEAMKPGEAA
+DEDPTVFTPLSSRGAAEGLAEQVERARQQGATVHVGGTVTDEAGARFAPAVITGVTSEMD
+AYREELFGPVAVVYKVESADEALALANDSQYGLGGAVFSQDEAQAERIARQLEVGMANVN
+TPAGEGAEIPFGGIKRSGFGRELGPLGMDEFVNKQMYFVQD
+>TT9_LFPAFLNI_00960
+MSTPTGYRVQDPSTDQVVETFPALADGEVDQVLAAAETAQRAWAARPIEERATIVQKVAD
+LFEERKDELAQIIATEMGKRVTEGVEEAEFSSAIFGYFADKGPTLAADRPIETYGGGRAM
+IRHLPLGVLLGVMPWNFPYYQIARFAAPNLMLGNAIVLKHAEICPRSALAVQQIMDDAGV
+PAGVYTNVFATHDQIAEFIADPRVAGVSLTGSERAGSVIGALAGQHLKKAVLELGGSDPY
+IVLDAEDPAEAARTAWATRMYNMGQACNSNKRMIVSADIHDAFVAELVSLAEAMKPGEAT
+DEDPTVFTPLSSRGAAEGLAEQVERARQQGATVHVGGTVTDEAGARFAPAVITGVTSEMD
+AYREELFGPVAVVYKVESADEALALANDSQYGLGGAVFSQDEAQAERIARQLEVGMANVN
+TPAGEGAEIPFGGVKRSGFGRELGPLGMDEFVNKQMYFVQD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001895.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001895.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e6a167fd674b5ccaa3e26648062799ab9f75159d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001895.fa
@@ -0,0 +1,32 @@
+>AS2_ACLBLIBL_02247
+MSSLNTVKDTATAAGTAELETDILVIGWGKGGKTLARTLGSQGR----KVTLVER-DAGMVGGTCINVACVPT-KALVHR
+ADAVRPGDDPDAAVASAWDFRDALTSKLRDANRAMLEDLDAVTLVQGEARSTGERTVEVRPAEAADGDDDGE-RLTIRAR
+HV-----VVNTGTTPLRPEMPGVD-LPGVHDSETLQLQMDRSRAPRR---------------------------------
+--------------------------------------------------------------------------------
+--------------RRLRPRPP-----------------RSSRHR--------------RSARAA---------------
+--------------------------------------------------------------------------------
+----------------------------------
+>KD337_NAFOICDF_00402
+MSEQ----------------------------KTTTPDLDPTGQAIATQAPLAERYDHVIVGGGMAAAKAVESIRELAPE
+ASVAVVSADTAAPV-----YRPDLSKTLWADADAHVED-SILATPDSEGTAPGERTAYRLGAEVTAIDPQAH-TVTVDGR
+TVGYGSLLLATGAEPVAAGIPQSERVHTYRTVADYRRLKEASGPGTTAVVVGGGYIGTELAAGLTMAGTDVTLV----VP
+----HRPLLARMLPAELSAAVEATFQEKGVRIAEGR-LASAAESGDAVTARLEDGTELRADLLVLALG--VRPRATLAEA
+AGLALADQG-VRVDDRLRTSAPDVYAAGDIATFPDA---LLGERRVEHADAAETQGA--TAGRNMVGADQAYTHTPFFWA
+DLF-DYGYEAIGELDTRHRTVVDLATGEDGRPDPSTAVVYYADEAGHVRGVLLWNVWDSVPQARALIERTAQEPVADLGS
+LKGRI--------------------------PLG
+>KD337_NAFOICDF_00715
+MTPQH-----------------VLILGSGAAGAAAARTLASRDD---VRVTLVTR-----TGETPYTRMLIKG-IAFGQT
+PPEMIKLPLPQIEVIADTVLKVDTSAKQAQLTSGAQVSYDALIVATGSMPRS-------LPADVFGGDDAGQGRVTA---
+-------------------------LHSVGDALGIRKLLTGLGRPARVAIYGGGIIAAETASSLQADGHMVTLVSRSSVP
+GVGAFGAPVAERLAADHAAKVQARF---------GRTLQHVDETESGVTITLNDGNPVVADFLLLALG--TTPAAPSPW-
+------TNG-IDVDDHLRAAADHVYAAGGVATHHDE---ALDAWRIDHWEDAAAQGA--HAARAAL-HDLGVSDDPGAYL
+PRS-PYMAMVYGQMISG----VGYTAGADAHLEAGEEFIVRHEIDGIVVGVTGIDAVGTVYQWGQQLHGV----------
+--------------------------------RA
+>KD337_NAFOICDF_02120
+MSSLDTVKDTVTTAGTAELETDILVIGWGKGGKTLAKTLGSQGR----KVTLVER-DAGMVGGTCINVACVPT-KALVHR
+ADAVRPGDDPDAAVASAWDFRDALTSKLRDANRAMLEDLDAVTLVQGEARFTGERTVEVRPAEAADGDDDGE-RLTIRAR
+HV-----VVNTGTTPLRPEMPGVD-LPGVHDSETLQLQMDRTRAPRRAVVVGSGPVGLELASMLAGFGAEVTVLVR----
+----GEQILPDESDAVRDSLVEA-LQDRGVRLATGASATGFAEADGGLRVDLEEGEPIAADIVVLATGRASTAEALDPAA
+AGIELDEKGFIAVDEHLRTSAPDVWAVGDVNGGPQQTYISLDDHRIVTGQLAG-DGAYSRADRVAV-PTTVFTTPPLGSV
+GMTAEQAREAGHEVKVASKPVAKIA----AMPRPKIE-----EDAHGVIEVVVDAATDLVLGAR--LHCVEAQELVNLVA
+LAMRADVTASALRDGIWTHPSATEALNEVLGELS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001897.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001897.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3b5d9efc68de30dd53e10a55b0b368a395a87888
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001897.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_02273
+MIMGFIDQMRAKGHAVESICRVLRQEGCQIAARTYRAWRRRSASARDTSDAVLLNVLHDL
+VGTPEGLYGRRKMTAWLRREGHQVGAGRVDRLMRVAGMNGVRRGRPVRTTVPAKDGCRAG
+DLLNRDFTAAAPNTKWVADFTYVRTWAGFVYVAFVLDCYSQRILAWHAATAKTTPLVLTP
+LRIALWDRDRHGHPVQPGELIAHSDAGSQYTSLRFAEHLAAEGIAASIGTVADAYDNALM
+ECVIGLYKTECITTTIFHNGPYKTIADVEYATAGWVEWYNNRRLHSSLAMTTPAEYETAY
+YAALNRELAPT
+>KD337_NAFOICDF_01825
+MIMGFIDQMRAKGHAVESICRVLRQEGCQIAARTYRAWRRRSASARDTSDAVLLNVLHDL
+VGTPEGLYGRRKMTAWLRREGHQVGAGRVDRLMRVAGMNGVRRGRPVRTTVPAKDGCRAG
+DLLNRDFTAAAPNTKWVADFTYVRTWAGFVYVAFVLDCYSQRILAWHAATAKTTPLVLTP
+LRIALWDRDRHGHPVQPGELIAHSDAGSQYTSLCFAEHLAAEGIAASIGTVADAYDNALM
+ECVIGLYRTECITTTIFHNGPYKTIADVEYATAGWVEWYNNRRLHSSLAMTTPAEYETAY
+YAALNRELAPT
+>SA211_MHAAABBN_00323
+MIMGFIDQMRAKGHAVESICRVLRQEGCQIAARTYRAWRRRSASARDTSDAVLLNVLHDL
+VGTPEGLYGRRKMTAWLRREGHQVGAGRVDRLMRVAGMNGVRRGRPVRTTVPAKDGCRAG
+DLLNRDFTAAAPNTKWVADFTYVRTWAGFVYVAFVLDCYSQRILAWHAATAKTTPLVLTP
+LRIALWDRDRHGHPVQPGELIAHSDAGSQYTSLRFAEHLAAEGIAASIGTVADAYDNALM
+ECVIGLYKTECITTTIFHNGPYKTIADVEYATAGWVEWYNNRRLHSSLAMTTPAEYETAY
+YAALNRELAPT
+>TT9_LFPAFLNI_00592
+------------------------------------------------------------
+--------------------------------MRVAGMNGVRRGRPVRTTVPAKDGCRAG
+DLLNRDFTAAAPNTKWVADFTYVRTWAGFVYVAFVLDCYSQRILAWHAATAKTTPLVLTP
+LRTALWDRDRHGHPVQPGELIAHSDAGSQYTSLRFAEHLAAEGIAASIGTVADAYDNALM
+ECVIGLYKTECITTTIFHNGPYKTIADVEYATAGWVEWYNNRRLHSSLAMTTPAEYETAY
+YAALNRELAPT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001898.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001898.fa
new file mode 100644
index 0000000000000000000000000000000000000000..985514eff48f9a2e291b6405afa2e2ae9d17c4a1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001898.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_02295
+MSALALGPAVMFTPADRPERYAKALERADAVILDLEDAVTPDARPAARDAVRAAWEGRAA
+GGADGGPLDVARVVVRVNPAGGADYTADLAMLAETGWRTLMLAKAESAAQVDGLVAAMGE
+DVRVVALCETAAGVLAAAELAAHPNVGALMWGAEDLVASMGGSSSRTADGAYRSVVTHAR
+AAVLLAAAAHGAAAWDAVHLDLADEAGLAAEAEDAVALGCAATVCLHPRQVPVVRSAYTP
+AAEAVERAHRVLSEAEGRRGAFELDGAMVDEVVLAQARAVLRRAEAAGAAAG
+>KBS0714_MOLHKGIG_00667
+MSALTLGPAVMFTPADRPERYATALERADAVILDLEDAVIPEARPAARDAVAAAWAGRAT
+GGVDGGPLDEDRVVVRVNPAGTADHDADLAMLAGTGWRTLMLAKAESAAQVDGVVAALGP
+QTRVVALCETAAGILAAAELAAHPHVGALMWGAEDLVASMGGSSSRTPEGAYRSVVQHAR
+ATVLLAAAAHGAAAWDAVHLDLGDEAGLAAEAEDAAALGCTATVCLHPRQVPVVRSAYTP
+APEAVERARRVLAAAEGRHGAFELDGTMVDEVVLAQARAVLRRADAARPAGA
+>SA211_MHAAABBN_00404
+MSALTLGPAVMFTPADRPERYATALERADAVILDLEDAVTPDARPTARDAVAAAWAGRAT
+GGVDGGPLDEDRVVVRVNPAGTADHDADLAMLAGTGWRTLMLAKAESAAQVDGVVAALGP
+QTRVVALCETAAGILAAADLAAHPHVGALMWGAEDLVASMGGSSSRTPEGAYRSVVQHAR
+ATVLLAAAAHGAAAWDAVHLDLGDEAGLAAEAEDAVALGCTATVCLHPRQVPVVRSAYTL
+APEAVERARRVLAAAEGRHGAFELDGAMVDEVVLAQARAVLRRADAPRPASA
+>TT9_LFPAFLNI_00637
+MSALTLGPAVMFTPADRPERYATALERADAVILDLEDAVTPDARPTARDAVAAAWAGRVT
+GGVDGGPLDEGRVVVRVNPAGTADHDADLAMLAGTGWRTLMLAKAESAAQVDGVVAALGP
+QTRVVALCETAAGILAAADLAAHPHVGALMWGAEDLVASMGGSSSRTPEGAYRSVVQHAR
+ATVLLAAAAHGAAAWDAVHLDLGDEAGLAAEAEDAVALGCTATVCLHPRQVPVVRSAYTP
+APEAVERARRVLAAAEGRHGAFELDGAMVDEVVLAQARAVLRRADAARPASP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001899.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001899.fa
new file mode 100644
index 0000000000000000000000000000000000000000..082c852ada475462f00899fa1101591cbe541d41
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001899.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02296
+MGRAEPGAAPERVEIVQRGRYADELAVGQVYLHRPGRTLTEADNVLFTTLTMNPQALHLD
+HAFAQTQSFGRPLVNSMLTLSTLVGLAVAQTTQGTLVAQLGLGEIAFPAPVFHGDTLYGR
+SEVRAVRESSSRPGQRIVTFAMTGENQHGDVVVRAERTCLMWTEAAHADARAQAA-ADAA
+EERA
+>KBS0714_MOLHKGIG_00666
+M--------TERVEIEQRGRYADELAVGQVYLHRPGRTLTEADNVLFTTLTMNPQALHLD
+HAYAADQPFGRPLVNSMLTLSTLVGLAVGQTTQGTLVAQLGLGEIAFPKPVFHGDTLYGR
+SEVTAIRESSSRPGQRIVTFAMTGENQHGDVVVRAQRTCLMWTAQAHAEAKAKAADAAGT
+GERA
+>SA211_MHAAABBN_00403
+M--------TERVEIEQRGRYADELAVGQVYLHRPGRTLTEADNVLFTTLTMNPQALHLD
+HAYAADQPFGRPLVNSMLTLSTLVGLAVGQTTQGTLVAQLGLGEIAFPKPVFHGDTLYGR
+SEVTAIRESSSRPGQRIVTFAMTGENQHGDVVVRAQRTCLMWTAQAHAEAKAKAADAAGT
+GERA
+>TT9_LFPAFLNI_00636
+M--------TERVEIEQRGRYADELAVGQVYLHRPGRTLTEADNVLFTTLTMNPQALHLD
+HAYAAAQPFGRPLVNSMLTLSTLVGLAVGQTTQGTLVAQLGLGEIAFPKPVFHGDTLYGR
+SEVTAIRESSSRPGQRIVTFAMTGENQHGDVVVRAQRTCLMWTAQAHAEAKAKAADAAGT
+GERA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001900.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001900.fa
new file mode 100644
index 0000000000000000000000000000000000000000..70f07723de13840a2728fa9ab23afb4f038f19dc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001900.fa
@@ -0,0 +1,33 @@
+>AS2_ACLBLIBL_02297
+MSTKHRTLPALEEDYQVLSDTVREFADEVVAPVSAELDAKHEFPYEIVAQMGEMGLFGLP
+FPEEFGGMGGDYFALALALEQLGRVNQSVAITLEAGVSLGAMPLLKFGTQEQKEAWLPDL
+VAGRHLAGFGLTEPGAGSDAGGTQTTAVLEDGQWRINGAKEFITNSGTDITSLVTVTAVT
+GTVEGRTGADGKPAKEISTILVPAGTEGFSVAKAYDKVGWNSSDTHALHFSDVRVPEENL
+LGTRGRGFANFLEILDEGRIAIAALATGAAQGCVDESIAYAKQRTSFGQRIGEFQAVSFK
+IARMQARAHAARLAYYEAAQKMLAGKPFKTEAAMAKLIAGEAAMDNARDATQVFGGYGFM
+NETLVARHYRDSKILEVGEGTTEVQLMLIARELGL
+>KBS0714_MOLHKGIG_00665
+MSTKHRTLPALEEDYQVLSDTVREFADEVVAPVSAELDAKHEFPYEIVAQMGEMGLFGLP
+FPEEYGGMGGDYFALALALEQLGRVNQSVAITLEAGVSLGAMPLLKFGTEEQKQRWLPDL
+VAGTHLAGFGLTEPGAGSDAGGTQTTAALEDGQWRINGAKEFITNSGTDITSLVTVTAVT
+GTVEGRTGHDGRPAKEISTILVPAGTEGFSVAKAYDKVGWNSSDTHALHFTDARVPEENL
+LGARGRGFAHFLEILDEGRIAIAALATGAAQGCVDESVAYATQRTSFGQKIGQFQAVSFK
+IARMQARAHAARLAYYEAAQKMLAGKPFKTEAAMAKLIAGEAAMDNARDATQVFGGYGFM
+NETLVARHYRDSKILEIGEGTTEVQLMLIARELGL
+>SA211_MHAAABBN_00402
+MSTKHRTLPALEEDYQVLSDTVREFADEVVAPVSAELDAQHEFPYEIVAQMGEMGLFGLP
+FPEEYGGMGGDYFALALALEQLGRVNQSVAITLEAGVSLGAMPLLKFGTEEQKQRWLPDL
+VAGTHLAGFGLTEPGAGSDAGGTQTTAALEDGQWRINGAKEFITNSGTDITSLVTVTAVT
+GTVEGRTGHDGRPAKEISTILVPAGTEGFSVAKAYDKVGWNSSDTHALHFSDVRVPEENL
+LGARGRGFAHFLEILDEGRIAIAALATGAAQGCVDESVAYAKQRTSFGQKIGQFQAVSFK
+IARMQARAHAARLAYYEAAQKMLAGKPFKTEAAMAKLIAGEAAMDNARDATQVFGGYGFM
+NETLVARHYRDSKILEVGEGTTEVQLMLIARELGL
+>TT9_LFPAFLNI_00635
+MSTKHRTLPALEEDYQVLSDTVREFADEVVAPVSAELDAQHEFPYEIVAQMGEMGLFGLP
+FPEEYGGMGGDYFALALALEQLGRVNQSVAITLEAGVSLGAMPLLKFGTEEQKQRWLPDL
+VAGTHLAGFGLTEPGAGSDAGGTQTTAALEDGQWRINGAKEFITNSGTDITSLVTVTAVT
+GTVEGRTGHDGRPAKEISTILVPAGTEGFSVAKAYDKVGWNSSDTHALHFSDVRVPEENL
+LGARGRGFAHFLEILDEGRIAIAALATGAAQGCVDESVAYAKQRTSFGQKIGQFQAVSFK
+IARMQARAHAARLAYYEAAQKMLAGKPFKTEAAMAKLIAGEAAMDNARDATQVFGGYGFM
+NETLVARHYRDSKILEVGEGTTEVQLMLIARELGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001902.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001902.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6af1beac84adf40e61b89abfa83dfe0205b3dc74
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001902.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02317
+MRLIDVGLREGHEYRVRDTWLTVPNVITLVRLALVPVFVWLTVTDQFLAAFLTLAFLSST
+DWVDGYIARRFDMISTVGRWLDPVADRLSLVTVALTFVLTGIAPAWLVLSILIPDVVLTL
+VCLRLFGGSPDLKVTVLGKVRTALLLAGTPLLLLARVPGVDQDLWGGLALVLVGAGCVLH
+VLAAVDYLVRAVRKARELRAAGVDPRDRRARPAQGA
+>KBS0714_MOLHKGIG_00646
+MSVIDVGLREGHEYRVRDTWLTVPNLITLARFALVPVFVWLTVDGRHLDAFVILAVLSGT
+DWVDGYVARRFDMISTVGRWLDPVADRLSLLVVAVTFVATGIAPLWLALAIAIPDLVLAA
+VCLWLFGGSPDLPVTVLGKVRTALLLVGTPLLLLARVPGVDGGPWSGVALALVGAGCLLH
+ILAAGDYLVRAVGKARGLRADGQDPREHPSRRG---
+>SA211_MHAAABBN_00383
+MRVIDVGLREGHEYRVRDTWLTVPNLITLARFALVPVFVWLTVDGRHLDAFVILAVLSGT
+DWVDGYVARRFDMISTVGRWLDPVADRLSLLVVAVTFVATGIAPLWLALAIAIPDLVLAA
+VCLWLFGGSPDLPVTVLGKVRTALLLVGTPLLLLARVPGVDGGPWSGVALALVGAGCLLH
+ILAAGDYLVRAVGKARGLRADGQDPREHPSRRG---
+>TT9_LFPAFLNI_00616
+MRVIDVGLREGHEYRVRDTWLTVPNLITLARFALVPVFVWLTVDGRHLDAFVILAVLSGT
+DWVDGYVARRFDMISTVGRWLDPVADRLSLLVVAVTFVATGIAPLWLALAIAIPDVVLAA
+VCLWLFGGSPDLPVTVLGKVRTALLLVGTPLLLLARVPGVDGGPWSGVALALVGAGCLLH
+ILAAGDYLVRAVGKARGLRADGQDPREHPSRRG---
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001903.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001903.fa
new file mode 100644
index 0000000000000000000000000000000000000000..94b02a91c604655877ed1e0567b459a8a917fa1b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001903.fa
@@ -0,0 +1,29 @@
+>AS2_ACLBLIBL_02322
+MTQSPVFVILATIALIALSALFVIMEFSLLAARRHRLEAEAGTSRAARAALRSVDELTIM
+LAGAQLGITLATFALGAITKPAVDAWLGPVLTGWGLPAAVAGTASFFLSLLLVTFLHLVV
+GEMAPKSWAIAHPEFAAKAVAGPARAYVWAVRPLLAFANAVANRLVAASGVTPTDRAAVG
+GHDADSIRQLVEHSASSGALDEQAHGQISGALDLQDATVGDLVSPPRDLVTVPADATAED
+VQAASVASGHLRILVRPADGPDDGVPGVVHVRDTMVLGPREPVAPLVQEALTLPVDTALH
+EASSAMRAAGRQLAVVTSEGRTVGVVTLTDLFRRVLPVSG
+>KBS0714_MOLHKGIG_01076
+-MHGPLIVMLVTTALIVLSAIFVIMEFSLLGARRHRLEAEAGRSRAARAALKGVDELTLM
+LAAAQLGITLCTFALGAITKPAVDAWLGPVLEDWGIPAAAAGTASFVLSLLAVTFLHLVI
+GEMAPKSWAIAHPETAAKAVAVPARAFVWTVRPLLLLANRLANRLVTLSGVTPVDQAAVG
+GYDAAAIRQLVEHSAAAGTLDRQNHEALAGALDLQTLTLGDLLPQGQHPVKVAPDADVEA
+VQNAAACSGHLRILVQPDHTPES-VPGVVHVRDTLTMEPSAPIQPLIQQALTLPSTTPLH
+EALASMRRNSRQLAAVTQDNRFTGVVTLTDVLRGVLPRAA
+>SA211_MHAAABBN_00795
+-MHGPLIVMLVTTALIVLSAIFVIMEFSLLGARRHRLEAEAGRSRAARAALKGVDELTLM
+LAAAQLGITLCTFALGAITKPAVDAWLGPVLEDWGIPAAAAGTASFVLSLLAVTFLHLVI
+GEMAPKSWAIAHPETAAKAVAVPARAFVWTVRPLLLLANRLANRLVTLSGVTPVDQAAVG
+GYDAAAIRQLVEHSAAAGTLDRQNHEALAGALDLQTLTLGDLLPQGQHPVKVAPDADVEA
+VQNAAACSGHLRILVQPDHTPES-VPGVVHVRDTLTMEPSAPIQPLIQQALTLPSTTPLH
+EALASMRRNSRQLAAVTQDNRFTGVVTLTDVLRGVLPRAA
+>TT9_LFPAFLNI_01025
+-MHGPLIVMLVTTALIVLSAIFVIMEFSLLGARRHRLEAEAGRSRAARAALKGVDELTLM
+LAAAQLGITLCTFALGAITKPAVDAWLGPVLEDWGIPAAAAGTASFVLSLLAVTFLHLVI
+GEMAPKSWAIAHPETAAKAVAVPARAFVWTVRPLLLLANRLANRLVTLSGVTPVDQAAVG
+GYDAAAIRQLVEHSAAAGTLDRQNHEALAGALDLQTLTLGDLLPQGQHPVKVAPDADVEA
+VQNAAACSGHLRILVQPDHTPES-VPGVVHVRDTLTMEPSAPIQPLIQQALTLPSTTPLH
+EALASMRRNSRQLAAVTQDNRFTGVVTLTDVLRGVLPRAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001904.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001904.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b301105a71c7996e6649be46fc24579fc9597fa8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001904.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_02323
+MDPILLLILGTVVILVIILANGFFVAQEFAYMSVDRVRLAAAAENGDEAARRALAVTRRT
+SFMLSGAQLGITVTGLLVGYVAEPMVGEALTQLLGGTAIPASVVIAVSTVGVLLVATVVQ
+MIVGELYPKNLAIANPDPLARALARPTQVYLALFGWLIWVFDKSAEALLRLLRIEPVHDV
+DSTATAQDLDRIVEDSRDSGTLPAELSVLLDRILDFPERDAEHAMVPRSQTDEVGPETTV
+AEVRALMAAAHTRYPVISADHQPLGVVHLQDVLALGHAPAPDLLVTDVMRPATVVPTVMP
+LPDVTRALDDADDQLACVIDEHGGFVGVLTLEDLAEELVGDLRDEHDDEAHEEIVPVVVG
+ESWALRGDVHLDELERAIGHPLPEGEAETVSGLLIESLGRLPEEGERVAVDLPEDTRDYG
+GDVLYDRRLEVDVRRVERHVPADVEVHLVETPRED-------------ETEEDPR
+>KBS0714_MOLHKGIG_01077
+MDPVLTLILGSLIILAIIAANGFFVAQEFAYMSVDRVRLQTAAKAGDRAAARALQVTRRT
+SFMLSGAQLGITVTGLMVGYVAEPMVGAALTELLGGTALPSEVVIAISTLGVLVVATLVQ
+MIIGELYPKNLAIANPEPLARALARPTQIYLGLFGWLIWVFDKAAEVLLKLLRIEPVHDV
+DSTASAEDLDRIALDSRASGSLPAEVSVLIDRVLDFPDQDVQHAMVPRSRVDEVQPQTSL
+AQVRDLMATGHTRYPVISNEHEPLGVVHLTDLLGETRM-APDTPVSALMRPALVLPTMMS
+LPDAARELDGSGQQMACIVDEFGGFVGVLTVEDLAEELVGELTDEHDLHPQEEITATGL-
+HSWVLSAEAHLDELERLVGHPLPVTEAESAAGLTIDALGRLPREGEVITIDLPEDPRDFG
+AEEVYDRHLQVEVLSIQRRVPARLRIHLIEVPRSDTAGSHAAHEAQPDATTDEER
+>SA211_MHAAABBN_00796
+MDPVLTLILGSLIILAIIAANGFFVAQEFAYMSVDRVRLQTAAKAGDRAAARALQVTRRT
+SFMLSGAQLGITVTGLMVGYVAEPMVGAALTELLGGTALPSEVVIAISTLGVLVVATLVQ
+MIIGELYPKNLAIANPEPLARALARPTQIYLGLFGWLIWVFDKAAEVLLKLLRIEPVHDV
+DSTASAEDLDRIALDSRASGSLPAEVSVLIDRVLDFPDQDVQHAMVPRSRVDEVQPQTSL
+AQVRDLMATGHTRYPVISNEHEPLGVVHLTDLLGETRM-APDTPVSALMRPALVLPTMMS
+LPDAARELDGSGQQMACIVDEFGGFVGVLTVEDLAEELVGELTDEHDLHPQEEITATGL-
+HSWVLSAEAHLDELERLVGHPLPVTEAESAAGLTIDALGRLPREGEVITIDLPEDPRDFG
+AEEVYDRHLQVEVLSIQRRVPARLRIHLIEVPRSDTAGSHAAHEAQPDATTDEER
+>TT9_LFPAFLNI_01026
+MDPVLTLILGSLIILAIIAANGFFVAQEFAYMSVDRVRLQTAAKAGDRAAARALQVTRRT
+SFMLSGAQLGITVTGLMVGYVAEPMVGAALTELLGGTALPSEVVIAISTLGVLVVATLVQ
+MIIGELYPKNLAIANPEPLARALARPTQIYLGLFGWLIWVFDKAAEVLLKLLRIEPVHDV
+DSTASAEDLDRIALDSRASGSLPAEVSVLIDRVLDFPDQDVQHAMVPRSRVDEVQPQTSL
+AQVRDLMATGHTRYPVISNEHEPLGVVHLTDLLGETRM-APDTPVSALMRPALVLPTMMS
+LPDAARELDGSGQQMACIVDEFGGFVGVLTVEDLAEELVGELTDEHDLHPQEEITATGL-
+HSWVLSAEAHLDELERLVGHPLPVTEAESAAGLTIDALGRLPREGEVITIDLPEDPRDFG
+AEEVYDRHLQVEVLSIQRRVPARLRIHLIEVPRSDTAGSHAAHEAQPDATTDEER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001912.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001912.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9cba597b44f35a7450f1eebf9ad99bbce34d7354
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001912.fa
@@ -0,0 +1,37 @@
+>AS2_ACLBLIBL_02416
+MAVRHQTRGPVDTDPRYRALLEARAAQERQAARGTAAWSRDDATGLPREPLRIPELILGA
+LLAMEAFGVRLGPLGVPLNEAAMLLLLFLALCRRSRRDTSALGLSAVLAGAVMVFLAVVS
+VNQGIPDMEWLRRWVRIAALVGLVGCIAGGRLDLRSVLTGLLAAMAANVPLFYAGVVPTP
+YGSFLTGFLADKNVAGLYYAAMPVLALAVVRSRRWKLAILLAAAVCLFLTGSRTSMAGFG
+VALVWLAVTPRLAAGLRVVLLVVLGWAVGFAEENLSRLEVFGDRTGTDWLRGTIQAATEA
+KAATTPWHGRGLTEAYVTIGRDTWLYHDSYAGLFTEGGVVLLVAVLGAYAFFGLRLFSTR
+LRTPSRVAVEAAAAVVFVTATQLGEVFITIPGMLIVAAGVSLWLRERDAPLESEVRERRR
+RQVL-AAARRGSTPESSADLAAPGSA
+>KD337_NAFOICDF_02298
+MP-PHLPSGPALQDPRYQAVLAERGRREAATARGVSVLTAEDAAG-PRTSLRVPELLLGF
+LLAMEAYTLPAGGVPVPLNEAAMMVLLGLALCRRAKRRASALGVAALLAVLVGVYLAAVS
+LAMGVPDAVWLRRLVRMAALTALVGCFAARRVDLRSVLTGLLAAMAVNVPLFYAGLVPAP
+YQGFLTGFLADKNVAGLYYAAVPVLALTFVRRPGVRLLLLSASGLCVFLTGSRTSLAGFA
+CALVWVVLTPRMGPVLRVALLALLAWAVGFAEENLARVGVYSDREGTDWFRSVIQTATGV
+KVEATPWTGQGLAQSFVELDAGRFLFHNSYAALYVEGGVVLTAAMLTAYAVYGLRLGATR
+LRTPSRVAVEAAAVVVLVTATQLGEVFVSIPSMLILAAGATLAITEADAPLDAQARARRE
+ERTLRQAAARGH--------------
+>SA211_MHAAABBN_00257
+MTVGHGAHGPRHSDPRYVALQTEREKHARAAARGTSVWSADQDAAVPREPLRIPELLLGA
+LLAMEAFSVPLGPVALPLNEAGMLLLLALALCRRSRRDVSALGLTAVLAAAVLLFLAIVS
+VSQGIPDLEWLRRWVRMAALVGLVGCIAGGRLSLRSLAVGLGAAMALNVPLFYAGLVPAP
+YGSFLTGILADKNVAGLYYAAMPVLALALVRTRRWKLILLVAAAVCVVLTGSRTSMAGFA
+CAVLWLWLTPRMGAGLRLVLLAVLAWAVAFAEENLARIAFFADRTGTDWLRSNIQAETAV
+RVAETPWYGRGLTTAYVDFGGATWHYHNSYAGLYTEGGVVLLLAVLGAYAFFGLRLFSAR
+LRTPSRVAVEAAAVVVFVSATQLGEVFITIPSMLVVAAGVTLWLDERDAPLESEVLERRR
+RRVL-AAARRGQHAPSSGGHAVPDL-
+>TT9_LFPAFLNI_00536
+MTVGHGAHGPRHSDPRYVALQAEREKHARAAARGTSVWSAGQDAAAPREPLRIPELLLGA
+LLAMEAFSLPLGPVALPLNEAGMLLLLALALCRRSRRDVSALGLTAVLAAAVLLFLAVVS
+VSQGIPDLEWLRRWVRMAALVGLVGCIAGGRLSLRSLAVGLGAAMALNVPLFYAGLVPAP
+YGSFLTGVLADKNVAGLYYAAMPVLALALVRTRRWKLILLVAAAVCVVLTGSRTSMAGFA
+CAVLWLWLTPRMGAGLRLVLLAVLAWAVAFAEENLARIAFFADRTGTDWLRSNIQAETAV
+RVAETPWYGRGLTTAYVDFGGATWHYHNSYAGLYTEGGVVLLLAVLGAYAFFGLRLFSAR
+LRTPSRVAVEAAAVVVFVSATQLGEVFITIPSMLVVAAGVTLWLDERDAPLESEVLERRR
+RRVL-AAARRGQHAPSSGGHAVPDL-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001913.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001913.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0bf8deecd8319fc082240b91931c6583f9dbedcc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001913.fa
@@ -0,0 +1,21 @@
+>AS2_ACLBLIBL_02418
+MQQNTSSLSRRKVTTGIAWSVPAVVAVAAAPFAAASPS-CITSSAGRVVKYPGNSSGYDL
+KQAYGFTVTVTNPTRGKLRVTAKSVSLILDKKVLR-GSLLIYTADPCAGGVPVDPNSDLL
+VLEPGESQTLFLVANNTGNSANTSGCIYAKLGVKLVDGSVPVANLCDEHDV-VEACFDET
+SPTATC
+>KD337_NAFOICDF_02300
+MQTTPKTVNRRTVSAGIAWSVPAVAAVAAAPFAAASPTGCVNVTSGTAEKFPGGGHPDGI
+KQAYGFTITITNTSPTPVYVNPGTVTVVFGGHTTRNGEARLYTASPCRGGKRLAAMDPEL
+LLQPGQSKTYYYVVNNTGNSAQESGCVKGKLQLALPKGAPEGADLCNGGIVEFKNCFETT
+PPTAGC
+>SA211_MHAAABBN_00255
+MQKNTSTLSRRKVTAGIAWSVPAVAAVAAAPFAAASPTGCAAVTTGTAEKFPGGGHPDGI
+KQAYGFTITITNTSPTPVYVDPGTVTVEFKGHPTRSGEALLYTASPCEGGTRLAAMDPEL
+LLQPGESETYYYVVNQTGNSAQESGCVKGKLQLALPKGAPEGADLCNDGVVDFSNCFDTT
+PPTAGC
+>TT9_LFPAFLNI_00534
+MQKNTSTLSRRKVTAGIAWSVPAVAAVAAAPFAAASPTGCAAVTTGTAEKFPGGGHPDGI
+KQAYGFTITITNTSPTPVYVDPGTVTVVFGGHTTRNGEARLYTANPCRGGKRLAAMDPAL
+LLQSGQSKTYYYVVNNTGNSANESGCVEGKLQLALPKGAPEGADLCNDGVVEFSNCFETT
+PPTARC
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001921.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001921.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4bf2d72c9e9eb01af88d5ee3fe2b3d10f26861ba
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001921.fa
@@ -0,0 +1,29 @@
+>KBS0714_MOLHKGIG_00118
+-------MIAHRGASAAFPEHTRAAMLHALAVGADGLECDVQLTRDREVVCWHDPTVDRT
+SDGRGAVADHTLDRLRGLDVVSWHARRPGAEPATTTAP-PAVYGGAGEQVLTLADLLAIA
+AAADRPLRLAVELKHPSPFGHELEERVLRELLRAGWDPETGRLGQVQVSLMSFHPDALRH
+VAPLAGTDPLCPLMDLMPTELPTRLARGPLSRAAVRAAARQSLAGSEALVWRGRAGMAGP
+SVAYVREHLADVKAWLAAGRRLRVWTVDEREDADSLLAQGVQELTTNRPEDVLRWVRERA
+AARRERMPTGA--------
+>KD337_NAFOICDF_00200
+MTGVLPLVIAHRGASAAFPEHTRAAMLHALAVGADGIECDVQLTRDRQVVLWHDPTVDRT
+SDGRGPLADHTLAQLRALDVVSWHQGMGGDAPGDAAGRVPAVYGRRDEQVLTLADLLRMV
+LAADRPLRLAVELKHPSPFGHELEERVLRELVAAGWDAETGLMGQVRVSLMSLHPGALQY
+LAPLTGPDALCPLIDLVPDEIPSRLARGPLSRAAVRATVRQSLADAETMVWRGRAGLAGP
+SVAYVRSHLADVKAWLASGRRLRVWTVDEREDALFLAAQGVQELTTNRPADVLRWVTQAA
+TSASPGAISGRDMPSPAAR
+>SA211_MHAAABBN_02131
+MPA---LVIAHRGASAAFPEHTRAAMLHALAVGADGLECDVQLTRDREVVCWHDPTVDRT
+SDGRGAVADHTLDRLRGLDVVSWHARRPGAEPATTTAP-PAAYGGAGEQVLTLADLLAIA
+TAADRPLRLAVELKHPSPFGHELEERVLRELLRAGWDPETGRVGQVQVSLMSFHPDALRH
+VAPLAGTDPLCPLMDLMPTELPTRLARGPLSRAAVRAAARQSLAGSEALVWRGRAGLAGP
+SVAYVREHLADVKAWLAAGRRLRVWTVDEREDAEFLLAQGVQELTTNRPEDVLRWVRERA
+AARRERVPTGA--------
+>TT9_LFPAFLNI_00123
+MPA---LVIAHRGASAAFPEHTRAAMLHALAVGADGLECDVQLTRDREVVCWHDPTVDRT
+SDGRGAVADHTLDRLRGLDVVSWHARRPGAEPATTTAP-PAAYGGAGEQVLTLADLLAIA
+TAADRPLRLAVELKHPSPFGHELEERVLRELLRAGWDPETGRVGQVQVSLMSFHPDALRH
+VAPLAGTDPLCPLMDLMPTELPTRLARGPLSRAAVRAAARQSLAGSEALVWRGRAGLAGP
+SVAYVREHLADVKAWLAAGRRLRVWTVDEREDAEFLLAQGVQELTTNRPEDVLRWVRERA
+AARRERVPTGA--------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001924.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001924.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a9df05c3a1556133317d5ad67cddad0e17bdaa52
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001924.fa
@@ -0,0 +1,32 @@
+>KBS0714_MOLHKGIG_00247
+MSEKTAPTETAPVIPHFVHGERREGASGRHSDVYHPATGRVAGRVPLASAEEIDAALASAEEGFAAWSTLNPQRRGRILL
+RWVDLINENMDELATVLAQEHGKTFPDAKGDIQRGIEVVEFAAGAPHLLKGEFTADAGTGIDVHSMRQPLGVAVGITPFN
+FPAMIPLWKAGIALAAGNAFVLKPSERDPSVPVRLAELALEAGMPAGALNVVHGDKAAVDALIEDPRVKAVGFVGSTPIA
+QSIYAHAGRMGKRAQCFGGAKNHAVVMPDADLEMTADALVGAAFGSAGERCMAISVAVPVGEETADRLIALLRERVKDLR
+VGPSLEASSDFGPVVSKDAKERIEGYIAAGVEAGADLVEDGRGVVVEGHEDGFYVGATLFDRVTPEMSIYREEIFGPVLS
+VVRAKDYEEALTLVNEHEFGNGVAIFTRDGDAARDFSTRVDTGMVGVNVPIPVPIAYYTFGGWKASGFGDLNQHGTDGLK
+FYTKTKTVTTRWPSGVR-------EGASFVMPAGS
+>KD337_NAFOICDF_00091
+MSQQ---SQTQQTIPHFVHGARTGTDAARTSDVFDPSTGQVQARVALASPEEVTAAVDSAAEAFRTWSAMNPQRRGRVLL
+TWVDLINANADELAETLSREHGKTFEDAKGDIQRGVEVVEFAAGAPHLLKGEFSTSAGTGIDVHSLRQPLGVVAGITPFN
+FPAMIPLWKAGIALAAGNTFVLKPSERDPSVPVRLAELALEAGLPAGALNVVHGDKAAVDALIDDPRVKAVGFVGSTPIA
+QSIYEHAARRGKRAQCFGGAKNHAVIMPDADLEMAADALIGAAFGSAGERCMAISVAVPVGEETADRLVALLRERMASLT
+VGPSLDPSSDFGPVVSAQAKERIESLIQAGVDEGAELVVDGRGVVVEGHEGGFYVGATLFDRVRKGMRIHAEEVFGPVLC
+VVRAKDYEEALSLPSDHEYGNGVAIFTRDGDTARDFSTRVECGMVGVNVPIPVPIAYYTFGGWKASGFGDLNQHGTDGLK
+FYTKTKTVTTRWPSGPRQGGAAASEGASFVMPAGS
+>SA211_MHAAABBN_02259
+MSQKTAPTETAPVIPHFVHGERREGASGRHGDVYHPATGGVAGRVPLASAEEIDAALASAEEGFAAWSRLNPQRRGRILL
+RWVDLINENMDELATVLAQEHGKTFPDAKGDIQRGIEVVEFAAGAPHLLKGEFTADAGTGIDVHSIRQPLGVAVGITPFN
+FPAMIPLWKAGIALAAGNAFVLKPSERDPSVPVRLAELALEAGMPAGALNVVHGDKAAVDALIEDPRVKAVGFVGSTPIA
+QSIYAHAARMGKRAQCFGGAKNHAVIMPDADLEMAADALVGAAFGSAGERCMAISVAVPVGEETADRLIALLRERIKGLT
+VGPSLEASSDFGPVVSKDAKERIEGYIAAGVEAGAELVEDGRGVVVEGHEDGFYVGATLFDRVTPEMSIYREEIFGPVLS
+VVRAKDYEEALTLVNEHEFGNGVAIFTRDGDAARDFSTRVDTGMVGVNVPIPVPIAYYTFGGWKASGFGDLNQHGTDGLK
+FYTKTKTVTTRWPSGVR-------EGASFVMPAGS
+>TT9_LFPAFLNI_00247
+MSQKTAPTETAPVIPHFVHGEQREGASGRHSDVYHPATGSVAGRVPLASAEEIDAALASAEEGFAAWSTLNPQRRGRILL
+RWVDLINENMDELATVLAQEHGKTVPDAKGDIQRGIEVVEFAAGAPHLLKGEFTADAGTGIDVHSIRQPLGVAVGITPFN
+FPAMIPLWKAGIALAAGNAFVLKPSERDPSVPVRLAELALEAGMPAGALNVVHGDKTAVDALIEDPRVKAVGFVGSTPIA
+QSIYAHAARMGKRAQCFGGAKNHAVIMPDADLEMAADALVGAAFGSAGERCMAISVAVPVGEETADRLIALLRERVKDLR
+VGPSLEASSDFGPVVSKDAKERIEGYIAAGVEAGADLVEDGRGVVVEGHEDGFYVGATLFDRVTPEMSIYREEIFGPVLS
+VVRAKDYEEALTLVNEHEFGNGVAIFTRDGDAARDFSTRVDTGMVGVNVPIPVPIAYYTFGGWKASGFGDLNQHGTDGLK
+FYTKTKTVTTRWPSGVR-------EGASFVMPAGS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001928.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001928.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bd629f16573685ff7dbf23d27884278493772fa3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001928.fa
@@ -0,0 +1,29 @@
+>KBS0714_MOLHKGIG_00463
+MTDQTPQAQPAAGTA-LPPSTGLRLMAVHAHPDDESSKGAGTMAAYAAAGAEVMVVTCTG
+GEAGTLLNPSFGDTTRADRDIAAVRREEMAEAARILGIRHAWLGFLDSGLPEGDPLPALP
+ANCFAEVPLQDAATPLISLVRRFRPHVLISYDEVGGYPHPDHLQAHAVTMEAYRAAGLAD
+EYPEAGPAWEVSKVYYDCGFNPRKFRTMAAVAEADGEDVPFARRLMMFDAMDAMREVLRR
+REAGEDVPDPEVIPPWVTADHDVTTQVDVTGFLDERDAALRAHRTQIDPDGMFFDAPHDL
+QRRAWPWEDFALIDSRVPSELPEHDLFAGLR
+>KD337_NAFOICDF_02368
+MSEPSI---PAPTTASVPDSTGLRLLAVHAHPDDESSKGAATMAAYAAAGAEVLVVTCTG
+GEAGSVLNPSYAHPVRAERDIAGVRHAEMAAAARALGVRHRWLGFLDSGLPEGDPLPALP
+DHCFAEVPLETAAAPLVAVVRRFRPHVILSYDEAGGYPHPDHIRAHEVTRVAWERAGDAD
+AYPGTGPAWEPLKLYYDRAFHPAKYQALHEGFLAAGEESPFTDRLEMHARMEAMREVLRR
+REEGEEVPDPEHLPPFVPPVHEVTTQIPVQDFLDERDAALRAHATQVDPEGMFFAAPNEL
+QRSTWPWEDYALIESRVRTVPPETDLFAGVR
+>SA211_MHAAABBN_00181
+MTDQTPQAQPAAGTA-LPPSTGLRLMAVHAHPDDESSKGAGTMAAYAAAGAEVMVVTCTG
+GEAGTLLNPSFGDTTRADRDIAAVRREEMAEAAGILGIRHAWLGFLDSGLPEGDPLPALP
+ANCFAEVPLRDAAAPLISLVRRFRPHVLISYDEVGGYPHPDHLQAHAVTMEAYRAAGLAD
+EYPEAGPAWEVSKVYYDCGFNPRKFRTMAAVAEADGEDVPFARRLMMFDAMDAMREVLRR
+REAGEDVPDPEVIPPWVTADHDVTTQVDVTGFLDERDAALRAHRTQIDPDGMFFDAPHDL
+QRRAWPWEDFALIDSRVPSELPEHDLFAGLR
+>TT9_LFPAFLNI_00463
+MTDQTPQAQPAAGTA-LPPSTGLRLMAVHAHPDDESSKGAGTMAAYAAAGAEVMVVTCTG
+GEAGTLLNPSFGDTTRADRDIAAVRREEMAEAARILGVRHAWLGFLDSGLPEGDPLPALP
+ANCFAEVPLRDAATPLISLVRRFRPHVLISYDEVGGYPHPDHLQAHAVTMEAYRAAGLAD
+EYPEAGPAWEVSKVYYDCGFNPRKFRTMAAVAEADGEDVPFARRLMMFDAMDAMREVLRR
+REAGEDVPDPEVIPPWVTADHDVTTQVDVTGFLDERDAALRAHRTQIDPDGMFFDAPHDL
+QRRAWPWEDFALIDSRVPSELPEHDLFAGLR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001931.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001931.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a9b25e39bece930b776a6819a4994ecf0f251b19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001931.fa
@@ -0,0 +1,21 @@
+>KBS0714_MOLHKGIG_00569
+MDSRVNSGGVVGKVDNLTCLAGLVTTEDPARVRALRGTVLAVALLNGAYLVVEIILALGI
+GSVALVADSVDFFEDFAVNLLIFVALGWTAARQAVIGKVMAGIIVLPAVAALVMAATKIG
+DPDPPAAGVLLGAAVGSLLVNLVCVALLARVRTDGGSLTRAAWLAARNDLVAGAVLIALS
+GITVLTASGWADIIVGVLLVLLNGSAAKEIWEAATEEHLAAQALAGEVDDD
+>KD337_NAFOICDF_02259
+MDAMTETS---------------HPRPDPARVRALRGTVLAVSLLNLAYMLVEIGVALGI
+GSVSLVADSVDFFEDFAVNMLIVIALGWPLARRARVGKVMAGIIVLPAIAALAMAAVKVG
+DPEPPATGPLFWTGVGSLLVNLVCVGLLARFRADGGSLTRAAWLAARNDLIAGIVLIALA
+GATALTASGWADIIVGVLLVVLNGGAAKEVWQAATEERLAAQALAGEFDDD
+>SA211_MHAAABBN_00293
+MNR--------------------AAVADRRRTRTLRGTVLAVALLNGAYLVVEIILAVGI
+GSVALVADSVDFFEDFAVNLLIFVALGWTAARQAVIGKVMAGIIVLPAVAALVMAATKIG
+DPEPPAAGVLLGAAVGSLLVNIVCVVLLARVRVDGGSLTRAAWLAARNDLVAGVVLIALS
+GITVLTASGWADIIVGVLLVLLNGSAAKEIWEAATEEHLAAQALAGEVDDD
+>TT9_LFPAFLNI_00571
+MNE--------------------VPEADRRRTRALRGTVLAVALLNGAYLVVEIILALGI
+GSVALVADSVDFFEDFAVNLLIFVALGWTAARQAVIGKVMAGIIVLPAVAALVMAATKVG
+DPDPPAAGVLLGVAVGSILVNLVCVALLARVRTDGGSLTRAAWLAARNDLVAGVLLIALS
+GITVLTASGWADIIVGVLLVLLNGSAAKEIWEAATEEHLAAQALAGEVDDD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001933.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001933.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0d157e05ddaa00e6f4977c2c79c41e89262f08c3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001933.fa
@@ -0,0 +1,25 @@
+>KBS0714_MOLHKGIG_00640
+M------------ARPGDPGRECRRGLDVRIGTSGWIYKHGRGTFYPQGLRIADQLDHCT
+ERDRVSRLRALPQRGP--------------------------------------------
+---------GPAL-----------------------------------------------
+------------RRIVLRRRAR-------------------------PWVGRLRELTGA-
+------DAAGARPAHVSFYNDNHGHAAFNALTLRRMAEAEA
+>KD337_NAFOICDF_02185
+--------------------------MDVRIGTSGWTYKHWRGTFYPQGLRIADQLDHYT
+ERFRTVELNGSHYRWPADSTVEAWRERLPAGFEMAVKASRYLTHYRKLNEPQDWVERIVH
+TLDLLGDHAGPLLLQLPANLHRDDDRLAGFLGLLPERVRVAVEVQHESWLDEDVFDLLDR
+HGAGFVVSVIAGREPVLRATGRLAYVRFHNADPDWRYGGSFSDAELAPWVGRLRVLTGAD
+NGGPAGDAAGARPAYVYFNNDNHGHAGFNALTLRRMAETGA
+>SA211_MHAAABBN_00377
+MISGTLRLPRRVKARPGDPGRGYRRGMDVRIGTSGWTYRHWRGTFYPQGLRIADQLDHYT
+ERFRTVELNGSHYRWPADSTVEAWRERLPAGFEMAVKASRYLTHYRKLNEPQDWVERIVH
+TLDLLGDHAGPLLLQLPAHLHRDDGRLAGFLGLLPERVRVAVEVQHESWLDEDVFDLLDR
+HGAGFVVSVIAGREPVLRATGRLAYVRFHNADPDWRYGGSFSDAELAPWVGRLRELTGAD
+DGGPAGDAAGARPAYVYFNNDNHGHAAFNALTLRRMAETEA
+>TT9_LFPAFLNI_00609
+MISGTLRLPRRIKARPGDPGRGYRRGMDVRIGTSGWTYKHWRGTFYPQGLRIADQLDHYT
+ERFGTVELNGSHYRWPADSTVEAWRERLPAGFEMAVKASRYLTHYRKLDEPQDWVQRIVH
+TLDLLGDHAGPLLLQLPAHLHRDDDRLAGFLGLLPERVRVAVEVQHESWLDKDVFDLLDR
+HGAGFVVSVIAGREPVLRATGRLAYVRFHNADPDWRYGGSFSDAELAPWVGRLRELTGA-
+------DAAGVRPTYVYFNNDNHGHAAFNALTLRRMAEAEA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001934.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001934.fa
new file mode 100644
index 0000000000000000000000000000000000000000..737f851f0fe7541d16d41981fe589976176c5f57
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001934.fa
@@ -0,0 +1,13 @@
+>KBS0714_MOLHKGIG_00678
+MTSRTVVRTCIGCRSRADQQELVRVALDSSTEPPSVVWDPERRRPGRGAWLHPGEDCLHL
+ALRRRAFGRAFRSAVDADALGRTAEAPADRPTDEGGSEI
+>KD337_NAFOICDF_02146
+MSPRTVVRTCVGCRSQADQQELMRVALEPGTTPPTVVWDPLRRRPGRGAWVHPGPECLQL
+ALRRRAFHRAFRGQVDPDGLEAGTRASAARPTDEGGSEI
+>SA211_MHAAABBN_00415
+MTSRTVVRTCIGCRSRADQQELVRVALDSSTEPPSVVWDPERRRPGRGAWLHPGEDCLLL
+ALRRRAFGRAFRSAVDADALGRTAEAPADRPTDEGGSEI
+>TT9_LFPAFLNI_00648
+MTSRTVVRTCIGCRSRADRQELVRVALDSSTEPPSVVWDPERRRPGRGAWLHPGEDCLHL
+ALRRRAFGRAFRSAVDADALGRTAEAPADRPTDEGGSEI
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001936.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001936.fa
new file mode 100644
index 0000000000000000000000000000000000000000..72091cfd23d1007034a533b71592339af117d127
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001936.fa
@@ -0,0 +1,36 @@
+>KBS0714_MOLHKGIG_00858
+MRARETMAHVPHTDQNAPD----LGVDTAVRRVREHLAALELPFETVTAGQDRAERERTLHQIDDYVLPRLDSLDAPLLA
+VVGGSTGAGKSTLVNALVGHEVSRSSALRPTTRQPLLLHNPADAHWFTGPRVLPDLARVSVHRDAAAGPVEPDQSAMDTV
+ALVAEPALPSGIALVDAPDIDSVADQNRALARQLLEAADLWIFTTTAHRYADAVPWQLLDEAAARDITVAVVLGRVPEGA
+AEDITPDLRRMLTERGLADARIHVIPETRFDERGLLPQEHVAGLRAWLETLAADAQARGAVARRTVDGVLGQLAARVADL
+ARAEEEQRHAADLLARIVGDSTDQAVGRVREATSDGTLLRGEVLSRWQDFVGTGEFFRGVETTIGRLRDRLGALVRGRPA
+PPEEVETALETGLHAVMVEAAAAAAEQIERRWASEPAGRALVAGRDLGALAPDTSARAADVVRDWQSDVLALVQEEGAGK
+RTRARLAATGVNGAAVALMIISFASTGGLAGIEVGIAGGAAVVGQKLLESIFGEDAVRRMARRADELLEHRVRAFLETVL
+ADRFLPLLHLEREPQATEELRALVPVLRRGVAAGVDGPTGPEHVPSA-----AEAG--EEPR
+>KD337_NAFOICDF_01971
+---------MESTDLTSPSAAAPIGVDTAVRRVRAHLDALELPFATATVGADRAEAERTRHQIDDYVLPRLDSLDAPLLA
+VVGGSTGAGKSTLVNALVGHEVSRSSALRPTTRQPLLLHHPDDAHWFTGSRVLPDLARVTVHRSASAGPVEPDSQAMDTV
+ALVAEPSLPQGIAIVDAPDIDSVADQNRALARQLLEAADLWIFTTTAHRYADAVPWELLDQAAARDITVAVVLGRVPQGA
+GEAIAPDLRRMLVEHGLPEAPIHVIPETRFGEDGLLPAEHVADLRAWLTSLAEDAQARSAVARRTVDGVLTQLAVRVEAL
+AEAEHGQQETAARLAGIVADSTELALETVHRATSDGTLLRGEVLARWQDFVGTGEFFRGLESAVGRVRDRLGALVRGRPA
+PPEEVEDALETGLHAVLVEAVASAVEQVERRWRSEPAGRALVEGRDLGSLPAGTSERAATLVREWQGDVLALIQEEGAGR
+RTRARLAAFGVNGAAVALMVISFASTAGLSGIELGIAGGAAAVGQKLLESIFGEDAVRRMARRASELLDERVRVLLEDVV
+GGRFLPLLRLERDAEDTAALRALVPTLRRGVAAGVDGPQ-PDAAPDAPRREAADAAIEEDAR
+>SA211_MHAAABBN_00580
+------MAHVPHTDQNAPD----LGVDTAVRRVREHLAALELPFETVTAGQDRAERERTLHQIDDYVLPRLDSLDAPLLA
+VVGGSTGAGKSTLVNALVGHEVSRSSALRPTTRQPLLLHNPADTHWFTGPRVLPDLARVSVHRDAAAGPVEPDQSAMDTV
+ALVAEPALPSGIALVDAPDIDSVADQNRALARQLLEAADLWIFTTTAHRYADAVPWQLLDEAADRDITVAVVLGRVPEGA
+AEDITPDLRRMLTERGLADARIHVIPETRFDERGLLPQEHVAGLRAWLETLAADAQARGAVARRTVDGVLGQLAARVADL
+ARAEEEQRHAADLLARIVGDSTDQAVGRVREATSDGTLLRGEVLSRWQDFVGTGEFFRGVETTIGRLRDRLGALVRGRPA
+PPEEVETALETGLHAVMVEAAAAAAEQIERRWASEPAGRALVAGRDLGALTPDASARAADVVRDWQSDVLALIQEEGAGK
+RTRARLAATGVNGAAVALMIISFASTGGLAGIEVGIAGGAAVVGQKLLESIFGEDAVRRMARRADELLELRVRAFLETVL
+ADRFLPLLHLEREPQATEELRALVPVLRRGVAAGVDGPTEPEHAPSA-----AEAG--EESR
+>TT9_LFPAFLNI_00817
+MRARETMAHVPHTDQNAPD----LGVDTAVRRVREHLAALELPFETVTAGQDRAERERTLHQIDDYVLPRLDSLDAPLLA
+VVGGSTGAGKSTLVNALVGHEVSRSSALRPTTRQPLLLHNPADAHWFTGPRVLPDLARVSVHRDAAAGPVEPDQSAMDTV
+ALVAEPALPSGIALVDAPDIDSVADQNRALARQLLEAADLWIFTTTAHRYADAVPWQLLDEAAARDITVAVVLGRVPEGA
+AEDITPDLRRMLTERGLADARIHVIPETRFDERGLLPQEHVAGLRAWLETLAADAQARGAVARRTVDGVLGQLAARVADL
+ARAEEEQRHAADLLARIVGDSTDQAVGRVREATSDGTLLRGEVLSRWQDFVGTGEFFRGVETTIGRLRDRLGALVRGRPA
+PPEEVESALETGLHAVMVEAAAAAAEQIERRWASEPAGRALVAGRDLGALTPDTSARAADVVRDWQTDVLALIQEEGAGK
+RTRARLAATGVNGAAVALMIISFASTGGLAGIEVGIAGGAAVVGQKLLESIFGEDAVRRMARRADELLERRVRAFLETVL
+ADRFLPLLHLEREPQATEELRALVPVLRRGVAAGVDGPTGPEHAPSA-----AEAG--EEPR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001943.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001943.fa
new file mode 100644
index 0000000000000000000000000000000000000000..822f05c36b8dabc3c40ae7f632c260eed9087759
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001943.fa
@@ -0,0 +1,21 @@
+>KBS0714_MOLHKGIG_01160
+MNPVTSTARDGRSVRWDRHRAERRLELVRAARSAVHALGAHASMEEIASHAGTSKTVYYR
+YFGDREGLRLAVSERVTAHMERRLLEVADEPVSEPEALRRMVEVYLTVAATSPEVYAFAV
+APSPAA-AEAPVLGPFLERVYAMLESGLARGMAARGHAPAPADPLALWPRAAVGLVRAAA
+ETWLRTPAAGRIPVEAMARAIADWLLTGLIGAAPGAALEPAAADAVRARPHSRT--GASS
+>KD337_NAFOICDF_01627
+M-------------------------LVRAARAAVHELGPTASMDEIAAHAGTSKSVFYR
+YFGDRAGLRQAVAERVTASMERRLREAAVDAPDGVSALHRMVAECLSVAASSPAVYAFAV
+TQGGAADGTGPDLGPFFERIAALLAEGLARTLPAADAGPGTT--LVLWPRVAVGTVRAAV
+EAWLATEESVRPDPVRTAHDVAGWLLAGLRSADPSAS--PAA------DTHTPTQQGEPS
+>SA211_MHAAABBN_00879
+MNPVTSTARDGRSVRWDRHRAERRLELVRAARSAVHALGAHASMEEIASHAGTSKTVYYR
+YFGDREGLRLAVSERVTAHMERRLLEVADEPVSEPEALRRMVEVYLTVAATSPEVYAFAV
+APSPAA-AEAPVLGPFLERVYAMLESGLARGMAARGHAPAPADPLALWPRAAVGLVRAAA
+ETWLRTPAAGRIPVEAMARAIADWLLTGLIGAAPGAALEPAAADADRARPHSRT--GASS
+>TT9_LFPAFLNI_01110
+MNPVTSTARDGRSVRWDRHRAERRLELVRAARSAVHALGAHASMEEIASHAGTSKTVYYR
+YFGDREGLRLAVSERVTAHMERRLLEVADEPVSEPEALRRMVEVYLTVAATSPEVYAFAV
+APSPAA-AEAPVLGPFLERVYAMLESGLARGMAARGHAPAPADPLALWPRAAVGLVRAAA
+ETWLRTPAAGRIPVEAMARAIADWLLTGLIGAAPGAALEPAAADADRARPHSRT--GASS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001944.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001944.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a52a1c21f7fac421a92ccc7c05dd09daea04429
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001944.fa
@@ -0,0 +1,25 @@
+>KBS0714_MOLHKGIG_01212
+MSGSGSSRRGARHGGYAANSFRTEAIVLRTHRLGEADRIIEALTPEHGLVRAVAKGVRKT
+SSRLGSVVEPFMHSTLQLARGRGELHIVSQAQLLHPYATMLAADYDAYTVAGALAEAVER
+VPAVDDDGRRAQYRLFHGALAALARGAHDPRLILHSFLLRALAQAGWAPTFDRCARCGAP
+GPHTALHVGLGGAVCPACRPPGAAHPAPETFDLLSALAAGGWATADASGAPARREAAGIV
+AAYLQFHAERRLVSLSVLDQDLGLPAPRVERRP
+>KD337_NAFOICDF_01573
+MS-------GARHGGYSANSFRTEAIVLRTHRLGEADRIVEAITPEHGVLRCVAKGVRKS
+SSRFGSVVEPFMHSTLQVARGRGELHTITQAQLLHPYATAVAADYEAFAVAAALAEGVER
+IPALDADGRRAQYLLFHGALAALARRAHDPRMILHSFLLRTLTQAGWAPTFDRCARCGAP
+GPHTAVNVALGGAVCAEHRPPGSASPAPETFALLTALTAGDWAVVDTAGPLARREAAGIV
+SAYLQFHAERRLVALSVLDQEIAPPAPRAERSA
+>SA211_MHAAABBN_00931
+MSGSGSSRRGARHGGYAANSFRTEAIVLRTHRLGEADRIIEALTPEHGLVRAMAKGVRKT
+SSRLGSVVEPFMHSTLQLARGRGELHTVSQAQLLHPYATMLAADYDAYTVAGALAEAVER
+VPAVDDDGRRAQYRLFHGALAALARGAHNPRLILHSFLLRALAQAGWAPTFDRCARCGAP
+GPHTALHVGLGGAVCPECRPPGAAHPAPETFDLLSALAAGDWATADTSGAPARREAAGIV
+AAYLQFHAERRLVSLSVLDQDLGLPAPRVERRP
+>TT9_LFPAFLNI_01169
+MSASGSSRRGARHGGYAANSFRTEAIVLRTHRLGEADRIIEALTPEHGLVRAVAKGVRKT
+SSRLGSVVEPFMHSTLQLARGRGELHTVSQAQLLHPYATMLAADYDAYTVAGALAEAVER
+VPAVDDDGRRAQYRLFHGALAALARGAHDPRLILHSFLLRALAQAGWAPTFDRCARCGAP
+GPHTALHVGLGGAVCPECRPPGAAHPAPETFDLLSALAAGDWATADASGAPARREAAGIV
+AAYLQFHAERRLVSLSVLDQDLGLPAPRVERRP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001946.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001946.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b37d6bfc0f245e37bd1d622cafd97ba050ef1f0c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001946.fa
@@ -0,0 +1,32 @@
+>KBS0714_MOLHKGIG_01306
+MAELRLTGPTEDGDALRLSGPEGEEHTLPLSPYLRRLVIEGAAPEDGRPAEDGPAAWHDMTEMDVPGADDEDAEGPVDAA
+THADDAAAEDERAPEAPSGPARPDEDLALTPRID-PRPVADDSTADGPTPAPLTDQESVKAAATQEAVPLTPREIQQRIR
+AGASVEQVARESGNAFSRIRTYGHPVLAERDWIARQARAVEVWVGGPDLYSDLVQDGGPTTLGELAAHRLAELGVDEASL
+EWDAWREDQA-GWTVAARFAVAGARSLPTREEPPALWTFRPAGRHLEPENAWARALSEAEAWDLVPRAPAAEPVT--DDV
+--------------DAEDAVTPAGAHSPAADRDADLLEILRVRRGQRVGADLESDDALAHLIAREHQDRSRRE-------
+-------------AAQAPERLAPVDAEGALTTADDAPVVDAPEPAAETDRAEDTAA------------------------
+----DVADAGVEDEGAEP------APRE-------RAARPAMPTVTPRPRARSAARRASVPSWDEIVFGRKGD
+>KD337_NAFOICDF_01482
+MAELRLTGTTEDGHALRLAAPDGTEHTLERTPFLRRLALDDVARPDAVPAAE-----------------------PADGA
+---------------APASPAQADEPSAEAPAPEVPRPAPSPAQEPAAPVTAVAEQADVRAAATAEAQPLSPRDIQARIR
+AGASVEQVARESGNAFSRVRTYGYPVLAERGYIAQQARAVQVWVGGPDLYSGTVADGGPTTLGALAEHRVRELGTDPASL
+EWDAWRESGGVAWTVVARFPLPPRGRALTAEEPPARWSFRPAGGRLDPENAWARILSDAEAWDVF---TAEEPLTREDDA
+AAPQQGGGEEASGGDAPAAVTPLGASPSSVGVDADLLEILRARRGRRVGQDAESDDALAHLIARGVAEREARQDGAEADH
+TEQAETEPAAPGRAARLLRGLPSLREEVAKDGADGRPPVEADSPAAEAAPAVDAAGREDAVTPQAPGKTDAGKTVAGPSG
+ADRTETGQAGTMQADAEPSDAPVAAPQEEEPARTARRERPAMP--TPRPRARSAARRASVPSWDDIVFGKKSD
+>SA211_MHAAABBN_01029
+MAELRLTGPTEDGDALRLSGPEGEEHTLPLSPYLRRLVIEGAAPEDGRPAEDGPAAWHDMTEMDVPGADDEDAEGPVDAA
+THADDAAAEDERAPEAPSGPARPDEDLALTPRID-PRPVADDSTADGPTPAPLTDQESVKAAATQEAVPLTPREIQQRIR
+AGASVEQVARESGNAFSRIRTYGHPVLAERDWIARQARAVEVWVGGPDLYSDLVQDGGPTTLGELAAHRLAELGVDEASL
+EWDAWREDQA-GWTVAARFAVAGARSLPTREEPPALWTFRPAGRHLEPENAWARALSEAEAWDLVPRAPAAEPVT--DDV
+--------------DAEDAVTPAGAHSPAADRDADLLEILRVRRGQRVGADLESDDALAHLIAREHQDRSRRE-------
+-------------AAQAPERLAPVDAEGALTTADDAPVVDAPEPAAETDRAEDTAA------------------------
+----DVADAGVEDEGAEP------APRE-------RAARPAMPTVTPRPRARSAARRASVPSWDEIVFGRKGD
+>TT9_LFPAFLNI_01264
+MAELRLTGPTEDGDALRLSGPEGEEHTLPLSPYLRRLVIEGAAPEDGRPAEDGPAAWHDMTEMDVPRA---DAEEPVDAT
+THADDAAEEGERAPDVPSGPARPDEDLALTPRID-PRPVADDSTADGPTPAPLTDQESVKAAATQEAVPLTPREIQQRIR
+AGASVEQVARESGNAFSRIRTYGHPVLAERDWIARQARAVEVWVGGPDLYSDLVQDGGPTTLGELAAHRLAELGVDEASL
+EWDAWREDQA-GWTVAARFAVAGARSLPTREEPPALWTFRPAGRHLEPENAWARALSEAEAWDLVPRAPAAEPVT--DDV
+--------------DAEDAVTPAGAHSPAADRDADLLEILRVRRGQRVGADLESDDALAHLIAREHQDRSRRE-------
+-------------AAQAPERLAPVDAEGALTTADDAPVVDAPEPAAETDRAEDTAA------------------------
+----DVADAGVEDEGAEP------APRE-------RAARPAMPTVTPRPRARSAARRASVPSWDEIVFGRKGD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001948.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001948.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b28b24253396527580c3854b62bbf9475ab86c0c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001948.fa
@@ -0,0 +1,21 @@
+>KBS0714_MOLHKGIG_01382
+MSVTS------------EIARARSLIRVVPDHPSPGVAFQDITPLLADARALRECVEALV
+APFEGRFDLVAGLEARGFLLAGAAAVLTGTGLVPLRKAGRLPAPAARADYTLEYGTASIE
+VSEDLRA-GSRVLLLDDVLATGGTLAAGRRLIEARGAEVVGAACLLELRALGGRAVVPDT
+HVLFAA
+>KD337_NAFOICDF_01893
+MSGVALSAAGRQAADVPGLERAATLFRSVPDFPTDGVVFQDITPVLADPAALRAVVEAMI
+APFEGAYDAVAGLDARGFLLAGFAAALTGTGVIPLRKAGKLPVSVAHVDYALEYGAASLE
+APPELAVPGVRVLILDDVLATGGTLAAARDLAERCGAEVAGSAVVLEVEGLGGRERCPDA
+LTLFSA
+>SA211_MHAAABBN_01102
+MSVTS------------EIARARSLIRVVPDHPSPGVAFQDITPLLADARALRACVEALV
+APFEGRFDLVAGLEARGFLLAGAAAVLTGTGLVPLRKAGRLPAPAARADYTLEYGNASIE
+VSEDLRA-GSRVLLLDDVLATGGTLAAGRRLIEARGAEVVGAACLLELTALGGRAVVPDT
+HVLFAS
+>TT9_LFPAFLNI_01337
+MSVTS------------EIARARSLIRVVPDHPSPGVAFQDITPLLADARALRECVEALV
+APFEGRFDLVAGLEARGFLLAGAAAVLTGTGLVPLRKAGRLPAPAARADYTLEYGTASIE
+VSEDLRA-GSRVLLLDDVLATGGTLAAGRRLIEARGAEVVGAACLLELRALGGRAVVPDT
+HVLFAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001954.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001954.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bc75817868a516fa2f3f62c79fb7631365680b8d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001954.fa
@@ -0,0 +1,17 @@
+>KBS0714_MOLHKGIG_01453
+MARVKRAVNAHKKRRTMLERASGYRGQRSRLYRKAKEQMLHSFTYNYQHRHKRKGDFRRL
+WITRINAAARANGMTYNRFMQGLKLAGVEVDRRMLAEIAVSDAATFAVLVKTAREALPAD
+VNAPAVSR
+>KD337_NAFOICDF_01350
+MARVKRAVNAHKKRRTALNRASGYRGQRSRLYRKAKEQLLHSFTYNYQHRHKRKGDFRRL
+WITRINAAARANGMTYNRFMQGLKLAGIEVDRRMLAEIAVSDAATFTALVETARTALPAD
+VNAPAASR
+>SA211_MHAAABBN_01185
+MARVKRAVNAHKKRRTMLERASGYRGQRSRLYRKAKEQMLHSFTYNYQHRHKRKGDFRRL
+WITRINAAARANGMTYNRFMQGLKLAGVEVDRRMLAEIAVSDAATFAVLVQTAREALPAD
+VNAPAASR
+>TT9_LFPAFLNI_01403
+MARVKRAVNAHKKRRTMLERASGYRGQRSRLYRKAKEQMLHSFTYNYQHRHKRKGDFRRL
+WITRINAAARANGMTYNRFMQGLKLAGVEVDRRMLAEIAVSDAATFAVLVKTAREALPAD
+VNAPAASR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001955.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001955.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b74a03b8e6fe136f8548a560ebcd965a49065d9e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001955.fa
@@ -0,0 +1,40 @@
+>KBS0714_MOLHKGIG_01470
+MTVSGPGLSAAPAA-----EPGAEPVEPAAGRPRSWVPGPAW--RALRRRWRRSLRLRTAVLAALLSILAGLVVAAFLTQ
+QITQALFEARYEQVQAEARRGLSQVRETFAQTTATDAQSTDVLVTQTLRALEGDSGTTIRRRYHLAPLPGSESAYVGTIS
+SAGLDPAVIPQELQDAVASGPGVYDASVALPDPGGGTRPGLVFGAQVVLPPGATYGLYLVYDLADVQSSLDSVLGVLLVF
+GVGFLVINVLVSWWVSRRVTLPVQQAARAAESLSSGNLAVRMPVDGEDEMARLGMSFNRMADSIQDQIGQLAQLSQMQQR
+FVSDVSHELRTPLTTVRMAADVLYGSREDFDPVNRRSTELLYHQVDRFQAMLADLLEITRFDAGAATPALEATDMLELAR
+DVVLTSQPLADQSGVPVYVVPMDRDRADGHVAWVDPRRIERILRNLVNNAIEHAEGRPVDVLVAADEEAVTFAVVDHGIG
+MSPEQVQRVFDRFWRADPSRKRTTGGSGLGLAIATEDTRLHGGRLEAWGELGEGSTFMVTLPRAPRPAAQGAEAPEPIGR
+SVLPIPPRYSTADRRYADDLSRPVPQEADADADAVGRVADVAATAADAPPCARQDEQALTAPTRPVRRVPPGDPADGPAA
+GDRTGEDAAEEAR
+>KD337_NAFOICDF_01332
+M--TAPAEPPQPAETGDPDETGATSAPASAGPSTSAAPPRAGLRRRLRRRWNGSLQLRTAVLAGLLTLLASLMISGLITQ
+QVAQALFDARHQQVEAEARRGLARVQSTFANAAATDQQATDALVSQTMRALELDGGTTIRRRFRLEPLPGGTAASVGTVS
+SQGLDADVIPQDLRDAVASGPGVYDASIALPAADGNTRPGLAYGTQVVLPPGATYALYLVYDLSDVQESLDSVLGVLLMF
+GSGFLLVTVLVSWWAAHSVVRPVQQAATAAESISGGNLAVRMPVRGDDEMARLGTSFNRMADSIQAQITQLAQLSRMQQR
+FVSDVSHELRTPLTTVRMAADVLYGSREDFDPVNRRSTELLYHQVDRFQAMLADLLEITRFDAGAAQLALEDTDLLALAR
+DVVLTAAPLADQAKVPVYLVPLPLEEGLDCVAQVDPRRIERILRNLVNNAIEHAEGSPVDVLVAADEGAVSVAVVDEGIG
+MSPEQVQRVFDRFWRADPSRKRTTGGSGLGLAIATEDTRLHGGRLEAWGELGVGSVFMVTLPR-----RNGAES--PVRR
+AVLPMPPSYDRGGRRLAADLHTPV----------TGPEGTGVHDAAALPERGREQEL-----------------------
+-------------
+>SA211_MHAAABBN_01202
+MTVSGPDVSAAPAA-----ESGAEPVEPAAARPRSWGPGPAW--RALRRRWRRSLRLRTAVLAALLSILAGLVVAAFLTQ
+QITQALFEARYEQVQSEARRGLSQVRETFAQTTATDAQSTDVLVTQTLRALEGDSGTTIRRRYHLAPLPDSESAYVGTIS
+SAGLDPAVIPQELQDAVASGPGVYDASVALPNPGGGTRPGLVFGAQVVLPPGATYGLYLVYDLADVQSSLDSVLGVLLVF
+GVGFLVINVLVSWWVSRHVTLPVQQAARAAESLSSGNLAVRMPVDGEDEMARLGMSFNRMADSIQDQIGQLAQLSQMQQR
+FVSDVSHELRTPLTTVRMAADVLYGSREDFDPVSRRSTELLYHQVDRFQAMLADLLEITRFDAGAATPALEATDMLELAR
+DVVLTSQPLADQIGVPVYMVPMDRDRADGHVAHVDPRRIERILRNLVNNAIEHAEGRPVDVLVAADEEAVTFAVVDHGIG
+MSPEQVQRVFDRFWRADPSRKRTTGGSGLGLAIATEDTRLHGGRLEAWGELGEGSTFMVTLPRAPRPAVQGAEAPEPIGR
+SVLPIPPRYSTADRRYADDLSRPVPQE--ADADAVGTVADVATA---APPSARQAEQALTAPTRPVRVVPAEDPAHGSAP
+GDPTGDDPAEEAR
+>TT9_LFPAFLNI_01420
+MTVSGPGLSAAPAA-----EPGAEPVEPAAGRPRSWVPGPAW--RALRRRWRRSLRLRTAVLAALLSILAGLVVAAFLTQ
+QITQALFEARYEQVQAEARRGLSQVRETFAQTTATDAQSTDVLVTQTLRALEGDSGTTIRRRYHLAPLPGSESAYVGTIS
+SAGLDPAVIPQELQDAVASGPGVYDASVALPDPGGGTRPGLVFGAQVVLPPGATYGLYLVYDLADVQSSLDSVLGVLLVF
+GVGFLVINVLVSWWVSRRVTRPVQQAARAAESLSSGNLAVRMPVDGEDEMARLGTSFNRMADSIQDQIGQLAQLSQMQQR
+FVSDVSHELRTPLTTVRMAADVLYGSREDFDPVNRRSTELLYHQVDRFQAMLADLLEITRFDAGAATPALEATDMLELAR
+DVVLTSQPLADQIGVPVYVVPMDRDRADGHVAWVDPRRIERILRNLVNNAIEHAEGRPVDVLVAADEEAVTFAVVDHGIG
+MSPEQVQRVFDRFWRADPARKRTTGGSGLGLAIATEDTRLHGGRLEAWGELGEGSTFMVTLPRAPRPAAQGAEAPEPIGR
+SVLPIPPRYSTADRRYADDLSRPVPQE--ADADAVGTVADVTAAAADAPPSARQAEQALTAPTRPVRMVP---PADGTAA
+GGWTGDDGAEEAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001963.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001963.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8f098702614b7fb7a37f6a8b5252ca1aea05314a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001963.fa
@@ -0,0 +1,33 @@
+>KBS0714_MOLHKGIG_01893
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------MAGRWRAGAALTIRGEFSIVI--------
+-------------------AGPVLTRYADAFGRSRARAATRRVRAREVAAADPVH
+>KD337_NAFOICDF_00903
+MHGTTLALVELGAVLFLLGVLGRLAARIGMSPVPLYLLGGLLIGVGGLLFSGADPSGTLR
+SPVAAIGDFSSLAAEIGVVLLLLTLGLEYSARELMTGLRGSWRSGLLDVALNFTPGAAAG
+WLLGWGPVGAVVLGGITYISSSGIIAKVLNDLGRVGNRETPVMLSVLVFEDLAMAVYLPL
+MTALVAGSAFAAGLRAVGIALVVVAAVLFTALRFGPQISRLVYSPEQETFLLKVLGLALL
+VAGVAGALQVSAGVGAFLLGIAISGAAAKQARSVLEPLRDMFAALFFVLFGMNVDPRTLP
+PVLLGALALAVVTAATKVATGYLAARAAGIGVAGRWRAGATLTIRGEFSIVIAGLATASG
+TLPAEVSAFATAFVLILAVAGPLLTRSADGFGRRRAAAA--RVREARRARQAPLV
+>SA211_MHAAABBN_01589
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------MAGRWRAGAALTIRGEFSIVI--------
+-------------------AGPVLTRYADAFGRSRARAATRRVRAREVAAADPVH
+>TT9_LFPAFLNI_01813
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------MAGRWRAGAALTIRGKFSIVI--------
+-------------------AGPVLTRYADAFGRSRARAATRRVQAREVAVADPVH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001964.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001964.fa
new file mode 100644
index 0000000000000000000000000000000000000000..630d2437effda6258eb14c19ffbfddd27c608b39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001964.fa
@@ -0,0 +1,37 @@
+>KBS0714_MOLHKGIG_01912
+MSHADIPHAGPDGSTPSGTAPKTDSRAASATRRTALLGAMFLMATSAIGPGFITQTATFT
+VQMGAAFAFAILVSILIDVAVQMNVWRVIGVSGMRAQELANRVLPGLGWVLAALVFLGGM
+VFNIGNIAGTGLGANAMLGVDPLIGGGVSALIALLIFLSKRAGVALDRIVVALGAVMILL
+MLYVAITSAPPVGEALRQSVMPEKVDFFVIVTLVGGTIGGYITYAGAHRMIDSGVKGVDD
+VQDITRSSVASILVTGLMRALLFLAILGVVASGAVLSKDSLAASAFQAAAGDIGLRMFGI
+VLWAAAVTSVIGASYTSISFVTRSTTSVRTRNLLTVAFIVVCTALYLALRQAPQTLLVFA
+GAFNGMILPVGFAALLYVAWRRRDLLHGYRYPAWLLVMGALAWLVSVFIAVRGFVPMVTM
+ITGA
+>KD337_NAFOICDF_00883
+MSHAD-PTAHARGDAAAGEA----VQASSSNRRTALLGAMFLMATSAIGPGFITQTATFT
+VQLGAAFAFAILVSILIDIAVQMNVWRVIGVSGMRAQELANSVLPGLGWVLAVLVFVGGL
+VFNIGNIAGTGLGANAMLGVDPLIGGAVSAVIALLVFLSKRAGVALDRIVVVLGAVMILL
+MLYVAVTSAPPVGEALRQSVFPEKVDFFVIVTLVGGTIGGYITYAGAHRMIDSGVKGVDD
+VEAITRSSVLSILVTGVMRVLLFLAILGVVASGVALAKDNLAASAFQAAAGDIGLRMFGI
+VLWAAALTSVIGASYTSVSFVTKSTTTTRTRNLLTVAFIVVCTVLYLALRQTPQTLLVFA
+GAFNGMILPIGFAALLWVAWRRRDLLGGYRYPTWLLVIGALSWLLSVFIAVRGFLPMVQM
+ITGA
+>SA211_MHAAABBN_01608
+MSHADIPHAGPDGSTPSGTAPKTDSRAASATRRTALLGAMFLMATSAIGPGFITQTATFT
+VRMGAAFAFAILVSILIDIAVQMNVWRVIGVSGMRAQELANRVLPGLGWVLAALVFLGGM
+VFNIGNIAGTGLGANAMLGVDPLIGGGVSALIALLIFLSKRAGVALDRIVVALGAVMILL
+MLYVAITSAPPVGEALRQSVMPEEVDFFVIVTLVGGTIGGYITYAGAHRMIDSGVKGVDD
+VQDITRSSVASILVTGLMRALLFLAILGVVASGAVLSKDNLAASAFQAAAGDIGLRMFGI
+VLWAAAVTSVIGASYTSISFVTRSTTSARTRNLLTVAFIVVCTALYLALRQAPQTLLVFA
+GAFNGMILPVGFAALLYVAWRRRDLLHGYRYPGWLLVIGALAWIVSVFIAVRGFIPMVEM
+ITGA
+>TT9_LFPAFLNI_01832
+MSHADIPYAGPDGSTPSGTAPKTDSRAASATRRTALLGAMFLMATSAIGPGFITQTATFT
+VRMGAAFAFAILVSILIDVAVQMNVWRVIGVSGMRAQELANRVLPGLGWVLAALVFLGGM
+VFNIGNIAGTGLGANAMLGVDPLIGGGVSALIALLIFLSKRAGVALDRIVVALGAVMILL
+MLYVAITSAPPVGEALRQSVMPEEVDFFVIVTLVGGTIGGYITYAGAHRMIDSGVKGVDD
+VQDITRSSVASILVTGLMRALLFLAILGVVASGAVLSKDNLAASAFQAAAGDIGLRMFGI
+VLWAAAVTSVIGASYTSISFVTRSTTSARTRNLLTVAFIVVCTALYLALRQAPQTLLVFA
+GAFNGMILPVGFAALLYVAWRRRDLLHGYRYPGWLLVIGALAWIVSVFIAVRGFIPMVEM
+ITGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001966.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001966.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f8d4af0671b58ecf2bbb438ab730bc35c6209fef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001966.fa
@@ -0,0 +1,21 @@
+>KBS0714_MOLHKGIG_01914
+MRVPTRDGVTGDDLAPGAGDGESAPAPAPVAAAAQLRQRIAAAGLVPGERLGEVALAAEL
+QVSRNSLREAFTMLASEGLVERRPHRGVFVAAPGPEDVRGLYRTRRVIQLGALEHGELTP
+GAARQLRCAQDLLSGGPDTPARVLGDANHRVHVGIVDLAGAPELTRLMASVQARVRLAFH
+PMDEQTRLHVQFADRNRWIVERLLAGDLPAVHAVFGDYLDEAEQFVLAHL--AAVG--D
+>KD337_NAFOICDF_00881
+M-----------------------TAPAAQGAADALRRRIGEARLQPGERLGEVALAAEL
+GVSRNSLREAFSELAVEGLVVRRPHRGVFVAAPGAEDVRGLYRTRRVIQLGALQHGWLTP
+AAEERIGRSAELL-GRPEPAVRELGDANHLLHLGIVDLAASPDLSRVMSSVLARVRLSFL
+PLDLETGLHQAFAERNRWIAGRLLAGDLDAVHAMLEGYLDEAEAFVLRHLDGAAHGLRG
+>SA211_MHAAABBN_01610
+MRVPARGGVTGEGLAPGVGGGESAPAPAPVAAAAQLRQRIAAAGLVPGERLGEVALAAEL
+QVSRNSLREAFTMLASEGLVERRPHRGVFVAAPGPEDVRGLYRTRRVIQLGALEHGELTP
+GAARQLRCAQDLLSGGPDTPARVLGDANHRVHVGIVDLAGAPELTRLMASVQARVRLAFH
+PMDEQTRLHVQFADRNRWIVERLLAGDLPAVHAVFGDYLDEAEQFVLAHL--AAVG--D
+>TT9_LFPAFLNI_01834
+MRVPARGGVTGEGLAPGVGGGESAPAPAPVAAAAQLRQRIAAAGLVPGERLGEVALAAEL
+QVSRNSLREAFTMLASEGLVERRPHRGVFVAAPGPEDVRGLYRTRRVIQLGALEHGELTP
+GAARQLRCAQDLLSGGPDTPARVLGDANHRVHVGIVDLAGAPELTRLMASVQARVRLAFH
+PMDEQTRLHVQFADRNRWIVERLLAGDLPAVHAMFGDYLDEAEQFVLAHL--AAVG--D
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001967.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001967.fa
new file mode 100644
index 0000000000000000000000000000000000000000..899a86b0412d6039e0049e390510fac2e1bdf2ce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001967.fa
@@ -0,0 +1,36 @@
+>KBS0714_MOLHKGIG_01916
+MSAPHHPAAEPPARPIRWVGTQGFLVECASLEDVMAVHAHLTAHPERGQRQVMAAAATVLVTFTSQAAAEHAAPRVSTLT
+PDAGEVTGGRIVEIPVVYDGEDLAEVGRLTGLGVDGVIRAHSEADWFAAFGGFAPGFMYCASEAAPFEAPRRSSPRTAVP
+AGAVAVAGAFSAVYPRTSPGGWQLLGHTTAALWDLGREQPALLQPGDRVRYVPVRPT-------ASVTSGTDAAVDATPP
+ADAAAGLPSVAGRRGVTVVDPGLLTLVQDLGRPGLGDLGVVASGAADRDAARQANRLVGNRSREAVLETVLGGLTLAAHG
+HQVMALAGAEAGGTITAADGAARRVPARSPFVVLDGQTLTVDEPVGGLRVYVGLRGGIDVPPVLGSRSTDTLSGLGPAPL
+TAGDRLARRVGPDARGAAGASAARPTAAGAPASEEAGVVMVGDPETSLRPMPAPGQVAVLRVVPGPRDDWFGEAGLERLF
+TQDWDVSQQTDRIGVRLTAPDDGAPLERVREGELKSEGAVRGALQVPPSGEPVLFLSDHPVTGGYPVIGVVARADLSLAA
+QLPPGARVRFVPHPRPGAETVVDSASPSEETPA
+>KD337_NAFOICDF_00879
+MSGTQAPGAATP-RPIRAVGTQAFLVECASLADVMAVHAHLVAHPERGQRQVLSAARTVLVTFTSQAAAQHAAPRVAALD
+PDAQDRDAGRTVEIPVVYDGEDVAEVGRLTGLSPEAVVRAHVETDWFAAFGGFAPGFLYCAAEAPPFDVPRRDSPRTAVP
+AGAVAVAGQLSAVYPRTSPGGWQLLGHTDAVMWDLGRERPALLEPGDRVRYVPVRAEAVRGAAPAAEAPAEDTLVAAHTP
+DAGEASAP------GLTVADPGLFTLLQDLGRPGLGDLGVVASGAADRDAARQANRLVGNASGEAVLETVLGGLALTARG
+DQVLALAGAEATGVVTGPGGVARPVSPRTPFPLLDGETLTVQEPTAGLRVYVGVRGGLEAPRTLGSRATDTLSGLGPAPL
+TAGQALARHADLDA-------------------PRAGVVPVGDPEAPLRPMPAPGGTAVLRVVPGPRDDWFGPAGLERLT
+AQEWAVSQQTDRIGVRLTAGEAG-PLERIRTGELASEGAVRGALQVPPSGEPVLFLADHPVTGGYPVIGVVARADLGLAA
+QLPPGARVRFVLHPQPSQE-------PT----A
+>SA211_MHAAABBN_01612
+MSAPHHPAAEPPARPIRWVGTQGFLVECASLEDVMAVHAHLTAHPERGQRQVMAAAATVLVTFTSQAAAEHAAPRVSTLT
+PDAGEVTGGRIVEIPVVYDGEDLAEVGRLTGLGVDGVIRAHSEADWFAAFGGFAPGFMYCASEAAPFEAPRRSSPRTAVP
+AGAVAVAGAFSAVYPRTSPGGWQLLGHTTAALWDLGREQPALLQPGDRVRYVPVRPT-------ASVTSGTDAAVDATPP
+ADAAAGLPSVAGRRGVTVVDPGLLTLVQDLGRPGLGDLGVVASGAADRDAARQANRLVGNRSREAVLETVLGGLTLAAHG
+HQVMALAGAEAGGTITAADGATRRAPARTPFVVLDGQTLTVDEPVGGLRVYVGLRGGIDVPPVLGSRSTDTLSGLGPAPL
+TAGDRLARRVGPDARGAAGASAARPTAAGAPASAEAGVATVGDPETSLRPMPAPGQVAVLRVVPGPRDDWFGEAGLERLF
+TQDWDVSQQTDRIGVRLTAPDDGAPLERVREGELKSEGAVRGALQVPPSGEPVLFLSDHPVTGGYPVIGVVARADLSLAA
+QLPPGARVRFVPHPRPGAETVVDSASPSEETPA
+>TT9_LFPAFLNI_01836
+MSAPRHPAATPPARPIRWVGTQGFLVECASLEDVMAVHAHLTAHPARGQRQVMAAAATVLVTFTSQAAAEHAAPRVSTLT
+PDAGELTGGRIVEIPVVYDGEDLAEVGRLTGLGVDGVIRAHSEADWFAAFGGFAPGFMYCASEAAPFEAPRRSSPRTAVP
+AGAVAVAGAFSAVYPRTSPGGWQLLGHTTAALWDLGREQPALLQPGDRVRYVPVRPT-------ASLTSGADAAVDATPP
+ADAAAGLPSVAGRRGVTVVDPGLLTLVQDLGRPGLGDLGVVASGAADRDAAHQANRLVGNRSREAVLETVLGGLTLTAHG
+HQVMALAGAEAGGTITAADGATRRVPARTPFVVLDGQTLTVDEPVGGLRVYVGLRGGIDVPPVLGSRSTDTLSGLGPAPL
+TAGDRLARRVGPDARGAAGASAASPTAAGAPASAEAGVATVGDPETSLRPMPAPGQVAVLRVVPGPRDDWFGEAGLERLF
+TQDWDVSQQTDRIGVRLTAPDDGAPLERVREGELKSEGAVRGALQVPPSGEPVLFLSDHPVTGGYPVIGVVARADLSLAA
+QLPPGARVRFIPHPRPGAETVVDSASPSEETPA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001970.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001970.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1c92e21323358a2783c07dbe4862f2e27afa39f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001970.fa
@@ -0,0 +1,29 @@
+>KBS0714_MOLHKGIG_01997
+MPRRPAPLPPSIDPAAFTVDDARRAGVTWSRLQSSDLRRLRHGIYGP------AGPAAAS
+VREWTMDEVRAYQRRHPGVVVSHETAARLHGLTVPARLLAPGAVHVSVGTSGGRPVQAGL
+VPHRIEVPEGQRMTRGGVLVTTPARTLWDLCAARSALTERDVVAAGDALLCPPWLPGGGR
+GAPAYTPEELVRSLAERGRFRGRGLARAALARMRVGADSPRETRLRLALVDAGLPEPEVQ
+CRLDPSD-RRAPTVDLGYRQWRLALQYDGEHHRTAEQQARDVLRDRWCADHDWLSIKVMW
+ADARDDYADVVARVRRRAAEFGG
+>KD337_NAFOICDF_00796
+MPLRPVALPDSLISGPFTTRELLAAGAPAQRVRSPDLRRVAHGIHRPRSASGSTGDATAA
+ERGWLPEEVRAYQRMVPHAVVSHTTAARLHGLPLPAWAADERDVHLTFTAGAGRTRRRGL
+VAHQAGIPALDVALVAGVRVTTPPRTLWDLCSLHPRLSVEDLVVVADAVMAPGWDDEHGF
+LPGEHSAAALREALGRRGRFRGVRAAREVAERMREDVASPMETRTRLALVDQGLPEPEVQ
+VRLWGEDGAKGPVVDLAFPQWRVVVQYEGARHRTREQQERDVRRDRWCADHGWTVIKVVA
+ADVHAGLGPVAARILRLARQ---
+>SA211_MHAAABBN_01691
+MPRRPAPLPPSIDPTAFTVDDARRAGVTWSRLQSSDLRRLRHGIYGP------AGPAAVS
+VREWTMDEIRAYQRRHPDVVVSHETAARLHGLTVPARLLAPGAVHVSVGTSGGRPVQASL
+VPHRIEVPEGQRMTRGGVLVTTPARTLWDLCAARAALTERDVVVAGDALLCPPWLPGGGR
+GDPAYTPEELVRSLAERGRFRGRGLARAALARMRVGADSPRETRLRLALVDAGLPEPEVQ
+CRLDPSD-RRAPTVDLGYRPWRLALQYEGEHHRTAEQQARDVLRDRWCADHDWLSIKVMW
+ADARNDYADVVARVRRRAAAFGG
+>TT9_LFPAFLNI_01923
+MPRRPAPLPPSIDPAAFTVDDARRAGVTWSRLQSSDLRRLRHGIYGP------AGPAAVS
+VREWTMDEVRAYQRRHPDVVVSHETAARLHGLTVPARLLAPRAVHVSVGTSGGRPVQAGL
+VPHRIEVPQGQRMMRGGVLVTTPARTLWDLCAARSALTERDVVVAGDALLCPPWLPGGGR
+GAPACTPEELVRSLAERGRFQGRGLARAALARMRVGADSPRETRLRLALVDAGLPEPEVQ
+CRLDPSD-RRAPTVDLGYRPWRLALQYEGEHHRTAEQQARDVLRDRWCADRDWLSIKVMW
+ADARDDYADVVARVRRRAAAFGG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001974.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001974.fa
new file mode 100644
index 0000000000000000000000000000000000000000..04a4691f3cd87d3ded16dc2f5161aa92e5aa62ea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001974.fa
@@ -0,0 +1,40 @@
+>KBS0714_MOLHKGIG_02062
+MS---------------------EHFDVAVLGLGPGGEVAADRLLKAGK-NVVVFEREL---IGGECAYWACIPSKTVLR
+PPEARTEVQRAAGVSGAELDWAATAKYR---DYMIRNLDDQAQVDGYIKEGA----------------VVIKDEARITGP
+GRIQ------AGDREITAEH-IIIATGSDAVIPPLDGIDQITAWTNRETYTTSTLPERAVIIGGSAVGV-----------
+------ETATFLARFGVAITLIHCGERLLDREG------PRVGELAHQYLQEAGIDIRLATSAVQARREGADSIIELQTR
+DGDP-------AGE-VAADVVIFGTG-----------------RTPRTEGLGFEHAGVTLGD----HGEIQIDDHCRAGE
+NTW------------AIGDVTGIMPFTHVAKYQGRIAADAI----LGRPHPAT----------------------YDGIP
+RVVFTDPEIAGAGLTQEQATKQG----IRTIATELDLADAIARPWTYEQDSRGHLGLLADADRKILIGAW--------AV
+GPMAGEWIHHASLAIRTQLPIDTLLDQVAQFPTYHEAYQVALEQ--------------LDLT------------------
+--P
+>KD337_NAFOICDF_02222
+MS---------------------EHFDVAVLGLGPGGEVAADRLLKAGK-NVVVFEREL---IGGECAYWACIPSKTVLR
+PPEARTEVQRAAGVSGAELDWAATAKYR---DYMIRNLDDQAQVDGYIKEGA----------------VVIKDEARITGP
+GRIQ------AGDREITAEN-IIIATGSDAVIPPLDGIDQITAWTNRETYTTSTLPERAVIIGGSAVGV-----------
+------ETATFLARFGVAITLIHCGERLLDREG------PRVGELAHQYLQEAGIDIRLATSAVQARREGADSIIKLQTR
+DGDP-------AGE-VAADVVIFGTG-----------------RTPRTEGLGFEHAGVTLGD----HGEIQIDDHCRAGE
+NTW------------AIGDVTGIMPFTHVAKYQGRIAADAI----LGRPHPAT----------------------YDGIP
+RVVFTDPEIAGAGLTQEQATKQG----IRTIATELDLADAIARPWTYEQDPRGHLGLLADADRKILIGAW--------AV
+GPMAGEWIHHASLAIRTQLPIDTLLDQVAQFPTYHEAYQVALEQ--------------LDLT------------------
+--P
+>KD337_NAFOICDF_02426
+MTEDLAPTTGPDDATP--GAPDEEAVDVVVIGAGPVGENAAQYAHTAGGLEVALVEADL---LGGECSYWACMPSKALLR
+PLEVAGAAAHLGGLTDPDIDLPGLLARR---DEWRSHLDDAGQVEWAEDAGL----------------RVVRGHGRLAGP
+RRVEVLGDDGAPARVLRARHAVVVATGSTAVVP--GELRGVSPWTSRDATGVREVPGRLAIVGGGVVAV-----------
+------EAATWMAALGSDVQLLVRGDRLLSGQE------PVASRLVLEGLVDAGVRVRFGTSVERAERADVHAESDVGVP
+HGGPVRLTLAGSGETLEVDELLVAAG-----------------RRPALDGLGLEALGLSAEDLQDESGTAVVPASDGAAP
+WLY------------AVGDVTGGPALTHWGKHRARLLGERIAALATGRPAPSG---------------EEAGEGVPEAVP
+QVVFTSPQVARVGVTEAQAREEGGEGELRVVDVPLTSAAGAA---LLRDDAAGRAVLVLRGDR--VVGAT--------FV
+GFEVAELLHAATVAIVGEVPLDRLRHAVAAYPTASEVWLRLVEEALGRG-------------------------------
+---
+>KD337_NAFOICDF_02440
+MSSVI-----PDTARPSSGHAGVHRADVVVLGHGLAGLVAACELLEAGR-SVVLVDQERAADLGGQ-AWWSFGGLFLVDS
+PEQRRLRVRDSVDLAWS--DWRETAGFTGGDDALPR-----AWAEAYVHFAAGEKRAWLRERGHRLFPVVGWAERKVPAP
+G---------VGGNSVPRFH-ITWGTGP-GIVEPFAAVVEQAAFDGRLTYLPRHRVTELVTQNGAVCGVRGDRLADDDGA
+RGTSSSRTVTGAFEVRAQAVLIASGGIGADHDAVRAAWPDRLGTPPERML--SGVPAYVDGSGVAAARAVGAHMLHPDRM
+WHYT-------EGV-ANWDPVWPGHGIRILPGPSSLWLDAAGRRLPHPRWPGFDTLG-ALGEICRPGGARRAEG----AD
+HTWFVLNERIIGREFALSGSEQNPDLT--GRSLGHVLGRAT----QGVPAPVRAFLDHGEDFVQAATVEELVDQMNELQD
+RTGGGGPRVELHAVRQAVAEHEDG------------AARAGVDP---QLDAVRRARQYL-GDR--LIRTAAPHRLTDPAA
+GPLIAVRLRTLTRKTLGGLHTD-LRGRVLDELGGPVPGLYAAGEAAGFGGGGMHGFRALEGTFLGGCLFSGRTAGRALAE
+DVA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001978.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001978.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d290d50f0056d55cc5472eae73db1a5116ce974
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001978.fa
@@ -0,0 +1,37 @@
+>KBS0714_MOLHKGIG_02222
+MTHRNPEDNALRGA----PEPRTLAEACDLVTTPDLDVSADGMFGQYGGAHLPPQLAGPM
+AEVARAYAEARQDPEFYAEYRRLLRDAVGRPSPLTPLDRLSDELGGARIVLKREDLNHTG
+AHKINHTIGEALLAKRMGKRSLIAETGAGQHGVALATAAAMVGLDCEIHMGAIDVAKQHP
+NVVRMRLLGTKVVSVEREGRSLKEAVDSAFEVYAADPEKYLFAIGSVVGPHPFPTMIRDF
+QSVVGREARAQFQERFGALPSAVVAAVGGGSNAMGAFTAFLDDADVALVGVEPGGRSATK
+GEHAMTMTQGRDGVLHGMATLVLADDDGTPDPVHSIASGLDYPGVGPQHAHFARLGRVRY
+VAEDDAAVLDAFQRLTRLEGVIPALESAHAVAHAIRLAPQMGRDERILVNLSGRGDKDVD
+YVAEKLGLTGEADEVVR
+>KD337_NAFOICDF_00461
+MTHRNPEDNALRAADAARPEPRTLAEATDLVHTPDLTAGADGMFGTYGGAVLPPELAGPM
+AEVAEAYEEARHDPEFYAEYRRLLRDVVGRPSPLTPLDRLSDELGGARIVLKREDLNHTG
+AHKINHTIGEALLAKRMGKRSLIAETGAGQHGVALATAAAMVGLDCEIHMGSIDVAKQHP
+NVVRMRLLGATVVSVDREGRSLKEAVDSAFDVYASDPAHYLFAIGSVVGPHPFPTIVRDF
+QAVVGREARAQFLERYGALPSAVVAAVGGGSNAMGAFTAFLDDADVRLIGVEPGGRSATK
+GEHAMSMAQGVDGVLHGMATKVLQDEQGVPDPVHSIASGLDYPGVGPQHARLAQLGRVEY
+VAEDDAAVLEAFQRLTKLEGIIPALESAHAVARAIRMAPGLGTDQRILVNLSGRGDKDVD
+YVAETLGLTGDADEVVR
+>SA211_MHAAABBN_01938
+MTHRNPEDNALRGA----PEPRTLAEACDLVTTPDLDVSADGMFGQYGGAHLPPQLAGPM
+AEVARAYAEARQDPEFYAEYRRLLRDAVGRPSPLTPLDRLSDELGGARIVLKREDLNHTG
+AHKINHTIGEALLAKRMGKRSLIAETGAGQHGVALATAAAMVGLDCEIHMGAIDVAKQHP
+NVVRMRLLGTKVVSVEREGRSLKEAVDSAFEVYAANPEKYLFAIGSVVGPHPFPTMIRDF
+QSVVGREARAQFQERFGALPSAVVAAVGGGSNAIGAFTAFLDDADVALVGVEPGGRSAAK
+GEHAMTMTQGRDGVLHGMATLVLADDDGTPDPVHSIASGLDYPGVGPQHAHFASVGRVRY
+VAEDDAAVLDAFQRLTRLEGVIPALESAHAVAHAIRLAPQMGRDARILVNLSGRGDKDVD
+YVAEKLGLTGEADEVVR
+>TT9_LFPAFLNI_02161
+MTHRNPEDNALRGA----AEPRTLAEACDLVTTPDLDVSADGMFGQYGGAHLPPQLAGPM
+AEVARAYAEARQDPEFYAEYRRLLRDAVGRPSPLTPLDRLSDELGGARIVLKREDLNHTG
+AHKINHTIGEALLAKRMGKRSLIAETGAGQHGVALATAAAMVGLDCEIHMGAIDVAKQHP
+NVVRMRLLGTKVVSVEREGRSLKEAVDSAFEVYAADPEKYLFAIGSVVGPHPFPTMIRDF
+QSVVGREARAQFQERFGALPSAVVAAVGGGSNAMGAFTAFLDDADVALVGVEPGGRSATK
+GEHAMTMTQGRDGVLHGMATLVLADDDGTPDPVHSIASGLDYPGVGPQHAHFARVGRVRY
+VAEDDAAVLDAFQRLTRLEGVIPALESAHAVAHAIRLAPQMGRDERILVNLSGRGDKDVD
+YVAEKLGLTGEADEVVR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001980.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001980.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d020f8b70dbeb27a8c26a65ab5ce9ec53df4d802
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001980.fa
@@ -0,0 +1,33 @@
+>KBS0714_MOLHKGIG_02263
+MSNDPRPTPWAVGWEERPWAAGPDDAGLRSRSARVRASGPYRAALPARIARLGLDLPSDL
+ATEVEEATAAVVRFDAEISHALPGLTGEIAPIDAVLLRTESASSSQIEHITAGARALALA
+TLGERTRPNATLVAANVRAMGAASRLAADLDEPALLAAHRALMDGQEHARPGAYRDAQGW
+IGGGAPTPHTAQFVPPHPERLRAGMDDLFAYLRRTDVPALVQAAIAHAQFETIHPFADGN
+GRTGRVLVHAVLHRAGAITRMGVPLSAGLLTDTAGYFDALTAYRDGDPAPIVRRFAQAAL
+AAVGNGRELVADLDEALTGWRERLTARRDAAVWRALAVIIAQPAVTVDHLAQALGVSRPA
+AQRAVDQLVEAGALQAASAQRRNRVWLATEVLACLDEFAARAGRRG
+>KD337_NAFOICDF_00428
+MGMD-QTISTAVGWEERPWTADPDDAGALTRRARVRASGPYRAALPARIARLGLDLPSDL
+ATAVEEATAAVVRFDAEISHALPGLTGEIAPIDAVLLRTESASSSQIEHITAGARALALA
+TLGERTRPNAALVAANVKAMGAASRLAADLDEPALLAAHRALMDGQEHARPGAYRDAQGW
+IGGGAPTPHTAQFVPPHPERLHAEMDDLFAYLRRTDVPALVQAAIAHAQFETIHPFADGN
+GRTGRVLVHAVLYRAGAITRMGVPLSAGLLTDTAGYFDALTAYRDGDPEPIVRRFAMAAL
+AAVGNGRELVADLDEALTGWRERLTARRDAAVWRALAVIIAQPAVTVDHLAQVLGVSRPA
+AQRAVDQLVEAGALQAVSAQRRNRVWLATEVLACLDEFAARAGRRG
+>SA211_MHAAABBN_01958
+MSNDPRPTPWAVGWEERPWAAGPDDAGLRSRSARVRAAGPYRAALPARIARLGLDLPSDL
+ATEVEEATAAVVRFDAEISHALPGLTGEIAPIDAVLLRTESASSSQIEHITAGARALALA
+TLGERTRPNAALVAANVRAMGAASRLAADLEEPALLAAHRALMDGQEHARPGAYRDAQGW
+IGGGAPTPHTAQFVPPHPERLRAGMDDLFAYLRRTDVPALVQAAIAHAQFETIHPFADGN
+GRTGRVLVHAVLHRAGAITRMGVPLSAGLLTDTAGYFDALTAYRDGDPAPIVRRFAQAAL
+AAVGNGRELVADLDEALTGWRERLTARRDAAVWRALAVIIAQPAVTVDHLAQALGVSRPA
+AQRAVDQLVEAGALQAVSAQRRNRVWLATEVLTCLDEFAARAGRRG
+>TT9_LFPAFLNI_02194
+MSNDPRPTPWAVGWEQRPWTADPHDAGLRSRRARVRAAGPYRAALPARIARLGLDLPSDL
+ATEVEEATAAVVRFDAEITHALPGFTGEIAPIDAVLLRTESASSSQIEHISAGARALALA
+TLGERTRPNAALVAANVRAMGAASRLAADLDEPALLAAHRALMDGQEHARPGAYRDAQGW
+IGGGAPTPHTAQFVPPHPERLRAGMDDLFAYLRRTDVPALVQAAIAHAQFETIHPFADGN
+GRTGRVLVHAVLHRAGAITRMGVPLSAGLLTDTAGYFDALTAYRDGDPAPIVRRFAQAAL
+AAVGNGRELVADLDEALTGWRERLTARRDAAVWRALAVIIAQPAVTVDHLAQALGVSRPA
+AQRAVDQLVEAGALQAASAQRRNRVWLATEVLACLDEFAARAGRRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001983.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001983.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c4a6fddbda4e7d5f4133a67b127f881c979770e4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001983.fa
@@ -0,0 +1,33 @@
+>KD337_NAFOICDF_00423
+M------------------GAMTDPTSRALRLLGLLEARAVWTGAELAERLGVTSRTLRR
+DVDRLRTLGYVVEADPGPGGGYALGRGQVVPPLLLDEDQAVAVTLALTRAAHAGDGVAAE
+SALRALATLDALMPADLRHRLEGLRAASTVGAGD--GPPVG-PELLACADAVRRRVRLTF
+GYRDRRGA---------RTERRVEPHRLVARARAWLLVAHDLDRDDWRTFRVDRIVDPAV
+GTWA--FTPRPDLAEALARL-----DEPTPPEAWRHRVSVRVHAPLESVRASLPATAGRL
+TALDARTTAFETGADDPAEAARWLALLGHEFEVLGDEPVRAAVAALADRLHRSTVQVLR-
+---G
+>KD337_NAFOICDF_00644
+MASPCRRFRTPNVRNPRHAGVMADTSARILRLLSLLEARVEWPGGDLAERLGVSARTVRR
+DIDTLRELGYPVEAVPGPGGGYRLGAAGKLPPLVLDDDQAIAIALALQTAPATV-TGIDD
+AVARALTTLRQVMPARLRAASEAFEVTALRNYWEFSAPPIDVATLQVVGSAIRTSSCLRF
+DYADPDGRVPGPGDADFRPPHDVEPHHLVVWAGRWYLVARDRNHGTWGTYRVDRIRPKTP
+AGRP--FTPTPLDPDDLNRLVVQNPDRGDTPGQWQCVGTATLPLPADVVARWAPGGSA-V
+APIDRQSCRLTIGGWSWAGVAGLFITFDTDLTNVEPSGLRDALATIRRRLEPAPLGGLRP
+TLQQ
+>KD337_NAFOICDF_01784
+------------------------------------------------------------
+------------------------MPSVKIPPLLLDADEVCSLVTGLLLLEA---GGVNE
+AA-TVRTKLEQLLPPKLRQQAAATALATQVITPV--AAPVDWRLLGVLAEAVAQGQNLRF
+TYTDQHSK---------VSERHIRPYRHALRKGAWYLIAYDIQRTDWRLFRLDRIQHATP
+EPTATGIDVPVFPSPSIEEWLTTDFGR-------------------------LPASAG--
+------------------------------------------------------------
+----
+>KD337_NAFOICDF_01822
+------------------------------------------------------------
+------MLGYDIQSHPGPGGAYVLAPSIKIPPLLLDADEVCALVTGLLILEA---GFADD
+SATTVRAKLERLLPPSLRQRAVAAAAATQVLTAT--HA-FDWPALGMIADTIAVGQHLGF
+AYTDQHGH---------ASNRIVQPYRQVLRHGIWYLVAYDTQREDWRLFRSDRVHEPEP
+RTPAPGYEAHPFPDESIHRWLITDFGR-------------------------AAQHVN--
+------------------------------------------------------------
+----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001984.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001984.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7e8764de4cca6cb8cc310688b7fc639512c33a9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001984.fa
@@ -0,0 +1,33 @@
+>KD337_NAFOICDF_00661
+MD----------------------------------------------------------
+-TPVMASLPAGVITL--RDARR------SQTREVTL--------EAFEIA--------VH
+PVHDQGSGLPWAPFTWFD-----AVAYCNELSRASGLQEAY-----------TWQ--GRT
+VDW--DTAADGYRLPTEAEWEYACRAGT-TSPTYGLVEDIA------------------W
+TSL---DDVDSPQPVGSKAPNAWGLHDMLGNVW-----EWCWDYADPARYGD-------Y
+RSLRGGGWADEPWSVRASVRRGSAPNAVLEDV-GLRLARGPVGSPGQAQGWSHEADRQRA
+AIRGPLPVGWTPLWEIAR
+>KD337_NAFOICDF_00698
+MN----------------------------------------------------------
+-QPSMATLSSGKITL--RDARR------RTTRDVEL--------EPFEMA--------VH
+PLHDRSTGRPLTPLTWFE-----TINLCNELSKAEELQPAY-----------TRAGGGRS
+VTW--NTSADGYRLPTEAEWEYACRAGT-TSPTYGPLEDIA------------------W
+ISL---DHLEGPQPVGMKKANPYGLHDMLGNIW-----EWCWDYADPARYGD-------Y
+RSLRGGGWADEPWSVRASVRRGNAPDAVLEDV-GLRLARGPVGSPGQAQGWSHEADRQRA
+AIRGPLPVGWTPLREIFA
+>KD337_NAFOICDF_00722
+MN----------------------------------------------------------
+-QPSMATLSSGKITL--RDARR------GTTRDVEL--------EPFEMA--------VH
+PLRDRSTGRPLTPLTWFE-----TINLCNELSKAEELQPAY-----------THAGDGRS
+VTW--NTSADGYRLPTEAEWEYACRAGT-TSPTYGPLEDIA------------------W
+TSL---DHLEGPQPVGMKKANPHGLHDMLGNIW-----EWCWDYADPARYGD-------Y
+RSLRGGGWADEPWSVRASVRRGNAPDAVLEDV-GLRLARGPVGSPGQAQGWSHEADRQRA
+AICGPLPVGWTPLREIFA
+>KD337_NAFOICDF_01398
+MQGAIDDDMMLTGAVDEWRFIVQTLADRLDQAAHAAGTPVSTAADVDAGTPAGTVSSDHQ
+AGPDMVVIPAGTYTAGSTDAEHEAWGVPENRRDFELPQREVTIAEPFALGRTEVTVEQFQ
+AFVDDTGYQVCGGSRWWDPEDPSAMTFNPELSY---LDPGFEQTPDSPSVALTRQDAQAY
+VDWLSETTGESDRLPTEDEWEWAARGGADTAFFWGDTLDEAARYANTYDTVSQAVNGFPW
+ESLSVTDRFAHTAPVGSFEADGFGLYDVTGNARAFMADDWIEDLSGTAGDGSVHDGPVPF
+PVVRGGAWNYQPQNLRLDYRGAYLSAEVATTMFGFRVVRD--------------------
+----------------LG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001985.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001985.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1babec6fea8861b0b271cd2018f29cc2b983eb0d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001985.fa
@@ -0,0 +1,17 @@
+>KD337_NAFOICDF_00674
+M-AYLFLIIAIIFEVAGALSLR-MATSGSKKKGLWLLAVLGGYGIAFFGITMALVEGLAL
+GVAYGIWAASGVALTAVLSRILFKEPLTKVMAAGIGLIIVGVLMIELGAAH---------
+---
+>KD337_NAFOICDF_00675
+M-KWVFLAGAIALEVTGSLSLK-AAVDAP---GFFALVAV-GYIGAFTLLAGALKQGMPL
+GVGYGIWGAAGVALTAILSAVIFGEPLTALMTLGIAVVIGGVLCVELGSQAATKKRE---
+GTV
+>KD337_NAFOICDF_02225
+M-QWLFLAGAVLSEVAATLCLRVAAAGRR---GFYAAVAV-GYVLAFVFLTLALRAGIGL
+GVAYGIWAAAGVALTAIASHVLFKEPLTRTMILGILLIMAGVLVIEIGSSSH--------
+---
+>KD337_NAFOICDF_02226
+MTKWFLLAGAVGSEVIASLSLK-AALTHP---ALYAVVLL-GYVSAFTFLTLVLKRGMAL
+GVAYGIWGALGVAATAVLSAVLFDERITAMMGIGIALVIAGVLMVELGSHHTPDTDEQQA
+GAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001987.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001987.fa
new file mode 100644
index 0000000000000000000000000000000000000000..bd1473d30881c179f3f3acce53aa640247d373e5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001987.fa
@@ -0,0 +1,13 @@
+>AS2_ACLBLIBL_00145
+MTHANAPLTPTGRLRMVHRHLIDGIPQAHVAAEFRVSRPTVATWVARYRAKGKAGLQDRS
+SRPHRSPARLDPAIVAELEALRRAEKWSARRIHHHLVGEGHQVCLRTVGRWLHRLGISRL
+RDLAPTGEDLRQRPQKITARGPGHMVHLDVKKIGRIP
+>SA211_MHAAABBN_01119
+MTHANAPLTPTGRLRMVHRHLHDGIPQAHVAAEFRVSRPTVATWVARYRAQGEAGLQDLP
+SRPHRSPAQLDPVLVAQIHALRRERKWSARRIHHHLVSEGHRVCLRTVGRWLHRLGIS--
+-------------------------------AYG--T
+>SA211_MHAAABBN_01966
+MTHANAPLTPTGRLRMVHRHLHDGIPQAHVAAEFRVSRPTVATWVARYRAQGEAGLQDLP
+SRPHRSPAQLDPVLVAQIHALRRERKWSARRIHHHLVSEGHRVCLRTVGRWLHRAGLSRL
+RDLTP-------------GQVPGSGVTV-FEAVG--A
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001989.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001989.fa
new file mode 100644
index 0000000000000000000000000000000000000000..facfc89a4e7d50d1ba797dff6025e59c53df5f7c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001989.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_00200
+MA-HPAPPSDPPLAASPATAVDTAADDGAPATSRLSVRLEDVGRTFDTPHGAHTVLRDVS
+LTIAPGEVLAILGASGSGKSTLLRSVGGLDTAHSGRVLLGESPVTAYDPRVAVGFQEPRL
+LPWRTIRRNIALGLPRGTSRAEGEARVERLMELVGLTHAAERRPREVSGGMAQRASLARA
+LARRPEVLLLDEPFGALDALTRMKMQDLLLDVHAKVSTTVLLVTHDVDEALQLADRILLL
+-----GPDEDGRPGATVQRLLTVPGERPRERGDDALAHLRTELFAGLGVDLHSAAGAAR
+>KBS0714_MOLHKGIG_00206
+MSVH---------APSRATASTPVRDEDRHS---LDVVFRGVGRTFPTADGPRVVLRDVD
+LTVAPGEVLAVIGASGCGKSTLLRAVAGLDPDFDGELLIDGSPVRPYDERTAVGFQEPRL
+LPWRTLRRNVELGLPRELDRAAGRDRVQELLELVGLAPFAEHRPREVSGGMAQRASLARA
+LARRPGVLLLDEPFGALDALTRLKMQDLLLDVHAATGTTVLLITHDVEEALQLADRVLLL
+ARDVPAPDGGARPGATVGRIVDVPGARPRDRADARLARLRAELLEGLGVESHA-----R
+>KD337_NAFOICDF_00138
+MSVH---------APSRATASTPVRGEDRNS---LDVVFRGVGRTFPTADGPRVVLRDVD
+LTVAPGEVLAVIGASGCGKSTLLRAVAGLDPDFDGELLIDGSPVRPYDERTAVGFQEPRL
+LPWRTLRRNVELGLPRGLDHAAGRDRVQELLELVGLAPFAEHRPREVSGGMAQRASLARA
+LARRPGVLLLDEPFGALDALTRLKMQDLLLDVHAATGTTVLLITHDVEEALQLADRVLLL
+ARDVPAPDGAARPGATVGRIVDVPGARPRDRADARLAQLRSELLEGLGVESHA-----R
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001991.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001991.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2fac3ffab09c0c1d8a39130c13c192d91a521a1c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001991.fa
@@ -0,0 +1,24 @@
+>AS2_ACLBLIBL_00211
+---MPYAVRVITGDLKTKVDRVWN---TFWTGGISNPLEVIEQMTYLLFLRRLDELHTAQEKRAAFMNGPIEDPKFTPEQ
+DHLRWSRFRDLDPDTMFLTVSDAVFPFLREYGRQVGGEDSTYSAHMKDARFTIPNAGLLATVVDLV--DQLPMADRDTNG
+DLYEYLLSKLASSGVN--GQFRTPRHIIDLMVRMTAPTPADEICDPACGTAGFLVAASEFIREEHPQVLVDAQQREHFHR
+SMFHGYDFDSTMLRIGSMNMLLHGVESPD----IRYRDSLSEGASADAEKYTLILANPPFTGSLDYDSTAADLQRVVK--
+-----------TKKTELLFMALFLRLLKPGGRAAVIVPDGVLFGFTKAHREIRRLLVEEHLLEAVVKLPSGVFKPYA-GV
+STAILFFTKT----GTGGTEDVWFYDVRADG-FSLDDKRNRVEANDLPDVLERWRNRGAEADRARTEQSFLVPRQEIVDN
+GYDLSLNRYKEIEFEETEHRDPLEIIAELEQLDDEIRAGLAELKEML----------------R
+>KBS0714_MOLHKGIG_00038
+----------MTVDARRLVDKLWSYVHVLRDDGVG-VLDYTEQLTYLLFLKMAHERAT----------RPLKPEQVLPEQ
+--YSWQRLMDARGQDLEAVYTGMLQGLSREPG-VVGTIFRKAQNRIQDP------AKLRRIIVDLIGAQQWSQSGTDLNG
+DAYEAILARSASDGSSGAGQYFTPRALIEAIVDAVDPTVEDTVVDPAAGTGGFLLVAHDHASREASS--MTPTQREKLRD
+DFVHGYELVDATARLAAMNLLLHGMGRYDGDSLIDVRDSLT---SAPSRRWSVVLSNPPF-GRKSSMTVVGDDGREVRED
+REIVRQDFVATTSNKQLNFVQHIMTILDVNGRAAVVLPDNVLF-EGGAGEVIRRKLLTDFHLHTLLRLPTGIF--YAQGV
+KANVIFFDKKPARPGEVWTDAMAVYDLRTNKHFTL--KQSPLRRADLDEFVSGYRRPEAQVGERWKTFTY---DELIARD
+KANLDITWLRDETLEDMDNLPSPDVLAR--EIVEDLTAALAEFEAVAVSLEEQLSSADGTQEDR
+>TT9_LFPAFLNI_00188
+MHPIAYADPVITGELKTKVDRVWN---TFWTGGISNPLEVIEQMTYLLFLRRLDELHTAAQRRAEFTGRPIEDAKFAPHQ
+DHLRWSRFKELDPDTMFLTVSDSVFPFLREYGRQVGGEDSTYSSHMKDARFTIPNAGLLATVVDLV--DQLPMADRDTNG
+DLYEYLLSKLQSSGVN--GQFRTPRHIIDLMVRMTAPTPADEICDPACGTAGFLVAASEFVREEHPEALVDATQRRHFHR
+SMFHGYDFDSTMLRIGSMNMLLHGVESPD----IRYRDSLSEGASADAEKYTLILANPPFTGSLDYDSTAADLQRVVK--
+-----------TKKTELLFMALFLRLLKPGGRAAVVVPDGVLFGSTKAHREIRRLLVEEHLLEAVVKLPSGVFKPYA-GV
+STAVLFFTKT----GTGGTEDVWFYDVQADG-FSLDDKRNPVEANDLPDVLERWRNREGEAGRARTEQSFLVPKQEIADN
+AYDLSLNRYKEIEFEEAEHRDPLEIIAKLEKLDDEIRAGLAELKEML----------------K
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001994.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001994.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5770fc53338cb92a2f278549fdd62da4108f1901
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001994.fa
@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_00472
+MTTKAGLIAAASHALQNGPQLFARVEDGGVVIGGRGGEVVPDSTGLYAVVAQDPDAVWAE
+LRLDTSVSRSDVLYIGKAEGSLRARLERKHFADGGTAHSTLRRTLAALLVERLGLEPVAV
+ASAGRFTLTQESGEQLTTWMRCHLAVRVWQAPAGFAEVTPLGGIEKPVIDTHTPPLNLTY
+GGTSPEAQQLRRRIREARTAMAEQAKRGVDVVEADSSARATVGDLFRRRPRQYGLRGSVG
+LWEELAERLDDTPMPTSEHELGRLLHDALERSLEGAEPYDEDKVNVERFNRGGMSQGLVH
+LPWWEDQAIPLLLDRWGAWADTQGLLGPEDYIGSW
+>KBS0714_MOLHKGIG_02258
+MTTKVGFIAAASHALQNGPQLFARVEDGGVVIGGRSGEVVPDSTGLYAVVAQDPDAARAE
+LRLDTSVSRSDVLYIGKAEGSLRARLERKHFADGGTAHSTLRRTLAALLVDRLDLEPVAV
+ASAGRFTLTPESGEQLTTWMRRHLAVRVWQAPAGFAEVTPLGDIEKPVIDTHTPPLNLTY
+GGTSPEAQLLRQRIRKARTAMAEQAKRGVDVVGADSSARATVGDLFRRRPRQYGLRGSVG
+LWEELAERLDDTPMPTSEYELGRLLRDALDRSLEGAEPYDEDKVNVERFNRGGMSQGLVH
+LPWWEDQAIPLLLDRWGAWADTRGLIGPEDYIGSW
+>TT9_LFPAFLNI_02189
+MTTKAGLIVAASHALQNSPQLFARVEDGGVVIGGRSGEVVPDSTGLYAVVAQDPDAARAE
+LRLDTSVSRSDVLYIGKAEGSLRARLERKHFADGGTAHSTLRRTLAALLVDRLDLEPVAV
+ASAGRFTLTPESGEQLTTWMRRHLAVRVWQAPAGFAEVTPLGDIEKPVIDTHTPPLNLTY
+GGTSPEAQLLRQRIRKARTAMAEQAKRGVDVVGADSSARATVGDLFRRRPSQYGLRGSVG
+LWEELAERLDDTPMPTSEYELGRLLRDALDRSLEGAEPYDEDKVNVERFNRGGMSQGLVH
+LPWWEDQAIPLLLDRWGAWADTRGLLGPEDYIGSW
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001997.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001997.fa
new file mode 100644
index 0000000000000000000000000000000000000000..57b9b55258ecc8c632f1aea2a77097f6072c7e45
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001997.fa
@@ -0,0 +1,28 @@
+>AS2_ACLBLIBL_00533
+MTSTTPRAALRRPLGLTLTAAFSALALTACGGGGGTAASSSPAAGGSASSSAAGGSDQGA
+ASSSSAGQDLTEAGAATITMWVDQNRQKPLQAVAEDFKEDTGITVELVVKDNSKMKDDFI
+TQTPTGEGPDVIVGAHDWIGSLVQNGTIAPLELGDTADAFSETSVQAVTYDGQTWGVPYS
+VENLAILRNTALAEETPASFDEMIAEGQKAVDAGDADYPFVVGLDPVNGDPYHLYPFQTS
+MGAPVFEQQEDGSYDVSSLAMGGAEGQAFAEKLAEYGESGVLNPNMTADIAKEQFNAGKA
+AYFITGPWNVDEAEEAGVDFAVEEIPSMGDQPAQPFVGVNAFFVSAESENQLAANEFVVN
+YLSSEEAQDALYAEGKRPPALTASFEKAAVDETVKAFGEIGEDGVPMPAAPEMGAVFEFW
+GGAEMSIIKGEGDPAQTWDKMISDIEGRIGQ
+>KBS0714_MOLHKGIG_02211
+MQSTTTGGLFRRPLSLTLTAAFSALALTACGGGSSAPASSSP----------AGATEQGT
+ATASPS-QDLSEAGASTITMWVDQNRQEPLQAVAEDFKEDTGITVELVVKDNSTMKDDFI
+TQNPTGEGPDVIVGAHDWIGSLVQNGTIEPLELGERAGDFVESSVQAVTYEGQTWGVPYS
+VENIAILRNTELAESTPASFDEMIAEGRKAVDAGEAEYPFVVGLDAVNGDPYHLYPFQTS
+MGAPVFKQAEDGSYDTGSLAMGGPEGEAFAEKLAEYGESGVLNPNMTADIAKEQFNSGNA
+AYFITGPWNIEEAEAAGVDFEVEAIPSMGDQPAQPFVGVNAFFVSSESENQLAANEFVVN
+YLSTEAAQDALFAEGKRPPALTASFDKAASDETVKAFGEIGENGVPMPAAPEMGAVFEFW
+GGAEMSIIKGEGDPVQTWQKMISDIEGRIGQ
+>SA211_MHAAABBN_01924
+MQSTTTGGLLRRPLSLTLTAAFSALALTACGGGSSAPASSSP----------AGATEQGT
+AAASPS-QDLSEAGATTITMWVDQNRQEPLQAVAEDFKEDTGITVELVVKDNSTMKDDFI
+TQNPTGEGPDVIVGAHDWIGSLVQNGTIEPLELGDRAGDFVESSVQAVTYEGQTWGVPYS
+VENIAVLRNTELAESTPASFDEMIAEGQKAVDAGEAEYPFVVGLDPVNGDPYHLYPFQTS
+MGAPVFKQAEDGSYDTGSLAMGGAEGEAFAEKLAEYGESGVLNPNMTADIAKEQFNSGNA
+AYFITGPWNVEEAEAAGVDFEVEAIPSMGDQPAQPFVGVNAFFVSSESENQLAANEFVVN
+YLSTEAAQDALYAEGKRPPALTASFDKAASDETVKAFGEIGENGVPMPAAPEMGAVFEFW
+GGAEMSIIKGEGDPVQTWQKMISDIEGRIGQ
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001999.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001999.fa
new file mode 100644
index 0000000000000000000000000000000000000000..0a7798162505b1f37ca55a31e159c9d08c65a89b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0001999.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_00551
+MTTTIQDPWAQPTPAGAYDDLLVRALPVTRAQRRWEPADGPMPSLFVSHGAPPTLDDPQW
+LADLFDWAQSMPKPRAIVIVSAHWEDAPVAISSAAAGTPLVYDFGGFHPRYYELQYATPD
+ATDLAARVAGVLG-QGRPGSVHQ-TGRGLDHGAYIPLMAMYPDADVPVVQVSMPSMDPSA
+LLDLGVKLRSLREEGVLVIGSGFMTHSFAAMRDPRLFGHVDAFDKWAAEMTHAGDVDSLI
+GYLDKAPGARIAHPTADHYVPLLLTMGAANDPSSARTVFDRFVFSNHIRSFSVD
+>KBS0714_MOLHKGIG_02191
+M-----------------------------------------------------------
+------------------------------------------------------------
+------------G-----------------------------------------------
+------------------------------------------------------------
+-----------GRPAAGLDPPQTAQSGHADDPSSARTVFDRFVFGNHIRSFSVD
+>KD337_NAFOICDF_00474
+M--TLADPWAQPTPAGAYDDLLARALPLTRRQKLWEPSDGRMPALFISHGAPPTLDEPQW
+LNDLFEWAQTMPKPRAIVIVSAHWENAPAAISASAAGTPLVYDFGGFHPRYYTLRYDTPD
+ATDLARRLAGVLGAQGQ--EVHQHTDRGLDHGAYIPLMAMYPDADVPVLQVSMPSQDPAD
+LLRLGERLRELRDEGVLVIGSGFMTHSFAAMRDPRLFGHVDAFDTWAAEMAHAGDVDALM
+GYLDRAPGARIAHPTADHYVPLLLTMGAAHDPSTTRTVFNRFVFSNHIRSFTVD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002000.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002000.fa
new file mode 100644
index 0000000000000000000000000000000000000000..142332597fadf8c6695d84344ee6445f11ff88a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002000.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_00570
+M-PDL------QPVPTLA-------------------------------DVPELGDGVVT
+LHPADARHAPALGALLRDADVQVLTGSVHSTAQAAAIARGEAHAGPTPERLAEIYAGWAA
+DEDRAVWTVEAEGAVLGEILLMDLDAGNRACGLRLWLAGAGRDRGVGTRALTLVLEHAFT
+TVGLHRVGLEVYDHNPRARHVYARLGFVHEGTLRQALLLDGEWIDCHVVGLLAHEWHARR
+AAPSSD
+>KD337_NAFOICDF_00497
+MTPDPSVDASPQAAPTVAVTADPGRAPADDAGPDERRPSEPTRVQALFYSPPELTDGRIT
+LRPAGADDAAALYPLLQDRETLLLTGSTHSSARADRIVSGEIQPWGSPEKLAEDYDAWSV
+ADDRAVWVIEEDATIVGEMVLMDLDPPNISCALRLWITGA-TDRGIGTAALTLALDWAFR
+TVELHRVSLDVFEHNPRAIHVYEKLGFVREGTMREALWQDGRWIDSLGMGILRREWLARQ
+DG----
+>KD337_NAFOICDF_00659
+M-VD--------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--------------NLRAVQLYLQCGFVVEGLRRTSLIRDGGSVDEYAMAQLVLSSGSES
+AVVDK-
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002001.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002001.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4a44bd15b3c2818c99ee7accf619652bdb8b855c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002001.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_00591
+M-SEHTATPARAGSPAWIDYSATDFAAQQAFYEALFGWTFTDSGEEFGHYRMIAKDGASV
+GGAMDADQMTAMTGEAPAPAAWTVYLRTEDMAATLAAVREHGGTVLVDAMPVGDLGTMAM
+VAGPGGEAVGFWQADTFEGHDLPLTPGTSVWFELLSTRFDEAVEFYQAVAGWQPTLMGDD
+GAPEDGHAAADAEDAAQDGPRYATDHPGEGATAGLCDATQWLPANAVGYWRMYIAVEDTD
+RALEVIREHDGKVLDGPQDSPFGRVTTVQDPAGATFQINEALPGQE
+>AS2_ACLBLIBL_01322
+M-----SIT--PGQPVWIDLGTTDLERSKAFYRDLFDWNFSDTGGEFGHYHMVDA-GVPV
+GG-LGPNVDAEGNIDASMPVWWTVYLKVEDVDATLAAVREHGGHVHVEPMQIGDMGRMAI
+VAAPSGAAFGVWEVGSFEGFDTEGRPGTPVWFEALTKDFDADAAFYAAVLGWKNVPM-RE
+GSSDE---GAAEEDGA--GMRYVTDAAGDDASAGLFDAAAFLPAEVPSHWRVYFAVPDTD
+AAVEKVLALGGAVVEPAQDSPYGRVAAVADDLGGTFMV------IA
+>KD337_NAFOICDF_00514
+MSAQHTAIP--SGSPIWIDYSAGDFATQQAFYSALFGWTFQDQGEDYGHYTMVRAGDAVI
+GGAMDGELSAQFSGGPVQPAAWTVYLKTEDIARTLGLVAEHGGQVIVEAMPVGELGSMAL
+AMTPGGEAVGFWQPGEFSGHDLPLTPGTSVWFEVMSKDFAADAEFYRAVCGWDVVPMGPD
+GQQDD---AAPDEDGM---PAYATDHTGEQATAGLCDAAAWLPEAVPSHWRVYFQTTDMD
+ASVKVVEEKGGRIVDGPMDSPFGVVASVVDPAGATFQLNQP-PARG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002002.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002002.fa
new file mode 100644
index 0000000000000000000000000000000000000000..821c380fcf868bcd8cc2a588c1e1a46c9627dca2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002002.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00642
+MTRTLEEIWPPYGLVVEAGDLRMTALREADVPEVLDVVAGGIHDPSWTPFLFPWTDAPAE
+EMPANYLRFYASTLTRTVDGDVSLELVVRRNGQVIGMQGMNGPDVAGTRRLETGSWLGLP
+FQGQGLGTRMRRMMCALAFDGLGLDAVTSSAWEDNAASRRVSEKVGYLETGRGQAERRGV
+PTGEVFFELRPEGFVRGDEPVRIMGAEELRRFLGLG
+>KBS0714_MOLHKGIG_00176
+MTRTLEEIWPPYGLVVEAGDLRMTALREADVPEVLDVVAGGIHDPSWTPFLFPWTDAPAE
+EMPANYLRFYASTLTRTVDGDVSLELVVRRNGQVIGMQGMNGPDVAGTRRLETGSWLGLP
+FQGQGLGTRMRRMMCALAFDGLGLDAVTSSAWEDNAASRRVSEKVGYLETGRGQAERRGV
+PTGEVFFELRPEGFVRGDEPVRITGAEELRRFLGLG
+>KD337_NAFOICDF_00050
+MTRTLEEIWPPSGLVVEAGDLRMTALREADVPEVLDVVAGGIHDPSWTPFLFPWTDAPAE
+EMPANYLRFYASTLTRTVDGDVSLELVVRRNGQVIGMRGMNGPDVAGTRRLETGSWLGLP
+FQGQGLGTRMRRMMCALAFDGLGLDAVTSSAWEDNAASRRVSEKVGYLETGRGQAERRGV
+PTPEVYFELLPEGFVHGDEPVRITGADELRRFLGLA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002005.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002005.fa
new file mode 100644
index 0000000000000000000000000000000000000000..36af8a6da8a587acde84e91ed5ceff26af886e5b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002005.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00731
+------------------------------MEPEALYEDKASGKSDDRPHLAACLKALRA
+GDTLLVWKLDRLGRDLRHLVNIVHELTERGVGLKVLTGQGAAIDTTTASGKLVFGIFAAL
+AEFERELISERTKAGLASARARGRKGGRPYKMTPAKIRLAMASMGNKDTNVGALCKELGI
+TRQTLYR----HVSPTGELREAGQKVLAQRR
+>KD337_NAFOICDF_00679
+MGHLLGYARVSTTD--QDASLQIDALGAAGC--YRVFVDTMSGSLQHRPELDKLLDQLRP
+GDTLVVWRLDRLGRSIRHLIDQLHALAERGIGFRSLQ---ETIDTTSPGGRLVFHVFAAL
+AEFERDLIKERTNAGLAAARARGRTGGRPSRLSADQVRTARRLYEQQDMTVAQIGDVLGV
+SRTTIYRTLAKHAEPVARRRAKPSPTM----
+>SA211_MHAAABBN_01775
+M-------RVSKADGSQATDLQRDALLEAGVEPEALYEDKASGKSDDRPHLAACLKALRA
+GDTLLVWKLDRLGRDLRHLVNIVHELTERGVGLKVLTGQGAAIDTTTASGKLVFGIFAAL
+AEFERELISERTKAGLASARARGRKGGRPYKMTPAKIRLAMASMGNKDTNVGALCKELGI
+TRQTLYR----HVSPTGELREAGQKVLAQRR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002012.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002012.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b5c97cc6364ef1164d1f9e146426c56f5991723b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002012.fa
@@ -0,0 +1,30 @@
+>AS2_ACLBLIBL_00799
+MTRL------SR-----FARSYPLVAVTLAVLALVLGLHAAGLDAAAAVIATVYVAGHIAWAAVGMVREVLRGHFGLDIL
+AVVAMTASLLVGEHLAALIIVLMLTGGEALEDFAAARARRELTALLEKAPQTAHLLGADGEAREVPAAQVRPGDELLVKP
+NEVVPVDAELLSAEAA------FDESSLTGESLPSAKAAGDAVLSGSVNGTAAVRVRATAAAADSQYQRIVELVEQAHEQ
+KAPVVRLADRFALPFTAVSLAIAGVAWWASGDPVRFAEVLVLATPCPLLIAAPVAFLGGMSQASRRGVIVKGGGVLESLA
+HARAVAFDKTGTLTHGRPRLQRVEPAEGFTADAVLAAAAAAEAYSTHVMAEAVVRAADDAGLARLSARGGTEEGTRGVRA
+LVRGTDGGAGAGTGTDTHEPGAAVEVRVGKLAFVREVAPDAPEARFAPGETAAYVSVDGRHAGTLVLADALRENAGETVA
+ALRAEGFERAVMLTGDNEHTARSLAAEAGLDDVAHSLLPEDKVRLLAELQPRPVIMVGDGVNDAPVLAAADVGIAMGARG
+SSAAGESADVVITRDDIGRTVEAVRIGRHTYRIALQAVLLGVALSVGLMLVAAFGHIPAVAGALTQELVDLACILYALRA
+-RTSPRGTPQ-GAAARARGRAPQEAARA
+>SA211_MHAAABBN_00539
+MPVSAPSPSSSRPAVLGFAARYPWVLATLVVVALTLGLHLAGAEDPARWIASAYALVVAAWTSVGMVRDLMRGHWGVDIL
+AVTAIVATVLVGEHLAAVLVCLMLTGGEALEDYAAGRARRDLSALLDRAPQRAHRLGPDGSVEDVPVEEVRAGDRLLVRP
+AEVLPVDGTVASAEDGGEVAVDLDESSLTGESLPVTHRTGSAVMSGALNGTRAFVLEATASAADSQYAAIVSLVQQAAES
+RAPMVRLADRYAVPFTAVAYLIAGLAWWLSQDPVRFAEVLVVATPCPLLIAAPVAFLGGMSRAATSGVIVKSGGTIEALG
+SVQTVGFDKTGTLTAGRPELVGVRPAAGFAQDELLRLAASAEQYSVHVLADAIRAAAEERGLSLATAQDATEEATHGVVA
+VLEGR-------------------RVVVGKRAYVTQAAPDTVTADLAPGQSAVYVAVDGAFAGVLLLADRIRPESAATVQ
+ALHRLGARQVLMLTGDAEATGRHIAREAGIDEVHADLLPADKVRLLSERPERPVMMVGDGVNDVPVLAAADVGVAMGARG
+STAASESADVVVLADDVSKVAVAVAAGQRTLQVATQSIWVGIALSLVLMVIAATGAIPALVGALFQELVDVVAIVNALRA
+MKPGPHEAERLGDLAAAPARGERQAVSA
+>TT9_LFPAFLNI_00776
+MPVSAPSP--SRPAVLGFAARYPWVLATLVVVALTLGLHLAGAEDPARWIASAYALVVAAWTSVGMVRDLMRGHWGVDIL
+AVTAIVATVLVGEHLAAVLVCLMLTGGEALEDYAAGRARRDLSALLDRAPQRAHRLGPDGSVEDVPVEEVRAGDRLLVRP
+AEVLPVDGTVASAEDGGEVAVDLDESSLTGESLPVTRRTGSAVMSGALNGTRAFVLEATASAADSQYAAIVSLVQQAAES
+RAPMVRLADRYAVPFTAVAYLIAGLAWWLSQDPVRFAEVLVVATPCPLLIAAPVAFLGGMSRAATSGVIVKSGGTIEALG
+SVQTVGFDKTGTLTAGRPELVGVRPAAGFAQDELLRLAASAEQYSVHVLADAIRAAAEERGLSLATAQDATEEATHGVVA
+VLEGR-------------------RVVVGKRAYVTQAAPDTVTADLAPGQSAVYVAVDGAFAGVLLLADRIRPESAATVQ
+ALHRLGARQVLMLTGDAEATGRHIAREAGIDEVHADLLPADKVRLLSERPERPVMMVGDGVNDVPVLAAADVGVAMGARG
+STAASESADVVVLADDVSKVAVAVAAGQRTLQVATQSIWVGIALSLVLMVIAATGAIPALVGALFQELVDVVAIVNALRA
+MKPGPHEAERLGDLAAAPARGERQAVSA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002013.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002013.fa
new file mode 100644
index 0000000000000000000000000000000000000000..81d530272056afeff4298492ca9fdd4720c36709
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002013.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00809
+MAD-RPAVIDHPDYFLLDSDLTDAQRALRDRVRDFGREQVLPIINEWWEKAEFPEPLLPG
+LADLGIIGTYIEGYGCPGMSRIEAGLVAREMGRIDGSVNTFLGVHSNLCMGSIYILGSDE
+QRQRWLPAMAKLEKTGAFALTEPKHGSDSVSLETSARRDGDEWVITGHKRWIGNGHAADV
+VVLYARDEADGEVKAFVVEKQEDGSFPAGYNPTVITGKVGKRAILQADIVIENLRVKEEN
+RLVNCESFAGVNRVLKATRGGASWEAVGHGMAAFEIAAAYALEREQFGAQIGGYQLVQER
+LATMLTDLTTMQLMCVRMAELQERDELTLAMASMVKMHTSRKALDMTRTARDIVAGNGLL
+LERHIGRHLTDMEVVSTYEGTDSMQALIVGRDITGISAFTRSRRKS
+>SA211_MHAAABBN_02304
+MSETRSGVLPDHDIYLLDDELTEEQREVRDRVRAFVDAELMPVINDYWERAEFPFELVPK
+LAELNVAGTVIEGYGCPGMSRMAGALVSMELARGDGSFNTFFGVHSGLAMGSINAFGSDE
+QKERWLPRMARMEMIGAFALTEPDHGSDSVALETTARREGDTWVLDGAKRWIGNASYAHV
+IVIYARDVADGQVKAFVLEREPDTEFPAGFEPTVITGKIGKRAILQPDIVISGLRIPEAD
+RLPGCSSFKDVNRVLSTTRGGVAVETLGHAVAAYEAAVAYAGQRVQFGKPIAGHQLVQGQ
+LATMLADVTNIKLTCFRLLELQDQGRLTGPMASLAKMSAARQARRVTSMARDILGGNGLL
+LENHVARHLTDMEVVYTYEGTDSMQSLIVGRAITGVSAFA------
+>TT9_LFPAFLNI_00288
+MSETRSGVLPDHDIYLLDDELTEEQREVRDRVRAFVDAELMPVINDYWERAEFPFELVPK
+LAELNVAGTVIEGYGCPGMSRMAGALVSMELARGDGSFNTFFGVHSGLAMGSINAFGSDE
+QKERWLPRMARMEMIGAFALTEPDHGSDSVALETTARREGDTWVLDGAKRWIGNASYAHV
+IVIYARDVADGQVKAFVLEREPDTEFPAGFEPTVITGKIGKRAILQPDIVISGLRIPEAD
+RLPGCSSFKDVNRVLSTTRGGVAVETLGHAVAAYEAAVAYAGQRVQFGKPIAGHQLVQGQ
+LATMLADVTNIKLTCFRLLELQDQGRLTGPMASLAKMSAARQARRVTSMARDILGGNGLL
+LENHVARHLTDMEVVYTYEGTDSMQSLIVGRAITGVSAFA------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002016.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002016.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b2854807220b3ffaaa8db9adbe19811525c3fcb0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002016.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_00840
+MSGTLDRLIRILSSFDAERPAMTVAALARRADLPLPTAYRWVERLVGAELLQKDDDGLVR
+PGLRLWEMASRSAPSMSLARTAMPFLVDVQSVLRQNTQLAVLDDEGVLVLERLSSQGAVV
+NQAAVAGRLPPFTTSLGLVLLAHSPADVAERFIARHRRQLGVAVEHHPSEAGGAAPAGAR
+VRVTAPTEPHLRALLAGIRREGYAAVDGALDEEARGIAVPVTRADGTVVAALGAVVPCEA
+PYTPGVPPLLMTAARGIARAVGGDSH
+>SA211_MHAAABBN_01712
+----MDRLIRVRFAFDAERPVLTVAALARRTELPLATAYRWVDRLVRAELLQKDEDGVVR
+PGLRLWEMASRSAPSMSLARTAMPFLLDVQAVLHQHTQLAVLDAEGVLVLARLSSQGAVV
+NQADVAGRLPPFTTALGLVLLAHAPVETAERFIARHRDRLGAVVDHHPLESGRAVPAGVR
+ARVATPSEPRLRALLADVRREGYAAVDGALDEESRGVAVPVRGADGVAAAALGVVVPREA
+PYTPGVPPLLMTAARGIARGLGGHSH
+>TT9_LFPAFLNI_01940
+----MDRLIRVRFAFDAERPVLTVAALARRTELPLATAYRWVDRLVRAELLQKDEDGVVR
+PGLRLWEMASRSAPSMSLARTAMPFLVDVQSVLRQHTQLAVLDDDGVLVLARLSSQGAVV
+NQADVAGRLPPFTTALGLVLLAHAPVETAERFIARHRDRLGAVVDHHPLESGRAVPAGVR
+ARVATPSEPRLRALLADVRREGYAAVDGALDEESRGVAVPVRGADGVAAAALGVVVPREA
+PYTPGVPPLLMTAARGIARGLGGHSH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002017.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002017.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c9abc8189446ccf7b0c49325e805f941ff5b168c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002017.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_00841
+MTQQPVTRTRVGIVGGGPAGLMLSHLLSKQGIDNVVLESRDHETIANTHRAGILEQPSVD
+MLTGTGVDGRVKTVGDEHRGIFLRFDGESHALDFPELVGATVTLYAQNEVFVDLAAARER
+DGGDVRFETEVVEVLDIDSDTPGVRFRSVAGGEQGPVEELRCDILVGADGSRSTVRKALQ
+AGTEGKDYFTAYPFAWFGILAEAPKSSPELIYARSEHGFGLISQRSETVQRMYFQCDPAT
+RVEDWSDDRIWERLQKIVDGPDGLTLKTGPIIDKTVLGFRSFVRTPMDHRNVFLAGDAGH
+TVPPTGAKGLNLAFADVRVLFEALDSWASTGSRDLLDAYSDTVLARVWKAQNFSSWMTTM
+LHARPEASEFEDMRVRGELLNVVSSRFGQQYLAEQYTGWPHR
+>SA211_MHAAABBN_01711
+MTQPPVTRTRVGIVGGGPAGLMLSHLLARQGIDNVVLESRDPETIAHTHRAGILEQPSVE
+MLTDMGVDGRVRTVGDEHRGIILRFDGESHALDFPELVGATVTLYAQNEVFVDLAAARRR
+DGGDVRFETEVLEVLDVDSDTPGVRFRSVAAGEEGPVEELRCDILVGADGSRSTVRKALQ
+RDTEGEDHFHAYPFAWFGILAEAPKSSPELIYARSEHGFGLISQRSETVQRMYFQCDPST
+RVEDWSDDRIWDRLQRIVAGPDGFTLKTGPIIDKTVLGFRSYVRTPLSHRNVFLAGDAGH
+TVPPTGAKGLNLAFADVRVLAEALESWAATGSRDLLDAYSETALTRVWKDQNFSYWMTTM
+LHARPDASEFEDMRVRGELRNVVQSRYGRQFLAEQYTGWPSA
+>TT9_LFPAFLNI_01939
+MTQPPVTRTRVGIVGGGPAGLMLSHLLARQGIDNVVLESRDPETIAHTHRAGILEQPSVE
+MLTDMGVDGRVRTVGDEHRGIILRFDGESHALDFPELVGATVTLYAQNEVFVDLAAARRR
+DGGDVRFETEVLEVLDVDSDTPGVRFRSVAAGEEGPVEELRCDILVGADGSRSTVRKALQ
+RDTEGEDHFHAYPFAWFGILAEAPKSSPELIYARSEHGFGLISQRSETVQRMYFQCDPST
+RVEDWSDDRIWDRLQRIVAGPDGFTLKTGPIIDKTVLGFRSYVRTPLSHRNVFLAGDAGH
+TVPPTGAKGLNLAFADVRVLAEALESWAATGSRDLLDAYSETALTRVWKDQNFSYWMTTM
+LHARPDASEFEDMRVRGELRNVVQSRYGRQFLAEQYTGWPSA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002018.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002018.fa
new file mode 100644
index 0000000000000000000000000000000000000000..98ebed8254ee0b102fe12c12c40fac933f6b4abc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002018.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_00842
+MSDPVQKQDDDTFDNARVLDPAATQDSQEQISEEMAAVHGQASGETQPRLDFPPYRSSVF
+RHPTKSMAHADPESIELWSPAFGHRDVHQLESDLTVGQNGEPIGERIKVRGRVLDGQGRP
+VRGQLVEIWQANAAGRYVHKRDQHPAPLDPNFTGVGRTITDDRGFYEFTTIKPAPYPWKN
+HHNAWRPAHIHFSLFGTDFTQRMITQMYFPGDPLFSLDPIYQGITDQKARDRLVATYDHS
+VSEHEWNTGYYWDIVLTGSHRTWTEDEEGDH
+>SA211_MHAAABBN_01710
+MSIAAQAKDDDTFDSAHVLDPAATRDSQGQISEEIAAVHAQAQGETQPRLDFPPYRSSVF
+RHPTKSLVHADPETVELWSPAFGHRDVHPLEADLTVGQNGEPIGERIKVRGRVLDDDGRP
+VRHQLVEIWQANAAGRYVHKRDQHPAPLDPNFTGIGRTLTGADGTYEFTTIKPAPYPWKN
+HRNAWRPAHIHFSLFGTDFTQRMITQMYFPGDPLFPLDPIYQGITDQAARDRLVATYDHS
+VTSHEWNTGYWWDIVLTGSHRTWMEDEEGDH
+>TT9_LFPAFLNI_01938
+MSIAAQAKDDDTFDSAHVLDPAATRDSQGQISEEIAAVHAQAQGETQPRLDFPPYRSSVF
+RHPTKSLVHADPETVELWSPAFGHRDVHPLEADLTVGQNGEPIGERIKVRGRVLDDDGRP
+VRHQLVEIWQANAAGRYVHKRDQHPAPLDPNFTGIGRTLTGADGTYEFTTIKPAPYPWKN
+HRNAWRPAHIHFSLFGTDFTQRMITQMYFPGDPLFPLDPIYQGITDQAARDRLVATYDHS
+VTSHEWNTGYWWDIVLTGSHRTWMEDEEGDH
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002021.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002021.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2986277b430d667a3093fb006f71ffb4b13337c6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002021.fa
@@ -0,0 +1,31 @@
+>AS2_ACLBLIBL_01076
+M---------------TARADRDDVALIILGATGDLTSRLLLPGLAGALAAHDLPRITLV
+GSSHSE-HDTQEWQGIVREALKGTALDAAAVDDLVERAVWRTADATDADDLRALFAAARE
+AAGP-EAVPVLYFALSPGIARESVDALAGMDDLPDRLRLALEKPFGEDEASARELNAVLA
+DIVEEDRVFRVDHFLGESMVTALLGLRTANRLLGRVWDGRDVERVDVVVDEAIGLEGRAE
+FYDGTGALEDMLQSHLLQVLAMTALEPPARVAADELHDAVVEVLRATRVWQDDPVAASRR
+ARYTAGEADGRPVPAYADEEGVDPRRRTETLAEVTLAVDTDRWRGVPFRLRSGKALERTR
+WEVALTLRAPEDVPEGLSPAAGRDRIVVGLQPRGVRIELAVDGADTPFDAERRALTAGLG
+EEHVDAYGEVLRGILTGEPLLSVRGDAAEECWRILAPVIAAWEADEVPLDEYPAGSAGPE
+GWD--
+>KD337_NAFOICDF_01011
+M--------------ASADTAARDVALIILGATGDLTSRLLLPGLGRALAAHEMPRVTLV
+GSARSE-HGEDEWRTVVREALAETPLDADAAEDLAGRAVWCAADASDPDDLRGLFAAAAE
+AVGSDDVVPVVYFAVGPGVAEQAVEALGGMDDVPEGLRLALEKPFGRDEESARRLNAALA
+EVVDEDRIFRVDHFLGESMVTALVGLRTANRTLARVWSAADVERVDVVADESIALEGRAE
+FYDGTGALQDMLQSHLLQVLAMAALEPPARVDAAGLQGAVVEVLRTTRLWDDDAAASSRR
+ARYTAGVLDGTRTPAYADEEGVDASRGTETLAEVTLAVDTDRWRGVPFRLRSGKALAETR
+WEVILTLRAPEDVPEGLSAAGRPERIVVGLNPRGVRVELAVDGADTPFDARRTPLAAELG
+AERVDAYGEVLRGLLTGDPLLSVAAEASGLGWKILEPVIAAWEADEVPLEEYPAGSAGPE
+GWD--
+>TT9_LFPAFLNI_01719
+MPDVQNPCPAGASPAPDDDRAAASVALVIVGATGDLTRRLLLPGLARALTVHDLPEVTLV
+GSAHSDGHSLEERRGVIEEAVGETDLDADARAGLVERAVWRTADASDPEDLGALLVAARE
+AAGE-EAVVVLYLALDPDLAAEACAALEQVEDRPTGLRIVLEKPFGSDQRSARELNALLG
+RIAEEEDVFRVDHFLRESMVSGLLTLRTANRVLERVWSAADVEHVDIVADESLALEGRAG
+FYDGTGALEDMLQSHLLQVLAMVALEPPRRLTPDALQDAVVEVLRATRVRDDDAVASSRR
+ARYTAGTVGGQDVPDYVAEEGVDPENGTETLAEVELEVRTDRWAGVPFRLRSGKALEPRR
+WEVVLSLRPPEGVPAGLEAAAGRERIVVGLDPRALRVELAVDGPDTPFVAERSVLAADLA
+EEDVDAYGEVMRGVLTGDRMLSVGGDAAEECWRILAPVIEAWDAGRVPLDEYAAGSSGPG
+DWPER
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002023.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002023.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c65899a88facdb12f71abd202a4c3f16a2386904
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002023.fa
@@ -0,0 +1,28 @@
+>AS2_ACLBLIBL_01090
+MPRRSASAARTRQALRGAVQIYAPSTVYAVGLGAMTPALAVAALALGLDAARAAAVVVLV
+GLGSLVANAPASALAARAGERVTIVVSAFLGTAGAALAWATTAGLSSSPGREGVVEPGRL
+ALYLTAVLAMGMAGSGFNLARQAYLAVAVPPSHRARAMSTLGGTIRIGVFLGPFLGAAVQ
+AAMGLDGAFAAATAAMAVGALLCLRIRDLPASGAAAPGADP--GAQPVPAHRPRVADVAR
+ARREVLLTAGFGVVAVSAARAARNAVIPLWATHLGMDAASASLVFGLAGAVDLLLFYPAG
+RLMDRHGRRAVAVPCLAVLGAGFLAVSLTRDPAAFAAATVLLGIGNGFGAGIVMTLGADY
+------------W-------LLGHP-------------VGLG------------------
+--------------RAG
+>SA211_MHAAABBN_01493
+MRPRSASAARTREALRDAVQIYAPSTVYAVGLGAMTPALAVAALALGLDAARAAAVVLLV
+GLGSLVANGPASALAARAGERVTMVVSAGLGTVGAGLAWATTAGVSSGPSAAGVAEPGRL
+ALFLAAVLAVGMAGAGFNLARQAYLAVAVPATHRARAMSTLGGTVRIGTFLGPFLGAAAQ
+APLGLDGAFAAAAAAMAVGALLCLRIRDLP-----VPASDPAAGEEPGPAGRPRLLDVAR
+ARRGALLTAGFGVVAVSAARAARNAVIPLWATHLGLDAATASLVFGLAGAADLLLFYPSG
+RLMDRFGRRAVAVPCLTLLGAGFLAISLTREPTAFAAAAVLLGIGNGFGAGIVMTLGADH
+SPPNARAPFLGLWRSMSDAGMLAGPLLLSGATAAAGLAVGVGSLAVVCGVGAVVFAAVLP
+RGPGAVADPPPVVVRPR
+>TT9_LFPAFLNI_01715
+MRPRSASAARTREALRDAVQIYAPSTVYAVGLGAMTPALAVAALALGLDAARAAAVVLLV
+GLGSLVANGPASALAARAGERVTMVVSAGLGTVGAGLAWATTAGVSSGPSAAGVAEPGRL
+ALFLAAVLAVGMAGAGFNLARQAYLAVAVPATHRARAMSTLGGTVRIGTFLGPFLGAAAQ
+APLGLDGAFAAAAAAMAVGALLCLRIRDLP-----VPASDPAAGEEPGPAGRPRLRDVAR
+ARRGALLTAGFGVVAVSAARAARNAVIPLWATHLGLDAATASLVFGLAGAADLLLFYPSG
+RLMDRFGRRAVAVPCLTLLGAGFLAISLTREPTAFAAAAVLLGIGNGFGAGIVMTLGADH
+SPPNARAPFLGLWRSMSDAGMLAGPLLLSGATAAAGLAVGVGSLAVVCGVGAVVFAAVLP
+RGPGAVADPPPVVVRSR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002025.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002025.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2671aa3affbe8c63d2cf9d15025f82a5786823ca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002025.fa
@@ -0,0 +1,25 @@
+>AS2_ACLBLIBL_01223
+MTDRIFLSSPDVTQAEEDALVRAFRSNWIAPLGPEVDAFEAEL--AEYTGRAHAVVLSSG
+TAALHLGLLNLGVGPGDLVPTSSLTFAATANAIAYTGAEPVFVDAD-ESGNMNPALLEQA
+LATLRGEGHEVKAIVPVDLLGKTADHAAIGRIAAEHGAVVLSDAAESLGATRDGKQSAAY
+GVAAAVSFNGNKIMTTSGGGALLTDDEEMATRTRYLATQARQPVVHYEHTDIGYNYRLSN
+ILAALGRAQLNRLEEMIERRRALRIRYRELFAAVPGVEMFGEPSGADGGPTRDNFWLSSV
+LVDPDAAGFTAEDLRAHLAGQDIEARPLWKPMHLQPVFAGRRAFTDGTGERLFTTGLSLP
+SGSVLDESRISRVLDSITAFLESRA-
+>KBS0714_MOLHKGIG_00889
+MAEFIPAAKPLIGDEERAAVDRVLRSGMVAQ-GPEVAAFEEEFGAAMVDGRA-CVAVNSG
+TAGLHLGLLASGIGPGDEVIVPAFTFAATGNAVALTGATPVFADVDLDTYTLDPQDVRAK
+VT------ERTAAVMPVHLYGHPARMDELEAICREHGLQLFEDAAQAHGARWKGRPVGTF
+GAWGMFSLYPTKNMTSGEGGMVSVGEADVARRLRLLRNQGME--VQYRNELVGFNNRMTD
+IHAAIGRVQLTKVGAWTRRRQEIAARFD---AELRGVTV---PTVLEGA---EHVYHQYT
+VRLPEELAGTRADVLARLKDEFGVGTGVYYPVPTNELPSFGVEADLPNTRVAASTVFSIP
+VHPSLTDADVTRVVEAVNTVVAEAAA
+>SA211_MHAAABBN_00611
+MAEFIPAAKPLIGDEERAAVDRVLRSGMVAQ-GPEVAAFEEEFGAAMVDGRA-CVAVNSG
+TAGLHLGLLASGIGPGDEVIVPAFTFAATGNAVALTGATPVFADVDLDTYTLDPQDVRAK
+VT------ERTAAVMPVHLYGHPARMDELEAICREHGLQLFEDAAQAHGARWKGRPVGTF
+GAWGMFSLYPTKNMTSGEGGMVSVGEADVARRLRLLRNQGME--VQYRNELVGFNNRMTD
+IHAAIGRVQLTKVGAWTRRRQEIAARFD---AELRGVTV---PTVLEGA---EHVYHQYT
+VRLPEELAGTRADVLARLKDEFGVGTGVYYPVPTNELPSFGVEADLPNTRVAASTVFSIP
+VHPSLTDADVTRVVEAVNTVVAEAAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002029.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002029.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d09fc160ee70ae8a4ec7ed2b7268a2380ff90c3b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002029.fa
@@ -0,0 +1,13 @@
+>AS2_ACLBLIBL_01309
+M----------LGALIAGGATFLTGKLADDRARQAERKEH--VARVGAEFLREADRVEQY
+LLDYVHEHAAVPGDNEEWGETAELARIAWELRLFAPRPVNDAAAELVDVLEAWESGVDGR
+GRDVLEIHKRFVSVLRVYLHGEDD
+>KD337_NAFOICDF_02234
+------------------------------------------MARVGAEFLREADRVEQY
+LLDYVHEHAAVPGDNEEWGETAELARIAWELRLFAPRPVNDAAAELVDVLEAWESGVDGR
+GRDVLEIHKRFVSVLRVYLHGEDD
+>TT9_LFPAFLNI_00119
+MDAWIGVVGTLLGAVVGGGVAYLNG--TRDRKLEARRDQEKCVTEVAGELLQIVDARERY
+VHGYLEVVGEFPHDGAPDGEEDPARKTLALLELYAPAPVTTAAREYVDLMDKW-------
+------------------------
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002031.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002031.fa
new file mode 100644
index 0000000000000000000000000000000000000000..54d2f016bd7cc290857a77034dc08de82a6dbaef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002031.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_01694
+MTIVTDKRDRPLHATIAILLAILTGGYLAPWAVAATRGKSNVWTVFWVNLLAGWTVIGWA
+IALYMSLTSHRTARVWGAR-R
+>SA211_MHAAABBN_00913
+---MTDQRDRPLHATIAVVLAIATAGYLAPWAIAAVRGRSNVWAVFWVNLLTGWTVLGWC
+IALYMSLTSHRRLRPWGPRGL
+>TT9_LFPAFLNI_01144
+---MTDQRDRPLHATIAVVLAIATAGYLAPWAIAAVRGRSNVWAVFWVNLLTGWTVLGWC
+IALYMSLTSHRRLRPWGPRGL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002032.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002032.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b5bee99ecee7daa45bccc1bcbba76912676c53fd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002032.fa
@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_01938
+M----------------------LN-----------------------------------
+-HSHTPAEADP-------------------------------VNEPDSLQALAKAVLDKQ
+QASARQIAEYARKAGKRLSYTTLNHMAAGTYRSTPTAE-TLQTLAWLAGVSETVAFHAAG
+LPVPGPPLADELPPG-------SDNLSPKSRAAVIQMLRVLIDLE--SNHDEH-------
+-------DHPDQHQDRERGTAERGGARGGDASAEQKTAAAGA-------PADFDLAAHPD
+FELTRDRQAREWGDAGEESQDHGEGE-SA
+>AS2_ACLBLIBL_02101
+M-----------------------------------------------------------
+------------------------------------------ERIPTSLQELAQLVLDVQ
+GTSARQVALRAEAKGLKLKDTTLNQMKSGSYKFVPREE-TLRALADLAGVSVETAFHAAG
+LTAPGPPLADELPPG-------SDNLSPKSRAAVIQMLRVLIDLE--SNDDHHTTNPTPA
+HERAQHDDGADAAPDRRRG-AGRGDARPG-----QKTAAAGGTPARSLNPADYDLAAHPS
+FELTRDRQDREWGDVGEENQDPDQEDRRG
+>KBS0714_MOLHKGIG_00948
+MGPRAVPLAIIGDLHLDLTDAQWVNSLYAVLLAALLLSTGNLADRWGRKRLFLTGSALIA
+PYPRRPAAQHPLCCYRFGVHFHATAGVRGRLLPLASHRRLVAMNDMHSLGRLIAPAQERN
+GWSLSDLAARADRAGYDMSHASFARLKSTPVTSIKGENITMLALVLRAPVAHVV---TAA
+LESIGVELDSALHPSVLDVVQESPDLSTYDQELLAAVLRVMLDRRRTDHHDER-------
+-------DHADQDQDRERGTAERGGARGGDAGAEQKTAAADA-------PADFDLAAHPD
+FELTRDRQAREWGDVGEENQDPGDEA-GA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002036.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002036.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8604d86f99fdcd4ecc6f0978c0fa96895e27b1d2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002036.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_02272
+------------MPKKFDPEVKDRAVRMVLDRVEEAGSVTKAVALVSPKVDVGRETLRRW
+VCQHRVDAGLKDGPTSDDLAELKRLRGEVKRLREDNEILRKASIFFAGELDPRNR
+>KD337_NAFOICDF_01826
+MPLPFEFERMLFMPKKFDPEVKDRAVRMVLDRVEEAGSVTKAVALVSPKVDVGRETLRRW
+VCQHRVDAGLKDGPTSDDLAELKRLRGEVKRLREDNEILRKASIFFAGELDPRNR
+>SA211_MHAAABBN_00324
+------------MPKKFDPEVKDRAVRMVLDRVEEAGSVTKAVALVSPKVDVGRETLRRW
+VCQHRVDAGLKDGPTSDDLAELKRLRGEVKRLREDNEILRKASIFFAGELDPRNR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002037.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002037.fa
new file mode 100644
index 0000000000000000000000000000000000000000..41607297edcee12411b1bc4c1264146437d8e730
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002037.fa
@@ -0,0 +1,39 @@
+>AS2_ACLBLIBL_02329
+M------------------------------------------------------------DGF----------------
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-RRSLD--------------------------------------------------------------------------
+---------------------------------------------GQFV-------------------------------
+------------------------------------------------------------------------TVDG----
+--------------------------------------------------------------------------------
+---------------------------------------HD------------------------YSE------------
+--------------------------------------------------------------------------------
+---------------------------------------------VTRPKLAQADQQERLPDGSERPLPTRTLHLMAAED
+GTAPVDLNDWERQVLDSEAAEPSLRGWYRNPSRASKQSLAIPFQDGAGQWQALRPDFVFFHANQDGTIRADIVDPHGTHL
+ADALPKLRGLAEYAQAHG--------------------------MPSVGSRPSLRSRGSCGCW--T
+>KD337_NAFOICDF_00346
+MRYTLKDYQADAVAEILANIERAQR-LRREGHLPTMALTATTGGGKTVIAAAVIEALFFGSDTF--DFLADPGAVVLWFS
+DDPTLNAQSRHRLEAAAPDLIGRMTDLNAGYTKPALDPRTVYFINTQKFAKTSRMVRGFQPSGTEGQDTFAGLDPRVRPD
+MVPQTIYDIIAATIQNPDLTLYFFLDEAHKGMGTTARAQAEQKTIVKRLIAGQPGVPPMPVVFGISATLQRFTNAMDGIR
+GRLGLDPVQVDPARIQKSGLLKDNILLNIPHPDEVGSFETVLLRSAVRQLLESEAAWDAYVAEQRADHPGAEIERVVPLM
+VLQTPNSVTPSDIAGYLRTIMDVWPEMPAGAVAHVFGEKEAIQAAGLFIPHIDPEKVQDTKRVRILLAKEAVTTGWDCPR
+AEVLMSFRTVSDLTKITQTLGRMVRTPLARRIPGNDELNSVLCLLPNFDEKAARQVVKDLTNDEVPNPIIDPVVDPDPRP
+EVTPPSGGAGASSGGGTEPANPEVPGHGTHATDRVAEPSADGQGTPARPGGLHQGETRGASGGGQGGAVGPVVLTDRVKV
+TPIENGPLWDLFDSLPTETTPSRGLGPVPLLTALGQYLSEDGLRPDAGEEAHRHLHGTLDYRAGQFREDVDKAVKDILEV
+RVRTILADRATGKERIGMFTERADLAVVREAYQRAARAFTADVSRTYVNHIVGPDADEDDLREAYARVAGMASVPDIVAD
+VKEEASRLVGRWFQEHRTDIKALADDRQAAYKALMEQSTEPQRGNLAKP----VNWQESPVDVDKKPLPTRTDHILTAED
+GTYPLTLNRVESSVVDQEMRRRGAIAWYRNPSRVKDESLAIAYRDG-NAWRTMRPDFLFFHEDAQGRVRASIVDPHGHHL
+SDALPKLRGLARYAEQYGDEFMRIEGLTEVNGKMRALDMQDPKVREAVEVATSARALYESDAAVDY
+>KD337_NAFOICDF_00693
+MRYTLKDYQAQAVEQVLNRLHRARKNYQDDGVLSQFSLAAATGAGKTVMAAAIIEALFFGSDQYTEDIAPDPGATVLWFS
+DDPDLNDQSRARIHAASSELDGRLRTVENSFAETTFAPGQVYFLNAQKLREGARLVRGAQDPTNAATPVMAA------PD
+MAQRTIYDVIANTVATPGRTLYFILDEAHRGMKTTKKNDQERATIVQRLINGTALAPTMPIVLGISATVERFTQAMAHAT
+DRDALSPVQVDPALVQASGLLKDDVVLTI--PEEAGAFDTTLLREAVARTKASTRAWAAYAAEQGEPNP------VVPLL
+VVQVADKPSDEHLSRILDVIHQEWPELRPQDIAHVFGTHTDRHLPGQIVNYIAPQRVQETTHIRVLLAMEAISTGWDCPR
+AEVLMSFRTYKDATYVHQLLGRMVRTPLARRIPGNEVLNSIDCFLPHFDKTTSTAIAQTLMRGQ--SDMDDTTSDP----
+---------------------------GKQAARRV--------------------------------LFDPVTLTP----
+NPAVGEDVWAVFDALPSMNIPQGATKPLKRLDILANALSHDELLPGAVKTAAHTMCKLLDGCRVQYSEQIAAARQDVLTL
+SAQRLTGRLGTTTLSTTSLELLADDRAIEEAAAAAARTLTGWIAGAYIDHIVPEDEEDLDLREGDIIIASLARTSEVVAD
+LEAKADKLVQDWLSQYRVQINGLTDERQAVYDRVREMARQPERVALTRPKLTQADQQERLPDGSERPLPTRTLHLMAAED
+GTMPVDLNTWERQVLDSEAAEPSFRGWYRNPSRASKQSLAIPFQDGAGQWQALRPDFLFFHANQDGTIRADIVDPHGTHL
+ADALPKLRGLAEYAQAHGDAFGRIEAVAEIEGQLRVLDMKNDVVQAGVHAAQDAESLYKAAPA--Y
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002039.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002039.fa
new file mode 100644
index 0000000000000000000000000000000000000000..18bddeb6997ad208f0fc63bd99d4b96d3d38d2f6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002039.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_02429
+MA-LNAARRAKHQVW-----TLRKVSAQQARELLDTTA--QRLRPLSFNPHRYPLHR---
+------FLRFDAPMQ-ETLPAPERIFVLWTGLNEMPAIRAANLGRIRTIVGVPVEFVTPA
+TLHEWTVEHHPLHPAYPHLSLTHSSDYLRAYLLHHHGGGYMDLKAPAGSWADMFTRLNGD
+PEAWVLGYPEDSKGRIPPYGGHMERDLRIHFARVMGTMAMIARPRSPFTAEWFHEVERRL
+DYFLPLLRDHPGGVRDEIDLYPVGWTQILADIAYPLPLKHHDHIRLEKGFTPPDEAYR
+>KD337_NAFOICDF_02313
+MRLMYSARQAKHAAFVANKRTRRVLGAGKWRALTMVTPALSRVWPFRYDAQRYTGPNRGK
+EGHDLSFLQLPPPIDAASSELPRRVFVLWTGNNPLPPNRSRNLAHLRKVIAVPVVLVTPQ
+TLGGWLIPGHPLHPAYEHLSLVHRSDYLRAYLMHHHGGGYIDLKAPVGSWAPAFDRMERD
+PSAWLSGYGEINANASARFPGPMGRDIATHWKSLVGTAAMIVRSHTPFTGEWIREVDRRM
+DALAPRLAASPGLVRLGGPGYPVSWTDLLGKVYQPLQLKYFEHIRVDDDLLVNFTDYQ
+>SA211_MHAAABBN_00235
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------------MHHHGGAFTGIKKHHHAWAPLIEEMQED
+VDAWVTGYRVPRSSEAAYFHGPLGRDVRKNFSLLLGFSGKIVRPGSPLTSEWLAEVERRL
+DYYGSLLAQAPGNIYGDNPGYPVPWTRIGSQVFEPLTLKYREHIRIDPRLKPQLWGHR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002040.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002040.fa
new file mode 100644
index 0000000000000000000000000000000000000000..59eeef32db30107adcea03b7a5a8da0094694d07
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002040.fa
@@ -0,0 +1,19 @@
+>AS2_ACLBLIBL_02430
+MKFLDKSKSRALKAIRRGDPVSWVPDWMGLGNILYQGLWAFEGDDRQEGRRVLLHPKREA
+AVALFPTLRGRYFVTRDRVPFTARRVMPWR----EESPEPIPYQPAELPGFIREVLLPGS
+PVAAVPDGLSEDDVVINVRRGDYYSVPQHEAEFGMDQVAYVRAAISRAAAVSGPIGRILV
+ISDGLDWCRENLGPVLEPHGPVIYEDGDLFHDLRTIVHARRLVITNSTFSYWGGYIGDEL
+HPGRLVIAPALFSHNLNGGRAHQLKPSWTVLEDGCWDRAR
+>SA211_MHAAABBN_00242
+MRAVGAVKASILRTVRRGAPVSWAPEWMGLGNLLYQGLWAYEGASLGEPRFVLLPENRVG
+VIELFPRLREKRFLRRSHVPFTAQRVRPWE----NEERSTGRFAPPLLEDFIRDDLLPGS
+AVSPATDSY-DDAIVVNVRRGDYYSVERHRAQFGMDQEKYLRSALAEAVRTQGPVGRIVV
+ISDGLDWCRDHVNDLLSEFAPVEYEDGDIAHDLKAIIHAKRLIITNSTFSYWGGYIGDVL
+NPGRQVIAPWFFSRTENGGRSHLLAPSWTVIEGDF-----
+>TT9_LFPAFLNI_00514
+MNRLLDMKSNALSAIRRGRPIAWVPEWMGLGNLLYLGHWAYEGSAEDEDRRVLLHADRGA
+AVGIFPRLRERLFVRREDVRFTDRRVMPWSGAATRQRPDHIPAQAH--EAFIRDLLLPDS
+PVATPPHCL-KGMLVVNVRRGDYYSVKDHQDDFGMDQVEYIKAALKTSVAAHGSPDGIAV
+VSDGLDWCKEALGGVLEAVAPTTYVDGDLTHDLGTIVHAERLIITNSTFSYWGGYIGDVL
+SPGREVIAPWFFSRSQDGGRATQLRPHWTALEGDFY----
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002042.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002042.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c3f3c9f67cf07c1272578cfb3ab54a44ecb99c2a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002042.fa
@@ -0,0 +1,22 @@
+>AS2_ACLBLIBL_02436
+-MTLDILYVRPRGSGWGPVAELVALAARLFDARVAVVDDHGEVSLFRKTAASLPRGRRRP
+GHHLLVVAPHAGMAAYAARPRLWFPGYDSTAVWVIDSFWTDRTPRLLRGTAHVDRVFITD
+PQLVEEWEQITGTPVSVLPWGADTALYPSAAH--HRDIDLLRLGRQPKAWADDDATAADA
+RRRGLRFAGRPPMNDDPGQNQHNVREALMGAKLVLAFSNLVSPAPYTHPTRDYLTGRWMD
+ALAAGCLVAGTAPAAATSTLWDGATLEISPTSREDAWPVLTAAAEGWSPERAAEQQERAR
+RTLDWRWRLRQMSSVMGWPEPPRLTQELERLISSPQQG
+>KBS0714_MOLHKGIG_00515
+MASFDILYIRPAGSGWGPVHELVQLTRRLFDARLIEVDDTGDVNRLQRASALLPRGPRVR
+DRHLLVMGPQPAAIAHVAHPRLWLPGYRSVAVWIIDSFWTDRTPRLLRDRPHVDRLFITD
+PQLVSEWSGQTGLPVGVLPWGSDTTRFTSAQEGTDRPVDVLRVGRQPRAWSDDARTSRDA
+AAHGLHFAGRPPFSDDPARNQMLVREAMGRARVVLAFSNLVSPAPYTHPTRDYLTGRWTD
+ALAAGCLVAGTAPASAASLLWPGATVEISPTSRDDAWPVLAQLASEWTPQAAADRQSEAR
+RRLDWRYRLRDLCMAMDWAVPDRLTAELATL-------
+>SA211_MHAAABBN_00240
+-MSVDVLYVRPGGSGWGPVDVLARLAARLLEGRLVEVEDRGAASWAQRASVLLPRGRRAR
+GRRLLVLAGNPAALALAARRDLWWPGHESTAAWIVDSFWTDRIAGIARHRPHFDRLFVTD
+PDLVDEWSALTGRPVDALPWGSDT--LAVAADDGPRPVDLLRLGRQPEAWDDDARTAREA
+QDHGLVFRGRPPSSPDPLQNQEAVRAALAQARLVLAFSNLVSPAPYTHPTRDYLTGRWTD
+ALAAGCRVAGVAPRSAATLLWPEATLEVSPNSRAEAWPVLAEAAAAWTPERAAEQRRRAR
+RELDWRLRLQRLCTAMGWPLPPTLDAELAAL------G
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002045.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002045.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d916ea7bb475c9a6e9e056a5cbe0f6b08fafd0c6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002045.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02585
+MFAIARSEMTQLVRNRLVAASSLFIPLAFSAVLIFNRENFGGTPVTAALILVTVTAMGTY
+ITATTTLASRRQNLFLKRLRSTSAKDASILSGLVLPIALVNLVQAGVIVAILSVVGTPPV
+GVVAVVAAVVVLELMFVGAAIATAGLTNSPDHAQVTTLPLFVVALGAAMWVGLTGTEELA
+GVKRLLPGGAVTELIVEGWDGMVLHEAVSLLLPSLAFVVAAFAMAKSTFRWEPRA
+>KBS0714_MOLHKGIG_00378
+MFAIARSEMTQLVRNRLVAASSLFIPLAFSAVLIFNRENFGGTPVTAALILVTVTAMGTY
+ITATTTLASRRQNLFLKRLRSTSAKDASILSGLVLPIALVNLVQAGVIVAILSVVGTPPV
+GVVAVVAAVVVLELMFVGAAIATAGLTNSPDHAQVTTLPLFVVALGASMWVGLTGTEELA
+GVKRLLPGGAVTELIIEGWSGMALHEAVSLLLPSLAFVVAAFAMAKSTFRWEPRT
+>TT9_LFPAFLNI_00384
+MFAIARSEMTQLVRNRLVAASSLFIPLAFSAVLIFNRENFGGTPVTAALILVTVTAMGTY
+ITATTTLASRRQNLFLKRLRSTSAKDASILSGLVLPIALVNLVQAGVIVAILSVVGTPPV
+GVVAVVAAVVVLELMFVGAAIATAGLTNSPDHAQVTTLPLFVVALGASMWVGLTGTEELA
+GVKRLLPGGAVTELIIEGWSGMALHEAVSLLLPSLAFVVAAFAMAKSTFRWEPRT
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002046.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002046.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5acc27da6f4e97f2e33785a6ab4a055192b7528e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002046.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_02587
+MKTIRTIAFILFLCATAFGVMLTLHYLPIPEILPSEVTSWVPARDTADATWLIVGMVVAV
+VATAVGFSASHKAVERETQVTS
+>KBS0714_MOLHKGIG_00375
+MKTIRTIAFILFLCATAFGVMLTLHYLPIPEILPSEITSWVPARDTADATWLIVGMVVAV
+VATAVGFSASHKAVERETQVTS
+>TT9_LFPAFLNI_00382
+MKTIRTIAFILFLCATAFGVMLTLHYLPIPEILPSEITSWVPARDTADATWLIVGMVVAV
+VATAVGFSASHKAVERETQVTS
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002048.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002048.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b80dcc94f8386060d0690c3c46a629be7b5fae9b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002048.fa
@@ -0,0 +1,16 @@
+>KBS0714_MOLHKGIG_00013
+MSTTLTLFGHSAVRLEKAGRRLAFDPGAFSDAAVLDGADAVLVTHGHPDHVVPEQLARAV
+AGTEAHVWAPRDLTGPLAEAGLDAGHVHTAVPGETFEAAGFRVEVLGGEHAVIHAEVPRP
+VNVSYLVDGAVLHPGDSFTVPDADVEVLLLPAAAPWLRIADVVDQMRAIAATHTRPIHDG
+ILSEDGKGVVDGVLSGLAEGVTDYRRLAPGEPWTF
+>SA211_MHAAABBN_02031
+MSTTLTLFGHSAVRLEKAGRRLAFDPGAFSDAAVLDGADAVLVTHGHPDHVVPEQLARAL
+AGTEAHVWAPRDLTGPLAEAGLAAGRVHTAVPGETFEAAGFRVEVLGGEHAVIHAEVPRP
+VNVSYLVDGAVLHPGDSFTVPDADVEVLLLPAAAPWLRIADVVDQMRAIAATHTRPIHDG
+ILSEDGKGVVDRVLSGLAEGVTDYRRLAPGELWTF
+>TT9_LFPAFLNI_00013
+MSTTLTLFGHSAVRLEKAGRRLAFDPGAFSDAAVLDGADAVLVTHGHPDHVVPEQLARAV
+AGTEAHVWAPRDLTGPLAEAGLDAGHVHTAVPGETFEAAGFRVEVLGGEHAVIHAEVPRP
+VNVSYLVDGAVLHPGDSFTVPDADVEVLLLPAAAPWLRIADVVDQMRAIAATHTRPIHDG
+ILSEDGKGVVDGVLSGLAEGVTDYRRLAPGEAWTF
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002049.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002049.fa
new file mode 100644
index 0000000000000000000000000000000000000000..45dcc7e422c68788a6604703ec2d57b367b90555
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002049.fa
@@ -0,0 +1,10 @@
+>KBS0714_MOLHKGIG_00027
+MTIISTGTSTPESAAAWRAALAEAALRGEDVVWFSLDGTEPDEAEAREAGVAVSVAHAQE
+RGRDAVGDLLEHAERVGASRIVVGVKHRSPVGKLLLGSAAQQIILEARVPVVCVKP
+>SA211_MHAAABBN_02045
+MTIISTGTSTPESAAAWRAALAEAALRGEDVVWFSLDGTEPDEAEAREAGVVASVAHAQE
+RGRDAVGDLLEHAERVGASRIVVGVKHRSPVGKLLLGSAAQQIILEARVPVVCVKP
+>TT9_LFPAFLNI_00027
+MTIISTGTSTPESAAAWRAALAEAALRGEDVVWFSLDGTEPDEAEAREAGVVASVAHAQE
+RGRDAVGDLLEHAERVGASRIVVGVKHRSPVGKLLLGSAAQQIILEARVPVVCVKP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002050.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002050.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a4d8429df9e479712a3e971a63bdcde4e226d7fb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002050.fa
@@ -0,0 +1,22 @@
+>KBS0714_MOLHKGIG_00028
+MSSTSPDGPPRRRTGIGRIVFSVIAVLTVLAASAFSIRSASGGNDIRTNLTLIAPAAAGG
+GWDSFQRELQQTMRVNGLVNNVQVVNIPGAGGTIALGQLTTLEDANNLMVGGTGQIAAHA
+ARGTGPELSQVTAVSRVVEEYSLVVVPADSPYQSMDDLVTAWRADPAHVAWTGGGSFDQL
+VMADIARTADVPVADTTYIPSDGGGEAIQALLNGTAQASAGGFADIYPQVEAGRLRALGV
+VAAEPLAGVEEIPTLRSQGYDVTLTNWRALFAPPGISAEERTELEALIAEAVDTPEWKEA
+VQRNYWNPVPLSGTELEEFIAAEKERIGTLTEEIK
+>SA211_MHAAABBN_02046
+MSSTSPDGPPRRRTGIGRIVFSVIAVLTVLAASAFSIRSASGGNDIRTNLTLIAPAAAGG
+GWDSFQRELQQAMRVNGLVNNVQVVNIPGAGGNIALGQLTTLEDANNLMVGGTGQIAAHA
+ARGTGPELSQVTAVSRVVEEYSLVVVPADSPYQTMDDLVTAWRVDPAHVAWTGGGSFDQL
+VMADIARTAGVPVADTTYIPSDGGGEAIQALLNGTAQASAGGFADIYPQVEAGRLRALGV
+VAAEPLAGVEEIPTLRSQGYDVTLTNWRALFAPPGISAEERTELEALIAEAVDTPEWKEA
+VQRNYWNPVPLSGTELEEFIAAEKERIGTLTEEVK
+>TT9_LFPAFLNI_00028
+MPSTSPDGPPRRRTGIGRIVFSVIAVLTVLAASAFSIRSASGGNDIRTNLTLIAPAAAGG
+GWDSFQRELQQTMRVNGLVNNVQVVNIPGAGGNIALGQLTTLEDANNLMVGGTGQIAAHA
+ARGTGPELSQVTAVSRVVEEYSLVVVPADSPYQSMDDLVTAWRADPAHVAWTGGGSFDQL
+VMADIARTADVPVADTTYIPSDGGGEAIQALLNGTAQASAGGFADIYPQVEAGRLRALGV
+VAAEPLAGVEEIPTLRSQGYDVTLTNWRALFVPPGVSAEERTELEALIAEAVDTPEWKEA
+VQRNYWNPVPLSGAELEEFIAAEKERIGTLTEEIK
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002060.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002060.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3a0ddb90860818485455773505f972a19a572556
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002060.fa
@@ -0,0 +1,22 @@
+>KBS0714_MOLHKGIG_00499
+MGVPVDRARRLLGAVIVAQMLPEGVVVKGGNGVRLRHGATGTRATRDLDLLARDPQQALK
+DLTGFVDRGWGAAPGSKRELKADPAATRVAFFGTVHEDDPAEPLGVPDPYVLSRAKVTLH
+FLSARTSWVSVPIEIGRDEFEGSTLAQPVEVVAPQVAEAVTALGCGTPRSVAVMAVEQQL
+AQKIHAVTDPHQTRGHDLVDIQLLWHGAEAEGGVDIPLLADLVSRTFMFRSPGRTAAGHT
+PHEWPPPVAHVRTLEQGYLDALEETRVGAEGQARLLQPRVSDAADWLESLITRIARAAGA
+EGSGAQG
+>SA211_MHAAABBN_00220
+MGVPVDRARRLLGAVIVAQMLPEGVVVKGGNGVRLRHGATGTRATRDLDLLARDPQQALK
+DLTGFVDRGWGAAPGSKRELKADPAATRVAFFGTVHEDDPAEPLGVPDPYVLSRAKVTLH
+FLSARTSWVSVPIEIGRDEFEGSTLAQPVEVVAPQVAEAVTALGCGTPRSVAVMAVEQQL
+AQKIHAVTDPHQTRGHDLVDIQLLWHGAEAEGGVDIPLLADLVSRTFMFRSPGRTAAGHT
+PHEWPPPVAHVRTLEQGYLDALEETRVGAEGQARLLQPRVSDAADWLESLITRIARAAGA
+EGSGAQG
+>TT9_LFPAFLNI_00498
+MGVPVDRARRLLGAVIVAQMLPEGVVVKGGNGVRLRHGATGTRATRDLDLLARDPQQALK
+DLTGFVDRGWGAAPGSKRELKADPAATRVAFFGTVHEDDPAEPLGVPDPYVLSRAKVTLH
+FLSARTSWVSVPIEIGRDEFEGSTLAQPVEVVAPQVAEAVTALGCGTPRSVAVMAVEQQL
+AQKIHAVTDPHQTRGHDLVDIQLLWHGAEAEGGVDIPLLADLVSRTFMFRSPGRTAAGHT
+PHEWPPPVAHVRTLEQGYLDALEETRVGAEGQARLLQPRVSDAADWLESLITRIARAAGA
+EGSGAQG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002061.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002061.fa
new file mode 100644
index 0000000000000000000000000000000000000000..651236f150f24954a8db71ec1ebc1dac7d4bd63a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002061.fa
@@ -0,0 +1,28 @@
+>KBS0714_MOLHKGIG_00525
+--------------MGAVAPPEARPARRHASLGLVPDGQAAWTRSPWNPLVTPASPRLFE
+AVLAIGLVMEAFTAPGLPIPFAEFSAILLLLLASFRQPRRDLSQYGVLALVALALVAYLV
+AVTVHNDLDPTRRATRITLLILLIYAIASERIDIKGVLYGMTAGALINVPLFYAGLAPDT
+YGGYLTGFLGDKNVSGLFYALLPVLLVATMQRMGPKLLVLGAGFALTFLTGSRTSMAGLL
+CAVVWILVSPYLGRVLRIALGVVLGWFVSWAEVNLADLGIFGDRTGTDWFREQIQEASAE
+KVADTSFFGQGLSTAFVELDNVTMFFHNSYLGLLVEGGWPFLIVVVGAYLWLCLRPFART
+HRSPSRVAVEAAALIILVTSLQLGEVFITIFGAVVLGCGLLLSAQENEESQGAPAKDRAH
+RRKLDRIIERSRRAGV
+>SA211_MHAAABBN_00246
+MRPSTPRDRTAARAMGAVAPPEARPARRHASLGLVPDGQAAWTRSPWNPLVTPASPRLFE
+AVLAIGLVMDAFTAPGLPIPFAEFSAILLLLLASFRQPRRDLSHYGVLALVALALVAYLV
+AVTVHNDLDPTRRATRITLLILLIYAIASERIDIKGVLYGMTAGALINVPLFYAGLAPDT
+YGGYLTGFLGDKNVSGLFYALLPVLLVATMQRMGPKLLVLGAGSVLTFLTGSRTSMAGLL
+CAVVWILVSPYLGRVLRIALGVVMGWFVSWAEENLADLGIFGDRTGTDWFRAQIQEASAE
+KVADTSFFGQGLSTAFVELDGVTMFFHNSYLGLLVEGGWPFLVVVVGAYLWLCLRPFART
+HRSPSRVAVEGAALIILVTSLQLGEVFITIFGAVVLGCGLLLSAQESDESHGAPAKDRAH
+RRKLDRIVERSRRAGR
+>TT9_LFPAFLNI_00525
+MRPSTPRDRTAARAMGAVAPPEARPARRHPSLGLFPDGQAAWTRSPWNPLVTPASPRLFE
+AVLAIGLVMDAFTAPGLPIPFAEFSAILLLLLASFRQPRRDLSHYGVLALVALALVAYLV
+AVTVHNDLDPTRRATRITLLILLIYAIASERIDIKGILYGMTVGALINVPLFYAGLAPDT
+YGGYLTGFLGDKNVSGLFYALLPVLLVATMQRMGPKLLVLGAGAALTFLTGSRTSMAALL
+CAVVWILVSPYLGRVLRIALGVVMGWFVSWAEENLADLGIFGDRTGTDWFRAQIQEASAE
+KVADTSFFGQGLSTAFVELDGVTMFFHNSYLGLLVEGGWPFLVVVVGAYLWLCLRPFART
+HRSPSRVAVEGAALIILVTSLQLGEVFITIFGAVVLGCGLLLSAQESDESHGAPAKDRAH
+RRKLDRIVERSRRANR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002068.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002068.fa
new file mode 100644
index 0000000000000000000000000000000000000000..00b8cd2f47e280a046a4094104919d42a735feec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002068.fa
@@ -0,0 +1,16 @@
+>KBS0714_MOLHKGIG_00768
+MRLFLAIRPPRAALDHLEPALDGVRDRAGRALCWTEPEQRHLTLAFHPEVPAGAVDDVVA
+VAGRIAAGHGPLDLHLAGAGEFSHRTLWVGVGGQVRELGALLAEPWLADDDGRDRRRAHL
+TVARASGAAPRPRGRRRGEPRPPAPATVLLAEAVHALAVYRGPEWTADEVEVVASRLGEG
+RSGGPLHEVLATVPLRG
+>SA211_MHAAABBN_00498
+MRLFLAIRPPRAVLDHLEPAFDGVRDRAGRALCWTEPEQRHLTLAFHPEVPAGAVDDVVA
+VAGRIAAGHGPLDLHLAGAGEFSHRTLWVGVGGQVRELGALLAEPWLADDDGRDRRRAHL
+TVAPVSGAALRPRGRRRGEPRPPAPATVLLAEAVRALAVYRGPEWTADEVEVVASRLGEG
+RSGGPLHEVLATVPLRG
+>TT9_LFPAFLNI_00732
+MRLFLAIRPPRAALDHLEPALDGVRDRAGRALCWTEPEQRHLTLAFHPEVPAGAVDDVVA
+VAGRIAAGHGPLDLHLAGAGEFSHRTLWVGVGGQVRELGALLAEPWLADDDGRDRRRAHL
+TVAPVSGAALRPRGRRRGEPRPPAPATVLLAEAVRALAVYRGPEWTADEVEVVASRLGEG
+RSGGPLHEVLATVPLRG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002073.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002073.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d72bb3f61ff327e5033dc2062e679e2469658570
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002073.fa
@@ -0,0 +1,16 @@
+>KBS0714_MOLHKGIG_01291
+MPLAIVAPIQSSRSRLRICAALTGLATSAVLLLSGFADAGPSADAGSDHSLVVEHNLDGL
+NAREIIKRLDSTKVTDRSSEFIASIEPDQLVLTDDQNNQTTVPMPEDEFYVSIAPYRSQT
+HECYFHSLTTCTGELANTDVHVTVVEATSGETLLDETLTTYDNGFVGVWLPRGIDATLTV
+SAEGRTAKKAISTRPDDPTCLTGLQLA
+>SA211_MHAAABBN_01010
+---------------------------------------------------MVEHNLDGL
+NAREIIKRLDSTKVTDRSSEFIASIEPDQLVLTDDQNNQTTVPMPEDEFYVSIAPYRSQT
+HECYFHSLTTCTGELANTDVHVTVVEATSGETLLDETLTTYDNGFVGVWLPRGIDATLTV
+SAEGRTAKKAISTRPDDPTCLTGLQLA
+>TT9_LFPAFLNI_01249
+MPLAIVAPIQSSRSRLRICAALTGLATSAVLLLSGCADAGPSADAGSDHSLVVEHNLDGL
+NAREIIKRLDSTKVTDRSSEFIASIEPDQLVLTDDQNNQTTLPMPEDEFYVSIAPYRSQT
+HECYFHSLTTCTGELANTDVHVTVVEATSGETLLDETLTTYDNGFVGVWLPRGIDATLTV
+SAEGRTAKKAISTRPDDPTCLTGLQLV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002074.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002074.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2fc1011a2a73f66bfdbedc328a17e78005e32bc2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002074.fa
@@ -0,0 +1,22 @@
+>KBS0714_MOLHKGIG_01294
+MGAGAEAGAGPLFIPQCRDRPTLGPDGPRACLTMKPGEGRHPRRHGPGSRCSPTPPQAGR
+AGLSPMPSRWSTPSSTGTGASIPWRDLPEIYGPWLSRVDLARPHGRRGHVGHGAGNTDRR
+SGCRNRDRLVGLGGLHDRPRPSAREEHHPAHRGLDRTTRNPREEPADHGLGRSRSGLSTK
+THQLVDGAGREGVLLAGDRHPSARRWHQGRPPQPADQQGHRRRRGSAGGRPVGLDSEAYT
+GRNVIERQDAHLKQWPGLASRYDEYAIVYWAAVVLNAVLAWSTALSDTPEWRVRTDRRSR
+SSAREARRGSAPAGMSVRTWTERIPRNAHRETE
+>SA211_MHAAABBN_01017
+MGAGAEAGAGPLFIPQCRDRPTLGPDGPRACLTMKPGEGRHPRRHGPGSRCSPTPPQAGR
+AGLSPMPSRWSTPSSTGTGASIPWRDLPEIYGPWLSRVDLARPHGRRGHVGHGAGNTDRR
+SGCRNRDRLVGLGGLHDRPRPSAREEHHPAHRGLDRTTRNPREEPADHGLGRSRSGLSTK
+THQLVDGAGREGVLLAGDRHPSARRWHQGRPPQPADQQGHRRRRGSAGGRPVGLDSEAYT
+GRNVIERQDAHLKQWPGLASRYDEYAIVYWAAVVLNAVLAWSTALSDTPEWRVRTDRRSR
+SSAREARRGSAPAGMSVRTWTERIPRNAHRETE
+>TT9_LFPAFLNI_01252
+---------------------------------MKPGEGRHPRRHGPGSRCSPTPPQAGR
+AGLSPMPSRWSTPSSTGTGASIPWRDLPEIYGPWLSRVDLARPHGRRGHVGHGAGNTDRR
+SGCRNRDRLVGLGGLHDRPRPSAREEHHPAHRGLDRTTRNPREEPADHGLGRSRSGLSTK
+THQLVDGAGREGVLLAGDRHPSARRWHQGRPPQPADQQGHRRRRGSAGGRPVGLDSEAYT
+GRNVIERQDAHLKQWPGLASRYDEYAIVYWAAVVLNAVLAWSTALSDTPEWRVRTDRRSR
+SSAREARRGSAPAGMSVRTWTERIPRNAHRETE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002075.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002075.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7ff36a96c190e7cd43cf9d976f10ca69fa43f5ec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002075.fa
@@ -0,0 +1,22 @@
+>KBS0714_MOLHKGIG_01385
+MGNAVGSNIINVLLILGLSALVVPLAVKRRLIRFDLPLMVVLSVLLLLVSLDGRISAVDG
+LILFFGVVVHTIMSVVISRRDAKTAVNAREGTGDSATVDPADEEGAALGASVSRSLFFVL
+LGVALLVAGATLLVEGAVNIATTLGVSSLVVGLTVVAVGTSLPELATSIIAVRRGERDLA
+VGNVVGSNIFNIGVVLGLTALISLEGIPVSGAAVAFDIPVMLAAAVALLPIAFTGFAVAR
+WEGGLFVVLYAAYTGYLVLAATAHDALEGFTVAMAWFVLPLIALTLISFTAYEIGLRKGR
+RDLDQTTTST
+>SA211_MHAAABBN_01113
+MGNAVGSNIINVLLILGLSALVVPLAVKRRLIRFDLPLMVVLSVLLLLVSLDGRISAVDG
+LILFFGVVVHTIMSVVISRRDAKTAVNAREGTGDSATVDPADEEGAALGASVSRSLFFVL
+LGVALLVAGATLLVEGAVNIATTLGVSSLVVGLTVVAVGTSLPELATSIIAVRRGERDLA
+VGNVVGSNIFNIGVVLGLTALISLEGIPVSGAAVAFDIPVMLAAAVALLPIAFTGFAVAR
+WEGGLFVVLYAAYTGYLVLAATAHDALEGFTVAMAWFVLPLIALTLISFTAYEIGLRKGR
+RDLDQTTTST
+>TT9_LFPAFLNI_01340
+MGNAVGSNIINVLLILGLSALVVPLAVKRRLIRFDLPLMVVLSVLLLLVSLDGRISAVDG
+LILFFGVVVHTIMSVVISRRDAKTAVNAREGTGDSATVDPADEEGAALGASVSRSLFFVL
+LGVALLVAGATLLVEGAVNIATTLGVSSLVVGLTVVAVGTSLPELATSIIAVRRGERDLA
+VGNVVGSNIFNIGVVLGLTALISLEGIPVSGAAVAFDIPVMLAAAVALLPIAFTGFAVAR
+WEGGLFVVLYAAYTGYLVLAATAHDALEGFTVAMAWFVLPLIALTLISFTAYEIGLRKGR
+RDLDQTTTST
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002078.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002078.fa
new file mode 100644
index 0000000000000000000000000000000000000000..87f2977b5e322f20b056c8d0cd194b6cebd16054
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002078.fa
@@ -0,0 +1,10 @@
+>KBS0714_MOLHKGIG_01395
+MAMPETDLLRIGRWCRERVPEHLWDQVRVEAEIADRHVTIIETRPPWDGQGDWTRFPVAR
+LRYTVKTGQWSIYWRDRHMKFHEYTKRRPTKNVQSLLDYIGSHQDPIFWG
+>SA211_MHAAABBN_01128
+MAMPETDLLRIGRWCRERVPEHLWDQVRVEAEIADRHVTIIETRPPWDGQGDWTRFPVAR
+LRYTVKTGQWSIYWRDRHMKFHEYTKRRPTKNVQSLLDYIGSHQDPIFWG
+>TT9_LFPAFLNI_01345
+MAMPETDLLRIGRWCRERVPEHLWDQVRVEAEIADRHVTIIETRPPWDGQGDWTRFPVAR
+LRYTVKTGQWSIYWRDRHMKFHEYTKRRPTKNVQSLLDYIGSHQDPIFWG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002081.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002081.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8cb8bccf048e97e2330c66d83962f18b454837c4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002081.fa
@@ -0,0 +1,25 @@
+>KBS0714_MOLHKGIG_01593
+MTDSPLHLDRPDAPRIIVLGATGYAGSLVVDALVAQGARPVLAGRNRDSLQHAARRHDGL
+EVAVADAGDPASLRALVTEGDVLVSTVGPFERYGRPVARAAAERGAHYVDSTGEVGFVKD
+LKADLDATARRTGATLLPALGFDYAPGMLAGGLALAQAGGRARSLQIGYFADGELDPRVD
+LSHGTRQTMVDALTERTITWRGGRLATTGPASRSAVFRVDGQDRRGVLFGGTESLFLPRM
+QPGLDEVEVFNGWFPARPTQIGAAALGAVGWLPGVARGVQALLRPLAGDPGGPDAADRAR
+TGSRVGAIARDAAGRVVADVHLRGPNAYTLTGDLMAWGARQLAAGRALEAGVVSPIQAFG
+LDDFETACAAVGLVRA
+>SA211_MHAAABBN_01305
+MTDSPLHLDHPDAPRIIVLGATGYAGSLVVDALVAQGARPVLAGRNRDSLQHAARRHDGL
+EVAVADAGDPASLRALVTEGDVLVSTVGPFERYGRPVARAAAERGAHYVDSTGEVGFVKD
+LKADLDATARRTGATLLPALGFDYAPGMLAGGLALAEAGGRARSLQIGYFADGELDPRVD
+LSHGTRQTMVGALTERTITWRGGRLATTGPASRSAVFRVDGQDRRGVLFGGTESLFLPRM
+QPGLDEVEVFNGWFPARPTQIGAAALGAVGWLPGVARGVQALLRPLAGDPGGPDAADRAR
+TGSRVGAIARDAAGRIVADVHLSGPNAYTLTGDLMAWGARQLAAGQAREAGVVSPIQAFG
+LDDFETACTAAGLVRA
+>TT9_LFPAFLNI_01520
+MTDSPLHLDHPDAPRIIVLGATGYAGSLVVDALVAQGARPVLAGRNRDSLQHAARRHDGL
+EVAVADAGDPASLRALVTEGDVLVSTVGPFERYGRPVARAAAERGAHYVDSTGEIGFVKD
+LKADLDATARRTGATLLPALGFEYAPGMLAGGLALAQAGGRARSLQIGYFADGELDPRVD
+LSHGTRQTMVDALTERTITWRGGRLATTGPASRSAVFRVDGQDRRGVLFGGTESLFLPRM
+QPGLDEVEVFNGWFPARPTQIGAAALGAVGWLPGVARGVQALLRPLAGDPGGPDAADRAR
+TGSRVGAIARDAAGRVVADVHLRGPNAYTLTGDLMAWGARQLVAGRAREAGVVSPIQAFG
+LDDFETACAAVGLVRA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002083.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002083.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b29cf7153efa6678b0b4da9becce1388c65cde16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002083.fa
@@ -0,0 +1,10 @@
+>KBS0714_MOLHKGIG_01615
+MRLVWDRSAWEDYTHWQTTDRKVLNRINTLIDAALRDPFEGIGKP------EQLKYGAAG
+AWSRRITEEHRLVYLVDGEDLIILQARYHY
+>KD337_NAFOICDF_01188
+MT---------------------------------RKPSGPFGPPLAPASAAAIARRAAG
+AWSRRITAEHRLVYLVDGEDLIILQARYHY
+>SA211_MHAAABBN_01325
+MRLVWDRSAWEDYTHWQTTDRKVLTRVNTLIDAALRDPFEGIGKP------EQLKYGAAG
+AWSRRITEEHRLVYLVDGEDLIILQARYHY
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002086.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002086.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f02fb18bd249262514e7217580be8113fadb1121
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002086.fa
@@ -0,0 +1,22 @@
+>KBS0714_MOLHKGIG_01897
+MTIRAGIVGYGNLGRSVEKLVKLQPDMELVGIFSRRTGLDTDTPVLPAERAAEHAGEIDV
+LFLCLGSATDIPEQAAGYARHFTTVDTYDNHQLIPRHRAEMDAAAREGGHVAMISTGWDP
+GLFSVNRVLGAALFPQPQQNTFWGKGLSQGHSDAVRRVPGVRRGVQYTIPSEEAIAEARA
+GRGAEITGASAHVRECYVVADEADHAAITEAITTMPDYFAPYETTVHFISEEEFERDHQG
+MPHGGHVVTSGDLGGSRSAVEFVLELESNPDFTAAAQVAYGRAAARLKAQGETGARTVLE
+VAPYLLSPTGLDELIRRDV
+>SA211_MHAAABBN_01593
+MTIRAGIVGYGNLGRSVEKLVKLQPDMELVGIFSRRTGLDTDTPVLPAERAAEHAGEIDV
+LFLCLGSATDIPEQAAGYARHFTTVDTYDNHQLIPRHRSEMDAAAREGGHVAMISTGWDP
+GLFSVNRVLGAALFPQPQQNTFWGKGLSQGHSDAVRRVPGVRRGVQYTIPSEEAIAEARA
+GRGAEITGASAHVRECYVVADEADHAAITEAITTMPDYFAPYETTVHFISEEEFERDHQG
+MPHGGHVVTSGDLGGSRSAVEFVLELESNPDFTAAAQVAYGRAAARLKAQGETGARTVLE
+VAPYLLSPTGLDELIRRDV
+>TT9_LFPAFLNI_01817
+MTIRAGIVGYGNLGRSVEKLVKLQPDMELVGIFSRRTGLDTDTPVLPAERAAEHAGEIDV
+LFLCLGSATDIPEQAAGYARHFTTVDTYDNHQLIPRHRAEMDAAAREGGHVAMISTGWDP
+GLFSVNRVLGAALFPQPQQNTFWGKGLSQGHSDAVRRVPGVRRGVQYTIPSEEAIAEARA
+GRGAEITGASAHVRECYVVADEADHAAITEAITTMPDYFAPYETTVHFISEEEFERDHQG
+MPHGGHVVTSGDLGGSRSAVEFVLELESNPDFTAAAQVAYGRAAARLKAQGETGARTVLE
+VAPYLLSPTGLDELIRRDV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002088.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002088.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1ed3b44f5803798ab41fd464331f7095db946bf2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002088.fa
@@ -0,0 +1,19 @@
+>KBS0714_MOLHKGIG_01961
+MAHASTHPAHPLPPVAPRRLLLAQRLLRGEGSVEVTAFRAGETLTTAVHGVSADGRLVVA
+HVPNLLGSLGAFHTPAPLDVRVDVLRDALDLTLPTRLASAHLLGTLRWCRDSAEVAALKL
+RGRVADLVADVGPRVRVGVVETQRILLHDVDGVAVFCRHTLPLTSRGLVDQAELADLADD
+VLGTAPEVLADLADAVALGLLPGESTPLQVDAEPLPEPPAHALDADEAGVTLLRVRDGET
+TAVHVALPGAGRLDHSPRHAWRRLLDAIPARVAHP
+>SA211_MHAAABBN_01654
+MAHASTHPAHPLPPVAPRRLLLAQRLLRGEGSVEVTAFRAGETLTTAVHGVSADGRLVVA
+HVPNLLGSLGAFHTLAPLDVRVDVLRDALDLTLPTRLASVHLLGTLRWCRDSAEVAELKL
+RGRVADLVADVGPRVRVGVVETQRILLHDVDGVAVFCCHTLPLTSRGLVDQAELADLADD
+VLGTAPEVLADLADAVALGLLPGESTPLQVDTEPLSESPAHALDVDEAGVTLLRVRDGET
+TAVHVALPGAGRLDHSPRHAWRRLLDAIPARVAHP
+>TT9_LFPAFLNI_01887
+MAHASTHPAHPLPPVAPRRLLLAQRLLRGEGSVEVTAFRAGETLMTAVHGVSADGRLVVA
+HAPNLLGSLGAFHTLAPLDVRVDVLRDALDLTVPTRLASVHLLGTLRWCRDSAEVAELGL
+RGRVADLVADVGPRVRVGVIETQRILLHDVDGVAVFCRHTLPLTSRGLIDQAELADLADD
+VLGTAPEVLADLADAVALGLLPGESTPLQVGTGPLPESPAHALDADEAGVTLLRVRDGEA
+TAVHVALPGAGRLDHSPRHAWRRLLDAIPARVAHP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002090.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002090.fa
new file mode 100644
index 0000000000000000000000000000000000000000..86eb7f109bf81e9168d7808df5d6a6c1f26b94ea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002090.fa
@@ -0,0 +1,19 @@
+>KBS0714_MOLHKGIG_01964
+MSTHRLSSTALGFAAGLGTAAAVTAARKIALMAAVGKGHPLKHRLLDAASGLVQPKYPMG
+AMSTYLNGLHFYADDLGRQVEASHFCIHLRHDLHQCVIFDRNAPDARLIGIEYIISEERF
+RSLPEEERRLWHSHHYEVSSGALTAPGVPELAEHSYFEDLIHTYGKTFHTWQYDRDDFPY
+GIPQLMMGLTGDGQVDEALLRARDERVGVDTAAKRRHRADIPVPDVVPGANSWERGRVVQ
+TTLEERPVRGRDD
+>SA211_MHAAABBN_01656
+MSTHRLSSTALGFAAGLGTAAAVTAARRIALMAAVGKGHPLKHRLLDAASGLVQPKYPMG
+AMSTYLNGLHFYADDLGRQVEASHFCIHLRHDLHQCVIFDRNAPDARLIGIEYIISEERF
+RSLPDEERRLWHSHHYEVSSGALTAPGVPELAEHSYFEDLIHTYGKTFHTWQYDRDDFPY
+GIPQLMMGLTGDGQVDEALLRARDERVGVDTAAQRRNRADIPVPDVVPGANSWERGRVVQ
+TTLEERPVRGRDD
+>TT9_LFPAFLNI_01890
+MSTHRLSSTALGFAAGLGTAAAVTAARKIALMGAVGKGHPLKHRLLDAASGLVQPKYPMG
+AMSTYLNGLHFYADDLGRQVEASHFCIHLRHDLHQCVIFDRNAPDARLIGIEYIISEERF
+RSLPDEKRRLWHSHHYEVSSGALTAPGVPELAEHSYFEDLIHTYGKTFHTWQYDRDDFPY
+GIPQLMMGLTGDGQVDEALLRARDERVGVDTTAKRRNRADIPVPDVVPGANSWERGRVVQ
+TTLEERPVRGRDD
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002092.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002092.fa
new file mode 100644
index 0000000000000000000000000000000000000000..159f53d14efca1deeefc8c2d519850b1c474932e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002092.fa
@@ -0,0 +1,28 @@
+>KBS0714_MOLHKGIG_02096
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------MGGASATLRTRGLGRHGRNARVLASHNPLIYRARLLGDRAVN
+GTPLERHYRLGG
+>KD337_NAFOICDF_00596
+MTTTTDRTDTISRPADVGTADSGVPTTAHPADRPQFLAARARLAPVFAWLAETAAERDRE
+RVTDREATDRLAAAGFPGLRVPEDAGGAGLTFPEAARLYVELAEADSNVLQALRVHVVNV
+ETVLGSPDGPRRERWLHRFATGETVANATTEIGNRTGHYETRLTTRPDGSAVVNGRKAYS
+TGTLYADWTIVVVEDEDGAERAATVRSDAPGVTLHDDWDGFGQRLSASGTTEFTDVVVDP
+EELTPVGQSLDDGSSIFASQAIFQFVHLVGLTGIARAVVRDAAAYVAGRTRGFSHGAAPR
+PGDDPQVLQVVGELEAAAFGAQAALDAVVGPLDRALRAEAAGAPLAEAEVDAVYTAVYAA
+QQVIARAALD-AATRLFEVGGASATLRTRGLDRHWRNARVLASHNPLIYRARLLGDRAVN
+GTPLERHYRLGG
+>TT9_LFPAFLNI_02036
+MRLIHNK-----------------------------------------------------
+-----------------------DCCG---------------------------------
+--------------WF----------------------------------AIRRGASARH
+TG---------------GA-------------------DG--------------------
+---------------------------------------------------------AP-
+PSREP-------------------------------------------------------
+----ARDALERAATRLFEVGGASATLRTRGLDRHGRNARVLASHNPLIYRARLLGDRAVN
+DTPLERHYRLGG
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002093.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002093.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2e07da5613a4b65d172ca94d8e6cecc4c5b0543c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002093.fa
@@ -0,0 +1,16 @@
+>KBS0714_MOLHKGIG_02153
+MDAKPTRLRKKATREEILASLPVQARVRPSRWLLLWLIVVVCIAVFVWVIFRPPEDVSAG
+FGVWRVASFIGLALALAVLPAATMGLFRPRHVTFDERRVWTRDWSVDWADVKEVRAVAPE
+SEHTMKVALKVDERLWNEGGLRKANRWDSGRPLQGGGLTRAQPLVLTQPALAPSALTLLQ
+VFVELKKRNRRAGSPR
+>SA211_MHAAABBN_01866
+MDAKPTRLRKKATREEILASLPVQARVRPARWLLLWLIVVVCIAVFVWVIFRPPEDVSAG
+FGVWRVASFIGLALALAVLPAATMGLFRPRHVTFDERRVWTRDWSVDWADVKEVRAVAPE
+SEHTMKVALKVDERLWNEGGLRKANRWDSGRPLQGGGLTRAQPLVLTQPALAPSALTLLQ
+VFVELKKRNRRAGSPR
+>TT9_LFPAFLNI_02096
+MDAKPTRLRKKATREEILASLPVQARVRPARWLLLWLIVVVCIAVFVWVIFRPPEDVSAG
+FGVWRVASFIGLALALAVLPAATMGLFRPRHVTFDERRVWTRDWSVDWADVKEVRAVAPE
+SEHTMKVALKVDERLWNEGGLRKANRWDSGRPLQGGGLTRAQPLVLTQPALAPSALTLLQ
+VFVELKKRNRRAGSPR
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002097.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002097.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b053965f03f53cbac58ffc6ac3b6674e645dc041
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002097.fa
@@ -0,0 +1,25 @@
+>KBS0714_MOLHKGIG_02204
+MTEFEDKLAQVARRARDYASSLDTEEATKNALVMPFISQVLGYDVFDPQEVVPEFVADLG
+LKKGEKIDYAIMREGKVNILVEAKKVGSELSLAHASQLVRYFHTSEARIGVLTNGRVWNF
+YTDLDKANILDERPFLVLDLLDIDPVTVPKLEQLAKGSFDLDSVIAAAEELKYVSAIKRE
+ISAEMAAPSDELVKVLAKRVYSGYMNAKAVETFTRLTEEAARQYINDRVNARLKTALGDQ
+VAPVLAAPAEPVATGDQTVLSDEENGQEGQLKPGVVTTEEEIEGFRIIKAILAGIVPMNR
+VYMRDAASYCSVILDDNNRKPIARLHFDGKVKYLVLFDADKNRTRADLENLEDIYESAEA
+LRSVVSSYVGA
+>SA211_MHAAABBN_01917
+MTEFEDKLAQVARRARDYASSLDTEEATKNALVMPFISQVLGYDVFDPQEVVPEFVADLG
+LKKGEKIDYAIMREGKVNILVEAKKVGSELSLAHASQLVRYFHTSEARIGVLTNGRVWNF
+YTDLDKANILDERPFLVLDLLDIDPVTVPKLEQLAKGSFDLDSVIAAAEELKYVSAIKRE
+ISAEMAAPSDELVKVLAKRVYSGYMNAKAVETFTRLTEEAARQYINDRVNARLKTALGDQ
+VAPVLAAPAEPVATGDQTVLSDEENGQEGQLKPGVVTTEEEIEGFRIIKAILAGIVPMNR
+VYMRDAASYCSVILDDNNRKPIARLHFDGKVKYLVLFDADKNRTRADLENLEDIYESAEA
+LRSVVSSYVGA
+>TT9_LFPAFLNI_02148
+MTEFEDKLAQVARRARDYASSLDTEEATKNALVMPFISQVLGYDVFDPQEVVPEFVADLG
+LKKGEKIDYAIMREGKVNILVEAKKVGSELSLAHASQLVRYFHTSEARIGVLTNGRVWNF
+YTDLDKANILDERPFLVLDLLDIDPVTVPKLEQLAKGSFDLDSVIAAAEELKYVSAIKRE
+ISAEMAAPSDELVKVLAKRVYSGYMNAKAVETFTRLTEEAARQYINDRVNARLKTALGDQ
+VAPVLAAPAEPVATGDQTVLSDEENGQEGQLKPGVVTTEEEIEGFRIIKAILAGIVPMNR
+VYMRDAASYCSVILDDNNRKPIARLHFDGKVKYLVLFDADKNRTRADLENLEDIYESAEA
+LRSVVSSYVGA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002100.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002100.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e3e2653240be8f0dad0291f284857bad919be515
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002100.fa
@@ -0,0 +1,13 @@
+>KBS0714_MOLHKGIG_02242
+MIRTPWTRTPAGARRARRPRQFRRVTTTGPAAVDVAWARYADLRLWPRWAPQIRAVEAPR
+RRLRAGLRGVVHAPLGLRVPFVVEEVDDDARTWRWTVRVAGTAVSMTHDLTATPRGTRAG
+LTVHGPAVVALAYRLPARVALRRLCRAHL
+>SA211_MHAAABBN_01944
+MIRTPWTRTPAGARRARRPRQFRRVTTTGPAAVDVAWARYADLRLWPRWAPQIRAVEAPR
+RRLRAGLRGVVHAPLGLRVPFVVEEVDDDARTWRWTVRVAGTAVSMTHDLTATPRGTRAG
+LTVHGPAVVALAYRLPARVALRRLCRAHL
+>TT9_LFPAFLNI_02174
+MIRTPWTRTPAGARRARRPRQFRRVTTTGPAAVDVAWARYADLRLWPRWAPQIRAVEAPR
+RRLRAGLRGVVHAPLGLRVPFVVEEVDDDARTWRWTVRVAGTAVSMTHDLTATPRGTRAG
+LTVHGPAVVALAYRLPARVALRRLCRAHL
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002101.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002101.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3bb9724a8ff7652824d6b095612beedc4f77235e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002101.fa
@@ -0,0 +1,19 @@
+>KBS0714_MOLHKGIG_02243
+MTLPTPSGRWTTTARPAFAVAAALSLGGNLLSLWIGSWKSSDLPADAGYAGVLEGGWEHM
+LNQPTYFTFLSNFLVGLTSLLLALRLHRPGTLFRVLRVTGVVCIVITGVVFNVLLRDADP
+MTAVERFNDTLQHIVTPILTPVLWAVFGPRRQITWRVVWLSTLIPLAWLAFTLLRGPWLD
+WYPYTILDVPRLGYDGVAVYVVAILVFFVAVAALLRVADGLLARAGVGVGAGAEAEARVE
+ARPSP
+>SA211_MHAAABBN_01945
+MTLPTPSGRWTTTARPAFAVAAALSLGGNLLSLWIGSWKSSDLPADAGYAGVLEGGWEHM
+LNQPTYFTFLSNFLVGLTSLLLALRLHRPGTLFRVLRVTGVVCIVITGVVFNVLLRDADP
+MTAVERFNDTLQHIVTPILTPVLWAVFGPRRQITWRVVWLSTLIPLAWLAFTLLRGPWLD
+WYPYTILDVPRLGYDGVAVYVVAILVFFVAVAALLRVADGLLARAGVGVGAGAEAEARVE
+ARPSP
+>TT9_LFPAFLNI_02175
+MTLPTPSGRWTTTARPAFAVAAALSLGGNLLSLWIGSWKSSDLPADAGYAGVLEGGWEHM
+LNQPTYFTFLSNFLVGLTSLLLALRLHRPGTLFRVLRVTGVVCIVITGVVFNVLLRDADP
+MTAVERFNDTLQHIVTPILTPVLWAVFGPRRQITWRVVWLSTLIPLAWLAFTLLRGPWLD
+WYPYTILDVPRLGYDGVAVYVVAILVFFVAVAALLRVADGLLARAGVGVGAGAEAEARVE
+ARPSP
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002102.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002102.fa
new file mode 100644
index 0000000000000000000000000000000000000000..65a0e75cd320e78c2e789f654cda71f35bc3e058
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002102.fa
@@ -0,0 +1,19 @@
+>KBS0714_MOLHKGIG_02262
+M-----------------------------------------------------------
+------------------------------------------------------------
+------RNGQSGAGPPATA---------PSPRSTRD---------------------VDV
+GWVPRFDVDVLEAALRPVHERPRWEEWGQIAAPTLLITGENGYVPAGELDEMRRRRPDVR
+HVQVPGAGRDVHLDAPERVAELVRGFAA
+>KD337_NAFOICDF_00417
+MSGLGRRSAGPVTREDGTRLHVLDSGGSGPALLLLHGLAGYAREWAQVAERLAAACRVVA
+FDQRGHGSSTRRPADLSRTAHVGDVVAVADALGLQRFTLVGQSMGAHTALLAAAAHPARV
+GRLVLIEGGVGGEGPEATAGVIDWFRAWPIPFATVDDAVAHLGGGPAARVWAEGLEETDA
+GGVPRFDVDVLEAALRPVHERPRWEEWGQIAAPTLLITGENGYVPAGELDEMRRRRPDVR
+HVQMPGAGHDVHLDAPERVAELVRGFAA
+>TT9_LFPAFLNI_02193
+M-----------------------------------------------------------
+------------------------------------------------------------
+------RNGQSGARPPAIA---------PSPRSTRD---------------------VDA
+GWVPRFDVDVLEAALRPVHERPRWEEWGQIAAPTLLITGENGYVPAGELDEMRRRRPEVR
+HVQVPGAGHDVHLDAPDRVAELVRGFAA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002105.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002105.fa
new file mode 100644
index 0000000000000000000000000000000000000000..da41c10f483a198a1c7aa5cf79035daf95239439
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002105.fa
@@ -0,0 +1,25 @@
+>KBS0714_MOLHKGIG_02288
+MPSAPPPSDLAGSTAAPRPPLWTRPFILVSATYLFVAMIFYTLMTAMALYAVTSFGASDA
+EAGVVVGAFVLGAVLTRMTTTPATFAWGRRRVLLVALACYVLTTAAYLWADSLAALTAVR
+LLNGMCFGAAGTVLATAVQRIVPPVRRSEGTGWFSTSMTLAGAVGPMVALQLSTTLGYDA
+LFWACIGFTGMALLIALFLRVPEPPLTGRFRLHRADVFSAEVAPAAGVALASGFMYGGIL
+AFMATFAQQQGYPAMVPSLFFLLFAAGTIVGRAVLGVLHDRHGDNAVVYPILAGMAVSYA
+VLALWREPAGMLAAGALLGLTYGPVVSVFQTIAIKVVRPTEIGVATGTFFLLLDLGTGLG
+PMVLGAVAAAVGIPVMYLLSGGVGMALLLYYRLVHGGRAIARRPPPA
+>SA211_MHAAABBN_01980
+MPSAPPPSDPAGSTAAPRPPLWTRPFILVSATYLFVAMIFYTLMTAMALYAVTSFGASDA
+EAGVVVGAFVLGAVLTRMTTTPATFAWGRRRVLLVALACYVLTTAAYLWADSLATLTAVR
+LLNGMCFGAAGTVLATAVQRIVPPVRRSEGTGWFSTSMTLAGAVGPMVALQLSTTLGYDA
+LFWACIGFTGMALLIALFLRVPEPPLTGRFRLHRADVFSAEVAPAAGVALASGFMYGGIL
+AFMATFAQQQGYPAMVPSLFFLLFAAGTIVGRAVLGVLHDRHGDNAVVYPILAGMAVSYA
+VLALWREPAGMLAAGALLGLTYGPVVSVFQTIAIKVVRPTEIGVATGTFFLLLDLGTGLG
+PMVLGAVAAAVGIPVMYLLSGGVGMALLLYYRLVHGGRAIARRPPPA
+>TT9_LFPAFLNI_02228
+MPSAPPPSDPAGSTAAPRPPLWTRPFILVSATYLFVAMIFYTLMTAMALYAVTSFGASDA
+EAGVVVGAFVLGAVLTRMTTTPATFAWGRRRVLLVALACYVLTTAAYLWADSLATLTAVR
+LLNGMCFGAAGTVLATAVQRIVPPVRRSEGTGWFSTSMTLAGAVGPMVALQLSTALGYDA
+LFRACIGFTGMALLIALFLRVPEPPLTGRFRLHRADVFSAEVAPAAGVALASGFMYGGIL
+AFMATFAQQQGYPAMVPSLFFLLFAAGTIVGRAVLGVLHDRHGDNAVVYPILAGMAVSYA
+VLALWREPAGMLAAGALLGLTYGPVVSVFQTIAIKVVRPTEIGVATGTFFLLLDLGTGLG
+PMVLGAVVAAVGIPVMYLLSGGVGVALLLYYRLVHGGRAIARRLSPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002110.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002110.fa
new file mode 100644
index 0000000000000000000000000000000000000000..63a10e0469e916e333ae4a2f0dd68efd8722d604
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002110.fa
@@ -0,0 +1,10 @@
+>KD337_NAFOICDF_00549
+MGMKQRISKVGADVAVAGLLAVSGAVPGQALTDSGRQDCSAGGGYVGARGEQQRYGDRMS
+FDVGGRTTKVVNRYTYGFDSGLRMSQNWRVSSESLLLSGTYGYCYYPY
+>SA211_MHAAABBN_01854
+MGMKQRISKVGAGVAVAGPLAVSGAVPAQALTDSGRQDCSAG------------------
+----------------------------------LLLSGTYGYCYYPY
+>TT9_LFPAFLNI_02084
+MGMKQRISKVGAGVAVAGPLAVSGAVPAQALTDSGRQDCSAG------------------
+----------------------------------LLLSGTYGYCYYPY
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002111.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002111.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e4817e82df5d636b393ef18b0c5a87f4c8fc359a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002111.fa
@@ -0,0 +1,25 @@
+>KD337_NAFOICDF_00635
+M-DALLWHTQALTPAPAPPEPVLLREFSTLSTQDQDEYWTRMHRWMCASTLDCDRTAAIR
+RGMDRVLQRNEYARSGAKTIIGLSAPNGVGKSTFIKSYAQDRYQRMMHDQPVDKLPSRTD
+SGGSPSHWIPQVYITLRAASEVPDVNAAILSYLGYPIMGRTT--KDTTLLVHAVARHGVK
+LLILDDAHMLRAKQARA-RDVLDYVKFLNTMMGERDGTLVLVGANMEGG--PVYQDPQVA
+ARLHAFALQPYTVQQDTTERVAWQQLLAGAEKKFMPYLDSATEGTLTRELAGQIWARTQG
+HLGDTHQLITTALLDAFDQGDTTLVSEHLQGVRLSARAEAAEADLAREATLTSRREQNRK
+AKR-------------------------------
+>SA211_MHAAABBN_01777
+MVNANEYEPLELSHLHPAAQPVA-----RLPAAERVQRIRA-DRW-----IGYPKAVEAV
+ERL--ETMLGWPAKQRMPNLL-LVGPTNNGKSMIIERFRRQ--------HPPSSEPDR--
+------EQVPVVCVQMPSEPSPLRFYTAILSVLGAPLRPRPRLVELERLALSLLREVGAR
+MLVVDELHNVLAGRGDTRREFLNLLRFLGNEL-----RIPLVGVGTREAYLAVRSDDQLE
+NRFEPFVLPLWE----ADDQAR--SLLASFAASFPLRKPSVID---TEDMARYLLARSEG
+TIGELAHLLTAAAVAAVESGLEAIDHRTLT-----------------MANYTGPTERRRV
+FER---------------------------ELL-
+>TT9_LFPAFLNI_02217
+M-NSHDWHHQAVTSQPSGLKPITVRKFERLNQQEQNEHWTALNRWMAAQPIDCPRVRQTS
+TRMQAEVLRNEYAPRGAKTIIGLSAANGVGKSTLIKRLAHQLYRETVPTTDPGILPTRTV
+GTGATVDWIPQVYITLRAASRIQEVNTALLSFLGYPTIGQTR--ATTTRVVEAIRTHGVQ
+LLILDDAHMLKTSQADA-RDVLDYLKFLNTELGELGGTMILVGANLEDS--DVYADAQIA
+TRLAPLQLQPHAIFP-VSERARFQAMLRGVEEKFMCHLDTATTGTLTNELAGEIWQRTQG
+YLGDIHRLITTVILETFDAGEDVITRERLRAVPLSARATAAEASLREAATQRSRRTENRR
+KKKAGSTPPAQTPSQDAAGSSSDSPTAAVPETKE
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002114.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002114.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9d80782fc0a0d4a3bb74702dd7d1766438126eeb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002114.fa
@@ -0,0 +1,28 @@
+>KD337_NAFOICDF_00783
+MTERVALIGAGPSGMALLRALALAEDEGAVVPEVVAFERQADWGGQWNLDWRTAADRFGE
+PVHSAMYRDLWINGPKECMEYPDYSFDAHFGRPVSSYLPQEAMKDYILGRVAHVAERIRP
+LIRFGTVVRWVQPLDDGTFEVTSVDLTTGAARTEAFDRIVVATGHFHAAHTPSWPGVEDF
+PGLVQHAHDYRTPEPFAGRRVLVIGSSYSGQDLALQLHRGGAAHVTTAYRKAPQELDWPA
+GMDERPEVQGFAGSRVAFADGSSAEYDAVLLCTGYRHHYPFLPAELALSGPNLPFVPSLW
+KSVVWQADPRVLYLGATQQWFTLTLLDAQAFFARDVLLGRAPVPSAQERQADIDAWTARM
+AAIDSTPVALAFQADQIRDLTAGTGYPEMDLDGVIATFLQMGEDKRESLTRYRDRTHRSL
+VTGTRAAAHPVPWMHHPDGSLEGYLAHFPG
+>SA211_MHAAABBN_01704
+MRERVALIGAGPSGMALLRSLALAEDAGAAVPEVVAFERQDDWGGQWNLDWRTGADRHGE
+PVHSAMYRDLWINGPKECMEYPDYPFDAHFGRAVSSYLPREAMRDYIVGRVAEVAGRIRP
+QIRFATAVRWVQPLDDGGFGVTSEDLVTREAVTERFDRVVVATGHFHTPHLPSWPGVETF
+PGQVQHAHDYRSPEPYTGRRVLVVGSSYSGQDLALQLHRAGAAHVTTAYRARPQDIAWPA
+GMDEAPEVQGFDGAEVTFADGSTAEYDAVLLCTGYRHHYPFLPGELALAGPNLLAPFGLW
+KGVVWHADPRVLYLGATQQLFTLTLLDAQAFFARDVLLGRVPVPGDEERRADMDAWFERM
+TRIDGPPAALAYQGAYIQDLSSHTDCPEVDVEAVARTFLEMRDARIEDVRTFRDRRHRST
+VTGTLAAAHPVPWMDRPDDSLEEYLRRFPA
+>TT9_LFPAFLNI_01932
+MRERVALIGAGPSGMALLRSLALAEDAGAAVPEVVAFERQDDWGGQWNLDWRTGADRHGE
+PVHSAMYRDLWINGPKECMEYPDYPFDAHFGRAVSSYLPREAMRDYIVGRVAEVAGRIRP
+QIRFATAVRWVQPLDDGGFGVTSEDLVTREAVTERFDRVVVATGHFHTPHLPSWPGVETF
+PGQVQHAHDYRSPEPYTGRRVLVVGSSYSGQDLALQLHRAGAAHVTTAYRARPQDIAWPA
+GMDEAPEVQGFDGAEVTFADGSTAEYDAVLLCTGYRHHYPFLPGELALAGPNLLAPFGLW
+KGVVWHADPRVLYLGATQQLFTLTLLDAQAFFARDVLLGRVPVPGDEERRADMDAWFERM
+TRIDGPPAALAYQGAYIQDLSSHTDCPEVDVEAVARTFLEMRDARIEDVRTFRDRRHRST
+VTGTLAAAHPVPWMDRPDDSLEEYLRRFPA
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002115.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002115.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e24f5cb20d0f28ef6bd28533227fb5d2a4ad0d7b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002115.fa
@@ -0,0 +1,13 @@
+>KD337_NAFOICDF_00816
+MTVGLTLHVLMWPVLVLAVLGLASGLFYREYTKAHEFTGATELGTVHTHLLGLGLTVTLV
+VLALDAVFGLTGRGPFTWFFWLFHLGVLVTSVMMAVRGGLTVDGLTPAEASAGIPGIAGL
+GHMLVTAGLALLFVALYSGVRERQDRLETGRTGGTVVEGA
+>SA211_MHAAABBN_01671
+--------------------------------------------------------MTLV
+VLALDTVF-----------------------------------RLTPAETSAAIPGIAGL
+EHLLVTAGLALLFVALYGGVRERQAHLETGRAGGAVVEGA
+>TT9_LFPAFLNI_01903
+--------------------------------------------------------MTLV
+VLALDTVV-----------------------------------RLTPAETSAAIPGIAGL
+EHLLVTAGLALLFVALYSGVRERQDRLETGRAGGAVVEGV
+ 
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002118.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002118.fa
new file mode 100644
index 0000000000000000000000000000000000000000..80672adb590498fa20c0f22a8b242ac80611133a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002118.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00034
+MPKPQRLPRGVDRLPGGGYRARLTVDGYQHTIGSFATLGDARAALDIARGEKARGTFVPP
+AVTRARLKAEKEARRAQAAADSRTVRDMAEAWLSWQTERGLKLGSVYTYRRHLEAHFLPT
+FGDRPVGEVTALDLNAWLDALEESKGHAGAAQIHRVVAALFKWATGDAAELPRTFTPWLL
+TSPVPPLAARRLRRPNLPQRNRETLTDAELSALADLM--PEADRLAVLLSGWCALRIGEV
+LALRRRHVTTDPDGTAWVRVESQVQARGSGVREESPKSDAGRREVPVPPVIAADLAAHLD
+THAAPGPDGLLFPRVGGGNGLNNPNTVRKRFNAALAALNAQRAEAGENPVENFTWHGLRH
+TALTRLGQAGATTAELKAYAGHSDGKSVEVYQHAERRRLAALI-----QDV
+>SA211_MHAAABBN_00018
+MATPRKLPRGITLNPSGRYRVKLYAQDREFSLGTFAALADAKAALAVAQGEVARGTFIPP
+AERRRALKAEAEAASARAAAESRTVRQLADAFLAWKEGAGLAWGSVYTYRRHLEGHFLPE
+FGDRAVGAVTTVDLNAWLDRLESDHGASVAPEVHGTVTALFKFAAGQARDLPRGFTPWIT
+ASPVPALTRTRRRE----HRQVTILAPSELARLSELMTYPE-DRALILTAGWCALRIGEA
+LALRRRHVVTDDAGRLMLRIETQVQARGRGLYEAPPKSEAGRRTIYVPALAREALTAHLA
+QHVGATAEALLFSRRGGGNRLNNPNTIGKRLKSAVDLLNREREDAGAEPLGRFTFHGLRH
+TGLTRMGQQGATEAELMAFAGHSDPKAVRIYQHAERNRLAALADRMTGEDA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002121.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002121.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e93ed0737baa1d903dac066192bee0cc875488c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002121.fa
@@ -0,0 +1,6 @@
+>AS2_ACLBLIBL_00040
+M-----SANERPTEADNLRQMLRFHMDRAERHRLRAEKAEAELAELRKK-KEAHP-----
+------------
+>SA211_MHAAABBN_02227
+MTTENTASTDRASTEENLRAAVRFHVGRNDRIRKRAERAETEAAELRAALAQAHAETDRL
+RAQLTELPEAHT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002126.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002126.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a38e563515965ae225005a9bb57281ad5380a66f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002126.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00082
+MTVRVAAAPDVLSWAAERAGWDDALAEKHFPRFHDWLTGTQQPTLKQLEEFAHKTHTPFG
+ALFLPEPPRMDLPIPDLRT-VGGAGVSEPSPDLLDVVHECQLRQDWYRDEALRQGEEPVA
+LVGSATVDDDPEAVGARLRHELAIQPVQNKAGAESFRRRLVARLEGLGLLVMISGIVGGN
+TSRALDPQDFRGFALSDPVAPLIFVNGTDAPVAQHFTLLHETAHIVLGHSAVSGSRMRGG
+TGEEA--WCNRVASAALVPLDEVRRARRDSAGVPLAELVEDLAARYCVSRSVIYLRLRVA
+GLVSEDVVSRHFEEQDADAPGRTPRRRR------ESGGDYYRTATVRLGKPLIRAVLRST
+REGHTSYREAMRLLGTHKIEVLHEMGRQAGV--E
+>TT9_LFPAFLNI_01542
+MTVRVSVSPDVLLWALDRSPDPDAVATA-FPGVDRWVSGEAEPTVKQLHAFAARTGTAYG
+YFFLQAPPAIELPIEDFREGFEGERYRDPSVNLLAVLHQSLRRQDWYRDYAIENGFADVS
+VVGRGA-GMSPLEAAADMRRELNYEVRSRVGNWSDQRKRLLAAFEALGGLTVVTSMVENN
+THRPLDVDEFRGFSLIDDMAPLVFVNARQTINGQLFTLAHEFAHVWRGVGGISDEDLRYE
+PRNEVEQWCNDVASEFLVPSNDLRERYAGVSSLRLTEQIERLASIYRCGTLVVLQALRRN
+RLYD-------FEDFQTDYDAEVERLRRFERADSGPGGQFLYNQPYRIGTRLSRALISDA
+MAGRTRFTDAARLMSFKSMKNFDSYASYLGTVRG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002129.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002129.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dda99521f284628ea9d3db4069b84fbd4d70eaa2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002129.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00104
+MTTALPDALRLTDEARERLHADCRHLHRHPELSMQEHATAAWIEEQLDEIGVERFRCGGT
+GVVGVMRHPGGAEGPVVAFRADTDGLPIEEDTGLEYASTARGTLPDGREVPVMHGCGHDT
+HVVSALAAARLLAAAPDTWGGTIVWVFQPAEETGAGAAAMLEDGLWDRAPRPEVVLGQHV
+MPLAAGKVQLIPGMAMALADSQAITFHGRQAHGSQPQDSIDPILMAAHAVTRLQGVVSRE
+TDPRDPAVVTVGTFHAGLKENIIPDSAEIALNVRTFSAASRDTVLGAIERIVRAEAQASG
+APEPSFRTIARFPRCHNDDEQSARVAAALRAELGEDHVLDGRPLMGSEDVGALADAIDVP
+LVYWFFGGFEGEDPAAFPGNHSPHFGPAMAPALDAGHRAALAGLLAYVGR
+>KD337_NAFOICDF_00074
+M-----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------AAVAAELGEENVMEIGPLMGSEDVGALTDAIDVP
+LVSWFVGGFEGEDFGDNPANHTPQFGPVMEPTLTTGVHAALAGLLHYVGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002131.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002131.fa
new file mode 100644
index 0000000000000000000000000000000000000000..feb76cd9ff2ceaeee18b0250d4a3ea4d120206df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002131.fa
@@ -0,0 +1,14 @@
+>AS2_ACLBLIBL_00115
+MTPTSALSSRAPGLAACLALGLAALGTATAVRPWAPALSPLLLAILAGLAWRNLAPVSER
+LAPGVAFAATSVLRAGIVLLGLQLLLSDVLALGPGVIALVVGVVGVTFAATLALGRVLRL
+PWDLTVLVASGFSICGAAAVAAADSVVRARREMVATAIGLVVLFGTLMIPVMPLLTGALG
+FEEQAAGLWIGAATHEVAQVVAAGG----LVGGTALSVAVTAKLARVVMLAPVMTGLAWW
+QRHRDALEPATLDDGAPTAVERPPLVPWFVVGFLLAVLVRATGWLPAGVLDAAALVQQLL
+LATAMAALGLGVHLRSIAAVGPRPLVLGAASTAVVVVVGGFGATLLA
+>KD337_NAFOICDF_00083
+--------------------------------------------------------MPAR
+LEPGIAVAAKPVLRAGIVLLGLQLLLSDVLALGWGAVGLVVGVVALTFAAALALGRALRL
+PWDLTALVASGFSICGAAAVAAADGVVRARREMAATAIGLVVLFGTLMIPLLPALTGALG
+LGERAAGLWIGASTHEVAQVVAAGGPRPLVLGAGSTAVALAAGRAGAALLG---------
+------------------------------------------------------------
+-----------------------------------------------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002143.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002143.fa
new file mode 100644
index 0000000000000000000000000000000000000000..805a20ba2deb419da660e9f4414dc73c85a78102
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002143.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00345
+--------------MAALTAVVVLGVAGCTGPEGRTG-TTTDGPGTSTSPPPVVQQSEAA
+AHPADNLPLGGEPWAVVTLTRGGEALDPGPWRQVRIVTSEPFILAAPELCPQPRFGITAV
+TESAWEATPDVAQPAIGCVSGHEDEAAVAALRELFDGTVQVTPPGGADVEMRLRRADVEL
+VLSEEG
+>KD337_NAFOICDF_00283
+MRPSAPPRRPRVTRMAAMTAVVVLGVAGCAGPEGRTGTTTTDGPGTSTSPPPVVQQSEAA
+AHPADNLPLGDEAWAVVSLTRGGEALDPGPWRQVRIDTSEPFILAMPELCPQPRFGITAV
+TESAWEATPDVAQPAIGCVSGHEDEAAVAALRELFDGTVQVTPPGGADVEVRLRRADVEL
+VLSEER
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002144.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002144.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1b10e1483873a0fec48041eec43c31d6688169c7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002144.fa
@@ -0,0 +1,18 @@
+>AS2_ACLBLIBL_00347
+MGDDNARMIRRFRSSSTRRPLHRSLTRRGTRPRRRLHTDDRVSLPPSSVAGLFVVPFLAT
+HLFAWGLFASVYLIAHPGGDSVFTASMWRLTTDVAVNAGLAMEDSLLALTSTGVAVTVAL
+YIPVAAGQLVSPRGGGETQRRLGSLALATSGVFAGITTGAYIASMTHGAHPASMIPELLL
+QGLMIALSLQLGTHLFDDREELRSRLEDDERRLEMQLSDAALNSLSDDIQGKFGGDFTLP
+PMRQWAKAARTLTFRRILRLLIWFFGYLLAGAFLGALTFACTSLTLEREWDARTLALGAL
+IGIYAHFASGMITYHDQSTPALRWLVRAMGATIWLLLLTTGLVLLSASPSQGSASLGTAV
+LGVIHVLWRRRSPGEQGLRLSPFMLSHRINTTLAEEALTSVWSRQLHAGILPRPLLGTTC
+RTSPLRDAAR
+>KD337_NAFOICDF_00285
+-----------------------------------------------------MVPFLAT
+HLFAWGLFASVYLIAHPGGDSVFTASMWRFTTDVAVNAGLAMEDSLLALTSTGVTVTVAL
+YIPVAAGQLVSPRGGGETQRRLGSLALATSGVFAGITTGAYIASMTHGAHPASMIPELLL
+QGLMIALSLQLGTHLFDDREELRSRLEDDERRLEMQLSDAALNSLSDDIRGKLGGDFTLP
+PTRQWAKAARTLTLRRILRLLIWVFGYLLAGAFLGALTFACTSLTLEREWDARTLALGAL
+IGIYAHFASGMITYHDQSTPALRWLVRAMGATIWLLLLATGLVLLSASPSQGSASLGTAV
+LGVIHVLWRRRSPGEQGLRLSPFMLSHRINTTLAEEALTSVWSRQLHAGILPRPLLGTTC
+RTSPLRDAAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002145.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002145.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8abc620b9743d21e63599b74c8e66e5d815fb40a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002145.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_00350
+MAPRPTPIRSVLQVFALDCPDPPALAAFYAGLLGWRVVEDRPDDEWVNVLPPEHEPQTMK
+LAFQLVPDHREPTWPEGDVPQQAHLDFHVPALAEAVPLAEAAGARRHPVQPAEDGSWVVF
+TDPAGHLFCLCQA----
+>KD337_NAFOICDF_02481
+MDTQNAPV-ARLAMITLDAPDAAALGTFYQAVLGWPVAY---EGDGVVMLA---GPGGVN
+LGIGTVEDYTAPRWPDTG-RKQYHLDLAAEDVAAAAARCVALGATRPDHQPGE--TWTVL
+LDPAGHPFCVTDAANWG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002146.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002146.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f3fbf3ea0228011effdbbaf5f3364e9bc0703334
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002146.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00368
+MV----------------------------------------------------------
+---RVTEVDPATSIDELSDRAELIVRG----APG--EVD-----APGDG---RTRITVDA
+SETLAGE-GRSASSSTCSASPTRAPPT---------------------------------
+-----------------------ARRARSCSGS
+>AS2_ACLBLIBL_01750
+MVLIARSARPVVALATALALALTGCAAEAAGPVDGDSAAAPAPTSTGASPSAEEAFWARY
+QATMVSEVDPALSFDDLTEKSTVIVRGPVMAAAGVREVDGRVVVAPADGDQTSSLLTVRV
+EERITGEAGDTVRVWVAGPAPTAEPPTESYLWYLMPADTPDALFTVSRSGVIGPDAGGTL
+STVMVPGDGEFILPDGAVTLADVQRRTEELLER
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002150.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002150.fa
new file mode 100644
index 0000000000000000000000000000000000000000..82507a27baeda98a3f410aba400caedb6f0ffc08
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002150.fa
@@ -0,0 +1,4 @@
+>AS2_ACLBLIBL_00395
+MIAFIDEHRDQFGVEAICRTLRATECGFITST
+>KD337_NAFOICDF_00664
+MIAFIDEHRERFGVEAICRVLSATECGFITST
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002153.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002153.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6d4e4e6251466b77e7c5c0b75ad0e59bf6cfaa98
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002153.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00458
+MTAPQLHLPRTVASDQTERAVDLLQLYFKSRKFIGSQWDGFDPSGRRAASANVFTADDVA
+SAALLNTPVPGHAVVHLLITQRERFSELLRIVGPDRDFIDADPDPSGKDMAPVYELYEAL
+KDLPKIGPTIASKLVARKRPRLFPIIDSDLRRTVFHETRKDGHVGRALLHADFSAQERTM
+WQRLESYRCAAALPAEVTTLRVFDVLAWMEAKAY-----
+>SA211_MHAAABBN_01969
+MTAPQLHLPRTVVSDQTDRAVDLLGHYFTPGKFIGGRWDGFDPSGTRAASANVFTSDDVA
+SAALLNTPVPGHAVVHLLITQRVHFAGLLEAVGPDRDFIDVDPDPSGKDMAPVYELYEAL
+KTLPKIGPTIASKLVARKRPRLFPIIDAELRQTVFHETRKDGYVGRALLHAEFSAQERTI
+WQRLASYHSAASLPTEVSVLRVFDVLAWMEAKAYWGPVP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002155.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002155.fa
new file mode 100644
index 0000000000000000000000000000000000000000..820d0fee2f892c51879c4ed8d6533d2d3fceec32
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002155.fa
@@ -0,0 +1,12 @@
+>AS2_ACLBLIBL_00484
+MVTHTDLMTIGEFSSLSRLSVRMLRHYDAHGVLVPEHVDAHSGYRRYAPAQLRDAADIRN
+LRDVGLGVSAITALLAARGTSTWTDALALQRCT-LVEELHAARERLSLIDRML-----TP
+GEIPMTIQLNRTAVPAMTVVALRGTVPSYSDEGRLWERLMPALQQQGIRPVGPCGVIEHD
+DEYREADVDLSVYCPVAPGTRAEGPLVVLQLPERDCLVAHVIGPYTQISQAHDLIVQRME
+AEGLAARQDGTLASNVFNRYLVTPDQAAPEDLVTEVCRPLA
+>AS2_ACLBLIBL_02684
+M------------------SRRMLRHWEQEGLLSPALVDPVTGYRRFQATQLGRIRAIAE
+LRDLGFSLSEIRQLLDPQIAHSSLERILMQQADRLRDQITEASARLAQVQHRVDTIQKKA
+QEISMNLSL--TPLPELSLQGASTTVLDETDIGSAVARL------RDLVPHDQGDLILLF
+DGTSPDQITVTAATADGATTPGLQPVSAPLAPQGATVTFPT--PPSSVADAWVLIDAELE
+KRG--------LASGGVYRQIISPDGSTT---LQAAVHARD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002156.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002156.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6b0a567738ec66e755be1f2bb1d43d3d3440dd61
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002156.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_00491
+MDEDQGKILATHRQELRRGTLVVACL-------LACRTPRYGYALLEHLAD---ARLDAE
+ANTLYPLLRRLEGQGLLQAEWNTDEPRP-RKYYRTTPEGEAIVAELRGDWLRLTDSMTRL
+GKDPS---------
+>AS2_ACLBLIBL_00765
+MNEPTDRPPSGTAPEAWPSAWVRAALEPAILGSLA-GGPLHGYGIAHALADHGFGRL--R
+GGSLYPVLGRLEEAGHITARWAPGDAGPGRKDYELTDAGRAAYRDAVANWRRLGDALADL
+GATPRLTAQEGTAR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002157.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002157.fa
new file mode 100644
index 0000000000000000000000000000000000000000..66190f85f1e466e194ae16f754fa62c71fb3c00f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002157.fa
@@ -0,0 +1,18 @@
+>AS2_ACLBLIBL_00497
+MRGGVDAAADPNGGPRPRRWWDGPLDVERLAWDAVVAARDAVRELAAARGQDGVAGTTPE
+LVAASFAALDHLRVEGAAVPAWAPMSGFLRAADGWVRTHANYPHHAAALTRALGAVDRPG
+LEAAVARRTAAEVESAVHAAGGIAVAVRSAAAWAAHPHGTATRDEPWASVAPGGPRRRLR
+GGRLPLEGVRVLDLTRVIAGPAAAQLAACLGADVLRVDPPGRPEILAQHLSNGMGRHSAV
+ADLTERAAEVEDLLAGADVVLLGYRPGSLDRFGLDPEALVRRHPHLVVGSVSAWGEAGPW
+AQRAGFDSIVQAACGIADACGRD--GEPGALPVQALDHATGHRLFAETVRLLAQGRAGVV
+RISLLGAARTLLGLSPPPPGPAAELPVPRVEVGSEAGRLDAVPPAIALDGEVLARDVGAY
+GAAALRWL
+>KD337_NAFOICDF_00412
+MP-RVSAPV-----PSPRRWWAGPLDVEQLAWGAVEDARDAVQALVDARGQGWRVGTSPE
+LVAASFAAIEHLRVVGEPVASWAPMSGFVRAVDGWVRTHANYPHHAAALGRALGATDRAS
+LERAVAGRTALDVEEAVHDAGGIAVAVRRATQWAAHPQGVATSGEPWVSVDAGRERAPLS
+GGALPLDGVRVLDLTRVIAGPAGSQLMACLGADVLRIDPPARPEIDAQFLSNGMGKRSAT
+ADLAEHRTELEALLAGADVVLLGYRPGSLDRFGLGPDALAQRHPHLVVGSLSAWGERGPW
+ARRAGFDSIVQAASGVALACSPDDGATPGALPVQALDHATGYALAAGVVRLLVEGRAGVV
+WASLLGAARTLLGFAAPPEERVAELGVPHVTVRSAAGTLNTVPPPLTLDGASVERDVAGY
+GAASLRWA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002160.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002160.fa
new file mode 100644
index 0000000000000000000000000000000000000000..39d9b01a5e7d8322a8bd0eaf19f8c85be8f50abe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002160.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_00512
+MSTLSEMHVIDFPGFPTVVVRGPGQSVDGLHHFMDTSFRALGAAMGQGVFAPAGPAFALY
+RGMTGQGLGESMDLEVGHPVDVPPAVPLDVDGVRVEPSSLPAGRLAVAKHTGPYELLPEA
+WEAFLDALRADGHEPGDLCWEAYDTEPGPDVDPETLVTGLAVPVRTVA
+>KD337_NAFOICDF_00449
+------------------------------------------------------------
+--------------------------------MRIEPSDLPAGSLGVAKHTGTYELLSEA
+WPAFLDALRENGHEPGGLCWEAYDTPPTPDTDPETLVTGLAVPVRPAA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002161.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002161.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9f305651d34eea7e626de8387e39ada4f725611a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002161.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00517
+MTSVLFVVSAADAWTLKDGTTHPTGFWAEELATPHRLFREAGWDIVFATPGGVPPTVDRA
+SLGEAAGSEEERAALTAHLESIRAELDAPLRLEDVDDREFDVVFYPGGHGPMEDLAADPV
+SGALLSRRVTAGDPVALLCHAPAAALAAKDADGANVFAGRRMTAFSDEEERAGGLAEQAP
+WLLETELKEAGVVYEKADEPMAPKVVVDGAVYTGQNPASSAELAERLIADLG-----
+>KD337_NAFOICDF_00466
+MTKVLFVVSAADQWTLKDGTVHPTGFWAEEFVVPHQTFTEAGWHVDIATPGGRVPTVDQL
+SLGMMAGSPAKREQLRAALDRLRPALERPLVLADVDDSAYDLVFYPGGHGPMEDLAYDPV
+SGALIARRLLDEAPLALLCHAPAAVFAAKRADGTIVAEGRRMTAFSDLEEKLNPFARKAK
+WTLEAQLKHGGVQYEKARFPMQSHVVADGALYTGQNPQSSAALAERLVHDLSARVER
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002165.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002165.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8aa0b093f53dfd5e839ac89eabab287fb620cb50
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002165.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_00552
+M---------------PHDSARWLDEEERRAFLALMSVTMRLEPALDAQLRRDADLTHFE
+YSVMANLSESEGDTRRMSELAWLSAGSLPRLSQVVTRLERRGLVKRTPDPTDGRYTLAVL
+TPEGRAVVEESAPGHVEEVRRVVLDPLTRAQVKQLAAIGKRIVGVLDPEDRCLED
+>KD337_NAFOICDF_00475
+MSDAARPASDPVADTAPESVVPWLDDEERHAFLALMSVVLRLEPTLDAQLRREAGISHFE
+YTVLASLSEAEGGQRRMSELAYLSSGSLPRLSQVVTRLEKRGWVERRPDPEDGRYTLAVL
+LDEGREVVVAAAPGHVAEVRRAVVDPLTRAQLRQLTAIGRRIMGVIDPEDRCLED
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002170.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002170.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e61182b3e131d7f7eebe3906554af8869bf34dc4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002170.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00618
+MTE---------------------------------QRRHEVTLRFLAAPTDQGHTGTVD
+AGRVLEWVDKAAFAAATAWAGSYCVTAYVGNIHFRQPVLVGQMVEVTGTVLHTGRSSMHI
+NTVVSAGDPKTGELTEAARCLVIFVAV-EEGKPVPVPEFVPRTLEQELAAEYAVSRIAVR
+DEIQAAMEGQRYTDAGTADRTVLRFLAAPTDVNWGGKVHGGIVMEWIDTAAYLCSTRWAG
+RETVAVFSGGVRFYRPLHIGDLVEVEARLIYTGEKGMHVAVHVRSGDPKTAQLELTTYCL
+TVMVARDDDGDAVPVPAWEPVSQEDKALWQHARDLLEIRGRAPGNRLPNHLLAERGE---
+---D
+>KD337_NAFOICDF_00543
+MTDDAARTPASTDAARPSPGPVPAPASPTEPATPVVERRREVTLRFLAAPTDLGHSGTVD
+AGRVLEWVDKAAFAAATAWAGRYCVTVYVGNIHFRQAVEVGQMVEVTASVLHTGSSSMHI
+STTVRSGDPKTGELTEAARCLVVFVAVGEDGRPVPVPEFVPRSLEQELARDWAISRIAVR
+NEISAAMKTQRHTDAGTAERVVLRFLAAPTDVNWGGKVHGGTVMEWIDTAAYLCSSRWAG
+RDTVAVFSGGIRFLKPLHIGDLVEVEARLIYTGNKGMHVAVDVRSGDPKTDDLQLTTNCL
+TVMVARDEHGDAVPVPAWKPVTDEDRALWAHARTLLEIRAKAPGNRLPDHLLRERGEGPD
+RGEH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002173.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002173.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1ffd84e2743b77fa97073d75a2f1fabf1a32dc6b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002173.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_00645
+MTAPHAIPPSGLPSAAEVRRVLSALVQRCFSRETHARLLDADVSEGVLTVVAWQAGPSPV
+VPGRVIGHRTDLGMRLAECEGDLEAVLLDVLQFQEFEPSAPGRAASGAEPAWLLERYPEA
+TWYAQGASGT
+>KD337_NAFOICDF_01292
+-----------MPSTEAVLSILRRLERRHFSRDAYARLLDADVTGEVLTVVAWQGGPSPS
+DPERVIAHRTDLRQRLTECRGDLEAVLMDALQFGVYEPSSPGRPPAGDEPARLLEKYPEA
+TWY------E
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002176.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002176.fa
new file mode 100644
index 0000000000000000000000000000000000000000..1fcb2001deec6abadedb557f8bb2edb662dfb273
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002176.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00713
+MTQRRTRWRSAASQDAEYRAHWKA-AASADVGTPDALTWAVLGDSAAVGVGAARVEESYV
+AQVAAGVAERTGRPVRVLNLAVSGATAAHVLADQLPLLPADGVDAVTCVVGGNDVAWPVR
+FRVDRFAAPLEKIAQRLPAGATLGTVPVFRIPPYESRVECANAAVRVIAARHGLGVADVH
+AATRRTSLRHQVSMLSHDLFHPNGAGYRDWARAVLPEVLRQVRGEAPTR
+>TT9_LFPAFLNI_02032
+MPS-PSGWQ--AQHDADYRAHWHALAARAD---PDALTWVVLGDSAAVGIGAESVERTYV
+AQVAERVAAETGRPVRVVNLAVSGAMAKDVLADQLPLMPASGVDAVTCVVGGNDVTWAWR
+FREAAFEEPLEAIARALPAGATLGLVPTFRIPPFEARVRRANTVVRRVAARHGLGVADVH
+AATWRRNLRHQVSRLARDLFHPNGAGYEDWAAAVAPEVLRQVRGQAPAA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002178.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002178.fa
new file mode 100644
index 0000000000000000000000000000000000000000..da8da73d54fd49346aee78faa65e0f80ad33b60c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002178.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00754
+MSSAKNSDQRRQDRAAVLQAHWAAEAKAARKQKVLWGAGGVTAVALVGALVTVAVVTDPP
+PPTRQDIEIAGLETFEDLDAMHVNSPVDYEQDPPVGGDHASTWLNCGVYTEKVPKENAVH
+SLEHGAVWAAYDPSALSEEEITALQEALPDTHAVVSPYEGLESPITLSAWGAQVAVETPD
+DERIEEFVAKYWQSPEAPEPGAACTGGLDGPGRVA
+>KD337_NAFOICDF_02190
+MSTKLMAD---------------PEAKAERRRKVLVGAGALTAIAVVGGLVTLAVIQNPP
+PQAREDIEIAGLQTFEGLSANHVSTPVDYEQSPPVGGDHASAWLNCGVYTEPVPNENAVH
+ALEHGAAWVAYDSEALSQEQVDALRTALPAAYVVLAPYEGLDSPIVLSAWQAQVAVDSPE
+DERIEQFVAEYWQSPDAPEPGAACTGGLDAPGRIA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002181.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002181.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4f3adbddcb4edfec4f3507966d50cfb0c56ef551
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002181.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_00827
+M---------------------------ATPAGAVGKGPNHNPRSTVNTSILATHAELVA
+QLQK-EDARQDAMELTVIGQ-------SVKGRDIHLASWISDPENPTILFLTQQHGNEQL
+TTEGAMAFIKSL---GTGKMRSVLDDVNVLVVPMANPDGAMGDV-DFSLEDYIASGDRNL
+TRYNANEVDLNRD-HVAKTQP-ETRALHENVLGAYDIDYMIDLHHQGTRSA-VDGELVSG
+SI---LYPTSPNV----APDVVEDSQRLGSVVYDAVEQYGWGNLGRYVGGTAETIARNGV
+AAE---------------YGIATLLFEMRGMSDHEYESYVLGQRSNGYLIKQTVVTLEAT
+TKAIADGSIETADIGLWNTLPEQRTLP----------LAAE
+>AS2_ACLBLIBL_02006
+MSPLTSPSLSRRGALGVLASAVALPLVAAPPAQAAGSMP--TPSDTPPLAAIRDLADMLR
+ELRKLERTSRGAIRVTTLAEVGTAEAHSEQGRDLYVALVGHGPRH--VWLQGRIHGNEPY
+GLEATLDVLASLGGNGSPAYRRMREEFTVHVIPMYNPDGSEANTRGTTLWDREADAPLLV
+GRGRPRTVDLNRDWGVGRFQARESRAWYE-YWTMVKPEFALDIHHQWLKQDWVTGEDVTL
+SLGVSLAPGGPTLPGIRGGEYDRLARQLAGHVWLETLHRGHISTDRYDVGENTVIDIHGG
+VVSAMMMGLDWNGLNPTGHSNVAIFFETSGNTNS------LGHKARGKLVQQNVLAVTAA
+LDGMATGAVQRVDPAVWDRIPHT---PVKYYSTDYAGLIPA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002182.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002182.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f0075a27f24be72655500a6522d13c2b6c657736
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002182.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_00847
+MSRLSRAPGLRRPRLLDPWRRPLLPRLPWHVILAASLAGAATIATLSIGQDLTSVPLLVG
+AFGSSCVLVFLVPHGPHSHPANVLVGHVAAAACGIAVSSVLPLAWYSLAAGMGLAMAVMA
+GLRVIHAPAGATALSVMLVEAGWDYLLAPILSGALVLTACALLYRRLMWRVIGPPPPPA
+>KBS0714_MOLHKGIG_02002
+---MTRLPGLRPPRFLDPWRRPLAPRLPWHVVLAASIAGALTIATLSLGEDLASVPLLVG
+AFGSSCVLVFLVPHGPHSHPANVLVGHVVSAACGIAVISVLPLAWYSLAAGMGLAMAVMA
+GLRVIHAPAGATALAVMLSNADWHYLVTPVLAGALVLTACALLYRRLMWRVIGP---AE
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002185.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002185.fa
new file mode 100644
index 0000000000000000000000000000000000000000..682c4c3a04c5a990980c9d766b1bf816c021045e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002185.fa
@@ -0,0 +1,14 @@
+>AS2_ACLBLIBL_00883
+MPDSPAPPGAAPSELVPRAFAERIARRPADPLLAA---AGGEAVSGEAWLARLPHLVEER
+LAAWNLTLDPDAPGAPWTGHGALVLPVRRHTLRPAVLKLTWPHLEARHEHLALRLWDGAG
+AVRLHAASPPDGALLLERLDADWPLTLEPVLDACVAVGGLLRALDRPATPQFDAVAVKAE
+RWDGTLAAPVAAVPRRLQVQARSHLRRLVDSAPEPRLVHEDLHDGNVLAPLPDDGPSGAA
+PDARRGHVARRGRWLAIDPKPVAGEGAYAVAPIVWNRPEVTAAAHNARIHVRLRADVVAE
+AAGLDEERVRAWTFVRLVLNAVDAAHEGPSADEWRARMIALAGHFAS
+>KD337_NAFOICDF_00825
+MPASP-PEILVP---IPPEFAADIADRPADPLLAAAPDAAAQPLSGEQWLARLPRILAGR
+LTAWDLTLDPDVPGAPWAGTSALVVPVRLPTRRPAVLKVTWPHLEARHEHLALRLWDGAG
+AVRLHAADPRDGALLLERLDAGRPLSAEPILDACEVVGGLLRTLARSATPQFDAVADRGA
+RWLDTLAAPVAQVPRRLQVQARSHLRDLLDSAPPPRLLHEDLHDGNVL----------AA
+PSPADGGEAARGPWLAIDPKLVAGEPAYAVAPIVWSRPEATARAHHARVHVRMRADVVAE
+AAGLDGERVRAWTFVRLVLRAVDAAGRGEAGDEVRARMITLAGHFAS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002188.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002188.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8c6986ba53e6e83874bd7c78f30f74e7cb241237
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002188.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_00909
+------------------------------------------------------------
+----------------------------------------------------------MD
+GVRGTWAPGTVRGVLHASGVGAATGYPGVVLATPAATEHPAAQIADVPAQLLVSVDLPDH
+WDRLDAFEGAGYRRVPAVVAL-DDDAVRPAYLYELVPDAVPPSA
+>TT9_LFPAFLNI_01868
+MALTGVPELGGWRVTPSPTPAGTTPPELTITYATDDFATALALANRIGEAAEAADHHPDL
+TVSYGRLTVGMHSHDVRALTSRDVRLARTVARLASEVLAPHALAAYGTLAPGRSNAHVMD
+GVRGTWIPGTLRGTLHASGIGAATGYPGVVLAGTA----PAHATTDVPAQVLVSADLPDH
+WDRLDAFEGAGYRRVPGVVALEDDDAVRPAFVYELVPDAVPPSA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002197.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002197.fa
new file mode 100644
index 0000000000000000000000000000000000000000..03a0a55c5e176f290646bb234223f26c57064945
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002197.fa
@@ -0,0 +1,14 @@
+>AS2_ACLBLIBL_01012
+MKI-PAAITGGVAAVLVLGLTSC---GASEVRPDHGVTARLDRENGQVVLPIEDYAASQA
+DEAVMTQARLAILRSCLQKSGHNGVKPPTSNAERAVEERPYGVWIVDRARAYGFDLPPAA
+ETVEPAAPP--GGWSDEADPAFNEAYEACSSEVMEQMLAVSSPATSPGTTSVIADVTARA
+RGLAAQDPVWDEARDEWQQCLRDNGLTPVAEEGAVLSAESENLSDTRDAQGQTHSVKAEE
+IRLATIEATCNEQTRLTQRLGDLEAGYQAALIKKHEAALVEEKLVTAEHLEAARAYLARH
+Q
+>KD337_NAFOICDF_00955
+MRPDPRPFRLAVIAGIALSASACAQSGAPDVPPDTSATAHLDREHGQVVLPVDEYSLDHD
+SEQLIGQARHVIMRTCLNSKGVNGLAPTATSS--PAEERPYGLWRTASAAQNGYTMPRPA
+ST---EAPPLGGQWSEESDPAFNTAYDACNEIVRDDLDSVTPPETERTTA---IDIRDDA
+FTLASATPEWKEARKQWHDCLTSRGLTPRTDDNAWSSEQGFGILTTADPQNPSPAAKQEE
+IRIAVIEATCNEQTQLTQRLGDLEAGYQAALFKGKEAQLAQEKADNQKFVDAARAYLASH
+Q
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002199.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002199.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6d639f4f11e979da2fcc1e3cabdd3429a6189c6a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002199.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_01039
+MTKIAIITGSTRPNRLNRQVADWVLERANGR---GDAAEYELVDIADFDLPLLDEPMPAA
+WQQYAN--EHTKAWSAKIAEFDGFVFVTPEYNHSLAPALANALSYLNAEWANKAAGIVGY
+GSAMGVRATEHLRAILSELQVAHVQKHGMFSLFTDFKDFAEFQPTELQAASVDPMFDQLL
+SWTEAMKTVRQG
+>AS2_ACLBLIBL_01321
+M-RLGIVIGSVREGRFGAQVGAWVEEVARGLDTGGRDAEWDVLDVAAFDLPIMTD---EG
+WAQDEDGPAEVHRWRDAVAACDGFVFISPEYNRNIPGAFKNAFDLLSAQWKDKALALVAY
+GGLGGVRATEAWRFTVAAYNMHVVGDSVQLVRRADFPD-ETFARTEHHDKTLSRVLTRLV
+DLTEATAALR-G
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002200.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002200.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cbdf0858acad27185b581590031f2b3bdbcbb523
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002200.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_01079
+MILDSYRSPWLTEDAEALLEHCRDFLAREVVPHEERWAEQHGVDRDLWTKAGEAGLLCPS
+LPEEYGGAGGTFALEAAILTEQGRCFDDAWGFSIHSPIVAHYILAYGTEEQKQRWLPGLA
+SGELVGAIAMTEPNTGSDLQAVRTRATRDGDHYVINGSKTFISNATHCGLLLIVARTGDE
+PGGRGLSLIVAETDGLEGFERGRVLKKIGQHGQDTRELSFSDMRVPVSHLLGPDEGQGFV
+QLMAQLPQERLTLAVLAAGVCEAAVRETIRYTKERHAFGEPLMSFQNTQFVLAECVADTL
+ATRTLVDQCIVAHVDGTLTAADASMVKFFASDMQNKVVDRCLQLFGGYGYMEEYPIARAF
+TGARVQKIYGGTNEIMKMLVARAL
+>KBS0714_MOLHKGIG_01797
+MILDSYRSPWLTEDAEALLEHCRDFLAREVVPHEERWAEQHGVDRDLWTKAGEAGLLCPS
+LPEEYGGAGGTFALEAAILTEQGRCFDDAWGFSIHSPIVAHYILAYGTEEQKQRWLPGLA
+SGELVGAIAMTEPNTGSDLQAVRTRATRDGDHYVINGSKTFISNATHCGLLLIVARTGDE
+PGGRGLSLIVAETDGLEGFERGRVLKKIGQHGQDTRELSFSDMRVPVSHLLGPDEGQGFV
+QLMAQLPQERLTLAVLAAGVCEAAVRETIRYTKERHAFGEPLMSFQNTQFVLAECVADTL
+ATRTLVDQCIVAHVDGTLTAADASMVKFFASDMQNKVVDRCLQLFGGYGYMEEYPIARAF
+TGARVQKIYGGTNEIMKMLVARAL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002206.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002206.fa
new file mode 100644
index 0000000000000000000000000000000000000000..82387fe78f375d169c6cdfb97a04b61a03963c6b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002206.fa
@@ -0,0 +1,12 @@
+>AS2_ACLBLIBL_01088
+MTGTRVATERHDTALVLTLDGPDRLNAVTPTAMEALHTALGEAGRDPAIRAVILTGRGRA
+FCAGADLRDDLDPEATMRAANRVVETIRAVDVPVIAAVNGPAVGYGAALAAAADLAVAAD
+DAYLLLPFTGIGLVPDGGSSVTIARAVGRALAAEMALTGRRLGAEEARAAGLFSRVVPGP
+DLAGVAHALADAVAERPRRAVALAKAALNAADAEVVGRALEREARDQVELIRSAEFAQRS
+AAFRR
+>KBS0714_MOLHKGIG_01788
+MTGTRVATERHDTALVLTLDGPDRLNAVTPTAMEALHTALGEAGRDPAIRAVILTGRGRA
+FCAGADLRDDLDPEATMRAANRVVETIRAVDVPVIAAVNGPAVGYGAALAAAADLAVAAD
+DAYLLLPFTGIGLVPDGGSSVTIARAVGRALAAEMALTGRRLGAEEARAAGLFSRVVPGP
+DLAGVAHALADAVAERPRRAVALAKAALNAADAEVVGRALEREARDQVELIRSAEFAQRS
+AAFRR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002209.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002209.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c11ddee8087a4a7f60a00d94aef07e9224e4a68a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002209.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_01264
+MQD----ARRALEAVGSVPDLAGTAVAVMGVSGSGKTVLALRLAAALGVPFAEADEFHSP
+EAVAKMAGGTPLTDADRLPWLHRIRDWTAVAAAERGAVVTCSALKRSYRDLLRDGPARVV
+FLHVDAPQSEIRDRMARRRHYMPPTLLHSQAATLEPLGVDEPGAVLANDSTVEDLTERAL
+RVLAAR
+>KD337_NAFOICDF_01173
+MTGQAGPAR-------ALLDLAGTAVVVMGVSGSGKTVLAQRLAQALGVPFAEGDEFHSA
+EAVARMAGGTPLTDEDRGPWLRRIRDWMGSGVAARGAVVTCSALKRSYRDVLREAPVRVV
+FLHVETPAEQVLHRMERRRHFMPPALLPGQLATLEPLEADEEGVVLANDSTMEELTERAL
+RALADL
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002214.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002214.fa
new file mode 100644
index 0000000000000000000000000000000000000000..95f083931fa15173367fca071f29ce4505d0ce13
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002214.fa
@@ -0,0 +1,12 @@
+>AS2_ACLBLIBL_01311
+MTVQKFPVFPAGTLEHVCKLIAELYTGNELTRIMSEIPLRDDLGEGNTKWRRLACAVSKN
+QAHTQSGNAVIALVSASMRPERTLDRADAARLTRDQLNQVLSLVGYRVRD--DGRVARA-
+------SRARSTDEAEKRTEHLRGLLERGGAHREVLTYCRPELLRKDYYEAVFEAIKGLG
+SRLRQLTGVDGDGYALVEDAMAGSTPRIRLNALQTRTQRDEQRGVANLTKGLFSAFRNPA
+AHEPRIEWTLSEQDALDVLGTLSMIHRRLDMA-----------TVEAL
+>AS2_ACLBLIBL_02210
+M--QRAGLTPVTIIKN-----------------------------------RGSANEERI
+EVQAQLQNSSLAMFAI----EDPLFEGDHVEMPDPRGGQMVKVVRKLVQHPMPANMARAF
+GGSNGYAEVTWGESAAVRQAPVR-RLELEGLHPEVVRVSSALFADEQFDSAVTEAMKSLE
+IRVRRLAASTLSGAPLMQEAFRPKEPKLDVAVEEGRSGEDEREGFFHLFRGAMVGIRNPK
+AHE--LAHGDNPFEALEALALASMLHRRLDIAAGRLECADDSVTVLDQ
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002216.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002216.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b4e917692ed8320e5ac7f885988639e68ffb2a06
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002216.fa
@@ -0,0 +1,38 @@
+>AS2_ACLBLIBL_01502
+MKNSTASGSGFQFDASQPYQLDAIASVVDLFDGQPKD--AEKLVTTLRSAAVLPESDQAA
+LDIDLTQEVGAVGNSLVLDRDLILANLQRVQDRNGLEVAPALAGDAL-----DFDIEMET
+GTGKTYVYLRTIFDLAVRYNFTKFVILVPSVAIREGVSTSIRLMREHFENLYKPQGVTFD
+ASIYSGKSAEEVQSFATSTNVQILIMTIDSIRGNA-NTRIIHQTRDKLNGLRPIDYLKAT
+HPVVIMDEPQNMESQLSQSAVGELDPVFTLRYSATHKKQRNVVYRLDPVDAHDLGLVKQI
+VVAEVAQQGADATP---YIKLVEVRREPSWSARLELSCRKADGSLERRIVSVKQHQELSD
+ARLTNNPIYEGWRINEMSIEPAYVDLTLHGFLYEGE--SIGASAGAIYREMIRETVREHL
+RKESMLRAKGIKVLSLFFVDKVASYLGDGTNNDDANGDFVQWFDEVFVEER---------
+AKNARYQELLPQAP-SKLRRAYFA-QIKGKKGAPNAFVDSDERRQGAREDDAYELIMQQK
+ERLLDENEPVRFIFSHSALREGWDNPNVFQICTLREMGAETERRQTLGRGLRLPV----A
+KTEDGYTRVADRGVATLTVVANESYTKFADALQREYKEAGVEIGRVRRAEFS----KIPL
+QDENGALTDDQFGYQRSVLVWEHLKDKGFIDKDGAVTSKFQPNQLGFDLGLP--------
+VDFAWAESIIIELVERANIGKYVKPVSKRQPRM-LNKQLYSNPEFEEFWETISQKTTYRV
+RVGRDQLIENAVRAIREAPQIDALRIQVTRAGVKVLRGGAKGEELGT-------------
+----RSADLKGSYDLPDIITELQEVTSLTRKTIVDILIG--SGRLGEFIGNPNDFIAMTK
+RALQSELAKIVVDGIQYERIAG----SVYELRELQRDGAEEKERFLDQMYKVQHTQKTDF
+DYVVFDSDVERQFAELLDSREDIKLFMKLPAKFKIDTPVGPYNPDWAI-IKQEDGEDR-I
+YMIRETKSTLDDSKLRPTELAKIKSAKRHFEAIG-----------IDDYARAVPGKWNL
+>KD337_NAFOICDF_00290
+MK--------LQFSTKQ-YQTDAVASVVDVFSGQPRDPGPQYQIDPGRRAST---GEDAA
+VAL-----TGYRNAEIALSLSALLEGIQRVQRAQNLPVSTRLATSAAAPGRPNLDVEMET
+GTGKTYVYIKTMMEMHRRYGWTKFIVVVPSVAIREGVKKTFDITAQHFQQEYGTRPQTF-
+--VYDSSRLHEIEAFSSNGGVQVMIINIQAFNSSSKDNRRIYDVLDDFQSRRPIDVISAN
+RPIVIIDEPQKIGAAKSLSSLANFNALMVLRYSATHEVDHDKVHRLDALDAFNQKLVKRI
+EVRGLTVRGLSGTTAYLHVSDIEVRQGKNPRARVETEMQSAAGTIRRKLAWVTKGTSLHD
+LS-GGLEAYQGLTVVDVDARRNVVELSNGDLIESGQLADHDVTEDTKRRIQIREVISAHF
+HREREMFRRGIKVLSLFFIDEVAKY--RDYDREDTLGDYARMFEEEYVEARDAVLGELET
+EDDAAYRDYLRRDEVSAVHEGYFSVDNKSRRMVDGKVAGRGDEKGQSTDTDAYDLILRDK
+ERLLSLKEPVRFVFSHSALREGWDNPNVFTMGMLKRSDNEVSRRQEIGRGLRLAVDQHGV
+RMDDPATV---HEINRLTVVTDESYTDFVTGLQTEIAKS--LKGRPRKASVAYLTGKTLT
+THEGEILTLNK---EMAELLHRHLIRNGYVDDDDLLTQQYLNEREAGTLAMPSNEKLLGV
+VDFCWP------LLDALHTGVDIVEPSRAMKRLPVNRHNLERQEFQRLWERINRKAVYRV
+QFDSEELVQKAVTALDEKLRVTGLTYTV--------ETGVQGEDLEAEHFRSGQGFTSSA
+ITTQKESATSGSRVRYDLLGEIAERTTLTRRTVSAILRGIRPDTFAAFPKNPEQFLTEAG
+KLINEQKAAMVIEHLAYSPLEDTYDISVFSENQTSQDFTLASEKL----------EKHVY
+DYVVTDSDVEKRFVTQLDASTEVAVYAKLPGGFTIPTPVGDYNPDWAIAFDEEDTHVRHV
+YFVAETKGTSSSFELRGMEDAKIRCARKFFDALNRKNAGDVRYDVVTDYNGLMDLVKGA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002217.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002217.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8cd822bf715c743abc3934f636e099f2a0cb9540
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002217.fa
@@ -0,0 +1,18 @@
+>AS2_ACLBLIBL_01644
+MSAPHPRPLLLRGARLTTVETADVLVAEGRIAALGAEAAAQAAGLDPAPEEVDCAGLVLL
+PGLVDLHTHLRQPGKEDAETVETGTRAAAMGGFTSVHAMANSTPTADTAGVVEQVWRLGR
+DAGWCDVHPVGAVTVGLAGEALADLGAMADSQARVRMFSDDGMCVHDAVLMRRALEYVKS
+FGGFVAQHAQEPKLTAGAQMNESELSGVLGLAGWPAVAEEAIIARDVLLAQHVDSQLHVC
+HVSTAGSVRLIRWAKEQGVRVTAEVTPHHLLLTEELVRSYDPVFKVNPPLRRESDVMALR
+EALADGTIDTVGTDHAPHTAETKQCEWTVAAMGMTGLETALSVVQHAMVDTGLMDWAGVA
+RVMSVTPASIAGLEDQGQADERGVPRVGAVANLVLVDPEARRTVDPEQHLTKSRNSPYRG
+MELPGAVRHTVYRGARVVADGAPAQPYRHPAVAEAGGRA
+>KD337_NAFOICDF_01541
+MSTTVPPALLFRGAALASGRVADVLVSDGRVAAVGEVPAVDAEG----ASVVEAAGTVLL
+PGLVDLHTHLRQPGKEDAETVETGTRAAARGGFTAVHAMANSTPTADTAGVVEQVWRLGR
+EAGWCDVHPVGAVTVGLAGEALADIGAMADSQARVRMFSDDGMCVHDAVLMRRALEYVKS
+FGGFVAQHAQEPRLTAGAQMNESELSGVLGLAGWPAVAEEAIIARDVLLAQHVDSRLHVC
+HVSTAGSVELIRWAKAQGVQVTAEVTPHHLLLTEELVRSYDPVFKVNPPLRRESDVHALR
+AALADGTIDTVGTDHAPHTAESKQCEWTVAAMGMTGLETALSVVQQAMVDTGLMDWSGVA
+RAMSTEPARIAGLQDQGQADESGEPLVGAVANLVLWDPAVRRAVDPETHATRSRNSPYRG
+MELPGAVVHTVYRGRRVVADGELTQPVVHADAPE--GRA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002224.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002224.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f54533c0481934222dbb1e0fe10bbb9fe6565ae5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002224.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_02013
+-----MTTPAPTSRSDWAEYNAAQAGRGRIRPLTARAVDAL-AADADLGARHAVELGCGA
+GVEARHLLALGLTVSTIDADPSIAPAMAALAAGGALDHRTGRIEDWDPLPAADLVLANAA
+LPFVPRHAFDAVWSRIRAALAPGGVLAVDLFGAEDDWSSNAGTYLTRPEVEDLVRGLEVV
+ELTERSERGPAFSGPKHWHVFTVIARARRRPSDRSPV
+>KD337_NAFOICDF_01290
+MGDTALMIATPTSSSDWNSYNAARAGTSAVRPLTERALTALRATHQNLSGLRAVELGSGA
+GIEARRLLQEGLTVHTIDVDASVEERMHELTSLGVLEHRTGLIEEWDPLPLADLILANAS
+LPFIPRAHFAPVWERLRQALLPGGILAVDLFGCEDTWASDQGTYLTLQEVERLLDALEVI
+ELNERNEEGRSFDGIKHWHTFTVIAR--------RTA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002225.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002225.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9de4a16338780f4a05071ec3be921b14af42f5f6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002225.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02103
+MVAHATFFTEQKPAAAFKLKVLEDYLTAWSMKVASRPPHEVAYIDGYAGAGQYDDAHKGS
+PLYALDIARKLAPQNRSMHIHLVERDRAHAETLRRAVAAQGRSASPIHLHHGAVEAQIDA
+ILHQIAARPALFFLDPFGTALPYDVVASKLLLRPARSTEVLLNFSLSTVWRIGGIVRKGA
+TASPAEQLTLLRGDHFLGGPWWQEVFAHARAKADASGEDSPAATAASYVAREYMQRMTGD
+TNHRVISVPIRRTPSEGPIFILMLFYQHHAAPMLFADAAARAHKRWRQVNAGNYYRGLLD
+DAQGSLFDLEETFNQQVVAEQTEVRNRAIAFIEATLSAQLVQGQAVRICDDVPRWLGAHL
+GTAGAPEVRQAVKNLKKAGIAQAYTKEMVDGRALILPSRPAG
+>KBS0714_MOLHKGIG_00949
+MSANTNFFTSQQPAAVFKLKVLEDYLTPWAMKVASKAPREVAYVDGYAGAGQYDDAHKGS
+PLYAVDIARKLAAQNRIMHIHLVERDRAHAETLRHAVAAQGQGAGPVYLHHGAVEEQIDA
+ILNDIGTRPALFFLDPFGTALPYDVVASKLLLRPARSTEVLLNFSLSTVWRIGGIVRKGA
+SASSGETVTLLRGDRFLGGPWWREVFAEARRQADVSGDSSSAATAASYVAREYMQRMTGE
+TAHNVISVPIRRTPSEGPIFTLMLFYQHFAAPMLFADAAARAHRKWRQVNSENYYQGLLN
+DTQGSLFDLQETFDQQVVAEQTDVRNRAIAAIQTRLSSHLGQGQAVRICDDVPHWLGEHL
+GTAGASEVRQAIKNLQKAGIAQGYTKDMVDGRAVILPARRGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002227.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002227.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a1c5625f5b904754d7a964aa16559f701736c60a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002227.fa
@@ -0,0 +1,12 @@
+>AS2_ACLBLIBL_02122
+MRAAAGGGPGPDRAALDRLAWRLPVRRVTEHPRSPADRGTWPATVPAVRQLLDEGLDLSA
+ATVVVGANGAGKSTLVEAVAEAFGLNAEGGTRNVVHETRRTSSDLAEHLQLARGAQATRD
+GVFLRAETMYGLFTYYESVFRGADHHRRSHGEAFLQFCAERAGLTGLWVLDEPESALSFD
+GCLALIAHLRDILADGSQVILSTHSPVLAALPGARILLLDERGITPTEYDDLPFVYHHRS
+FLDSPQRYLRHLYDA
+>KD337_NAFOICDF_02013
+M---------PEVGIDATPTW--PVRQVSEHPRAPMPRESWPATVPAIAQVLDAGLDLGP
+ATVLVGANGAGKSTLVEGIAEAFGLNAEGGTRNVRHETRRTTSPLAGHLLLTRSAGAPRG
+GVFLRAETMYGLFTHLEQNLIGDVLHERSHGEAFLDYLQERAGVRGLWVLDEPESALSFD
+GCMALLVLLADVLEGGSQVILSTHSPLLAALPGAQMLEVGPWGLRDTAWEDVEAVQHWRR
+FLDSPERYLRHL--R
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002228.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002228.fa
new file mode 100644
index 0000000000000000000000000000000000000000..768b174fd39e17de2a64e67d9ec6809e97578681
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002228.fa
@@ -0,0 +1,24 @@
+>AS2_ACLBLIBL_02200
+MSVRESRPTQADETALKAFTGAEDEVTNFDGVVSYEEEPPAGFLAEPRSGLSPTARPDTE
+EHAEAVLAGLSSLSATDSEILQLATTHFVERMWDGTPGTTRHLLDLCAAVARRLGDRKHD
+GAPRFYAPRALPVSAVAAMLAHLHRYCVVDLGLPASDGVAPLLVRYADDGPLEGTYSRVT
+EASLYVDALALEPESSPKQMEELFARL-AARSQVVHRCSDPNLVPVANGIFDYRTKTLRE
+FDP--ELVFLFKAATRYVDAPPMPMIVQPDGTDWNPVDWMASLAPDPEVRHLLWEVTGAL
+LRPLNAWDKWLALISPEGRNGKGT-------LLAMWRALLGPDAHKSATLASFGADFPDI
+EGLNEKSAILTDENDVGRYLESSATLKSIVTGDVLSAPVKHSKAVPVAFQ--GLMVQCMN
+DLPRAKDKSSSFYRRLLAVPMEANFTEATENKAIKHDYVQRPE-VLEWVLHHVLVEMEAF
+TSFSEPAACAALKDDVRDANDPVRVFVAEFIDQFAWDLVPTTFAHDLYKAWLVRRWPNTH
+PVNEAEFIRQVSGHMAEYGWEHKKNVRVSSRMHSHEPLINEYDLRAWMNPAYNGPDPVKR
+AAPLLKPSYR---GWVRIEP
+>SA211_MHAAABBN_02228
+M----TSPLDIEDVDLSETTRQRPDYFHPD---LYAEQPPAERPGEKHRGQLRIAHRLAE
+AHSGRL----------------MYVNGLGWHVWDG----QRWAPDETAAAERAVHD----
+--------------VLRSALAESH------------DG----------------------
+DRNLREDVRRCETAAGIRGVLDIAATLEGVRVAVDALDADPHLLNVANGTLDLRTRTLRP
+HDPADRLTRVCRGAWTAGESDGM----------WS--DFLARVLPDDAERAYFQRVIGQA
+VFGA-VREHLFPVLTGTGANGKGTAYTAIAHALGDYAAIIDPDLLMTSARGPGG---PEM
+MQLFGARLVIGSETEEGKPLD-AALMKRLTGGDPITA--RHLYQAPVTWEPSHQFLYVTN
+HLPKVKGNDPAVWRRVRVLPFDVVIPPADRDPALPERLREAADAVVTWAVRGWWDYLDA-
+GGMGEPEAVKAATDAYAVQSDAVRRFIADACVIAPGASARTRELHTAWTAWAAA--DGAE
+PLAEKKF----GAELDRLGY----------------------------------PTTRTR
+AG-----SVRQGIGLLADDD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002230.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002230.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f7c4064cc0e928df74b12f61a39a427fffbf3c46
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002230.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_02202
+MTASTTKSGRARRQRTIFSKRLELRLTERQFRLASETAKRLSEIRDKKVTVSDYLRMLIE
+DGGKGLIQGLERVSHAPAGILSQADVDRIVAALQEVRDEVRRVGHNVNQMTKVAHQSGQV
+ADDLDGVKQALAGIDAHVLDAAKSFLGYEATDEEEG
+>KBS0714_MOLHKGIG_01494
+MTASTTKSERARRQRTVYSKRLELRLTERQLQLASETAQRLSAIRGKRVTVSDYVRLLID
+DGGRGLVQRLERISQSPAGTLTQADADRVVAALQEVRDEVRRVGHNVNQMTVRAHQAKQV
+VDDLDEVKASLSQIDAHVLDAAKTFLGYEGTDEDEG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002233.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002233.fa
new file mode 100644
index 0000000000000000000000000000000000000000..83506bf4ac7628f3e056d306c19c9b23b7c7374a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002233.fa
@@ -0,0 +1,6 @@
+>AS2_ACLBLIBL_02209
+MSASTATATFPGVTLFLPDGVMVGDLIYDARTSQLAIVYSDGETEVLSIDLTLEGYLPTP
+GEALIKDWSEHSGVTSALVDAGLVMRTETLVVGPFSSRAYRVLVLTPEVTGR
+>KBS0714_MOLHKGIG_01497
+MSAPATAVTFPGVTLFLPDGVMTGDLTYDARTSQLAITYADGETEVLSIDLTLEGYVAAP
+GEALIKDWSEHSGFTAALVDAGIVMRVETLQIGPFDSRAYRVLVLTEAVTGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002235.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002235.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4fbfea9e22d57628aa653524ae2e6b935c89288c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002235.fa
@@ -0,0 +1,16 @@
+>AS2_ACLBLIBL_02277
+MADAVQ----------VC------------------------------------------
+------------------------------------------------------------
+AFNST-------------------------YTASQGPAVPCSSSAR---------EREDA
+LLDALD--VDP----PGSWWSRAAELARPRTVVAGDPPREDWLAVPLRRDGPLATTGDLG
+RAAAVGLVIREDGPLWDEDLVRTLTPPPICPKVLEVRTPADWLRLVEAWPEAASKATAEI
+LARHTGLDGRWLVPRWTAVAEQWDAVHLSIGAWARSAGVVQPVGEGSAWTMCAGWDPDAT
+FWLTAQPTVASEQVLPTLTPAEALDGLA------------------------G
+>KD337_NAFOICDF_01291
+MKASVQDLLPGPRGRRLCLEAARMLSHRVADLVFWLGYELDPDRGISSLVMWPPGGGALE
+AGARPAVSIDQVAQALADLDLSGLTDGVVQAALVGSVMSARYWQEPDGEDVLAGHPDIHA
+ALEAVAAGVLGSAAARHWGSPRAAAQWVIDWRAFEDPA-PVPRDARRVLAAWAREERRQE
+VRAAAEHPVDPTANFSGTWWS----IPQGAVVSVGQIP-----------TGLDLVEDDIG
+AEAATVIPVRGAG------------------RTYEVRGPGDWIRLCRRFPLEVSASRRHD
+WYRVTGRSGRWVIPDWEQVASEWDAVHLTTLGYLSAATRALPVEAGVA-TVLAGWDPDTT
+VWL-ADAVRESEEPRQCWQRVSGDDGWARCVPVRDVGSEGPARGRGASPPVEG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002236.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002236.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fdad4e544566bffab9fd548d54c232dde9f9a1e7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002236.fa
@@ -0,0 +1,6 @@
+>AS2_ACLBLIBL_02324
+MTAFGIIWLIAVTLVSAVAVRGILRQSTGVHAADRNGSTSFLWFLVALAFLLTNLPSGID
+PFRAVGLHLGAAALLGFLLHVLTRGAPAARD
+>KD337_NAFOICDF_02187
+MTVIGIIWLSELTLVSGVAVRGL---------------------------LLTHLPSGID
+PFRAVGLHLGAAALSGFILHVLTRGSASRAA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002238.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002238.fa
new file mode 100644
index 0000000000000000000000000000000000000000..913c49347f1f3403d625f50ba6aa363497cc11b3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002238.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_02345
+MRILGGFCYVAFITDVFTRRIVGWAVSASLHTQGLPLLALEHALLSTGASRGREGLVHHS
+DRGAQYVSLAYSDALIAAGVSASVGTVGDSYDNALAETVNGLYKAELIHSKRVWESVEEV
+ELATMGWVHWWNTARLHEALGYCTPAEVEATYTHDQDSAPVAS
+>KD337_NAFOICDF_00308
+---------------MYSRRIVGWAVSGSLHTAGLPLLALEHALVSTGASRGRQGLVHHS
+DRGSQYVSLAYSDALITAGVTASVGTVGDSYDNALAESVNGLYKAELIHSKRIWESVQAV
+ELATMGWVHWWNTQRLHEALGYRPPAEVEAAYTHDQDPAPVAS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002239.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002239.fa
new file mode 100644
index 0000000000000000000000000000000000000000..03b406c2b90156e453a241fbcedd3fd1172ee2c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002239.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_02361
+MDENPSTAWTGTCGFRMLPTDDFAQGPSTARLTEVAGGAALALDYTWVHPEQGEQAGHLV
+LGRPDDGGRVTVAFTDSFHQSPEVRVLEGTAARTEGGGDAGRDRGAGAAPHPIDGDGVAV
+TMEYSGWGWTVAVRRQGGRLAMMMQNVVPAGVEGAEPGPYDVMRAAWTPAGA
+>KD337_NAFOICDF_02252
+MSLPSATDWTGTCGFRLYPTDEFSSGPSAARLTPVAGGAALALDYTWVHPDQGEQAGHLV
+IGRPDDAGRVTAALTDSFHQAPEIRVLEGASSSPEGDA------------HPVEGEGVAV
+SMEYSGWGWTVAVRLQGGTLAMVMQNVIPEGVEGAEPGAYDVMRAAWTRTDA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002240.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002240.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e10749e3a16456928c62ea4a25d2fb349cd818f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002240.fa
@@ -0,0 +1,6 @@
+>AS2_ACLBLIBL_02362
+MTKKHLGFLNFGHWIHRDPVGGRPAEPDATAALDDVVQMAVDAEAAGLDGAWIRIHHFQR
+MFSSPFPILTAMAARTQRIHLGTGVIDLR
+>SA211_MHAAABBN_00304
+MTRKHLGFLNFGHWIHRP-----GAEPDARQALDDVVAMAVAAEDAGLDGAWLRVHHFQR
+MFSSPFPILAAMAARTERISLGTGVIDLR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002242.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002242.fa
new file mode 100644
index 0000000000000000000000000000000000000000..60cfd64a1a2e23a7e3dd71860f846abc9840ebd0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002242.fa
@@ -0,0 +1,10 @@
+>AS2_ACLBLIBL_02368
+MSADQHPLFQGIEGGGAPSQAGLEDTSVSDVSDRPTACHSGVQVEQQADSQVKTGRADAE
+AVRQSHGGAKRRRGGGGRLDTRFDEATLGALRTRAERLGLAPSTWVRSVVRDALHASRSE
+ELDAAVAAHLLGVEARVQASADARELAAQVRPLAINVNDLDRRARAGEAVALSAEVPELI
+ELLREVRTLLGDRTAS
+>SA211_MHAAABBN_00300
+MSTERDALFQGVEGAGGPSQAAGEDMSASETSDTATACHSGVQVEQQTDSQVNTGRADAE
+AVRQSHGGAKRRRGGGGRLDTRFDDATLAALRTRAKRLGLAPSTWVRTVVRDALHASRSE
+ELDAAVAAQLLGVEERVQASADARELAAQVRPLAINVNDLDRRARAGEPVALSAEVPELI
+ELLHEVRALLGDRAAS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002243.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002243.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f394de97c9b49ac4536c4bb12e1fe5949cb52542
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002243.fa
@@ -0,0 +1,18 @@
+>AS2_ACLBLIBL_02369
+MSRAVVAVAKQENNPTSIGLTQYLDPSYWTWAAEDANGAALLQQGAGPILTYIVQRLEAV
+GCEVVEAYGIVHDKDEREVWSDTEKALVVEPKPDHLHAVIKFASRSKSAPLDRLAFGIGV
+EPQYVEKPGRGRYAFDNMLSYLTHVKYADKHQYAPSEVATVRGPDYLGIDALRRETWLKG
+RAHVKKRVVAENFEDMRERVLQGEITRDQIMLTDGLFDIYSRHQREIDDALSAYGQRRAY
+RAAAKLRAGDFSTHVVFVHGDAGIGKTRFATDFIMAAIDAANANGERWQVYRAATGNPLD
+DWRGEEVLLLDDLRASAMDANDWLLLLDPYNASPAKARYKNKGEVAPRLIVITATIEPVE
+FFFYARQKGNVDEALDQFIRRLASVVKVFRADDINRYLVQHIGKIEPYEWHQCSLPAAAH
+TPGVNGNSYHQQVAPSRELTYGPETSAEHDAESAVVELLSGLAVRSPDVPLALIGGAA
+>SA211_MHAAABBN_00301
+-------MAKQENNPTSIGLTQYLDPSYWAWAAEDPNGAALLQQGAEAILAYVVQRLEAT
+GCQVVEAYGIVHDKDEREVWSDTEKALVVEPKPEHLHAVIKFASRAKSAPLDRLAFGIGV
+EPQYVEKPGRGRYAFDNMLSYLTHVKYADKHQYAPSEVATVRGPDYLGIDAQRRETWLKG
+RAHVKKKIVAENFEDMRERVLQGEITRDQIMLTDELFDIYSRHQREIDDALSAYGQRRAY
+RAAAKLRAGEFSTHVVFVHGDAGIGKTRFATDFITEAINAANAHGERWQVYRAATGNPLD
+DWRGEEVLLLDDLRASAMDANDWLLLLDPYNASPAKARYKNKGEVAPRLIVITATIEPVE
+FFYYARQKGNVDEALDQFIRRLASVVKVYRADDINRYLVQHIGKIEPYEWHQCSVPTAAH
+TPGMYGNAYHQNVG-SRELTYGPETSAEHDAEGAVAELLGGLAVRSPDVPLALIGGAA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002245.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002245.fa
new file mode 100644
index 0000000000000000000000000000000000000000..279585ad3b983c75a42cacbdfec25077e80d477e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002245.fa
@@ -0,0 +1,30 @@
+>AS2_ACLBLIBL_02386
+MYAFKDQLAAELDELRESGLYKRERAITTPQSAHVKATAAGAEDGEAREVLNFCANNYLG
+LADDSRLIDSAKRALDERGFGMASVRFICGTQDRHLELERRVSRFLGTDDTILFSSCFDA
+NAAVFEPFFGREDAIISDALNHASIIDGVRLSKAHR---------FRYANRDMADLRAQL
+EATKELNDGAGARRTVIVTDGVFSMDGYLAPLAEICDLADEYGALVMVDDSHAVGFMGDT
+GAGTPEHAGVSDRVDVYTGTFGKALGGASG----GYVAARQEIVDVLRQRGRPYLFSNSI
+APSIVEATITALDLVE--DSASLRAQLFENAALFRRRMTEEGFELLEGEHAIIPVMLHDA
+ALAARMADAMLDQGVYVTAFSYPVVPKGQARIRVQLSAAHSAEDVEAAVAAF--VAAR--
+---------------EAVQG----------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------
+>SA211_MHAAABBN_02172
+M-STAEAGAATSTPADPWSSWLGSRAAVRARRGLERRAEPPEPGAPSSDVVDLAANDYLG
+LAAHPDVRAAAARVATEGPVGARASRVVTGTHPAHADLESAAAALAGADAALAFSSGYTA
+NLGVLGALAGPGTAFLLDEHAHASLRDGTALAATARSGAFAPLPGASVTTVEHNSVPAFR
+AALGRLRAEGRARRIVLVVESLYSVLGDEADLPALAALAAEHGALLVVDEAHSLGVVPGG
+SRTGALGLWAGQAPVVVTATCSKALGGQGGLALFGGPAARSWRDHVLNT-ARTFVFDTAL
+APVLAASAAAACRIAATGEPAARLARARETAVDVFTRRTELAGHVEVGAGAVHSIRMPGP
+EQAVAAAAELRAHGVLVGCFRPPSVPDGIARLRVSVTTAVPEPRLRAALEAVASVAARAW
+GASTGCPFAHGDPRPEAVRGDHLRISDPADLRRVLTDPGTFASDNALTAVVPLSGPARRI
+LAAARFRLPPVLASAGGEEHRAVRRVVAPFFSPAKVREARGRILATTRTALTAALADTGR
+AGGAVDLATTVAAAVPARVMSALTGVPNPPEAQLHRWSADSLELFWGWPDEDRQLRLARS
+AADFHRWLRGAVVEARGDDAQPGNLFAALHEAGVDDERIVSLGYFLVIAGQETTRLLIST
+ALTRALADPARWAALGAGADGGAGADAAEAAAAELVAECLRTSSSVPTWRRLATADVRVG
+EHEVRAGDELLLHLSGEQHDDARLAFGFGLHRCLGAGLAELETALVVREVARLLPDARLT
+GPPATWLRLLSFQAPQHVLVTPGPWHGGEDIRIEQSGVDTCASRS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002246.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002246.fa
new file mode 100644
index 0000000000000000000000000000000000000000..89c039dcee5749ae7d284ec756ff5cc6faaa9c82
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002246.fa
@@ -0,0 +1,12 @@
+>AS2_ACLBLIBL_02433
+MARC-------DLAAARGRALSLVRTQQPFVIWGAEPMNGGNYLYLWATAWARQRHTGEQ
+WLVRHKPKMDPWLEEFPLLRALTVDEADVGWRQRRTVEWGQQAGQDFRFKDLRDFARELL
+LASESFRSRMAARPGDAMVVNVRRGDYYADAGLRAVFGFDIPGYVHAALRRIPAERQERV
+VVVSDDPDWCAANLGFLGRERSVVFMPTPHDMFEDLAQLAVARDLILANSTFSYWGGYLA
+SARSAQERPRTVFAPLHFNRLYSDGESPLLLPEWTAIPDDEFSTPDRIQGEA
+>SA211_MHAAABBN_00241
+MRSLMRMRTPRDIAAG---VLATVRRADPPVIWGAEPMNGGNFLYLWATAWARRRETGRP
+WLVRYKPKMEPWLTEFPALRDLTVREEDVSFRQERTVEWGQQTYQDWFFRDLLDFARERL
+LTSSGFQVRLKQVDRGAVVVNVRRGDYYSDPVHRANFGFDVAGYVRAAVARVPRDEAGRI
+ILVSDDVDWCRENLGFLSAWGEVGTIPGEHDMFNDLAQLAGGRHLVLANSTFSYWGGYLA
+SAMPVNDRPQSVQAPLHFNRLYARGESPLLLPQWQAIPDDAF---------I
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002248.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002248.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a5c07f8f39b4d760b00b8ac71bf7cbb73f09ecd4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002248.fa
@@ -0,0 +1,8 @@
+>AS2_ACLBLIBL_02554
+MFGG-GMMRDLMVGSGWLGLLACMVLGGIARLPLAAAGTRRAEGRPWAVQGVLGFGLLGL
+ALLAALPA----------------------------------------------------
+-------------DP------SPAWYPREDGDERRG
+>KD337_NAFOICDF_02424
+MFGGDSMMQDLMVGSGWLGLLGCMILGVLASVVLGTAGRRRVQGRPWAVPGVVGGLLLAA
+AVASALSSFGTFFGFMGIAFAVFMGIGAWNAFTTPARAAERLREQEAHAERLGAAYARGA
+ATGPPAPHSPDAAEPGQAPAHDPDWYPATPGGGPR-
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002252.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002252.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b5f5ed52e5f6574187b3b6d03e8544c4f2bfa9a2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002252.fa
@@ -0,0 +1,6 @@
+>AS2_ACLBLIBL_02670
+MCRAVTCKTCGKTTWAGCGQHIAEVKRTVPAGQWCPGHDKEKEKAAATS------GFFAR
+LFGR
+>KD337_NAFOICDF_00542
+MCRPATCDVCGKTTWAGCGQHVDSVKASVPAGQWCDGRHTPAEQAAARKDAPARGGLLAT
+LFGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002258.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002258.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2d43f65459b88ec78b5130774f81ddbf3339c28f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002258.fa
@@ -0,0 +1,18 @@
+>KBS0714_MOLHKGIG_00402
+MTRREVESVEDRIREHLRRDDLNSAVELLRALSPGDALELLDRSEPRMVPVLFRLLDKST
+AVRVFAAMETGQQSDLVRQLQDGQVQDLFAELRVSGQARLLDEMPATVARKMLAGLDAGA
+RGEVGRLLGYPADSVGRRLRMAPVRLREDWTVAVALENLRDHGGREQAAIVSVPVVSPQA
+RLTGVVDVSVLVTQPLDARVSEIMREPVSAVATEDAEEVARLCADRRLWTVPVTDSEGRL
+IGVFTVADALEVLDEESTEDAARAGGVEPLGRPYLATSVLALMRSRITWLLVLAIGATLT
+VQVLGVFEDTLEEMVVLSLFIPLIIGTGGNTGNQAATTVTRALALDDVRPRDAPRVMFRE
+LRVGMALGGCIGLLGLVIAGLVFSWPVGLVIGATLFTVCAFAATVGGLMPLAARTIGADP
+AVFSNPFISTLVDALGLVVYFFIAQAVLGI
+>TT9_LFPAFLNI_00408
+MTRREVESVEDRIREHLRRDDLDSAVELLRALSPGDALDLLDRSEPRMAPMLFRLLDKTT
+AVQVFAAMETGQQSDLVRKLQDGQVQDLFAELRVSGQARLLDEMPANVARKMLAGLDAEA
+SGKAGRLLGYPADSVGRRLRMAPVRLREDWTVSTALENLREHGGQEQAAIVSVPVVSPQA
+RLTGVVDVSVLVTQPLDARVSEIMREPVSAVATEDAEEVARLCADRRLWTVPVTDSEGRL
+IGVFTVADALEVLDEGSTEDSARAGGVEPLGRPYLATSVLSLMRSRITWLLVLAIGATLT
+VQVLGVFEDTLEEMVVLSLFIPLIIGTGGNTGNQAATTVTRALALDDVRPRDAPRVMFRE
+LRVGMALGGCIGLLGLVLAGLVFSWPVGLVIGATLFTVCAFAATVGGLMPLAARTIGADP
+AVFSNPFISTLVDALGLVVYFFIAQAVLGI
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002259.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002259.fa
new file mode 100644
index 0000000000000000000000000000000000000000..84d19cca486ba7b575180cde55215444ad777f4e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002259.fa
@@ -0,0 +1,12 @@
+>KBS0714_MOLHKGIG_00488
+----------------------MVNETRAISRRQVTKGVTWSVPAIAATAAAPAFAVSSV
+GVVAGATLYANPLMTKYVQAQNGTTALYLNATPGVGIPDATACQSVQNKKISIVYTAPAG
+IVDFRKVLNARKAGTPYNTYTNGSVGDSKTFYTLKVGDRFVTGTNPAYWEVTKLASDGSS
+ITLTYSAPITGCYYYAQPSFNPYFWAKDVASMVNQVHLTAYIGTQRVAFDTGAASNVTWS
+ADRLEIIGPKTTN
+>SA211_MHAAABBN_00208
+MSECLMPVEVPQVLRSATKGIGMVNETRVISRRQVTKGVSWSVPAIAATAAAPAFAVSNP
+GVVAGATLYANPLMTKYVQPQNGTTALYLNATPGVGIPDATACQSVQNKKISIVYTAPAG
+IVDFRKVLNAQKAGTPYNTYTNGSVGDS-NFFTLKVGDRFVTGTNPAYWEVTKLASDGSS
+ITLTYSAPITGCYYYAQPSFNPYFWAKDVASMVNQVHLTAYIGTQRVAFEKGAGTNVTWS
+DDRLEIIGPKTTN
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002263.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002263.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fc72250619401d9005d617e4ad0e0851a0eb1c0f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002263.fa
@@ -0,0 +1,20 @@
+>KBS0714_MOLHKGIG_00596
+MATMIQ------ESMDSEYDDVRFPQERTQGLILGLTLEQVIVV-LAGVLIGMAFILRGG
+PAMFVGIGLMAVIGAFGATRFRGRSLPGWVWVAAQYLRRGATDQLEYRQGMAPAHVLELV
+DGEPQAPVSEAGPQAQRDAKGRIKPGEPARFRLPGVAGELMVYAMP-NGAGFVWDPRARE
+AVVCAKVMTTRGFDLESFDAQEERSLSWGSSLAALSRLPGVVRIQASDQTTLISGAAVED
+FYESKQEGAGRTGASIDPFLDQAFRELMKEA-QSMPVHEQWLTLVVSPSKITSQVKALGG
+GTPALMEHMLKLMTTVESTLPRSGTQVTAWHSPRTLAGLSRSAFDPDASVMVSTMKADGK
+TAGTAPSSAGPMAVEVHAGHMVTDGNYHRTYKVSELPQNLARLGFLDELVFAGDFRHTVS
+VFLAPVERGAAVRSVQRRKTDWHTNSRLMNKLGRIGSLEHDQSLEDVEREEAELRRRHTG
+VEVVVLVTVTGASRSELESAAAEVVASGITAECELRPVWMEQDAAFVAGALPFGRMKL
+>KD337_NAFOICDF_01792
+MSSRKKNNSHEPEATGSELVPVKFSRLTRRGILLGLSAAQLVTVGIAIATIITALYAGGG
+MWLAYTAPVWATAVLLTWVPVAGRPVIEWVPVAGWWVYRTTIGQLLYRRRI---------
+----------------------VTPRPAGTLALPGDQARLREYEDPTTGAGMIHDPHQNT
+LTVVCEI-THPAFVLLDPAEQERRVTAWGRVLATVCRSGRIATLQILERTLPDSGTGLAE
+WWTTHGQPDDTSWAA------TTYAELINRAGPAGERHATTLSLSLDMRNAARQIRTAGG
+GIRGAAAVLRQEMNTLTAALRSADLTPSGWLTPGQIAVILRSAYDP---AIAATLERHGE
+I-GHDLATAGPVAVNETWSRIRTDSAHHAVLWISEWPRSMVYPGFLSPILLSSGIQRSFS
+LICTPMRSDQAARDIRKKKVEHISDQAQRAKIGQIEDASQTAEYHDVLQQEADLTAGHGI
+LRYTGLITVTATTIEDLDAHVAALEQAAIQANCETRLLAGQQAKAFTAAALPLCR-QV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002264.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002264.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dcfc84a2a74fc554a92f125c2e6b18064096a8ef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002264.fa
@@ -0,0 +1,20 @@
+>KBS0714_MOLHKGIG_00597
+MREEPKVDLFQIIEPGKMSLREARVAQRKMKMAQAQAQRLRNREAREERFPQPQWGKAGP
+RGARQLRGLRTLAPRPVRTTTHTAATAYPFVAGPGLGARGLMIGKDMHGGGAFCFDPWAL
+YEAGIISGMSMMLFGQVGTGKSSLAKSLAVRQVLAGRKLSVASDKKGEWTRVVKGLGGSV
+IQVGPGLDTRLNPLDPGTRPSTDVQGEPMTDRAWASMVRTRRMSILVALVKILTDREMTS
+PEHHVLSAGLDAAVAVADAEGRPPIIPDVIRALDAARTDPDAMKAEAASVTMMTLGRVSS
+GDLAGMFDGETTVVLDEQACATSIDTSALLGASPEAVRVVNACAGAWTEAMVTTRDGGQR
+IVIYEEGWDNISSEADLRRMVEQWKLSRAYGIFNVLVLHKIADLDMAGDQSSKMAAMARS
+LLADADVKVIYRQDRSALKITTSEMELSDRERSLVRSLPKGTGLWRLGDSSFEVQNVLTR
+AELPLFDTDERMDKAKEAVA
+>KD337_NAFOICDF_01798
+M-----------------------------------------------------------
+-------------------------------AEGGLGSDGVFVGQDLYSGGSFVYDPWVL
+YARGIITAPNLVLAGIVGSGKSSLAKSLYTRSLPFGRRVYVPGDPKGEHTAVAEAVGGKA
+IVLGHGLHTRLNPLDEGHRPGG------LTDQEWASTVASRRRDLIGALAETVLARGLTP
+LEHTAIDLALTATV----AENEVPILPMVVDHILTPSHDPGGRLAEDGRLVGHALRRLVA
+GDLAGLFDGPSTVAFDPDLPMISLDLSRVTENS-TLISVLMTCSSAWMESALLDPNGGQR
+WVIYDEAWRLMSHPALLKRMDAHWRLARHYGIANMLIFHKLSDLDNVGDEGSAMRSLANS
+LLANAETRIVYRQESDQLGPTATALGLTGTEQTLLPNLGVGQGLWRIKNRSFVIQHQLHP
+GELELFDTSSRL---TAGVK
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002266.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002266.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f4111594537763769cc925580e76384d5bb7e021
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002266.fa
@@ -0,0 +1,8 @@
+>KBS0714_MOLHKGIG_00599
+MGRFGLHRTGSAEYKRYLRSQAWGYRRVRWFADCRQAGQEPACQVCGITLTRAGTLDLHH
+VSYKGVGQDEEGRWQAREAHNDLMPLCRDHHQRLHQIMDGKKEFFGWDRRRATIVIVARM
+VRQSQA
+>KD337_NAFOICDF_02242
+MGRFGLYRTGSAEYKRYLRSQAWGYRRVRWFADCRQAGQEPACQVCGVTLTEAGTLDLHH
+VSYKGVGQDEEGRWQAREAHNDLMPLCRDHHQRLHQIMDGKKEFFGWDRRRATIVIVVRM
+IRQSQA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002267.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002267.fa
new file mode 100644
index 0000000000000000000000000000000000000000..b6621f2184df9e9e47d1801bd9d91df4fe4e0295
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002267.fa
@@ -0,0 +1,26 @@
+>KBS0714_MOLHKGIG_00601
+M-----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------IPV------------------------------------------------
+------------------------------------------------KDLIKAR-EDWD
+FEREVALDEQSSVERELASANGHLSRLKEALIERGLASLLWGAQHEDVASVPDLVQDTSE
+AVLAAQMYLADWLVLPD--SAVRHLEDIDTAPEAYNWGNKAWRGFRALAAYAQDRASGWD
+KGGFWEWCASGPVLGWPATSKKLSMTESEGVQTSGKFKGTRDFKVDPAVDSSGEITMLAH
+LKISEGGGNLAPRVYFYDDTNGATKKVHIGLVGPHYLVPNKSTN--
+>TT9_LFPAFLNI_00187
+MAVGYRAIFAVSPREDALAIARESVHSWLVDKLNRARPEVRQQALELDFNAPFAVQLSDE
+IHVSNTRAHGDNGQLQQLIRLDESSAPGETWRVNITADRNDVGGVRQQTIMVELDPLHLD
+AETAVMRAAPPRFVREMLTQHVLRSGTTVLTATPKALRGSEGGREAYRAVIDPLRQAQAV
+IAAQPPGSDMTIWQAAVASLTRQAMGITTALTLDKDALDQFNRRLPRNLQLQPGEVRTFA
+PHVDLDDPADSLRHRSLGPGTFARHIKPRVKDGVTVPEVDPTFASVHARRARMYALEQPL
+PDSIRSMRQQVRTGELREERDRAAGLVTGFSTVRVRPAAPAPAASPHRPGAGKRPSPTPT
+SGRLGASGAIPVPRPLPPSQEKVAEASSATPVAPAEAPQASAPSSITPVPAWQKTLVQLV
+WSTLGTEEITKEAIELLAEQLAASGRREQVADEQIANAVREAEIAAAQHDDLRARLEDAE
+LAAAAEQEERESLARE-------VEHLRRKAIEAERYEDLVVPEATDEEAKPSTFDDLIE
+RIQSERFTTHEYVVFTGDMKKVNEVEAIDIVGRHL---SSCWEFVLTLEGYARAKKDGFN
+-GGVHQYLTSGEVDGKRCSPGKHASLESESVKSNAAQRRERLLPVPKNVDRSGAVHMWAH
+FKCSKDGTK-SPRMHYYDDTDN-TGKIYIGYIGPH--LTNRQTSSM
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002268.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002268.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d6207dff189e993b3fe342124487281bdb9b773d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002268.fa
@@ -0,0 +1,6 @@
+>KBS0714_MOLHKGIG_00835
+MVSMSRPPEPRPAPAPTARAAAARPATPPGVQGRWARRAAGGLIGVSVLLAAWSFALPFV
+FGLGPRQVPWWREVFGL-------------IRIQGVVGV---------------------
+>SA211_MHAAABBN_00567
+---MSRPPEPRPAPAPTARAAAARPATPPGVQGRWARRAAGGLIGVSVLLAAWSFALPFV
+FGLGPRQVPWWREVFDVNHEANLTAWWSSGLLLLGAAGFTTVGLVRRALGRTGGGACSRG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002272.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002272.fa
new file mode 100644
index 0000000000000000000000000000000000000000..077adfccf9ed8c4a061b8463f04bdaedda2b61e0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002272.fa
@@ -0,0 +1,26 @@
+>KBS0714_MOLHKGIG_00892
+MSTVLLLTTGTGPAEGLLLQDLRDSGHVVDVLDVASHAWLRRRPGLAPAPLYPWTGTHAL
+RAAGAQIAREMRRVTAAGAYDAILASGLGAAGFAARHVEEEFIPLLRRGDLDFSAARRHA
+EEDFAALTRAVDRLFLADEWEFDKALSKGSRSAHLRHPRVGLAPQTLAPLAAEAETPRVV
+VLHPEHVDADRLAAQMEALQTAVDTVPGASLRSLSASALYRTRDLAAGRAFDAVAATRLG
+GATHVVLVGSSRDHAAVGELLVGTGFAERLVVEDTIGSGAWAAGHPGVRTGRGLRLVTEL
+AAALHGGPETHSAVDTVDGGTTDLLSAYRAAMTGRVDRTFEDLAVLRHDGPLDVFFSTSP
+LEDRTDGARPQRVRNMNDALSEPAAALRLSSVPGVFDRRLRVLDEALAAGRPLGLLYGEN
+STSPIPVDRVTAALADVMARFSAGGGTSVWFVRDLHWLDEIDGYLEDADARRDVQERGLA
+EFDAMAEAAYRLAAPSAESGAGFDALLARHGRGPVDWLPLPPAVSPANTVPADAPAIGEE
+GVTLLYAGGVGGIYGLGQYLTAVGTLDPQVRLDFVVRAGERSVLEDMLAEHGLADRPGLR
+ITTVPLEWYVPATRTVVGVVLLGGKYARFSFPYKTMSLIERGYPVLCFADMGIADFLERN
+RVGLGVARSSEAIRAGIVTLVRDGAPGMAEAQRSQSWAVRVATARAALED
+>SA211_MHAAABBN_00614
+MSTVLLLTTGTGPAEGLLLQDLRDSGHVVDVLDVASHAWLRRRPGLAPAPLYPWTGTHAL
+RAAGAQIAREMRRVTAAGAYDAILASGLGAAGFAARHVEEEFIPLLRRGDLDFSAARRHA
+EEDFAALTRAVDRLFLADEWEFDKALSKGSRSAHLRHPRVGLAPQTLAPLAAEAETPRVV
+VLHPEHVDADRLAAQMEALQTAVDTVPGASLRSLSASALYRTRDLAAGRAFDAVAATRLG
+GATHVVLVGSSRDHAAVGELLVGTGFAERLVVEDTIGSGAWAAGHPGVRTGRGLRLVTEL
+AAALHGGPETHSAVDTVDGGTTDLLSAYRAAMTGRVDRTFEDLAVLRHDGPLDVFFSTSP
+LEDRTDGARPQRVRNMNDALSEPAAALRLSSVPGVFDRRLRVLDEALAAGRPLGLLYGEN
+STSPIPVGRVTSALADVMARFSAGGGTSVWFVRDLHWLDEIDGYLEDADARRDVQERGLA
+EFDAMAAAADRLAAPSAESGAGFDALLARHGRGPVDWLPLPPAVSPANTVPADAPAIGEE
+GVTLLYAGGVGGIYGLGQYLTAVGTLDPQVRLDFVVRAGERSVLEDLLAEHGLADRPGLR
+ITTVPLEWYVPATRTVVGVVLLGGEYARFSFPYKTMSLIERGYPVLCFADMGIADFLERN
+RVGLGVARSSEAIRAGIAALVRDGAPGMAEAQRSQSWAARVATARASAED
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002273.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002273.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ab02309a24fb538ca55d6c8158e2e19edaabb38f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002273.fa
@@ -0,0 +1,32 @@
+>KBS0714_MOLHKGIG_00893
+MAVATPAPRRPRMAMLVGNQVVGDSRVEKAAVSAVRAGYEVVVVGVSHRTTFNLGRYGSV
+PILRVPVTFRRHLAWQTLHGTARPDVTDWSAVLDPEEAAAMTAWDLAHEVGAGLLQAVVR
+GLSPHALPDRARGRLGRAARRLGRLGPARGRRDPAAMRGRRALKNFAAGRTGAWREVWPL
+IADYEDGFLRALIDLAPDLVHVHDRHPLPAAAAYDHYRAARGLPPVPWVYDAHEWLPGQM
+MPGPVDQRIAWKAAEAELIHEADAVVAVTDELAERMREYHALQERPVTVINGPWGTQLPM
+GPAERLPLRTELGLSDDVPLLVYLGKLAAVRGVGTLVDALPLLPGVHIAFVGSPDPDARQ
+GLRDRAAQLDVADRMHIVDYVPSASVTWYVSSATAGVSPLLPTPAHESAVPTKLRECLLA
+GLPLTVSDLREQARFVREQGVGTVFAPGDAADLARAVRDLLARRTELTAAARSPEIAARH
+GWEAAERALHGLWRRLVPTPAAPPPVEIAPDPAREPQPRGLLVVGDPPTVRPLADAWPAG
+AGPVTLRPPRDFPEGRGLVVGGPEAVWGVLQDWVTDDRAHGTVLIGGEGPLWGRAEQSPV
+HELLSLRARGRQVALVAGERILAGVERRLAAVPGHPWGGLDPDARAALDRRIRRQGRPFQ
+AALAAGVPVLSHRRVEALLTPGVLWLPAPIPTPTDRGPGRDGASAPRSVLILPGDRTSAE
+SAAVDELVAELAARGIPVEAPSGPRFRRRPDAFHGDVVVAPLHTEDLEVAALQALAAGSA
+VVAGPPVTPAPDECAPPVTETDDATLLATVLGLLEETSAAAGERRERAREHHARLHAPEA
+VLVRLQALLSPAETTDGPAAV
+>SA211_MHAAABBN_00615
+MPVDTPAPRRPRMAMLVGNQVVGDSRVEKAAVSAVRAGYEVVVVGVFHRTTFNLGRYGSV
+PILRVPVTFRRHLAWQTLHGTARPDATDWSAVLDPEEAAAMTAWDLAHETGAGLPQAVVR
+GLSPHALPDGARGRLGRAARRLDRLGPARGRRGPAATRGRRALKNFAAGRTGAWREVWPL
+IADYEDGFLRALIDLAPDIVHVHDLHPLPAAAAYDRYRAARGLPPVPWVYDAHEWLPGQM
+MPGPVDQRIAWKAAEAELIHEADAVVAVTDGLADRMREYHALQERPVTVINGPWGAQVPM
+DPAERLPLRTELGLSDDVPLLVYVGKLAEVRGVRTLVDALPLLPGVHVAYVGSPDPGARQ
+GLRDRAAQLDVADRMHIVDYVPSASVTWYVSSATAGVSPLLPTPAHESAVATKLRECLLA
+GLPLIVSDLREQARFVRDQGVGTVFAPGDAADLARAVRALLARQAELTAAARAPEITARH
+GWEAAERALHGLWRRLVPTPAAPQPVEIAPDPARDPRPRGLLVVGDPPTVRPLLDAWPAD
+AGSATQRPPRDVPEGRGLAVGGPEAVWGVLQDWVTDDRAHGTVLSGGEGPLWGRAEQSPV
+HELLSLRARGRHVALVAGERILAGIDRRLAAVPGHPWGGLDPDARAALDRRIRRQGRPFQ
+AALAAGVPVLSHRRVEALLTPGVLWLPAPIPTPTDRGPGHDGASAPRSVLILPGDRTSAE
+SAAVDELVAELAARGIPVEAPSGPRFRRRPDAFRSDVVVAPLHTGELEIAALQALAAGSA
+VVAGPPVTAAPDGCAPPVIETDDATLLATVLSLLEETSAAARERRERAHEHHARLHAPEA
+VLVRLQALLSPAETTDGPAAV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002276.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002276.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ffd8a2c3cd74cd57196460f0b63c5afd4783a5cf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002276.fa
@@ -0,0 +1,6 @@
+>KBS0714_MOLHKGIG_01041
+MTRSEDVIITQDAERSDVFALVESLADGQKPRALNVPAGEDAHTTPDTVETGREVPAGAL
+GALAALGAGLVLMARGRVRRV
+>SA211_MHAAABBN_00754
+MTRSEDVIITQDAERSDVFALVESLADGQKPRALNVPAGEDAHTTPDTVETGREVPAGAL
+GALAAVGAGLVFLARGWVRRV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002278.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002278.fa
new file mode 100644
index 0000000000000000000000000000000000000000..fa3902c93faa0074a39c89cb4058646fc415ea55
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002278.fa
@@ -0,0 +1,14 @@
+>KBS0714_MOLHKGIG_01389
+MIRVEAGMSTARFCQLFDMPERTWRRWQAKARTGTAVKGPWPQPGRQAARELVVKHALAH
+PAWGHRKIWAMVRHDGHVVSEATVLRILRDEGLILPAQYQRERRKLAERRKAAFATEPSG
+PNQVWQLDFSEFETTTGGTWRLAGCRDYWSKYEHPFHVSPTGNQHDAIDAIELALADYEA
+MFGHPLVEACPVDPETGELLPVVTIVTDNGGPFRSFRFESFIAAHPELHHVRTRVKTPGQ
+NGSRERGFGTLKYERLYLDEIDDAIVLAERAEDYRIEYNELRPHEAISWNRPKEVHLGLA
+DPTTPTFKTKEILPTT
+>SA211_MHAAABBN_01121
+----------------------------------------------------MVKHALAH
+PAWGHRKIWAMVRHDGHVVSEATVLRILRDEGLILPAQYQRERRKLAERRKAAFATEPSG
+PNQVWQLDFSEFETTTGGTWRLAGCRDYWSKYEHPFHVSPTGNQHDAIDAIELALADYEA
+MFGHPLVEACPVDPETGELLPVVTIVTDNGGPFRSFRFESFIAAHPELHHVRTRVKTPGQ
+NGSRERGFGTLKYERLYLDEIDDAIVLAERAEDYRIEYNELRPHEAISWNRPKEVHLGLA
+DPTTPTFKTKEILPTT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002279.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002279.fa
new file mode 100644
index 0000000000000000000000000000000000000000..af6d89494b460584b76e54078b0ef1b21ca70f5a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002279.fa
@@ -0,0 +1,18 @@
+>KBS0714_MOLHKGIG_01488
+MANTRAPNSKLAPGEHSIDRVK-PTKQADGTYVLRWRVCLPDGTVKPGRSQGPTVAEVRR
+RAREKVGDLLATSADGSWKPSSSIVDYIDKVSIPAVDAARLAEASRRRYRVALN----QW
+KTVLGSKTIAQTARVRTLEAALKRIAEEHGSESARHCKTVWGKYIAQQLVRDEVLSGNPL
+---AGMSVDLSSSKPARPRAERTLTREELGAAIDWLLSLDPAAGVEKPARGRWSREDAVA
+KRRNVIDLALLQAASGLRVQEANALTWNVFDRSADVRRTK-------TGKGRRVPLLFP-
+---------------DVVDHLAERR-SLGGAYVIGAPTDPDKQWDRDACRKACATFYPEI
+GAAIDCEVFEHGRTHLWRGTLNSLLV-AVPVEVRAAFLGHD-EDTNRRYYTDVTDPAPMV
+EAAKA------------LR
+>KD337_NAFOICDF_00216
+M-----PRPPLAVG--TWGRISDPLEVAPGVFRAMAKVRDVDGVTRKVEARASSKERARR
+TLEARLRARTAPPA-GEVTPDTRVRD-VARLWLAEVEARGRAANTVKRYRITVDLHVCKA
+RGGVGELRVRECTTSR-MEAFLRGIARDHGAPSAKVARTVMSGVLGLA-ARHDAIQGNPL
+REVSPISIPRKEVRALSPADVRVLRRRL------------AAWQSEPPVNGRRRRPD---
+---DLLDVVDVMLATGCRISEALALRWQ--DVDVDARKLAITGAVVVAGRGGAVRQDHPK
+SAGSVQTYTVDAHTADMLRGRWERSMDLGLVSPMVFPSSTGTVRDPSNYRKQWRTAREAI
+G-------FEWVTPHTFRKTVATRLADAEGLAAASAYLGHSGEAVTRTHYRAKAPEAADM
+TAALAGFWGDAEGGEGEVP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002280.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002280.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5e2095b32ef2a040a9f49289d1b3bf5f3cd9af0a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002280.fa
@@ -0,0 +1,12 @@
+>KBS0714_MOLHKGIG_01605
+MMHDERPTGRLGLALGGGGARGLCHIGVWRVLEELDIRPDVLAGTSMGGLLGALIAAGHD
+AASLEKIERSVDWPRLINWGLTGGILSSERLRAWLRELLPDTFEELQIPLVLTAADVVEG
+QTRYLHTGDLITAIQATTAYPGALEPVTVGDSVLVDGGILNQIPVDGVRFLGAQRVIAVD
+ATTLEPLERPEPGARTRTRRSPATSLRQAMRAIDVMQAQLTTVRLSLYRPDVLISPPIEG
+MTVADFRSSGVAIAAGEEATRARAEKLVELSRGRMA
+>SA211_MHAAABBN_01317
+-MHDERPTGRLGLALGGGGARGLCHIGVWRVLEELDIRPDVLAGTSMGGLLGALIAAGHD
+AASLEKIERSVDWPRLINWGLTGGILSSERLRAWLRELLPDTFEELQIPLVLTAADVVEG
+QTRYLHTGDLITAIQATTAYPGALEPVTVGDSVLVDGGILNQIPVDGVRFLGAQRVIAVD
+ATTLEPLERPEPGARTRTRRSPATSLRQAMRAIDVMQAQLTTVRLSLYRPDVLISPPIEG
+MTVADFRSSGVAIAAGEEATRARAGKLVELSRGRMA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002282.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002282.fa
new file mode 100644
index 0000000000000000000000000000000000000000..192dcfeeef745529824566b64ca559848992113c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002282.fa
@@ -0,0 +1,10 @@
+>KBS0714_MOLHKGIG_01607
+MFSASVIDDATGVNMGIGFLGVALAFGLTVVAMAYAVGHISGGHFNPAVTLGAALAGRLP
+WKLTVPYWIAQLVGGVAAGGVLLAIASGRPGYSLAENGLATNGYGELSPAGYSMGAVFLT
+EVLLTAVFLYVILGATDRRAPSGFAPLAIGLTLTLIHLISIPVSNTSVNPARSFGVALFA
+GGDALGQVWLFFVAPLLGAAVAGLSYRFVFPNTSRVTEELPEPAADGTRDAV
+>SA211_MHAAABBN_01319
+--------------------------------MAYAVGHVSGGHFNPAVTLGAALAGRLP
+WKLTVPYWIAQLVGGVAAGGVLLAIASGRPGYSLAENGLATNGYGELSPAGYSMGAVFLT
+EALLTAVFLYIILGATDRRAPSGFAPLAIGLTLTLIPLISIPVSNTSVNPARSFGVALFA
+GGDALGQVWLFFVAPLLGAAVAGLSYRFVFPNSSRMTEELPEPAADGTRDAV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002283.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002283.fa
new file mode 100644
index 0000000000000000000000000000000000000000..dbedae18f08e6424180726085ce87c4db17c0ba7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002283.fa
@@ -0,0 +1,10 @@
+>KBS0714_MOLHKGIG_01608
+------------------------------------------------------------
+---MSFLIPSVPVSCGCRREVREETGLEVTAGRLVAVDTRPSKADGRIGLRFLFRAVHPL
+TAADVAAIRLQEDEASEHSFVTCQEARKLLRPAIARRVDAAWDAAHCVYLEDGRPAAGVD
+QPAG
+>SA211_MHAAABBN_01320
+MVNLLLSVTFACGVAIAGLHVVNRRFIAPMYDVVLNLAAFLAAVASSVLLGHVLPAVFAA
+LAVLAWLILAVRTV----RARRAGHKLEVTAGRLVAVDTRPSKADGRIGLRFLFRAVHPL
+TAADVAAIRLQEDEASEHRFVTCQEARKLLRPAIARRVDAAWDAAHCVYLEDGRPAAGVD
+QPAG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002284.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002284.fa
new file mode 100644
index 0000000000000000000000000000000000000000..88653b43af14d6ba200bc97514e5a798bbd68f03
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002284.fa
@@ -0,0 +1,6 @@
+>KBS0714_MOLHKGIG_01616
+MSISASEARKTLFPLIERVNADRDAVEIVSRKGNAVLMPADEYAAWQETAYLFRSPANAR
+RLLDAYERARAGSVEEHALDRMDGDA
+>SA211_MHAAABBN_01326
+MSISASEARKTLFPLIERVNADRDAVEIVSRKGNAVLMPADEYAAWQETAYLFRSPANAR
+RLLDAYERARAGSVEEHALDRLDGDA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002288.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002288.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6589dace7b16edbb8dc584021a291aa027da48c9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002288.fa
@@ -0,0 +1,10 @@
+>KBS0714_MOLHKGIG_02061
+MNNISEVTDRLASNETGMEPWLWMPLLKLLALGDPVDVSDLAAATGRAGEEVRTALKAMG
+DTEYDGSGRIIGQGLTQRPTQHRFEVNGEQLYTWCALDTLIFPTLLGASARIESSHQATG
+TPVRVAVTAMGVTSVEPATAVVSLVNPEDISSVRSSFCNQVHFFASPDDAAPWLETHPGG
+TIMPVKEAYELGSSMAEKMLTHTPGPATDQVSNGVQSCAC
+>KD337_NAFOICDF_02221
+MNNISEVTDRLASNETGMEPWLWMPLLKLLALGDPVDVSDLAAATGRAGEEVRTALKAMG
+DTEYDGSGRIIGQGLTQRPTQHRFEVNGEQLYTWCALDTLIFPTLLGASARIESSHQATG
+TPVRVAVTAMGVTSVEPATAVVSLVNPEDISSVRSSFCNQVHFFASPDDAAPWLETHPGG
+TIMPVKEAYELGSSMAEKMLTHTPGPATDQVSNGVQSCAC
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002290.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002290.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9eb141f0bdbf2e7fc04a4d0eab0511514bdb3172
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002290.fa
@@ -0,0 +1,14 @@
+>KBS0714_MOLHKGIG_02234
+MNMARTTEPVTLAGTWDVLLSHAALLGAAMIVEEELGAGAVRLRWTDEPDSRPQLCGAGL
+DAAAFGSLIHRHATRHVQNPGGWLYSTDAVAGSLFSARTKMPASEHGWADLLHDRTEVAR
+PLRGLDSALVVGLGERAWWHRTSKSFRPDHGAAAWEMRTRNKGMEFIAHSLLPTGRAVAG
+RAVEAVTSGLLGTTVEDEPGKNKPDSRTATGMAPLGPVDAARAWVGLWALAALPVWADSH
+GRSVSSAHIPARRESLARLLMPVPTSWVTVARMQAALRSRYLLVAGEDATGPSLGSAETT
+AAQAILEEWGFAQILSFPVNVTGSASAPERRTLAARALR
+>TT9_LFPAFLNI_02166
+MNMARTTEPVTLAGTWDVLLSHTALLGAAMIVEEELGAGAVRLRWTDEPDSRPQLCGAGL
+DAAALGGLIHRHATRHVQDPRGWLCSTDAVAGSLFSARTKMPASEHGWVDLLHDRIEVAR
+PLRGLDSALVVGLGERAWWHRTSKLFRPDHGAAAWEMRTRNKGMEFIAHSLLPTGRAVAG
+RAVEAVTSGLLGTTVEDEPGKNKPDSRTATGMAPLGPVDAARAWVGLWALAALPVWADSH
+GRSVSSAHIPARRESLARLLMPVPTSWVTVARMQAALRSRYLLVAGEDATGPSLGSAETT
+AAQAILEEWGFAQILSFPVNVTGSASAPERRTLAARALR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002292.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002292.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c4be62c7c59590b06a42b4f8fb302ffc94329a37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002292.fa
@@ -0,0 +1,20 @@
+>KBS0714_MOLHKGIG_02236
+MGGLVISADFPLGVYTGHGPDGGAERFPDVARLFSALVQAAAAGTLSTGDPEAPFTAESL
+AALDWLEEHPPDALVLPGHTPVAPGVRRFAYRKEGVFLKEVGKTNYKVTGRPVSDGTALG
+GPVQWVWDDGPSGTDTQVCSTLEQLCADVPHLGEASSPVRLTVHEGEGLPAPTHRRDRNA
+SLRAVPGAVRQAMPSPGRRAELDRAHAATTLGRKPSASGDKHTTSAVPHATLPPRDHLRS
+GIFAPVEHHEPDVPWTQVLAVPVIGANSTVPEERYVSVCVALHRALVSRLGPDAPPEITG
+RYAPSVAPPANRVALHLAPGDLPNLPFSDGRDRFLVLVPRGMPGPALGMLASALAGVRRV
+VTSEHQLTVAPEEIEVYDGTEFWKAPTEGAVRTWDAQPAVVVERRLKSKPPIRDVDLAAA
+WSLGNVLRDVEPAFATKDPVARHAAVVESGAQLRGRAFRTLTPTAYVHRTDRRSPIEPFR
+LTLTLSTAVPDRAILALGQSRHLGCGLLVPTDIPGSTQERS
+>TT9_LFPAFLNI_02168
+MGGLVISADFPLGVYTGHGSDGGAERFPDVARLFSALVQAAAAGTLSTGDPEAPFTAESL
+AALDWLEEHPPDALVLPGHTPVAPGVRRFAYRKEGVFLKEVGKTNYKVTGRPVSDGTALG
+GPVQWVWDDGPSGTDTQVCSTLEQLCADVPHLGEASSPVRLTVHEGEGLPAPTHRCDRNA
+SLRAVPGAVRQAMPNPGRRAELDRAHAATTLGRKPSASGDKHTTSAVPHAALPPRDHLRS
+GIFASVEQHEPDVPWTQVLAVPVIGANSTVPEERYVSVCVALHRALVSRLGPDAPPEITG
+RYAPSDAPPANRVALHLVPGDLPALPFSDGRDRFLVLVPRGMPGPALGMLASAVAGVRRV
+VTSEHQLTVAPEEIEVYDGAQFWKAPPEGAVRTWDAQPAVVVERRLKSKPPIRDVDLAAA
+WSLGNVLRDLEPAFTTKDPVARHAAVVESGAQLRGRAFRTLTPTAYVHRTDRRSPIEPFR
+LTLTLSTAVPDRAILALGQSRHLGCGLLVPTDIPGSTQERS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002294.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002294.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6412ae503dc0b9efe96b2ca84e1f9dd5470ebd4a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002294.fa
@@ -0,0 +1,14 @@
+>KBS0714_MOLHKGIG_02248
+MAATDHTLNPRAGANPSAAPNRLVRRRAVIGLLTGAPLLAACGGDPLSSDGGGQGSGGSG
+SGG-DGGGTVRVGSANFPESEIIGELYAQVLEAKGLTVERKMQIGSREVYLGALKDGSID
+LIGEYTGNLLAFYDKQAKAKTSEEVFAALQKALPDDLEVLAEAKAENKDAWCAAGDWAKQ
+HGISSYADLKDYDGTLRVGGPPEMSQRDYGAGLARVESVYGVPADRMEFTPISDGGGPLT
+VKALKDGDVDLANIFSTTPAIEENGFVMLEDPEGMVTPQNIVPLMAKDRVTDQIREAVES
+VQKVLTTEDLMAMNAENSGEQKKQPREVAGEWLKEKGLV
+>KD337_NAFOICDF_00459
+MAT-----SPRPSAPLSSALSRRAPRRAVLGLLAASPLLAACGGDPLAE---GSSSPAPG
+SGGTDAGGAVTVGSANFAESEILGELYAQVLEAKGLQVERRMQIGAREVYLDALKDGSID
+LIAEYTGNLLGYVDKEATATSSADVEAALKAALPDHLTTLAVAQAEDKDSYNVTKAFSEE
+NGITSLADLAAHPGTLRVGGLPELAQRDYGAGLAGLEEVYGVPQDKLEFTPISDGGGPLT
+VRALVDGDVDLANIFSTTPAIKDNGFVTLEDPKGMITAQNVVPLMAKDKVTDRIREAVEA
+VQAQLTTDDLLAMNAANAGEAKRQPRQVAADWLRQKGLV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002298.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002298.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a2c223e4ef3ccbf66390dedf191bf735f2eafb1c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002298.fa
@@ -0,0 +1,4 @@
+>KD337_NAFOICDF_00003
+MRSFTRQDQNNNPSEKGRLLSQDPTVCQHQHATTNHMLSNPKAYSHPAGTTTGTIH
+>KD337_NAFOICDF_01380
+MRSFTRQDQNNNPSEKGRLLSQDPTVCQHQHVATNHMLSNPKAYSHPAGTTTGTIH
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002302.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002302.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8fef301da161af1742ee0d85fdfb7455d2d939e7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002302.fa
@@ -0,0 +1,10 @@
+>KD337_NAFOICDF_00156
+MNKSEEAYARLTQKIETGELPPGAILSEAALIDAAETGRTPLREAVQRLIRDHWLLVGGG
+RGLQVPPISVDDQLERLEVRRSLEALAVGLACARADEEQLAAVAAHVRHLRTVEDLPAYV
+AAVGRSHELLRTIANNRYLADSLVPLQGLSRRFWLATTKGLPDEVERGRAFYVPALEAVT
+RRDSAGARAGVLALHDFLARSALDYAARRAAHGSAEPPAPWAAGR
+>SA211_MHAAABBN_02187
+MNKSEEAYARLTQKIETGELPPGAILSEAALIDAAETGRTPLREAVQRLIRDHWLLAGGG
+RGLQVPAISVDDQLERLEVRRSLEALAVGLACARADEEQLAAVAAHVRHLRTVEDLAAYV
+AAVGRSHELLRTIANNRYLADSLVPLQGLSRRFWLATTKGLPDEVERGRAFYVPALEAVT
+RRDAAGARAGVLALHDFLARSALDYAARRADHGSAEPPAPWAEGR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002306.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002306.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d2e027c39e3e2e7ce6412f10bbf2b5e86bc12455
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002306.fa
@@ -0,0 +1,8 @@
+>KD337_NAFOICDF_00324
+MPEYDFETYPTTPDAMAKYLQEREAAGNPMTGEEALAYSDWSRERGRAIQAKIDARKTPE
+ER---EEFRRFAEEFERQCLEDEKRFAEEAAREAAEDAERAAQGKRPIKRERDIVTPKGF
+SGIGVTPRGW
+>KD337_NAFOICDF_00344
+MTKYNFEAYPTEPESMAKYLHEREAAGKPITRAEGEAYIEWSLAKEQEITERKE-RMSPA
+ERAGHEGFQREEEPMGAIFDLEDARSEVEALVEAAEDAERAAAGKRPLKRERDIVTPEGF
+SGMGVTPRGW
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002308.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002308.fa
new file mode 100644
index 0000000000000000000000000000000000000000..caed040e19facdc2eef35636cf6add445e51e37d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002308.fa
@@ -0,0 +1,6 @@
+>KD337_NAFOICDF_00332
+M---------GAID----------------------------QSTDNDADYDVIEQTWLD
+AGQTVKELVDRARTLMEENDDIAAGAHQKAGNHMGLVHV
+>KD337_NAFOICDF_00337
+MTIQYDSAAAAAYEDEVLRIASRIETILGDREQQKRFVADNYQSTDNDADYDVIEQTWLE
+AGQTVKELVDRARTLMEENDEIAAGAHQKAGNHIAGMRA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002309.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002309.fa
new file mode 100644
index 0000000000000000000000000000000000000000..3539d981c26c290ad728185ede9ffdf2fdb2da4b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002309.fa
@@ -0,0 +1,12 @@
+>KD337_NAFOICDF_00345
+M-ETFWGLTTPAWTAIYTLLTAGLLVAAIVAGLYAKRQWETARDAQVEATRPYVLVTLEP
+GERSMAMVDFVIRNIGVRPAYNVTISIEPHLLRAREEGGNEMAAMRLLHEPTAMIPPGQV
+TRMFYDRMSDR--SGRDDLPVHHTAVVSYVDSS------GREWTDTFDLDLRVLEGGMFH
+SYDDLHTVSQTL---KKMARTLDRSRVLKEGEMDVVAVTENRADH-QVRTLLEEYHRQVE
+IANLHRGKPGYVDRVRSFDARAESIAEQLRALGVSVQGAPQD
+>TT9_LFPAFLNI_01145
+MDDTFWGMSATGWTAYYTLLTAGLLLVAIAAALYARNQVQIARAAQREATRPYIIVTAEP
+SPIGWRVMDLVIRNIGQRPAYNVKVSLTPEPVRANETPGAPISEVQWLREPIPMLAPGQE
+LRTFYDAMEERLNSGRSDLPTSHDYSVEYDEGTVAAKKGKRDHRDSGVVDLNAMAGAMQP
+DVYNIHHVASALRDIKKEVAKMNRSGTYIQPASEVRDILDQRGPRTKPRSTV--------
+--------PGPLPAERS----------ALRRLYDRFTGR---
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002313.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002313.fa
new file mode 100644
index 0000000000000000000000000000000000000000..94f561c030cf8c0d7432916b58afffe14fa85d6b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002313.fa
@@ -0,0 +1,12 @@
+>KD337_NAFOICDF_00628
+MAINWRRAQYLLAEDLTDIPVRYIDELFGSNGIALGPENPQDVDTSVRRARMRRYLTTLD
+LDTNRADQQRFADVMAERYRKIALVHQHGNTDETQWKLERWTTLLRAAGFQVDTTALSVT
+WPPGPQMGTLAPDVLAHLNDPSAIEDHLERIHTTIDSDPRLAVATARSLMESTAKIVLTS
+RDKTYTATESLTKLVSRAQASLGMSPKDLGGEQPEVRRLLQSLQGIAAPISTLRNDTNVH
+HGAEVVPQWVRPRHARLVLGAAQLWCQTVLETLSDPTAPWRVTDAAAQR
+>KD337_NAFOICDF_00696
+MAINWRRAQYLLAEDLTDFPVRYIDELFDGNGIALGPENPQDVDTSVRRARMRRYLTTLD
+LDINRADQQRFADVLAERYREIALVHQHGNTGETQWNLDRWTTTLQAAGFRVDTTALSVT
+WPPDPQMGTLAPDVLAHLNDPSAIEDHLERIHTTIDSDPRLAVATARSLMESTAKIVLTS
+RGETYTATESLTKLVSRAQTSLGMSPKGLGGEQPEVRQLLQSLQGIAVPISTLRNDTNVH
+HGAEVVPQWVRPRHARLVVGAAQLWCQTVLETLSDPTAPWRVVDAAAQR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002314.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002314.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2a494ca658e2c4372884ee218bb8f7ec72d8c0dd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002314.fa
@@ -0,0 +1,14 @@
+>KD337_NAFOICDF_00633
+MSTLLPIRPRPAPEEALDSYLERVATANGVTTSGFVRQLTTEARAPLRFTNIAPPPPILD
+VLASWTGTDRGLLQDCLLTRYPVIPFIDSQNRHGTRSVVAHGWVLLNRSQACPWCLAETG
+VWKITWRLAWVTACLDHDRLLATDCPGCQKPLRTTHHGALRPAGPGARCGNPRPQGQGKR
+CPFDLSRISPLSAPPPVLQQQRRVERALRGAEVEVAAIALEGTTYLRQLQALTSAAMGLS
+APTTAVQ-PEYSEGVPAEISTLSGRARP-----APRPADIRAAAYVRRDRTIFAP-----
+----------P-------------------------
+>TT9_LFPAFLNI_02215
+MITPLPVRVTPGPNEAMDSYIERVAAANVLAITPFTHHLKRLSGSTLRFLNAAPSPELVA
+TLARLTDTPESALHELTLSRYEVVPEIHNHHRYAARAASAKGWFSLIRTQACPACVGEGQ
+PWASYWRLPWVTACLKHGCLLITRCPGCRVKLRSTRLQGLRAGGFTPLCGNPRATGRVPQ
+CEDDLGTTALTLAGQPVLVQQQVVLAALRGSTVFCHGEPVTGTEYLRRVRSIAVLLFHTV
+AISTATGLPAWAQKLRAEAQARTKERGPRWGVSAPDCPQSRAAVFLIAHQILTGPVGAGR
+GSLDVWLDLVPPSNEGTRAWAEDHTTTPDAISYLIG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002315.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002315.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e127cb6a65a5a7d08440b1c698dc09c608f88d19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002315.fa
@@ -0,0 +1,20 @@
+>KD337_NAFOICDF_00634
+MTDQEHPPSALAPIVGESLSGYVRRFNATGLTP-PLALPPRYADADLPPGLTDAVHRSTG
+LDAGQIRRMTMAGWPLILRGRGLHHRRGWALHRHDVWLCPSCTPLTGYRALRWRLALAPV
+CLRCHTLLTHERTFTPTRAATTEELARLRRLDELTTRALQGSKASRSHLSVLRRIC---A
+AGDAHEPDGDVLPRPPLGGTSRPAGNQRGTHPPGEPGIVMKQLATLDPALLNESRARAHL
+QQLQHQDSLPSSFVVAPAPFQPESPTALALARARRRALLRQLTDLCAATGLRPQHIPTVV
+DPWRSTRWSRLRDLEDQAFEALALHTLLLEALGEDATGSAVFVAHGIPAVVNQHDLLTRV
+RTRGTLTPGECDRLLARAQALVDDGLVDYAYRRGTLLAVPSLPRI--PAVHLPRHPFWPA
+RTLVPAWAWVEYARGLPDSGPAPDLSLESVDRFHADLDPEARLRLLEAFDTHVRGEDWAA
+IASAAGSSFPTFASAHQRSA----------
+>TT9_LFPAFLNI_02216
+MSR----PVHMPPLPGESLTGYLQRYRQSGMAPIRLDVTGVFDNASAPASVVVPVHTATG
+LAPEQIKAMTMDRWVPSIRGYRVQRRHGWKLHPHQWWICPQCTVKTGYQSLRWRLALQPV
+CLRCHTYLVDPENPQIPRPVPEATLKIVQSYDRILDDALSGSLSARQRLSGLRKTCKGMA
+QAMAHD------QQPASAGAQPSTLTWWGAYPCGDP-VTVGHLMTLTRAMVTRGPARRRT
+VP-RRDRPLQSKRAVSGA-------TVTAMSRARLRATVSKLAEWSQSTGLSPRHVPTIA
+QPSLYGT-ARRPSMVAQAGTTLALHMLLDEATGIPVSSARTRAAHGLSGEPLEHRLLHSV
+ITRGGLEEDQQRLLLRTAEDLITDGLIDFRLRRTVFRSQPHLPRLPTPAHWIPAGEEFSA
+ETMTRAWIWMHVARGHPQHGPVASVRLDEIDDFDHLLDPETRMHLHESAAAQIDGPDLAD
+IL--------TTTTTHNRRARQQDLREHAG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002316.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002316.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ddb0d4ca8c890b20f105601c6ced5af139c1b4b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002316.fa
@@ -0,0 +1,28 @@
+>KD337_NAFOICDF_00636
+M--NFSVDLNIGDRVLTDAGPARVKSMWALGVELETINEPAKLVPWTDLIIRPTIDGQAQ
+AVDAALHPWWDQLPEKVQQDAIFKMECVLEILTGFRSGLASLAQPHEPVVPFGPFSQASV
+SAQCEAMARLVSFEKSADRELMRRVQDGELDSPGVTPRAVHHWVRRWQASGLRGLVDGRA
+LRSAQGFGALDPRFLKIAEQEFARFDGSASATNRQEIHRRIQVRMHAEGITDAHLPQRLV
+SDYLSHRFAQLGKTTRAHRSRRHRKISSTASAALHHLGHCATDVTRADNLVYDEFTGKPM
+SVEIATIMSVPARVIVAVRVFPKSVSATEVALLLYDAMRPQSMLIDQDGASDWRWCGVPT
+SLQLPEQASPLANDPASG-LGEHAIPAMTPTHLRMDNGSIFRSEQLRRLALHWSITLSHS
+RGTRPTDNPHIERFHETLQRFYQQLPGYKGRNVSERGSWTGVVAEAPLLTAADLERRLRQ
+FIALDYHRRPHTGLTLPGAPEVNISPLEMFDWILATTGRIHVPQHPDLIYQFLPTRWLTP
+GHAGVEYKNMTYDAAVLDEFRSKIPGRFRDEDAKVPFHYDPRDATRLWFRHPDTDRIHEI
+PWRNRHLLHAPLTDVVRDEARRRIRARGGPKALTGALIDRQLIEEIGHLAHTRADETWTT
+TMAASRMRFDQARRDHDEAALAHRLTTPEAPTD-LEHGGRHLRLVPPDAMPDRT--ATNG
+LAGLFEPWPDYAQE----I
+>TT9_LFPAFLNI_02218
+MRAQMSAPIQAGDSILTEHGPVEVIAPQSTGLLVRAPGGQETLITHAQVIPRRFQNGTIA
+GVMASLYPLWDQLDQAVRDDALFKLECVNEVNTGYRRGVASLALEGEPFYPFGPGWGVSL
+RARYQAMARLVSLEKRVDRVLMRRVYDGEVQRPEIGLRTLQSWGESFEEHGLRGLIDGRA
+LRKVQDFGVIDVRYRQAADEVFGQFDGEISAVNQQEIQRRIYALLRQRGQSDVQVPDRLE
+SDFLRHYYRRLGKGTRAHRSRSLRKIATTSSAALHHPGYCASDVTRADNLVTDEYTGKPI
+SVEICTIISVPTRVVVALRVFPRSVTSFELGLVLYDAMRPFSMVAADGAIDDWRWCGVPT
+GLQMSAPQCPRHVKEDEGPLGVHYIPAVTPVEMHTDHGSTYISDQFRTLLQQFGITLSLT
+RGGRPTDNPHIERFHETLQRAYQQLPGYKGRNVSERGSVVGVQADEPLLTARQLEAYLRA
+FVAVDYHRRPHTGLIWPGTEEQALTPLEMFDAMLASTGRLHYPQHPDLIYQFLPIRWLTI
+RHAGVEYKNMAYDAEVLDEFRDCRAGAFRDKDAAAPFHYDPRDTTRLWFRHPETDRIHEI
+PWRGRHLLYAPMVEIVRDQALAQIRRRAGRRH-SAKVSMLELIDEIGQLATAPRDETWAH
+KLSAARMRWDQGQRDHDEVAHARALQQAHVPKPRTSRAGRDHLLSLPGGRTEDTPPAGFG
+LADLSEPWPDYPEEHDELA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002318.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002318.fa
new file mode 100644
index 0000000000000000000000000000000000000000..90c5d7da8806fbf006d525d641590a58de07a52d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002318.fa
@@ -0,0 +1,30 @@
+>KD337_NAFOICDF_00642
+MTSTTH-------HQEQPVSNRDVIRVRGARTNNLRDVDVDIPKKQLTVVTGVSGSGKSS
+LAFDTIAAESQRLLAATYPAFVQNLMPHLPRPDVDTLEGLSASIVVDQAPLGANPRSTVG
+TATDAWSLLRQLYAGHGTPPVPGPHALSFNAAT--------------------------G
+MCPACEGTGRTATLDVDLVLDRSLSLNDGAITFPNFTVGSLFWKVYARSGAFDNDKPVQS
+YTPAELEHLLTGTGPNVDTGTYPMAYEGVLTKITRLYLSKDPAALKPRLREALELAATTG
+PCPGCAGTRLNSAARACTIDNTPITTCHTMPATDLHRWLADLDLPAAAPLIAQLQSLLAN
+LTRVGLGYLALDRPTSTLSGGEGQRIRTVLHLDSALTDLTYVFDEPAAGLHAHDTAQVVT
+LLHALRDKGNTVLVVEHHPDVITAADHVIDLGPGAGTDGGTITFQGTPAQLTHTHTPTAA
+ALAARPTLNLTPRTPTGTLRIRDATTHNLHHLDVDIPLGVLTCITGVAGAGKTSLL-TNL
+PRRDDLAVIDQRPIRGSRRSTPATYTGVMDWLRDAFAKAGSTPGHKLKPAMFSANSAGAC
+PDCTGLGVTYLDAPGSGPVPVTCTTCNGARYTADVLTHTLDGLTIADVLGLPVADAATRY
+TNTPAGPP-----LAGLVDVGLGYLTLGQPLSTLSGGERQRLRLATRIAQSATVYALDEP
+TTGLHMSDVDTLTRLLHRLVDTGATVVVADHHLNLIATADHVIDLGPDAGPGGGHITYQG
+-PAADLATTDTHTGRALAARLAL
+>KD337_NAFOICDF_01228
+M-PTPHASAAPAPHTAHPADGHDVIRVHGARTHNLQDVSLELPKRRLTVFTGVSGSGKSS
+LVFGTLAAESQRLVNETYPSFVQGFMAAMPRPDVDVLEGLTTAIVVGQERMGSNPRSTVG
+TATDATALLRILFSRLGTPHIGSPQAFSFNVASVSGAGAVSTQKNGRTVKERREFSVTGG
+MCERCEGTGRVSDIDLAALYDEELSLEDGALKIPGYSMDGWCGRIFRGAGLFPVDTPIKK
+FTQRQLDALLHKEATTITVDGINLTYLGLIPQMERSMLSKDVESLQPHIRRFVESAVAFG
+TCPDCHGTRLNERARSVTLGGASIDQVCALQITDAAAWLRGLDAGPAAPLVAGLQELLDA
+FERIGLGYLSLDRATGTLSGGESQRVKMIRHLGSALTDVTYVFDEPSVGLHPHDLARVNA
+LLTDLRDKGNTVLVVEHKPETIAIADHVVDMGPRAGADGGRVTFEGTVEELAASDTLTGR
+HLKDRAALKGEVRTPTGVVEIRGASEHNLQDVDVDIPLGVLVAVTGVAGSGKSSLVHGSL
+AGREGVVVIDQAPITGSRRSNPATYTGLLEPLRKAFAKANG-----VKPGLFSPNSDGAC
+PACKGAGVIYTDLATLGGVESVCEECQGRRFLPEVLELTLAGRSIADVLEMSVDQAAAYV
+AEGEARLPAAQKVLGRLQDVGLGYLTVGQPLTTLSGGERQRLKLAVQMGERAEVYVLDEP
+TTGLHLADVDQLLALLDRLVDGGTSVVVIEHHQAVMAHADWIVDLGPGAGHDGGRIVFEG
+TPAALVADASTLTGRHLKEYVGA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002322.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002322.fa
new file mode 100644
index 0000000000000000000000000000000000000000..987fe13603bbcd6f3278b2887ceef3ff9b00fdf5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002322.fa
@@ -0,0 +1,4 @@
+>KD337_NAFOICDF_00669
+MPRRDSHQDLRQKLEAVETKISHHLFQSPGIAESLRIVDQSTGKEADAVDAVLTSRGPA
+>TT9_LFPAFLNI_02015
+MPRRDSHQDLRQKLEAVETKISHHLFQSPGIAESLRIVDQSTGKEADAVDAVLTSRGPA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002323.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002323.fa
new file mode 100644
index 0000000000000000000000000000000000000000..59805d118e000b439d08e29f4020cb30f7e724f4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002323.fa
@@ -0,0 +1,16 @@
+>KD337_NAFOICDF_00673
+MTRMSVLEAWTWINEYGSAIGAVAGVVAALVAIIALISAALDSKARSQPMIA------AE
+FRPAVDSDSSIDFIITNLGPTPARDITVTFNPPIVIPDDSDRLLA------PYLVKRYER
+PIPVLNPGQILSNTWWAGRAGTGNELTNHEPTPDEVNVTKIYAAAHRARTVFYTPEVSAT
+MRALQEDLRHDMIRTERCIEEHLVLHGGHVDHAHGPNPSLLELIIIDESERLTGNAIEWL
+RDQYDRTGIAMILIGMPGIEKQFTHYPQLYSRLGFAHQYRPLGHDELLFVLERQWRKLGK
+TLDPDDFTDAQAIAAVERITRGNFRLLERLLPQIQRVLKINELDVITNDVVEAARSTLVI
+GTT
+>KD337_NAFOICDF_00677
+MT--------------------------------------------SQFIVTKEHRRFAE
+FADAVRKQNTIG---------------VCFGPAGVGKTLSARRYAHWDSIGPFIAR----
+---------------WAARSE---------------DDTKIYAAAHRARTVFYTPEVSAT
+MRALQEDLRHDMIRTERCIEEHLVLHGGHVDHAHGPNPSLLELIIIDESERLTGNAIEWL
+RDQYDRTGIAMILIGMPGIEKQFTHYPQLYSRLGFAHQYRPLGHDELLFVLERQWRKLGK
+TLDPDDFTDAQAIAAVERITRGNFRLLERLLPQIQRVLKINELDVITNDVVEAARSTLVI
+GTT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002324.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002324.fa
new file mode 100644
index 0000000000000000000000000000000000000000..6f73c55ecda45b79b2924d5610a80a626ecd0629
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002324.fa
@@ -0,0 +1,16 @@
+>KD337_NAFOICDF_00695
+M-----------------------------------------------------------
+-------------SRRSLASLATAAAFVVTAVLGGAG------PAAAGTTYSAPLRTAVA
+SLPVAAEN-NAGYDRAAQFGD-WKDANRDCQNTRAEVLIAESKTTPKFTTARKCTVATGK
+WVSSWD------LRTHTSASTVQIDHMVPVHEAWGSGARYWTKAKRVAFYNDLGDARSLN
+AQTSALNSAKQARGPEQWLPP--KNQCQYIADWTAVKIRWGLKADATEKAFLVKKAASCA
+NTTL--------------------------------------------------KVTRY-
+------------------------
+>KD337_NAFOICDF_02179
+MLGCSGCLGLVALGLLLLSLLVGGFTGSPSPSAASQAPDGRSAAPSAPDAPGDPAGSAPA
+PAPTPDRAEAPVSDRAEAPAPAPAPASAPAPAPGDAGEAAPSSPAAEAPAADGTALAALQ
+SLPVKGRAPKTGYSR-EQFGPAWADVDRNGCDTRNDVLRRDLADVVLKAGTNGCVVLSGT
+LHGPYTGEVIAFQRGPGTSTAVQIDHVVSLSDAWQKGAQGLSAGRRAAFGN---DPLNLL
+AVQGSVNQSKSDGDAATWLPPLRSARCPMVARQIAVKARYGLWVTPAERDAMARVLRECP
+GQGLPAEGGPVDPSPETAAEPTPQAPAPTVQAPAPAPAAPAGGADPSFSSCRKAKAAGYG
+PYVQGVDPEYAWYRDGDGDGMNCE
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002325.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002325.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2290609f69d05b8f33d9dd222a261cb573cdf9a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002325.fa
@@ -0,0 +1,10 @@
+>KD337_NAFOICDF_00736
+--MTKSLISSAVVVLLILLVTVLTDASTW------LVGLLSGLACLAGAWCAPLFQSGSP
+YGGTFFGGWQSRWDGPKAVQLLAAGAAVAVSVVLNLFGGGVPAV---VGIIVALLVGALI
+PVPGDPA-----------------GGGHGADPEDA-------------------------
+---------------RPA------------------------------
+>KD337_NAFOICDF_00738
+MRMTPARVASAAVLAVLTLVCLLLMLDTWSFMGALLVSLIGAVLFVAGAWFAPLARSGDA
+LGGTPLRPWQAGFDGPKTTQVAGGG---LVALLVALVTGGAPLVGPILGVVAAVIGGRFL
+RIPSHAQVVAAVGPEVAEASEHLPGEHHDAAPADSVADPDTDPVPVPATEAADSEKPRHE
+HAADVSPETAPVPVIHPADAEHPHGSHAAMAHPDPVDDVPGDGEPTTR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002329.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002329.fa
new file mode 100644
index 0000000000000000000000000000000000000000..757c0f36a2feb5439127177aac78ab5705d67044
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002329.fa
@@ -0,0 +1,12 @@
+>KD337_NAFOICDF_01187
+M---------------------DTR----------------------------DDTELAP
+SATLGRRERAKAEKRARILAAARALFEERGFERTSMSEVARAADVAEGTVFQYAATKVEL
+LMMVVDALWGAHERATTTPSLSAFAAPGAATAGGETADRIAELISPLVTAMWRWSELATW
+VAREILFGADMPHRRRVLDHVDRLEEEIAARLQDGRADASGAIGAARDGATGTAGEEPGA
+AAAAGARLIVAGVLAELNRSRQRRIDGEDVDVVLRRLIDLVVAGAGAAR
+>KD337_NAFOICDF_02289
+MPVTLVSPRARGGEFATNVHMVDARPPLPSRSIDCAVVSHSRLAPESEPEPEPEPEPATP
+TRVPGLRERNKAAQRERILAAVRERLGRQGYRAMTTAQIAQDAGVAAGTVFTYAATKPEM
+LMMATHDRW-----KDSVPSALAGSLPEDRT------EAVRALVDPIVATAVAEPENSAA
+IARELLFGQPGAHHDAVLVLVRRLEEAIARIIADG---------------------DPGP
+RERTAADLVVMGVVLELHRDRTEGGRVEGLEERIERVIGLFI------D
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002333.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002333.fa
new file mode 100644
index 0000000000000000000000000000000000000000..81d82481e329eae0baeaa3ffa9a24d8dc2ce195e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002333.fa
@@ -0,0 +1,16 @@
+>KD337_NAFOICDF_01197
+MTEPVTYTPDIEHSVDREEDLTREILAQMGAAQRRTAGEHKHAHRDAHAKSHAVLKATLE
+VHEGLAPELAQGIFARPGTYEAVARLSSAPGDIHTDRTPAPRGWALKVLGVEGKRLLPDL
+DSHNQDFLMVNFPTLAFGTVARYQEMLGLLEKNSQSPELLQRLTTGAARVVRGAVETVGG
+TPSATLEGLGRDNAHVLGETYFTQGALRYGDHVAKISLAPASANVRALTGQDMKVKDFSS
+ISEIVADFFSRESAEYVLRAQLATDAERMPVEDASVLWDEEEAPHQPVATLRIEAQESYS
+HPRRVYGDDALTFNPWNGVVEHQPLGSIMRVRKRAYEQSTRFRHEFNDRPAPEPTSLDEI
+PD
+>TT9_LFPAFLNI_01532
+MTEPVKYTPDIEHSVDREEDLTREILAQMGAAQRRAAGEHKHAHRDAHAKSHAVLKATLE
+VHEGLAPELAQGIFARPGTYEAVARLSSAPGDIHTDRTPAPRGWALKVLGVEGKRLLPDL
+DSHNQDFLMVNFPTLAFGTVARYKEMLSLLEKNSQSPELLQRLTTGAARVVRGAVETVGG
+TPSATLEGLGRDNAHVLGETYFTQGALRYGDHVAKISLAPASENVRALTGQDMKVEDFSS
+ISEIVADFFSRESAEYVLRAQLATDPERMPVEDASVLWDEEEAPHQPVATLRIEAQESYS
+HPRRVYGDDALTFNPWNGVVEHQPLGSIMRVRKRAYEQSTRFRHEFNDRPAPEPSSLDDI
+PD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002338.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002338.fa
new file mode 100644
index 0000000000000000000000000000000000000000..53d606c0af6e0ce3ef13d248b1b71c21185ed815
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002338.fa
@@ -0,0 +1,6 @@
+>KD337_NAFOICDF_01788
+M-------------------NIYPDFGAFGDNTTLHTVIGALLTFVLVTAVLTMLISGIT
+WAIATANGNHTTATKARTGLLVALGTATLAGAGITWLNWLINLGDQL
+>KD337_NAFOICDF_01790
+MLDLMTSVLPTLPMMLPMEVDITPNDDGLPGIAQLRNIVAAVMTIGLILSVLALIISAIV
+WGFGANSSNPHLAGRGKVGVLVSCGAAIICGAAVTLINFFWNVGQSV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002347.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002347.fa
new file mode 100644
index 0000000000000000000000000000000000000000..a594593525cfea1352d801d3e1710412c2e0b80f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002347.fa
@@ -0,0 +1,8 @@
+>KD337_NAFOICDF_02318
+MEIAFASTRHFGQGEVLRHVSADYVLKDFMEMNKVPSAAMFRRSRWAEVGGYLESMRWGM
+EDYEFWVRVLRDGGIARPVPTAYYHYRSRENSRLSTLGTHAARDTHQAIVEANPEHHAIL
+LQAAFLRLEEMHDLHLEYRSYVHKWQDRFRPLIRARDFAKRAVRKM--S
+>TT9_LFPAFLNI_00519
+-----------------------------MDMNKVPSAAMFRRNRWEAVDGFQEGLD-GQ
+EDYAFWVRMLRDGGMARPVPAAQLHYRLRATSRAATAGSEYWEATRKAIISGNADHHEAL
+LRAAFERLDELRADLAEQKRYVQNWQRRARPLIAVRN----RIRSLLGG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002348.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002348.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9aba66ae10beef104607701655788437afe55ca1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002348.fa
@@ -0,0 +1,12 @@
+>SA211_MHAAABBN_00325
+MSTLTLSSKPLTDDRRAVLHRRIRWIVAGTITYNVIEAAIALAAGTVASSSALIGFGLDS
+IVEVLSAAAVAWQFATPDPHRREKVALRLIAFSFFGLAAFITVDAVRTLFGAGQPEHSTV
+GIVLAAVSLAIMPFVSWFERRTGRELGSASAVADSKQTLICTYLSAVLLVGLVLNSTLGW
+TWADPVAALVIAAVALKEGVEAWRGDACCTPASALIAGDQNEKDGDGCGADCACCAHSAC
+LQYRRTGW
+>TT9_LFPAFLNI_02006
+MSTLTLSSKPLTDDRRAVLHRRIRWIVAGTITYNVIEAAIALAAGTVASSSALIGFGLDS
+IVEVLSAAAVAWQFATPDPHRREKVALRLIAFSFFGLAAFITVDAVRTLFGAGQPEHSTV
+GIVLAAVSLAIMPFLSWFERRTGRELGSASAVADSKQTLICTYLSAVLLVGLVLNSTLGW
+TWADPVAALVIAAVALKEGVEAWRGDACCTPASALIAGDQNEKDGDGCGADCACCAH---
+--------
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002352.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002352.fa
new file mode 100644
index 0000000000000000000000000000000000000000..66966fa1b5852f9eb05f4f5ca3253eb32332fb77
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002352.fa
@@ -0,0 +1,18 @@
+>SA211_MHAAABBN_00769
+MSPASTSPRRVLAIGLGPFNLSLAALAHPLPDVEVEVVESRDAFVWHPGMMLPGAQIQVP
+FLADLVTFADPTSPYSFLAYLKAMGRLHRFYIRGSWYPLRREFSDYCAWVAAQLPGIAYA
+TTVTAVRWDDQADEFVVEAASAAGTSTHRADHVVVGTGTVPSLPAPLARVAEESARVGAS
+PVVHTGEYMGRREDIAGAGSVLVVGSGQSAAECALDLLNAGHPDLTWVTRSPRFFGMEVG
+QLTLELTSLDYERHFATLPRARRDEINASHRSLYKGISEYTIEDVYHALYERQVGPLDPA
+RLWPGTSVTDARLVAGPGAPRVEVTLRDEETGVTGGHVVDRVVAGTGYRHPDHPFLEPVR
+HLLRAEDGRTTANADHAIDVSGRRIFVHNTAEQPLGLTGPDLGMAAEHSGRILSTIAGRQ
+VYAQAESIAFQDFGAVAAGVR
+>TT9_LFPAFLNI_00997
+MSPASTSPRRVLAIGLGPFDLSLAALAHPLPDVEVEVVESRDAFVWHPGMMLPGAQIQVP
+FLADLVTFADPTSPYSFLAYLKAMGRLHRFYIRGSWYPLRREFSDYCAWVAAQLPGIAYG
+TTVTAVRWDEQADEFVVEAASAAGTSTHRADHVVVGTGTVPSLPAPLARVAEEAVRVGAS
+PVVHTGEYMGRREDIVEAGSVLVVGSGQSAAECALDLLNAGHPDLTWVTRSPRFFGMEVG
+QLTLELTSLDYERHFATLPRARRDEINASHRSLYKGISEHTIEDVYHALYERQVGPLDPA
+RLWPGTSVADARLVAGQGAPRVEVTLRDEETGVTARHVVDRVVAGTGYRHPDHPFLEPVR
+HLLRVEDGRTTANADHAIDVSGRRIFVHNTAEQPLGLTGPDLGMAAEHSGRILSTIAGRE
+VYAQAESIAFQDFGAVAAGVR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002357.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002357.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cf8c7cf79da782aced77516e3d8b3ac2f4314590
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002357.fa
@@ -0,0 +1,6 @@
+>SA211_MHAAABBN_01745
+MNAKPEKDLRRTVDILFRPARVAVLIDGCYWHGCPQHYIAPKANGGYWSDKVATNRARDL
+ETTRILTERGWLVLRFWEHEDPAVVAERVVAVVNERRPRRTTGAS
+>TT9_LFPAFLNI_01973
+MNAKPEKDLRRTVDILFRPARVAVLIDGCYWHGCPQHYIAPKANGGYWSDKVATNRARDL
+ETTRILTERGWLVLRFWEHEDPAVVAERVVAVVNERRPRRTTGAS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002358.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002358.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5f36b9ef8ccfbf3dac4fdd5d9a2911fc41d00699
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002358.fa
@@ -0,0 +1,12 @@
+>SA211_MHAAABBN_01747
+MNVFGPDILARTMSEPADPTKYGIRWQYHSRSDRHGKVASWGVAFDLLRSSSVMRQHARD
+GKIVLGVNLKLSDFETKKSKVLDLVIARPGGAATSARGESLVSLAQRYNMNLSGEEMGEL
+TSLPDIPVAPVGSVLVALEAKATMTAHVKSLPRLHDELTSSHISVHGESQTALAIGYAQV
+NVADVFVSSNPANVERIHLGQEPVVTSHKQPGDCQRVLDTLNTLRTRSSSIGIGFDAIGV
+TVLDLRNDDSPVKVVHSRPAPQPGDAFHYDSMIMRMATRYDTQFSGI
+>TT9_LFPAFLNI_01975
+MNVFGPDILARTMSEPADPTKYGIRWQYHSRSDRHGKVASWGVAFDLLRSSSVMRQHARD
+GKIVLGVNLKLSDFETKKSKVLDLVIARPGGAATSARGESLVSLAQRYNMNLSGEEMGEL
+TSLPDIPVAPVGSVLVALEAKATMTAHVKSLPRLHDELTSSHISVHGESQTALAIGYAQV
+NVADVFVSSNPANVERIHLGQEPVVTSHKQPGDCQRVLDTLNTLRTRSSSIGIGFDAIGV
+TVLDLRNDDSPVKVVHSRPAPQPGDAFHYDSMIMRMATRYDTQFSGI
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002365.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002365.fa
new file mode 100644
index 0000000000000000000000000000000000000000..52163581367f55345b58e3322bc26c7d51eb1537
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002365.fa
@@ -0,0 +1,8 @@
+>SA211_MHAAABBN_02301
+MQTFDGLDEFERAVGTHLGHSRWRTVTQEQVDLFADTTDDHQWIHVDPERAARGPFGSTV
+AHGFLTLALLPSMVREIYRVEGMAMVVNYGSDRVRFPHPTPVGARIRAGAELTRLDRGPQ
+GALAMVTTTVEIEGVAKPACVSDSLFLLRPGKDAS
+>TT9_LFPAFLNI_00285
+MQTFDGLDEFERAVGTHLGHSRWRTVTQEQVDLFADTTDDHQWIHVDPERAARGPFGSTV
+AHGFLTLALLPSMVREIYRVEGMAMVVNYGSDRVRFPHPTPVGARIRAGAELTRLDRGPQ
+GALAMVTTTVEIEGVAKPACVSDSLFLLRPGKDAS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002367.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002367.fa
new file mode 100644
index 0000000000000000000000000000000000000000..211cbeab5f9379effb8ec050c33397fc7ead171a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002367.fa
@@ -0,0 +1,16 @@
+>SA211_MHAAABBN_02303
+MPEAVIVSAVRSPIGRARKGSLRDLRADDMAAQMVTAALDRVPELDRAEVEDLILGCGAP
+GGEQGGNLGRVVAVLAGLPSVPGTTITRFCSSSLQSTRMAFHAIRAGEGDVFVSAGVESA
+SRLDRGASDEDTRNPAFRSAWERSARRAEGDAPVWTDPAEEGELPDVYIAMGQTAENVAQ
+LRGVSRQAQDEYAVRSQQLTEKSQASGFWDREISPLVLPDGIRVTRDDSPRAGTTLEAVS
+QLNPVFRPDGTVTAGNACPLNDGAAALVVMSDTRAAELGLTPLARIVSTGLSALSPEIMG
+LGPVEASRQALARAGMSIDDVDLVEINEAFAAQVLPSAEDLGIPLDKLNVNGGAIALGHP
+WGMTGARITATLLNSLREHDKHIGLETMCVGGGQGMAMVIERLS
+>TT9_LFPAFLNI_00287
+MPEAVIVSAVRSPIGRARKGSLRDLRADDMAAQMVTAALDRVPELDRAEVEDLILGCGAP
+GGEQGGNLGRVVAVLAGLPSVPGTTITRFCSSSLQSTRMAFHAIRAGEGDVFVSAGVESA
+SRLDRGASDEDTRNPAFRSAWERSARRAEGDAPVWTDPAEEGELPDVYIAMGQTAENVAQ
+LRGVSRQAQDEYAVRSQQLTEKSQASGFWDREISPLVLPDGIRVTRDDSPRAGTTLEAVS
+QLNPVFRPDGTVTAGNACPLNDGAAALVVMSDTRAAELGLTPLARIVSTGLSALSPEIMG
+LGPVEASRQALARAGMSIDDVDLVEINEAFAAQVLPSAEDLGIPLDKLNVNGGAIALGHP
+WGMTGARITATLLNSLREHDKHIGLETMCVGGGQGMAMVIERLS
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002369.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002369.fa
new file mode 100644
index 0000000000000000000000000000000000000000..96266945b9f448b5e7614d0f4db715042c31e3ff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/MultipleSequenceAlignments/OG0002369.fa
@@ -0,0 +1,20 @@
+>SA211_MHAAABBN_02312
+MMAVEAQRSRLVVLVAEAFAIQREFKTFLGKPRRGDKALRPVYEAETSKVHQRMAWACEA
+LHEGTVATASPLCDRPTGPRSLGEAANPVPVVAGIIGDMKYSESETAAYLKSTILRDFSA
+PLSTEPRKDKGTYYSRRVGCYEAPVPVLLRYPFDLLGIQHTGPGEKFAWAVEFNYKGFPA
+YLGYHKFGVKAGIICSLSRAESENHLNMMLDRIFSAAHVVEKLLSERAPEAIRQGNVTVA
+NQYRRLRAPYEYHRDRAINPVFVADEREHRRFNGGQSWTHISGKMVMKMHASHDLVASTV
+AFLSLLEHLFVLSLPFAGYNPESEDLTAFIGDRWGVKWERIIGDKNPEARDLRRRMSEVV
+EQWRNPYSHGGFEKGHGSSLYVHTPGLGALPMGLTRVRESTFFSFNPAPKGDIESIYSLF
+DEIESYLKSILPGAYTWIESGLDVRFDSEFAQELAEASQIDGGVEKLVDQYICRQEMIDN
+MDYY
+>TT9_LFPAFLNI_00296
+MMAVEAQRSRLVVLVAEAFAIQREFKTFLGKPRRGDKALRPVYEAETSKVHQRMAWACEA
+LHEGTVATASPLCDRPTGPRSLGEAANPVPVVAGIIGDMKYSESETAAYLKSTILRDFSA
+PLSTEPRKDKGTYYSRRVGCYEAPVPVLLRYPFDLLGIQHTGPGEKFAWAVEFNYKGFPA
+YLGYHKFGVKAGIICSLSRAESENHLNMMLDRIFSAAHVVEKLLSERAPEAIRQGNVTVA
+NQYRRLRAPYEYHRDRAINPVFVADEREHRRFNGGQSWTHISGKMVMKMHASHDLVASTV
+AFLSLLEHLFVLSLPFAGYNPESEDLTAFIGDRWGVKWERIIGDKNPEARDLRRRMSEVV
+EQWRNPYSHGGFEKGHGSSLYVHTPGLGALPMGLTRVRESTFFSFNPAPKGDIESIYSLF
+DEIESYLKSILPGAYTWIESGLDVRFDSEFAQELAEASQIDGGVEKLVDQYICRQEMIDN
+MDYY
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/AS2.tsv b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/AS2.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..39a8127aadd2da9784264ae253a1d1a9eff702b4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/AS2.tsv
@@ -0,0 +1 @@
+Orthogroup	AS2	Other
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/KBS0714.tsv b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/KBS0714.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..e30460d02ce96d1a3b6674805ed2849ee8881c02
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/KBS0714.tsv
@@ -0,0 +1 @@
+Orthogroup	KBS0714	Other
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/KD337.tsv b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/KD337.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..f60054995ee31750826403caab65186f75b319fa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/KD337.tsv
@@ -0,0 +1 @@
+Orthogroup	KD337	Other
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/SA211.tsv b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/SA211.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..2f9270d8fe525df816d9f761b1e797aeb56b58dd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/SA211.tsv
@@ -0,0 +1 @@
+Orthogroup	SA211	Other
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/TT9.tsv b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/TT9.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..0a7b637327389891fa37cf4e0034fe3697a21b71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Putative_Xenologs/TT9.tsv
@@ -0,0 +1 @@
+Orthogroup	TT9	Other
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000341.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000341.fa
new file mode 100644
index 0000000000000000000000000000000000000000..9fa4bcd55d8843b6cd9567475775858073de9694
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000341.fa
@@ -0,0 +1,20 @@
+>ACLBLIBL_00316
+MSARDRIRLTGLSAVGHHGVFDHERRDGQPFVTDVVLHLNAGPAAAGDDLARTANYAEVA
+DTVVRLVTGEPVDLIETLAERIARAVLAEQPVVEAVEVTVHKPQAPIPHDFADAAVTVHR
+TRRDAS
+>MOLHKGIG_00077
+MSARDRIRLAGLSAVGHHGVFDHERRDGQPFVTDVVLHLDAGPAAAGDDLARTANYAEVA
+DTVVRLVTGEPVDLIETLADRIARAVLAEQPVVTAVEVTVHKPQAPIPHDFADAAVTVHR
+TREDLA
+>NAFOICDF_00257
+MSDVIRLTGLTATGRHGVFEHERRDGQPFTTDVALTLDAGPAAARDDLARTANYAEVAET
+VVRLVTGEPFDLIETLAVRIAEAVLAEQPVVTAVEVTVHKPQAPIPHDFTDVSVTVARRR
+GA
+>MHAAABBN_02090
+MSARDRIRLAGLSAVGHHGVFDHERRDGQPFVTDVVLHLDAGPAAADDDLARTANYAEVA
+DTVVRLVTGEPVDLIETLADRIARAVLAEQPVVAAVEVTVHKPQAPIPHDFADAAVTVHR
+TREDLA
+>LFPAFLNI_00071
+MSARDRIRLAGLSAVGHHGVFDHERRDGQPFVTDVVLHLDAGPAAAGDDLARTANYAEVA
+DTVVRLVTGEPVDLIETLADRIARTVLAEQPVVAAVEVTVHKPQAPIPHDFADAAVTVHR
+TREDLA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000421.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000421.fa
new file mode 100644
index 0000000000000000000000000000000000000000..682ce2c402021c18d62474e9438a5e2fb3d4f866
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000421.fa
@@ -0,0 +1,55 @@
+>ACLBLIBL_00462
+MGGGSTGVGAAFDAATRGLDVGIVEARDWASGTSSRSSRLMHGGLRYLEMLDVKLVYEAL
+RERDLLLTQTAPHLVRPLRFVFPFFHKVIDRGFIGAGVTMYDAMQSLGRRRAMSAHRHLS
+RRSMAATFPSLDDEKIVGAVEYADAQFDDARLAMMLVRSAVDHGAVAANYTAVTGYLRGD
+DGRVQGVRVREETSGEEFDVHARAVILAGGVWTQEQQELAEADGGLEVLASKGAHITVPR
+DRIRADAATGVITKTEKSVLFLIPWDEYWVIGTTDTPWAEDVAHPAATADDIDYILEHAN
+AVLKEDLTRDDVIATYAGLRPLLQPVTGSDGGSTKISREHTVTEVAPGLTAVAGGKWTTY
+RAMAEDVVDFVVRETHPTRPSLTERIPVLGGLGYSEIEAEADRIAADYGLDEARVDRLLF
+RYGTVLRHVLDLIDADPSLSVPLAEAPRYLRAEIVHAARAEGVVHLDDVIERRTRLSTEV
+RDRGVAAAEEIASLVAPELGWDEERIAGEIRAYKSLVAARLRGETAHDDVTAAAALAAAD
+AASTH
+>MOLHKGIG_02268
+MPTLRTVPLSAATREDHLARLRATSPEAPLDILVVGGGSTGVGAAFDAATRGLDVGIVEA
+RDWASGTSSRSSRLMHGGLRYLEMLDVKLVYEALRERDLLLTQTAPHLVRPLRFVFPFFH
+KVIDRGFIGAGVTMYDAMQSLGRRRAMGAHRHLSRRSMAATFPSLDDEKIVGAVEYADAQ
+FDDARLAMMLVRSAVDHGAVAANYTAVTGYLRGDDGRVQGVRVREETSGEEFDVHARAVI
+LAGGVWTQEQQELAGADGGLEVLASKGAHITVPRDRIRADAATGVITKTEKSVLFLIPWD
+EYWVIGTTDTPWAEDVAHPATTADDIDYILEHANAVLKEDLTRDDVVATYAGLRPLLQPV
+TGSDGGSTKISREHTVTEVAPGLTAVAGGKWTTYRAMAEDVVDFVVRETHPTRPSLTERI
+PVLGGLGYSEIEAEADRIAADYGLDEARVDRLLFRYGTVLRHVLDLIDADPSLSVPLAEA
+PRYLRAEIVYAARAEGVVHLDDVIERRTRLSTEVRDRGVAAAEEIASLVAPELGWDEERI
+AGEIRAYKNLVAARLRGETAHDDVTAAAALAAADADAAPTP
+>NAFOICDF_00493
+MPTLRTVELSPATRADHLARLRAADADHPLDVLVVGGGSAGVGAAFDAATRGLDVGIVDA
+GDWAGGTSSRSSRLMHGGLRYLEMLDVKLVYEALRERDLLLTRTAPHVVRPLRFVFPLEH
+ARDRGWIGAGVGVYDAMQSVGRRRAVGGHRHLGRKALAETFPGLDPEAAVGAVEYADAQF
+DDARLALLLVRSAVDLGAAALNHAPVVGYLKDGAGAVVGARVRESLTGEELQVHARAVIL
+AGGVWTQEQQELAGVDGGLEVLASKGVHVTVPRERIAAEPGVGVITRTEKSVLFVIPSDE
+HWIIGTTDTPWRQDVDHPAATAADVDYVLEHANAVLSEDLTRADVVAVYAGLRPLLQPAA
+GADDASTKVSREHTVTELAPGLTAVAGGKWTTYRAMAEDTVDFAVRDLFPTRPSLTAHTP
+VLGGLGYAEIAARAAEIAAERGFDAARVDRLLRRYGTLLPHVLALVDADPALGEPLPGGE
+AYLRAEVVYAARAEGAVHLDDVLERRLRLSTEVPDRGADAASEAAALVADVLGWDAARRD
+AEVAAYRALVAARRRAEGLDDDAAAAAELAAAGERAGVVPVTSRETVTPEEKGGAR
+>MHAAABBN_01961
+MPTLRTVSLSAATREDHLARLRATSPEAPLDILIVGGGSTGVGAAFDAATRGLDVGIVEA
+RDWASGTSSRSSRLMHGGLRYLEMLDVKLVYEALRERDLLLTQTAPHLVRPLRFVFPFFH
+KVIDRGFIGAGVTMYDAMQSLGRRRAMGAHRHLSRRSMAATFPSLDDEKIVGAVEYADAQ
+FDDARLAMMLVRSAVDHGAVAANYTAVTGYLRGDDGRVQGVRVREETSGEEFDVHARAVI
+LAGGVWTQEQQELAGADGGLEVLASKGAHITVPRDRIRADAATGVITKTEKSVLFLIPWD
+EYWVIGTTDTPWAEDVAHPATTADDIDYILEHANAVLKEDLTRDDVIATYAGLRPLLQPV
+TGSDGGSTKISREHTVTEVAPGLTAVAGGKWTTYRAMAEDVVDFVVRETHPTRPSLTEHI
+PVLGGLGYSEIEAEADRIAADYGLDEARVDRLLFRYGTVLRHVLDLIDGDPSLSVPLAEA
+PRYLRAEIVYAARAEGVVHLDDVIERRTRLSTEVRDRGVAAAEEIASLVAPELGWDEERI
+AGEIRAYKNLVAARLRGETAHDDVTAAAALAAADAAPVHGKEPVHGHDLPA
+>LFPAFLNI_02200
+MPTLRTVSLSAATREDHLARLRATSPEAPLDILIVGGGSTGVGAAFDAATRGLDVGIVEA
+RDWASGTSSRSSRLMHGGLRYLEMLDVKLVYEALRERDLLLTQTAPHLVRPLRFVFPFFH
+KVIDRGFIGAGVTMYDAMQSLGRRRAMGAHRHLSRRSMAATFPSLDDEKIVGAVEYADAQ
+FDDARLAMMLVRSAVDHGAVAANYTAVTGYLRGDDGRVQGVRVREETSGEEFDVHARAVI
+LAGGVWTQEQQELAEADGGLEVLASKGAHITVPRDRIRADAATGVITKTEKSVLFLIPWD
+EYWVIGTTDTPWAEDVAHPATTADDIDYILEHANAVLKEDLTRDDVVATYAGLRPLLQPV
+TGSDGGSTKISREHTVTEVAPGLTAVAGGKWTTYRAMAEDVVDFVVRETHPTRPSLTEHI
+PVLGGLGYSEIEAEADRIAADYGLDEARVDRLLFRYGTVLRHVLDLIDADPSLSVPLAEA
+PRYLRAEIVYAARAEGVVHLDDVIERRTRLSTEVRDRGVAAAEEIASLVAPELGWDEERI
+ADEIRAYKNLVAARLRGETAHDDVTAAAALAAADAAPTP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000639.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000639.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2081bfa6a7c09adfcde78ce1cc6c9586e42ca630
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000639.fa
@@ -0,0 +1,15 @@
+>ACLBLIBL_00975
+MNTLAQKALSTGITLVGGIIGSRVVAGGWKLVTGHDAPDDAADETLPIVEALSFAFISAG
+VAAILKVAGQRGAGAALRKVTESTAHRVDNEV
+>MOLHKGIG_01883
+MNTLAQKALSAGITLVGGIVGSRVVAGGWRLVTGHSAPNDAADETLPLIEALSFAFISAG
+VAALLKVAGQRGAGAAIRKVSESTAHRVDHEV
+>NAFOICDF_00913
+MDKVIQKVLATGITVVGGIVASRLVAGGWKLVTGHDAPSDATDETVPLVEALAFTFASAG
+IASVLKVAGQRAAAEGVRKVAQKTSSDVDNEV
+>MHAAABBN_01579
+MNTLVQKALSAGITLVGGIVGSRVVAGGWRLVTGHSAPDDAADETLPLVEALSFAFISAG
+VAALLKVAGQRGAGAAIRKVSESTAHRVDHEV
+>LFPAFLNI_01803
+MNTLAQKALSAGITLVGGIVGSRVVAGGWRLVTGHSAPNDAADETLPLIEALSFAFISAG
+VAALLKVAGQRGAGAAIRKVSESTAHRVDHEV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000763.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000763.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2ee2399e52a825fc17a4e331d1d0f858cfba5027
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000763.fa
@@ -0,0 +1,105 @@
+>ACLBLIBL_01150
+MVASSTSNETATVSPRSGASAGRISFAKISEPLDVPDLLALQTESFDRLIGNERWVARVE
+EAQAADDHSVPVTSGLTDIFEEISPIEDFQGTMSLSFSEPEFADAKMTEEECKDRDATYA
+APLYVKAEFMNNTTGEIKQQTVFMGDFPLMTRNGTFIINGTERVVVSQLVRSPGAYFERT
+PDKTSDKEIFSAKIIPSRGAWFELEVDKRDQVGVRLDRKRKQPVTVLLKAMGWTESRILE
+EFGHYDSIRATLEKDGTADQDEALLDIYRKLRPGEPAAVDAAQMLLNNLYFTPKRYDLAK
+VGRYKLNRKLGVDVHLGDPNASVLTEDDIVQMVHFIAALHAGEKTVKGVRDGEAVDVRVE
+IDDIDHFGNRRIRAVGELIENQIRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
+IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
+ETPEGPNIGLIGSLATFGRINSFGFIETPYRRVVDGRVTDTVDYLTADDELAYQIAQANA
+PVAEDGTFEEELVLCRQRGGDGEPVLSTVDEIDYMDVSPRQMVSAATALIPFLEHDDANR
+ALMGANMQRQAVPLLRSEAPYVGTGMEKYVAVDAGDSVTATAAGVVTEVAADLVTVMNDD
+GTTTHYPIMKFARSNQGNAYNQRVLVSEGDRVEPLSVIADGPATDNGELALGKNLLVAFM
+PWEGLNYEDAIILSQRMVSEDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEEVLSQL
+DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
+GTVIGVRIFDRDEDDDLPPGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPLEDM
+PFLADGTPVDIVLNPLGVPGRMNLGQVMELHLGWAASRGWDIQGEPEWIKDLPNFPRQSD
+PVNVATPVFDGAEAYEITGLLGHVNATRDGDRLMGENGKAQLFDGRTGEPFPDPVSVGYM
+YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEL
+LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSADGQTIEMR
+DAEDEVYRAAEELGIDLSHAEPSSVEEV
+>MOLHKGIG_01728
+MVASSTSNETATVSPRSGASAGRVSFAKISEPLDVPDLLALQTESFDRLIGNERWAARVD
+AALAADDHSVPVTSGLTDIFEEISPIEDFQGTMSLSFAEPEFADAKMTEEECKDRDATFS
+APLYVKAEFMNNTTGEIKQQTVFMGDFPLMTRNGTFIINGTERVVVSQLVRSPGAYFERT
+PDKTSDKEIFSAKIIPSRGAWFELEVDKRDQVGVRLDRKRKQPVTVLLKAMGWTESRILE
+EFGHYDSIRATLEKDGTADQDEALLDIYRKLRPGEPAAVDAAQTLLNNLYFTPKRYDLAK
+VGRYKLNRKLGVDVHLGDPNASVLTEDDIVQMVHFIAALHAGETVIKGTRDGEPVDVRVE
+IDDIDHFGNRRIRAVGELIENQIRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
+IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
+ETPEGPNIGLIGSLATFGRINSFGFIETPYRRVVDGRVTDTVDYLTADDELAFQIAQANA
+PVDEDGRFEEEFVLCRQRGGDGEPVLSTVDEIDYMDVSPRQMVSAATALIPFLEHDDANR
+ALMGANMQRQAVPLLRSEAPYVGTGMEKYVAVDAGDSVTATQGGVVTEVAADLVTVMNDD
+GTTTHYPIMKFARSNQGNAYNQRVRVSEGERVEPLSIIADGPATDNGELALGKNLLVAFM
+PWEGLNYEDAIILSQRMVSEDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEEVLSQL
+DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
+GTVIGVRIFDRDEDDDLPPGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPLEDM
+PFLADGTPVDIVLNPLGVPGRMNLGQVMELHLGWAASRGWDIQGEPEWIKDLPNFPRQSG
+PVNVATPVFDGAEAYEITGLLGHVNVTRDGDRLMSDSGKAQLFDGRTGEPFPDPVSVGYM
+YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEL
+LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSADGQAIEMR
+DAEDEVYRAAEELGIDLSHAEPSSVEEV
+>NAFOICDF_01079
+MVASSTSNETAAVSPRSAASAGRISFAKIHEPLDVPDLLALQTESFDRLIGNERWAARVD
+AAVAADDHSVSVTSGLTDIFEEISPIEDFQGTMSLSFSDPEFADAKMTEEECKDRDATFA
+APLYVKAEFMNNTTGEIKQQTVFMGDFPLMTRNGTFIINGTERVVVSQLVRSPGAYFERT
+PDKTSDKEIFSARIIPSRGAWFELEVDKRDQVGVRLDRKRKQPVTVLLKALGWTESRILE
+EFGQYDSIRATLEKDGTADQNEALLDIYRKLRPGEPAAVDAAQNLLNNLYFTAKRYDLAK
+VGRYKLNRKLGVDVHLGDPNASVLTEDDIVQMVHFIAALHAGEKTIKGARDGEPVEVRVE
+VDDIDHFGNRRIRAVGELIENQIRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
+IKEFFGTSQLSQFMDQNNPLAGLTHKRRLNALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
+ETPEGPNIGLIGSLATFGRINPFGFIETPYRRVVDGRVTDQLDYLTADDELAFQIAQANA
+PVDEDGRFVEELVLCRQRGGGGEPVLSTVDDIDYMDVSPRQMVSAATALIPFLEHDDANR
+ALMGANMQRQAVPLLQSEAPYVGTGMEKYVAVDAGDSVTAAQPGVVTEVAADLVTVMNDD
+GSTTHYPIMKFSRSNQGNAYNQRVRVSEGDRVERLSIIADGPATDNGELALGKNLLVAFM
+PWEGLNYEDAIILSQRMVSDDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEEVLSQL
+DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
+GTVIGVRIFDRDEDDDLPPGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPLEDM
+PFLADGTPVDVVLNPLGVPGRMNLGQVMEIHLGWAASRGWDIEGEPEWIKDLPDFPRQSG
+PVNVATPVFDGAEAYEITGLLGHVNKTRDGDRLMGTTGKAQLFDGRSGEPFPDPVSVGYM
+YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEL
+LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSADGQTIEMR
+DAEDETYRAAEELGIDLSHAEPSSVEEV
+>MHAAABBN_01435
+MVASSTSNETATVSPRSGASAGRVSFAKISEPLDVPDLLALQTESFDRLIGNERWAARVD
+AALAADDHSVPVTSGLTDIFEEISPIEDFQGTMSLSFAEPEFADAKMTEEECKDRDATFS
+APLYVKAEFMNNTTGEIKQQTVFMGDFPLMTRNGTFIINGTERVVVSQLVRSPGAYFERT
+PDKTSDKEIFSAKIIPSRGAWFELEVDKRDQVGVRLDRKRKQPVTVLLKAMGWTESRILE
+EFGHYDSIRATLEKDGTADQDEALLDIYRKLRPGEPAAVDAAQTLLNNLYFTPKRYDLAK
+VGRYKLNRKLGVDVHLGDPNASVLTEDDIVQMVHFIAALHAGETVIKGTRDGEPVDVRVE
+IDDIDHFGNRRIRAVGELIENQIRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
+IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
+ETPEGPNIGLIGSLATFGRINSFGFIETPYRRVVDGRVTDTVDYLTADDELAFQIAQANA
+PVDEDGRFEEEFVLCRQRGGDGEPVLSTVDEIDYMDVSPRQMVSAATALIPFLEHDDANR
+ALMGANMQRQAVPLLRSEAPYVGTGMEKYVAVDAGDSVTATQGGVVTEVAADLVTVMNDD
+GTTTHYPIMKFARSNQGNAYNQRVRVSEGERVEPLSIIADGPATDNGELALGKNLLVAFM
+PWEGLNYEDAIILSQRMVSEDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEEVLSQL
+DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
+GTVIGVRIFDRDEDDDLPPGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPLEDM
+PFLADGTPVDIVLNPLGVPGRMNLGQVMELHLGWAASRGWDIQGEPEWIKDLPNFPRQSG
+PVNVATPVFDGAEAYEITGLLGHVNVTRDGDRLMSDSGKAQLFDGRTGEPFPDPVSVGYM
+YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEL
+LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSADGQAIEMR
+DAEDEVYRAAEELGIDLSHAEPSSVEEV
+>LFPAFLNI_01657
+MVASSTSNETATVSPRSGASAGRVSFAKISEPLDVPDLLALQTESFDRLIGNERWAARVD
+AALAADDHSVPVTSGLTDIFEEISPIEDFQGTMSLSFAEPEFADAKMTEEECKDRDATFS
+APLYVKAEFMNNTTGEIKQQTVFMGDFPLMTRNGTFIINGTERVVVSQLVRSPGAYFERT
+PDKTSDKEIFSAKIIPSRGAWFELEVDKRDQVGVRLDRKRKQPVTVLLKAMGWTESRILE
+EFGHYDSIRATLEKDGTADQDEALLDIYRKLRPGEPAAVDAAQTLLNNLYFTPKRYDLAK
+VGRYKLNRKLGVDVHLGDPNASVLTEDDIVQMVHFIAALHAGETVIKGTRDGEPVDVRVE
+IDDIDHFGNRRIRAVGELIENQIRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
+IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
+ETPEGPNIGLIGSLATFGRINSFGFIETPYRRVVDGRVTDTVDYLTADDELAFQIAQANA
+PVDEDGRFEEEFVLCRQRGGDGEPVLSTVDEIDYMDVSPRQMVSAATALIPFLEHDDANR
+ALMGANMQRQAVPLLRSEAPYVGTGMEKYVAVDAGDSVTATQGGVVTEVAADLVTVMNDD
+GTTTHYPIMKFARSNQGNAYNQRVRVSEGERVEPLSIIADGPATDNGELALGKNLLVAFM
+PWEGLNYEDAIILSQRMVSEDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEEVLSQL
+DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
+GTVIGVRIFDRDEDDDLPPGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPLEDM
+PFLADGTPVDIVLNPLGVPGRMNLGQVMELHLGWAASRGWDIQGEPEWIKDLPNFPRQSG
+PVNVATPVFDGAEAYEITGLLGHVNVTRDGDRLMSDSGKAQLFDGRTGEPFPDPVSVGYM
+YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEL
+LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSADGQAIEMR
+DAEDEVYRAAEELGIDLSHAEPSSVEEV
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000848.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000848.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c3b35de4de5f1133c9b5efcb892d64a0e1483d98
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0000848.fa
@@ -0,0 +1,15 @@
+>ACLBLIBL_01260
+MSEQQQEQTGAPVEGFTSADTSDVAGMSYEQARAELVETVTRLEAGGGRLEESLALWERG
+EALAARCQAWLDGARARLDEVRGAADSPTA
+>MOLHKGIG_01635
+MSEQGMEQTQDAGRPSGVEGFTSADVSDVARMSYEQARAELVETVGRLEAGGAGLEESLA
+LWERGEALADRCQAWLDGARARLDQVRGEAAPDAD
+>NAFOICDF_01169
+MSEQEQQGTAVGGFTSADTSDVARMSYEQARAELVEVVGQLEAGGAGLEESLALWERGEA
+LADRCQAWLDGARARLDQVRGEAAPDAD
+>MHAAABBN_01340
+MSEQGMEQTQDPGRPSGVEGFTSADVSDVARMSYEQARAELMETVGRLEAGGAGLEESLA
+LWERGEALADRCQAWLDGARARLDQVRGEAAPDVD
+>LFPAFLNI_01564
+MSEQGMEQTQDAGRPSGVEGFTSADVSDVARMSYEQARAELVETVGRLEAGGAGLEESLA
+LWERGEALADRCQAWLDGARARLDQVRGEAAPDAD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001022.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001022.fa
new file mode 100644
index 0000000000000000000000000000000000000000..ad8c272345db0d062308c31a69758e498a9ec3bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001022.fa
@@ -0,0 +1,57 @@
+>ACLBLIBL_01533
+MTDRPAFSSPRGGSTVGPAPGLPDARIRGLLLLVLVLLGGLALRLVYVQGVDPTGQAAAA
+MDKRLTHQETLPERGSILDRDGDVLASSVRRYDMVVDQRLVKDFNEWDREARKTVLVDVD
+SRLASLAEVLELPEEQVREATIGSRPYNVVKRSVTPEMRDAAMALKVPGLLAEPVDRRVY
+PNGSVAGSIVGFMGGDGTPLEGLELSQDDVMTGTPGTRTFEVGADGIRIPNAPLEEVPAV
+DGADLRLTLDKDAQWFAQETMGALAAEHDAEWANAVVLDAKTGDVLVMADSTTVDPADPE
+GTEPYFRSSTVMSTPYEPGSTGKALPIAAALDAGAVTATDGYTVPSSQEFDGQTIRDFAP
+HETYDMTVAGIFARSYNTGTVQVAEEISDELRYEYMRSFGVGKPIDLGLPRTAGGVLVPP
+GEWDGRQRLTTAFGQGYTQTTLHTAQMYQAMANGGVMEPARLIDATVDGDGAEKRWEPAA
+EPHRVVSEATAADMLRMMETVVTQGTSKAAAIPGYRVGGKSSTAEAASDTGRYDGYNFGF
+TAVAPLDDPRFVVSVSMHRPPSQLGSRAVTSAAAQIMEHMLRQADVPADGAAPQDYDVFV
+DDPQDRPW
+>MOLHKGIG_01360
+MRTRILLLLVFVLLGGLALRLVYVQGIDPTGQAAAAMDQRLTHQETLPQRGSILDRDGDV
+LAASVRRYDIVVDQRLVKDFNEWDREARETVLVDVDSRLASLAEVLGMSEEEVREATIGS
+RPYAVVRRSVTPEVRDAAMALNVPGLLSEAVDRRTYPNGSVAGSIIGFMGGDGTALEGLE
+LSQDDVMTGTPGTRTFEVGADGIRIPNAPLEEVPAVDGADLRLTVDKDAQWFAQETLGAL
+AAEYEAEWANAVVMDVKTGDVIVMADSTTVDPADPDATEGNFRTSTVMSTPYEPGSTGKA
+LPIAAAVDAGKVTATDGFTVPGSQDFDGQTIRDFSPHPTFDMTVAGIYARSYNTGTVQIA
+EKITDEQRYEYMRSFGVGQPIDLGLPQQAGSVLVPPEQWDGRQRLTTAFGQGYTQTTLHT
+AQMYQALANGGVLIPARLIDATVDGDGAEKRWESSAEPHRVVSEETAAQMLRMMETVVTQ
+GTSKAAAIPGYRVGGKSSTAEAASDTGTYDGYNLGFTAVAPLDDPRFVVSVSMHRPPSKQ
+GSRDVSVAAATIMEYMLRQADVPATGAEPNDYRVFVDDPQDRPW
+>NAFOICDF_01428
+MPVSRSRVSGAGSRTAPPIGTARVRSRTVLLLLLALVTVLGLRLVWVQGIDASGAAATAM
+SERLKTQEIRPERGAITDRDGAVLASTVRRYDIVVDQRLVKDFKEWDAEKRQSVLVSIDS
+RLSSLAEALGMSEDEVRAAAIGDRPWAVLKRSVTPEVRDRVLALKVPGVLADAVDRRTYP
+SGAVAGSLVGFMSSDGTPLEGLEKSQDAVLSGTPGTRTFEVGATGIRIPNAPEDVTPAVD
+GATLRLTLDKDAQWYAQEAMARLADTYSAQWANAVVMDAKTGEVLALADSATVDPGDPQA
+ADARARTPGVVYTPYEPGSTGKTATMAAALDMGLVTPETGLEVPDRLELKGQPPIRDASP
+HETYTMTVAGVYARSYNTGTVMVAEKMSDEQRYEYMRSFGIGRPIDLGLPQPARSVLAAP
+GDWDGRQRLVTAFGQGYTVTTLHTAQMFQAIANGGVLEPARLIAATVGADGTEHRWDPGV
+ASRRVVSEQTAEEMLRMMETVVTQGTSTVAQLPGYRVGGKSSTAQVAGETGTYDGYNYGF
+TAVAPLDDPRYVVSVSMNRPSAGGSSKVVAAAAADVMQHMLRQGGVPPGGAEPDDYRVFV
+DDPQERPW
+>MHAAABBN_01080
+MRTRILLLLVLVLLGGLALRLVYVQGIDPTGQAAAAMDQRLTHQETLPQRGSILDRDGDV
+LAASVRRYDIVVDQRLVKDFNEWDREARETVLVDVDSRLASLAEVLGMSEEEVREATIGS
+RPYAVVRRSVTPEVRDAAMALNVPGLLSEAVDRRTYPNGSVAGSIIGFMGGDGTALEGLE
+LSQDDVMTGTPGTRTFEVGADGIRIPNAPLEEVPAVDGADLRLTVDKDAQWFAQETLGAL
+AAEYDAEWANAVVMDVKTGDVIVMADSTTVDPADPDATEGNFRTSTVMSTPYEPGSTGKA
+LPIAAAVDAGKVTATDGFTVPSSQDFDGQTIKDFSPHPTFDMTVAGIYARSYNTGTVQIA
+EKITDEQRYEYMRSFGVGQPIDLGLPQQAGSVLVPPEKWDGRQRLTTAFGQGYTQTTLHT
+AQMYQALANGGVLIPARLIDATVDGEGAEKRWESSAEPHRVVSEETAAQMLRMMETVVTQ
+GTSKAAAIPGYRVGGKSSTAEAASDTGTYDGYNFGFTAVAPLDDPRFVVSVSMHRPPSKQ
+GSRDVSVAAATIMEYMLRQADVPATGAEPNDYRVFVDDPQDRPW
+>LFPAFLNI_01315
+MRTRILLLLVFVLLGGLALRLVYVQGIDPTGQAAAAMDQRLTHQETLPQRGSILDRDGDV
+LAASVRRYDIVVDQRLVKDFNEWDREARETVLVDVDSRLASLAEVLGMSEEEVREATIGS
+RPYAVVRRSVTPEVRDAAMALNVPGLLSEAVDRRTYPNGSVAGSIIGFMGGDGTALEGLE
+LSQDDVMTGTPGTRTFEVGADGIRIPNAPLEEVPAVDGADLRLTVDKDAQWFAQETLGAL
+AAEYEAEWANAVVMDVKTGDVIVMADSTTVDPADPDATEGNFRTSTVMSTPYEPGSTGKA
+LPIAAAVDAGKVTATDGFTVPGSQDFDGQTIRDFSPHPTFDMTVAGIYARSYNTGTVQIA
+EKITDEQRYEYMRSFGVGQPIDLGLPQQAGSVLVPPEQWDGRQRLTTAFGQGYTQTTLHT
+AQMYQALANGGVLIPARLIDATVDGDGAEKRWESSAEPHRVVSEETAAQMLRMMETVVTQ
+GTSKAAAIPGYRVGGKSSTAEAASDTGTYDGYNLGFTAVAPLDDPRFVVSVSLHRPPSKQ
+GSRDVSVAAATIMEYMLRQADVPATGAEPNDYRVFVDDPQDRPW
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001096.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001096.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f7163dcb3bea56bf2b77cfc80d7c576b4c55fa70
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001096.fa
@@ -0,0 +1,20 @@
+>ACLBLIBL_01616
+MPVATAATLPVIAQQAQGGGGSMLMLIAFAMLAVMLFLSFRKGKKVQQQQAEMRSTLAPG
+VEVMTGAGIFGTVVSVDAENQRVTIETAPGTRMDVHLQGVTNVVEPTAAAAATPADDEAR
+LDRAPGAEYGAQQPVVEPRADDAVDPRDRRGDLA
+>MOLHKGIG_01271
+MPVATAATLPVIAQQAQGGGGSLLMLIAFALLAVMLFLSFRKGKKMQQQQAQMRSTLAPG
+VEVMTGAGIFGTVVAVDTEGQRVTLETAPGTRMDVHLQGVTTVVEPETTAAPTTDPSRLD
+DAPGTEYRADDADDPRPRRDDLA
+>NAFOICDF_01511
+MPLTPLAPVLADDAAGGGNVLVLAMFAALAVMLFLSFRRGKKAQAEAADMRARLTPGQEV
+MTGAGIFGRVVAVDAAAQRVTLETAPGTRMDVHLQGIVKIEEPDVAPAADTAPAVGGAHA
+AETAPAADDTDRA
+>MHAAABBN_00990
+MPVATAATLPVIAQQAQGGGGSLLMLIAFALLAVMLFLSFRKGKKMQQQQAQMRSTLAPG
+VEVMTGAGIFGTVVAVDTEGQRVTLETAPGTRMDVHLQGVTTVVEPETAAAPTTDPSRLD
+DAPGTEYRADDADDPRPRRDDLA
+>LFPAFLNI_01229
+MPVATAATLPVIAQQAQGGGGSLLMLIAFALLAVMLFLSFRKGKKMQQQQAQMRSTLAPG
+VEVMTGAGIFGTVVAVDTEGQRVTLETAPGTRMDVHLQGVTTVVEPETAAAPTTDPSRLD
+DAPGTEYRADDADDPRPRRDDLA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001143.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001143.fa
new file mode 100644
index 0000000000000000000000000000000000000000..5072ca1a61b07095b7b65555a2e7338e38701d19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001143.fa
@@ -0,0 +1,35 @@
+>ACLBLIBL_01668
+MTEQPRRLQVLQAIVEEYVARREPVGSKALVERHALGVSSATVRNDMAALEEEGLIVAPH
+TSAGRVPTDKGYRVFVDRLSEVKPLSPAERRAVRTLLDPSTDTEHMMETTVRLLAQLTQQ
+VAVAQFPHEDGSTVRHLELVPLTPARVLVVLILSTGRVDQRHVVLETPLAEADLAVLRGL
+LLEAVLGLGPAQAAAVVDAAVARMRPEDREAAALVAGAVHALLEAGRQDRIVMAGTANLA
+RSTGDFGASIGPILEALEEQVVLLRLLTEMEHDAHGVSVRIGSENAGSLADTSVVAAAYG
+PGAVAKVGVVGPTRMDYPGTMAAVRAIARYLSRILTT
+>MOLHKGIG_01220
+MSEQPRRLQVLQAIVEDYVALREPVGSKALVERHALGVSSATVRNDMAALEEEGLIVAPH
+TSAGRVPTDKGYRVFVDRLSEVKPLSPAERRAVRTLLDPETDTEHMMESTVRLLAQLTQQ
+VAVAQFPYEDGSTIRHLELVSLTPTRVLVVLILSTGRVDQRHAVLDRPVDEAELSVLRGL
+LLDALLGLGPVQAATVVDDVVTRVRPEHRQSAALVAAAVQDLLEAGREDRIVLAGTANLA
+RSPGDFGASIGPILEALEEQVVLLRLLTEMEQDAHGVSVRIGSENAGSLADTSVVAAAYG
+PGAVAKLGVIGPTRMDYPGTMAAVRAIARYLSRILTT
+>NAFOICDF_01565
+MTEQPRRLQVLQAIVEDYVSLREPVGSKALVERHALGVSSATVRNDMAALEEEGLIVAPH
+TSAGRVPTDKGYRVFVDRISEVKPLSAAERRAVRTLLDSEADTESMMEATVRLLAQLTRQ
+VAVVQFPHEDGSTVRHLDLVALTPERVLVVLILSTGRIEQRTVALARPVQDEDLAALRAV
+LLPVIEGLGPAQAAAVLDTPLEGLPPARRAAAVDVVGAVRGLLEAERQDRIVLAGTANLA
+RSTDDFHSSIGPILEALEEQVVLLRLLTEMGQDAHGVSVRIGAENGASLADTSVVAAAYG
+PGAVAKVGVIGPTRMDYPGTMAAVRAIARYLSRILTT
+>MHAAABBN_00939
+MSEQPRRLQVLQAIVEDYVALREPVGSKALVERHALGVSSATVRNDMAALEEEGLIVAPH
+TSAGRVPTDKGYRVFVDRLSEVKPLSPAERRAVRTLLDPETDTEHMMESTVRLLAQLTQQ
+VAVAQFPHEDGSTIRHLELVSLAPTRVLVVLILSTGRVDQRHAVLDRPVDEAELSVLRGL
+LLDALLGLGPVQAATVVDDVVTRVRPEHRQSAALVAAAVHDLLEAGRQDRIVLAGTANLA
+RSPGDFGASIGPILEALEEQVVLLRLLTEMEQDAHGVSVRIGSENAGSLADTSVVAAAYG
+PGAVAKVGVIGPTRMDYPGTMAAVRAIARYLSRILTT
+>LFPAFLNI_01178
+MSEQPRRLQVLQAIVEDYVALREPVGSKALVERHALGVSSATVRNDMAALEEEGLIVAPH
+TSAGRVPTDKGYRVFVDRLSEVKPLSPAERRAVRTLLDPETDTEHMMESTVRLLAQLTQQ
+VAVAQFPHEDGSTIRHLELVSLAPTRVLVVLILSTGRVDQRHAVLDRPVDEAELSVLRGL
+LLDALLGLGPVQAATVVDDVVTRVRPEHRQSAALVAAAVQDLLEAGREDRIVLAGTANLA
+RSPGDFGASIGPILEALEEQVVLLRLLTEMEQDAHGVSVRIGSENAGSLADTSVVAAAYG
+PGAVAKLGVIGPTRMDYPGTMAAVRAIARYLSRILTT
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001149.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001149.fa
new file mode 100644
index 0000000000000000000000000000000000000000..f85680e8e8d1a241776e1ecdf01fe0738f578f87
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001149.fa
@@ -0,0 +1,35 @@
+>ACLBLIBL_01674
+MTDLVDPARAADGHRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVH
+REDFQLVLVDTPGLHRPRTLLGQRLNDLVAETLGEVDAVGFCLPADEAIGPGDRFIAQQL
+AHLHRTPVVAVVTKTDKVGPEQLMAQLLAVTALGEEVLGPENGGEGFAAVVPVSAVAGRQ
+VDDVLEVLRGLLPEGPPLYPDGELTDEPEAVMIAELIREAALEGVRDELPHSVAVVVEEM
+ALREGRPDDRPLMDVWANLFVERDSQKGIIIGKGGSRLREIGARARAGIERMLGTKVHLD
+LRVKVAKEWQRDPKQLGRLGF
+>MOLHKGIG_01214
+MTDLVDPARAADGFRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVH
+REDFQLVLVDTPGLHRPRTLLGERLNDLVAETLNEVDAVGMCLPADEAIGPGDRFIAQQL
+SYLHRTPVVAVVTKTDKVGPEQLMAQLVAVTALGDEVLGPENGGEGFAAVVPVSAVAGRQ
+VDDVLGVFAGLLPAGPPLYPDGELTDEPEAVMVAELIREAALEGVRDELPHSVAVMVEEM
+SLREDRPADRPLMDVWANVFVERDSQKGIIIGKGGSRLREIGAQARAGIERMLGTKVHLD
+LRVKVAKEWQRDPKQLGRLGF
+>NAFOICDF_01571
+MTSLLDPAVPEGHRSGFACLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVHR
+PDFQLVLVDTPGLHRPRTLLGERLNALVQETLSEVDVVGFCLPADEKIGPGDRFIAQQLA
+ALRRTPVVAIVTKTDKTDPQRVAEQLLAVTALGDEVLGPENGGRGFAAVVPVSAVAGRQV
+EDVESVLAQLLPDGPPLYPDGELTDEPEAIMVAELIREAALEDVRDELPHSVAVVVEEMN
+PREGRPEERPLLDVYANVFVERDSQKGIIIGKGGSRLRAIGTQARTGIERMLGTPVHLDL
+RVKVAKDWQRDPKHLNRLGM
+>MHAAABBN_00933
+MTDLVDPARAADGFRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVH
+REDFQLVLVDTPGLHRPRTLLGERLNDLVAETLNEVDAVGMCLPADEAIGPGDRFIAQQL
+SYLHRTPVVAVVTKTDKVGPEQLMAQLVAVTALGDEVLGPENGGEGFAAVVPVSAVAGRQ
+VDDVLGVFAGLLPAGPPLYPDGELTDEPEAVMVAELIREAALEGVRDELPHSVAVVVEEM
+SLREDRPADRPLMDVWANVFVERDSQKGIIIGKGGSRLREIGAQARAGIERMLGTKVHLD
+LRVKVAKEWQRDPKQLGRLGF
+>LFPAFLNI_01171
+MTDLVDPARAADGFRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVH
+REDFQLVLVDTPGLHRPRTLLGERLNDLVAETLNEVDAVGMCLPADEAIGPGDRFIAQQL
+SYLHRTPVVAVVTKTDKVGPEQLMAQLVAVTALGDEVLGPENGGEGFAAVVPVSAVAGRQ
+VDDVLGVFAGLLPAGPPLYLDGELTDEPEAVMVAELIREAALEGVRDELPHSVAVVVEEM
+SLREDRPADRPLMDVWANVFVERDSQKGIIIGKGGSRLREIGAQARAGIERMLGTKVHLD
+LRVKVAKEWQRDPKQLGRLGF
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001192.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001192.fa
new file mode 100644
index 0000000000000000000000000000000000000000..666ab0ce88e2dbd34b7e4ff3b744f2fc438a2f22
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001192.fa
@@ -0,0 +1,15 @@
+>ACLBLIBL_01721
+MSSDARMALEALTTALNEHLVAAQNKRGEDDPAVEAAFFAVADAFEAYEDALYADTEEVT
+PLEVFDDEEDDEA
+>MOLHKGIG_01168
+MSSDARMALEALTTALNEHLVAAQNKRGEDDPAVEAAFFAVADAFEAYEDALYADTEEVT
+PLDLFDDEDDDD
+>NAFOICDF_01619
+MSSDARVALEALTSALNEHLVAAQNRRGEDDPAVEAAFFAVADAFDAYEEALYAETEEVT
+PLELFDDEDDLDEED
+>MHAAABBN_00887
+MSSDARMALEALTTALNEHLVAAQNKRGEDDPAVEAAFFAVADAFEAYEDALYADTEEVT
+PLDLFDDEDDDD
+>LFPAFLNI_01118
+MSSDARMALEALTTALNEHLVAAQNKRGEDDPAVEAAFFAVADAFEAYEDALYADTEEVT
+PLDLFDDEDDDD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001196.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001196.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d643c8b6e99611c435852cd3ea8e3bf0704ba53b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001196.fa
@@ -0,0 +1,31 @@
+>ACLBLIBL_01727
+MRTTELAAPPSLAGLYARAAGQAAKDALTRRSRPAVLPEREVVVTGHRIPRAAVAAWRDA
+VGPADPAALPSVLVHTQVFGAAMELMADPEFPLPLPGMVHLTNTVLHRRPVPAETALRVT
+ARAVGLVPHHAGTAVDVAVTVEGPHPAGGEAVLWEGVSRYLAKGVHLTGLRPERPAREEF
+TAPARTAEWRLGAGAGRRYADVSGDWNPIHLTGVSARLFGMKGAIAHGMLLAARMLQGRE
+PAAGGFRWEIEFDAPVVLPGTVAVRYEPADGQGTRVIGWDGRRCRRHFTGRIAPLAD
+>MOLHKGIG_01163
+MQTTQLSAPPSLGRLYVRAAGRAATDAVVRRRRPRELPDRQVVVTGHRIPAEAVTAWRGA
+VGSANPADLPSVLVHTQVFGAAMELMADPEFPLPLPGLVHLSNTVLHHRPVAAETALRVT
+ARAVGLVPHHAGTAVDVVVTVEGPGDDGEEALLWEGVSRYLAKGVHLSGLRPERPARPDF
+VPPTPTAQWRFGTGAGRRYAGVSGDWNPIHLTGVSARLFGMKGAIAHGMFLAARMLEGRE
+PAGAGFRWHIDFEAPVVLPTTVAVRYEPGPDGGTRVWGWDARRRRPHFSGEITPLEP
+>NAFOICDF_01624
+MHTRTESSMPALAGLYRRAAGQALADAARRRTRPAELPDERLVVEGHRIPERALRRWQAE
+IGPVDPASVPSVLVHTQVFGAAMALMAEPDFPLPLPGMVHLTNAVEHRRPVAAGEALDVT
+ARAVGLVPHHAGTAVDLQVAVREAGETDDAPAAWEGVSRYLARGVHLAPLRPERPERPEF
+TPPAPTAQWMFDGGAGRRYAEVSGDWNPIHLSALSARAFGQRRAIAHGMLLAARMLNRRE
+PRAAAFGEGFGWDVEFHAPVVLPARVAVRYEAAADGSTRVSAWDPRRGRPHLDGRIRHAR
+P
+>MHAAABBN_00882
+MQTTQLSAPPSLARLYARAARQAATDAVVRRRRPRELPDRQVVVTGHRIPAEAVSAWRGA
+VGSADPADLPSVLVHTQVFGAAMELMADPEFPLPLPGLVHLSNTVLHHRPVAAETPLRVT
+ARAVGLVPHHAGTAVDVVVTVEGPGDDGEEALLWEGVSRYLAKGVHLSGLRPERPARPDF
+VPPTPTAQWRFGTGAGRRYAGVSGDWNPIHLTGVSARLFGMKGAIAHGMFLAARMLEGRE
+PAGAGFRWHIDFEAPVVLPTTVAVRYEPGPDGGTRVWGWDARRRRPHFSGEITPLEP
+>LFPAFLNI_01113
+MQTTQLSAPPSLGRLYVRAAGRAATDAVVRRRRPRELPDRQVVVTGHRIPAEAVTAWRGA
+VGSADPADLPSVLVHTQVFGAAMELMADPEFPLPLPGLVHLSNTVLHHRPVPAETALRVT
+ARAVGLVPHHAGTAVDVVVTVEGPGDDGGEALLWEGVSRYLAKGVHLSGLRPERPARPDF
+VPPTPTAQWRFGTGAGRRYAGVSGDWNPIHLTGVSARLFGMKGAIAHGMFLAARMLEGRE
+PAGAGFRWHIDFEAPVVLPTTVAVRYEPGPDGGTRVYGWDARRRRPHFSGEITPLES
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001234.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001234.fa
new file mode 100644
index 0000000000000000000000000000000000000000..2d42317e1dcfcb98d1e8cb133b8fa5ba8fb5769d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001234.fa
@@ -0,0 +1,30 @@
+>ACLBLIBL_01773
+MSEESLRPEKPPTSEVLVITGMSGAGRTTAAHALEDHGWYVVENMPPPLFITLADLVARS
+PEAFPRLAIVVDVRSRAYFPELHAALQQLENNGVEYRMVFLEADEHVLVRRFEAGRRPHP
+LQGNASLLDGIRAERDMLAELKARADVVVDTTELNVHGLATEITELFSVSGPVTLRLTLM
+SFGFKYGVPADANFVADMRFIPNPHWVPALRPHTGTEAEVSDYVLTRPGVEDFLRSYTAM
+LAPVFEGYRRENKHYATLAIGCTGGKHRSVAVAEELARRLAQVPHVTVQVQHRDMGRE
+>MOLHKGIG_01120
+MTEETLQPEKPPTSEVLVIAGMSGAGRTTAAHALEDHGWDVVENMPPALFGTLAELIARS
+PEAFPRLAIVVDVRSRSYFEELYAALQHLANSGVEYRTVFLDAEDHVLLQRFEAGRRPHP
+MQGNARLLDGIRAERDVVEPLKARADVVVDTTELNVHGLATEITELFSESGPVTLRLTIM
+SFGFKYGVPADANFVADMRFIPNPHWVPALRPHTGTEAAVADYVLSRPGVEDFLRTYVAM
+LGPVFEGYRRENKHYATLAIGCTGGKHRSVAVAEELARRLAQVPHVTVHVQHRDMGRE
+>NAFOICDF_01666
+MSADEHLQPDKPPSSEVLVITGMSGAGRTTAAHALQDHGWYVVENMPPQLLGTLSDLVAR
+SPEAFPRLAIVVDVRSRSYFNELRTALQQLESTGVEFRTVFLEASDEVLVRRFEAGRRPH
+PLQGNARLLDGIQAEREILSELKERADIVVDTSALNVHGLATEVTQLFSEDGPVTVRLNV
+MSFGFKYGLPSDANFVADMRFVANPHWVPELRSKTGLDPEVSGFVLGQPGVQEFLSNYLA
+ALGPVVEGYRRENKHYATLAVGCTGGKHRSVAVAEELARRVAQWPRVSVHVDHRDVGRE
+>MHAAABBN_00839
+MTEETLQPEKPPTSEVLVIAGMSGAGRTTAAHALEDHGWDVVENMPPALFGTLAELIARS
+PEAFPRLAIVVDVRSRSYFEELYAALQHLANSGVEYRTVFLDAEDHVLLQRFEAGRRPHP
+MQGNARLLDGIRAERDVVEPLKARADVVVDTTELNVHGLATEITELFSESGPVTLRLTIM
+SFGFKYGVPADANFVADMRFIPNPHWVPALRPHTGTEAAVADYVLSRPGVEDFLRTYVAM
+LGPVFEGYRRENKHYATLAIGCTGGKHRSVAVAEELARRLAQVPHVTVHVQHRDMGRE
+>LFPAFLNI_01070
+MTEETLQPEKPPTSEVLVIAGMSGAGRTTAAHALEDHGWDVVENMPPALFGTLAELIARS
+PEAFPRLAIVVDVRSRSYFEELYAALQHLANSGVEYRTVFLDAEDHVLLQRFEAGRRPHP
+MQGNARLLDGIRAERDVVEPLKARADVVVDTTELNVHGLATEITELFSESGPVTLRLTIM
+SFGFKYGVPADANFVADMRFIPNPHWVPALRPHTGTEAAVADYVLSRPGVEDFLRTYVAM
+LGPVFEGYRRENKHYATLAIGCTGGKHRSVAVAEELARRLAQVPHVTVHVQHRDMGRE
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001324.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001324.fa
new file mode 100644
index 0000000000000000000000000000000000000000..e1c9346972f207aed64acb08c8ba351433580d47
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001324.fa
@@ -0,0 +1,48 @@
+>ACLBLIBL_01904
+MVLDVEGDRVDAVVAGLKELGLDPEPSVFRRSTIACTGLEFCKLAIVDTKDTATAAIAQL
+EERLADLADRLPERLSLHVNGCPNSCARIQTADIGLKGQLLPDDDGGQTPGFQIHLGGGL
+ASVDRAEAGLGRSVRGLKVRADGLVDYVERLVRRYDEQREPGETFARWAHRVDEEALR
+>MOLHKGIG_00985
+MTQVNETSRPARTPRRPSAKPHGQWKVDGTAPLNHNEEFKQQDDGLNVRERIEQVYAHEG
+FDSIPSDDLHGRFRWWGLYTQRRQGIDGGKTATLEPHELEDRYFMLRVRIDGGDLTTEQL
+RVIGGISTDFGRDTADITDRQNVQLHWIRVEDVPEIWRRLESVGLSTTEACGDVPRVILG
+SPVAGIAADEIIDPTPVIREIADRWIGDLEISNLPRKFKTAITGHPSQDVVHEINDVSLI
+GVVHPELGPGYDLWVGGGLSTKARLADRIGAFVSAERAPEVWHAVVSIFRDYGYRRLRNK
+ARMKYLLEDWGPERFRTVLEEEYLGYALPDGPAPAPPTRPGDHVGVHEQKDGRFYIGAAP
+VVGRSSGTTLTALADLLEAHGSTRLRTTPHQKIVVLDVERDRVDAVVAGLKELGLDPEPS
+VFRRSTIACTGLEFCKLAIVDTKDTATAAIAQLEERLADLADRLPERLSLHVNGCPNSCA
+RIQTADIGLKGQLLPDDDGGQTPGFQVHLGGGLASVDRAEAGLGRSVRGLKVRADGLVDY
+VERVVRRYDEQREPGETFARWAHRVDEEALR
+>NAFOICDF_01851
+MTQVNETSRPARTPRRPSAKPHGQWKVDGTAPLNHNEEFKQQDDGLNVRERIEQVYAREG
+FDSIPSDDLHGRFRWWGLYTQRKQGIDGGKTATLEPHELEDRYFMLRVRIDGGDLTTEQL
+RVIGGISTDFGRDTADITDRQNVQLHWIRVEDVPEIWRRLESVGLSTTEACGDVPRVILG
+SPVAGIAADEIIDPTPVIREIADRWIGDLEVSNLPRKFKTAITGHPSQDVVHEINDVSLI
+GVVHPELGPGYDLWVGGGLSTKARLADRIGAFVSAERAPEVWHAVVSIFRDYGYRRLRNK
+ARMKYLLEDWGPERFRTVLEEEYLGYALPDGPAPAPPTRPGDHVGVHEQKDGRFYIGAAP
+VVGRSSGTTLTALADLLEAHGSTRLRTTPHQKIVVLDVERDRVDAVVAGLKELGLDPEPS
+VFRRSTIACTGLEFCKLAIVDTKDTATAAIAQLEERLADLADRLPERLSLHVNGCPNSCA
+RIQTADIGLKGQLLPDDDGGQTPGFQVHLGGGLASVDRAEAGLGRSVRGLKVRADGLVDY
+VERLVRRYDEQREPGETFARWAHRVDEEALR
+>MHAAABBN_00699
+MTQVNETSRPARTPRRPSAKPHGQWKVDGTTPLNHNEEFKQQDDGLNVRERIEQVYAREG
+FDSIPSDDLHGRFRWWGLYTQRRQGIDGGKTATLEPHELEDRYFMLRVRIDGGDLTTEQL
+RVIGGISTDFGRDTADITDRQNVQLHWIRVEDVPEIWRRLESVGLSTTEACGDVPRVILG
+SPVAGIAADEIIDPTPVIREIADRWIGDLEVSNLPRKFKTAITGHPSQDVVHEINDVSLI
+GVVHPELGPGYDLWVGGGLSTKARLADRIGAFVSAERAPEVWHAVVSIFRDYGYRRLRNK
+ARMKYLLEDWGPERFRTVLEEEYLGYALPDGPAPAPPTRPGDHVGVHEQKDGRFYIGAAP
+VVGRSSGTTLTALADLLEAHGSTRLRTTPHQKIVVLDVERDRVDAVVAGLKELGLDPEPS
+VFRRSTIACTGLEFCKLAIVDTKDTATAAIAQLEERLADLADRLPERLSLHVNGCPNSCA
+RIQTADIGLKGQLLPDDDGGQTPGFQVHLGGGLASVDRAEAGLGRSVRGLKVRADGLVDY
+VERLVRRYDEQREPGETFARWAHRVDEEALR
+>LFPAFLNI_00928
+MTQVNETSRPARTPRRPSAKPHGQWKVDGTAPLNHNEEFKQQDDGLNVRERIEQVYAHEG
+FDSIPSDDLHGRFRWWGLYTQRRQGIDGGKTATLEPHELEDRYFMLRVRIDGGDLTTEQL
+RVIGGISTDFGRDTADITDRQNVQLHWIRVEDVPEIWRRLESVGLSTTEACGDVPRVILG
+SPVAGIAADEIIDPTPVIREIADRWIGDLEISNLPRKFKTAITGHPSQDVVHEINDVSLI
+GVVHPELGPGYDLWVGGGLSTKARLADRIGAFVSAERAPEVWHAVVSIFRDYGYRRLRNK
+ARMKYLLEDWGPERFRTVLEEEYLGYALPDGPAPAPPTRPGDHVGVHEQKDGRFYIGAAP
+VVGRSSGTTLTALADLLEAHGSTRLRTTPHQKIVVLDVERDRVDAVVAGLKELGLDPEPS
+VFRRSTIACTGLEFCKLAIVDTKDTATAAIAQLEERLADLADRLPERLSLHVNGCPNSCA
+RIQTADIGLKGQLLPDDDGGQTPGFQVHLGGGLASVDRAEAGLGRSVRGLKVRADGLVDY
+VERVVRRYDEQREPGETFARWAHRVDEEALR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001438.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001438.fa
new file mode 100644
index 0000000000000000000000000000000000000000..714a3882093c57886e1d7f91880b5640bdb46f80
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001438.fa
@@ -0,0 +1,25 @@
+>ACLBLIBL_02114
+MSGAATGVPEGARVVLATHNAGKVRELRQLLEGAVPGLDASVAVVDAGAVGAPDIVEDGV
+TFAQNALKKARAVAAHTGLIAVADDSGLAVDVLHGAPGIFSARWAGRHGDDRANLELLLA
+QLADVPDAHRGAEFVCAAALAVPSSADARGTHAIHVEHVEHGRLRGTLLRAPVGDGGFGY
+DPILRPDGRDESTAQLSAADKNAISHRGHAFRALLPYLVDALDARA
+>MOLHKGIG_00816
+MSAPASSSAGLPEGARVVLATHNAGKVRELRQLLAGAVPGLEVETAVVDAGAVGAPDVVE
+DGVTFAQNALKKARAVAAHTGLIAVADDSGLAVDVLHGAPGIFSARWAGRHGDDRANLEL
+LLAQLADVPDEHRGAQFVCAAALAVPSGPDAAGARAIHVEHVEHGRLPGTLLREPVGDGG
+FGYDPILRPEGRDVSTAQLSPEDKNAISHRGHAFRALLPYLVDALDARP
+>NAFOICDF_02005
+MSTPTAPVAPAGARVVLATHNAGKVRELRSLLAEALPALDVETAVVDAGAVGAPDVVEDG
+VTFEQNALKKARAVAAHTGLIAVADDSGLAVDVLGGAPGIFSARWAGRHGDDKANLELLL
+AQLGDVPDEHRGAAFVCAAALATPRGGDHVELGRMPGMLLREPVGDGGFGYDPILRPAGE
+DRSTAQLSSAEKNAISHRGQAFRALLPHLVAALSADS
+>MHAAABBN_00548
+MSAPASSSAGLPEGARVVLATHNAGKVRELRQLLAGAVPGLDVEAAVVDAGAVGAPDVVE
+DGVTFAQNALKKARAVAAHTGLIAVADDSGLAVDVLHGAPGIFSARWAGRHGDDRANLEL
+LLAQLADVPDEHRGAQFVCAAALAVPSGPDAAGARAIHVEHVEHGRLPGTLLREPVGDGG
+FGYDPILRPEGRDVSTAQLSPEDKNAISHRGHAFRALLPYLVDALDARP
+>LFPAFLNI_00785
+MSAPASSSAGLPEGARIVLATHNAGKVRELRQLLAGAVPGLDVEAAVVDAGAVGAPDVVE
+DGVTFAQNALKKARAVAAHTGLIAVADDSGLAVDVLHGAPGIFSARWAGRHGDDRANLEL
+LLAQLADVPDEHRGAQFVCAAALAVPSGPDAAGARAIHVEHVEHGRLPGTLLREPVGDGG
+FGYDPILRPEGRDVSTAQLSPEDKNAISHRGHAFRALLPYLVDALDARP
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001543.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001543.fa
new file mode 100644
index 0000000000000000000000000000000000000000..184b93090b01a3c91d5c50b6005c400ed287d764
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001543.fa
@@ -0,0 +1,55 @@
+>ACLBLIBL_02260
+MTPGTRLSTPPKLKKGTCRIVQLGGLEEVGRNMVTFEIDGKILIVDCGVLFPEEHQPGVD
+LILPDFDYIRDRMDDVVGIVLTHGHEDHIGAVPYLLRLRDDIPVIGSKLTLALIEAKLEE
+HRIKPRTRVVKEDEIVEFGPFECEFVAVNHSIPDALAVAIHTDAGTILHTGDFKMDQLPL
+DGRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTTEAEIGPTLERYFATAKRRIVVASF
+SSHVHRVQQVLDAAHKHGRKVAFGGRSMIRNMTIAAKLGYLNVPNGILVDIRKVDKYKDD
+EVVLMVTGSQGEPMAALSRMANGDHQVQLEEGDLVVLASSLIPGNENSVFRVINGLMKLG
+ANVVHKGMAKVHVSGHASEGELLYCYNIVEPEFVMPVHGETRHLIANGRIAEKTGVPAEN
+VILAGNGTVVDMTDGLVKVVGEVDCGYVYVDGSSVGEISDSDLKDRRVLGEEGFISIITV
+VNRQTGSIVSGPDIHARGVAEDEKVFEDIKPKIARALEEAVQSSKDHTAHQLQQVVRRTV
+GTWVNRKLRRRPMIIPVVLEA
+>MOLHKGIG_00694
+MTAGTRLSTPPKLKRGTCRIVQLGGLEEVGRNMVTFEIDGKILIVDCGVLFPEEHQPGVD
+LILPDFDYIRDRVDDVVGIVLTHGHEDHIGAVPYLLRLRDDIPVIGSKLTLALIEAKLEE
+HRIKPRTRVVKEDDIVEFGPFECEFVAVNHSIPDALAVAIHTDAGTILHTGDFKMDQLPL
+DGRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTTEAEIGPTLERYFATAKRRIVVASF
+SSHVHRVQQVLDAAHKHGRKVAFGGRSMIRNMTIAAKLGYLNVPNGILVDIRKVDKYRDD
+EIVLMVTGSQGEPMAALSRMANGDHQVQLEEGDLVVLASSLIPGNENSVFRVINGLMKLG
+ATVVHKGMAKVHVSGHASEGELLYCYNIVEPEFVMPVHGETRHLIANGRIAEKTGVPAEN
+VILAGNGTVVDMTDGLVKVVGEVECGYVYVDGSSVGEISDSDLKDRRVLGEEGFLSIITV
+VNRQTGAIVSGPDVHARGVAEDEKVFEEIKPKIVRALEEAVQSSKDHTAHQLQQVVRRTV
+GTWVNRKLRRRPMIIPVVLEA
+>NAFOICDF_00464
+MTRSSRNSSSRRRGGGQSRRPRSSGAPGQLAKGGLRITPLGGLGEIGRNMTVFEHQGKLL
+IVDCGVLFPEDHQPGIDVILPDFTSIRDRLQDVVGVVLTHGHEDHIGGVPYLLKERPDIP
+LIGSELTLAFIEAKLKEHKIVPKTHMVVAEDKRHMGPFELEFVAVNHSIPDALAVAIRTE
+AGLILHTGDFKMDQFPLDRRITDLRHFARLGEEGVDVFLTDSTNAEVPGFTISERELTPA
+IDHVFRTAPKRIIVSSFASHVHRIQQVLDAAHASGRKVAFVGRSMVRNMGIAGDLGYLKI
+PKGLVVDFKKLQDMPDEKIALISTGSQGEPMAALGRMANQTHQIKLNKGDTVLLASSVVP
+GNETSITGIINKFTDMGVNVVHKGNAKVHVSGHASAGELVYCYNIVQPRNVMPVHGEAAH
+LHANAELAKKTGLPEDRVFITKDGDVLDLVDGRVSVAGKVEAGLVYVDGDTIGKVTEGTL
+EERRTMQEAGVVTVVAIVDPDTNQLAEPLEFMTKGFIQDASVFKGAAEKVKSALSRSNVQ
+DIDDIEKLERVIGDAVTRHLERAYRRAPLVTVVVVDA
+>MHAAABBN_00431
+MTAGTRLSTPPKLKRGTCRIVQLGGLEEVGRNMVTFEIDGKILIVDCGVLFPEEHQPGVD
+LILPDFDYIRDRVDDVVGIVLTHGHEDHIGAVPYLLRLRDDIPVIGSKLTLALIEAKLEE
+HRIKPRTRVVKEDDIVEFGPFECEFVAVNHSIPDALAVAIHTDAGTILHTGDFKMDQLPL
+DGRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTTEAEIGPTLERYFATAKRRIVVASF
+SSHVHRVQQVLDAAHKHGRKVAFGGRSMIRNMTIAAKLGYLNVPNGILVDIRKVDKYRDD
+EIVLMVTGSQGEPMAALSRMANGDHQVQLEEGDLVVLASSLIPGNENSVFRVINGLMKLG
+ATVVHKGMAKVHVSGHASEGELLYCYNIVEPEFVMPVHGETRHLIANGRIAEKTGVPAEN
+VILAGNGTVVDMTDGLVKVVGEVECGYVYVDGSSVGEISDSDLKDRRVLGEEGFISIITV
+VNRQTGAIVSGPDVHARGVAEDEKVFEEIKPKIVRALEEAVQSSKDHTAHQLQQVVRRTV
+GTWVNRKLRRRPMIIPVVLEA
+>LFPAFLNI_00664
+MTAGTRLSTPPKLKRGTCRIVQLGGLEEVGRNMVTFEIDGKILIVDCGVLFPEEHQPGVD
+LILPDFDYIRDRVDDVVGIVLTHGHEDHIGAVPYLLRLRDDIPVIGSKLTLALIEAKLEE
+HRITPRTRVVKEDDIVEFGPFECEFVAVNHSIPDALAVAIHTDAGTILHTGDFKMDQLPL
+DGRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTTEAEIGPTLERYFATAKRRIVVASF
+SSHVHRVQQVLDAAHKHGRKVAFGGRSMIRNMTIAAKLGYLNVPNGILVDIRKVDKYRDD
+EIVLMVTGSQGEPMAALSRMANGDHQVQLEEGDLVVLASSLIPGNENSVFRVINGLMKLG
+ATVVHKGMAKVHVSGHASEGELLYCYNIVEPEFVMPVHGETRHLIANGRIAEKTGVPAEN
+VILAGNGTVVDMTDGLVKVVGEVECGYVYVDGSSVGEISDSDLKDRRVLGEEGFLSIITV
+VNRQTGTIVSGPDVHARGVAEDEKVFEEIKPKIVRALEEAVQSSKDHTAHQLQQVVRRTA
+GTWVNRKLRRRPMIIPVVLEA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001556.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001556.fa
new file mode 100644
index 0000000000000000000000000000000000000000..12215eabd51fe5435010253c65a88efba87e0c79
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001556.fa
@@ -0,0 +1,20 @@
+>ACLBLIBL_02283
+MADPARAGRLAQRIKVLVAEALRRSVKDDRVEAVTVTEVRVTNDLQHATVYYTVLGDEAT
+AAAAHEGIQENRGVLRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRAAKERDAELA
+KAREGATYAGEADPYRTSEPGSEADDAPRA
+>MOLHKGIG_00680
+MADPARAGRLAQRIKVLVAEALRRGVKDDRVEPVTVTEVRVTNDLQHATVYYTVLGDEAT
+VAAAHEGIQDNRGILRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRAAKERDAELA
+KAREGASYAGDADPYRTAEPDADADDAPRA
+>NAFOICDF_02144
+MADPARAGRLAQRIKVLVAEALRRAVKDERVEPVTVTEVRVTNDLQHATVYYTVLGDEAV
+VAAAQEAIQENRGVLRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRAAKERDAELA
+KAREGAQYAGDADPYRTSGDDDEQD
+>MHAAABBN_00417
+MADPARAGRLAQRIKVLVAEALRRGVKDDRVEPVTVTEVRVTNDLQHATVYYTVLGDEAT
+VAAAHEGIQDNRGILRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRAAKERDAELA
+KAREGASYAGDADPYRTAEPDADADDAPRA
+>LFPAFLNI_00650
+MADPARAGRLAQRIKVLVAEALRRGVKDDRVEPVTVTEVRVTNDLQHATVYYTVLGDEAT
+VAAAHEGIQDNRGILRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRAAKERDAELA
+KAREGASYAGDADPYRSAEPDADADDAPRA
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001583.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001583.fa
new file mode 100644
index 0000000000000000000000000000000000000000..c7b9b9abd5654efd4d206f91bd614c3de47acc9e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001583.fa
@@ -0,0 +1,36 @@
+>ACLBLIBL_02321
+MDTTRLDDDLRAMLAEVESDRRGEPSDYLEDVAGQHVDGLAAAVCTVDGHQAAAGETDHA
+FALQSVSKALTYAVVLQEVGLDAVLERVGVEPSGEAFNHLSLHDDGRPYNPLINAGAIMA
+HALLPAGDHEERVALLVRRYSALAGAELEVSQDVLDAELTRADRNLGLAHLLADAGQLPV
+SAREAVAGYLAQCSVTVTAPQLAVMGATLAAGGTNPVTGERVLDEWVAQQTMSVMLTCGM
+YDATGQWVAEVGVPAKSGVSGALLGAVPGALGIATWSPRLDERGNSRRGIGIFEGLSARW
+DLHVLQHRGALRGLRASR
+>MOLHKGIG_00641
+MDTTRFDDDLRAMLGEVESDRRGEPSDYLEDVAGQHVDGLAVAVCTVDGHQAAAGETEHA
+FALQSVSKALTYAVVLQEIGLDHVLEDVGVEPSGESFNHLSLHDDGRPCNPLINAGAILV
+HSLLPAGDEDERTALLLRRYSALAGVELEVCEDVLDAERTRADRNLGLAHLLADAGRLPI
+SAREAVAGYLAQCSVLVTAPQLAVMGATLAAGGTNPVTGERVLDEWVAQQTMSVMLTCGM
+YDASGQWVAEVGVPAKSGVSGALLGAVPGALGLAAWSPRLDEQGNSRRGIGLFEGLSARW
+DLHVLQHRGALRGLSGPR
+>NAFOICDF_02184
+MGIGSLIATMLPSSIAFLPACTGMVIGWRWLGLPLGPNARSSAHRDRPGARPRPGRPSTT
+VTGMDTTRFDDDLRAMLGEVESDRRGEPSDYLEDVAGQHVDGLAVAVCTVDGHQAAAGET
+EHAFALQSVSKALTYAVVLQEIGLDHVLEDVGVEPSGESFNHLSLHDDGRPCNPLINAGA
+ILVHSLLPAGDEDERTALLLRRYSALAGVELEVCEDVLDAERTRADRNLGLAHLLADAGR
+LPISAREAVAGYLAQCSVLVTAPQLAVMGATLAAGGTNPVTGERVLDEWVAQQTMSVMLT
+CGMYDASGQWVAEVGVPAKSGVSGALLGAVPGALGLAAWSPRLDEQGNSRRGIGLFEGLS
+SRWDLHVLQHRGALRGLSGPR
+>MHAAABBN_00378
+MDTTRFDDDLRAMLDEVESDRRGEPSDYLEDVAGQHVDGLAVAVCTVDGHQAAAGETEHA
+FALQSVSKALTYAVVLQEIGLDHVLEDVGVEPSGESFNHLSLHDDGRPCNPLINAGAILV
+HSLLPAGDEDERTALLLRRYSALAGVELEVCEDVLDAERTRADRNLGLAHLLADAGRLPI
+SAREAVAGYLAQCSVLVTAPQLAVMGATLAAGGTNPVTGERVLDEWVAQQAMSVMLTCGM
+YDASGQWVAEVGVPAKSGVSGALLGAVPGALGLATWSPRLDEQGNSRRGIGLFEGLSARW
+DLHVLQHRGALRGLSGPR
+>LFPAFLNI_00611
+MDTTRFDDDLRAMLDEVESDRRGEPSDYREDVAGQHVDGLAAAVCTVDGHQAAAGETEHA
+FALQSVSKALTYAVVLQEIGLDHVLEDVGVEPSGESFNHLSLHDDGRPCNPLINAGAILV
+HALLPAGDEDERTALLLRRYSALAGVELEVCEDVLDAERTRADRNLGLAHLLADAGRLPI
+SAREAVAGYLAQCSVLVTAPQLAVMGATLAAGGTNPVTGERVLDEWVAQQAMSVMLTCGM
+YDASGQWVAEVGVPAKSGVSGALLGAVPGALGIATWSPRLDEQGNSRRGIGLFEGLSARW
+DLHVLQHRGALRGLSGPR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001655.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001655.fa
new file mode 100644
index 0000000000000000000000000000000000000000..8eb116188ee3ba87c3b4e3ba5a38973d5ce84353
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001655.fa
@@ -0,0 +1,16 @@
+>ACLBLIBL_02465
+MRRCSKTGCQSPALATLTYNYADSQVVIGPLSRLAEPHTYDLCAEHARRTTAPRGWEVLR
+LELPGHYEAVAPDGTVHTVPTAPRAVPAAPPADVASRPSLAAPRPAPAVPPVDADEPEAP
+APPTRPGLRLVRDDDPLPPA
+>MOLHKGIG_00482
+MRRCSKTGCQSPALATLTYNYADSQVVIGPLSRRAEPHTYDLCGEHARRTTAPRGWEVLR
+LELPEHYEAVDADGGVRTVPTRPMAVPPARPGLRVVRDGD
+>NAFOICDF_02349
+MRRCSKTGCQEPAEATLTYNYAGSQVVIGPLAQRAEPHAYDLCAAHAARTTAPRGWEVLR
+LAPAAPAAPGVAAPTHPALRLVTDPVEGTAG
+>MHAAABBN_00200
+MRRCSKTGCQSPALATLTYNYADSQVVIGPLSRRAEPHTYDLCGEHARRTTAPRGWEVLR
+LELPEHYEAVDADGGVRTVPTRPMAVPPARPGLRVVRDGD
+>LFPAFLNI_00482
+MRRCSKTGCQSPALATLTYNYADSQVVIGPLSRRAEPHTYDLCGEHARRTTAPRGWEVLR
+LELPEHYEAVDADGGVRTVPTRPMAVPPARPGLRVVRDGD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001683.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001683.fa
new file mode 100644
index 0000000000000000000000000000000000000000..d83de0c3e9c427ca66fe881e1d16106d7582cca5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001683.fa
@@ -0,0 +1,30 @@
+>ACLBLIBL_02510
+MDRLVAVVEALRDHCPWTAALTHGDLAEYLVEEAYEAVAEIEARDAAAWADVPARRADGA
+YPALAAELGDVLFQVVLHAAVSRPPGAPVSSAGFRVADAADALTVKMIRRNPLVLTPEGA
+PRSAEELARVTPEAVELAWEEVKAQERAAAGETASGEAEQAGGPASDPGFGGIPARLPAL
+AAAAKVVDRAARQPADPLARHAPLSGDPDSGHRAGHAAPDDGDPGWGDEAALGAELFALV
+RRARAAGLDPERALRGTVARVRSGDWDALRPPTAG
+>MOLHKGIG_00447
+MDRLVAVVEALRDHCPWTAALTHADLAEYLVEEAYEAVAEIESRDAAAWADVPARRADGA
+YPALAAELGDVLFQVVLHAAVSRAPGAPAETAGFRVDDAADALTAKMIRRNPLVLTPEGG
+LRPAEELAAVTPEAVELAWERVKAQERAAAGLSPAAPAHDDGGTGPGLDVGDIPARLPAL
+AAAANVVDRAARQEPDPLAAHVPAPAAEAGERPAAGWPDEAALGAELFALVRRARAAGLD
+PERALRTTVARVRAGDWSALRPSG
+>NAFOICDF_02381
+MSDAVDRLVATTEALRTHCPWTRALTHRSLTQYLVEEAYEALAEIEARTDAEWADVPARR
+ADGSYPALAGEMGDVLFQVVLHAAVSRAPDAPAPAAGFRLDDAADALTAKLVRRNPLVFT
+PDGAVRPPAELEGITPEAVELAWERVKRAERAAAEGGGAPDGPTGAPRPDDVGLGGIPAH
+LPALAAASAVVDRAARQDVDPLAGHVPLPERTGEAWEDEAALGAELFETVRRARAAGLDP
+ERALRGAIACVRAGDWDALRR
+>MHAAABBN_00168
+MDRLVAVVEALRDHCPWTAALTHADLAEYLVEEAYEAVAEIESRDAAAWADVPARRADGA
+YPALAAELGDVLFQVVLHAAVSRAPGAPAETAGFRVDDAADALTAKMIRRNPLVLTPEGG
+LRPAEELAAVTPEAVELAWERVKAQERAAAGLSSAAPAHGDGGTGPGLDVGDIPARLPAL
+AAAAKVVDRAARQEPDPLAAHVPAPAAEAGERPAAVWPDEAALGAELFALVRRARAAGLD
+PERALRTTVARVRAGDWSALRPSG
+>LFPAFLNI_00450
+MDRLVAVVEALRDHCPWTAALTHADLAEYLVEEAYEAVAEIESRDAAAWADVPARRADGA
+YPALAAELGDVLFQVVLHAAVSRAPGAPAESAGFRLDDAADALTAKMIRRNPLVLTPEGG
+LRPAEELAAVTAEAVELAWERVKARERAAAGLSPAAPAHDDGGTGPGLDVGDIPARLPAL
+AAAAKVVDRAARQEPDPLAAHVPAPAAEAGERPAAGWPDEAALGAELFTLVRRARAAGLD
+PERALRATVARVRAGDWAALRPSG
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001684.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001684.fa
new file mode 100644
index 0000000000000000000000000000000000000000..7f28c0063da465b9de6ae22ef1d6a3ada2b215e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001684.fa
@@ -0,0 +1,40 @@
+>ACLBLIBL_02511
+MTATQLPDTASPSPLEVDLAALPKVSLHDHLDGGLRVGTVLELATEAGVDVPADTVEGLA
+EWIAEHANGESLEKYLQVFALTTAVMQTREQLRRVAREFVEDLVADGVVYGEIRWAPEQH
+LAGGLSLDEAVEAVQEGLDEAVDAAEAQGRLIRVGQLVTAMRHADRAQEIAELAVRHRER
+GVVGFDIAGAEAGFPPSRFAETFTWLAAHHLPVTVHAGEGDGLDSVRSALVDGRALRLGH
+GVRLAEDISVEFGGVDEDGEQLDELTGLVDLGETAAWVRDRQIALEVCPSSNLQTGAVDA
+EAGIAGHPIDLLVQLGFRVTVNTDNRLVSDVSLTDELYLLAETFGYSLAELLDLQLNAAE
+AAFLAVDEREDLAEILVAGWGEVISGDDAGPVLEELDEDDEDEDA
+>MOLHKGIG_00446
+MTTTQLPDTASPSPLEVDLAVLPKVSLHDHLDGGLRVGTVLDLAREAGVEVPADTVEGLA
+EWIAEHANGESLEKYLQVFALTTAVMQTREQLRRVAREFVEDLVADGVVYGEIRWAPEQH
+LAGGLSLDEAVEAVQAGLDEAVEADAAAGHAIRVGQLVTAMRHADRAQEIAELAVRHRAA
+GVVGFDIAGAEAGFPPSRFADTFTWLAAHHLPVTVHAGEGDGLDSVRSALVDGRALRLGH
+GVRLAEDISVEYGGVDEDGEQLDELTGLVDLGETAAWVRDRQIALEVCPSSNLQTGAVDA
+AAGIAGHPIDLLVQLGFRVTVNTDNRLVSDVSLTDELYLLAETFGYSLSELLDLQLNAAE
+AAFLSVDEREDLAEILVAGWGEVISGDAVGPVLEELDDEDEDD
+>NAFOICDF_02382
+MTISSQTPADAAPSPLTIDLGALPKVSLHDHLDGGLRVATVLELAREAGVEVPADTVDGL
+ADWFAEHANGESLEKYLETFALTTSVMQTHEQLRRVAREFVEDLVADGVVYGEIRWAPEQ
+HLASGLTLDEAVEAVQEGLDEAVDAADEAGHVIRVGQLVTAMRHADRAQEIAELAVRHRD
+RGVVGFDIAGAEIGFPPSRFADTFTWLAQQHLPVTVHAGEAEGLSSIQDALVSGRALRLG
+HGVRIADDIQVEFGGLDEDGVPVDADTGIVDLGETAAWVRDRQIALEICPSSNLQTGAVD
+AAAGIAGHPIDLLVQLGFRVTVNTDNRLVSNVSLTDELYLLAETFGYSLSELLDLQLNAA
+EAAFLAVDEREDLAEILVSGWGEVISGAGGTVALEELEADTDDEADA
+>MHAAABBN_00167
+MTTTQLPDTASPSPLEVDLAVLPKVSLHDHLDGGLRVGTVLDLAREAGVEVPADTVEGLA
+EWIAEHANGESLEKYLQVFALTTAVMQTREQLRRVAREFVEDLVADGVVYGEIRWAPEQH
+LAGGLSLDEAVEAVQAGLDEAVEAADAAGHVIRVGQLVTAMRHADRAQEIAELAVRHREA
+GVVGFDIAGAEAGFPPSRFADTFTWLAAHHLPVTVHAGEGDGLDSVRSALVDGRALRLGH
+GVRLAEDISVEYGGVDEDGEQLDELTGIVDLGETAAWVRDRQIALEVCPSSNLQTGAVDA
+AAGIAGHPIDLLVQLGFRVTVNTDNRLVSDVSLTDELYLLAETFGYSLSELLDLQLNAAE
+AAFLSVDEREDLAEILVAGWGEVISGDAVGPVLEELDDEDEDD
+>LFPAFLNI_00449
+MTTTQLPDTASPSPLEVDLAVLPKVSLHDHLDGGLRVGTVLDLAREAGVEVPADTVEGLA
+EWIAEHANGESLEKYLQVFALTTAVMQTREQLRRVAREFVEDLVADGVVYGEIRWAPEQH
+LAGGLTLDEAVEAVQAGLDEAVEAADAAGHVIRVGQLVTAMRHADRAQEIAELAVRHREA
+GVVGFDIAGAEAGFPPSRFADTFTWLAAHHLPVTVHAGEGDGLDSVRSALVDGRALRLGH
+GVRLAEDISVEYGGVDEDGEQLDELTGLVDLGETAAWVRDRQIALEVCPSSNLQTGAVDA
+AAGIAGHPIDLLVQLGFRVTVNTDNRLVSDVSLTDELYLLAETFGYSLSELLDLQLNAAE
+AAFLSVDEREDLAEILVAGWGEVISGDAVGPVLEELDDEDEDD
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001685.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001685.fa
new file mode 100644
index 0000000000000000000000000000000000000000..4086d1ce45d5809b6e96183126589fd18c8d5774
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001685.fa
@@ -0,0 +1,25 @@
+>ACLBLIBL_02512
+MLEWIEETVLHAAAQWWMLPLTLALCLLDGIVPVFPSESVIVALAAIVRDGQPFSLWALW
+AVGFAGAFLGDILAYAIGRAVGVDRFRWMRTPRVRASVAVARHHLNGHGALLLFTGRFIP
+GGRVAINLTAGAIRYPLHRFVVLDLLSTAAWSAYSIMIARLTTGWLDNALLQIAVSVTGA
+ALVGVLLDRALKAVLRRRLGTGVKGLRQAEDEALR
+>MOLHKGIG_00445
+MLAWLEGAILHASAQWWVLPLTLLLCLLDGIVPIFPSESVLVALGAIVRDGHPFSLWALW
+GVGFAGAFLGDVAAYAIGRAVGVERFRWMRLRRVRATVEVARHHLHSHGALLLFTARFIP
+GGRVALNFTAGATRYPPVRFVALDLLSTASWAAYSIMIARLTAGWLENPVLQIAVSVTGA
+ALVGLLLDRLLKALLRRRLGAGVKGLTLAEQEALR
+>NAFOICDF_02383
+MVQALEQAILAGASHPWALPLAALLCLLDGLVPVFPSESVLVALASIVEDGRPFPLAALW
+AAGFVGAFLGDVAAYGAGRGVGVTRFRWMRHGRVRRTIVMARRNLDSHGALLLFTARFIP
+GGRVAVNLAAGAMHYSPWRFVGLDLVSTALWSVYSIAIARLTVGWLDSTVLRMAVAVLGA
+ALVGLLLDRAVKALLRRRLARDGHRLGADEQAALR
+>MHAAABBN_00166
+MLAWLEGAILHASAQWWVLPLTLLLCLLDGIVPIFPSESVLVALGAIVRDGHPFSLWALW
+GVGFAGAFLGDVAAYAIGRAVGVERFRWMRLRRVRATVEVARHHLHSHGALLLFTARFIP
+GGRVALNLTAGATRYPPVRFVALDLLSTASWAAYSIMIARLTAGWLENPVLQIAVSVTGA
+ALVGLLLDRLLKALLRRRLGAGVKGLTLAEQEALR
+>LFPAFLNI_00448
+MLAWLEEAILHASAQWWVLPLTLLLCLLDGIVPIFPSESVLVALGAIVRDGHPFSLWALW
+GVGFAGAFLGDVAAYAIGRAVGVERFRWMRLRRVRATVEVARHHLHSHGALLLFTARFIP
+GGRVALNLTAGATRYPPVRFVALDLLSTASWAAYSIMIARLTAGWLENPVLQIAVSVTGA
+ALVGLLLDRLLKALLRRRLGSGVKGLTLAEQEALR
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001762.fa b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001762.fa
new file mode 100644
index 0000000000000000000000000000000000000000..80428720ceabf529a2d1ddc146f335226c06f2d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Single_Copy_Orthologue_Sequences/OG0001762.fa
@@ -0,0 +1,30 @@
+>ACLBLIBL_02628
+MKLATFRQPDSDAAYPGATFAAVITSVHPEDPEVAVRAVALPECRDVGEYLTAEPQEQRE
+MVESALRAAQEDRSLLLDTSTLVYDTLIPFPTKVFCVGLNYTNHIEETGQNQPEHPTLFA
+KFTQSLTGALDPVEVPEEDHLVDYEGELCIVIGEPGRRIAVEDAKEHIAGYAVANDVSMR
+GWQGRTSEWLQGKVWEASTPVGPWLVTPDELTADARIITRVNGVERQDDRIADVVFSPEE
+LVAYVSQMITLNPGDLIMTGTPAGVAVARKGADGRRPWLQAGDVVEVEITGLGRQRNELV
+>MOLHKGIG_00341
+MKLATFRQPDSDAAYPGATFAAVITSVHPEDPEVAVRAVALPDCRDVGEYLTATPEEQRE
+MVEGALRAAQADRSLLLDTSGLVYDTLVPFPTKVFCVGLNYTNHIDETGLERPEHPTLFA
+KFPQSLTGALDPIEVPEEDHRVDYEGELCIVVGEPGRRIAVEDAPEHIAGYAVANDISMR
+GFQGRTSEWLQGKVWEASTPVGPWLVTPDEFPADARVLTHVNGELRQEDRVADVVFSPAE
+LVSYASQLITLNPGDLILTGTPAGVALARRDAEGRRPWLRPDDVVEVEITGLGRQRNELV
+>NAFOICDF_02480
+MKLATFRQPDSDASYPGATFAAVLTSFHPQDPQVAVRAVALPECRDVGEFLTAEPQEQKD
+MVREALEAAKEDHGLLLDVSTLVYDTLVPFPTKVFCVGLNYADHIRETGQEKPEHPTLFA
+KFAQSLTGALDPIEVPEEDHRVDYEGELCVVIGEPGRRIAVEDAKDHIAGYAVANDVSMR
+GFQGRTPEWLQGKVWEASTPVGPWLVTADEFPKDARIVTRVNGEVRQDGKVKDVVFSPAE
+LVSYVSQLVTLNPGDLIMTGTPAGVAVARRDGDGRRPWLRADDVVEVEITGLGRQRNELV
+>MHAAABBN_00057
+MKLATFRQPDSDAAYPGATFAAVITSVHPEDPEVAVRAVALPDCRDVGEYLTATPEERRE
+MVEGALRAAQADRSLLLDTSGLVYDTLVPFPTKVFCVGLNYTNHIDETGLERPEHPTLFA
+KFAQSLTGALDPIEVPEEDHRVDYEGELCIVVGEPGRRIAVEDAPEHIAGYAVANDISMR
+GFQGRTSEWLQGKVWEASTPVGPWLVTPDEFSADARVLTHVNGELRQEDRVADVVFSPAE
+LVSYASQLVTLNPGDLILTGTPAGVALARRDAEGRRPWLRPDDVVEVEITGLGRQRNELV
+>LFPAFLNI_00348
+MKLATFRQPDSDAAYPGATFAAVITSVHPEDPEVAVRAVALPDCRDVGEYLTATPEEQRE
+MVEGALRAAQADRSLLLDTSGLVYDTLVPFPTKVFCVGLNYTNHIDETGLERPEHPTLFA
+KFPQSLTGALDPIEVPEEDHRVDYEGELCIVVGEPGRRIAVADAPEHIAGYAVANDISMR
+GFQGRTSEWLQGKVWEASTPVGPWLVTPDEFPADARVLTHVNGELRQEDRVADVVFSPAE
+LVSYASQLITLNPGDLILTGTPAGVALACRDAEGRRPWLRPDDVVEVEITGLGRQRNELV