diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000003_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000003_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2a757007fcaa6b50bbe1c6e8ca4c911487143203
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000003_tree.txt
@@ -0,0 +1 @@
+(((TT9_LFPAFLNI_00114:6e-09,(SA211_MHAAABBN_01116:5e-09,TT9_LFPAFLNI_01884:0.00642897):0.00642558):0.0064542,((((AS2_ACLBLIBL_01281:0,AS2_ACLBLIBL_01312:0):0.00752593,((AS2_ACLBLIBL_02347:6e-09,AS2_ACLBLIBL_02631:0.0150545):0.0150917,((KBS0714_MOLHKGIG_02280:0.135022,KD337_NAFOICDF_00317:0.0497284):0.0472623,AS2_ACLBLIBL_01304:5e-09):0.00757128):5e-09):0.00758893,KD337_NAFOICDF_00625:0.00745579):5e-09,(KBS0714_MOLHKGIG_01068:0.0149832,(AS2_ACLBLIBL_01317:0.0074632,(((SA211_MHAAABBN_00319:0,SA211_MHAAABBN_02267:0):0.00740272,SA211_MHAAABBN_00788:5e-09):0.00738558,SA211_MHAAABBN_01658:0.00646527):6e-09):0.0129634):0.00655117):0.00648215):2.5e-09,(AS2_ACLBLIBL_02614:0.00795341,(KBS0714_MOLHKGIG_01386:5e-09,((AS2_ACLBLIBL_00758:0,AS2_ACLBLIBL_02331:0,SA211_MHAAABBN_01327:0,TT9_LFPAFLNI_01539:0):5e-09,(KD337_NAFOICDF_01796:0,KD337_NAFOICDF_01836:0,KD337_NAFOICDF_02207:0):0.00738984):5e-09):5e-09):2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000006_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000006_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f3f7e52a67d90e7364946567a34dcd88f5493d82
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000006_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01213:0,(KBS0714_MOLHKGIG_00158:0,KBS0714_MOLHKGIG_01293:0,KBS0714_MOLHKGIG_02076:0,SA211_MHAAABBN_01016:0,SA211_MHAAABBN_01103:0,SA211_MHAAABBN_01115:0,SA211_MHAAABBN_02022:0,TT9_LFPAFLNI_00589:0,TT9_LFPAFLNI_00591:0,TT9_LFPAFLNI_01251:0,TT9_LFPAFLNI_01338:0,TT9_LFPAFLNI_01886:0,TT9_LFPAFLNI_02204:0,(SA211_MHAAABBN_01111:0.00916342,(KBS0714_MOLHKGIG_01033:0.00914985,KBS0714_MOLHKGIG_01383:5e-09):5e-09):5e-09):0);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000008_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000008_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5377b91597894159191298168c36d84adb8983db
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000008_tree.txt
@@ -0,0 +1 @@
+(((KBS0714_MOLHKGIG_00711:0,SA211_MHAAABBN_00092:0,SA211_MHAAABBN_00343:0,SA211_MHAAABBN_01013:0,SA211_MHAAABBN_01394:0,SA211_MHAAABBN_02284:0,TT9_LFPAFLNI_00606:0,TT9_LFPAFLNI_01349:0,TT9_LFPAFLNI_02164:0):5e-09,(KBS0714_MOLHKGIG_01398:0.0719037,(KBS0714_MOLHKGIG_01502:0.00443704,KBS0714_MOLHKGIG_02225:0.46793):0.00244087):0.0621436):2.5e-09,(KBS0714_MOLHKGIG_02227:0.026191,(TT9_LFPAFLNI_01016:0,TT9_LFPAFLNI_01158:0):0.00373267):2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000012_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000012_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a29d93db77f4ac26052e36057d9b9428ad9bee34
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000012_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02223:0,(KBS0714_MOLHKGIG_02063:0,(SA211_MHAAABBN_00297:0.255819,((AS2_ACLBLIBL_00722:0.139128,(SA211_MHAAABBN_00338:0,SA211_MHAAABBN_00345:0,SA211_MHAAABBN_00794:0):5e-09):0.00624325,(KBS0714_MOLHKGIG_01075:5e-09,(KBS0714_MOLHKGIG_00159:0.0218981,((AS2_ACLBLIBL_00720:0,TT9_LFPAFLNI_01024:0):0.014857,KBS0714_MOLHKGIG_00156:0.00157471):0.0310383):5e-09):0.00933472):0.240536):0.445762):0);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000013_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000013_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5137a71254c6207e62f9b9ea7a8d0efa3714b1a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000013_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01887:0.0140417,(TT9_LFPAFLNI_00898:0.0157493,(SA211_MHAAABBN_00341:0.124098,(TT9_LFPAFLNI_01544:0.406222,(AS2_ACLBLIBL_00706:0.38075,(SA211_MHAAABBN_01765:0.0218988,((AS2_ACLBLIBL_02276:0.00125225,AS2_ACLBLIBL_02636:0.0115439)0.83:0.012746,(AS2_ACLBLIBL_02496:0.211792,(AS2_ACLBLIBL_02495:0.00541976,AS2_ACLBLIBL_02615:5e-09)0.423:5e-09)0.325:0.00349261)0.914:0.0204545)0.943:0.16121)0.791:0.0906104)0.887:0.0616112)0.999:0.13763)1:0.0140417);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000015_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000015_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f2979f19b4f4009dee5b8664ebf3f2fc62884cb9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000015_tree.txt
@@ -0,0 +1 @@
+((((KBS0714_MOLHKGIG_01771:0,SA211_MHAAABBN_01478:0):0.00640386,TT9_LFPAFLNI_01700:0.00630266):0.00346542,(AS2_ACLBLIBL_01106:0.0334911,KD337_NAFOICDF_01032:0.109175):0.0194111):0.0112761,((SA211_MHAAABBN_00706:0.00583165,TT9_LFPAFLNI_00935:0.00254211):0.00401193,(AS2_ACLBLIBL_01897:0.0411368,(KBS0714_MOLHKGIG_00992:0.0145508,KD337_NAFOICDF_01844:0.0149575):0.00218125):0.00277314):0.0112761);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000016_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000016_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2cc8d202a1b0a0c97f467cde75b3542720de0cd4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000016_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_01149:0.0283035,(AS2_ACLBLIBL_01238:0.0173285,(KBS0714_MOLHKGIG_01656:0.00831215,(SA211_MHAAABBN_01361:0.00453286,TT9_LFPAFLNI_01586:0.0026178)0.46:0.0035327)0.911:0.00840392)0.278:0.0137265)1:0.239249,(KD337_NAFOICDF_02465:5e-09,(AS2_ACLBLIBL_02606:0.0125999,(KBS0714_MOLHKGIG_00355:0.00179295,(SA211_MHAAABBN_00071:0.00179101,TT9_LFPAFLNI_00362:5e-09)0.769:0.00178836)0.759:0.00257201)0.815:0.0229549)1:0.239249);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000020_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000020_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1c2aab5ee507c52d1d1659cab8b340b05b9b817d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000020_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00711:0.105881,((KBS0714_MOLHKGIG_01289:0,SA211_MHAAABBN_01008:0):0.00125694,TT9_LFPAFLNI_01247:0.00151652):0.0511899):0.256589,(KBS0714_MOLHKGIG_00633:5e-09,((AS2_ACLBLIBL_00405:0.00648903,KD337_NAFOICDF_02196:0.00124746):0.0103637,TT9_LFPAFLNI_00598:5e-09):0.00256113):0.256589);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000023_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000023_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5d53fb6609c95e676c274ba0b86f670a9fd44763
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000023_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02299:0.134402,((AS2_ACLBLIBL_01211:0.983098,(SA211_MHAAABBN_00245:0.0142266,(KBS0714_MOLHKGIG_00524:5e-09,TT9_LFPAFLNI_00524:0.0025367)0.688:0.0104101)1:0.458532)0.991:0.206805,(AS2_ACLBLIBL_02417:0.0949849,(SA211_MHAAABBN_00256:0.00354206,TT9_LFPAFLNI_00535:0.0173159)0.998:0.0813729)0.962:0.10826)1:0.134402);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000028_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000028_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8351f5f501025f66e5fe01a121a24b26bc19aafb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000028_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00186:0.106609,(KD337_NAFOICDF_00187:0.223121,KD337_NAFOICDF_02180:0.567515):0.153244):0.0404099,(AS2_ACLBLIBL_00251:0.0130743,((KBS0714_MOLHKGIG_00134:0,SA211_MHAAABBN_02148:0):5e-09,TT9_LFPAFLNI_00142:0.00199743):0.025709):0.0404099);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000029_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000029_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1106c9878e1dc1c3628c17eecfdf96aefb9cc4d6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000029_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00670:0,TT9_LFPAFLNI_02014:0):0.16136,(KD337_NAFOICDF_00617:0.327506,(AS2_ACLBLIBL_00292:0.0247015,(KBS0714_MOLHKGIG_00099:0,SA211_MHAAABBN_02112:0,TT9_LFPAFLNI_00094:0):5e-09):0.571752):0.16136);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000033_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000033_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7d11badb3d4e5bb86ef27f3a3f59e588d5c808bc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000033_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00451:1.08588,(AS2_ACLBLIBL_01253:0.820393,AS2_ACLBLIBL_01330:1.08256):0.273323):0.332923,(AS2_ACLBLIBL_00403:5e-09,(KD337_NAFOICDF_02198:0.0127555,(KBS0714_MOLHKGIG_00631:0,TT9_LFPAFLNI_00600:0):0.00776922):0.00959987):0.332923);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000034_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000034_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2c25b1c5e6e43cadd79e4fa35554e00fe33958a1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000034_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00412:0.00857074,(KD337_NAFOICDF_00648:0,KD337_NAFOICDF_02216:0):0.0171769):2.5e-09,(KD337_NAFOICDF_00325:0.0171188,(TT9_LFPAFLNI_01347:0.00853601,(KBS0714_MOLHKGIG_01397:5e-09,SA211_MHAAABBN_01130:0.00851276):5e-09):0.00859983):2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000035_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000035_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6850a86a33ecdeb7bfce2925ea5ecfc25e2827ca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000035_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_01401:0.111216,KD337_NAFOICDF_00326:0.0842186):0.00136351,((AS2_ACLBLIBL_00413:0.0251613,(SA211_MHAAABBN_01131:5e-09,TT9_LFPAFLNI_01351:0.0533726):0.00716629):0.00346679,(KD337_NAFOICDF_00649:0,KD337_NAFOICDF_02217:0):5e-09):0.00136351);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000036_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000036_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c1863ae37694a4c43f9e53c032faba72459081ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000036_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00434:0.00303817,(TT9_LFPAFLNI_02184:0.00403191,(AS2_ACLBLIBL_00488:0.0161824,((AS2_ACLBLIBL_00493:0.173863,KBS0714_MOLHKGIG_02275:0.289726)0.933:0.156978,(KBS0714_MOLHKGIG_02253:0.00712792,SA211_MHAAABBN_01952:0.003003)0.756:0.0018573)0.866:0.0061046)0.735:0.00199749)1:0.00303817);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000037_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000037_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..806c5f395a2037f9a5d484e3e7eb4f08e2ff4439
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000037_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00520:0.027572,((AS2_ACLBLIBL_00589:0.530802,AS2_ACLBLIBL_02580:1.52373):0.28795,(AS2_ACLBLIBL_00598:0.044012,((KBS0714_MOLHKGIG_02160:0,SA211_MHAAABBN_01873:0):0.00810445,TT9_LFPAFLNI_02104:5e-09):0.021444):0.0586633):0.027572);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000040_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000040_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a7f3008d78aaa103e539b1635f5ac75c88ea1a9e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000040_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01308:0.0105914,KD337_NAFOICDF_02237:0.0127592)0.981:0.12808,(KD337_NAFOICDF_00662:1.78369,(AS2_ACLBLIBL_00694:0.0183283,(SA211_MHAAABBN_01794:5e-09,(TT9_LFPAFLNI_02028:0.0207894,KBS0714_MOLHKGIG_02089:5e-09)0.599:0.0094745)0.829:0.0143074)0.785:0.0908522)0.981:0.12808);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000042_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000042_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..76a3066efbbcc2f2e37c08acc00c66f62919fd2a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000042_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00724:0,(KBS0714_MOLHKGIG_00161:0,KBS0714_MOLHKGIG_01073:0,SA211_MHAAABBN_00336:0,SA211_MHAAABBN_00347:0,(SA211_MHAAABBN_00792:0,TT9_LFPAFLNI_01022:0):0.0217507):0);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000043_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000043_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f079700e8f88b76ad510fa8aa77275c9bf03ce96
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000043_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00725:0.00160657,(SA211_MHAAABBN_00791:0.00321476,((KBS0714_MOLHKGIG_01072:0,SA211_MHAAABBN_00335:0,SA211_MHAAABBN_00348:0,TT9_LFPAFLNI_01021:0):5e-09,KBS0714_MOLHKGIG_00162:5e-09):5e-09):0.00160657);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000045_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000045_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..358a3a97e8aaf58234cb1632a4ce049fa62b608b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000045_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02256:0.642532,(AS2_ACLBLIBL_00822:1.33937,(SA211_MHAAABBN_00729:5e-09,(AS2_ACLBLIBL_01873:0.00543257,(TT9_LFPAFLNI_00959:0.00223951,(TT9_LFPAFLNI_00958:5e-09,KBS0714_MOLHKGIG_01015:5e-09)0.947:0.00361236)0.734:5e-09)0.662:0.00361666)0.934:0.386903)1:0.642532);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000047_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000047_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..25148598a23ab26d0521395794572c8f157a82fb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000047_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00792:0.0837695,(AS2_ACLBLIBL_00855:0.00608899,SA211_MHAAABBN_01696:0.014068)0.998:0.12276)0.993:0.115915,(TT9_LFPAFLNI_00735:0.225272,(KD337_NAFOICDF_00943:0.492286,(AS2_ACLBLIBL_01010:0.469041,KD337_NAFOICDF_00870:0.717775)0.826:0.105657)0.998:0.350528)0.993:0.115915);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000048_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000048_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..405b161a8d18df19fa3c8db4959fdd959487bce7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000048_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00743:0.372275,(AS2_ACLBLIBL_01085:5e-09,KBS0714_MOLHKGIG_01791:0.00684099)1:0.667738)0.946:0.0908827,(KD337_NAFOICDF_00733:0.256468,(SA211_MHAAABBN_01753:0.00821778,(KBS0714_MOLHKGIG_02047:0.00345393,TT9_LFPAFLNI_01981:5e-09)0.903:0.0197899)0.999:0.195327)0.946:0.0908827);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000049_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000049_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2f44a1235f9a84bad6e7f723d19a85b93235e39b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000049_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01023:0.0453106,((AS2_ACLBLIBL_01099:0.0624218,(KBS0714_MOLHKGIG_00836:0.127971,KBS0714_MOLHKGIG_00837:0.0590392)0.477:0.526808)0.869:0.0456872,(KBS0714_MOLHKGIG_01778:0.00213185,(SA211_MHAAABBN_01485:0.00975291,TT9_LFPAFLNI_01707:0.00414833)0.44:0.00347634)1:0.0624721)1:0.0453106);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000050_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000050_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c77589cb69354b2db416444e769b197730083333
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000050_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_00172:1.13416,KD337_NAFOICDF_02230:1.41504):0.207347,(KD337_NAFOICDF_01399:5e-09,(AS2_ACLBLIBL_01488:0.0190186,(KBS0714_MOLHKGIG_01408:0.00287843,(SA211_MHAAABBN_01138:0,TT9_LFPAFLNI_01358:0):5e-09):0.0203627):0.0619364):0.207347);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000054_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000054_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..97ecf216fedbb6c6c4049e5786aaee82e68556a4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000054_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_01240:0.199431,(KD337_NAFOICDF_01828:1.16549,(KD337_NAFOICDF_00714:1.59757,KD337_NAFOICDF_00643:0.664171)0.752:0.128768)0.996:0.427507)0.991:0.078349,(TT9_LFPAFLNI_01517:0.00179652,(KBS0714_MOLHKGIG_01590:0.010479,SA211_MHAAABBN_01302:5e-09)0.869:0.00660547)0.991:0.078349);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000056_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000056_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..728a96da1785d6778831086650a2fc8b79092edf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000056_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00015:0.0965629,KD337_NAFOICDF_00687:1.09006)0.703:0.0108903,(AS2_ACLBLIBL_00019:0.0617126,(SA211_MHAAABBN_00033:5e-09,(KBS0714_MOLHKGIG_00318:0.00802572,TT9_LFPAFLNI_00325:0.00404751)0.789:0.00797851)0.94:0.0325911)0.703:0.0108903);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000057_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000057_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4bb711dd7be9294781dfdb9d1130848f47aa5d52
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000057_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00027:0.24417,KD337_NAFOICDF_00023:0.194342)0.885:0.0365071,(KD337_NAFOICDF_00654:1.32246,(KBS0714_MOLHKGIG_00310:0.00291069,(SA211_MHAAABBN_00025:0.00559649,TT9_LFPAFLNI_00317:5e-09)0.878:0.0112438)0.931:0.103671)0.885:0.0365071);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000060_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000060_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b8ba0bb1b69b9988cf94f4aa22ef8244a38d6d73
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000060_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00046:0.0505111,(KBS0714_MOLHKGIG_01958:1.50018,(AS2_ACLBLIBL_00067:0.0350465,(KBS0714_MOLHKGIG_00287:0.00870315,(SA211_MHAAABBN_02309:0.00352282,TT9_LFPAFLNI_00293:0.00242894)0.939:0.00324163)1:0.0389738)0.741:0.0651844)1:0.0505111);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000061_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000061_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3dc149ae7d535f67aa4f95c84c861ceea04778e8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000061_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00057:0.26398,KD337_NAFOICDF_00450:1.72894)0.733:0.0354745,(AS2_ACLBLIBL_00071:0.0172183,(SA211_MHAAABBN_02297:5e-09,(KBS0714_MOLHKGIG_00282:0.0100593,TT9_LFPAFLNI_00281:0.00499956)0.909:0.0101127)0.951:0.0723531)0.733:0.0354745);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000063_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000063_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2a6d6d654cd4d0e4f14058a76aa2d503ddad62eb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000063_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00117:0.103974,(AS2_ACLBLIBL_00086:1.0168,(AS2_ACLBLIBL_00159:0.0990047,(TT9_LFPAFLNI_00222:0.000901637,(KBS0714_MOLHKGIG_00221:0.00658315,SA211_MHAAABBN_02234:0.00564873)0.879:0.00571932)1:0.0879877)0.958:0.0931407)1:0.103974);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000064_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000064_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..be75f118d65e6e684dfb7bbbf3598244af6dfd42
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000064_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00137:0.231943,(AS2_ACLBLIBL_00088:0.612287,(KBS0714_MOLHKGIG_00119:5e-09,(AS2_ACLBLIBL_00265:0.0576724,(SA211_MHAAABBN_02135:0,TT9_LFPAFLNI_00127:0):5e-09):0.0094014):0.450585):0.231943);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000065_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000065_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..988280021116604e6a7ee6a4bb96abbfabfd954a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000065_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00092:0.600483,KD337_NAFOICDF_00133:0.967764)0.801:0.124049,(AS2_ACLBLIBL_00093:0.553211,(AS2_ACLBLIBL_00195:0.156468,(KD337_NAFOICDF_00146:6e-09,TT9_LFPAFLNI_00201:0.0154097)0.978:0.135211)0.952:0.427716)0.801:0.124049);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000066_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000066_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..db0c577368bc277039718e64d28e638117158db1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000066_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00079:0.126939,KD337_NAFOICDF_00526:0.889959)0.912:0.0522248,(AS2_ACLBLIBL_00111:0.0515937,(SA211_MHAAABBN_02272:0.0107424,(KBS0714_MOLHKGIG_00258:0.00411397,TT9_LFPAFLNI_00257:5e-09)0.862:0.014808)0.98:0.0609834)0.912:0.0522248);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000068_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000068_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..20d44d6e84ec6d1f698cd95469a8497e0935d854
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000068_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00765:0.0138985,((AS2_ACLBLIBL_00129:1.40824,AS2_ACLBLIBL_00826:0.101623)0.966:0.12162,(TT9_LFPAFLNI_01952:0.00729428,(SA211_MHAAABBN_01724:0.0169255,KBS0714_MOLHKGIG_02014:0.00826595)0.427:0.00419015)0.999:0.059043)1:0.0138985);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000069_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000069_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f09c46ddf03d1f2a1ca0eab517f3dae7379c5745
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000069_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00100:0.0791974,(SA211_MHAAABBN_00102:0.47402,(AS2_ACLBLIBL_00135:0.0307001,(KBS0714_MOLHKGIG_00236:0.00521118,(SA211_MHAAABBN_02249:0.00210409,TT9_LFPAFLNI_00237:0.00210936)0.863:0.00542512)1:0.0556778)0.911:0.0878488)1:0.0791974);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000074_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000074_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..77cca506c21946229cae558e945f991d8a5b8be9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000074_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00184:0.0198677,KD337_NAFOICDF_00132:1.6973):0.0263905,(KD337_NAFOICDF_00130:0.0130374,((KBS0714_MOLHKGIG_00207:0,TT9_LFPAFLNI_00207:0):0.00625256,SA211_MHAAABBN_02200:0.00220745):0.00420591):0.0263905);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000077_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000077_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b942386ac24d300093d1990a3386a051fec168d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000077_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01743:0.01158,((KBS0714_MOLHKGIG_01029:0,SA211_MHAAABBN_00744:0,TT9_LFPAFLNI_00973:0):0.00311577,(AS2_ACLBLIBL_00187:0.474145,AS2_ACLBLIBL_01854:0.504841):0.611709):0.01158);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000082_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000082_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..25e3143f2ec5a4c1d38ec558ec53d8eb24f35635
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000082_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00266:0.0507778,KD337_NAFOICDF_00684:0.781922)0.769:0.0146412,(AS2_ACLBLIBL_00326:0.0759528,(TT9_LFPAFLNI_00062:0.00531867,(KBS0714_MOLHKGIG_00068:6e-09,SA211_MHAAABBN_02081:0.0106655)0.688:0.0065055)0.933:0.0343515)0.769:0.0146412);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000083_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000083_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..71e354f92e7b57a33b43d6e16f4ff465858fa1a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000083_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01735:0.343353,((AS2_ACLBLIBL_00331:0.000496434,AS2_ACLBLIBL_00544:0.0120449)0.978:0.205386,(SA211_MHAAABBN_00755:0.0184529,(KBS0714_MOLHKGIG_01042:5e-09,TT9_LFPAFLNI_00983:0.00608895)0.744:0.00661242)0.969:0.163577)1:0.343353);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000084_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000084_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a20f9b480f543b2050bd7fdf77969977b674fadc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000084_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00346:0.0130218,KD337_NAFOICDF_00284:0.0284201)1:0.0723187,(KD337_NAFOICDF_00293:0.188901,(TT9_LFPAFLNI_00048:0.0066236,(SA211_MHAAABBN_02066:0.0110926,KBS0714_MOLHKGIG_00053:0.00963487)0.845:0.0134207)1:0.162217)1:0.0723187);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000088_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000088_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7b0be25d4d2bfc74fcf0c15d7927ef2ea2aa4727
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000088_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02202:0.00424779,(AS2_ACLBLIBL_00399:5e-09,(TT9_LFPAFLNI_02004:0.185889,(AS2_ACLBLIBL_02642:0.836624,(KBS0714_MOLHKGIG_00610:0.0252467,SA211_MHAAABBN_01770:0.00912117)0.88:0.0739602)0.805:0.0564079)0.994:0.113143)1:0.00424779);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000089_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000089_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5ba65f68845e3650139fe1ad3de4c0bc88266857
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000089_tree.txt
@@ -0,0 +1 @@
+((TT9_LFPAFLNI_00601:5e-09,(KD337_NAFOICDF_00452:0.916914,KD337_NAFOICDF_01060:1.10629)0.961:0.495221)0.878:0.00204117,(KBS0714_MOLHKGIG_00630:5e-09,(AS2_ACLBLIBL_00402:0.00407998,KD337_NAFOICDF_02199:0.00409972)0.801:0.00409701)0.878:0.00204117);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000090_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000090_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f1e25c58904469610e8c96a00a3c5f24ac7527b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000090_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00384:0.0553472,(AS2_ACLBLIBL_01948:1.89173,(AS2_ACLBLIBL_00432:0.163476,((KBS0714_MOLHKGIG_02305:0,SA211_MHAAABBN_01998:0):0.00305769,TT9_LFPAFLNI_02246:5e-09):0.00840558):0.174569):0.0553472);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000092_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000092_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2b11522edd101ad4a9ca4bf87e78fc78cde325c3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000092_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00427:0.509673,(AS2_ACLBLIBL_00464:0.960635,(KBS0714_MOLHKGIG_00568:1.40758,(KBS0714_MOLHKGIG_00037:0.850779,(KBS0714_MOLHKGIG_02274:0.190842,TT9_LFPAFLNI_02208:0.250534)1:0.772146)0.872:0.220298)0.966:0.386398)1:0.509673);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000095_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000095_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..69ac32c2aa9426cb62b44290c60bd855965d7ff6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000095_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00486:0.201176,(SA211_MHAAABBN_01107:0.881632,((KBS0714_MOLHKGIG_02070:5e-09,TT9_LFPAFLNI_01998:0.0154458)0.978:0.192523,(AS2_ACLBLIBL_00560:0.307941,AS2_ACLBLIBL_00743:0.0955805)0.826:0.0799934)0.866:0.157741)1:0.201176);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000096_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000096_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..497a18a06d89f034e7c016bc09e9a5e7e8e797f5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000096_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00491:0.0966885,(TT9_LFPAFLNI_00166:1.46154,(AS2_ACLBLIBL_00566:0.0703984,(SA211_MHAAABBN_01898:0.00634878,(KBS0714_MOLHKGIG_02184:5e-09,TT9_LFPAFLNI_02129:0.00371049)0.775:0.00498833)0.983:0.0359085)0.706:0.0422593)1:0.0966885);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000097_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000097_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d58742ef21e47575f7485eb99220cfc010c20673
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000097_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00505:0.0292261,(KBS0714_MOLHKGIG_00604:1.54478,(AS2_ACLBLIBL_00578:0.115175,(KBS0714_MOLHKGIG_02174:0,SA211_MHAAABBN_01888:0,TT9_LFPAFLNI_02119:0):0.107955):0.097766):0.0292261);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000098_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000098_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..95aaa9c6fcb782c3357280a4a94218b3629bb4ee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000098_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00510:0.16577,KD337_NAFOICDF_01906:1.7108)0.228:0.0329425,(AS2_ACLBLIBL_00584:0.090165,(SA211_MHAAABBN_01882:0.00654387,(KBS0714_MOLHKGIG_02168:0.0185211,TT9_LFPAFLNI_02113:0.0124819)0.748:0.00573356)0.886:0.0608757)0.228:0.0329425);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000100_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000100_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6c34eea8869b01410d13bd0d60b604deda6eee94
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000100_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02275:0.121882,((KBS0714_MOLHKGIG_00554:0,SA211_MHAAABBN_00279:0,TT9_LFPAFLNI_00557:0):0.181141,(AS2_ACLBLIBL_00640:1.60505,AS2_ACLBLIBL_02391:0.0188826):0.124957):0.121882);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000105_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000105_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..75a94ffc4d038634211da37b834a5130eaf430a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000105_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00488:0.0967194,(AS2_ACLBLIBL_00740:0.198924,(AS2_ACLBLIBL_00736:0.411297,(AS2_ACLBLIBL_00741:0.175362,(KBS0714_MOLHKGIG_02072:0.0528906,TT9_LFPAFLNI_02000:5e-09)0.961:0.202581)1:0.60523)0.924:0.190763)1:0.0967194);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000106_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000106_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2c31301ebf10969746b4e1a98e996e254460b461
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000106_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01038:0.149934,(AS2_ACLBLIBL_00744:0.533326,AS2_ACLBLIBL_02335:1.56671)0.342:0.106927)0.987:0.0589014,(TT9_LFPAFLNI_01751:0.0162092,(KBS0714_MOLHKGIG_01830:0.00739438,SA211_MHAAABBN_01527:0.0124955)0.743:0.00374241)0.987:0.0589014);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000108_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000108_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..285aecda27428a941618e0c7438b9038bb605315
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000108_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00874:0.228715,(AS2_ACLBLIBL_00939:0.0553323,(TT9_LFPAFLNI_01841:0.0134394,(SA211_MHAAABBN_01617:0.0111856,(AS2_ACLBLIBL_00786:1.78314,KBS0714_MOLHKGIG_01921:5e-09)0.773:0.00197961)0.858:0.00942511)0.977:0.0527282)1:0.228715);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000109_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000109_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cbe5e030547a3b4769409d278306421112ec023c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000109_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00750:0.151827,((KBS0714_MOLHKGIG_02029:0.018909,(AS2_ACLBLIBL_00789:0.0274476,TT9_LFPAFLNI_01966:0.00208786)0.791:0.0416558)0.904:0.121398,(KBS0714_MOLHKGIG_02031:0.0221032,SA211_MHAAABBN_01738:5e-09)1:0.0632971)1:0.151827);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000111_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000111_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0290be974d31e6f6f040f24c53eac88dfae1ae0a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000111_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02057:0.0493715,(AS2_ACLBLIBL_02161:0.0300277,((SA211_MHAAABBN_00499:0.00380606,TT9_LFPAFLNI_00733:0.00206797)0.757:0.00365605,(KBS0714_MOLHKGIG_00769:0.0115989,AS2_ACLBLIBL_00806:0.918393)0.582:0.0016907)0.999:0.0466502)1:0.0493715);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000112_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000112_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e6057f882b915ac1226c9cb602e6c3b36b968198
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000112_tree.txt
@@ -0,0 +1 @@
+((TT9_LFPAFLNI_01911:6e-09,(AS2_ACLBLIBL_00872:0.124314,KD337_NAFOICDF_00818:0.170248)0.997:0.121846)0:2.5e-09,(KD337_NAFOICDF_00808:0.0144486,(SA211_MHAAABBN_01679:0.0047924,KBS0714_MOLHKGIG_01985:0.019219)0.236:0.00475592)0:2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000113_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000113_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..28a47f4afbf18a8899eb913cf454a69634b37de0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000113_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00875:0.142041,KD337_NAFOICDF_00823:0.197139):0.103096,(KD337_NAFOICDF_00810:0.0159145,((KBS0714_MOLHKGIG_01983:0,TT9_LFPAFLNI_01909:0):5e-09,SA211_MHAAABBN_01677:0.00624049):0.00917423):0.103096);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000114_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000114_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2a9b252a0770aaa3334a9141a8db828e093ad32b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000114_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00817:0.0307787,(((TT9_LFPAFLNI_01901:0.00407348,KBS0714_MOLHKGIG_01976:0.00851289)0.956:0.00822623,SA211_MHAAABBN_01669:5e-09)0.589:5e-09,(KBS0714_MOLHKGIG_01975:6e-09,AS2_ACLBLIBL_00882:0.113053)0.831:0.00860243)1:0.0307787);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000115_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000115_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a24f629d3cfcf73d860e561cdee6e3c2871ac463
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000115_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00854:0.0917662,KD337_NAFOICDF_02134:1.23738):0.0356679,(AS2_ACLBLIBL_00920:0.0331897,((KBS0714_MOLHKGIG_01939:0,TT9_LFPAFLNI_01858:0):0.0121581,SA211_MHAAABBN_01635:5e-09):0.0681954):0.0356679);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000117_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000117_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4b2edffec29a5a40eeb1e5ca9bdb336526fa3170
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000117_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00965:0.0353257,(AS2_ACLBLIBL_01331:1.8297,(AS2_ACLBLIBL_01024:0.0644875,((KBS0714_MOLHKGIG_01844:0,SA211_MHAAABBN_01541:0):0.00154969,TT9_LFPAFLNI_01765:0.0031322):0.148159):0.00472119):0.0353257);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000120_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000120_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6d3cc0c0cd62e8d6dcac4b0d1b01fe1c07046886
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000120_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00729:0.241491,((AS2_ACLBLIBL_01086:0,KBS0714_MOLHKGIG_01790:0):1.03319,(TT9_LFPAFLNI_01985:0.0118496,(SA211_MHAAABBN_01757:0.0147093,KBS0714_MOLHKGIG_02051:5e-09):0.00285663):0.151109):0.241491);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000123_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000123_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bb21bca9a2498b0d1f14635f532c1928c6a45f91
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000123_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01126:0.0878436,(AS2_ACLBLIBL_01209:0.218086,(AS2_ACLBLIBL_01197:0.115888,(SA211_MHAAABBN_01385:0.00272092,(KBS0714_MOLHKGIG_01681:0.00848626,TT9_LFPAFLNI_01610:0.00281284)0.753:0.00290541)1:0.103973)0.988:0.110621)1:0.0878436);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000124_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000124_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..447d01e282ff1189c3d26e61c179288f62a3d08d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000124_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02325:0.0113135,(AS2_ACLBLIBL_01218:1.78079,(SA211_MHAAABBN_00229:0.0305873,(AS2_ACLBLIBL_02441:0.0504917,(KBS0714_MOLHKGIG_00509:0.00992303,TT9_LFPAFLNI_00508:0.0188854)0.947:0.0156897)0.509:0.00653855)0.83:0.0361289)1:0.0113135);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000128_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000128_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c70e20d71daf5ad9ce1e64a1c3f60ea6a5851d65
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000128_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_01168:0.00462455,(KBS0714_MOLHKGIG_01636:0.0208939,TT9_LFPAFLNI_01565:0.0206399)0.987:0.0417622)0.951:0.0144739,(AS2_ACLBLIBL_01259:0.0375405,(KD337_NAFOICDF_01210:0.777983,SA211_MHAAABBN_01341:5e-09)0.733:0.0120842)0.951:0.0144739);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000130_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000130_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..756f322dc33e430ea471b643cfab3db800bba885
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000130_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01198:0.013121,((AS2_ACLBLIBL_01275:0.849017,AS2_ACLBLIBL_01290:0.0418183)0.808:0.0265374,(TT9_LFPAFLNI_01531:0.00540258,(KBS0714_MOLHKGIG_01604:0.0017942,SA211_MHAAABBN_01316:5e-09)0.792:0.00179762)0.929:0.0110508)1:0.013121);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000131_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000131_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..67de7cfd95749432f94f171f94a889c85d59fbab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000131_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_00620:0.027894,(KD337_NAFOICDF_00689:0.050455,KD337_NAFOICDF_02215:1.26861)0:5e-09)0.595:0.00239651,(KD337_NAFOICDF_02211:0.0443009,(AS2_ACLBLIBL_01310:0.0605528,SA211_MHAAABBN_00361:0.0363587)0.394:0.0161977)0.595:0.00239651);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000132_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000132_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..662f778c7f5e5aedaf88a8f57b9115d2ae086e4d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000132_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00456:0.0674171,(KBS0714_MOLHKGIG_02251:0.0762475,((AS2_ACLBLIBL_01337:0.0207395,TT9_LFPAFLNI_01512:0.00693389)0.15:5e-09,(KBS0714_MOLHKGIG_01585:0.00833232,SA211_MHAAABBN_01296:0.00691918)0.251:0.00302958)1:0.709677)1:0.0674171);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000133_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000133_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..da8ec16b5b0373a8b6144ecdb36e260e751fa6b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000133_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00458:0.0796873,(KBS0714_MOLHKGIG_02249:0.0799541,((AS2_ACLBLIBL_01338:0,KBS0714_MOLHKGIG_01584:0,TT9_LFPAFLNI_01511:0):0.00405034,SA211_MHAAABBN_01295:6e-09):1.3278):0.0796873);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000134_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000134_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..402288ad49a5776251f3f9e2ac33eb423517aeb9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000134_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01234:0.00361291,(TT9_LFPAFLNI_01509:0.00897469,(KBS0714_MOLHKGIG_01582:5e-09,((AS2_ACLBLIBL_01340:0.00923997,SA211_MHAAABBN_01293:0.00615026)0.25:0.00614751,SA211_MHAAABBN_01292:0.00334118)0.013:5e-09)0.848:0.00358763)1:0.00361291);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000135_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000135_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8529b9dbe3665d6898927443790558674728d033
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000135_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_01581:0.00505921,(AS2_ACLBLIBL_01342:0.0136529,KD337_NAFOICDF_01767:1.58933)0.789:0.0223173)0.768:0.000634585,(KD337_NAFOICDF_01235:0.00716569,(SA211_MHAAABBN_01291:0.00247269,TT9_LFPAFLNI_01508:5e-09)0.779:0.00137153)0.768:0.000634585);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000136_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000136_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..34c290873a461264a64b5fd799942964382152e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000136_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01248:0.060227,(AS2_ACLBLIBL_02577:0.292769,(AS2_ACLBLIBL_01355:0.0701402,(TT9_LFPAFLNI_01496:0.00765813,(KBS0714_MOLHKGIG_01569:5e-09,SA211_MHAAABBN_01279:0.00414549)0.101:0.00708532)1:0.112051)0.991:0.0797216)1:0.060227);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000138_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000138_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..af7fd1b94fe003d0eabb96eec9ddccf04754fa94
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000138_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_01267:0.00863428,KD337_NAFOICDF_01296:1.47263)0.871:0.0571502,(AS2_ACLBLIBL_01376:0.0343491,(TT9_LFPAFLNI_01476:5e-09,(SA211_MHAAABBN_01259:0.00437517,KBS0714_MOLHKGIG_01549:5e-09)0.777:0.00435445)0.982:0.0481655)0.871:0.0571502);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000139_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000139_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ad3228841e578dadcfc933c116485ba663b631e5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000139_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00286:1.71958,KD337_NAFOICDF_01277:0.16554)0.64:0.0129787,(AS2_ACLBLIBL_01386:0.079855,(SA211_MHAAABBN_01249:0.0190697,(KBS0714_MOLHKGIG_01539:0.00762368,TT9_LFPAFLNI_01466:0.00370659)0.027:0.00878536)0.975:0.0501834)0.64:0.0129787);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000142_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000142_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ba03b37a25cd585e59b0d68b64df6d733cbf5c4a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000142_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00347:0.0938684,TT9_LFPAFLNI_00111:0.102304)0.999:0.16288,(KD337_NAFOICDF_00694:0.142314,(SA211_MHAAABBN_02019:1.19751,(AS2_ACLBLIBL_01501:0.750895,KD337_NAFOICDF_00288:0.414976)0.938:0.295164)1:1.15037)0.999:0.16288);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000143_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000143_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..52e43ac667c786cb8d16e16fe51c87f959138020
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000143_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01419:0.179044,(AS2_ACLBLIBL_01524:0.0821859,(KBS0714_MOLHKGIG_01953:1.50914,(TT9_LFPAFLNI_01324:0.00400482,(SA211_MHAAABBN_01089:0.0280004,KBS0714_MOLHKGIG_01369:0.0090836)0.886:0.0114932)0.723:0.0343099)0.994:0.148219)1:0.179044);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000144_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000144_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f0f1101f0c71c95db810de6572e59e4567463901
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000144_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_01415:1.22889,KD337_NAFOICDF_01447:0.0508999):0.101791,(AS2_ACLBLIBL_01551:0.0622696,(KBS0714_MOLHKGIG_01341:0.00708199,(SA211_MHAAABBN_01061:0,TT9_LFPAFLNI_01296:0):0.00339804):0.0401779):0.101791);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000147_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000147_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..613b16a84a6c849920b26a2b7edb2cdf19ac63e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000147_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01510:0.0199844,(TT9_LFPAFLNI_01882:1.52538,(AS2_ACLBLIBL_01615:0.0327204,(KBS0714_MOLHKGIG_01272:0,SA211_MHAAABBN_00991:0,TT9_LFPAFLNI_01230:0):0.0448784):0.0464776):0.0199844);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000149_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000149_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..94c3c4f453347a6c8c52b94ac5c3a084801bd15f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000149_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01669:0.0354218,(SA211_MHAAABBN_00373:0.895208,(AS2_ACLBLIBL_01776:0.0354575,(SA211_MHAAABBN_00836:0.00105394,(KBS0714_MOLHKGIG_01117:0.00106265,TT9_LFPAFLNI_01067:0.000939072)0.789:0.00301513)0.99:0.0242463)0.957:0.0506349)1:0.0354218);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000152_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000152_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..018afb1fed1068294e53631f7f8f28be797399a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000152_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01843:0.0759705,(AS2_ACLBLIBL_01817:1.20204,(TT9_LFPAFLNI_00936:0.00464997,(KBS0714_MOLHKGIG_00993:0.0139345,(AS2_ACLBLIBL_01896:0.0478119,SA211_MHAAABBN_00707:5e-09)0.036:0.0139007)0.883:0.0141468)0.848:0.0937577)1:0.0759705);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000153_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000153_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..96e64547f640d653ed3173c24060448c0710c22e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000153_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01711:0.0406012,(KBS0714_MOLHKGIG_00838:0.715086,(AS2_ACLBLIBL_01822:0.0750625,(KBS0714_MOLHKGIG_01065:0.00849817,(SA211_MHAAABBN_00784:0,TT9_LFPAFLNI_01012:0):5e-09):0.0519126):0.102233):0.0406012);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000156_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000156_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b47b8ebab6c4ba4c8ea7d108fa67c373404db9ad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000156_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01946:0.181629,((AS2_ACLBLIBL_02052:0.00464064,TT9_LFPAFLNI_00842:0.00702808):0.28112,(AS2_ACLBLIBL_02050:1.39222,(KBS0714_MOLHKGIG_00886:0,SA211_MHAAABBN_00608:0):0.29891):0.194492):0.181629);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000160_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000160_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..423ef8372d7b1551265ab8914d514b259ba1e11b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000160_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00342:1.42967,KD337_NAFOICDF_02098:0.305461)0.999:0.15462,(AS2_ACLBLIBL_02222:0.175407,(SA211_MHAAABBN_00462:0.0158796,(KBS0714_MOLHKGIG_00731:0.00187336,TT9_LFPAFLNI_00695:0.00282214)0.91:0.0131673)1:0.157637)0.999:0.15462);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000161_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000161_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9acb6a654f39fd95105487dc2b22bd9daa5eaff1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000161_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02443:0.678427,(AS2_ACLBLIBL_02262:0.29331,(AS2_ACLBLIBL_02263:0.281818,(TT9_LFPAFLNI_00662:0.00796157,(KBS0714_MOLHKGIG_00692:5e-09,SA211_MHAAABBN_00429:0.00479367)0.863:0.0212444)0.853:0.0889063)0.639:0.0474468)1:0.678427);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000162_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000162_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2bda206105260502a40167ce5a45054facfe58a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000162_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02170:0.0617663,(KBS0714_MOLHKGIG_00841:1.91988,(AS2_ACLBLIBL_02313:0.0673918,(KBS0714_MOLHKGIG_00650:0.0165221,(SA211_MHAAABBN_00387:0.007385,TT9_LFPAFLNI_00620:0.0048582)0.982:0.0270805)0.967:0.0393187)0.891:0.150212)1:0.0617663);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000165_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000165_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e945b1ecf1ac3230a0fe19bb7d75a8aa305a7de1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000165_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02283:0.208509,(AS2_ACLBLIBL_02400:0.146037,(AS2_ACLBLIBL_02399:0.0757527,(KBS0714_MOLHKGIG_00547:0.00378451,(TT9_LFPAFLNI_00550:0.00711717,SA211_MHAAABBN_00272:0.0106191)0.763:0.00328331)0.955:0.0788898)0.913:0.125163)1:0.208509);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000168_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000168_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..263700ee47502056387875be50164f8831690493
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000168_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02405:0.0525143,(AS2_ACLBLIBL_02535:0.101283,(AS2_ACLBLIBL_02534:0.0969295,(KBS0714_MOLHKGIG_00423:0.0165947,(SA211_MHAAABBN_00144:0.0118738,TT9_LFPAFLNI_00426:0.0062224)0.916:0.011001)0.995:0.0782166)0.661:0.0184057)1:0.0525143);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000169_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000169_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6e2444a8312cf8d0103c18ab5bbc35ed741efe24
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000169_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02410:0.415657,(AS2_ACLBLIBL_02542:0.663339,(AS2_ACLBLIBL_02541:0.230212,(SA211_MHAAABBN_00139:0.0561719,(KBS0714_MOLHKGIG_00418:5e-09,TT9_LFPAFLNI_00421:0.00173399)0.951:0.0325798)0.792:0.0723654)0.999:0.356889)1:0.415657);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000170_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000170_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5609ce2941f8d61b865b97d5e98ca6054dfdd749
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000170_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02415:0.0161681,(AS2_ACLBLIBL_02646:1.81989,(AS2_ACLBLIBL_02547:0.00811034,((KBS0714_MOLHKGIG_00412:0,TT9_LFPAFLNI_00415:0):5e-09,SA211_MHAAABBN_00132:0.00311154):0.0202945):0.0436164):0.0161681);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000171_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000171_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..778a280cbd082a879c8909ce78127b97e68afa4a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000171_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_02569:0.0292659,KD337_NAFOICDF_01756:0.0962103)0.446:0.00286866,((TT9_LFPAFLNI_00392:0.00663066,(KBS0714_MOLHKGIG_00386:5e-09,SA211_MHAAABBN_00110:0.00346887)0.875:0.00379943)0.848:0.00361157,KD337_NAFOICDF_02444:0.0341839)0.446:0.00286866);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000173_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000173_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..049d5edb2e289e3b9a08fe286398f9a3845ec6d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000173_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_01201:5e-09,(KD337_NAFOICDF_00271:1.76351,KD337_NAFOICDF_01824:1.68265):0.0174657):0.00915209,(KBS0714_MOLHKGIG_01601:0.00730083,(SA211_MHAAABBN_01313:0,TT9_LFPAFLNI_01528:0):0.00729401):0.00915209);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000174_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000174_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..95f8a1bf5aa16a35c8738060cc49435dda2e2f5d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000174_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00005:0.0836295,(AS2_ACLBLIBL_00004:0.0659427,(SA211_MHAAABBN_00047:0.00442161,(KBS0714_MOLHKGIG_00331:0.013263,TT9_LFPAFLNI_00338:0.00643579)0.862:0.00389058)0.98:0.0296639)1:0.0836295);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000176_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000176_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cfc5a8bc47f5407a4849fb3ddfc37647db7aab2e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000176_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00007:0.0385114,(AS2_ACLBLIBL_00009:0.0288009,((KBS0714_MOLHKGIG_00326:0,SA211_MHAAABBN_00042:0):5e-09,TT9_LFPAFLNI_00333:0.00603977):0.0388034):0.0385114);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000177_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000177_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f35e30cd6e098765120744e27f2cb5b0a195342
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000177_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01180:0.46526,(AS2_ACLBLIBL_00011:1.22737,(AS2_ACLBLIBL_02586:0.0063459,(KBS0714_MOLHKGIG_00377:0,TT9_LFPAFLNI_00383:0):5e-09):0.323707):0.46526);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000178_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000178_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2d3e935497f7426dff2539de398a5b123ff02a76
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000178_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00008:0.0605653,(AS2_ACLBLIBL_00012:0.0286617,(TT9_LFPAFLNI_00332:0.0063449,(KBS0714_MOLHKGIG_00325:0.00206731,SA211_MHAAABBN_00040:0.00414453)0.934:0.00820073)0.983:0.0310679)1:0.0605653);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000180_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000180_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..930d63fc11799449614f21f36ee71a799ad4594c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000180_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00010:0.0187213,(AS2_ACLBLIBL_00014:0.0298683,((KBS0714_MOLHKGIG_00323:0,SA211_MHAAABBN_00038:0):0.00615218,TT9_LFPAFLNI_00330:5e-09):0.0212699):0.0187213);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000181_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000181_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0d358f171e7ca0faba05c671f57e519989e912ea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000181_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00011:0.282117,(AS2_ACLBLIBL_00015:0.140706,(KBS0714_MOLHKGIG_00322:0,SA211_MHAAABBN_00037:0,TT9_LFPAFLNI_00329:0):0.0889513):0.282117);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000184_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000184_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1fb3222f0742d589d0b65ad9afd0852ad605cbf1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000184_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00014:0.113567,(AS2_ACLBLIBL_00018:0.0659021,(KBS0714_MOLHKGIG_00319:0.00519975,(SA211_MHAAABBN_00034:0.00428273,TT9_LFPAFLNI_00326:5e-09)0.919:0.0163843)0.868:0.0354733)1:0.113567);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000186_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000186_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..052ac8abff6a237532c5dccdd855c68c623c9cc3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000186_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00017:0.319252,(AS2_ACLBLIBL_00021:0.131125,(KBS0714_MOLHKGIG_00316:5e-09,(SA211_MHAAABBN_00031:0,TT9_LFPAFLNI_00323:0):0.02193):0.123467):0.319252);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000187_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000187_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7ba3e3b2b106acb3240cd97f58b46cc255c92c34
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000187_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00018:0.133939,(AS2_ACLBLIBL_00022:0.068271,(KBS0714_MOLHKGIG_00315:0.0158511,(SA211_MHAAABBN_00030:0.00877429,TT9_LFPAFLNI_00322:5e-09)0.8:0.0110515)0.984:0.0707156)1:0.133939);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000188_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000188_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ff908f92a8c60a8f83e3572009f8a6cf6dbd113a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000188_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00019:0.0769854,(AS2_ACLBLIBL_00023:0.0493202,(KBS0714_MOLHKGIG_00314:0.00922261,(SA211_MHAAABBN_00029:0,TT9_LFPAFLNI_00321:0):0.00542315):0.0253253):0.0769854);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000189_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000189_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f57f98ba51eae21b1b89427c8d371e7f26f0b4aa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000189_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00020:0.166436,(AS2_ACLBLIBL_00024:0.183836,(SA211_MHAAABBN_00028:5e-09,(KBS0714_MOLHKGIG_00313:0.0242438,TT9_LFPAFLNI_00320:0.00803087)0.775:0.00795709)0.925:0.0646742)1:0.166436);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000191_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000191_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..740419e2c0defe761fddd2cd1f98f8ce23f8a229
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000191_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00025:0.100956,(AS2_ACLBLIBL_00029:0.175924,(KBS0714_MOLHKGIG_00308:5e-09,(TT9_LFPAFLNI_00315:0.00382702,SA211_MHAAABBN_00023:5e-09)0.897:0.00254642)1:0.183118)1:0.100956);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000193_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000193_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2bb2dc3411671aa8f10d17e213027f9bf356ec4c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000193_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00027:0.219292,(AS2_ACLBLIBL_00031:0.0588647,(SA211_MHAAABBN_00021:0.0056101,(KBS0714_MOLHKGIG_00306:0.0155805,TT9_LFPAFLNI_00313:5e-09)0.611:0.000552585)0.954:0.0295391)1:0.219292);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000195_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000195_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f4d9bbefb0879d3b04390c678e50e63fc7c8ddce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000195_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00030:0.294637,(AS2_ACLBLIBL_00051:0.185377,(TT9_LFPAFLNI_00310:5e-09,(KBS0714_MOLHKGIG_00303:0.0238753,SA211_MHAAABBN_00011:0.0272789)0.6:0.0126493)0.998:0.200847)1:0.294637);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000199_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000199_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90e70a574ca139e5d62b1256711cbd12f0be20c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000199_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00034:0.180196,(KBS0714_MOLHKGIG_00298:0.165864,(AS2_ACLBLIBL_00056:0.114154,(SA211_MHAAABBN_00006:0.0370136,TT9_LFPAFLNI_00305:0.00987664)0.978:0.0899591)0.692:0.0647294)1:0.180196);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000201_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000201_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..94e24e62344d1744b6068fd43c1eb8c5a874a7a4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000201_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00039:0.10969,(AS2_ACLBLIBL_00060:0.0338653,(KBS0714_MOLHKGIG_00294:5e-09,(SA211_MHAAABBN_00002:5e-09,TT9_LFPAFLNI_00301:0.00580708)0.852:0.00582184)0.845:0.0143945)1:0.10969);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000204_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000204_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cddd05172c90d44a4050db955804d271827b2be2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000204_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00042:0.0524966,(AS2_ACLBLIBL_00063:0.0211484,(TT9_LFPAFLNI_00298:0.0179769,(KBS0714_MOLHKGIG_00291:5e-09,SA211_MHAAABBN_02314:0.00666351)0.759:0.0102029)0.994:0.0858688)1:0.0524966);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000207_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000207_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d59ddc6120d663aec6b902a29cbe542730d0e426
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000207_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00049:0.0736913,(AS2_ACLBLIBL_00069:0.316955,(KBS0714_MOLHKGIG_00284:0.0517599,(SA211_MHAAABBN_02306:0.00227599,TT9_LFPAFLNI_00290:0.00219277)0.924:0.0217028)0.999:0.147954)1:0.0736913);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000208_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000208_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8e043132a4be6477a437b13e195313d09bb5b678
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000208_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00056:0.0846097,(AS2_ACLBLIBL_00070:0.0518247,(KBS0714_MOLHKGIG_00283:0.0102843,(SA211_MHAAABBN_02298:0.0056559,TT9_LFPAFLNI_00282:0.00880445)1:0.0500678)0.958:0.0354758)1:0.0846097);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000209_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000209_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c45226a12acbc96f75137e7dd64c3b919ab1c3dd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000209_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00058:0.28101,(AS2_ACLBLIBL_00072:0.193116,(TT9_LFPAFLNI_00280:0.0057023,(KBS0714_MOLHKGIG_00281:0.00724657,SA211_MHAAABBN_02296:0.00600691)0.975:0.0157113)1:0.129618)1:0.28101);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000212_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000212_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0cb0017f5b213a082f8a49f2c38420bf2e1bc916
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000212_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00061:0.0685134,(AS2_ACLBLIBL_00076:0.0443408,(TT9_LFPAFLNI_00276:5e-09,(KBS0714_MOLHKGIG_00277:0.00663991,SA211_MHAAABBN_02292:5e-09)0.888:0.00662514)0.973:0.0417904)1:0.0685134);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000214_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000214_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eac71ea36bd9fe4f8629adeabd41c0dfc8bd0b3a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000214_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00064:0.0561884,(AS2_ACLBLIBL_00087:0.0425379,(KBS0714_MOLHKGIG_00270:0.00934128,(SA211_MHAAABBN_02285:0,TT9_LFPAFLNI_00268:0):0.00256215):0.018143):0.0561884);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000216_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000216_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ea9c1e13ec7f013ede6fd634cca1d840588f421f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000216_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00135:0.289552,(AS2_ACLBLIBL_00090:0.595129,(AS2_ACLBLIBL_00267:0.0230703,(SA211_MHAAABBN_02133:0,TT9_LFPAFLNI_00125:0):0.0178772):0.903826):0.289552);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000217_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000217_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..32963f54a0496579a3ae35e5a1d2911c7db4e9f8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000217_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00066:0.164121,(AS2_ACLBLIBL_00095:0.0204433,(KBS0714_MOLHKGIG_00268:0.00241995,(SA211_MHAAABBN_02281:0,TT9_LFPAFLNI_00266:0):0.0024723):0.0306006):0.164121);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000218_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000218_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..30323f44425d199e013b2abebb142b8d195547cf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000218_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00067:0.148741,(AS2_ACLBLIBL_00096:0.0749219,(KBS0714_MOLHKGIG_00267:0,SA211_MHAAABBN_02280:0,TT9_LFPAFLNI_00265:0):0.0492972):0.148741);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000219_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000219_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bb878eda2c8c13557e05803c87b8fd5ca716ce5c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000219_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00068:0.0537833,(AS2_ACLBLIBL_00097:0.0538067,(SA211_MHAAABBN_02279:0.00475919,(KBS0714_MOLHKGIG_00266:0.0238532,TT9_LFPAFLNI_00264:0.00943896)0.75:0.004734)0.997:0.077188)1:0.0537833);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000220_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000220_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..56fb5fa088da599279a6a103d8f9f834cb54d716
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000220_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00069:0.0580042,(AS2_ACLBLIBL_00098:0.0781275,(KBS0714_MOLHKGIG_00265:0,SA211_MHAAABBN_02278:0,TT9_LFPAFLNI_00263:0):0.00947334):0.0580042);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000221_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000221_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9640d88c8b309c5856d737566d92b0cc2a0095f5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000221_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00070:0.190615,(AS2_ACLBLIBL_00099:0.0263461,((KBS0714_MOLHKGIG_00264:0,SA211_MHAAABBN_02277:0):0.00644262,TT9_LFPAFLNI_00262:0.0133719):0.0366556):0.190615);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000222_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000222_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e9f3d51545ce110fff79baaa382c270c4c69d305
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000222_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00071:0.0862732,(AS2_ACLBLIBL_00100:0.0751504,(TT9_LFPAFLNI_00261:0.00346563,(KBS0714_MOLHKGIG_00263:6e-09,SA211_MHAAABBN_02276:0.00346974)0:5e-09)0.976:0.0494805)1:0.0862732);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000229_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000229_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b95fc75a2c9bdef63efe98bb513f6cba685957c7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000229_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00089:0.0994527,(AS2_ACLBLIBL_00121:0.0316347,(KBS0714_MOLHKGIG_00249:0.0211894,(SA211_MHAAABBN_02261:0,TT9_LFPAFLNI_00249:0):5e-09):0.0770112):0.0994527);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000231_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000231_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b4bb9370bcc005e511a03b1b817ac9ac85b3e9a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000231_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00092:0.180749,(AS2_ACLBLIBL_00123:0.0230347,(TT9_LFPAFLNI_00246:0.00294237,(KBS0714_MOLHKGIG_00246:0.0029907,SA211_MHAAABBN_02258:5e-09)0.783:0.00305186)0.922:0.0221317)1:0.180749);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000233_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000233_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..85a64a21e11b69f7797b38d012ee2ee829bd5058
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000233_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00095:0.405255,(AS2_ACLBLIBL_00128:0.127607,(KBS0714_MOLHKGIG_00241:0.00866558,(SA211_MHAAABBN_02254:0.00871661,TT9_LFPAFLNI_00242:0.00891529)0.684:0.00960281)0.889:0.0836151)1:0.405255);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000235_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000235_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f1eb3a336004ffbe530d6d7c323e252329df419c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000235_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00097:0.205511,(AS2_ACLBLIBL_00132:0.0525527,(KBS0714_MOLHKGIG_00239:0.00550086,(SA211_MHAAABBN_02252:0,TT9_LFPAFLNI_00240:0):0.00554103):0.0527197):0.205511);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000238_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000238_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ef2ebe8443a3bf97ce74fcdd1d8670526eaba039
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000238_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00101:0.104431,(AS2_ACLBLIBL_00136:0.0673638,(TT9_LFPAFLNI_00236:0.00238759,(KBS0714_MOLHKGIG_00235:0.0220865,SA211_MHAAABBN_02248:0.00269923)0.735:0.00584761)1:0.0900616)1:0.104431);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000241_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000241_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd98a539d54675714e51896c7b775e41bc583494
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000241_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00143:0.85591,AS2_ACLBLIBL_01265:0.035196)0.827:0.0208604,(SA211_MHAAABBN_01336:0.0081715,(KBS0714_MOLHKGIG_01631:0.00965706,TT9_LFPAFLNI_01560:0.0069874)0.975:0.0175218)0.827:0.0208604);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000244_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000244_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..22f60a1fcdfade20d348b2d1a383f3d08fbccda4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000244_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00107:0.0649343,(AS2_ACLBLIBL_00150:0.051535,((KBS0714_MOLHKGIG_00231:0,SA211_MHAAABBN_02244:0):0.00347542,TT9_LFPAFLNI_00232:0.0034832):0.0357755):0.0649343);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000247_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000247_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d7a1125ff0839e373ac2972cc307c334980948bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000247_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00112:0.142305,(AS2_ACLBLIBL_00154:0.1794,(SA211_MHAAABBN_02239:0.0104514,(KBS0714_MOLHKGIG_00226:0.0109475,TT9_LFPAFLNI_00227:0.0110726)0.538:0.00684316)1:0.143732)1:0.142305);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000249_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000249_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3dc433c9e0d015d398c544c8eff27cdccb018824
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000249_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00114:0.235028,(AS2_ACLBLIBL_00156:0.186024,(SA211_MHAAABBN_02237:0.00124699,(TT9_LFPAFLNI_00225:0.0199742,KBS0714_MOLHKGIG_00224:0.00991736)0.488:0.00624948)0.996:0.185076)1:0.235028);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000253_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000253_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bced9c4dfcf947b0ae14d6e880556766cbd75089
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000253_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00120:0.128342,(AS2_ACLBLIBL_00169:0.202063,(TT9_LFPAFLNI_00214:0.0168546,(KBS0714_MOLHKGIG_00214:0.0364367,SA211_MHAAABBN_02207:0.0280191)0.448:0.0110104)0.795:0.0750789)1:0.128342);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000254_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000254_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6578eb246524d2b9b9a44e63e8abfd21c8cd1885
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000254_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00172:0.644016,AS2_ACLBLIBL_02563:0.212973)0.998:0.105561,(SA211_MHAAABBN_00117:0.0128809,(KBS0714_MOLHKGIG_00393:0.0344105,TT9_LFPAFLNI_00399:0.0142558)0.356:0.00710731)0.998:0.105561);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000259_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000259_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..02d2e39c10d261a4f4d00f8d9a0a1f526d751919
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000259_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00128:0.367252,(AS2_ACLBLIBL_00182:0.121189,(TT9_LFPAFLNI_00209:5e-09,(KBS0714_MOLHKGIG_00209:0.0314844,SA211_MHAAABBN_02202:5e-09)0.491:0.00770987)0.958:0.0982246)1:0.367252);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000260_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000260_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..66df9f4ab2403349bac728d0f373fdb129e15c1c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000260_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00129:0.327524,(AS2_ACLBLIBL_00183:0.220781,(SA211_MHAAABBN_02201:0.0309487,(KBS0714_MOLHKGIG_00208:0.00786306,TT9_LFPAFLNI_00208:0.00391453)0.679:0.0069961)0.643:0.0668585)1:0.327524);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000262_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000262_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2ef574a5d6c0b57105f40ce0352b94f54d7b3369
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000262_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00144:0.00746657,(AS2_ACLBLIBL_00190:0.200145,(TT9_LFPAFLNI_00204:0.0065468,(KBS0714_MOLHKGIG_00202:0.00392574,SA211_MHAAABBN_02197:0.00677438)0.281:5e-09)0.891:0.00736221)1:0.00746657);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000263_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000263_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..83c3c2a201ce7bbac733956488e56ca123c091a4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000263_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00140:0.00180011,(KBS0714_MOLHKGIG_00204:0.00714675,(AS2_ACLBLIBL_00198:0.210022,(SA211_MHAAABBN_02199:0,TT9_LFPAFLNI_00206:0):0.00788666):0.00453934):0.00180011);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000265_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000265_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4ec5c9f0784ca23c0020d2d332e6e6db0891317c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000265_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00151:0.00718281,(AS2_ACLBLIBL_00203:0.154052,(KBS0714_MOLHKGIG_00196:0.0261374,(SA211_MHAAABBN_02192:0,TT9_LFPAFLNI_00196:0):0.0297379):0.0193607):0.00718281);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000266_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000266_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5805c9269105368ce6de74b8d4b95a6e1a4a8c5d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000266_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00152:0.00197179,(AS2_ACLBLIBL_00204:0.550495,((KBS0714_MOLHKGIG_00195:0,SA211_MHAAABBN_02191:0):0.0164235,TT9_LFPAFLNI_00195:0.125915):0.016169):0.00197179);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000271_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000271_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b36ceecc5ce105653f5ee7533ea84e88b82ca3ef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000271_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00159:0.00454226,(AS2_ACLBLIBL_00214:0.00543334,((KBS0714_MOLHKGIG_00187:0,TT9_LFPAFLNI_00184:0):0.00179029,SA211_MHAAABBN_02183:0.00180222):5e-09):0.00454226);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000273_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000273_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a1e57839fbc1e786a70e75bf6011e84bc2e9f2f3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000273_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00161:0.0671427,(AS2_ACLBLIBL_00216:0.0152399,(KBS0714_MOLHKGIG_00185:0.00224517,(SA211_MHAAABBN_02181:0.0196056,TT9_LFPAFLNI_00182:5e-09)0.857:0.0219581)0.664:0.0155477)1:0.0671427);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000277_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000277_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..256fc08982b053f46335f377c9805fb7297f2256
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000277_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00165:0.190677,((SA211_MHAAABBN_02177:0,TT9_LFPAFLNI_00178:0):5e-09,(AS2_ACLBLIBL_00220:0.023321,KBS0714_MOLHKGIG_00181:0.00780488):0.00376092):0.190677);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000282_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000282_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8c82c3d5da7b2698aec20d8dfd6b4d747ba0f3d0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000282_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00171:0.0463413,(AS2_ACLBLIBL_00232:0.052447,(KBS0714_MOLHKGIG_00151:5e-09,(TT9_LFPAFLNI_00159:0.00697101,SA211_MHAAABBN_02165:0.00696276)0.833:0.00697655)0.879:0.0329464)1:0.0463413);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000283_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000283_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..de790ad3241324817c0eb55fec631cc5e498982b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000283_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00172:0.208981,(AS2_ACLBLIBL_00233:0.086044,(TT9_LFPAFLNI_00158:0.00237268,(KBS0714_MOLHKGIG_00150:5e-09,SA211_MHAAABBN_02164:5e-09)0.913:5e-09)0.977:0.0629937)1:0.208981);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000285_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000285_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5551f0f35827fa1c4876874b70f52d84c5df9af6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000285_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00820:0.0609392,(AS2_ACLBLIBL_00235:0.0140587,(KBS0714_MOLHKGIG_00148:0,SA211_MHAAABBN_02162:0,TT9_LFPAFLNI_00156:0):0.00629356):0.0609392);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000288_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000288_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..29ee7062e76f5dd7a00b5b971a65db537d68ed77
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000288_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00174:0.0829506,(AS2_ACLBLIBL_00240:0.0244711,(KBS0714_MOLHKGIG_00144:5e-09,(SA211_MHAAABBN_02158:0.00338741,TT9_LFPAFLNI_00152:0.00340491)0.721:0.00685021)0.99:0.0656193)1:0.0829506);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000290_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000290_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8cc7213b8dab0e3f7b61941c3afb507c99c8e4cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000290_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00176:0.119104,(AS2_ACLBLIBL_00242:0.0399919,((KBS0714_MOLHKGIG_00142:0,TT9_LFPAFLNI_00150:0):5e-09,SA211_MHAAABBN_02156:0.0167454):0.0627288):0.119104);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000291_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000291_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b481de4c475f7ebf3835dc4c0b81ff1b9bef2ffb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000291_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00177:0.168865,(AS2_ACLBLIBL_00243:0.107545,(KBS0714_MOLHKGIG_00141:0.00311403,(SA211_MHAAABBN_02155:0,TT9_LFPAFLNI_00149:0):0.00515727):0.0764295):0.168865);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000292_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000292_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6064f77bbd88c8616dec2a594f9fd6f62b9a733a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000292_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00178:0.0302064,(AS2_ACLBLIBL_00244:0.0301191,((KBS0714_MOLHKGIG_00140:0,TT9_LFPAFLNI_00148:0):0.0175469,SA211_MHAAABBN_02154:0.00771428):0.0304354):0.0302064);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000293_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000293_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..40a5b7a62123d997a780284741b56687e8c34c04
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000293_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00179:0.191139,(AS2_ACLBLIBL_00245:0.0163524,(SA211_MHAAABBN_02153:0.0163961,(KBS0714_MOLHKGIG_00139:0,TT9_LFPAFLNI_00147:0):0.00657559):5e-09):0.191139);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000294_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000294_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..df8bc2e3f728f67c10de986f189df18cfe580e4e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000294_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00180:0.0615904,(AS2_ACLBLIBL_00246:0.145803,(KBS0714_MOLHKGIG_00138:6e-09,(SA211_MHAAABBN_02152:0.0032899,TT9_LFPAFLNI_00146:0.00654695)0.285:0.00980789)1:0.108092)1:0.0615904);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000296_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000296_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..662d5267891576db0f884e3996354966bc730c37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000296_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00182:0.169569,(AS2_ACLBLIBL_00248:0.0924403,(KBS0714_MOLHKGIG_00136:0.0131934,(SA211_MHAAABBN_02150:0.00672451,TT9_LFPAFLNI_00144:5e-09)0.866:0.0111677)0.952:0.0528819)1:0.169569);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000297_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000297_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..872773b144df85be1620e2245fca4bf849b1d883
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000297_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00185:0.0945764,(AS2_ACLBLIBL_00250:0.0040315,((KBS0714_MOLHKGIG_00135:0,SA211_MHAAABBN_02149:0):0.00499701,TT9_LFPAFLNI_00143:5e-09):0.00265151):0.0945764);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000299_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000299_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b7cb7d7f76dc97957f75bfb2f4c18a7479a35e2d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000299_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00651:0.873897,(AS2_ACLBLIBL_00254:0.234325,(TT9_LFPAFLNI_00139:0.0240406,(KBS0714_MOLHKGIG_00131:5e-09,SA211_MHAAABBN_02145:0.00478493)0.928:5e-09)0.852:5e-09)1:0.873897);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000302_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000302_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0bdff6c2a5c3652285376208ef106eb482ffc24a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000302_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00194:0.0233356,(AS2_ACLBLIBL_00260:0.115012,(KBS0714_MOLHKGIG_00125:0.0232797,(SA211_MHAAABBN_02139:0.00647329,TT9_LFPAFLNI_00133:0.00318668)0.878:0.0269719)1:0.484681)1:0.0233356);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000304_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000304_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..681974a01fe3a54bf7489a5b5208ef2faf75fe46
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000304_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00196:0.09257,(AS2_ACLBLIBL_00262:0.0461994,(KBS0714_MOLHKGIG_00123:0.0461355,(SA211_MHAAABBN_02137:5e-09,TT9_LFPAFLNI_00131:0.062965)0.453:0.0281348)0.968:0.101598)1:0.09257);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000307_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000307_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8fa843ab81355960ea21b9629cd5d2f885a96314
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000307_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00203:0.194908,(AS2_ACLBLIBL_00271:0.0947221,(TT9_LFPAFLNI_00121:0.0035663,(SA211_MHAAABBN_02129:0.00665947,KBS0714_MOLHKGIG_00116:0.016738)0.596:6e-09)0.995:0.100537)1:0.194908);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000309_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000309_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fec233cae6345f0af22221fafc15c329c8873e5c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000309_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00218:0.0714035,(AS2_ACLBLIBL_00277:0.0353534,(KBS0714_MOLHKGIG_00113:0,SA211_MHAAABBN_02126:0,TT9_LFPAFLNI_00108:0):0.0974827):0.0714035);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000311_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000311_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..03f52c058c1abfd227171cb7e649cf83d29bbad6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000311_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00220:0.278215,(AS2_ACLBLIBL_00279:0.103004,(TT9_LFPAFLNI_00106:0.00299943,(KBS0714_MOLHKGIG_00111:5e-09,SA211_MHAAABBN_02124:0.0030064)0.752:5e-09)0.998:0.124264)1:0.278215);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000317_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000317_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..03195060f9ced00c59efb62201a958c99030cf6a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000317_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00232:0.280609,(AS2_ACLBLIBL_00286:0.155976,(TT9_LFPAFLNI_00099:5e-09,(SA211_MHAAABBN_02117:0.00691936,KBS0714_MOLHKGIG_00104:0.0138719)0.909:0.0175703)0.998:0.172312)1:0.280609);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000318_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000318_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b3925190931113f9d15a6a0c4be72ed69fec2948
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000318_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00233:0.10112,(AS2_ACLBLIBL_00287:0.0454889,(KBS0714_MOLHKGIG_00103:0.010078,(SA211_MHAAABBN_02116:0.00324618,TT9_LFPAFLNI_00098:0.0129354)0.812:0.00606098)0.999:0.104234)1:0.10112);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000319_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000319_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..41a989fa6e37642e0b7280447ce456749e0ccf9f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000319_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00234:0.0824927,(AS2_ACLBLIBL_00288:0.0475527,(TT9_LFPAFLNI_00097:0.0111383,(KBS0714_MOLHKGIG_00102:0.00553736,SA211_MHAAABBN_02115:5e-09)0.29:5e-09)0.961:0.0572682)1:0.0824927);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000320_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000320_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..28fdfb2d10024a95778a0d64781bb88211aa6e83
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000320_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00235:0.192437,(AS2_ACLBLIBL_00289:5e-09,(SA211_MHAAABBN_02114:5e-09,(KBS0714_MOLHKGIG_00101:5e-09,TT9_LFPAFLNI_00096:0.0162854)0.922:0.01619)0.936:0.0498763)1:0.192437);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000322_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000322_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0cfc5bf9e93d422d91fe44cd8690d2c88c1a5d02
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000322_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00238:0.0853837,(AS2_ACLBLIBL_00293:0.207122,((KBS0714_MOLHKGIG_00098:0,TT9_LFPAFLNI_00093:0):5e-09,SA211_MHAAABBN_02111:0.0131183):0.193888):0.0853837);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000324_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000324_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..baa845b8c0bc381651a54945de0fd47b5f702b3d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000324_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00240:0.056131,(AS2_ACLBLIBL_00295:0.118441,(KBS0714_MOLHKGIG_00096:0.00534235,(SA211_MHAAABBN_02109:5e-09,TT9_LFPAFLNI_00091:0.00299448)0.863:0.00965796)0.997:0.077794)1:0.056131);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000326_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000326_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5ea34638089aaea29b37cc5c178145b397140aea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000326_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00242:0.305661,(AS2_ACLBLIBL_00297:0.154895,(SA211_MHAAABBN_02107:0.0297839,(KBS0714_MOLHKGIG_00094:5e-09,TT9_LFPAFLNI_00089:0.00587755)0.88:5e-09)0.999:0.320202)1:0.305661);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000327_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000327_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ac73199ff924dbcc26a4cbba46f4ccae263a80f6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000327_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00243:0.120567,(AS2_ACLBLIBL_00298:0.0573284,(SA211_MHAAABBN_02106:0.00892396,(KBS0714_MOLHKGIG_00093:0.00146786,TT9_LFPAFLNI_00088:5e-09)0.95:0.0103531)0.992:0.0375026)1:0.120567);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000334_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000334_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9b0102254e731f5f9588f3508c0f3f5f135c2076
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000334_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00250:0.259677,((SA211_MHAAABBN_02099:0.00238123,TT9_LFPAFLNI_00081:5e-09)0.905:0.0168689,(AS2_ACLBLIBL_00305:0.0361702,KBS0714_MOLHKGIG_00086:0.0081876)0.637:0.00500821)1:0.259677);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000335_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000335_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3cfc6e083043f9f55ac669a74c2ab3ba18d16402
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000335_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00251:0.257663,(AS2_ACLBLIBL_00307:0.112752,(KBS0714_MOLHKGIG_00084:0.020486,(SA211_MHAAABBN_02097:0,TT9_LFPAFLNI_00079:0):0.00712058):0.0494506):0.257663);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000339_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000339_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e7d03fdf212dbb0ed7b9829da1f81aaf1c7a6c39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000339_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00255:0.194519,(AS2_ACLBLIBL_00314:0.101092,(KBS0714_MOLHKGIG_00079:0.0287554,(SA211_MHAAABBN_02092:0,TT9_LFPAFLNI_00073:0):0.00728075):0.0999786):0.194519);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000340_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000340_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ab26bc2050aff51a5fc3cffdecbacbf0e60be855
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000340_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00256:0.181184,(AS2_ACLBLIBL_00315:0.0720153,(KBS0714_MOLHKGIG_00078:0.0161606,(SA211_MHAAABBN_02091:0,TT9_LFPAFLNI_00072:0):0.016553):0.102898):0.181184);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000341_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000341_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8bd606d3cd63f96c29bab5b4ef92bc7edf2202fc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000341_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00257:0.0879547,(AS2_ACLBLIBL_00316:0.0343331,(KBS0714_MOLHKGIG_00077:5e-09,(SA211_MHAAABBN_02090:0.00757203,TT9_LFPAFLNI_00071:0.00753228)0.795:0.00751618)0.681:0.0218153)1:0.0879547);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000344_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000344_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f91e809d79b47aa3c08e7b821b013c813688f378
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000344_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00262:0.0132092,(AS2_ACLBLIBL_00320:0.0459298,((KBS0714_MOLHKGIG_00072:0,SA211_MHAAABBN_02085:0):5e-09,TT9_LFPAFLNI_00066:0.00530634):0.0374047):0.0132092);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000345_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000345_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a946d31cfa54c658338a66316b546ba5a90fffe2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000345_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00263:0.0983498,(AS2_ACLBLIBL_00321:0.291632,(TT9_LFPAFLNI_00065:0.0198372,(SA211_MHAAABBN_02084:0.0293046,KBS0714_MOLHKGIG_00071:0.0142987)0.435:0.00857201)0.999:0.152309)1:0.0983498);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000347_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000347_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a6647fe468201c2332b5336cb773e7a605a7403b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000347_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00265:0.147106,(AS2_ACLBLIBL_00323:0.339084,(SA211_MHAAABBN_02082:0.0172604,(KBS0714_MOLHKGIG_00069:0.0160863,TT9_LFPAFLNI_00063:0.00996742)0.798:0.00924649)1:0.207267)1:0.147106);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000351_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000351_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..94bf726f2820dbe98ec52d9a8b6beca54dc57ca5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000351_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00274:0.0378614,(AS2_ACLBLIBL_00333:0.20336,(KBS0714_MOLHKGIG_00062:0.00312099,(SA211_MHAAABBN_02075:0.00947628,TT9_LFPAFLNI_00057:0.00314765)0.745:0.00318142)1:0.255438)1:0.0378614);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000352_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000352_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cbad974a6971b61e168f97ee63c652b428fd9d31
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000352_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00275:0.0349221,(AS2_ACLBLIBL_00334:0.0187596,((KBS0714_MOLHKGIG_00061:0,TT9_LFPAFLNI_00056:0):5e-09,SA211_MHAAABBN_02074:0.00932753):0.0292382):0.0349221);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000354_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000354_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..42f2e35e181d764c01efed68fcb4cc2f985b100c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000354_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00277:0.16741,(AS2_ACLBLIBL_00337:0.0575252,(KBS0714_MOLHKGIG_00058:0.00780026,(SA211_MHAAABBN_02071:0.0056242,TT9_LFPAFLNI_00053:0.00140212)0.746:0.00203306)1:0.0795924)1:0.16741);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000355_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000355_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..612766d0d6fddc7037806655975e929f490a31c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000355_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00278:0.192732,(SA211_MHAAABBN_02070:0.00298778,(AS2_ACLBLIBL_00338:0.135539,(KBS0714_MOLHKGIG_00057:0.0026836,TT9_LFPAFLNI_00052:0.00267826)0.778:5e-09)0.084:0.00248432)1:0.192732);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000357_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000357_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fb0b8e78585ef0627366cb73270adfacf73af5ad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000357_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00281:0.0521174,(AS2_ACLBLIBL_00342:0.0265246,(SA211_MHAAABBN_02068:5e-09,(KBS0714_MOLHKGIG_00055:0.00692975,TT9_LFPAFLNI_00050:5e-09)0.75:0.00345597)0.999:0.0476009)1:0.0521174);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000358_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000358_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0a379b682a9099479b5008d3f06e9c9fc1e6dbc5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000358_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00282:0.00797819,(SA211_MHAAABBN_02067:0.00423009,(KBS0714_MOLHKGIG_00054:0.0022256,(AS2_ACLBLIBL_00344:0.114345,TT9_LFPAFLNI_00049:0.00820348)0.789:0.00362992)0.689:0.0040129)1:0.00797819);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000359_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000359_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e5e2c6b648f8187df4276be0198bf3961f68879a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000359_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00295:0.242476,(AS2_ACLBLIBL_00348:0.193746,(KBS0714_MOLHKGIG_00047:0.0108019,(SA211_MHAAABBN_02060:0.0104044,TT9_LFPAFLNI_00042:0.017401)0.59:0.0105924)0.999:0.195259)1:0.242476);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000360_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000360_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..99c46a2c76f99ba1e1be516b727b9efe88a05cfe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000360_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00294:0.207845,(AS2_ACLBLIBL_00349:0.145257,((KBS0714_MOLHKGIG_00046:0,SA211_MHAAABBN_02059:0):5e-09,TT9_LFPAFLNI_00041:0.0116531):0.0773094):0.207845);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000367_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000367_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..470f0d42202be0730542d239c8ffed9abec068c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000367_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00302:0.0272878,(AS2_ACLBLIBL_00361:0.0959516,(TT9_LFPAFLNI_00034:0.00862329,(KBS0714_MOLHKGIG_00039:5e-09,SA211_MHAAABBN_02052:0.00423473)0.844:5e-09)0.97:0.0502468)1:0.0272878);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000369_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000369_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5d5348190a42952f307d5cd5f28cddacd8709270
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000369_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00463:0.0965653,(AS2_ACLBLIBL_00365:0.0947443,(KBS0714_MOLHKGIG_00033:5e-09,(TT9_LFPAFLNI_00032:0.00456754,SA211_MHAAABBN_02050:5e-09)0.234:0.00455617)1:0.116082)1:0.0965653);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000370_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000370_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4cfd2946d035fb7ff3bd2eadd8eabb84865ce97d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000370_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00304:0.0664401,(AS2_ACLBLIBL_00366:0.020539,(KBS0714_MOLHKGIG_00032:5e-09,(SA211_MHAAABBN_02049:0.0030909,TT9_LFPAFLNI_00031:0.00615684)0.396:0.00306956)0.879:0.0112394)1:0.0664401);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000373_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000373_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cf9881e1712261b6bc2bb1fa2cc676cc21d327a6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000373_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00356:0.0861282,(AS2_ACLBLIBL_00374:0.0137495,(TT9_LFPAFLNI_00022:0.00199727,(KBS0714_MOLHKGIG_00022:0.00217986,SA211_MHAAABBN_02040:0.00217033)0.884:0.00453288)0.163:0.0063618)1:0.0861282);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000375_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000375_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a6b22f6bcb975359abecd3657783611c82b5bba1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000375_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00358:0.171511,(AS2_ACLBLIBL_00376:0.116401,(KBS0714_MOLHKGIG_00020:0.00653245,(SA211_MHAAABBN_02038:0.0114431,TT9_LFPAFLNI_00020:0.0107823)0.963:0.0180848)0.988:0.0716335)1:0.171511);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000376_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000376_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..29507bb1fd675ed62be7f6371a91abd78f88409c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000376_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00359:0.306662,(AS2_ACLBLIBL_00377:0.228316,(SA211_MHAAABBN_02037:0.0262911,(KBS0714_MOLHKGIG_00019:0.00999888,TT9_LFPAFLNI_00019:0.0260827)0.478:0.00663781)0.991:0.147227)1:0.306662);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000377_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000377_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ff5ce7e69a14b1f760fd1343964a14995505cfc9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000377_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00360:0.0511346,(AS2_ACLBLIBL_00379:0.0516466,(SA211_MHAAABBN_02036:0.00453493,(KBS0714_MOLHKGIG_00018:0.00453666,TT9_LFPAFLNI_00018:0.00454608)0.675:6e-09)0.963:0.0418007)1:0.0511346);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000378_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000378_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b61076bfa62f2ef52aba521f6a2f4692f9a656e8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000378_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00361:0.115399,(AS2_ACLBLIBL_00380:0.063982,(TT9_LFPAFLNI_00017:5e-09,(KBS0714_MOLHKGIG_00017:0.0102753,SA211_MHAAABBN_02035:0.010357)0:5e-09)0.868:0.0510506)1:0.115399);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000380_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000380_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5318512e55685a5bfb37ce36895cabc756371ae9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000380_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00363:0.0124186,(AS2_ACLBLIBL_00382:0.0331841,(KBS0714_MOLHKGIG_00015:0,SA211_MHAAABBN_02033:0,TT9_LFPAFLNI_00015:0):0.0456467):0.0124186);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000381_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000381_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f17a6122755d0f014f4801ccd54a53dd8e05c006
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000381_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00364:0.299747,(AS2_ACLBLIBL_00383:0.131603,(SA211_MHAAABBN_02032:0.0116936,(KBS0714_MOLHKGIG_00014:0.00242322,TT9_LFPAFLNI_00014:0.00236226)0.854:0.0131167)0.991:0.131453)1:0.299747);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000382_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000382_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2df0190fe6ff5e70da5d5e1ece851fe721be7732
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000382_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02182:0.0377387,(AS2_ACLBLIBL_00385:0.20328,(TT9_LFPAFLNI_00613:0.0193213,(KBS0714_MOLHKGIG_00643:0.005533,SA211_MHAAABBN_00380:0.00831088)0.919:5e-09)0.981:0.0522775)1:0.0377387);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000383_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000383_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..16c5fce82bb069d8ba676e2d8446e1b098b94cd7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000383_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02181:0.149491,(AS2_ACLBLIBL_00386:0.0685417,(TT9_LFPAFLNI_00011:5e-09,(SA211_MHAAABBN_02029:0.0115118,KBS0714_MOLHKGIG_00011:0.00384383)0.829:0.00377888)0.946:0.0525377)1:0.149491);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000386_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000386_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4d436aafa808b494bd2e8e0fb1ae3961b1c3cbb6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000386_tree.txt
@@ -0,0 +1 @@
+(((AS2_ACLBLIBL_00408:0.096765,TT9_LFPAFLNI_00595:5e-09)0.283:0.00333113,KBS0714_MOLHKGIG_00636:0.00333991)0.582:8.17685e-05,(KD337_NAFOICDF_02193:0.0232575,KD337_NAFOICDF_02192:0.0046953)0.582:8.17685e-05);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000388_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000388_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..965a8c883f2b9491f356989b12158c0af3ec7268
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000388_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00369:0.124459,(AS2_ACLBLIBL_00417:0.0593308,(KBS0714_MOLHKGIG_00007:5e-09,(SA211_MHAAABBN_02012:0,TT9_LFPAFLNI_00007:0):0.00571276):0.0982439):0.124459);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000389_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000389_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..dee7827042e5b0eff19c695745a7fcffef1d1f55
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000389_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00370:0.0434789,(AS2_ACLBLIBL_00418:0.0215076,(SA211_MHAAABBN_02011:0.00110173,(KBS0714_MOLHKGIG_00006:0.00229181,TT9_LFPAFLNI_00006:5e-09)0.36:5e-09)0.999:0.0245563)1:0.0434789);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000393_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000393_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..25c3a882bf1b3c8c7313a442cc6a070329c6dc15
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000393_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00375:0.0572697,(AS2_ACLBLIBL_00422:0.0171598,(KBS0714_MOLHKGIG_00002:0,SA211_MHAAABBN_02007:0,TT9_LFPAFLNI_00002:0):0.0241566):0.0572697);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000395_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000395_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e34f627ecaf3a156ed019b186693ce3880dd877b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000395_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00377:0.0107116,(AS2_ACLBLIBL_00424:0.0217085,(KBS0714_MOLHKGIG_02312:0,SA211_MHAAABBN_02005:0,TT9_LFPAFLNI_02253:0):0.0220326):0.0107116);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000396_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000396_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..db98d12926f2b2488860bfa39efea4656f6c6bae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000396_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00378:0.265501,(AS2_ACLBLIBL_00425:0.0610506,(KBS0714_MOLHKGIG_02311:0.0262538,(SA211_MHAAABBN_02004:0,TT9_LFPAFLNI_02252:0):0.0208383):0.0342789):0.265501);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000398_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000398_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a71a58f1550a9fb910acaff90673771d4b9c0896
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000398_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00380:0.0710097,((SA211_MHAAABBN_02002:0.00208593,TT9_LFPAFLNI_02250:0.00493228)0.938:0.0269187,(AS2_ACLBLIBL_00427:0.018644,KBS0714_MOLHKGIG_02309:5e-09)0.975:0.0358532)1:0.0710097);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000400_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000400_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d044dbcacad288991795e7e41f3593f723b5fcf1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000400_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00382:0.130709,(AS2_ACLBLIBL_00429:0.0412573,(SA211_MHAAABBN_02000:5e-09,(KBS0714_MOLHKGIG_02307:0.0084784,TT9_LFPAFLNI_02248:6e-09)0.814:0.00422773)0.924:0.0348261)1:0.130709);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000402_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000402_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b1a3aa97522792097bc4d233911e66c60b8a86d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000402_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00385:0.0650786,(AS2_ACLBLIBL_00433:0.0177249,(KBS0714_MOLHKGIG_02304:0,SA211_MHAAABBN_01997:0,TT9_LFPAFLNI_02245:0):0.0600876):0.0650786);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000403_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000403_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..56ac4b59ed44d55ce01e761ac9a8d32964601863
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000403_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00387:0.204939,(AS2_ACLBLIBL_00435:0.314776,(KBS0714_MOLHKGIG_02302:0.00971892,(SA211_MHAAABBN_01995:0.00458726,TT9_LFPAFLNI_02243:0.0159027)0.954:0.0143438)0.978:0.0874093)1:0.204939);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000404_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000404_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..85c7e8d7e2ff74bda4dbee145064cd401841942d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000404_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00388:0.16458,(AS2_ACLBLIBL_00436:0.0409479,(TT9_LFPAFLNI_02242:0.0050456,(KBS0714_MOLHKGIG_02301:5e-09,SA211_MHAAABBN_01994:0.00166477)0.886:0.00512608)0.996:0.0484654)1:0.16458);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000405_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000405_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6d8b929ef12caae5a688ffd0f161466267b907a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000405_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00390:0.0586942,(AS2_ACLBLIBL_00437:0.0375652,(SA211_MHAAABBN_01992:0.0105126,(KBS0714_MOLHKGIG_02299:0.00208822,TT9_LFPAFLNI_02240:5e-09)0.902:5e-09)0.992:0.0369371)1:0.0586942);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000412_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000412_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..873746b791ee8ca4cc274de1e3a8651675bf6a19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000412_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00398:0.0252408,(AS2_ACLBLIBL_00446:0.00914307,(KBS0714_MOLHKGIG_02292:0,SA211_MHAAABBN_01984:0,TT9_LFPAFLNI_02232:0):0.0199007):0.0252408);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000413_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000413_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3afffd4fb84e6b911e3fe68eeb2ad96b81234675
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000413_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00399:0.0651907,(AS2_ACLBLIBL_00447:0.00556226,(KBS0714_MOLHKGIG_02291:0.00529677,(SA211_MHAAABBN_01983:5e-09,TT9_LFPAFLNI_02231:0.0053136)0.394:5e-09)0.845:0.0103979)1:0.0651907);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000414_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000414_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0cbe3f6cd75d4b87bd7180da52be884e5e81e3e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000414_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00448:0,KBS0714_MOLHKGIG_02290:0,SA211_MHAAABBN_01982:0,TT9_LFPAFLNI_02230:0):0.00621232,KD337_NAFOICDF_00400:0.00621232);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000416_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000416_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..51c1ebca2b60bc9697ad03db78e32e314e412dc1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000416_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00403:0.082108,(AS2_ACLBLIBL_00450:0.0316553,(SA211_MHAAABBN_01978:0.0132545,(KBS0714_MOLHKGIG_02287:0.00268402,TT9_LFPAFLNI_02226:0.00791898)0.853:0.00552156)0.95:0.0238265)1:0.082108);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000418_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000418_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e4bad26ddebcbab5ab60ac5255d66bf96bff9bf4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000418_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00405:0.0648952,(AS2_ACLBLIBL_00452:0.00210652,(KBS0714_MOLHKGIG_02285:0.00472636,(SA211_MHAAABBN_01976:0,TT9_LFPAFLNI_02224:0):5e-09):0.00261979):0.0648952);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000425_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000425_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..aa583581100bf469c8c973fa47e4b99e6a1d97d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000425_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00431:0.00224231,(AS2_ACLBLIBL_00476:0.0204818,(KBS0714_MOLHKGIG_02255:0.00405698,(SA211_MHAAABBN_01955:0,TT9_LFPAFLNI_02186:0):5e-09):0.00778458):0.00224231);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000426_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000426_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90075c6d5fa0d5b114bf7e3a338e214ed6f4bc8e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000426_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00432:0.0400424,(KBS0714_MOLHKGIG_02254:0.00149959,(AS2_ACLBLIBL_00477:0.024235,(SA211_MHAAABBN_01954:0.0158877,TT9_LFPAFLNI_02185:0.00397854)0.828:5e-09)0.72:0.0025005)1:0.0400424);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000427_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000427_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3cafb465d4284476c78f1d989337afa4271ff0b6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000427_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01297:0.172831,(AS2_ACLBLIBL_00496:0.278057,(KBS0714_MOLHKGIG_02201:0,SA211_MHAAABBN_01914:0,TT9_LFPAFLNI_02145:0):0.362648):0.172831);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000429_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000429_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d483eaf7be8e4db61153feb4afbc386a1735bf7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000429_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00511:0.34653,(AS2_ACLBLIBL_00500:0.0973818,(KBS0714_MOLHKGIG_02245:0,SA211_MHAAABBN_01947:0,TT9_LFPAFLNI_02177:0):0.0765829):0.34653);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000430_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000430_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4cb23cbd3c8c6f841c7674dc10466b4c8088662f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000430_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02088:0.309736,(AS2_ACLBLIBL_00502:1.06312,(SA211_MHAAABBN_01946:5e-09,(KBS0714_MOLHKGIG_02244:0.00365792,TT9_LFPAFLNI_02176:6e-09)0.853:0.00364258)0.685:0.073891)1:0.309736);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000432_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000432_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6f893c5dfcaef6a4772669cb8f79d492418ccba5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000432_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00442:0.00276939,((KBS0714_MOLHKGIG_02239:0.0111266,TT9_LFPAFLNI_02171:0.00553289)0.761:0.00184643,(AS2_ACLBLIBL_00506:0.0681571,SA211_MHAAABBN_01941:0.00369214)0.885:6e-09)1:0.00276939);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000436_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000436_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..98a71402998762f02317d4f5309f3836461b646d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000436_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00467:0.161077,(AS2_ACLBLIBL_00525:0.109406,(TT9_LFPAFLNI_02155:5e-09,(KBS0714_MOLHKGIG_02216:0.00739117,SA211_MHAAABBN_01929:0.00735351)0.978:0.0260629)0.999:0.146807)1:0.161077);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000437_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000437_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9a6b9e0a4f72207076b424f123ba0156c434f5ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000437_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00465:0.220046,(AS2_ACLBLIBL_00527:0.343558,(TT9_LFPAFLNI_02158:0.00439019,(SA211_MHAAABBN_01932:0.0268966,KBS0714_MOLHKGIG_02219:5e-09)0.75:0.00447401)1:0.321392)1:0.220046);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000438_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000438_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a7118b1b9be294fd8d4334ededcd9ca4198062b9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000438_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00468:0.144715,(AS2_ACLBLIBL_00537:0.0450336,(KBS0714_MOLHKGIG_02208:0.00287391,(SA211_MHAAABBN_01921:0,TT9_LFPAFLNI_02152:0):0.0181684):0.0524191):0.144715);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000440_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000440_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..33a722d0c09542973a29a6de5a5f4d522dfa32a5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000440_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00472:0.121734,(AS2_ACLBLIBL_00541:0.14822,(KBS0714_MOLHKGIG_02202:0,SA211_MHAAABBN_01915:0,TT9_LFPAFLNI_02146:0):0.0599661):0.121734);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000441_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000441_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6d0b2c23d4b8f600102eb066ed934024e98eee7a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000441_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01787:0.611684,(AS2_ACLBLIBL_00542:0.0620262,(KBS0714_MOLHKGIG_02200:0,SA211_MHAAABBN_01913:0,TT9_LFPAFLNI_02144:0):0.217436):0.611684);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000444_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000444_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e03a0410e8761209ed73dd96177891610a58d23c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000444_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00482:0.399686,(AS2_ACLBLIBL_00546:0.214186,(SA211_MHAAABBN_01907:5e-09,(KBS0714_MOLHKGIG_02194:0.0266783,TT9_LFPAFLNI_02138:6e-09)0.372:0.00528832)0.809:0.0804259)1:0.399686);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000445_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000445_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..03fa7e3312c484d968dbd0f76ada232ec0383a71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000445_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00480:0.437123,(AS2_ACLBLIBL_00547:0.0397178,(KBS0714_MOLHKGIG_02197:0,SA211_MHAAABBN_01910:0,TT9_LFPAFLNI_02141:0):5e-09):0.437123);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000446_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000446_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..01106d2f146d43402ba66c6f3c0b193a8f0ffbde
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000446_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00479:0.388172,((KBS0714_MOLHKGIG_02196:0,TT9_LFPAFLNI_02140:0):0.00200408,(AS2_ACLBLIBL_00548:0.0308236,SA211_MHAAABBN_01909:0.0192051):0.00927799):0.388172);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000447_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000447_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..dfb18a42ba042ae639db0c08144e99b640fc78be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000447_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00478:0.254845,(AS2_ACLBLIBL_00549:0.00864649,(TT9_LFPAFLNI_02139:0.000623869,(KBS0714_MOLHKGIG_02195:0.00480934,SA211_MHAAABBN_01908:0.00366747)0.953:0.00669565)0.92:0.0159165)1:0.254845);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000449_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000449_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..615a6753e0f447c7d5334f78fbcfc31ef92d33c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000449_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00484:0.181209,(AS2_ACLBLIBL_00557:0.0369303,((KBS0714_MOLHKGIG_02189:0,SA211_MHAAABBN_01903:0):0.00541655,TT9_LFPAFLNI_02134:5e-09):0.103627):0.181209);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000451_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000451_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ed7b71e866187a76af3d50c68b2436a0c1d9768f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000451_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00489:0.133593,(AS2_ACLBLIBL_00563:0.0958645,(KBS0714_MOLHKGIG_02186:0.00203017,(SA211_MHAAABBN_01900:0.00341472,TT9_LFPAFLNI_02131:0.0034354)0.749:0.0120423)0.97:0.072419)1:0.133593);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000453_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000453_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ef85fb2ecfd276605503acbd5f4e349fca7201b0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000453_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00492:0.304894,(AS2_ACLBLIBL_00567:0.256101,(TT9_LFPAFLNI_02128:0.00263786,(SA211_MHAAABBN_01897:0.0182602,KBS0714_MOLHKGIG_02183:0.0187002)0.768:0.00636125)1:0.327282)1:0.304894);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000454_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000454_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..47887c5a3b6333481c1266f17f23ba6894a18134
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000454_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00495:0.0729596,(AS2_ACLBLIBL_00568:0.29918,(SA211_MHAAABBN_01896:0.0034419,(KBS0714_MOLHKGIG_02182:0.0176202,TT9_LFPAFLNI_02127:0.0109388)0.734:0.0119182)1:0.233759)1:0.0729596);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000455_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000455_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f7f77cd14921479f998703c295cd3d0fa17929df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000455_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00496:0.140615,(AS2_ACLBLIBL_00569:0.110787,(SA211_MHAAABBN_01895:5e-09,(KBS0714_MOLHKGIG_02181:0.00783563,TT9_LFPAFLNI_02126:0.0077617)0.422:0.00779473)0.922:0.0514654)1:0.140615);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000456_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000456_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..164111ab88f1bbba1ddbb1388ff98149e16915df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000456_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00499:0.217705,(AS2_ACLBLIBL_00572:0.0991483,(TT9_LFPAFLNI_02125:0.0194883,(KBS0714_MOLHKGIG_02180:5e-09,SA211_MHAAABBN_01894:0.0132502)0.472:0.0118453)0.963:0.0932218)1:0.217705);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000457_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000457_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..656b88e03a178abc996413b7c1294e7044033342
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000457_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00500:0.138397,(AS2_ACLBLIBL_00573:0.041315,(TT9_LFPAFLNI_02124:5e-09,(KBS0714_MOLHKGIG_02179:5e-09,SA211_MHAAABBN_01893:0.00578222)0.815:0.0087089)0.975:0.0393025)1:0.138397);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000466_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000466_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4a2420235fecd2f01751a477cb9346aeda6515c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000466_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00586:0.201311,AS2_ACLBLIBL_00695:0.00710466):0.00154482,((KBS0714_MOLHKGIG_02088:0,SA211_MHAAABBN_01793:0):0.0137642,TT9_LFPAFLNI_02027:0.00981911):0.00154482);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000468_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000468_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..97e6fdc1f38601a2ba594379e4ac477a8b0c02de
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000468_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00517:0.136005,(AS2_ACLBLIBL_00594:0.0701851,(KBS0714_MOLHKGIG_02163:0.0104894,(SA211_MHAAABBN_01877:0,TT9_LFPAFLNI_02108:0):5e-09):0.0754787):0.136005);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000470_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000470_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7db380ba02ff5bf383ed47e25dd25dae25579291
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000470_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00521:0.14051,(AS2_ACLBLIBL_00599:0.211138,(TT9_LFPAFLNI_02103:0.0179321,(KBS0714_MOLHKGIG_02159:5e-09,SA211_MHAAABBN_01872:0.00441927)0.882:0.00943068)0.999:0.149047)1:0.14051);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000471_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000471_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8cb40039287f664909dc1889df68bb63123a556c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000471_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00522:0.166023,(AS2_ACLBLIBL_00600:0.194682,(KBS0714_MOLHKGIG_02158:0.0118828,(SA211_MHAAABBN_01871:0.0176106,TT9_LFPAFLNI_02101:0.0126416)0.909:0.0161886)0.997:0.100734)1:0.166023);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000473_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000473_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e50d6c61774915a661fddae03feaecef6944e9e3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000473_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00533:0.0687515,(AS2_ACLBLIBL_00609:0.0469244,(SA211_MHAAABBN_01867:0.00355878,(KBS0714_MOLHKGIG_02154:0.00884152,TT9_LFPAFLNI_02097:0.00265265)0.646:0.0017778)1:0.0366228)1:0.0687515);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000474_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000474_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f07440b61f09a2ff7e0c03ed33a2445bb6fc1de7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000474_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00534:0.0381437,(AS2_ACLBLIBL_00610:0.138389,(TT9_LFPAFLNI_02095:0.0124709,(KBS0714_MOLHKGIG_02152:0.0222174,SA211_MHAAABBN_01865:0.00245219)0.744:0.00233229)1:0.184287)1:0.0381437);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000476_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000476_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3f9c4b3fb3db511f481a22a247f18238789bd20a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000476_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00536:0.172816,(AS2_ACLBLIBL_00612:0.0818839,((KBS0714_MOLHKGIG_02150:0,SA211_MHAAABBN_01863:0):0.0161366,TT9_LFPAFLNI_02093:0.00447407):0.0503299):0.172816);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000481_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000481_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6191f64d969c15118afbe8e14a1910c8cee7acd4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000481_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00547:0.0275999,(AS2_ACLBLIBL_00622:0.078663,(KBS0714_MOLHKGIG_02147:0.00684997,(SA211_MHAAABBN_01855:5e-09,TT9_LFPAFLNI_02085:0.00564876)0.998:0.0270628)1:0.0930062)1:0.0275999);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000482_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000482_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..601d2a15552f394c3b8f69b428ada1af6d060d30
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000482_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00550:0.0744848,(KBS0714_MOLHKGIG_02146:0.329898,(AS2_ACLBLIBL_00626:1.00087,(SA211_MHAAABBN_01853:0,TT9_LFPAFLNI_02083:0):0.0718476):0.176468):0.0744848);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000483_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000483_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f10825cea145e7d413e8452c932ca343df8aedb2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000483_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00551:0.0150161,((SA211_MHAAABBN_01852:0.00490061,TT9_LFPAFLNI_02082:0.000615738)1:0.0994,(AS2_ACLBLIBL_00627:0.0344353,KBS0714_MOLHKGIG_02145:0.0377332)1:0.0814162)1:0.0150161);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000487_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000487_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..663870d171dc1fb08c5e61032a139883afe785dd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000487_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00557:0.136053,(AS2_ACLBLIBL_00633:0.0943391,(KBS0714_MOLHKGIG_02139:0,SA211_MHAAABBN_01847:0,TT9_LFPAFLNI_02077:0):0.0849584):0.136053);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000488_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000488_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6c59c25c2aa8e3482dec81d59a0014236a7e5f51
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000488_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00558:0.094961,(AS2_ACLBLIBL_00634:0.0668843,(KBS0714_MOLHKGIG_02138:0.00433816,(SA211_MHAAABBN_01846:0,TT9_LFPAFLNI_02076:0):0.00217744):0.0831674):0.094961);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000489_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000489_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..03adff15735bac112b44e61099853e4f9d2cc078
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000489_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00559:0.0926018,(AS2_ACLBLIBL_00635:0.063076,(KBS0714_MOLHKGIG_02137:0,SA211_MHAAABBN_01845:0,TT9_LFPAFLNI_02075:0):0.0441285):0.0926018);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000490_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000490_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8173071bbdb0ee5eba67e0baf48ce210b5846f5f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000490_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00560:0.0959607,(AS2_ACLBLIBL_00636:0.0348779,(KBS0714_MOLHKGIG_02136:5e-09,(SA211_MHAAABBN_01844:0,TT9_LFPAFLNI_02074:0):0.0146987):0.0344068):0.0959607);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000491_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000491_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f83cdfb6023d469644379d696fe26a4c55cb0aad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000491_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00561:0.191151,(AS2_ACLBLIBL_00638:0.0379881,(KBS0714_MOLHKGIG_02134:0.0200172,(SA211_MHAAABBN_01842:0.00382054,TT9_LFPAFLNI_02072:0.00383231)0.977:0.0320643)0.982:0.0671238)1:0.191151);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000492_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000492_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5ecc04509f3d818f687f3a7919f9b0c83d7d3877
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000492_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00563:0.0298859,(AS2_ACLBLIBL_00647:0.0465344,(SA211_MHAAABBN_01841:0.00538141,(KBS0714_MOLHKGIG_02133:0.00359892,TT9_LFPAFLNI_02071:0.00179233)0.946:0.00725697)0.965:0.0227189)1:0.0298859);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000498_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000498_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..65984b629cc27ae02b572a2e78ab2abddf948248
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000498_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00569:0.0170442,((KBS0714_MOLHKGIG_02127:0.0133634,TT9_LFPAFLNI_02065:0.0103962)0.965:0.017982,(AS2_ACLBLIBL_00653:0.0266391,SA211_MHAAABBN_01835:0.0107779)0.452:0.00351502)1:0.0170442);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000500_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000500_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1a431e1d73275c116d1de48cc73a95a9bd2ccc1b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000500_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00572:0.00983387,(AS2_ACLBLIBL_00655:0.10814,(SA211_MHAAABBN_01833:0.00951477,(KBS0714_MOLHKGIG_02125:0.0378289,TT9_LFPAFLNI_02063:0.00931741)0.893:5e-09)0.757:0.0185973)1:0.00983387);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000503_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000503_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..02a9573a34af442087adb8a4c3c97fcc6d444a8d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000503_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00577:0.120174,(AS2_ACLBLIBL_00660:0.149834,(KBS0714_MOLHKGIG_02120:0,SA211_MHAAABBN_01828:0,TT9_LFPAFLNI_02058:0):0.0665977):0.120174);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000506_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000506_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90cc656ce3066b0949a1b23336c4e0b5697bcee4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000506_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00580:0.326575,(AS2_ACLBLIBL_00663:0.175045,(SA211_MHAAABBN_01825:0.0100068,(TT9_LFPAFLNI_02055:0.0100385,KBS0714_MOLHKGIG_02117:5e-09)0.63:5e-09)0.779:0.0981643)1:0.326575);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000509_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000509_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4004c52db49cf5e631e635ebb0e27785182e5326
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000509_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00583:0.112301,(AS2_ACLBLIBL_00667:0.0833169,(TT9_LFPAFLNI_02051:0.0223408,(KBS0714_MOLHKGIG_02113:0.0114372,SA211_MHAAABBN_01820:0.019776)0.608:0.0133802)0.926:0.0599284)1:0.112301);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000512_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000512_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..414dc09fdb268f0ecfd7a0e20f7250df050323d7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000512_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00588:0.321309,(AS2_ACLBLIBL_00672:0.517615,((KBS0714_MOLHKGIG_02107:0,SA211_MHAAABBN_01814:0):0.00267476,TT9_LFPAFLNI_02047:5e-09):0.0545039):0.321309);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000513_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000513_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4cf92ca59e42f3727304f5d53702ee4820a27bf0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000513_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00589:0.13655,(AS2_ACLBLIBL_00673:0.0484408,(TT9_LFPAFLNI_02046:0.00307474,(KBS0714_MOLHKGIG_02106:0.00322772,SA211_MHAAABBN_01813:5e-09)0.758:0.00356868)0.999:0.104728)1:0.13655);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000516_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000516_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..92837b23b1509f62571ed29732162e8ddcdc15be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000516_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00591:0.489316,(AS2_ACLBLIBL_00676:0.186752,((KBS0714_MOLHKGIG_02103:0,SA211_MHAAABBN_01810:0):0.00818516,TT9_LFPAFLNI_02043:0.0101711):0.167679):0.489316);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000519_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000519_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d70163efed773a0d151fa883bf53154f2241f538
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000519_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00598:0.0102731,(AS2_ACLBLIBL_00683:0.043063,((SA211_MHAAABBN_01803:0.0342551,TT9_LFPAFLNI_02034:0.0460647)0.227:0.00559615,KBS0714_MOLHKGIG_02095:0.0328074)0.578:0.00587236)1:0.0102731);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000520_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000520_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ce3f64971c50d2297ad1b6c3ff4cc8223518e8af
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000520_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_02092:0.00956403,(KD337_NAFOICDF_00413:0.142612,KD337_NAFOICDF_00937:1.53012)0.961:0.229955)0.863:0.00697788,(AS2_ACLBLIBL_00686:0.0116311,KD337_NAFOICDF_00602:0.0276556)0.863:0.00697788);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000521_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000521_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9549cc17295e7af5c674a5c998ac632b43cf735c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000521_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00606:0.00319934,(TT9_LFPAFLNI_02026:0.00463489,(AS2_ACLBLIBL_00696:0.0130749,(KBS0714_MOLHKGIG_02087:0,SA211_MHAAABBN_01792:0):0.00242709):0.00441808):0.00319934);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000523_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000523_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bb20619cae4e19aa2b20698dfd70cbf97d2b6995
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000523_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00608:0.00284409,((KBS0714_MOLHKGIG_02085:0,SA211_MHAAABBN_01790:0):0.0085366,(AS2_ACLBLIBL_00698:0.0114015,TT9_LFPAFLNI_02024:5e-09):0.00284124):0.00284409);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000525_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000525_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cc12d609d65f4ce3217768c2d1670071aa1751e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000525_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00610:0.00642428,(AS2_ACLBLIBL_00700:0.012618,((KBS0714_MOLHKGIG_02083:0,SA211_MHAAABBN_01788:0):5e-09,TT9_LFPAFLNI_02022:0.00630514):0.0192367):0.00642428);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000526_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000526_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3e5e0cd0172058ae8005e7c6f19e6b98b63f8fa0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000526_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00611:0.00889803,((KBS0714_MOLHKGIG_02082:0,SA211_MHAAABBN_01787:0):5e-09,(AS2_ACLBLIBL_00701:0.0178518,TT9_LFPAFLNI_02021:5e-09):0.00590013):0.00889803);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000527_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000527_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d8520586a12afcb1fee3aecfbcbfac1d94c2dff0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000527_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00613:0.00498257,((KBS0714_MOLHKGIG_02081:0,TT9_LFPAFLNI_02019:0):0.00495448,(AS2_ACLBLIBL_00703:0.00993926,SA211_MHAAABBN_01785:5e-09):5e-09):0.00498257);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000528_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000528_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e2b57502af391e8316fe63476156ba22a709e7fa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000528_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00614:0.00865615,((SA211_MHAAABBN_01784:0.0033866,TT9_LFPAFLNI_02018:0.00678309)0.845:5e-09,(KBS0714_MOLHKGIG_02080:0.0207589,AS2_ACLBLIBL_00704:0.0364431)0.246:5e-09)1:0.00865615);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000529_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000529_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d6e0ed4166f896aa909fdca5775327df80193dd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000529_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00726:0.0529811,(AS2_ACLBLIBL_00711:0.0903165,(KBS0714_MOLHKGIG_02055:0.00627078,(SA211_MHAAABBN_01761:5e-09,TT9_LFPAFLNI_01989:5e-09)0:5e-09)1:0.205656)1:0.0529811);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000530_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000530_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5671fb6686458624505677dc53bdd8efc32da8c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000530_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00715:0.104045,(TT9_LFPAFLNI_02213:0.325721,(TT9_LFPAFLNI_02173:0.00170846,(KBS0714_MOLHKGIG_02241:0.00170306,SA211_MHAAABBN_01943:0.00170358)0.83:5e-09)1:0.398827)1:0.104045);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000531_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000531_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..54d81707c5ecd6d34ea2bfcb2fd464b4aa915e1f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000531_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00554:0.0312824,(AS2_ACLBLIBL_00716:0.288232,(TT9_LFPAFLNI_02079:0.00959592,(KBS0714_MOLHKGIG_02141:0.0165277,SA211_MHAAABBN_01849:0.00705255)0.352:0.00677311)0.998:0.061046)1:0.0312824);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000532_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000532_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..da915cb517008cb1e6f2f2307f9d0dbe8ddd1fdd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000532_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00729:0.152744,(AS2_ACLBLIBL_00728:0.278222,AS2_ACLBLIBL_02365:0.0864523)0.877:0.0576136)0.988:0.0432156,(KBS0714_MOLHKGIG_00608:0.0427432,SA211_MHAAABBN_01768:0.0275979)0.988:0.0432156);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000533_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000533_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..01b435cf5785eaf129c4e81bf912b803b954a9c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000533_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00723:0.310184,(AS2_ACLBLIBL_00760:0.279181,(TT9_LFPAFLNI_01994:0.064386,(KBS0714_MOLHKGIG_02058:0.00920958,SA211_MHAAABBN_01764:0.00469288)0.985:0.0716632)0.912:0.0977894)1:0.310184);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000535_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000535_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b51d4deb683e0d3a2c3427bf934ab9ecc07bf802
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000535_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00728:0.0761183,(AS2_ACLBLIBL_00764:0.142388,(KBS0714_MOLHKGIG_02056:0.0150448,(SA211_MHAAABBN_01762:0,TT9_LFPAFLNI_01990:0):0.00437415):0.16793):0.0761183);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000539_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000539_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e096d9adb1549afa5d22aa3c54e4e7daa402accd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000539_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00747:0.00484145,((SA211_MHAAABBN_01743:0,TT9_LFPAFLNI_01971:0):0.0112684,(AS2_ACLBLIBL_00780:0.140547,KBS0714_MOLHKGIG_02036:0.00987293):0.00868582):0.00484145);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000541_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000541_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..34b75400b74bf1041976ed076697f81bfb2bd5ab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000541_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00782:0.518819,(SA211_MHAAABBN_00736:0.0122803,(TT9_LFPAFLNI_00966:5e-09,(KBS0714_MOLHKGIG_01022:5e-09,SA211_MHAAABBN_00737:0.0053597)0.953:0.0174833)0.759:0.0232864)1:0.518819);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000542_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000542_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..662bdf7c88bf7d202611ecb8106ca04c18e85c19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000542_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00749:0.00290921,((KBS0714_MOLHKGIG_02034:5e-09,SA211_MHAAABBN_01741:5e-09)0.906:0.00578743,(AS2_ACLBLIBL_00783:0.0429694,TT9_LFPAFLNI_01969:0.00412643)0.748:0.0026915)1:0.00290921);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000544_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000544_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b45720ee03520e2e66b3051d8dec8030d37ab192
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000544_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00752:0.0591663,(AS2_ACLBLIBL_00791:0.0296655,(KBS0714_MOLHKGIG_02028:0,SA211_MHAAABBN_01737:0,TT9_LFPAFLNI_01965:0):0.0349074):0.0591663);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000548_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000548_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..97b6cc99ba69425bb329160b4d1d00b148064ce8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000548_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02090:0.334611,(AS2_ACLBLIBL_00795:5e-09,(TT9_LFPAFLNI_01961:5e-09,(KBS0714_MOLHKGIG_02024:0.0165067,SA211_MHAAABBN_01733:6e-09)0.509:0.00656868)0.888:0.00658325)1:0.334611);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000549_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000549_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..17d5adc0b9c60b135ab185663681755666ec6622
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000549_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00757:0.0525974,(AS2_ACLBLIBL_00796:0.0429575,(SA211_MHAAABBN_01732:0.00658772,(KBS0714_MOLHKGIG_02023:0.00173097,TT9_LFPAFLNI_01960:0.00518585)0.34:0.00139252)0.903:0.00809137)1:0.0525974);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000552_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000552_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0fe1409281479662f81686fc9897c9802c51d1c4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000552_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00760:0.0185899,((KBS0714_MOLHKGIG_02020:0.0063762,SA211_MHAAABBN_01729:0.0213582)0.843:0.0144764,(AS2_ACLBLIBL_00802:0.453848,TT9_LFPAFLNI_01957:0.0167494)0.567:0.0201204)1:0.0185899);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000559_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000559_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f1616cd00cfdb5c42a7778bd7a7d4b3afd425d49
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000559_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00770:0.0352563,(AS2_ACLBLIBL_00833:0.0183973,(KBS0714_MOLHKGIG_02009:0,SA211_MHAAABBN_01719:0,TT9_LFPAFLNI_01947:0):0.0320741):0.0352563);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000560_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000560_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..602ac1555862af69a1dc905a3e43d33819da571a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000560_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00771:0.0115535,(AS2_ACLBLIBL_00834:0.0352938,(TT9_LFPAFLNI_01946:0.00897213,(KBS0714_MOLHKGIG_02008:0.00298368,SA211_MHAAABBN_01718:5e-09)0.912:5e-09)0.926:0.0179016)1:0.0115535);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000561_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000561_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4509089313f679c0ef2765f8b482ec8507ea84ff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000561_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00772:0.533691,(AS2_ACLBLIBL_00835:0.0909539,(TT9_LFPAFLNI_01945:5e-09,(KBS0714_MOLHKGIG_02007:0.0406391,SA211_MHAAABBN_01717:0.0131638)0.746:0.00657068)0.988:0.291724)1:0.533691);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000562_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000562_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6882f9dd7193c789165eac58ddb34d56aa27f8ed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000562_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00773:0.567894,(AS2_ACLBLIBL_00836:0.242224,(KBS0714_MOLHKGIG_02006:0.0387739,(SA211_MHAAABBN_01716:0.0212872,TT9_LFPAFLNI_01944:0.0221453)0.799:0.0122113)0.991:0.219839)1:0.567894);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000564_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000564_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec4f79d6cc18760d6f398c219089f05ecb13e075
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000564_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00776:0.100741,(AS2_ACLBLIBL_00839:0.0319421,(KBS0714_MOLHKGIG_02003:0.000341227,(SA211_MHAAABBN_01713:0.0126149,TT9_LFPAFLNI_01941:0.0125553)0.621:0.00700393)0.989:0.0485822)1:0.100741);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000565_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000565_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a74539fbab43e8fb1d4a7be8e3a7f790d3970037
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000565_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00793:0.229685,(AS2_ACLBLIBL_00857:0.0991431,(KBS0714_MOLHKGIG_02000:0,SA211_MHAAABBN_01694:0,TT9_LFPAFLNI_01926:0):0.121925):0.229685);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000569_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000569_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d6fc6de1a050b6f7f9870ba4ec8296b3ec4a901e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000569_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00801:0.009759,(AS2_ACLBLIBL_00863:0.106953,(SA211_MHAAABBN_01688:5e-09,(KBS0714_MOLHKGIG_01994:0.00787141,TT9_LFPAFLNI_01920:0.00259126)0.82:0.0026111)0.996:0.0454817)1:0.009759);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000571_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000571_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c79067a64ba7f005f5ea1e880b2dd5f4e20088a3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000571_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00803:0.00615878,(AS2_ACLBLIBL_00865:0.0298204,(TT9_LFPAFLNI_01918:0.00608202,(KBS0714_MOLHKGIG_01992:0.00825509,SA211_MHAAABBN_01686:0.00821886)0.753:0.00356145)0.933:0.0152502)1:0.00615878);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000573_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000573_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eafe0b856fad26b5a0bf5d00da226b062fc6dba0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000573_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01757:0.112149,(AS2_ACLBLIBL_00867:0.0361719,(KBS0714_MOLHKGIG_01990:0.00741184,(SA211_MHAAABBN_01684:0.0147176,TT9_LFPAFLNI_01916:5e-09)0.741:0.00238551)0.994:0.0483706)1:0.112149);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000576_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000576_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a4d19f7e6767349768b91da97aff0305cfe12556
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000576_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00807:0.0124104,((AS2_ACLBLIBL_00871:0,KBS0714_MOLHKGIG_01986:0):5e-09,(SA211_MHAAABBN_01680:0.00305158,TT9_LFPAFLNI_01912:0.00305687):0.00305319):0.0124104);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000577_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000577_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4e7ea8233069261fc465ed48f6094d46fe629987
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000577_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00809:0.00277299,(AS2_ACLBLIBL_00873:0.0942669,((KBS0714_MOLHKGIG_01984:0,TT9_LFPAFLNI_01910:0):0.00536787,SA211_MHAAABBN_01678:0.00235617):0.00508651):0.00277299);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000580_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000580_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b220c4d3a61689125222faab407a362ca376c89e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000580_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00813:0.00625746,(AS2_ACLBLIBL_00878:0.249999,((KBS0714_MOLHKGIG_01980:0,TT9_LFPAFLNI_01906:0):0.00345424,SA211_MHAAABBN_01674:0.00689508):0.0122237):0.00625746);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000583_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000583_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b53159d017ec651a5e50489136ecf5c3cb525787
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000583_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00826:0.310623,(AS2_ACLBLIBL_00884:0.298027,(KBS0714_MOLHKGIG_01974:0.0156224,(SA211_MHAAABBN_01668:0.0216271,TT9_LFPAFLNI_01900:0.0216488)0.712:0.00574648)0.875:0.106898)1:0.310623);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000590_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000590_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..04cbc58cd3403e9c1312d7d62bf9ad2f931d3fbd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000590_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00439:0.936184,KD337_NAFOICDF_00834:0.424045)0.944:0.110952,(TT9_LFPAFLNI_01889:0.00759936,(AS2_ACLBLIBL_00894:0.0234709,KBS0714_MOLHKGIG_01963:0.00430492)0.572:0.0107431)0.944:0.110952);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000597_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000597_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2e35df48d02d41172bde9bd57039a963ec2800a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000597_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00852:0.0146994,((SA211_MHAAABBN_01638:0,TT9_LFPAFLNI_01861:0):0.0078169,(AS2_ACLBLIBL_00914:0.0230834,KBS0714_MOLHKGIG_01942:0.0104399):0.00299212):0.0146994);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000600_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000600_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d638074024844cbdcc1d271eb98007d69e9f6e31
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000600_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00856:0.0922899,(AS2_ACLBLIBL_00922:0.0428066,((KBS0714_MOLHKGIG_01937:0,TT9_LFPAFLNI_01856:0):0.0120514,SA211_MHAAABBN_01633:0.01219):0.0840841):0.0922899);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000602_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000602_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0b046baf82a0ef01813f2daa14eda8dde7315907
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000602_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00858:0.0749175,(AS2_ACLBLIBL_00924:0.148813,(SA211_MHAAABBN_01631:5e-09,(TT9_LFPAFLNI_01854:0.00344222,KBS0714_MOLHKGIG_01935:0.00344484)0.358:0.00171756)1:0.119356)1:0.0749175);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000606_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000606_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a5ba181794a96c33761a2f341bf42559d28188ec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000606_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00862:0.0930104,(AS2_ACLBLIBL_00928:0.159745,((KBS0714_MOLHKGIG_01930:0,SA211_MHAAABBN_01626:0):5e-09,TT9_LFPAFLNI_01849:0.00522896):0.197396):0.0930104);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000607_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000607_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..94d1b68e78c607ec6405562f299d233094296fee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000607_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01592:0.566951,(AS2_ACLBLIBL_00930:0.0690165,(SA211_MHAAABBN_01625:0.00232785,(KBS0714_MOLHKGIG_01929:0.00757254,TT9_LFPAFLNI_01848:0.00301803)0.869:0.0052126)0.874:0.0749497)1:0.566951);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000610_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000610_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..198ddf9b1b7a9299b5cfa8d7f545c307e12ac0fa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000610_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00866:0.00992087,(AS2_ACLBLIBL_00935:0.20981,(SA211_MHAAABBN_01622:0.0113585,(KBS0714_MOLHKGIG_01926:5e-09,TT9_LFPAFLNI_01845:0.00564355)0.754:5e-09)0.662:0.00350033)1:0.00992087);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000615_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000615_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fa1b09d8280fb3bb9513060f802c666dee766430
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000615_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00876:0.148222,(AS2_ACLBLIBL_00941:0.0276772,(TT9_LFPAFLNI_01839:5e-09,(KBS0714_MOLHKGIG_01919:0.00714953,SA211_MHAAABBN_01615:0.00712109)0.729:0.00357087)0.876:0.0225622)1:0.148222);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000617_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000617_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ae3f73b4065c823fd541ca311edb98343ffb0494
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000617_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00884:0.0526024,(AS2_ACLBLIBL_00943:0.168953,(KBS0714_MOLHKGIG_01911:0.0244557,(SA211_MHAAABBN_01607:0.00402675,TT9_LFPAFLNI_01831:0.00385464)0.731:0.00740376)1:0.134835)1:0.0526024);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000620_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000620_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d71d9eb2b617627b00b535f2cb9c61722e003e99
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000620_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00950:0,KBS0714_MOLHKGIG_01908:0,SA211_MHAAABBN_01604:0,TT9_LFPAFLNI_01828:0):0.0349436,KD337_NAFOICDF_00890:0.0349436);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000622_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000622_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2fde9c5413e36ee434daa8d76d81f923ddaea0b2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000622_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00892:0.226956,(AS2_ACLBLIBL_00952:0.125038,(SA211_MHAAABBN_01602:0.00424132,(TT9_LFPAFLNI_01826:0.0269754,KBS0714_MOLHKGIG_01906:0.00888235)0.773:0.00905303)1:0.252233)1:0.226956);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000624_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000624_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..620bf33f36d674618bd2b2291ecb8a798ee8837c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000624_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00894:0.209223,(AS2_ACLBLIBL_00954:0.197316,(SA211_MHAAABBN_01600:5e-09,(KBS0714_MOLHKGIG_01904:0.0146962,TT9_LFPAFLNI_01824:0.00877494)0.891:0.0108803)0.986:0.158656)1:0.209223);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000627_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000627_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4b7768db0a40df389bbf314cf743d7eecf266c62
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000627_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00897:0.263306,(AS2_ACLBLIBL_00957:0.131825,((KBS0714_MOLHKGIG_01901:0,TT9_LFPAFLNI_01821:0):0.0282498,SA211_MHAAABBN_01597:0.0101281):0.0707996):0.263306);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000628_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000628_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6f3b1c4c31e0a22ec9ab073c18f61b3f06759527
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000628_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00898:0.0888905,(AS2_ACLBLIBL_00958:0.025587,(KBS0714_MOLHKGIG_01900:0.0069483,(SA211_MHAAABBN_01596:0.00233058,TT9_LFPAFLNI_01820:0.00225971)0.948:0.00992883)1:0.0851098)1:0.0888905);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000629_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000629_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f78d6e799247769fccc2e12784bcfbfd65220311
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000629_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00899:0.223679,(AS2_ACLBLIBL_00959:0.0966268,(SA211_MHAAABBN_01595:5e-09,(KBS0714_MOLHKGIG_01899:0.0250966,TT9_LFPAFLNI_01819:0.00616292)0.786:0.00622501)0.817:0.0617822)1:0.223679);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000632_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000632_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..de380f4995d590d2b1e77a8d8a52508682be1a37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000632_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00906:0.137887,(AS2_ACLBLIBL_00968:0.0691011,(SA211_MHAAABBN_01586:0.0097337,(KBS0714_MOLHKGIG_01890:0.00299367,TT9_LFPAFLNI_01810:0.00377927)0.835:0.0241759)0.959:0.0495395)1:0.137887);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000634_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000634_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f80bc464a82f402a4ef20e7187362a9a1abc7b7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000634_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00908:0.206035,(AS2_ACLBLIBL_00970:0.0387569,(SA211_MHAAABBN_01584:5e-09,(KBS0714_MOLHKGIG_01888:0.110767,TT9_LFPAFLNI_01808:5e-09)0.948:0.0162992)0.968:0.0942305)1:0.206035);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000635_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000635_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c448cc0cea150628365f1e7c0d718defa791a89f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000635_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00909:0.0804694,(AS2_ACLBLIBL_00971:0.0483538,((KBS0714_MOLHKGIG_01887:0,TT9_LFPAFLNI_01807:0):0.00547495,SA211_MHAAABBN_01583:0.00365004):0.050692):0.0804694);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000640_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000640_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..42d614aae4755025a0ff2f19580e7e9390b34586
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000640_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00914:0.143561,((KBS0714_MOLHKGIG_01882:0,TT9_LFPAFLNI_01802:0):0.0664492,(AS2_ACLBLIBL_00976:0.057632,SA211_MHAAABBN_01578:0.00568782):0.0524367):0.143561);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000641_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000641_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f904cf1ba2d1e584e82629935158520c1f82817
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000641_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00915:0.147562,(AS2_ACLBLIBL_00977:0.0583976,(SA211_MHAAABBN_01577:0.0026697,(TT9_LFPAFLNI_01801:0.0191495,KBS0714_MOLHKGIG_01881:5e-09)0.72:0.00816706)1:0.0714193)1:0.147562);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000645_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000645_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a7eaaf87df6d64ea3adbb51d83413762f0214706
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000645_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00923:0.12392,((KBS0714_MOLHKGIG_01874:0.0124162,SA211_MHAAABBN_01570:0.00904709)0.966:0.0316808,(AS2_ACLBLIBL_00986:0.031653,TT9_LFPAFLNI_01794:0.0136643)0.713:0.00593309)1:0.12392);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000646_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000646_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..264fdced04cddcb22bd6a5d7d628af8a38db85f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000646_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00924:0.21835,((KBS0714_MOLHKGIG_01873:0,SA211_MHAAABBN_01569:0):0.0713297,(AS2_ACLBLIBL_00987:0.00559964,TT9_LFPAFLNI_01793:0.0104016):0.0413788):0.21835);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000651_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000651_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d38ec2e1908a25e190b9e05f41511235110ead04
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000651_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00930:0.080196,(AS2_ACLBLIBL_00992:0.0540847,(SA211_MHAAABBN_01564:5e-09,(KBS0714_MOLHKGIG_01868:5e-09,TT9_LFPAFLNI_01788:0.00997716)0.84:0.0150769)0.993:0.0878478)1:0.080196);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000657_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000657_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c458e6d876e7c2aa667ee116ded5fb79b8fa51df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000657_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00945:0.0811771,(SA211_MHAAABBN_01558:0.00496772,((KBS0714_MOLHKGIG_01862:0,TT9_LFPAFLNI_01782:0):0.0154266,AS2_ACLBLIBL_00998:0.00869161):0.00498658):0.0811771);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000658_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000658_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2e635d1278bf871383571c086ed41998fe55677c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000658_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00999:0.201528,AS2_ACLBLIBL_01510:1.43348)0.984:0.0957332,(TT9_LFPAFLNI_01781:0.00249237,(SA211_MHAAABBN_01557:0.015761,KBS0714_MOLHKGIG_01861:0.00746158)0.854:0.00678457)0.984:0.0957332);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000660_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000660_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..748668f7a8481c0197a9150c8d3998b3a066c705
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000660_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01177:0.259676,(AS2_ACLBLIBL_01002:0.367142,(AS2_ACLBLIBL_02589:5e-09,(KBS0714_MOLHKGIG_00373:0,TT9_LFPAFLNI_00380:0):0.0286009):0.511713):0.259676);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000661_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000661_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3cbca9c29dca4080a7da8076bb83256dcca0534c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000661_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00946:0.10113,(AS2_ACLBLIBL_01003:0.0317419,((KBS0714_MOLHKGIG_01860:0,SA211_MHAAABBN_01556:0):0.0280713,TT9_LFPAFLNI_01780:0.023954):0.0232088):0.10113);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000662_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000662_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0b46a2e1a4235773b22a48d88fa2a980b389bfed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000662_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00947:0.103875,(AS2_ACLBLIBL_01004:0.0559301,(KBS0714_MOLHKGIG_01859:0.0063397,(SA211_MHAAABBN_01555:5e-09,TT9_LFPAFLNI_01779:0.00317026)0.851:5e-09)0.996:0.0697383)1:0.103875);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000665_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000665_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1b8d425cd444208106298db851bb06ff4633cb1e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000665_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00952:0.038693,(AS2_ACLBLIBL_01008:0.0540753,(SA211_MHAAABBN_01552:0.00643967,(KBS0714_MOLHKGIG_01856:0.00367731,TT9_LFPAFLNI_01776:0.00184209)0.633:0.000930012)1:0.0781361)1:0.038693);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000668_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000668_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..91572e372c3d8d5688dd7864629cf9169f966567
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000668_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00957:0.0805046,(AS2_ACLBLIBL_01015:0.193816,(TT9_LFPAFLNI_01773:0.00323124,(KBS0714_MOLHKGIG_01853:0.005389,SA211_MHAAABBN_01549:0.00830784)0.081:0.00507813)1:0.135992)1:0.0805046);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000672_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000672_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a31388120952f6975bade243d670e59c98cc130f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000672_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00962:0.219269,(AS2_ACLBLIBL_01020:0.14751,(TT9_LFPAFLNI_01768:0.0353782,(KBS0714_MOLHKGIG_01848:5e-09,SA211_MHAAABBN_01544:0.0122601)0.786:0.0271395)0.747:0.0663398)1:0.219269);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000673_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000673_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ee09b0fc77db67d9a5a0785385d981a23d17f757
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000673_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00963:0.0779124,(AS2_ACLBLIBL_01021:0.0456491,(KBS0714_MOLHKGIG_01847:0,SA211_MHAAABBN_01543:0,TT9_LFPAFLNI_01767:0):0.0324882):0.0779124);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000674_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000674_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f103b40d65d5d0a705042bd54a09d264f6a69bb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000674_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00966:0.0583345,(AS2_ACLBLIBL_01025:0.119594,((KBS0714_MOLHKGIG_01843:0,SA211_MHAAABBN_01540:0):0.00321821,TT9_LFPAFLNI_01764:5e-09):0.188832):0.0583345);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000675_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000675_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b24532bf43ce733e5e8e1674e253d40ca91342e1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000675_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00967:0.167404,(AS2_ACLBLIBL_01026:0.108721,((KBS0714_MOLHKGIG_01842:0,SA211_MHAAABBN_01539:0):0.0127366,TT9_LFPAFLNI_01763:0.0259337):0.0720573):0.167404);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000677_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000677_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..49779d28b915af0ec9231909c18f784904d1b8b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000677_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00969:0.0377443,(AS2_ACLBLIBL_01028:0.122259,(KBS0714_MOLHKGIG_01840:0,SA211_MHAAABBN_01537:0,TT9_LFPAFLNI_01761:0):0.010963):0.0377443);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000679_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000679_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8d00307f09d2641826241f0604b32f5d800d86e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000679_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00971:0.213476,(AS2_ACLBLIBL_01030:0.101759,(KBS0714_MOLHKGIG_01838:0.0187547,(SA211_MHAAABBN_01535:0,TT9_LFPAFLNI_01759:0):0.0292112):0.14597):0.213476);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000682_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000682_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fb92d7fe3fe5613b4772e547cf361f4ed3390803
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000682_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00975:0.315572,(AS2_ACLBLIBL_01034:0.0786708,(TT9_LFPAFLNI_01755:0.0174509,(KBS0714_MOLHKGIG_01834:0.0330323,SA211_MHAAABBN_01531:6e-09)0.776:0.0150388)0.708:0.0996048)1:0.315572);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000683_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000683_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..14ec614651d70796d487a020ff8ae822fc2b883d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000683_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01055:0.476591,(TT9_LFPAFLNI_01754:0.036824,((AS2_ACLBLIBL_01035:0.122953,SA211_MHAAABBN_01530:5e-09)0.423:0.00588151,KBS0714_MOLHKGIG_01833:0.0301716)0.616:0.00762276)1:0.476591);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000687_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000687_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0bd834447528298a70c09fbdbf80dfde7d33141b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000687_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00980:0.184274,(AS2_ACLBLIBL_01041:0.0970976,(KBS0714_MOLHKGIG_01828:0.00832384,(TT9_LFPAFLNI_01749:0.0274645,SA211_MHAAABBN_01525:0.0106122)0.824:0.00894516)0.995:0.112484)1:0.184274);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000688_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000688_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..274c13758c4b39f3acb9a14de56040db5c99b47b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000688_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00981:0.315366,(AS2_ACLBLIBL_01042:0.169154,(SA211_MHAAABBN_01524:0.0140283,(KBS0714_MOLHKGIG_01827:0.00921749,TT9_LFPAFLNI_01748:0.0122119)0.893:0.0174279)0.939:0.0810875)1:0.315366);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000689_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000689_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..749dd6601c8d54490b049fbc17909b64f83ee2e6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000689_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00982:0.252052,(AS2_ACLBLIBL_01043:0.0954285,((KBS0714_MOLHKGIG_01826:0,TT9_LFPAFLNI_01747:0):0.0104507,SA211_MHAAABBN_01523:0.0274871):0.162691):0.252052);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000691_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000691_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..79d058dcf5feafcf94294798097b85dcd41beeac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000691_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00984:0.28559,(AS2_ACLBLIBL_01045:0.247233,(SA211_MHAAABBN_01521:0.0193479,(KBS0714_MOLHKGIG_01824:0.00636459,TT9_LFPAFLNI_01745:0.0132211)0.881:0.0201688)0.809:0.0619865)1:0.28559);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000692_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000692_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9ed2dc899d318a8fadf1f517b26c4633159250f5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000692_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00985:0.0724627,(AS2_ACLBLIBL_01046:0.103729,(SA211_MHAAABBN_01520:0.0108004,(KBS0714_MOLHKGIG_01823:0.00785112,TT9_LFPAFLNI_01744:0.0045259)0.767:0.0025311)1:0.0579309)1:0.0724627);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000693_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000693_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..12adddce5f06998bcf802d330352672f2ee4c95c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000693_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00986:0.256678,(AS2_ACLBLIBL_01047:0.0738842,((KBS0714_MOLHKGIG_01822:0,TT9_LFPAFLNI_01743:0):5e-09,SA211_MHAAABBN_01519:0.019803):0.0559659):0.256678);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000694_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000694_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8d832e1a34c3f1aba820791dd3d657ec0318a918
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000694_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00987:0.0983813,(AS2_ACLBLIBL_01048:0.069639,((KBS0714_MOLHKGIG_01821:0,TT9_LFPAFLNI_01742:0):0.0125942,SA211_MHAAABBN_01518:0.0269566):0.0644929):0.0983813);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000695_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000695_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3de2d4bdef4b19701f648d571e445144caa8652a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000695_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00988:0.0428587,(AS2_ACLBLIBL_01049:0.10059,(TT9_LFPAFLNI_01741:0.00376361,(SA211_MHAAABBN_01517:0.0184587,KBS0714_MOLHKGIG_01820:0.00713136)0.582:0.00180664)1:0.0869942)1:0.0428587);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000696_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000696_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..152334fb91f0d9eac50433221180294fbefe978d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000696_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00989:0.0427039,(AS2_ACLBLIBL_01051:0.0366541,(KBS0714_MOLHKGIG_01819:0.0031521,(SA211_MHAAABBN_01516:5e-09,TT9_LFPAFLNI_01740:0.00208353)0.757:0.0010177)0.997:0.0297437)1:0.0427039);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000700_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000700_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ebdfad50bb768ec893f21f5a37d1653b4cee0d16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000700_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00994:0.0420294,(AS2_ACLBLIBL_01059:0.0102478,(TT9_LFPAFLNI_01736:5e-09,(KBS0714_MOLHKGIG_01815:5e-09,SA211_MHAAABBN_01512:0.0087657)0.859:0.00428899)0.947:0.021477)1:0.0420294);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000702_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000702_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d55d960896705f6ceea9ed5ebbc74841be1e6d05
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000702_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00996:0.107832,(AS2_ACLBLIBL_01061:0.0914967,(SA211_MHAAABBN_01510:5e-09,(KBS0714_MOLHKGIG_01813:0.00714564,TT9_LFPAFLNI_01734:0.0119129)0.876:0.00471086)0.991:0.057808)1:0.107832);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000703_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000703_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3b1eaca4db1cd16fe23000d58eaaedaba888eae3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000703_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01062:0,KBS0714_MOLHKGIG_01812:0,SA211_MHAAABBN_01509:0,TT9_LFPAFLNI_01733:0):0.0154508,KD337_NAFOICDF_00997:0.0154508);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000707_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000707_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f96b1ee0d168dd143028daf0a806527b60fbbf6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000707_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01005:0.196099,((KBS0714_MOLHKGIG_01804:5e-09,TT9_LFPAFLNI_01725:0.0237392)0.985:0.161956,(AS2_ACLBLIBL_01069:0.00775011,SA211_MHAAABBN_01501:5e-09)0.923:0.098726)1:0.196099);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000710_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000710_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..54f79ba7da151671b0fc209e5c26817d0ca08347
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000710_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01008:0.00189495,((AS2_ACLBLIBL_01072:0.0161029,SA211_MHAAABBN_01498:0.0143312)0.999:0.0393293,(KBS0714_MOLHKGIG_01801:0.0203861,TT9_LFPAFLNI_01722:0.0154194)0.732:0.00363371)1:0.00189495);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000711_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000711_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8221f8be909132b4184115fe5a7e7d4883068090
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000711_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01009:0.00178975,((AS2_ACLBLIBL_01073:0.00429891,SA211_MHAAABBN_01497:0.0111028)0.899:0.00750368,(KBS0714_MOLHKGIG_01800:0.0133151,TT9_LFPAFLNI_01721:0.00597269)0.251:0.00235603)1:0.00178975);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000713_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000713_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90ba41123adeb910caee558665c6861168769d1b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000713_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01013:0.115939,(AS2_ACLBLIBL_01078:0.0521519,(SA211_MHAAABBN_01495:0.00447902,(TT9_LFPAFLNI_01717:0.0133306,KBS0714_MOLHKGIG_01798:0.00266762)0.769:0.00218414)0.996:0.0377683)1:0.115939);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000715_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000715_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..47f7c8edea3bfefea68945383a68e22cf0603ee1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000715_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01016:0.077261,(AS2_ACLBLIBL_01093:0.0646881,((KBS0714_MOLHKGIG_01785:0,SA211_MHAAABBN_01492:0):5e-09,TT9_LFPAFLNI_01714:0.00601727):0.0363605):0.077261);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000716_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000716_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..434ef88c9230f14f11c51bf5efb7d4472e4b23c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000716_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01017:0.0490157,(AS2_ACLBLIBL_01094:0.0398888,(KBS0714_MOLHKGIG_01784:5e-09,(SA211_MHAAABBN_01491:0.0049679,TT9_LFPAFLNI_01713:0.00247638)0.789:0.00247495)0.961:0.0263908)1:0.0490157);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000718_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000718_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5afbea6df6f6b1fcb829b0f5538366c62f43c677
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000718_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01019:0.0450369,(AS2_ACLBLIBL_01096:0.0707769,(TT9_LFPAFLNI_01711:0.0106936,(KBS0714_MOLHKGIG_01782:0.0043065,SA211_MHAAABBN_01489:0.003517)0.507:0.00354221)0.999:0.057836)1:0.0450369);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000721_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000721_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..609dfa09d055f97267a80db0dc04421586a18132
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000721_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01025:0.0887011,(AS2_ACLBLIBL_01101:0.0418414,(KBS0714_MOLHKGIG_01776:0.0065087,(SA211_MHAAABBN_01483:0.00216206,TT9_LFPAFLNI_01705:0.00431476)0.77:6e-09)0.998:0.0729685)1:0.0887011);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000722_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000722_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9a40ab31680d8b607f8d6474b89907af6489097a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000722_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01026:0.0989543,(AS2_ACLBLIBL_01102:0.0819327,(TT9_LFPAFLNI_01704:0.00497214,(KBS0714_MOLHKGIG_01775:5e-09,SA211_MHAAABBN_01482:0.005576)0.732:0.00624373)0.968:0.0356516)1:0.0989543);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000723_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000723_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fbe1018555c3ec749f76675ba7570708540c010f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000723_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01028:0.0361667,(AS2_ACLBLIBL_01103:0.0731396,(TT9_LFPAFLNI_01703:0.0128056,(KBS0714_MOLHKGIG_01774:0.0125005,SA211_MHAAABBN_01481:0.00622564)0.758:0.0063048)0.947:0.0495429)1:0.0361667);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000725_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000725_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..aa593301fc46b121e948167bfd880319f5c7e0b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000725_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01031:0.0702494,(AS2_ACLBLIBL_01105:0.089597,((KBS0714_MOLHKGIG_01772:0,SA211_MHAAABBN_01479:0):5e-09,TT9_LFPAFLNI_01701:0.0210292):0.0880842):0.0702494);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000728_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000728_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6ce907a68f1b0959d6e12bb82c70ff2184395918
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000728_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01035:0.0460569,(AS2_ACLBLIBL_01109:5e-09,(SA211_MHAAABBN_01475:0.00587951,(KBS0714_MOLHKGIG_01768:0.00587723,TT9_LFPAFLNI_01697:5e-09)0.462:5e-09)0.907:0.0119846)1:0.0460569);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000729_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000729_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8be975df63d3423feb7e4a6687a1996f8ad3719e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000729_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01037:0.378488,(AS2_ACLBLIBL_01112:0.183524,(TT9_LFPAFLNI_01694:0.00785483,(KBS0714_MOLHKGIG_01765:0.00649857,SA211_MHAAABBN_01472:0.0196505)0.736:0.00514384)0.805:0.0881712)1:0.378488);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000730_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000730_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..65312a5887e17c5c56454e667b3e7112eada5673
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000730_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01038:0.150097,(AS2_ACLBLIBL_01113:0.0679992,(KBS0714_MOLHKGIG_01764:0.0249935,(SA211_MHAAABBN_01471:0.0159561,TT9_LFPAFLNI_01693:0.0103841)0.43:0.00572682)0.968:0.0571166)1:0.150097);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000731_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000731_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8b5aa4f766e07e45270961cca97015ba3db62418
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000731_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01039:0.107667,(AS2_ACLBLIBL_01114:0.0438545,(KBS0714_MOLHKGIG_01763:0.00190692,(TT9_LFPAFLNI_01692:0.00757008,SA211_MHAAABBN_01470:0.0018873)0.762:0.00186378)1:0.0658509)1:0.107667);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000735_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000735_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..38f2fc1d837e8662bc9d7fc2f1ef37f0fb2751c5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000735_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01043:0.104502,(AS2_ACLBLIBL_01118:0.041461,((KBS0714_MOLHKGIG_01759:0,SA211_MHAAABBN_01466:0):0.00299256,TT9_LFPAFLNI_01688:0.00265238):0.0442249):0.104502);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000738_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000738_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e76a2f1b7196c925416ea18ef205f93910894ccc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000738_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01048:0.138738,(AS2_ACLBLIBL_01123:0.0422238,((KBS0714_MOLHKGIG_01754:0,SA211_MHAAABBN_01461:0):5e-09,TT9_LFPAFLNI_01683:0.0117601):0.0590642):0.138738);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000739_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000739_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fca2da7f3f3c28446bf78e4c5ea387415399b146
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000739_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01049:0.0888417,(AS2_ACLBLIBL_01124:0.0770587,((KBS0714_MOLHKGIG_01753:0,SA211_MHAAABBN_01460:0):0.00781085,TT9_LFPAFLNI_01682:0.010066):0.0648468):0.0888417);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000740_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000740_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1a543647bde28147257ecb8248942fea8f917338
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000740_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01050:0.0453259,(AS2_ACLBLIBL_01125:0.0708523,((KBS0714_MOLHKGIG_01752:0,SA211_MHAAABBN_01459:0):0.00983012,TT9_LFPAFLNI_01681:0.00287665):0.0597458):0.0453259);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000741_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000741_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0905bef5786611c98b7a17bbc9666dccb979686d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000741_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01051:0.166208,(AS2_ACLBLIBL_01126:0.0584212,((KBS0714_MOLHKGIG_01751:0,SA211_MHAAABBN_01458:0):0.00495213,TT9_LFPAFLNI_01680:0.0353634):0.0997258):0.166208);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000743_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000743_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4c40f98707663996836c0be6d4b6708a518af32b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000743_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01053:0.0506442,(AS2_ACLBLIBL_01128:0.0303542,(KBS0714_MOLHKGIG_01749:0,SA211_MHAAABBN_01456:0,TT9_LFPAFLNI_01678:0):0.00399432):0.0506442);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000744_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000744_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..28245e5359b69afdb9696fa51fe83fe523f0dadf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000744_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01057:0.101887,(AS2_ACLBLIBL_01129:0.0636256,(KBS0714_MOLHKGIG_01748:0,SA211_MHAAABBN_01455:0,TT9_LFPAFLNI_01677:0):0.0808235):0.101887);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000745_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000745_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..baa06d37dd0843e3418c5b8620af9c6c0842d210
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000745_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01058:0.182986,(AS2_ACLBLIBL_01130:0.100012,((KBS0714_MOLHKGIG_01747:0,SA211_MHAAABBN_01454:0):0.0121012,TT9_LFPAFLNI_01676:5e-09):0.0876428):0.182986);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000748_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000748_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..10613026ae45ed5860fde636359e231d17ee945d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000748_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01062:0.0736305,(AS2_ACLBLIBL_01133:5e-09,(KBS0714_MOLHKGIG_01744:0,SA211_MHAAABBN_01451:0,TT9_LFPAFLNI_01673:0):0.0549009):0.0736305);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000751_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000751_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6059f39c5222a3eb28e9f23e02e4b84edc288b0c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000751_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01065:0.492987,(AS2_ACLBLIBL_01136:0.170578,(KBS0714_MOLHKGIG_01741:5e-09,(SA211_MHAAABBN_01448:0.0039107,TT9_LFPAFLNI_01670:5e-09)0.468:0.00390794)0.935:0.13326)1:0.492987);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000752_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000752_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..325c13d8281cddb2dbe626b7cc64c1d09c8cbb64
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000752_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01066:0.0351229,(AS2_ACLBLIBL_01137:0.0417332,(SA211_MHAAABBN_01447:6e-09,(KBS0714_MOLHKGIG_01740:0.00284559,TT9_LFPAFLNI_01669:0.00286359)0.455:0.00286083)0.995:0.0367854)1:0.0351229);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000754_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000754_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b3fe9f5bce17780aaf8ef4442ce1a0717b29d786
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000754_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01069:0.110291,(AS2_ACLBLIBL_01140:0.10962,(SA211_MHAAABBN_01445:0.0133082,(KBS0714_MOLHKGIG_01738:0.00960326,TT9_LFPAFLNI_01667:0.0119071)0.889:0.0157528)0.999:0.102445)1:0.110291);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000755_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000755_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9daab8a24c7fb21885dbf742ce0915dcb58b6f73
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000755_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01070:0.0724046,(AS2_ACLBLIBL_01141:0.0230908,(KBS0714_MOLHKGIG_01737:0.0043173,(TT9_LFPAFLNI_01666:0.0125404,SA211_MHAAABBN_01444:0.00834774)0.772:0.00398454)0.968:0.0405116)1:0.0724046);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000757_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000757_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1586880129488dff5cd7f4d7894cb791623492fe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000757_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01073:0.153325,(AS2_ACLBLIBL_01144:0.0290719,((KBS0714_MOLHKGIG_01734:0,TT9_LFPAFLNI_01663:0):0.0124085,SA211_MHAAABBN_01441:5e-09):0.0361365):0.153325);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000760_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000760_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..31149539cf0bac50ad9789faa8a5ea9bbf0d588a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000760_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01076:0.0452094,(AS2_ACLBLIBL_01147:0.00615263,(TT9_LFPAFLNI_01660:0.00406457,(KBS0714_MOLHKGIG_01731:5e-09,SA211_MHAAABBN_01438:0.00406722)0.758:5e-09)0.765:0.0142941)1:0.0452094);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000761_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000761_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..02840597e1870446ede3677e8717e8350667e324
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000761_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01077:0.0352705,(AS2_ACLBLIBL_01148:0.0110735,(KBS0714_MOLHKGIG_01730:0.00562383,(SA211_MHAAABBN_01437:0,TT9_LFPAFLNI_01659:0):5e-09):0.0173436):0.0352705);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000763_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000763_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d21a90ace4638aff3438826a2a8f326c5f6f9d1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000763_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01079:0.016172,(AS2_ACLBLIBL_01150:0.0151432,(KBS0714_MOLHKGIG_01728:0,SA211_MHAAABBN_01435:0,TT9_LFPAFLNI_01657:0):0.0101141):0.016172);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000764_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000764_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a4af370624f9603bc65e25d459d6f9f8647f702f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000764_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01080:0.0231785,(AS2_ACLBLIBL_01151:0.0185099,((KBS0714_MOLHKGIG_01727:0,TT9_LFPAFLNI_01656:0):0.0007615,SA211_MHAAABBN_01434:0.00076739):0.0100749):0.0231785);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000765_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000765_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4043a74350a082903a07cd9e75ee69f391379c51
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000765_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01082:0.00805553,(AS2_ACLBLIBL_01152:5e-09,(KBS0714_MOLHKGIG_01726:5e-09,(SA211_MHAAABBN_01433:0,TT9_LFPAFLNI_01655:0):0.00800405):0.00802023):0.00805553);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000767_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000767_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eee79c7a5ec33c5cce66254d34af16b5040071b4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000767_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01084:0.0196701,(AS2_ACLBLIBL_01154:0.0186335,((KBS0714_MOLHKGIG_01724:0,TT9_LFPAFLNI_01653:0):5e-09,SA211_MHAAABBN_01431:0.0013946):0.0151939):0.0196701);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000768_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000768_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2e990d40652a368975b0b0466e6e184eb654cb2f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000768_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01085:0.00855744,(AS2_ACLBLIBL_01155:0.00697376,((KBS0714_MOLHKGIG_01723:0,TT9_LFPAFLNI_01652:0):5e-09,SA211_MHAAABBN_01430:0.00247049):0.0109407):0.00855744);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000769_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000769_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..28f5186dcb42cecf6b91c737b0de2c55ebfc8492
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000769_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01086:0.203633,(AS2_ACLBLIBL_01156:0.0957788,((KBS0714_MOLHKGIG_01722:0,TT9_LFPAFLNI_01651:0):0.0675064,SA211_MHAAABBN_01429:5e-09):0.0883895):0.203633);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000770_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000770_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e8eba212c1bbd52c42acff2e0bf2fc423adda0ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000770_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01087:0.165641,(AS2_ACLBLIBL_01157:0.0991567,((KBS0714_MOLHKGIG_01721:0,TT9_LFPAFLNI_01650:0):5e-09,SA211_MHAAABBN_01428:0.0134996):0.226143):0.165641);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000772_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000772_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..365cbc36449639104f6f46402f6f1025094ba797
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000772_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01089:0.0137632,(AS2_ACLBLIBL_01159:0.0183311,((KBS0714_MOLHKGIG_01719:0,TT9_LFPAFLNI_01648:0):5e-09,SA211_MHAAABBN_01426:0.00458129):0.00453969):0.0137632);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000774_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000774_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d58771362f20321353d5995029f85779c119ea5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000774_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01161:0,KBS0714_MOLHKGIG_01717:0,SA211_MHAAABBN_01424:0,TT9_LFPAFLNI_01646:0):0.0298265,KD337_NAFOICDF_01091:0.0298265);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000776_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000776_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b18d07064875a2410dfa34d6b80e8d07cd841e63
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000776_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01163:0,KBS0714_MOLHKGIG_01715:0,SA211_MHAAABBN_01422:0,TT9_LFPAFLNI_01644:0):0.00537453,KD337_NAFOICDF_01093:0.00537453);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000780_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000780_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1e35743c0ebf3989848930116150896c6c5d97b6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000780_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01097:0.0290774,(AS2_ACLBLIBL_01167:0.0219604,(KBS0714_MOLHKGIG_01711:0,SA211_MHAAABBN_01418:0,TT9_LFPAFLNI_01640:0):0.0107801):0.0290774);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000781_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000781_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..99d108808940440914b0e86259b38e429b836cbf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000781_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01098:0.0675944,(AS2_ACLBLIBL_01168:0.00533747,(KBS0714_MOLHKGIG_01710:0,SA211_MHAAABBN_01417:0,TT9_LFPAFLNI_01639:0):0.0359822):0.0675944);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000788_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000788_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5b7d28b9a92970e7bccb2d456fed2b50277af448
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000788_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01105:0.0321786,(AS2_ACLBLIBL_01175:0.00519005,(KBS0714_MOLHKGIG_01703:0,SA211_MHAAABBN_01410:0,TT9_LFPAFLNI_01632:0):0.0184536):0.0321786);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000789_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000789_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4353b2be42aeca40ac910e9dc0b7be8d328cbf63
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000789_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01106:0.037384,(AS2_ACLBLIBL_01176:0.0119908,(KBS0714_MOLHKGIG_01702:0,SA211_MHAAABBN_01409:0,TT9_LFPAFLNI_01631:0):0.0179993):0.037384);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000790_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000790_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b402f7fb22045b16950ff7568cf39237be35bff7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000790_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01107:0.0456383,(AS2_ACLBLIBL_01177:0.0064912,(KBS0714_MOLHKGIG_01701:0,SA211_MHAAABBN_01408:0,TT9_LFPAFLNI_01630:0):0.0134146):0.0456383);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000791_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000791_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ab8b7bd0f1cbb4c698c2bfa23af87e8f6a762177
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000791_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01108:0.0526976,(AS2_ACLBLIBL_01178:0.0301225,((KBS0714_MOLHKGIG_01700:0,SA211_MHAAABBN_01407:0):0.00677242,TT9_LFPAFLNI_01629:0.00245735):0.0446285):0.0526976);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000795_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000795_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..582529ed7299c0ff6e80896be81b7472fb94b147
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000795_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01182:0,KBS0714_MOLHKGIG_01696:0,SA211_MHAAABBN_01403:0,TT9_LFPAFLNI_01625:0):0.014731,KD337_NAFOICDF_01112:0.014731);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000796_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000796_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..30c97f81a7ca35057f1fb14759e41307e84b1334
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000796_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01183:0,KBS0714_MOLHKGIG_01695:0,SA211_MHAAABBN_01402:0,TT9_LFPAFLNI_01624:0):0.0164082,KD337_NAFOICDF_01113:0.0164082);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000797_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000797_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f1cb03a5fd78a49afe303022207c26db65b4c67f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000797_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01114:0.00710484,(AS2_ACLBLIBL_01184:5e-09,(KBS0714_MOLHKGIG_01694:0,SA211_MHAAABBN_01401:0,TT9_LFPAFLNI_01623:0):0.0140217):0.00710484);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000801_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000801_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8a216b6aa32f326bd8291f40c9bd25ca30c8fd6c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000801_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01118:0.0277975,(AS2_ACLBLIBL_01188:5e-09,((KBS0714_MOLHKGIG_01690:0,SA211_MHAAABBN_01397:0):5e-09,TT9_LFPAFLNI_01619:0.00672151):0.0202678):0.0277975);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000802_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000802_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9b2da2644ad71e44295b036f75867ff34878f1e4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000802_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01119:0.0240659,(AS2_ACLBLIBL_01189:0.0206926,((KBS0714_MOLHKGIG_01689:0,TT9_LFPAFLNI_01618:0):0.00598019,SA211_MHAAABBN_01396:0.00601885):0.0168947):0.0240659);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000803_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000803_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cee0167868d364cd7124c9d8c4d427f31981e425
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000803_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01120:0.068743,(AS2_ACLBLIBL_01190:0.522364,(KBS0714_MOLHKGIG_01688:0.0110313,(SA211_MHAAABBN_01392:6e-09,TT9_LFPAFLNI_01617:0.0353145)0.801:0.0387849)0.545:0.0138803)1:0.068743);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000806_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000806_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7911ff72d9006b59482d0ef48e7ff0df38826950
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000806_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01124:0.0650066,(AS2_ACLBLIBL_01194:0.130754,(SA211_MHAAABBN_01388:0.00689836,(KBS0714_MOLHKGIG_01684:5e-09,TT9_LFPAFLNI_01613:0.00689707)0.76:5e-09)0.998:0.196844)1:0.0650066);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000812_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000812_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..024c3153f2987c700a9f77db947fbdb1fc77905a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000812_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01131:0.20364,(AS2_ACLBLIBL_01203:0.100988,(KBS0714_MOLHKGIG_01675:0.012573,(SA211_MHAAABBN_01380:0.0133499,TT9_LFPAFLNI_01605:0.00933919)0.26:0.00668585)1:0.110854)1:0.20364);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000813_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000813_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..01ba2fb21865532e0f80b7dcadcf5db24365c9d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000813_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01132:0.164251,(AS2_ACLBLIBL_01204:0.105729,(TT9_LFPAFLNI_01604:6e-09,(KBS0714_MOLHKGIG_01674:0.00748748,SA211_MHAAABBN_01379:0.00736767)0.942:0.0148064)0.998:0.110484)1:0.164251);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000814_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000814_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0dd5ee48adea34a30ae99de3175c3dc96daf07a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000814_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01133:0.13277,(AS2_ACLBLIBL_01205:0.0290724,(TT9_LFPAFLNI_01603:0.0109244,(KBS0714_MOLHKGIG_01673:5e-09,SA211_MHAAABBN_01378:0.00947935)0.756:0.0135682)0.978:0.0643532)1:0.13277);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000819_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000819_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eb3de231d66b74124cab372cf4fa1f75ad9ee9da
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000819_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01137:0.0522379,(AS2_ACLBLIBL_01226:0.123083,(TT9_LFPAFLNI_01598:0.00590887,(SA211_MHAAABBN_01373:0.014287,KBS0714_MOLHKGIG_01668:0.00591196)0.41:0.00285271)0.993:0.0582038)1:0.0522379);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000820_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000820_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8964796b4141548ab671d538745f9d8ab6a56d30
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000820_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01138:0.190687,(AS2_ACLBLIBL_01227:0.0618713,(KBS0714_MOLHKGIG_01667:0.0244931,(SA211_MHAAABBN_01372:0,TT9_LFPAFLNI_01597:0):0.00583034):0.0718976):0.190687);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000821_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000821_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..034d59f4912484ef853a4246ab23ab41a15eb0ac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000821_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01139:0.0799094,(AS2_ACLBLIBL_01228:0.0171285,(KBS0714_MOLHKGIG_01666:0.00389106,(SA211_MHAAABBN_01371:0.00857961,TT9_LFPAFLNI_01596:0.00288942)0.9:0.0134787)0.934:0.0182601)1:0.0799094);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000822_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000822_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ea87e4575d0bbba6e5ae2ef65d493e17a0a01f05
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000822_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01140:0.0762947,(AS2_ACLBLIBL_01229:0.0463172,(KBS0714_MOLHKGIG_01665:0.0157716,(SA211_MHAAABBN_01370:0.00263771,TT9_LFPAFLNI_01595:0.00513342)0.738:0.00247935)0.991:0.0395669)1:0.0762947);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000823_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000823_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8107c30186b7a604c0d07f3287d03b5f8a6c895e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000823_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01141:0.0602431,(AS2_ACLBLIBL_01230:0.0706628,(KBS0714_MOLHKGIG_01664:6e-09,(TT9_LFPAFLNI_01594:0.0074246,SA211_MHAAABBN_01369:0.00991095)0.246:0.00242944)1:0.256596)1:0.0602431);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000824_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000824_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..720d0d4098257a6e2c9a4f6a225abee5721c44c3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000824_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01142:0.243953,(AS2_ACLBLIBL_01231:0.361212,(KBS0714_MOLHKGIG_01663:0.0135699,(SA211_MHAAABBN_01368:0.00442972,TT9_LFPAFLNI_01593:0.0136026)0.361:0.00680502)0.424:0.0305235)1:0.243953);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000829_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000829_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..66d81e30aac73f5cf255605506b082393c90da85
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000829_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01148:0.00499657,((AS2_ACLBLIBL_01237:0,SA211_MHAAABBN_01362:0,TT9_LFPAFLNI_01587:0):5e-09,KBS0714_MOLHKGIG_01657:0.0099627):0.00499657);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000831_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000831_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8be6dc4e9c77e8105d08ecea4d5b98bb7bfe596a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000831_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01151:0.0211156,(AS2_ACLBLIBL_01240:0.0150641,(KBS0714_MOLHKGIG_01653:0.00700053,(SA211_MHAAABBN_01358:0.00179771,TT9_LFPAFLNI_01583:5e-09)0.731:0.00385966)0.997:0.0243262)1:0.0211156);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000832_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000832_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9cff8332367fab949eebd3d7cbd9689cc6dab3a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000832_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01152:0.0469309,(AS2_ACLBLIBL_01241:0.0180416,(SA211_MHAAABBN_01357:0.00521568,(KBS0714_MOLHKGIG_01652:0.00782719,TT9_LFPAFLNI_01582:0.00260776)0.76:6e-09)0.99:0.027603)1:0.0469309);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000834_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000834_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d0ee6c4ca0bbd2c7863b32a219f3023a39eb779f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000834_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01154:0.1035,(AS2_ACLBLIBL_01243:0.0852988,(KBS0714_MOLHKGIG_01650:5e-09,(SA211_MHAAABBN_01355:0.0113472,TT9_LFPAFLNI_01580:5e-09)0.827:0.00564697)0.983:0.104124)1:0.1035);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000835_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000835_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..507e80dd2132b0a910748ed8076432d6f73d5768
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000835_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01155:0.047574,(AS2_ACLBLIBL_01244:0.0159765,(KBS0714_MOLHKGIG_01649:0.0018602,(SA211_MHAAABBN_01354:0.00370881,TT9_LFPAFLNI_01579:0.0110448)0.87:0.00370772)0.903:0.0128021)1:0.047574);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000837_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000837_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..491508fb2a8e1590b953215361743fe12c4ec2a5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000837_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01157:0.282101,(AS2_ACLBLIBL_01246:0.12765,(TT9_LFPAFLNI_01577:0.0145977,(KBS0714_MOLHKGIG_01647:0.0392952,SA211_MHAAABBN_01352:0.031196)0.369:0.0133287)0.978:0.314515)1:0.282101);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000840_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000840_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..34a1162e8ae5a444e219d4d0fec34c705cbc9efe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000840_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01160:0.109685,(AS2_ACLBLIBL_01249:0.0685273,(SA211_MHAAABBN_01349:5e-09,(KBS0714_MOLHKGIG_01644:0.00978678,TT9_LFPAFLNI_01574:0.00485839)0.792:0.00976478)0.887:0.0279017)1:0.109685);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000845_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000845_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b7afec48fb5044d50da46d63163838b2c159f4e1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000845_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01165:0.237016,(AS2_ACLBLIBL_01256:0.211231,(SA211_MHAAABBN_01344:0.0180774,(KBS0714_MOLHKGIG_01639:0.0328618,TT9_LFPAFLNI_01568:0.0121318)0.514:0.0165394)0.998:0.233109)1:0.237016);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000846_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000846_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8a8784f078e6117c0414c6f6c07a225882bc7659
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000846_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01166:0.0332532,(AS2_ACLBLIBL_01257:0.0388948,((KBS0714_MOLHKGIG_01638:0,SA211_MHAAABBN_01343:0):5e-09,TT9_LFPAFLNI_01567:5e-09):0.0288372):0.0332532);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000847_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000847_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a13b5dd6f113e5b8cac2161438572c9837f1a20d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000847_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01167:0.21102,(AS2_ACLBLIBL_01258:0.102795,(TT9_LFPAFLNI_01566:0.0249449,(KBS0714_MOLHKGIG_01637:5e-09,SA211_MHAAABBN_01342:0.00991638)0.928:0.0199889)0.953:0.060719)1:0.21102);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000848_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000848_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..981c75fd3b3d5c33a736375b9b77bf9b7691e802
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000848_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01169:0.0332143,(AS2_ACLBLIBL_01260:0.161376,((KBS0714_MOLHKGIG_01635:0,TT9_LFPAFLNI_01564:0):5e-09,SA211_MHAAABBN_01340:0.0322568):0.0510556):0.0332143);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000852_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000852_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1003a7fbac4b5c128748e5a9e481000730b62306
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000852_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01174:0.13614,(AS2_ACLBLIBL_01266:0.0415853,(SA211_MHAAABBN_01335:0.00468011,(KBS0714_MOLHKGIG_01630:0.011796,TT9_LFPAFLNI_01559:0.00704051)0.871:0.00476871)0.992:0.0545431)1:0.13614);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000858_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000858_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..74832ebf39ca4dd53bcbf02ad8f41a4f5fbf38d4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000858_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01193:0.0184841,(TT9_LFPAFLNI_01536:0.0120957,(SA211_MHAAABBN_01321:5e-09,(AS2_ACLBLIBL_01288:0.0980268,KBS0714_MOLHKGIG_01610:0.00836089)0.858:0.00779235)0.296:0.00803321)1:0.0184841);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000860_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000860_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..392dda4aa581eeb0f722591e7c00978f68cd5f82
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000860_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01200:0.00597333,(AS2_ACLBLIBL_01292:0.0138805,((KBS0714_MOLHKGIG_01602:0,TT9_LFPAFLNI_01529:0):0.00295582,SA211_MHAAABBN_01314:5e-09):0.00894291):0.00597333);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000861_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000861_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6ef5300d6578fa19245bfe19a10bf8fdbc331e25
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000861_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01202:0.0064962,(AS2_ACLBLIBL_01293:0.0187142,(KBS0714_MOLHKGIG_01600:5e-09,(SA211_MHAAABBN_01312:5e-09,TT9_LFPAFLNI_01527:0.00603883)0.796:0.0122812)0.994:0.0508878)1:0.0064962);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000863_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000863_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..025f7240b14e8c2da2e2fcb769ed7bfe45301248
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000863_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01204:2.5e-09,(AS2_ACLBLIBL_01295:6e-09,((KBS0714_MOLHKGIG_01598:0,SA211_MHAAABBN_01310:0):0.014878,TT9_LFPAFLNI_01525:0.0148145):0.0148617):2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000864_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000864_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b1324c25fa28fac4b812de67c580c0236f043162
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000864_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01207:0.0390839,(AS2_ACLBLIBL_01298:0.0542776,((KBS0714_MOLHKGIG_01597:0,SA211_MHAAABBN_01309:0):0.00494766,TT9_LFPAFLNI_01524:0.00655636):0.0633141):0.0390839);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000865_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000865_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..15a2ffaa33b2d991d5e32c3dfcc76a557250553e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000865_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01219:0.0708366,(AS2_ACLBLIBL_01300:0.122236,((KBS0714_MOLHKGIG_01591:0,SA211_MHAAABBN_01303:0):0.0061057,TT9_LFPAFLNI_01518:0.0198563):0.0843595):0.0708366);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000866_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000866_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..07df42fc55ea447c24db9f872d8c8574327c77b4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000866_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01214:0.0100195,(TT9_LFPAFLNI_01522:0.0245308,((AS2_ACLBLIBL_01301:0.390589,KBS0714_MOLHKGIG_01595:0.00905958)0.713:0.0105015,SA211_MHAAABBN_01307:0.00282278)0.219:0.00748228)1:0.0100195);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000867_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000867_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e9b9c9923bfcf3bbf6548f38a356f766cdddb5af
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000867_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01215:0.09172,(AS2_ACLBLIBL_01327:0.223184,((KBS0714_MOLHKGIG_01594:0,TT9_LFPAFLNI_01521:0):0.00727551,SA211_MHAAABBN_01306:0.0018849):0.0924736):0.09172);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000868_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000868_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd17f99a920871d1e56bdcee55f49e0cb44a2042
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000868_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01231:0.191772,(AS2_ACLBLIBL_01333:0.0204634,(SA211_MHAAABBN_01300:0.0143808,(KBS0714_MOLHKGIG_01589:0.00172258,TT9_LFPAFLNI_01516:0.00171604)0.94:0.0115931)0.973:0.0318377)1:0.191772);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000872_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000872_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b68a276a6155da07ee7658fa898117da1b035d39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000872_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01238:0.0104009,(KBS0714_MOLHKGIG_01578:0.00291252,(TT9_LFPAFLNI_01505:5e-09,(AS2_ACLBLIBL_01345:0.169894,SA211_MHAAABBN_01288:6e-09)0.772:0.00416311)0.781:0.00572839)1:0.0104009);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000875_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000875_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..472f2e21c94de3eded7e16cea0fefbe94179210c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000875_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01242:0.0676714,(AS2_ACLBLIBL_01349:0.135904,((KBS0714_MOLHKGIG_01575:0,SA211_MHAAABBN_01285:0):5e-09,TT9_LFPAFLNI_01502:0.00571433):0.141086):0.0676714);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000876_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000876_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..98abc8f308b066c23cdb8fb8d48002f067aa22fc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000876_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01243:0.13566,(AS2_ACLBLIBL_01350:0.152543,(SA211_MHAAABBN_01284:0.00558097,(KBS0714_MOLHKGIG_01574:5e-09,TT9_LFPAFLNI_01501:0.0056131)0.751:5e-09)0.94:0.0952798)1:0.13566);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000878_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000878_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cc687f4c6abe9de98d447bbfdc6c0d57ae3a3cc4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000878_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01245:0.139693,(AS2_ACLBLIBL_01352:0.0433539,(SA211_MHAAABBN_01282:0.00543846,(KBS0714_MOLHKGIG_01572:0.0175932,TT9_LFPAFLNI_01499:0.00581432)0.768:0.00622622)0.982:0.0680141)1:0.139693);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000882_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000882_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c841baa19ddaf2c7ef6330ff933eb43f2b6fa6aa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000882_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01250:0.150261,(TT9_LFPAFLNI_01494:0.00231499,((KBS0714_MOLHKGIG_01567:0,SA211_MHAAABBN_01277:0):0.00401043,AS2_ACLBLIBL_01359:0.00399335):0.00167265):0.150261);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000883_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000883_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9ff59429a0605865592e77ce5c5e8d23f10823c3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000883_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01251:0.134551,(AS2_ACLBLIBL_01360:0.0450926,(TT9_LFPAFLNI_01493:5e-09,(KBS0714_MOLHKGIG_01566:0.00753821,SA211_MHAAABBN_01276:0.00250026)0.897:0.00499833)0.984:0.050253)1:0.134551);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000884_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000884_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..52083ce8fe4f755e487d5e47f401d246ea739786
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000884_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01252:0.0817345,(AS2_ACLBLIBL_01361:0.0467481,(SA211_MHAAABBN_01275:5e-09,(KBS0714_MOLHKGIG_01565:0.00627287,TT9_LFPAFLNI_01492:0.00311334)0.67:0.00310511)0.968:0.0319498)1:0.0817345);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000885_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000885_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c79d7a2a41ccc8bec58466c82af097295d618859
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000885_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01253:0.0194341,(AS2_ACLBLIBL_01362:0.0653074,(TT9_LFPAFLNI_01491:5e-09,(KBS0714_MOLHKGIG_01564:0.00153367,SA211_MHAAABBN_01274:0.00153424)0.417:0.00153166)0.973:0.0190284)1:0.0194341);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000886_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000886_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ee884e287b28f0f97131c5231dc966b44e87fffa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000886_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01255:0.0314697,(AS2_ACLBLIBL_01364:0.00909645,((KBS0714_MOLHKGIG_01562:0,SA211_MHAAABBN_01272:0):5e-09,TT9_LFPAFLNI_01489:0.00962633):0.0304963):0.0314697);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000887_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000887_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d9d4c10c129d9f97e83673c84e268f576a06686e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000887_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01256:0.0874122,(AS2_ACLBLIBL_01365:0.0489164,(KBS0714_MOLHKGIG_01561:0.00671362,(SA211_MHAAABBN_01271:0.00258094,TT9_LFPAFLNI_01488:5e-09)0.858:0.00635232)0.999:0.0531238)1:0.0874122);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000888_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000888_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..43f8a5796c5b590417b18e2569ec9e7176495752
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000888_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01257:0.0393277,(AS2_ACLBLIBL_01366:0.0164126,(TT9_LFPAFLNI_01487:5e-09,(KBS0714_MOLHKGIG_01560:0.00472911,SA211_MHAAABBN_01270:0.00235869)0.762:0.00236705)0.825:0.0152807)1:0.0393277);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000893_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000893_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b58589786e9e516de6f8b3afa6e405bf225f49b5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000893_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01262:0.0829287,(AS2_ACLBLIBL_01371:0.0829047,(SA211_MHAAABBN_01264:0.00848791,(KBS0714_MOLHKGIG_01554:5e-09,TT9_LFPAFLNI_01481:0.00327152)0.753:0.00483193)0.982:0.0583908)1:0.0829287);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000895_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000895_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8c53d2189d68cf461d49237a0613cbe173790631
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000895_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01264:0.143603,(AS2_ACLBLIBL_01373:0.132515,(KBS0714_MOLHKGIG_01552:0.0236145,(SA211_MHAAABBN_01262:0.0312865,TT9_LFPAFLNI_01479:6e-09)0.662:0.0111074)0.972:0.0834532)1:0.143603);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000896_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000896_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9dfcffc8b193b3f5a739804879a8418d8a71c805
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000896_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01265:0.223432,(AS2_ACLBLIBL_01374:0.114153,(KBS0714_MOLHKGIG_01551:0.00476888,(TT9_LFPAFLNI_01478:0.0498768,SA211_MHAAABBN_01261:5e-09)0.699:0.0116179)0.985:0.222254)1:0.223432);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000897_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000897_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7e7fd2120949e58731ca36c2c607e11771430689
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000897_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01266:0.0369241,(AS2_ACLBLIBL_01375:0.0182301,(KBS0714_MOLHKGIG_01550:0,SA211_MHAAABBN_01260:0,TT9_LFPAFLNI_01477:0):5e-09):0.0369241);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000898_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000898_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2606fbc7e2910d609b81efb7a288319b247867b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000898_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01268:0.474556,(AS2_ACLBLIBL_01377:0.156515,(TT9_LFPAFLNI_01475:0.00227969,(KBS0714_MOLHKGIG_01548:5e-09,SA211_MHAAABBN_01258:0.003372)0.888:0.0113164)0.966:0.13594)1:0.474556);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000899_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000899_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a6309e3208d9dfe675459f919180a12c92c942f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000899_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01269:0.192761,((AS2_ACLBLIBL_01378:0.134009,TT9_LFPAFLNI_01474:0.00866948)0.585:0.0107505,(KBS0714_MOLHKGIG_01547:5e-09,SA211_MHAAABBN_01257:5e-09)0.721:0.00956964)1:0.192761);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000901_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000901_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..990955d6c1def85bf22966080bc252e0f8aeb948
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000901_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01271:0.183913,(AS2_ACLBLIBL_01380:0.0790995,((KBS0714_MOLHKGIG_01545:0,SA211_MHAAABBN_01255:0):0.00611907,TT9_LFPAFLNI_01472:0.0178224):0.138084):0.183913);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000902_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000902_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..51859385fcf4f4704cf96c3307999f212df8be0e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000902_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01272:0.0731145,(AS2_ACLBLIBL_01381:0.0265972,((KBS0714_MOLHKGIG_01544:0,SA211_MHAAABBN_01254:0):0.00228815,TT9_LFPAFLNI_01471:0.00482499):0.0328416):0.0731145);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000904_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000904_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8c8ecfa07fc2311f0a9e0da37ecc0031aef70b8f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000904_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01274:0.174672,(AS2_ACLBLIBL_01383:0.0812814,(SA211_MHAAABBN_01252:0.00661241,(KBS0714_MOLHKGIG_01542:0.0180325,TT9_LFPAFLNI_01469:0.00322393)0.62:0.00805832)1:0.119127)1:0.174672);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000905_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000905_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f8129404a9bd06f8c056d7dd6a80b9dd44245d33
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000905_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01275:0.0672452,(AS2_ACLBLIBL_01384:0.0446183,(TT9_LFPAFLNI_01468:0.00930505,(KBS0714_MOLHKGIG_01541:0.00183997,SA211_MHAAABBN_01251:0.00369593)0.808:0.00372047)1:0.0525195)1:0.0672452);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000906_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000906_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..86dbc4db7b04d74f2ca9b68f2f8b75d8417fab2e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000906_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01276:0.0705246,(AS2_ACLBLIBL_01385:0.139423,(KBS0714_MOLHKGIG_01540:0.00484267,(SA211_MHAAABBN_01250:0,TT9_LFPAFLNI_01467:0):0.00894414):0.120022):0.0705246);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000907_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000907_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..737ca1c1b945a1d248fb004bbeab21ac687cd1d4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000907_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01278:0.128127,(AS2_ACLBLIBL_01387:0.10818,(KBS0714_MOLHKGIG_01538:0.013615,(SA211_MHAAABBN_01248:0.0191835,TT9_LFPAFLNI_01465:5e-09)0.714:0.0131957)1:0.120908)1:0.128127);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000908_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000908_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1101372d6f3f22d264564c297a6fc657d1f01efd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000908_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01279:0.102529,(AS2_ACLBLIBL_01388:0.0401684,(TT9_LFPAFLNI_01464:0.0128978,(KBS0714_MOLHKGIG_01537:0.0128952,SA211_MHAAABBN_01247:5e-09)0.801:5e-09)0.43:0.0408354)1:0.102529);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000909_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000909_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eafe761e9035b865e6f3ba48c50e989c21867558
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000909_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01280:0.352682,(AS2_ACLBLIBL_01389:0.108024,(SA211_MHAAABBN_01246:6e-09,(KBS0714_MOLHKGIG_01536:0.00893698,TT9_LFPAFLNI_01463:0.0269781)0.837:0.00436621)0.859:0.0648652)1:0.352682);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000911_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000911_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c6ba5f786a16a36507718c48eacd9a0ca875ba42
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000911_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01282:0.0668423,(AS2_ACLBLIBL_01391:0.0657407,((KBS0714_MOLHKGIG_01534:0,TT9_LFPAFLNI_01461:0):5e-09,SA211_MHAAABBN_01244:0.00242318):0.0663916):0.0668423);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000913_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000913_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ba272014c6a85d917f1b134b0415a05f95ed2e13
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000913_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01284:0.0801467,(AS2_ACLBLIBL_01393:0.0833146,(KBS0714_MOLHKGIG_01532:0,SA211_MHAAABBN_01242:0,TT9_LFPAFLNI_01459:0):0.0571559):0.0801467);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000914_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000914_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4cf422230719aa65b8cc44f54d73c4f329a9e601
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000914_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01285:0.0938247,(AS2_ACLBLIBL_01394:0.0804961,((KBS0714_MOLHKGIG_01531:0,TT9_LFPAFLNI_01458:0):5e-09,SA211_MHAAABBN_01241:0.00443924):0.0379389):0.0938247);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000916_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000916_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d2bf7539a5cee836b8ba911cbbf267aa41521da5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000916_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01287:0.420259,(TT9_LFPAFLNI_01456:0.0117578,(AS2_ACLBLIBL_01396:0.018778,(KBS0714_MOLHKGIG_01529:5e-09,SA211_MHAAABBN_01239:0.00365077)0.864:0.00724442)0.673:0.00694518)1:0.420259);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000917_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000917_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b329022b3643fa1bbef7fdcf1180804c7b76f54f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000917_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01288:0.209046,(AS2_ACLBLIBL_01397:0.0406714,((KBS0714_MOLHKGIG_01528:0,SA211_MHAAABBN_01238:0):0.0104775,TT9_LFPAFLNI_01455:0.0205158):0.0573855):0.209046);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000919_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000919_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..95010a672e457a84bc90e0d72bbcf3f9c8ca05a9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000919_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00047:0.146162,(AS2_ACLBLIBL_01399:0.0236874,(TT9_LFPAFLNI_01453:0.00376052,(KBS0714_MOLHKGIG_01526:0.0156753,SA211_MHAAABBN_01235:0.0132318)0.744:0.00293962)0.878:0.0138523)1:0.146162);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000920_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000920_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8122453cb0046521d34cb453ad8d92bd4fbd485b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000920_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01299:0.00601477,(AS2_ACLBLIBL_01400:0.0849719,(KBS0714_MOLHKGIG_01525:0.00592864,(SA211_MHAAABBN_01234:5e-09,TT9_LFPAFLNI_01452:0.00296382)0.914:5e-09)0.324:0.00645434)1:0.00601477);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000921_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000921_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cef02676c2daa0bdd6ab7073a140e08b188fbc30
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000921_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01300:0.016527,(AS2_ACLBLIBL_01401:0.0304606,(KBS0714_MOLHKGIG_01524:0.00671291,(SA211_MHAAABBN_01233:0,TT9_LFPAFLNI_01451:0):5e-09):0.0242755):0.016527);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000923_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000923_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..dd6df764fb716f41b3a20ca69287e169d9e64ccd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000923_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01302:0.233895,(AS2_ACLBLIBL_01403:0.0364161,(TT9_LFPAFLNI_01449:0.0152269,(KBS0714_MOLHKGIG_01522:0.00754195,SA211_MHAAABBN_01231:0.00751967)0.773:0.00767543)0.997:0.250163)1:0.233895);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000924_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000924_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9e7957967cb1821af65ad8671dbbc186b2acdf7e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000924_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01303:0.154605,(AS2_ACLBLIBL_01404:0.0748828,(TT9_LFPAFLNI_01448:0.00261483,(SA211_MHAAABBN_01230:0.0069249,KBS0714_MOLHKGIG_01521:0.00345649)0.634:0.00260706)1:0.0653108)1:0.154605);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000925_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000925_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..34e3e28ce436cc5515af27060979853d7370c9c1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000925_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01304:0.158456,(AS2_ACLBLIBL_01405:0.0827574,(KBS0714_MOLHKGIG_01520:0.00585215,(SA211_MHAAABBN_01229:0.00257795,TT9_LFPAFLNI_01447:0.00427997)0.932:0.00456306)1:0.0510535)1:0.158456);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000926_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000926_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c77082432630213f5b43515add9f89d6af95bc5b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000926_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01305:0.252265,(AS2_ACLBLIBL_01406:0.110117,(SA211_MHAAABBN_01228:0.00329902,(KBS0714_MOLHKGIG_01519:0.0110593,TT9_LFPAFLNI_01446:0.00504374)0.66:0.00775939)0.87:0.0284021)1:0.252265);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000927_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000927_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9c7666092ac74027a4235394c46ec063f25767b3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000927_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01306:0.233527,(AS2_ACLBLIBL_01407:0.0859592,(TT9_LFPAFLNI_01445:0.0103926,(KBS0714_MOLHKGIG_01518:0.00303067,SA211_MHAAABBN_01227:5e-09)0.775:0.00531479)0.978:0.0748953)1:0.233527);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000930_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000930_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2eae65825bf7a70cd8ecbc038bc49c2bd4f6a74a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000930_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01309:0.244709,(AS2_ACLBLIBL_01410:0.245573,((KBS0714_MOLHKGIG_01515:0,SA211_MHAAABBN_01224:0):0.0189718,TT9_LFPAFLNI_01442:0.00340451):0.0868144):0.244709);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000933_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000933_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..63799b081ec40ce96067e5a0f6285c80777f8e49
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000933_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01314:0.0968057,(AS2_ACLBLIBL_01415:0.0221547,(TT9_LFPAFLNI_01437:5e-09,(KBS0714_MOLHKGIG_01487:0.00636512,SA211_MHAAABBN_01219:6e-09)0.423:0.00423135)0.993:0.0538013)1:0.0968057);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000936_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000936_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..928dc84856101b46041e452273b2a355aa057351
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000936_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01318:0.177909,(AS2_ACLBLIBL_01418:0.144704,(TT9_LFPAFLNI_01434:0.00385754,(KBS0714_MOLHKGIG_01484:0.0175558,SA211_MHAAABBN_01216:5e-09)0.754:0.00264312)0.999:0.117298)1:0.177909);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000937_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000937_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ea0717321ff3e6fb804eb9f3b2cad2c0589f6663
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000937_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01319:0.120707,(AS2_ACLBLIBL_01419:0.0267279,(KBS0714_MOLHKGIG_01483:0.017346,(SA211_MHAAABBN_01215:5e-09,TT9_LFPAFLNI_01433:0.0113895)0.746:0.00389901)0.987:0.0610256)1:0.120707);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000938_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000938_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..05fa7fd5ad30f4991f7d030de65e9705c8de43b5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000938_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01320:0.21143,(AS2_ACLBLIBL_01420:0.107655,(KBS0714_MOLHKGIG_01482:0.0162679,(SA211_MHAAABBN_01214:0.00815207,TT9_LFPAFLNI_01432:0.00462201)0.35:0.00734508)0.999:0.119536)1:0.21143);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000939_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000939_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c40abb634c2679559c0b842daa33078944efff75
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000939_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01321:0.073317,(AS2_ACLBLIBL_01421:0.044161,((KBS0714_MOLHKGIG_01481:0,TT9_LFPAFLNI_01431:0):0.00967769,SA211_MHAAABBN_01213:0.00672112):0.0667849):0.073317);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000941_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000941_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..989f58accbf6d52f54bf8ce25cdd4fa73c28c81c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000941_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01323:0.0943794,(AS2_ACLBLIBL_01423:0.312581,(KBS0714_MOLHKGIG_01479:0,SA211_MHAAABBN_01211:0,TT9_LFPAFLNI_01429:0):0.340366):0.0943794);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000944_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000944_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e8d4c9ff0e2337384b8e60903b11b7ca56b13aca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000944_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01328:0.07129,(AS2_ACLBLIBL_01426:0.0382615,(TT9_LFPAFLNI_01424:5e-09,(KBS0714_MOLHKGIG_01474:0.00266365,SA211_MHAAABBN_01206:6e-09)0.888:0.00801974)0.975:0.0370313)1:0.07129);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000947_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000947_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f277b74454c2f458853800ecb78843fc711cdbcd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000947_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01331:0.0508576,(AS2_ACLBLIBL_01429:0.0350028,((KBS0714_MOLHKGIG_01471:0,TT9_LFPAFLNI_01421:0):0.0140191,SA211_MHAAABBN_01203:0.00857113):0.0247197):0.0508576);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000949_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000949_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7ce9bba318e7aeaf74e44ae55312033a8e33af20
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000949_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01334:0.18939,(AS2_ACLBLIBL_01432:0.131089,(SA211_MHAAABBN_01200:5e-09,(TT9_LFPAFLNI_01418:0.0156569,KBS0714_MOLHKGIG_01468:5e-09)0.494:0.00806052)0.997:0.187131)1:0.18939);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000952_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000952_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..de15ae6f543f414e12bbebf061676d3d88cbc23b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000952_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01338:0.202623,(AS2_ACLBLIBL_01435:0.133022,(SA211_MHAAABBN_01197:0.0169723,(KBS0714_MOLHKGIG_01465:0.00566505,TT9_LFPAFLNI_01415:5e-09)0.952:6e-09)0.868:0.0876133)1:0.202623);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000953_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000953_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..11cc831c7a966ee59748b200e7a342c309d8bb95
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000953_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01339:0.259861,(AS2_ACLBLIBL_01436:0.204919,((KBS0714_MOLHKGIG_01464:0,TT9_LFPAFLNI_01414:0):5e-09,SA211_MHAAABBN_01196:0.019981):0.219411):0.259861);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000954_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000954_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f5dceb8d1ac979301cfcc1f5f6bac2acc5a35f56
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000954_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01340:0.295572,(AS2_ACLBLIBL_01437:0.142971,(KBS0714_MOLHKGIG_01463:5e-09,(SA211_MHAAABBN_01195:0.0161997,TT9_LFPAFLNI_01413:5e-09)0.901:0.010826)0.996:0.22511)1:0.295572);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000958_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000958_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6833a294675c07eb3a4d4a0177a5931188be7527
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000958_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01344:0.164244,(AS2_ACLBLIBL_01441:0.0987714,(KBS0714_MOLHKGIG_01459:0,SA211_MHAAABBN_01191:0,TT9_LFPAFLNI_01409:0):0.0696491):0.164244);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000960_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000960_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..81ba2f3c43e73568a71be54d50a5c5686ca11d95
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000960_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01346:0.33794,(AS2_ACLBLIBL_01443:0.20119,(KBS0714_MOLHKGIG_01457:5e-09,(SA211_MHAAABBN_01189:0,TT9_LFPAFLNI_01407:0):0.00621657):0.248437):0.33794);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000964_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000964_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f19d5b9c5d605fc4c7bb95fafd328da7fbc32a76
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000964_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01351:0.136936,((KBS0714_MOLHKGIG_01452:0.0119859,TT9_LFPAFLNI_01402:0.0203546)0.989:0.073254,(AS2_ACLBLIBL_01447:0.0461575,SA211_MHAAABBN_01184:0.0713395)0.993:0.0901061)1:0.136936);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000965_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000965_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9f4b2924df25ea6840da9e13f87c7706ec408a2e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000965_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01352:0.0525115,(SA211_MHAAABBN_01183:0.327972,(AS2_ACLBLIBL_01448:0.0104906,(KBS0714_MOLHKGIG_01451:0.0594445,TT9_LFPAFLNI_01401:0.00186322)0.999:0.30006)0.891:0.0765215)1:0.0525115);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000974_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000974_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3d4f0afde98c3fc488ec9c2a2bea36b24de9c44d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000974_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01367:0.136033,(AS2_ACLBLIBL_01459:0.0869306,(TT9_LFPAFLNI_01389:5e-09,(SA211_MHAAABBN_01171:0.0118236,KBS0714_MOLHKGIG_01439:6e-09)0.642:0.00293238)0.995:0.0879331)1:0.136033);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000976_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000976_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c1789c11a068b90f04b72cf5b4ee94b2f7b766d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000976_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01369:0.0856638,(AS2_ACLBLIBL_01461:0.0558178,(SA211_MHAAABBN_01169:0.00248591,(KBS0714_MOLHKGIG_01437:0.00487034,TT9_LFPAFLNI_01387:0.00985682)0.452:0.00480542)1:0.0956826)1:0.0856638);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000977_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000977_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6f1ef60a3b4453e4863a49aaf7e812253f3c836a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000977_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01370:0.0659774,(AS2_ACLBLIBL_01462:0.03973,(TT9_LFPAFLNI_01386:0.00301258,(KBS0714_MOLHKGIG_01436:0.0029426,SA211_MHAAABBN_01168:5e-09)0.767:0.00287789)0.988:0.0408172)1:0.0659774);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000978_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000978_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6dac20719a53d55d56a16fa4344bddfb14774a36
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000978_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01371:0.108602,(AS2_ACLBLIBL_01463:0.0934779,(TT9_LFPAFLNI_01385:0.00432313,(KBS0714_MOLHKGIG_01435:0.00233658,SA211_MHAAABBN_01167:0.00233453)0.742:0.00501775)0.998:0.0879999)1:0.108602);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000980_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000980_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fec9538fef42f9e54109483e5506a66fbda19b0f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000980_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01373:0.113735,(AS2_ACLBLIBL_01465:0.0542753,(KBS0714_MOLHKGIG_01433:0,SA211_MHAAABBN_01165:0,TT9_LFPAFLNI_01383:0):0.0329822):0.113735);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000981_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000981_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..065bd3cab05f6e34dc24d9a3ce699c3514223461
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000981_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01374:0.185521,(AS2_ACLBLIBL_01467:0.120485,(TT9_LFPAFLNI_01382:0.00307426,(KBS0714_MOLHKGIG_01432:0.0119077,SA211_MHAAABBN_01164:0.00560496)0.772:0.00294296)0.924:0.0537735)1:0.185521);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000983_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000983_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a4d74e273e75a404ff633ec4c7f17a4b49dd93dd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000983_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01376:0.0581643,(AS2_ACLBLIBL_01469:0.0413807,(SA211_MHAAABBN_01162:0.00205241,(KBS0714_MOLHKGIG_01430:0.00404957,TT9_LFPAFLNI_01380:5e-09)0.413:0.00405457)0.966:0.0254736)1:0.0581643);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000985_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000985_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5d953e1b8285cc40e63ca1b21855c730f6b11966
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000985_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01378:0.073294,(AS2_ACLBLIBL_01471:0.0574691,(SA211_MHAAABBN_01159:0.00684174,(KBS0714_MOLHKGIG_01428:5e-09,TT9_LFPAFLNI_01378:0.00220515)0.825:0.00425394)0.986:0.040638)1:0.073294);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000986_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000986_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..77b3a39f807af48b04577a37d081e9d94dd0eb72
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000986_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01383:0.142753,(AS2_ACLBLIBL_01475:0.144255,(KBS0714_MOLHKGIG_01424:0.0364005,(SA211_MHAAABBN_01155:0,TT9_LFPAFLNI_01374:0):5e-09):0.100235):0.142753);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000987_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000987_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..50d80f322a4798d7e6266d0d2adfb53555f70d71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000987_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01384:0.157731,(AS2_ACLBLIBL_01476:0.0959353,(KBS0714_MOLHKGIG_01423:0.0210542,(SA211_MHAAABBN_01154:0,TT9_LFPAFLNI_01373:0):0.00443265):0.127137):0.157731);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000990_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000990_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..41756a03a8b142c0218c13d39c14fe089b42f5ea
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000990_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01387:0.103205,(AS2_ACLBLIBL_01479:0.0485773,(KBS0714_MOLHKGIG_01420:0.0325846,(SA211_MHAAABBN_01151:0.00334528,TT9_LFPAFLNI_01370:0.00334667)0.899:5e-09)0.932:0.031767)1:0.103205);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000992_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000992_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cf9913f8dec83c358b219c82c9673402540351cc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000992_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01389:0.144118,(TT9_LFPAFLNI_01368:0.0262648,(SA211_MHAAABBN_01149:5e-09,(KBS0714_MOLHKGIG_01418:0.0214562,AS2_ACLBLIBL_01481:0.00589461)0.877:0.00592613)0.79:0.0194238)1:0.144118);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000994_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000994_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..356cd82dbd346bfc2d778ee74a2dcd73097b2df0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0000994_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01391:0.00828786,(AS2_ACLBLIBL_01484:0.0293645,(TT9_LFPAFLNI_01365:5e-09,(KBS0714_MOLHKGIG_01415:0.00818934,SA211_MHAAABBN_01146:0.00173904)0.941:0.0126672)0.964:0.019489)1:0.00828786);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001001_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001001_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d2646a8de49ef1ad936e35162d74fcc701f0816d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001001_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01404:0.415627,(AS2_ACLBLIBL_01492:0.135582,(KBS0714_MOLHKGIG_01403:0.012178,(SA211_MHAAABBN_01133:0,TT9_LFPAFLNI_01353:0):0.00550554):0.152048):0.415627);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001003_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001003_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7fcb9ec4bfbdbe7152daeddb2b44e6379117929a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001003_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01407:0.13028,(AS2_ACLBLIBL_01512:0.0384695,((KBS0714_MOLHKGIG_01380:0,TT9_LFPAFLNI_01335:0):5e-09,SA211_MHAAABBN_01100:0.00758838):0.0253063):0.13028);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001004_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001004_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..07aae2dd9b2545a0589d2eb78e4c6b1cf80147ef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001004_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01408:0.180178,(AS2_ACLBLIBL_01513:0.119243,(KBS0714_MOLHKGIG_01379:5e-09,(SA211_MHAAABBN_01099:0,TT9_LFPAFLNI_01334:0):0.0139244):0.0414146):0.180178);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001006_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001006_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1468ed3b036feff9306856cb61d65791648cfb36
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001006_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01410:0.209589,(AS2_ACLBLIBL_01515:0.0768983,(TT9_LFPAFLNI_01332:0.0120666,(KBS0714_MOLHKGIG_01377:0.00567093,SA211_MHAAABBN_01097:0.0116059)0.764:0.00521819)0.912:0.0554767)1:0.209589);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001007_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001007_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cc156189fe4a4f776775d799d4bec874f47e1630
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001007_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01411:0.090208,(AS2_ACLBLIBL_01516:0.0259163,(TT9_LFPAFLNI_01331:0.00953291,(KBS0714_MOLHKGIG_01376:5e-09,SA211_MHAAABBN_01096:0.00534655)0.876:0.0131898)0.865:0.0175083)1:0.090208);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001011_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001011_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f1a903f1bdfc13cbd6135ed86ea10ef022089136
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001011_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01416:0.143823,(AS2_ACLBLIBL_01520:0.0924355,((KBS0714_MOLHKGIG_01372:0,TT9_LFPAFLNI_01327:0):0.00501651,SA211_MHAAABBN_01092:0.00265858):0.143683):0.143823);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001012_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001012_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..83f0acd77b91c0814b58b43bd820e2d1c5a5a997
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001012_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01417:0.0649071,(AS2_ACLBLIBL_01521:0.0713415,(SA211_MHAAABBN_01091:0.038968,(KBS0714_MOLHKGIG_01371:5e-09,TT9_LFPAFLNI_01326:0.00856846)0.299:0.0048674)0.915:0.0320285)1:0.0649071);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001013_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001013_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5868786a6f9ef2a6d52d04c8611178f2e0a2757c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001013_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01418:0.0668969,(AS2_ACLBLIBL_01522:0.0160504,((KBS0714_MOLHKGIG_01370:0,TT9_LFPAFLNI_01325:0):5e-09,SA211_MHAAABBN_01090:0.00209317):0.00727548):0.0668969);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001015_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001015_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..111ba02887dfb919b754d9a6a76f2510cd88e5bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001015_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01421:0.110597,(AS2_ACLBLIBL_01526:0.0623918,((KBS0714_MOLHKGIG_01367:0,SA211_MHAAABBN_01087:0):0.0073275,TT9_LFPAFLNI_01322:5e-09):0.0683241):0.110597);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001016_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001016_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cd167a0ce29df52cbb82a2e8c308b47fdb4dc370
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001016_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01422:0.148927,(AS2_ACLBLIBL_01527:0.0956106,(TT9_LFPAFLNI_01321:0.00521171,(KBS0714_MOLHKGIG_01366:0.00802747,SA211_MHAAABBN_01086:0.00802496)0.822:0.00552451)1:0.147052)1:0.148927);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001018_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001018_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d938e6d89bfc3067fc80b4dc0bb9ba504a9074cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001018_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01424:0.335036,(AS2_ACLBLIBL_01529:0.184215,(KBS0714_MOLHKGIG_01364:0,SA211_MHAAABBN_01084:0,TT9_LFPAFLNI_01319:0):0.162903):0.335036);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001023_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001023_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..68d5d3dc3529d1838ebd06d85d251bbe95320639
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001023_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01429:0.124131,(AS2_ACLBLIBL_01534:0.101114,(SA211_MHAAABBN_01079:0.0179843,(KBS0714_MOLHKGIG_01359:0.00670271,TT9_LFPAFLNI_01314:0.00326799)0.911:0.0111797)1:0.0914694)1:0.124131);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001024_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001024_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b91a6daf7a44e2219e4b9e1d0f6f25157f7e8702
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001024_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01430:0.0553245,(AS2_ACLBLIBL_01535:0.0832429,(SA211_MHAAABBN_01078:0.00394935,(KBS0714_MOLHKGIG_01358:0.00396096,TT9_LFPAFLNI_01313:0.00152289)0.363:0.00184506)0.999:0.0549676)1:0.0553245);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001029_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001029_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4377c8f76326d35f9b0358c2f0dfb55af3e4d61f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001029_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01436:0.333734,(AS2_ACLBLIBL_01540:0.247477,(KBS0714_MOLHKGIG_01352:0.00970588,(SA211_MHAAABBN_01072:0.0232392,TT9_LFPAFLNI_01307:0.0113)0.369:0.0138812)0.993:0.203854)1:0.333734);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001030_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001030_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..881d6e08792d2d6e2204001bdf97ff0ef2ef1928
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001030_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01437:0.0203659,(AS2_ACLBLIBL_01541:0.0335923,(SA211_MHAAABBN_01071:0.00490598,(KBS0714_MOLHKGIG_01351:5e-09,TT9_LFPAFLNI_01306:0.00844516)0.825:5e-09)0.989:0.0284659)1:0.0203659);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001031_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001031_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e2a4a0a61467496f6b4cefa187581c524babdc71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001031_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01438:0.226962,(AS2_ACLBLIBL_01542:0.192634,(TT9_LFPAFLNI_01305:0.020589,(KBS0714_MOLHKGIG_01350:0.0234947,SA211_MHAAABBN_01070:0.0105036)0.719:0.00782614)0.977:0.116489)1:0.226962);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001032_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001032_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6e28c610f3436aa50e8add3bf6b248b52639454d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001032_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01439:0.127076,(AS2_ACLBLIBL_01543:0.0718907,(SA211_MHAAABBN_01069:0.0118956,(KBS0714_MOLHKGIG_01349:0.0113188,TT9_LFPAFLNI_01304:0.0112459)0.051:0.00718847)0.998:0.128494)1:0.127076);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001033_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001033_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..10b75b372e585681b6d7633c719246d1f07ff19b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001033_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01440:0.130378,(AS2_ACLBLIBL_01544:0.111443,(SA211_MHAAABBN_01068:0.0138518,(KBS0714_MOLHKGIG_01348:0.00460778,TT9_LFPAFLNI_01303:0.00460514)0.866:5e-09)0.973:0.0921969)1:0.130378);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001034_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001034_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ad8888f39d143dad2a502ad2c7b3bfdfe444b77e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001034_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01441:0.148156,(AS2_ACLBLIBL_01545:0.0358104,(KBS0714_MOLHKGIG_01347:0.0205589,(SA211_MHAAABBN_01067:0,TT9_LFPAFLNI_01302:0):5e-09):0.107424):0.148156);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001038_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001038_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..208983bac04b7a88a85c010e397079709be4b9f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001038_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01445:0.0439035,(AS2_ACLBLIBL_01549:0.0200571,(SA211_MHAAABBN_01063:0.00311725,(KBS0714_MOLHKGIG_01343:0.000838914,TT9_LFPAFLNI_01298:0.000838733)0.718:0.00112378)0.996:0.0168076)1:0.0439035);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001043_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001043_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bf669ea214d2b986cb737e98b7079c9b36d950c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001043_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01451:0.0573902,(AS2_ACLBLIBL_01555:0.0132295,(SA211_MHAAABBN_01057:6e-09,(KBS0714_MOLHKGIG_01336:0.00898179,TT9_LFPAFLNI_01292:0.00450856)0.962:0.0137388)0.984:0.0241943)1:0.0573902);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001044_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001044_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7c38e67ef29e271fe26d3657d20fa79011db4d34
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001044_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01452:0.148072,(AS2_ACLBLIBL_01556:0.0566969,(KBS0714_MOLHKGIG_01335:0.0142839,(SA211_MHAAABBN_01056:0.0174164,TT9_LFPAFLNI_01291:5e-09)0.87:0.0041507)0.997:0.0393793)1:0.148072);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001045_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001045_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2b53a45985520975671d524a9d2c29e450145d5a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001045_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01454:0.0598146,(AS2_ACLBLIBL_01558:0.00565237,((KBS0714_MOLHKGIG_01333:0,SA211_MHAAABBN_01054:0):0.000942236,TT9_LFPAFLNI_01289:0.0204575):0.00399297):0.0598146);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001046_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001046_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..675678a8e9214cb16fccdc10fb308b507875d448
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001046_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01455:0.0835999,((AS2_ACLBLIBL_01559:0,KBS0714_MOLHKGIG_01332:0,SA211_MHAAABBN_01053:0):0.120401,TT9_LFPAFLNI_01288:0.140901):0.0835999);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001047_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001047_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9e75f9204e360224ab1f9d788cab929092bc7cda
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001047_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01456:0.186925,(AS2_ACLBLIBL_01560:0.0483998,(TT9_LFPAFLNI_01287:0.00366708,(SA211_MHAAABBN_01052:0.00368068,KBS0714_MOLHKGIG_01331:5e-09)0.402:5e-09)0.987:0.0739005)1:0.186925);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001048_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001048_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0d7e76b542e5739782c6613e58dd67942350841c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001048_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01457:0.0415082,(AS2_ACLBLIBL_01561:0.021603,((KBS0714_MOLHKGIG_01330:0,TT9_LFPAFLNI_01286:0):5e-09,SA211_MHAAABBN_01051:0.00299689):0.00261763):0.0415082);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001050_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001050_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..409211bed593308f5e3ed5c2a8b39276bac7c6f4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001050_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01459:0.344473,(AS2_ACLBLIBL_01563:0.0296967,(TT9_LFPAFLNI_01284:0.00542818,(KBS0714_MOLHKGIG_01328:5e-09,SA211_MHAAABBN_01049:0.00179796)0.976:0.0108236)0.438:0.0128792)1:0.344473);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001051_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001051_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d852db19aaf8ca251d66fdc6f48d0219a1dcc522
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001051_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01460:0.0914322,(SA211_MHAAABBN_01048:0.00859493,((AS2_ACLBLIBL_01564:0,KBS0714_MOLHKGIG_01327:0):5e-09,TT9_LFPAFLNI_01283:0.00855209):5e-09):0.0914322);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001054_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001054_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a9ee74ada6ac98aa716b6cb304273d8acc2dc93f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001054_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01463:0.102715,(AS2_ACLBLIBL_01567:0.100875,(SA211_MHAAABBN_01045:6e-09,(KBS0714_MOLHKGIG_01324:0.00950796,TT9_LFPAFLNI_01280:0.00380434)0.929:0.00952077)0.984:0.0430542)1:0.102715);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001057_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001057_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..91f6bc97da424b9177613ff7c4d0e539fba21b40
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001057_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01466:0.0956163,(AS2_ACLBLIBL_01570:0.0710192,(TT9_LFPAFLNI_01277:0.00275302,(KBS0714_MOLHKGIG_01321:5e-09,SA211_MHAAABBN_01042:0.0162939)0.962:0.010332)0.995:0.054615)1:0.0956163);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001059_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001059_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..86bd232f9019bcadbebaba07fcd665f0fdaf398b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001059_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01468:0.0414952,(AS2_ACLBLIBL_01572:0.0299217,(TT9_LFPAFLNI_01275:0.00237712,(KBS0714_MOLHKGIG_01319:0.00278035,SA211_MHAAABBN_01040:0.00139004)0.611:0.000397999)0.42:0.00660389)1:0.0414952);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001060_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001060_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8d7f49dda3e50c8b7ed501ced3b8ca9b8a564fee
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001060_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01470:0.081894,(AS2_ACLBLIBL_01574:0.026259,(KBS0714_MOLHKGIG_01318:5e-09,(SA211_MHAAABBN_01039:0.00275598,TT9_LFPAFLNI_01274:0.00827678)0.979:0.0167478)0.97:0.0309677)1:0.081894);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001061_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001061_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b4e80459e89e4fbcb672dd825f6a14c5b55754cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001061_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01471:0.117606,(AS2_ACLBLIBL_01575:0.0372644,(KBS0714_MOLHKGIG_01317:0.00404461,(SA211_MHAAABBN_01038:0.0106633,TT9_LFPAFLNI_01273:0.00282957)1:0.0293644)1:0.0476177)1:0.117606);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001063_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001063_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f080b3d44acf3a270ecf81de84b2af0305e6a873
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001063_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01475:0.0306904,((SA211_MHAAABBN_01036:0,TT9_LFPAFLNI_01271:0):0.145448,(AS2_ACLBLIBL_01579:0.00386195,KBS0714_MOLHKGIG_01313:5e-09):0.059596):0.0306904);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001066_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001066_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b0881ba58ab833cf20395b74dd8248d92a565268
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001066_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01478:0.0766373,((SA211_MHAAABBN_01033:0,TT9_LFPAFLNI_01268:0):0.041536,(AS2_ACLBLIBL_01582:0.00999278,KBS0714_MOLHKGIG_01310:0.0048749):0.0346446):0.0766373);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001067_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001067_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b5591c5eb891f21c419c6fa33efde03b8663cd1c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001067_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01479:0.09647,(AS2_ACLBLIBL_01583:0.0453395,(KBS0714_MOLHKGIG_01309:0.0150269,(SA211_MHAAABBN_01032:0,TT9_LFPAFLNI_01267:0):0.00117694):0.0628016):0.09647);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001068_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001068_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..55cc26f9fc19e5a774dd1497e23d05c4fe920aa4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001068_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01480:0.162209,(AS2_ACLBLIBL_01584:0.0740484,(KBS0714_MOLHKGIG_01308:0.008787,(SA211_MHAAABBN_01031:0,TT9_LFPAFLNI_01266:0):0.00448112):0.0573976):0.162209);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001075_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001075_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..77d9be9c4ecae9035ba6e1286170a89847e20e5b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001075_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01488:0.222927,(AS2_ACLBLIBL_01592:0.035672,(KBS0714_MOLHKGIG_01300:0,SA211_MHAAABBN_01023:0,TT9_LFPAFLNI_01258:0):0.127061):0.222927);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001076_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001076_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3eedcf9c8bcc8fc402b616582030f7a573fdca69
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001076_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01489:0.0911451,(AS2_ACLBLIBL_01593:0.0866856,(KBS0714_MOLHKGIG_01299:0,SA211_MHAAABBN_01022:0,TT9_LFPAFLNI_01257:0):0.0704962):0.0911451);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001078_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001078_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a734fa68e8c72d78cf9fa18aad4ec5aed3491b06
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001078_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01491:0.148955,(AS2_ACLBLIBL_01595:0.0706724,(KBS0714_MOLHKGIG_01297:0,SA211_MHAAABBN_01020:0,TT9_LFPAFLNI_01255:0):0.0953964):0.148955);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001079_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001079_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..364d43e98a84e945f0e3c9ce104b91485e5c7e98
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001079_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01492:0.103656,(AS2_ACLBLIBL_01596:0.0395592,(KBS0714_MOLHKGIG_01296:0,SA211_MHAAABBN_01019:0,TT9_LFPAFLNI_01254:0):0.0290522):0.103656);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001080_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001080_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ced5cedae564e3c0cb722847f11af82c9d0b560f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001080_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01493:0.0342155,(AS2_ACLBLIBL_01597:0.010496,((KBS0714_MOLHKGIG_01295:0,SA211_MHAAABBN_01018:0):0.00109017,TT9_LFPAFLNI_01253:6e-09):0.018703):0.0342155);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001081_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001081_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a847ea64f6042c2669c46ea40a73f3b05b9eba3a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001081_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01494:0.0624822,(AS2_ACLBLIBL_01598:0.0381298,(TT9_LFPAFLNI_01245:0.00291908,(KBS0714_MOLHKGIG_01287:0.00145488,SA211_MHAAABBN_01006:5e-09)0.925:6e-09)0.996:0.0322865)1:0.0624822);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001082_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001082_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d83dcd6249ba55ff59ded90f932f22e877f61099
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001082_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01495:0.200244,(AS2_ACLBLIBL_01599:0.0836434,(KBS0714_MOLHKGIG_01286:0.0239149,(SA211_MHAAABBN_01005:0,TT9_LFPAFLNI_01244:0):0.0107792):0.0936544):0.200244);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001084_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001084_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7552d0c1a593c489aee2807098941e8d16f89706
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001084_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01498:0.215553,(AS2_ACLBLIBL_01602:0.150286,(KBS0714_MOLHKGIG_01283:0.000873251,(SA211_MHAAABBN_01002:0,TT9_LFPAFLNI_01241:0):0.0397047):0.0668646):0.215553);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001088_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001088_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d7b08a7f5454ef1d1f4058d864331d1da5ebfd03
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001088_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01501:0.1179,(AS2_ACLBLIBL_01606:0.254276,(KBS0714_MOLHKGIG_01280:5e-09,(SA211_MHAAABBN_00999:0.00471623,TT9_LFPAFLNI_01238:5e-09)0.806:0.00235803)0.993:0.0798706)1:0.1179);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001092_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001092_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0624f77ea1dcc5cc2036b0bc3d07e7794adb1eec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001092_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01506:0.094036,(AS2_ACLBLIBL_01611:0.0798873,(KBS0714_MOLHKGIG_01276:0.00351537,(SA211_MHAAABBN_00995:5e-09,TT9_LFPAFLNI_01234:0.00142274)0.932:0.00656378)0.998:0.0559085)1:0.094036);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001093_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001093_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2705fbbd5325fdbdf078a7411c457d55ab878afc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001093_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01507:0.0404733,(AS2_ACLBLIBL_01612:0.0618567,(KBS0714_MOLHKGIG_01275:0,SA211_MHAAABBN_00994:0,TT9_LFPAFLNI_01233:0):0.0660979):0.0404733);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001095_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001095_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a935daf7e325ad65aaee9e31eb979f0b2f3775d4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001095_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01509:0.103607,(AS2_ACLBLIBL_01614:0.072492,(KBS0714_MOLHKGIG_01273:0.00454017,(SA211_MHAAABBN_00992:0,TT9_LFPAFLNI_01231:0):5e-09):0.0562744):0.103607);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001096_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001096_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9360564beb91ac940a5fc8478f456ffc3efb4e98
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001096_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01511:0.247831,(AS2_ACLBLIBL_01616:0.0693543,(KBS0714_MOLHKGIG_01271:0.00683969,(SA211_MHAAABBN_00990:0,TT9_LFPAFLNI_01229:0):5e-09):0.095283):0.247831);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001097_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001097_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..aa0a3662a2b4a46aac5c229224bd44a453314b60
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001097_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01512:0.106649,(AS2_ACLBLIBL_01617:0.101481,(KBS0714_MOLHKGIG_01270:5e-09,(SA211_MHAAABBN_00989:0,TT9_LFPAFLNI_01228:0):0.00325626):0.0601401):0.106649);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001098_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001098_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..65464e16a8f3a4c207e2ccc5d8c76ea0843bdf15
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001098_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01513:0.113209,(AS2_ACLBLIBL_01618:0.0322528,(KBS0714_MOLHKGIG_01269:0,SA211_MHAAABBN_00988:0,TT9_LFPAFLNI_01227:0):0.0524801):0.113209);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001100_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001100_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c12b192516388e66b89f8e8d1c896fd0b7b59014
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001100_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01515:0.249589,(AS2_ACLBLIBL_01620:0.189392,(KBS0714_MOLHKGIG_01267:0.00639543,(SA211_MHAAABBN_00986:0,TT9_LFPAFLNI_01225:0):0.0189169):0.14657):0.249589);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001102_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001102_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..66653e107bb4db4f205b2e908e32dcd8b97531cf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001102_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01517:0.0519083,(AS2_ACLBLIBL_01622:0.0314408,(KBS0714_MOLHKGIG_01265:0.00612265,(SA211_MHAAABBN_00984:0,TT9_LFPAFLNI_01223:0):0.00921069):0.0297086):0.0519083);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001103_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001103_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1727c1eb7058d17151c81a71f775d022ec6136b2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001103_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01520:0.13861,(AS2_ACLBLIBL_01623:0.117296,(KBS0714_MOLHKGIG_01264:0.019443,(SA211_MHAAABBN_00983:0.00460241,TT9_LFPAFLNI_01222:5e-09)0.72:0.00376014)0.999:0.0748924)1:0.13861);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001108_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001108_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eb0205bce19094523f100f753c212de833662c75
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001108_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01527:0.186553,(AS2_ACLBLIBL_01629:0.124893,(KBS0714_MOLHKGIG_01258:0,SA211_MHAAABBN_00977:0,TT9_LFPAFLNI_01216:0):0.226126):0.186553);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001109_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001109_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2067528a8c72707d6dce5165127cee6e1426927b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001109_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01528:0.0023814,(AS2_ACLBLIBL_01630:5e-09,(KBS0714_MOLHKGIG_01257:5e-09,(SA211_MHAAABBN_00976:0,TT9_LFPAFLNI_01215:0):0.00477853):0.00958802):0.0023814);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001110_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001110_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..61d6a329386f3c257149ea384417298db54cd2b1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001110_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01529:0.376612,(AS2_ACLBLIBL_01632:0.0805766,(KBS0714_MOLHKGIG_01256:0,SA211_MHAAABBN_00975:0,TT9_LFPAFLNI_01214:0):0.194563):0.376612);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001112_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001112_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c9bf985e0efd8714acc208c27002b301afba5398
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001112_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01531:0.166503,(AS2_ACLBLIBL_01634:0.0874721,(KBS0714_MOLHKGIG_01254:0.0115542,(SA211_MHAAABBN_00973:0.00572609,TT9_LFPAFLNI_01212:5e-09)0.859:0.0121592)0.682:0.0212354)1:0.166503);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001114_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001114_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7b1f7673f94b2157d44251fffca33a9ce64f7a8a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001114_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01534:0.029537,(AS2_ACLBLIBL_01637:0.0273814,(KBS0714_MOLHKGIG_01251:0.00278903,(SA211_MHAAABBN_00970:5e-09,TT9_LFPAFLNI_01209:0.00240939)0.893:0.00695513)0.994:0.0337823)1:0.029537);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001120_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001120_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..06a9684ca68723cb94e43920ace2886df12bb4ba
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001120_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01540:0.0800257,(AS2_ACLBLIBL_01643:0.0394278,((KBS0714_MOLHKGIG_01245:0,SA211_MHAAABBN_00964:0):5e-09,TT9_LFPAFLNI_01203:0.0059041):0.00922539):0.0800257);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001122_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001122_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fc6f3bef2fd8fe20d7865fd6f28d4912e31268ab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001122_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01543:0.0904146,(AS2_ACLBLIBL_01646:0.0319502,((KBS0714_MOLHKGIG_01242:0,TT9_LFPAFLNI_01200:0):0.0025505,SA211_MHAAABBN_00961:0.00247625):0.0316473):0.0904146);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001123_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001123_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8de4e1f42b23a9f52b6744e77d16756c1f3e721f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001123_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01544:0.037129,(AS2_ACLBLIBL_01647:0.0223863,((KBS0714_MOLHKGIG_01241:0,TT9_LFPAFLNI_01199:0):5e-09,SA211_MHAAABBN_00960:0.000884569):0.0169484):0.037129);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001126_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001126_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6dc2b8ef7c70457c2e77dfe23f33bae7c350ff09
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001126_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01547:0.101278,(AS2_ACLBLIBL_01650:0.028801,(KBS0714_MOLHKGIG_01238:0.00462908,(SA211_MHAAABBN_00957:0,TT9_LFPAFLNI_01196:0):5e-09):0.0458569):0.101278);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001128_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001128_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..340bd69505b78f65813faf90537398a4760d3dcd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001128_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01549:0.121143,(AS2_ACLBLIBL_01652:0.0853002,(KBS0714_MOLHKGIG_01236:0.0138221,(SA211_MHAAABBN_00955:5e-09,TT9_LFPAFLNI_01194:0.00225064)0.929:0.0164562)0.958:0.0360139)1:0.121143);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001129_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001129_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bf092f4901620067eec6f74174d7153215d221e3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001129_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01550:0.0577237,(AS2_ACLBLIBL_01653:0.02506,(KBS0714_MOLHKGIG_01235:0.0045999,(SA211_MHAAABBN_00954:5e-09,TT9_LFPAFLNI_01193:0.0022983)0.892:6e-09)0.945:0.0162058)1:0.0577237);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001131_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001131_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c1b399122f0f8ab188e74b4f252e4466321771ce
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001131_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01552:0.117377,(AS2_ACLBLIBL_01655:0.128229,(TT9_LFPAFLNI_01191:0.0128002,(KBS0714_MOLHKGIG_01233:0.0347476,SA211_MHAAABBN_00952:0.0272318)0.909:0.0145722)0.987:0.0987666)1:0.117377);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001133_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001133_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c50ddc6746c8df4ce0ab054eca83efb246ce240a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001133_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01554:0.0453156,(AS2_ACLBLIBL_01657:0.0332945,(KBS0714_MOLHKGIG_01231:0.00538494,(SA211_MHAAABBN_00950:0,TT9_LFPAFLNI_01189:0):0.004235):0.0285051):0.0453156);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001140_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001140_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b3560e8d2020423e7fe4e23ac1019180e7d0a4ef
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001140_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01561:0.0298749,(AS2_ACLBLIBL_01664:0.0164595,(KBS0714_MOLHKGIG_01224:0.00902098,(SA211_MHAAABBN_00943:0.0031836,TT9_LFPAFLNI_01182:5e-09)0.501:0.00415048)0.987:0.0237042)1:0.0298749);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001141_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001141_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..25b1b962725daaf3b8b36d85276144c8d94fd3d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001141_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01563:0.223326,(AS2_ACLBLIBL_01666:0.0557317,((KBS0714_MOLHKGIG_01222:0,SA211_MHAAABBN_00941:0):5e-09,TT9_LFPAFLNI_01180:0.00738119):0.0659509):0.223326);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001143_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001143_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f634fc8a07b5c5845be9ec7f4eff069312b9fd17
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001143_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01565:0.0819215,(AS2_ACLBLIBL_01668:0.0388258,(SA211_MHAAABBN_00939:5e-09,(KBS0714_MOLHKGIG_01220:0.00571701,TT9_LFPAFLNI_01178:5e-09)0.941:0.00857443)0.997:0.0634361)1:0.0819215);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001145_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001145_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..281804b7a5737a0b13e7268e2fa60959f4981a99
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001145_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01567:0.118859,(AS2_ACLBLIBL_01670:0.0592686,(KBS0714_MOLHKGIG_01218:5e-09,(SA211_MHAAABBN_00937:0.00386063,TT9_LFPAFLNI_01176:5e-09)0.843:0.00384596)0.996:0.0823526)1:0.118859);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001146_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001146_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d6f7240600e1c1b359123c32ffd6b841808ef927
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001146_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01568:0.0915303,(AS2_ACLBLIBL_01671:0.0343919,(KBS0714_MOLHKGIG_01217:0,SA211_MHAAABBN_00936:0,TT9_LFPAFLNI_01174:0):0.040681):0.0915303);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001147_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001147_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4a4531f20c86f8c0aa61ccc2e262eb4a3f195b62
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001147_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01569:0.0545433,(AS2_ACLBLIBL_01672:0.0644057,(KBS0714_MOLHKGIG_01216:0,SA211_MHAAABBN_00935:0,TT9_LFPAFLNI_01173:0):0.0333245):0.0545433);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001148_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001148_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eeb2d79e285832251e3a82621bce9c8c500a685e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001148_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01570:0.135824,(AS2_ACLBLIBL_01673:0.0598757,((KBS0714_MOLHKGIG_01215:0,TT9_LFPAFLNI_01172:0):0.000820604,SA211_MHAAABBN_00934:0.00804433):0.0575432):0.135824);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001149_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001149_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..693b5487e8594a622e07cb728cec398378ab241c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001149_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01571:0.0809757,(AS2_ACLBLIBL_01674:0.0291493,(KBS0714_MOLHKGIG_01214:0.00311972,(SA211_MHAAABBN_00933:5e-09,TT9_LFPAFLNI_01171:0.00311378)0.779:5e-09)0.977:0.0309655)1:0.0809757);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001150_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001150_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..48793134a4eb14843040721736c75cead7b803c7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001150_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01572:0.0378229,(AS2_ACLBLIBL_01675:0.0199608,(SA211_MHAAABBN_00932:0.00461279,(KBS0714_MOLHKGIG_01213:0.00171183,TT9_LFPAFLNI_01170:5e-09)0.719:0.00226074)0.991:0.0342139)1:0.0378229);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001155_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001155_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..849add6c95514b5412fda63d6c05bc49739609a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001155_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01578:0.108351,(AS2_ACLBLIBL_01680:0.0609061,(SA211_MHAAABBN_00926:0.0103929,(KBS0714_MOLHKGIG_01207:0.0130804,TT9_LFPAFLNI_01164:0.00795934)0.607:0.00233376)0.997:0.055475)1:0.108351);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001157_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001157_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7a9f9136e29847ca5bc94800225152c1cf858520
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001157_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01580:0.100304,(AS2_ACLBLIBL_01682:0.0224237,(SA211_MHAAABBN_00924:0.00783915,(TT9_LFPAFLNI_01162:0.0071006,KBS0714_MOLHKGIG_01205:0.0213655)0.714:0.00270227)0.872:0.0205855)1:0.100304);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001158_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001158_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..531f70aaff6326fe0225a6f05f5e27ef95f44b9f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001158_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01581:0.0186315,(AS2_ACLBLIBL_01683:0.00283777,(TT9_LFPAFLNI_01161:0.00110054,(KBS0714_MOLHKGIG_01204:0.0294237,SA211_MHAAABBN_00923:0.0094858)0.703:0.00624506)1:0.0308583)1:0.0186315);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001159_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001159_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0fbef3f55fc105bf1eeb38347cd8e5e89b05e847
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001159_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01582:0.107515,(AS2_ACLBLIBL_01684:0.0500151,(SA211_MHAAABBN_00922:0.0219585,(KBS0714_MOLHKGIG_01203:0.0237404,TT9_LFPAFLNI_01160:0.0175377)0.982:0.0825781)0.953:0.065314)1:0.107515);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001161_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001161_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..61f0f2d4baa42cf21476ae25381b02bb1e106d80
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001161_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01584:0.0642171,(AS2_ACLBLIBL_01687:0.0152159,(TT9_LFPAFLNI_01154:0.00547848,(KBS0714_MOLHKGIG_01200:0.014173,SA211_MHAAABBN_00920:6e-09)0.757:0.00339712)0.446:0.0075677)1:0.0642171);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001163_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001163_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..423172023dc816c9044056101d7e3857e6435baf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001163_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01586:0.0392082,(AS2_ACLBLIBL_01689:0.0146083,(KBS0714_MOLHKGIG_01198:0,SA211_MHAAABBN_00918:0,TT9_LFPAFLNI_01152:0):0.00822285):0.0392082);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001165_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001165_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0a98b3bc14cb0dff41a45ef05c4a18d5a18f0e28
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001165_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01589:0.0778183,(TT9_LFPAFLNI_01150:5e-09,(AS2_ACLBLIBL_01691:0.0536621,(KBS0714_MOLHKGIG_01196:0.0103446,SA211_MHAAABBN_00916:5e-09)0:5e-09)0.446:0.0103446)1:0.0778183);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001166_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001166_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a644b525b4f3e855810e46c235e2bf21ef3a32de
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001166_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01590:0.239093,(AS2_ACLBLIBL_01692:0.21446,(SA211_MHAAABBN_00915:5e-09,(TT9_LFPAFLNI_01149:0.0380141,KBS0714_MOLHKGIG_01195:0.0303531)0.393:0.0224701)0.994:0.221971)1:0.239093);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001170_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001170_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..630b99e441dd78117be54f74686025321b263ba5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001170_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01596:0.259417,(AS2_ACLBLIBL_01697:0.0520508,((KBS0714_MOLHKGIG_01191:0,TT9_LFPAFLNI_01141:0):0.00605528,SA211_MHAAABBN_00910:0.00682789):0.0624215):0.259417);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001172_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001172_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3ebf18d489c49a1f1c6ddccb802bfb11a27eef40
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001172_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01598:0.0909151,((KBS0714_MOLHKGIG_01189:0,TT9_LFPAFLNI_01139:0):5e-09,(AS2_ACLBLIBL_01699:0.0354355,SA211_MHAAABBN_00908:5e-09):0.00856798):0.0909151);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001174_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001174_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..018a41ab6e988ecbd02540150e815a26a308e933
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001174_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01600:0.168153,(AS2_ACLBLIBL_01701:0.170887,((KBS0714_MOLHKGIG_01187:0,TT9_LFPAFLNI_01137:0):0.00622513,SA211_MHAAABBN_00906:0.00433116):0.117167):0.168153);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001175_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001175_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ad35dbb96f8656495a9907a6a50b4181ad1005e8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001175_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01601:0.107019,(AS2_ACLBLIBL_01702:0.0421881,(SA211_MHAAABBN_00905:0.015219,(KBS0714_MOLHKGIG_01186:5e-09,TT9_LFPAFLNI_01136:0.000996967)0.959:0.00810269)1:0.0451305)1:0.107019);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001176_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001176_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..075ff489cb4c2dbd6c4ef90ed9acbfd65c4d838a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001176_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01602:0.255485,(AS2_ACLBLIBL_01703:0.0762637,((KBS0714_MOLHKGIG_01185:0,TT9_LFPAFLNI_01135:0):0.0144075,SA211_MHAAABBN_00904:0.00365852):0.0859033):0.255485);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001177_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001177_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9742c818cffc557d6395605cc2095e481f6c457f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001177_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01603:0.210056,(AS2_ACLBLIBL_01704:0.0304571,(KBS0714_MOLHKGIG_01184:0,SA211_MHAAABBN_00903:0,TT9_LFPAFLNI_01134:0):0.0462703):0.210056);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001180_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001180_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..18a14f10207d6561621154fc0d9723f8f8f78462
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001180_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01607:0.089623,(AS2_ACLBLIBL_01709:0.067093,(SA211_MHAAABBN_00899:0.00214288,(KBS0714_MOLHKGIG_01180:0.0107138,TT9_LFPAFLNI_01130:0.00213792)0.752:0.00212145)0.979:0.0320612)1:0.089623);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001187_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001187_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f93c676285e3649760a779f40e613d84a20a0924
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001187_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01614:0.22398,(AS2_ACLBLIBL_01716:0.124208,(KBS0714_MOLHKGIG_01173:0.0129332,(SA211_MHAAABBN_00892:0.00796163,TT9_LFPAFLNI_01123:0.00526756)0.934:0.0165624)1:0.174246)1:0.22398);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001190_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001190_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a5a4b924551e7aef17bd2b9988366eaa6b39ced9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001190_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01617:0.0929166,(AS2_ACLBLIBL_01719:0.0721365,((KBS0714_MOLHKGIG_01170:0,TT9_LFPAFLNI_01120:0):5e-09,SA211_MHAAABBN_00889:0.00949127):0.056953):0.0929166);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001191_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001191_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..034f80ea976cc13efd7736f9d9fc77dd29746dc4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001191_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01618:0.0503169,(AS2_ACLBLIBL_01720:0.0445933,(KBS0714_MOLHKGIG_01169:0,SA211_MHAAABBN_00888:0,TT9_LFPAFLNI_01119:0):0.0910371):0.0503169);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001193_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001193_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e43ba42dd8f8c27dcedf69d22a66357cd74c1336
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001193_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01620:0.0350722,(AS2_ACLBLIBL_01722:0.113248,((KBS0714_MOLHKGIG_01167:0,SA211_MHAAABBN_00886:0):0.0123223,TT9_LFPAFLNI_01117:5e-09):0.0962436):0.0350722);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001194_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001194_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5e8c6ffc6a77159098e8ff401566cf3ba4bf9bf3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001194_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01621:0.131306,(AS2_ACLBLIBL_01723:0.0552625,(TT9_LFPAFLNI_01116:5e-09,(KBS0714_MOLHKGIG_01166:0.00448684,SA211_MHAAABBN_00885:0.00224665)0.848:0.00678051)0.99:0.0456591)1:0.131306);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001195_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001195_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8f2360f182cc6cbf7743704cc8fd112d00af47f7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001195_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01623:0.153732,(AS2_ACLBLIBL_01726:0.0888931,((KBS0714_MOLHKGIG_01164:0,SA211_MHAAABBN_00883:0):0.00172012,TT9_LFPAFLNI_01114:5e-09):0.107446):0.153732);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001199_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001199_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6b4dd6dba41f141ad81df903ff7fa38e4ddfc7e3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001199_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01628:0.0991183,(AS2_ACLBLIBL_01730:0.0733402,(KBS0714_MOLHKGIG_01159:0.00140055,(SA211_MHAAABBN_00878:0,TT9_LFPAFLNI_01109:0):5e-09):0.0773688):0.0991183);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001200_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001200_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3a22b441a12fd62dbbd8d2bd5fb68d476ae5ed65
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001200_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01629:0.0752314,(AS2_ACLBLIBL_01731:0.0305044,((KBS0714_MOLHKGIG_01158:0,TT9_LFPAFLNI_01108:0):0.00248061,SA211_MHAAABBN_00877:5e-09):0.0455723):0.0752314);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001205_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001205_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1f73fa9ec882820b86b616c407e481fb4e10b3fe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001205_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01635:0.0547733,(AS2_ACLBLIBL_01741:0.260895,(KBS0714_MOLHKGIG_01151:5e-09,(SA211_MHAAABBN_00870:0,TT9_LFPAFLNI_01101:0):0.0035682):0.0739978):0.0547733);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001206_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001206_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3494b496a70de7e214ed5341f9dd63418e9bdf65
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001206_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01636:0.0992287,(AS2_ACLBLIBL_01742:0.0749996,(KBS0714_MOLHKGIG_01150:5e-09,(SA211_MHAAABBN_00869:0,TT9_LFPAFLNI_01100:0):0.0109239):0.0823626):0.0992287);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001207_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001207_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ee8b995b89b688f315bda916ed3040271af0c04f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001207_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01637:0.112327,(AS2_ACLBLIBL_01743:0.0668176,(KBS0714_MOLHKGIG_01149:0.00288514,(SA211_MHAAABBN_00868:0,TT9_LFPAFLNI_01099:0):0.00426835):0.0317081):0.112327);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001208_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001208_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8397fa157975c5023d6f347a99dca09d2b8a6d52
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001208_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01638:0.0272334,(AS2_ACLBLIBL_01744:0.0504207,(KBS0714_MOLHKGIG_01148:0.00673823,(SA211_MHAAABBN_00867:0,TT9_LFPAFLNI_01098:0):0.00891182):0.0357593):0.0272334);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001213_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001213_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..aa64f29dbd9e23a3ba178ef424ef087c1c4f053c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001213_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01645:0.0253497,(AS2_ACLBLIBL_01751:0.00933244,(KBS0714_MOLHKGIG_01141:5e-09,(SA211_MHAAABBN_00860:0,TT9_LFPAFLNI_01091:0):0.0187488):0.00937831):0.0253497);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001215_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001215_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3f8a2cca904a7a381090d6b956f7df254faf104a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001215_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01647:0.101577,(AS2_ACLBLIBL_01753:0.0309811,(TT9_LFPAFLNI_01089:0.0047396,(KBS0714_MOLHKGIG_01139:5e-09,SA211_MHAAABBN_00858:0.00232283)0.792:0.00458879)0.987:0.0413633)1:0.101577);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001216_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001216_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0e73c3441d084b3214ef8d0514facd0512260cf7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001216_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01648:0.0221992,(AS2_ACLBLIBL_01754:0.0146857,(KBS0714_MOLHKGIG_01138:0.00198699,(SA211_MHAAABBN_00857:0.00198688,TT9_LFPAFLNI_01088:5e-09)0.739:5e-09)0.959:0.0158752)1:0.0221992);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001218_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001218_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..503039736e67eca687d34c90b6c49102f3c3ea88
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001218_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01650:0.152019,(AS2_ACLBLIBL_01756:0.0359437,((KBS0714_MOLHKGIG_01136:0,SA211_MHAAABBN_00855:0):5e-09,TT9_LFPAFLNI_01086:0.00970958):0.0497353):0.152019);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001220_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001220_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..142e215806cbf028779b884af9f7fb8bc5d20f10
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001220_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01652:0.318585,(AS2_ACLBLIBL_01758:0.0658361,((KBS0714_MOLHKGIG_01134:0,SA211_MHAAABBN_00853:0):0.00798869,TT9_LFPAFLNI_01084:0.00761949):0.122542):0.318585);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001223_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001223_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3a5353b6dd1a6274a530263e76b8acbf1f68f87a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001223_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01655:0.101552,(AS2_ACLBLIBL_01761:0.0580831,((KBS0714_MOLHKGIG_01131:0,SA211_MHAAABBN_00850:0):0.00257035,TT9_LFPAFLNI_01081:5e-09):0.0473029):0.101552);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001227_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001227_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..44fa3d6202d8ccbeb3221b99d0fe7e5e14916ffd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001227_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01659:0.135562,(AS2_ACLBLIBL_01765:0.0612326,((KBS0714_MOLHKGIG_01127:0,SA211_MHAAABBN_00846:0):5e-09,TT9_LFPAFLNI_01077:0.0117555):0.107961):0.135562);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001229_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001229_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..105d3fa6cf6d59d39a859a47f34c224c277c149e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001229_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01661:0.0740994,(AS2_ACLBLIBL_01767:0.0413679,(TT9_LFPAFLNI_01075:5e-09,(KBS0714_MOLHKGIG_01125:5e-09,SA211_MHAAABBN_00844:0.00475516)0.461:0.00237492)0.986:0.0311433)1:0.0740994);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001230_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001230_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd06adb20a67e9f576a4d5e6bf24ce4d9950bd23
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001230_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01662:0.0636041,(AS2_ACLBLIBL_01769:0.0315996,(SA211_MHAAABBN_00843:0.00585209,(KBS0714_MOLHKGIG_01124:0.00290415,TT9_LFPAFLNI_01074:5e-09)0.805:6e-09)0.987:0.0368873)1:0.0636041);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001231_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001231_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d8d82b754cb423188a1c98ddf26ba5c4a01ffb40
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001231_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01663:0.0158464,(AS2_ACLBLIBL_01770:0.0249162,(KBS0714_MOLHKGIG_01123:0,SA211_MHAAABBN_00842:0,TT9_LFPAFLNI_01073:0):0.0180957):0.0158464);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001232_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001232_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..48ba4d64a904fa8631ce86d87f9d267610f1d2fc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001232_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01664:0.0450683,(AS2_ACLBLIBL_01771:0.0282693,((KBS0714_MOLHKGIG_01122:0,TT9_LFPAFLNI_01072:0):0.00302964,SA211_MHAAABBN_00841:0.00303007):0.0367898):0.0450683);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001233_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001233_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..81d5b64ebc7cdf9598e86a4b6961fdde60dbf5bc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001233_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01665:0.114917,(AS2_ACLBLIBL_01772:0.0381926,(SA211_MHAAABBN_00840:0.00730348,(KBS0714_MOLHKGIG_01121:0.0112675,TT9_LFPAFLNI_01071:5e-09)0.796:0.00679961)0.976:0.0418005)1:0.114917);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001236_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001236_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..832df977f8e6209390e9c648b97f7703d599a2e1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001236_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01670:0.110368,(KBS0714_MOLHKGIG_01116:0.00549204,(AS2_ACLBLIBL_01777:0.026639,(SA211_MHAAABBN_00835:0,TT9_LFPAFLNI_01066:0):0.0175048):0.0075779):0.110368);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001245_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001245_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2339385b9f9c8d445fa57150c39405194dd238f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001245_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01681:0.250985,(AS2_ACLBLIBL_01790:0.0450997,(KBS0714_MOLHKGIG_01104:0.0041412,(SA211_MHAAABBN_00823:0.00245261,TT9_LFPAFLNI_01053:5e-09)0.909:0.0262675)0.978:0.178835)1:0.250985);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001246_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001246_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5eeb0004318a006ed374e4275b900b51abc7038d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001246_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01682:0.0156242,(AS2_ACLBLIBL_01791:0.014363,(KBS0714_MOLHKGIG_01103:0,SA211_MHAAABBN_00822:0,TT9_LFPAFLNI_01052:0):0.00869519):0.0156242);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001247_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001247_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0bbc3db54d2db763f188f64cf6c6b6c0e5d4ee02
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001247_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01684:0.0843598,(AS2_ACLBLIBL_01794:0.040861,(SA211_MHAAABBN_00820:0.00212963,(KBS0714_MOLHKGIG_01101:0.00745537,TT9_LFPAFLNI_01050:0.00640199)0.285:0.00110648)1:0.0499427)1:0.0843598);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001248_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001248_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5a8d5a35fd23b7093b77d906b84a605383344a16
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001248_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01685:0.158023,(AS2_ACLBLIBL_01795:0.0673234,(SA211_MHAAABBN_00819:0.0113371,(KBS0714_MOLHKGIG_01100:0.00557957,TT9_LFPAFLNI_01049:0.0171892)0.804:0.0112109)0.996:0.131534)1:0.158023);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001250_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001250_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..63e01177e6618c7655780e76877ee7b783624876
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001250_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01687:0.0669941,(AS2_ACLBLIBL_01797:0.0852593,(KBS0714_MOLHKGIG_01098:0,SA211_MHAAABBN_00817:0,TT9_LFPAFLNI_01047:0):0.088623):0.0669941);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001255_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001255_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4a650f3e7e45613e1b5e315daf5dbf8e87d8f663
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001255_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01693:0.0874541,(AS2_ACLBLIBL_01804:0.0693001,(KBS0714_MOLHKGIG_01092:0,SA211_MHAAABBN_00811:0,TT9_LFPAFLNI_01041:0):0.0703109):0.0874541);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001256_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001256_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3783df2b7d58cdea56ac9a144f5cf59aacf22e60
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001256_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01694:0.0504082,(AS2_ACLBLIBL_01805:0.0486741,(KBS0714_MOLHKGIG_01091:0.00584876,(SA211_MHAAABBN_00810:0.00388143,TT9_LFPAFLNI_01040:0.00194285)0.767:5e-09)0.998:0.0530957)1:0.0504082);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001258_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001258_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..04e701a3e421ef74c4a305a713afbcbc4007967a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001258_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01696:0.022791,(AS2_ACLBLIBL_01807:0.269231,(KBS0714_MOLHKGIG_01089:0,SA211_MHAAABBN_00808:0,TT9_LFPAFLNI_01038:0):0.060705):0.022791);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001260_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001260_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f69ac50edd48f8b861f6e2490603789021f107b9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001260_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01698:0.138348,(AS2_ACLBLIBL_01810:0.0217329,(KBS0714_MOLHKGIG_01087:0.0104197,(SA211_MHAAABBN_00806:0,TT9_LFPAFLNI_01036:0):0.0147879):0.0395624):0.138348);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001261_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001261_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..200e46e69b92a5a11c9fcb88e42f160adbaa67c6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001261_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01699:0.0465861,(AS2_ACLBLIBL_01811:0.0305003,(KBS0714_MOLHKGIG_01086:0.00388521,(SA211_MHAAABBN_00805:0.00204884,TT9_LFPAFLNI_01035:0.00248124)0.418:0.00547747)0.982:0.0266148)1:0.0465861);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001262_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001262_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..08777224af8804a778d78abe9fa03c70fc76a938
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001262_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01700:0.10423,(AS2_ACLBLIBL_01812:0.0245864,(KBS0714_MOLHKGIG_01085:0.00723258,(SA211_MHAAABBN_00804:0,TT9_LFPAFLNI_01034:0):5e-09):0.0198945):0.10423);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001263_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001263_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a5f4a7e01c120b10b818e3b8a8c569e98bac5539
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001263_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01701:0.194741,(AS2_ACLBLIBL_01813:0.115448,(KBS0714_MOLHKGIG_01084:5e-09,(SA211_MHAAABBN_00803:0,TT9_LFPAFLNI_01033:0):0.00915809):0.0938553):0.194741);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001265_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001265_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..11858140a3a4d7e2848946113c8ab2a4c915e79d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001265_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01703:0.0823206,(AS2_ACLBLIBL_01815:0.0442047,(KBS0714_MOLHKGIG_01082:0.014812,(SA211_MHAAABBN_00801:0,TT9_LFPAFLNI_01031:0):0.00250721):0.032657):0.0823206);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001266_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001266_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..41d1f1e4a67af90b46bb2aebb69e3cf95b3cb1f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001266_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01704:0.110456,(AS2_ACLBLIBL_01816:0.0980443,(KBS0714_MOLHKGIG_01081:0.00783603,(SA211_MHAAABBN_00800:0,TT9_LFPAFLNI_01030:0):5e-09):0.0873013):0.110456);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001267_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001267_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7abe0be295cab87d9c4b8525b0228dcd196c0294
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001267_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01705:0.0599815,(AS2_ACLBLIBL_01818:0.0236237,(KBS0714_MOLHKGIG_01080:0.00736747,(SA211_MHAAABBN_00799:0,TT9_LFPAFLNI_01029:0):0.0039287):0.029153):0.0599815);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001268_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001268_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8033bf521d1720238b65d9045479b9a5a96b6575
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001268_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01706:0.0180148,(AS2_ACLBLIBL_01819:0.0703723,(KBS0714_MOLHKGIG_01079:0,SA211_MHAAABBN_00798:0,TT9_LFPAFLNI_01028:0):0.0519976):0.0180148);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001269_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001269_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3b176c04e3262f2c7aac79a4ba5cd19a2a3ac984
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001269_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01707:0.0528598,(AS2_ACLBLIBL_01820:0.0090827,(KBS0714_MOLHKGIG_01078:0,SA211_MHAAABBN_00797:0,TT9_LFPAFLNI_01027:0):0.00155086):0.0528598);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001275_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001275_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e8a5762a2b00718df4c98e3528eca2a6e73bc310
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001275_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01717:0.166081,(AS2_ACLBLIBL_01827:0.133008,(TT9_LFPAFLNI_01006:0.00620912,(KBS0714_MOLHKGIG_01059:0.0135909,SA211_MHAAABBN_00778:0.0213996)0.539:0.01025)0.989:0.0823387)1:0.166081);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001279_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001279_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3c56f8975db0551a4ada4d391071a30e73f5e88d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001279_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01725:0.0731402,(AS2_ACLBLIBL_01835:0.0563529,(SA211_MHAAABBN_00764:0.0115168,(KBS0714_MOLHKGIG_01051:5e-09,TT9_LFPAFLNI_00992:0.00334823)0.708:0.00587305)0.989:0.0538604)1:0.0731402);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001280_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001280_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3cd1fb1a75b322d360bd806d143aa61e5b0257ad
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001280_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01726:0.0680974,(AS2_ACLBLIBL_01836:0.0560898,((KBS0714_MOLHKGIG_01050:0,SA211_MHAAABBN_00763:0):6e-09,TT9_LFPAFLNI_00991:0.00673945):0.0572932):0.0680974);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001282_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001282_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c840565d9cea11722ad926009e0a281396a0e368
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001282_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01728:0.131277,(AS2_ACLBLIBL_01840:0.0511484,(KBS0714_MOLHKGIG_01048:0.0181652,(SA211_MHAAABBN_00761:0.00494352,TT9_LFPAFLNI_00989:0.00992388)0.725:0.00758737)0.991:0.0886825)1:0.131277);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001283_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001283_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..27873fa380369e3ebde2c248a181b747db5779f7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001283_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01729:0.17292,(AS2_ACLBLIBL_01841:0.103588,(TT9_LFPAFLNI_00988:0.00793049,(KBS0714_MOLHKGIG_01047:0.00432132,SA211_MHAAABBN_00760:5e-09)0.784:0.00946504)0.966:0.079978)1:0.17292);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001284_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001284_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd0e880bcad6ccbef5fd52983be289742db2a465
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001284_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01730:0.0242603,(AS2_ACLBLIBL_01842:0.0590105,(SA211_MHAAABBN_00759:5e-09,(KBS0714_MOLHKGIG_01046:0.00150275,TT9_LFPAFLNI_00987:0.00150448)0.803:0.00150795)1:0.060983)1:0.0242603);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001285_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001285_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e20f95f9bb93d5bd2944a8a6bfeb37394561f548
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001285_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01731:0.0646779,(AS2_ACLBLIBL_01844:0.0717246,(TT9_LFPAFLNI_00986:0.00144676,(SA211_MHAAABBN_00758:0.00977903,KBS0714_MOLHKGIG_01045:0.00395306)0.448:0.00266723)1:0.042894)1:0.0646779);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001288_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001288_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4d719f837dce2f744ae191be4a1f981aca19018a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001288_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01737:0.0153248,(AS2_ACLBLIBL_01847:0.0222963,(TT9_LFPAFLNI_00979:5e-09,(KBS0714_MOLHKGIG_01037:5e-09,SA211_MHAAABBN_00750:0.00275757)0.974:0.0110959)0.406:0.00320314)1:0.0153248);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001289_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001289_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3c21052b0dacd88ce02b1db85437bc9e19b71d71
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001289_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01738:2.5e-09,(TT9_LFPAFLNI_00978:0.00460202,(AS2_ACLBLIBL_01848:0.0185442,(KBS0714_MOLHKGIG_01036:0.00916974,SA211_MHAAABBN_00749:5e-09)0.851:0.00458686)0.673:5e-09)1:2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001291_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001291_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e3de3e13ad27be85ee1450cb00dd67971161a385
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001291_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01740:0.00797024,(AS2_ACLBLIBL_01850:0.0205349,(SA211_MHAAABBN_00747:0.0178173,(KBS0714_MOLHKGIG_01032:0.00387302,TT9_LFPAFLNI_00976:5e-09)0.965:0.022393)0.491:0.0109131)1:0.00797024);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001293_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001293_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2041e699c08fa2705fb85569dcb8c0ad7f0f2404
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001293_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01745:0.0347281,(AS2_ACLBLIBL_01858:0.0324493,(TT9_LFPAFLNI_00971:5e-09,(KBS0714_MOLHKGIG_01027:0.00302533,SA211_MHAAABBN_00742:0.00302561)0.807:0.00303039)0.978:0.0360114)1:0.0347281);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001295_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001295_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7108c47eede2a4711d188816c162219aeea9703f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001295_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01750:0.123961,(AS2_ACLBLIBL_01860:0.0246271,(KBS0714_MOLHKGIG_01025:0.00653187,(SA211_MHAAABBN_00740:0,TT9_LFPAFLNI_00969:0):5e-09):0.0533441):0.123961);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001297_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001297_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6a4c038a4289a00c5af398e47ad076ac4425a666
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001297_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01758:0.0904837,(AS2_ACLBLIBL_01865:0.102349,(SA211_MHAAABBN_00738:5e-09,(KBS0714_MOLHKGIG_01023:5e-09,TT9_LFPAFLNI_00967:0.0104112)0.918:0.0104698)0.988:0.160972)1:0.0904837);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001298_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001298_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0d00a4f8744265fca6458a35ef725ae882df4515
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001298_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01762:0.427105,(AS2_ACLBLIBL_01866:0.126426,(KBS0714_MOLHKGIG_01021:5e-09,(TT9_LFPAFLNI_00965:0.0215704,SA211_MHAAABBN_00735:0.0107408)0.757:0.00264404)0.988:0.188765)1:0.427105);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001305_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001305_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a6489e0b99a3ae194d030bee543462e911128c04
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001305_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01810:0.0658224,(AS2_ACLBLIBL_01883:0.0303461,((KBS0714_MOLHKGIG_01007:0,SA211_MHAAABBN_00721:0):0.0139015,TT9_LFPAFLNI_00950:5e-09):0.0303749):0.0658224);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001306_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001306_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..205140943987f8690dcef7d8ecf32cfe48d2dfdc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001306_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01812:0.105109,(AS2_ACLBLIBL_01884:0.0486267,((KBS0714_MOLHKGIG_01006:0,SA211_MHAAABBN_00720:0):5e-09,TT9_LFPAFLNI_00949:0.0184331):0.0201198):0.105109);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001307_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001307_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d00a157a00aecec1464659df3a8a48ff78a64d39
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001307_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01813:0.10996,(AS2_ACLBLIBL_01885:0.0392277,((KBS0714_MOLHKGIG_01005:0,SA211_MHAAABBN_00719:0):5e-09,TT9_LFPAFLNI_00948:0.0131578):0.1222):0.10996);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001308_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001308_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3818eabf3707554847ed47a6ac1bdd6cb1e365ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001308_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01814:0.117219,(AS2_ACLBLIBL_01886:0.0769215,(TT9_LFPAFLNI_00947:5e-09,(KBS0714_MOLHKGIG_01004:5e-09,SA211_MHAAABBN_00718:0.00212428)0.941:0.0107032)0.976:0.0414987)1:0.117219);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001309_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001309_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..06595a21b8fe45ef0275d433d3868d2b3b0e42e4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001309_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01815:0.0985913,(AS2_ACLBLIBL_01887:0.0554346,(KBS0714_MOLHKGIG_01003:5e-09,(SA211_MHAAABBN_00717:0.00235703,TT9_LFPAFLNI_00946:0.0119599)0.671:0.00714831)0.999:0.0749728)1:0.0985913);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001310_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001310_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..19a879207b4539e95d126c84585723f053d82a85
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001310_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01816:0.0588356,(AS2_ACLBLIBL_01888:0.0242371,(KBS0714_MOLHKGIG_01002:0,SA211_MHAAABBN_00716:0,TT9_LFPAFLNI_00945:0):0.0521654):0.0588356);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001311_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001311_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6592c873527f9ea514811fbec263a415b6599945
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001311_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01889:0,KBS0714_MOLHKGIG_01001:0,SA211_MHAAABBN_00715:0,TT9_LFPAFLNI_00944:0):0.0486071,KD337_NAFOICDF_01817:0.0486071);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001313_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001313_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d2401271c1dbe870af773ad63350b1cf9e815bd3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001313_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01819:0.136971,(AS2_ACLBLIBL_01891:0.208708,((KBS0714_MOLHKGIG_00999:0,SA211_MHAAABBN_00713:0):0.005254,TT9_LFPAFLNI_00942:0.0110194):0.120882):0.136971);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001314_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001314_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5e094015aa33f5d168fd64783e390a6b778941ec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001314_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01838:0.103446,(AS2_ACLBLIBL_01892:0.0976167,((KBS0714_MOLHKGIG_00998:0,SA211_MHAAABBN_00712:0):0.0276576,TT9_LFPAFLNI_00941:5e-09):0.135041):0.103446);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001315_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001315_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5f6330884061869e4d65e7ecea4fc11d82c9612c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001315_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01839:0.113356,(AS2_ACLBLIBL_01893:0.0700991,(KBS0714_MOLHKGIG_00997:0,SA211_MHAAABBN_00711:0,TT9_LFPAFLNI_00940:0):0.0277766):0.113356);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001316_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001316_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cb8fbff74d43720bbef796acd957748ddca8414e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001316_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01841:0.070395,(AS2_ACLBLIBL_01894:0.104878,(TT9_LFPAFLNI_00938:0.00376866,(KBS0714_MOLHKGIG_00995:0.00373997,SA211_MHAAABBN_00709:5e-09)0.764:0.00183505)0.991:0.0401954)1:0.070395);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001317_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001317_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5eca54685a533c6812d1b7b20e99cf1dc8f6b666
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001317_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01842:0.0559705,(AS2_ACLBLIBL_01895:0.0185443,(KBS0714_MOLHKGIG_00994:0.00366295,(SA211_MHAAABBN_00708:0.00248994,TT9_LFPAFLNI_00937:0.00368925)0.304:0.00180773)0.99:0.0147291)1:0.0559705);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001319_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001319_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9c499430333adc29f0add9071d8ddb208040c1d2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001319_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01846:0.00333269,(AS2_ACLBLIBL_01899:0.0270986,(KBS0714_MOLHKGIG_00990:0.00385659,(SA211_MHAAABBN_00704:0.00388371,TT9_LFPAFLNI_00933:0.00278586)0.905:0.0134747)0.977:0.0199242)1:0.00333269);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001321_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001321_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..858726e376b263b5eed428f44b296c54e72d1c22
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001321_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01848:0.00109552,(AS2_ACLBLIBL_01901:0.00662096,((KBS0714_MOLHKGIG_00988:0,TT9_LFPAFLNI_00931:0):5e-09,SA211_MHAAABBN_00702:0.00438584):0.00438898):0.00109552);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001329_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001329_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c3adc977d0c04e89558a5e9a111e945b9659ed66
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001329_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01857:0.0409537,(AS2_ACLBLIBL_01910:0.126633,(KBS0714_MOLHKGIG_00980:0,SA211_MHAAABBN_00694:0,TT9_LFPAFLNI_00923:0):0.347084):0.0409537);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001330_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001330_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..48d283e2bf42bf00cf7ad13708c869de56c94321
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001330_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01858:0.0239599,(AS2_ACLBLIBL_01911:0.0187091,(KBS0714_MOLHKGIG_00979:0,SA211_MHAAABBN_00693:0,TT9_LFPAFLNI_00922:0):0.0338388):0.0239599);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001331_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001331_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..891d2982b2fb4e79adf1d35b323853fb0b3eeae7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001331_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01859:0.0330402,(AS2_ACLBLIBL_01912:0.0129385,(KBS0714_MOLHKGIG_00978:0.0044365,(SA211_MHAAABBN_00692:0,TT9_LFPAFLNI_00921:0):5e-09):0.0233025):0.0330402);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001332_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001332_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4e990c74655b30980dcde2f3ab91614bb4c8b808
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001332_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01860:0.0495534,(AS2_ACLBLIBL_01913:0.00542216,(KBS0714_MOLHKGIG_00977:5e-09,(SA211_MHAAABBN_00691:0,TT9_LFPAFLNI_00920:0):0.00477261):0.00415892):0.0495534);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001335_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001335_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..540a76c8fd378af5e4a1edc0998e273ba70a4c45
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001335_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01866:0.123357,(AS2_ACLBLIBL_01918:0.121248,(KBS0714_MOLHKGIG_00972:0.0134079,(SA211_MHAAABBN_00685:0.0202578,TT9_LFPAFLNI_00915:0.00319594)0.282:0.00678931)0.994:0.106701)1:0.123357);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001336_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001336_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e486a98a6c9338f1d73b1e760cdaa637c9e0a1f9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001336_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01868:0.0889186,(AS2_ACLBLIBL_01920:0.0437435,(SA211_MHAAABBN_00680:0.00207806,(KBS0714_MOLHKGIG_00967:0.0157121,TT9_LFPAFLNI_00913:0.00319468)0.523:0.00694742)0.999:0.0519917)1:0.0889186);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001340_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001340_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..17aacc4258e66e06d94f50b606940966b4266f54
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001340_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01877:0.135599,(AS2_ACLBLIBL_01926:0.167845,(SA211_MHAAABBN_00675:0.00719246,(KBS0714_MOLHKGIG_00962:0.00455488,TT9_LFPAFLNI_00908:0.00661736)0.857:0.0305444)0.993:0.183366)1:0.135599);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001342_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001342_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..487219895338cd9c2c4117ca0a94d4f56bd6d0de
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001342_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01880:0.109023,(AS2_ACLBLIBL_01929:0.0582428,(SA211_MHAAABBN_00672:0.00273715,(KBS0714_MOLHKGIG_00959:0.00210589,TT9_LFPAFLNI_00905:0.0147174)0.767:0.00359585)0.999:0.0713538)1:0.109023);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001344_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001344_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ed446699bf609739bd3366d7a9b35b679ec7bcb0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001344_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01883:0.0427296,(SA211_MHAAABBN_00669:0.00424187,(KBS0714_MOLHKGIG_00956:5e-09,(AS2_ACLBLIBL_01931:0.12227,TT9_LFPAFLNI_00902:5e-09)0.877:0.00945279)0.788:0.00530097)1:0.0427296);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001345_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001345_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c25dafd0d8272deb4c0ec16c111025b70e16b3bb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001345_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01891:0.0157338,(AS2_ACLBLIBL_01990:0.111967,(KBS0714_MOLHKGIG_00947:0.0101046,(SA211_MHAAABBN_00666:5e-09,TT9_LFPAFLNI_00895:0.0100943)0.232:6e-09)0.742:0.00951251)1:0.0157338);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001346_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001346_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8809077c88abdc9d11685baadebba5e5756d05f2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001346_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02191:0.0121827,((KBS0714_MOLHKGIG_00637:0,TT9_LFPAFLNI_00594:0):0.0155661,(AS2_ACLBLIBL_01994:0.0340228,TT9_LFPAFLNI_00894:0.098747):0.172369):0.0121827);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001349_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001349_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c6f35a1d4548f368e419db12b9b92b17842cbbfc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001349_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01895:0.274093,(AS2_ACLBLIBL_01997:0.166615,((KBS0714_MOLHKGIG_00941:0,TT9_LFPAFLNI_00890:0):0.0214864,SA211_MHAAABBN_00660:0.0178636):0.0580917):0.274093);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001350_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001350_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4ab82b919064da43908a235af4753373e7d32dec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001350_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01896:0.105603,(AS2_ACLBLIBL_01999:0.117891,(SA211_MHAAABBN_00659:0.0207319,(KBS0714_MOLHKGIG_00940:0.0112844,TT9_LFPAFLNI_00889:0.0188952)0.774:0.00734739)0.997:0.103734)1:0.105603);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001351_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001351_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7d0c048692c23d4505d3beb9e8c7331705a596cb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001351_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01897:0.162325,(SA211_MHAAABBN_00658:0.0121654,(TT9_LFPAFLNI_00888:0.012026,(AS2_ACLBLIBL_02000:0.16765,KBS0714_MOLHKGIG_00939:5e-09)0.586:0.00599058)0.823:0.00914887)1:0.162325);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001352_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001352_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..22141258a168ea207f9d5d72c95b473ae9f8e5f9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001352_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01898:0.333099,(AS2_ACLBLIBL_02001:0.0429599,(SA211_MHAAABBN_00657:0.00795131,(KBS0714_MOLHKGIG_00938:0.0202499,TT9_LFPAFLNI_00887:0.00382307)0.935:0.0163019)0.975:0.090828)1:0.333099);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001353_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001353_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..acca90f2bd7fc4063f1c52c4d471e02d70aae3d7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001353_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01899:0.263204,(KBS0714_MOLHKGIG_00937:0.0109527,(SA211_MHAAABBN_00656:0.0156981,(AS2_ACLBLIBL_02002:0.0157551,TT9_LFPAFLNI_00886:0.00941453)0.846:0.00620652)0.732:0.00495404)1:0.263204);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001357_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001357_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b60f83283f8abbc726eb6a0bdda876847e3f4bc9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001357_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01903:0.0594487,(AS2_ACLBLIBL_02007:0.0152645,(TT9_LFPAFLNI_00882:0.00924167,(KBS0714_MOLHKGIG_00933:0.0018981,SA211_MHAAABBN_00652:0.00571045)0.732:0.00219967)0.981:0.0204395)1:0.0594487);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001360_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001360_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e153f5dddf560a1416cf5d2d334a54b798db8fe4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001360_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01908:0.23576,(AS2_ACLBLIBL_02010:0.191531,(KBS0714_MOLHKGIG_00930:5e-09,(TT9_LFPAFLNI_00878:0.0515658,SA211_MHAAABBN_00649:0.00771137)0.411:0.0125401)0.922:0.12202)1:0.23576);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001363_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001363_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..98420415ae0e8f482987546d174b11c0582e9fed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001363_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01914:0.285004,(AS2_ACLBLIBL_02015:0.0982253,((KBS0714_MOLHKGIG_00926:0,TT9_LFPAFLNI_00874:0):0.00577749,SA211_MHAAABBN_00645:0.0186164):0.166308):0.285004);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001364_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001364_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f708b8f85ad4b1786b3645506560a90370930756
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001364_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01915:0.123673,(AS2_ACLBLIBL_02016:0.0751506,((KBS0714_MOLHKGIG_00925:0,TT9_LFPAFLNI_00873:0):5e-09,SA211_MHAAABBN_00644:0.00692485):0.0523817):0.123673);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001365_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001365_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bac7fd8423b931187cc8212457c0be12b50e19eb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001365_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01916:0.00957233,(AS2_ACLBLIBL_02017:0.0792766,(KBS0714_MOLHKGIG_00924:0.00319876,(SA211_MHAAABBN_00643:0.00109559,TT9_LFPAFLNI_00872:5e-09)0.774:0.00119166)0.802:0.006222)1:0.00957233);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001367_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001367_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..26fb392cfc927ab869c6ecb2ad924f412a300299
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001367_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01918:0.0923208,(AS2_ACLBLIBL_02019:0.0291391,(KBS0714_MOLHKGIG_00922:0.00930127,(SA211_MHAAABBN_00641:0.00311178,TT9_LFPAFLNI_00870:5e-09)0.57:5.9844e-05)0.998:0.0643682)1:0.0923208);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001368_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001368_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..56e6f02c72da562a7b8946b6a155255d1e4ee4ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001368_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01919:0.0590743,(AS2_ACLBLIBL_02020:0.0928257,(SA211_MHAAABBN_00640:5e-09,(KBS0714_MOLHKGIG_00921:5e-09,TT9_LFPAFLNI_00869:0.00272796)0.83:0.00272469)0.925:0.0195762)1:0.0590743);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001370_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001370_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3a31377ade85323cf361116372cc7fa51395a7cf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001370_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01921:0.0651403,(AS2_ACLBLIBL_02022:0.0246313,(SA211_MHAAABBN_00638:0.00474189,(KBS0714_MOLHKGIG_00919:5e-09,TT9_LFPAFLNI_00867:0.00234606)0.741:0.00230937)0.992:0.0375129)1:0.0651403);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001372_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001372_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c4757b550fa0b451c4b25387e01ec979653a00e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001372_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01923:0.187213,(AS2_ACLBLIBL_02024:0.104277,(SA211_MHAAABBN_00636:0.00117953,(KBS0714_MOLHKGIG_00917:0.0230226,TT9_LFPAFLNI_00865:0.0181693)0.893:0.0185452)0.992:0.10841)1:0.187213);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001373_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001373_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..448788e25fe63c528b73b48c4fcacdb85eb619e0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001373_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01924:0.149268,(AS2_ACLBLIBL_02026:0.162715,(KBS0714_MOLHKGIG_00916:0.00353306,(SA211_MHAAABBN_00635:0.0138137,TT9_LFPAFLNI_00864:0.00560736)0.703:0.0101574)0.998:0.101176)1:0.149268);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001374_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001374_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0cd0cfa7f6ff69cd9422a89f4a72da8ba205cb47
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001374_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01925:0.13014,(AS2_ACLBLIBL_02027:0.0791113,((KBS0714_MOLHKGIG_00915:0,TT9_LFPAFLNI_00863:0):0.00818962,SA211_MHAAABBN_00634:0.00495282):0.0735626):0.13014);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001377_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001377_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..85a5cc21fef3424ea484452f6dd4e385b2986baa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001377_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01928:0.17064,(AS2_ACLBLIBL_02030:0.0938471,(KBS0714_MOLHKGIG_00912:0,SA211_MHAAABBN_00631:0,TT9_LFPAFLNI_00860:0):0.0787326):0.17064);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001378_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001378_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d979cbb5bbb8b07cb53224dcf674c3514716f394
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001378_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01929:0.301152,(AS2_ACLBLIBL_02031:0.132245,(KBS0714_MOLHKGIG_00911:0,SA211_MHAAABBN_00630:0,TT9_LFPAFLNI_00859:0):0.0668401):0.301152);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001379_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001379_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1301cae873fb0a40ff5a4448652beb8bb6bca7bf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001379_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01930:0.181312,(AS2_ACLBLIBL_02032:0.177847,(KBS0714_MOLHKGIG_00910:5e-09,(SA211_MHAAABBN_00629:0.00840427,TT9_LFPAFLNI_00858:0.00823546)0.93:0.0124189)0.94:0.0846871)1:0.181312);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001380_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001380_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3a096902a928a83b15b63a8c89fcb315e5e2f87a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001380_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01931:0.0351151,(KBS0714_MOLHKGIG_00909:5e-09,(SA211_MHAAABBN_00628:0.00840375,(AS2_ACLBLIBL_02033:0.0621507,TT9_LFPAFLNI_00857:0.00838903)0.619:5e-09)0.239:0.00836178)1:0.0351151);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001381_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001381_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..dc35b4408b26025a65a7edc10c6a09591d8af711
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001381_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01932:0.0915511,(AS2_ACLBLIBL_02034:0.0462906,((KBS0714_MOLHKGIG_00908:0,TT9_LFPAFLNI_00856:0):5e-09,SA211_MHAAABBN_00627:0.00414786):0.0295157):0.0915511);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001382_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001382_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2f4f887ca67e12c73f643c997aa53f60e855dfac
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001382_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01933:0.157991,(AS2_ACLBLIBL_02035:0.0425513,(KBS0714_MOLHKGIG_00907:0.00456957,(SA211_MHAAABBN_00626:0.0101986,TT9_LFPAFLNI_00855:0.00510614)0.91:0.0160357)0.959:0.0719424)1:0.157991);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001383_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001383_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..146fcf1fec34478adf7266764f30d215d261f056
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001383_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01934:0.0452379,(AS2_ACLBLIBL_02036:5e-09,(KBS0714_MOLHKGIG_00906:0,SA211_MHAAABBN_00625:0,TT9_LFPAFLNI_00854:0):0.0122899):0.0452379);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001387_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001387_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a5666b7125fdf0caa8bd08552ba32786cc2ec331
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001387_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01938:0.0849567,((SA211_MHAAABBN_00621:0.0045226,TT9_LFPAFLNI_00850:0.0029682)0.994:0.0554843,(AS2_ACLBLIBL_02040:0.0330829,KBS0714_MOLHKGIG_00902:0.0121232)0.979:0.0361966)1:0.0849567);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001388_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001388_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9cb9a67d5decbb0616bfc1cb3a0c20aa864da0d7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001388_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01939:0.0392098,(KBS0714_MOLHKGIG_00900:0.109689,(SA211_MHAAABBN_00620:0.0838361,(TT9_LFPAFLNI_00849:0.0695008,AS2_ACLBLIBL_02041:0.0389003)0.396:0.0243197)1:0.131477)1:0.0392098);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001389_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001389_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0406839437e5ca31b2e50267f9843d0f9e4da60d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001389_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01940:0.294981,(TT9_LFPAFLNI_00846:0.811427,(AS2_ACLBLIBL_02042:0.267656,(KBS0714_MOLHKGIG_00895:0.0132619,SA211_MHAAABBN_00617:5e-09)0.967:0.157648)0.973:0.310236)1:0.294981);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001391_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001391_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6763de7c983673bf47cda3bf61a7e0c571b44a65
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001391_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01942:0.158862,(SA211_MHAAABBN_00619:0.0146703,(AS2_ACLBLIBL_02044:0.00566796,(KBS0714_MOLHKGIG_00897:0.00352055,TT9_LFPAFLNI_00848:0.0046488)0.394:0.00584484)0.381:0.00971794)1:0.158862);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001392_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001392_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..142574c859dafcc43d5397ccdad6cd588fa1404e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001392_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01945:0.0494756,((KBS0714_MOLHKGIG_00885:5e-09,SA211_MHAAABBN_00607:0.00232561)1:0.116678,(AS2_ACLBLIBL_02051:0.00368183,TT9_LFPAFLNI_00843:0.00808331)1:0.110736)1:0.0494756);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001394_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001394_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ab927cad71188dd0a0c6c0c9716798d0efd687b6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001394_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01948:0.281781,(AS2_ACLBLIBL_02054:0.11747,(SA211_MHAAABBN_00603:0.0028365,(KBS0714_MOLHKGIG_00881:0.0187567,TT9_LFPAFLNI_00840:0.0132413)0.773:0.00523308)0.997:0.137558)1:0.281781);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001398_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001398_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7a530e4ff753c14e7f76ae6eb5a1204f95f8ef50
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001398_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01952:0.122047,(AS2_ACLBLIBL_02058:0.0252524,((KBS0714_MOLHKGIG_00877:0,SA211_MHAAABBN_00599:0):5e-09,TT9_LFPAFLNI_00836:0.00536534):0.0409161):0.122047);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001402_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001402_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..95041cbc236f6d147440b5c84ef55606461749d9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001402_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01956:0.117814,(AS2_ACLBLIBL_02062:0.0338997,(SA211_MHAAABBN_00595:0.0105679,(KBS0714_MOLHKGIG_00873:0.00533771,TT9_LFPAFLNI_00832:0.0106869)0.764:0.00558214)0.988:0.0742855)1:0.117814);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001403_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001403_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..006a966e57d344364b09062a3ce692a6d3473595
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001403_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01957:0.0821337,(AS2_ACLBLIBL_02063:0.0509945,(SA211_MHAAABBN_00594:0.00548712,(KBS0714_MOLHKGIG_00872:0.00701758,TT9_LFPAFLNI_00831:0.00652096)0.802:0.00425893)0.97:0.0253488)1:0.0821337);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001405_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001405_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7a59bac5d8041f8b2e0dab8bf5abca6c98ffb8a5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001405_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01959:0.23233,(SA211_MHAAABBN_00592:0.00258928,(AS2_ACLBLIBL_02065:0.0115416,(KBS0714_MOLHKGIG_00870:0.00257981,TT9_LFPAFLNI_00829:0.00258821)0.873:0.00513519)0.805:0.00525609)1:0.23233);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001406_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001406_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..df9883c8e19788bd1be2e478bbf0785a4b45d37a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001406_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01960:0.159874,(AS2_ACLBLIBL_02066:0.081438,(TT9_LFPAFLNI_00828:5e-09,(KBS0714_MOLHKGIG_00869:0.00605052,SA211_MHAAABBN_00591:5e-09)0.914:0.0120247)0.847:0.0325075)1:0.159874);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001407_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001407_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..62f25074f9d9a72acf6749adb34b425e18da1c30
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001407_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01961:0.0856614,(AS2_ACLBLIBL_02067:0.050298,(TT9_LFPAFLNI_00827:0.00626995,(KBS0714_MOLHKGIG_00868:5e-09,SA211_MHAAABBN_00590:0.0053449)0.775:0.00450078)0.979:0.0506588)1:0.0856614);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001408_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001408_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e5baef480abbf5eab8ba08a59910d1f52437aa27
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001408_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01962:0.0913401,(AS2_ACLBLIBL_02068:0.0432179,(TT9_LFPAFLNI_00826:0.00271026,(SA211_MHAAABBN_00589:0.00542184,KBS0714_MOLHKGIG_00867:0.00544549)0.438:5e-09)0.986:0.0404973)1:0.0913401);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001409_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001409_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..047f720103a21e29c6d1dec6867edf380303521a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001409_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01963:0.122358,(AS2_ACLBLIBL_02069:0.0726484,(SA211_MHAAABBN_00588:5e-09,(KBS0714_MOLHKGIG_00866:0.0197941,TT9_LFPAFLNI_00825:0.00773485)0.76:0.00417379)1:0.135808)1:0.122358);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001411_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001411_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..487bf44539f22a25940385d938bf2828d7272c78
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001411_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01965:0.08445,(AS2_ACLBLIBL_02071:0.0095082,((KBS0714_MOLHKGIG_00864:0,TT9_LFPAFLNI_00823:0):0.00494257,SA211_MHAAABBN_00586:0.00492276):0.031125):0.08445);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001413_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001413_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..30075ffeceba02638a2001748047c10bba923718
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001413_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01967:0.0520739,(AS2_ACLBLIBL_02073:0.0254641,((KBS0714_MOLHKGIG_00862:0,SA211_MHAAABBN_00584:0):0.00375807,TT9_LFPAFLNI_00821:5e-09):0.0171777):0.0520739);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001414_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001414_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d897c768c426b89c9b9816a5920dd004a2f30506
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001414_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01968:0.0609087,(AS2_ACLBLIBL_02074:0.0875106,(TT9_LFPAFLNI_00820:0.0026974,(KBS0714_MOLHKGIG_00861:0.00200716,SA211_MHAAABBN_00583:5e-09)0.9:0.00736914)0.984:0.040465)1:0.0609087);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001417_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001417_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cbca55d93d93a704c853c57b35a41125f40b09b3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001417_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01976:0.0498516,(AS2_ACLBLIBL_02081:0.0395183,(KBS0714_MOLHKGIG_00853:0.00411016,(SA211_MHAAABBN_00575:0,TT9_LFPAFLNI_00812:0):0.0113096):0.0360499):0.0498516);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001418_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001418_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bb20cf5657248ed05fc64e93e0f41c8521b8d39f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001418_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01977:0.0293192,(AS2_ACLBLIBL_02082:0.0285782,(KBS0714_MOLHKGIG_00852:0.00567442,(SA211_MHAAABBN_00574:0,TT9_LFPAFLNI_00811:0):0.0132664):0.0226268):0.0293192);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001420_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001420_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8cd55d1e2678784dc15f7097a8eeefc2e2c11e28
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001420_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01985:0.0759583,(AS2_ACLBLIBL_02085:0.0283632,(KBS0714_MOLHKGIG_00850:0.0045159,(SA211_MHAAABBN_00572:0,TT9_LFPAFLNI_00809:0):0.0451704):0.0400941):0.0759583);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001421_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001421_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b2f8db25e969fad21b36d2311ce57ec83070e8e5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001421_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01986:0.0164895,(AS2_ACLBLIBL_02086:0.0695582,(KBS0714_MOLHKGIG_00849:0.00704011,(SA211_MHAAABBN_00571:0,TT9_LFPAFLNI_00808:0):0.00414726):0.0139801):0.0164895);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001422_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001422_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..992be1c1046bfc55602997f8569c533cab997ffc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001422_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01987:0.0741312,(AS2_ACLBLIBL_02087:0.0210291,(KBS0714_MOLHKGIG_00848:0.00330922,(SA211_MHAAABBN_00570:0,TT9_LFPAFLNI_00807:0):0.0021278):0.0625409):0.0741312);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001423_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001423_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..20401980e43f742e70099f7f637d68031c17da40
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001423_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01988:0.0815156,(AS2_ACLBLIBL_02088:0.0378663,((KBS0714_MOLHKGIG_00847:0,TT9_LFPAFLNI_00806:0):5e-09,SA211_MHAAABBN_00569:0.00185026):0.0589218):0.0815156);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001426_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001426_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6cbf2c5b7a1ce312a801f432e4dbb27dd01adcb2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001426_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01991:0.0421822,((AS2_ACLBLIBL_02092:0,KBS0714_MOLHKGIG_00832:0,SA211_MHAAABBN_00564:0):5e-09,TT9_LFPAFLNI_00802:0.00568246):0.0421822);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001427_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001427_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1603ae6ff0c250d7fb8fb0418664688821996af8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001427_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01992:0.0663216,(AS2_ACLBLIBL_02093:0.0228326,(TT9_LFPAFLNI_00801:5e-09,(KBS0714_MOLHKGIG_00831:0.00776555,SA211_MHAAABBN_00563:0.00465525)0.613:0.00153297)0.907:0.0110035)1:0.0663216);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001428_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001428_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a535deb9e16c1ae01a9a428ccbc5b16566b97e54
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001428_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01993:0.0149645,(AS2_ACLBLIBL_02094:0.0773263,((KBS0714_MOLHKGIG_00828:0,SA211_MHAAABBN_00560:0):0.00251462,TT9_LFPAFLNI_00797:0.00427882):0.0295592):0.0149645);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001430_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001430_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8d6d44556166c1201be906290433903f1d1990f9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001430_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01996:0.0478163,(AS2_ACLBLIBL_02097:0.0274323,((KBS0714_MOLHKGIG_00825:0,SA211_MHAAABBN_00557:0):5e-09,TT9_LFPAFLNI_00794:0.00611883):0.0559516):0.0478163);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001436_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001436_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..02da20c11b250549d14292570a0c98da1e31e846
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001436_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02003:0.142055,(AS2_ACLBLIBL_02112:0.168728,(SA211_MHAAABBN_00550:5e-09,(TT9_LFPAFLNI_00787:0.0157986,KBS0714_MOLHKGIG_00818:5e-09)0.81:0.00517328)1:0.197159)1:0.142055);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001438_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001438_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5dda3ca124018c5b63b7f377c93cc10dcdfd9a2a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001438_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02005:0.0837692,(AS2_ACLBLIBL_02114:0.0962612,(KBS0714_MOLHKGIG_00816:0.00543887,(SA211_MHAAABBN_00548:5e-09,TT9_LFPAFLNI_00785:0.00430898)0.632:0.00319278)0.697:0.0247343)1:0.0837692);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001440_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001440_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..afc61f3ad703466eec2fd86d44c6de282794609a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001440_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02007:0.0897134,(AS2_ACLBLIBL_02116:0.0554566,(KBS0714_MOLHKGIG_00814:5e-09,(SA211_MHAAABBN_00546:6e-09,TT9_LFPAFLNI_00783:0.00381138)0.527:0.00762579)0.999:0.101155)1:0.0897134);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001442_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001442_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..042ed070146ff2a25ff1f31acfc303a7bea3d9dc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001442_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02009:0.199228,(AS2_ACLBLIBL_02118:0.110908,(KBS0714_MOLHKGIG_00812:5e-09,(SA211_MHAAABBN_00544:0.00386407,TT9_LFPAFLNI_00781:6e-09)0.887:0.00775722)0.966:0.0893514)1:0.199228);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001443_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001443_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..62695df898445e4b3343e57420a6aa9fe0ab999c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001443_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02010:0.0900931,(AS2_ACLBLIBL_02119:0.0822339,(KBS0714_MOLHKGIG_00811:0,SA211_MHAAABBN_00543:0,TT9_LFPAFLNI_00780:0):0.0521187):0.0900931);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001445_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001445_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d941a72f51102065565aac2fc7132f081aeccd6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001445_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02012:0.188611,(AS2_ACLBLIBL_02121:0.0273918,(KBS0714_MOLHKGIG_00809:0.00421882,(SA211_MHAAABBN_00541:0,TT9_LFPAFLNI_00778:0):0.00429731):5e-09):0.188611);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001449_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001449_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..81f803f8cf264de5a5b0b83a5e2ba0198ddc1395
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001449_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02019:0.0396974,(AS2_ACLBLIBL_02126:0.0498427,(KBS0714_MOLHKGIG_00804:0.0180911,(SA211_MHAAABBN_00535:0.00721331,TT9_LFPAFLNI_00771:0.0108384)0.716:6e-09)0.993:0.0621029)1:0.0396974);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001450_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001450_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a2955bddde01987a2c2d292a4a0005715896bcc2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001450_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02020:0.131326,(AS2_ACLBLIBL_02127:0.075681,(KBS0714_MOLHKGIG_00803:0.0123051,(SA211_MHAAABBN_00534:0.00616163,TT9_LFPAFLNI_00770:0.00294733)0.745:0.00300109)0.964:0.0476661)1:0.131326);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001451_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001451_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..38af95754643482936e4b9b933fa3169f4c279af
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001451_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02021:0.184933,(AS2_ACLBLIBL_02128:0.0994484,(KBS0714_MOLHKGIG_00802:0.0225344,(SA211_MHAAABBN_00533:0.0114607,TT9_LFPAFLNI_00769:0.00567144)0.92:0.0251303)0.997:0.113954)1:0.184933);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001452_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001452_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fed8d5c2ee1d7316df8adcc90dfbad24ed48b604
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001452_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02022:0.0391943,(AS2_ACLBLIBL_02129:0.0485996,(TT9_LFPAFLNI_00768:0.00869902,(KBS0714_MOLHKGIG_00801:0.02593,SA211_MHAAABBN_00532:0.0173043)0.752:0.00840556)0.953:0.0716819)1:0.0391943);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001454_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001454_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3e4c7895f375a7d1c314b044358515dcbb27450f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001454_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02024:0.0838874,(AS2_ACLBLIBL_02131:0.431352,(KBS0714_MOLHKGIG_00830:0.010562,(TT9_LFPAFLNI_00799:0.0397067,SA211_MHAAABBN_00562:0.0442832)0.617:0.00111948)1:0.951464)1:0.0838874);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001456_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001456_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b091a5768c0f32ff9b146689ce8938c59a61afb7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001456_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02026:0.0603045,(AS2_ACLBLIBL_02133:0.0108558,(KBS0714_MOLHKGIG_00798:5e-09,(SA211_MHAAABBN_00529:0,TT9_LFPAFLNI_00765:0):0.0101602):0.0096847):0.0603045);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001457_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001457_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b33eb72364731a26a7a3f54e5c9b624495240526
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001457_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02027:0.0244512,(AS2_ACLBLIBL_02134:0.0184848,(KBS0714_MOLHKGIG_00797:0.00200195,(SA211_MHAAABBN_00528:0.00401433,TT9_LFPAFLNI_00764:0.00200556)0.765:6e-09)0.346:0.00758977)1:0.0244512);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001458_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001458_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..db47f2aee94e5ac586c9eab08aaa447d49a3244c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001458_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02028:0.0366805,(AS2_ACLBLIBL_02135:0.0154795,((KBS0714_MOLHKGIG_00796:0,SA211_MHAAABBN_00527:0):5e-09,TT9_LFPAFLNI_00763:0.00320484):0.0287085):0.0366805);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001459_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001459_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b5a4c072b0ed628a9c4df29ebf4ca9b499a45bab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001459_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02029:0.0319928,(AS2_ACLBLIBL_02136:0.0065124,(KBS0714_MOLHKGIG_00795:0.00529032,(SA211_MHAAABBN_00526:0.00175964,TT9_LFPAFLNI_00762:5e-09)0.824:5e-09)0.987:0.0171517)1:0.0319928);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001464_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001464_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..61070315559c305a3460be578970a3d2eed5b440
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001464_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02034:0.234152,(AS2_ACLBLIBL_02141:0.0750644,((KBS0714_MOLHKGIG_00790:0,SA211_MHAAABBN_00521:0):0.0215477,TT9_LFPAFLNI_00757:5e-09):0.17164):0.234152);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001465_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001465_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..06862a2fe4811c79af11ec7a08cf5c5a7ef967b6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001465_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02035:0.160508,(AS2_ACLBLIBL_02142:0.0747084,((KBS0714_MOLHKGIG_00789:0,SA211_MHAAABBN_00520:0):0.00680903,TT9_LFPAFLNI_00756:0.00677392):0.0725989):0.160508);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001466_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001466_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b00aabe7328ed157e4eba65fe5265aee7a70d1a5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001466_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02036:0.0786905,(AS2_ACLBLIBL_02143:0.067983,((KBS0714_MOLHKGIG_00788:0,SA211_MHAAABBN_00519:0):5e-09,TT9_LFPAFLNI_00755:0.0113211):0.0491301):0.0786905);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001467_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001467_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..af006dc60c00e61f057058529cba031a9e432dcd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001467_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02038:0.0688439,(AS2_ACLBLIBL_02144:0.0508174,((KBS0714_MOLHKGIG_00786:0,SA211_MHAAABBN_00517:0):0.0027169,TT9_LFPAFLNI_00753:0.00256207):0.0156241):0.0688439);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001468_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001468_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..27bc41e4b2e80be034dace95f7016e2163cff92d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001468_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02039:0.119443,(AS2_ACLBLIBL_02145:0.0670001,(SA211_MHAAABBN_00516:0.0041509,(TT9_LFPAFLNI_00752:0.00853349,KBS0714_MOLHKGIG_00785:0.00284252)0.385:0.00148335)0.997:0.0620941)1:0.119443);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001469_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001469_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cdcc6a4e39f362626b671c39adc24e43eeee7c25
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001469_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02040:0.171411,(AS2_ACLBLIBL_02146:0.0819429,(TT9_LFPAFLNI_00751:0.0032986,(KBS0714_MOLHKGIG_00784:0.0124532,SA211_MHAAABBN_00515:0.00291821)0.763:0.00924269)0.995:0.0894315)1:0.171411);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001470_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001470_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bf20c6dcc96f182377efadda67ac877f8b7f7165
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001470_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02041:0.0472897,(AS2_ACLBLIBL_02147:0.0133698,(KBS0714_MOLHKGIG_00783:0,SA211_MHAAABBN_00514:0,TT9_LFPAFLNI_00750:0):0.0290474):0.0472897);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001472_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001472_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3a060304756edba85d3beef86976a411dd36760e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001472_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02043:0.105452,(AS2_ACLBLIBL_02149:0.0227948,(TT9_LFPAFLNI_00748:0.00622259,(KBS0714_MOLHKGIG_00781:0.00199671,SA211_MHAAABBN_00512:0.00201529)0.954:0.00992523)0.908:0.0147166)1:0.105452);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001473_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001473_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..50a6241ab67a6f66376265e1f46c1d220ae003fe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001473_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02044:0.0830451,(AS2_ACLBLIBL_02150:0.00513164,(SA211_MHAAABBN_00511:5e-09,(KBS0714_MOLHKGIG_00780:0.00177644,TT9_LFPAFLNI_00747:0.0053247)0.357:0.0035442)0.918:0.0128676)1:0.0830451);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001474_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001474_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e505e31eca8b0b0673974336381017fa8b94089e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001474_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02046:0.100937,(AS2_ACLBLIBL_02151:0.0197485,(SA211_MHAAABBN_00510:0.0124211,(KBS0714_MOLHKGIG_00779:0.00499212,TT9_LFPAFLNI_00746:0.00506773)0.743:0.00266556)0.918:0.0159038)1:0.100937);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001475_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001475_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fdc7057bb0bf08e9e7568eeed3f5d6316a2df147
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001475_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02047:0.0699475,(AS2_ACLBLIBL_02152:0.0107727,(KBS0714_MOLHKGIG_00778:0,SA211_MHAAABBN_00509:0,TT9_LFPAFLNI_00745:0):5e-09):0.0699475);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001476_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001476_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ea00f7e456df9c58a7ddbec36b4f0df652d2ee67
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001476_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02048:0.10078,(TT9_LFPAFLNI_00744:5e-09,(SA211_MHAAABBN_00508:5e-09,(AS2_ACLBLIBL_02153:0.0361095,KBS0714_MOLHKGIG_00777:0.0117375)0.787:0.0121235)0.919:0.0119586)1:0.10078);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001481_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001481_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9049f2f111ebd64ad24dbe64404aa458b8819e9c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001481_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02054:0.0184214,(TT9_LFPAFLNI_00738:0.00793347,(KBS0714_MOLHKGIG_00771:5e-09,(AS2_ACLBLIBL_02159:0.00996236,SA211_MHAAABBN_00502:0.0032729)0.304:0.00162861)0.814:0.00440918)1:0.0184214);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001482_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001482_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3e1f2c0d7219767a230bed77788769e1be907d4b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001482_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02056:0.0910652,(AS2_ACLBLIBL_02160:0.141428,(SA211_MHAAABBN_00501:0.007312,(KBS0714_MOLHKGIG_00770:0.00707892,TT9_LFPAFLNI_00734:0.0176087)0.65:0.022486)0.954:0.0876421)1:0.0910652);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001485_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001485_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4642b98ea3397000e05a19edf0d34590d6524e90
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001485_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02060:0.115343,(AS2_ACLBLIBL_02164:0.0783587,((KBS0714_MOLHKGIG_00765:0,SA211_MHAAABBN_00495:0):5e-09,TT9_LFPAFLNI_00729:0.0137265):0.0891822):0.115343);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001489_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001489_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1dfeaedd8bee3ae67063297f8fe1ada575d688c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001489_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02065:0.148579,(AS2_ACLBLIBL_02170:0.285907,(TT9_LFPAFLNI_00724:0.0085772,(KBS0714_MOLHKGIG_00760:0.0199509,SA211_MHAAABBN_00490:0.0111206)0.206:0.0102185)1:0.185976)1:0.148579);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001490_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001490_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..04aa1fb8d53448662c412b65f2f359952ab222f5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001490_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02066:0.0759111,(AS2_ACLBLIBL_02171:0.0346883,((KBS0714_MOLHKGIG_00759:0,SA211_MHAAABBN_00489:0):6e-09,TT9_LFPAFLNI_00723:0.00839093):0.0389905):0.0759111);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001493_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001493_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..699bca8dd7f18c58aaf5f77ae99f55146bac829f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001493_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02069:0.0790851,(AS2_ACLBLIBL_02174:0.0450384,(SA211_MHAAABBN_00486:0.00287507,(TT9_LFPAFLNI_00720:0.0117922,KBS0714_MOLHKGIG_00756:0.00788024)0.856:0.00381726)0.988:0.0197933)1:0.0790851);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001495_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001495_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..430662347861296b25a0150bcd41612a711f062b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001495_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02071:0.135775,(AS2_ACLBLIBL_02176:0.162494,(KBS0714_MOLHKGIG_00754:0.0171816,(SA211_MHAAABBN_00484:0.0106326,TT9_LFPAFLNI_00718:5e-09)0.908:0.0370308)0.89:0.0717428)1:0.135775);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001496_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001496_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..85d06cfe941f25dc7a6d1f9e101cde79998e730f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001496_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02072:0.0694813,(AS2_ACLBLIBL_02177:0.0426669,((KBS0714_MOLHKGIG_00753:0,TT9_LFPAFLNI_00717:0):5e-09,SA211_MHAAABBN_00483:0.00382249):0.0519247):0.0694813);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001499_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001499_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..740e0f1c48263d39ed701d4ba99d57a5df4dc7c3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001499_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02075:0.0457713,(AS2_ACLBLIBL_02180:0.0327876,(KBS0714_MOLHKGIG_00750:0.0052441,(SA211_MHAAABBN_00480:0.0106484,TT9_LFPAFLNI_00714:5e-09)0.726:0.00534749)0.888:0.0166364)1:0.0457713);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001500_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001500_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e5f3c9e6fff6186f17e86dd9acab864f1731ec50
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001500_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02082:0,(KBS0714_MOLHKGIG_00745:0,TT9_LFPAFLNI_00710:0,(AS2_ACLBLIBL_02184:0.017843,SA211_MHAAABBN_00476:0.0117327):5e-09):0);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001503_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001503_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2d6ef3cbe23a16ec4f8d4ac112e529dd66a369f6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001503_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02085:0.00365668,(TT9_LFPAFLNI_00707:0.00486978,(KBS0714_MOLHKGIG_00742:5e-09,(AS2_ACLBLIBL_02187:0.00974879,SA211_MHAAABBN_00473:5e-09)0.888:0.00243049)0.791:0.00244094)1:0.00365668);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001505_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001505_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f7ccf909a42f8b2e49d6e47e937e7b7b8579f5de
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001505_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02087:0.0302525,(AS2_ACLBLIBL_02189:0.0178592,((KBS0714_MOLHKGIG_00740:0,TT9_LFPAFLNI_00705:0):0.00256091,SA211_MHAAABBN_00471:5e-09):0.0116104):0.0302525);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001507_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001507_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fd6aa7eebc75bc04056d9ae92dd85755729de943
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001507_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02092:0.27512,(AS2_ACLBLIBL_02193:0.162965,((KBS0714_MOLHKGIG_00737:0,SA211_MHAAABBN_00468:0):5e-09,TT9_LFPAFLNI_00701:0.0203828):0.16499):0.27512);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001508_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001508_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..510f2e9f183bc82697379fb74d8cb26e3bbfbf59
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001508_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02093:0.20756,(AS2_ACLBLIBL_02194:0.154551,(SA211_MHAAABBN_00467:0.040841,(KBS0714_MOLHKGIG_00736:0.00848616,TT9_LFPAFLNI_00700:0.0206679)0.186:5e-09)0.541:0.0278567)1:0.20756);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001509_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001509_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..256cae3223a46dec4cad3cb5311a7e43792ae5fd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001509_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02094:0.211001,(AS2_ACLBLIBL_02195:0.143054,((KBS0714_MOLHKGIG_00735:0,SA211_MHAAABBN_00466:0):5e-09,TT9_LFPAFLNI_00699:0.0145386):0.0944869):0.211001);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001512_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001512_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..55ac23d592a89a2975e3e1319a6bf66cbc14814c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001512_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02096:0.110518,(AS2_ACLBLIBL_02220:0.028557,(KBS0714_MOLHKGIG_00733:5e-09,(TT9_LFPAFLNI_00697:0.0180416,SA211_MHAAABBN_00464:0.00720987)0.476:0.00349021)1:0.0784953)1:0.110518);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001513_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001513_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3f93d5f6f9e51f4a3d4aea73e91f09fa2be72387
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001513_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02097:0.0675361,(AS2_ACLBLIBL_02221:0.0480915,((KBS0714_MOLHKGIG_00732:0,SA211_MHAAABBN_00463:0):5e-09,TT9_LFPAFLNI_00696:0.00239867):0.027299):0.0675361);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001516_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001516_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ce82d39aabc0cd099ab728b23ef416060b4491cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001516_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02102:0.174513,(AS2_ACLBLIBL_02229:0.0656024,((KBS0714_MOLHKGIG_00728:0,TT9_LFPAFLNI_00692:0):0.0102412,SA211_MHAAABBN_00459:0.00505301):0.114092):0.174513);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001519_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001519_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..486756378cb98583ba75eb4fe3dd792cea4b91c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001519_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02105:0.126634,(AS2_ACLBLIBL_02233:0.0869018,((KBS0714_MOLHKGIG_00725:0,SA211_MHAAABBN_00456:0):0.00607455,TT9_LFPAFLNI_00689:0.0107233):0.144328):0.126634);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001520_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001520_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5f554def34ee87b06e66da3753a90ff45d1ca8c7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001520_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02106:0.266143,(AS2_ACLBLIBL_02234:0.109472,(KBS0714_MOLHKGIG_00724:0,SA211_MHAAABBN_00455:0,TT9_LFPAFLNI_00688:0):0.0716758):0.266143);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001521_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001521_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2cff23430728d17fbe239210dec2e06c5c5c772c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001521_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02107:0.0932517,(AS2_ACLBLIBL_02235:0.043099,(SA211_MHAAABBN_00454:0.00614231,(KBS0714_MOLHKGIG_00723:0.00292275,TT9_LFPAFLNI_00687:0.00290939)0.916:0.0114727)0.995:0.0714206)1:0.0932517);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001522_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001522_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..18468e18f0ec11a0d3d7ef27dee484431029c10c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001522_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02108:0.0596623,(AS2_ACLBLIBL_02236:0.0130468,(KBS0714_MOLHKGIG_00722:5e-09,(SA211_MHAAABBN_00453:0,TT9_LFPAFLNI_00686:0):0.00380803):0.0220394):0.0596623);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001523_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001523_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6ab42dd1f5333cf445bb8294739a5f4dbe26e12a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001523_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02109:0.0935358,(AS2_ACLBLIBL_02237:0.0148529,(KBS0714_MOLHKGIG_00721:0,SA211_MHAAABBN_00452:0,TT9_LFPAFLNI_00685:0):0.0263008):0.0935358);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001525_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001525_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cfe8fde2c3f1fc4c8c4eae1e1f84f52d311e5593
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001525_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02111:0.0243977,(AS2_ACLBLIBL_02239:0.0186952,((KBS0714_MOLHKGIG_00719:0,SA211_MHAAABBN_00450:0):5e-09,TT9_LFPAFLNI_00683:0.00464988):6e-09):0.0243977);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001526_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001526_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..25efbf4f5a8ad3bf1c64a5d6d4459d3d35893bfb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001526_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02112:0.0837607,(AS2_ACLBLIBL_02240:0.0417151,((KBS0714_MOLHKGIG_00718:0,TT9_LFPAFLNI_00682:0):0.00831769,SA211_MHAAABBN_00449:0.00770516):0.0356281):0.0837607);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001530_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001530_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..905d4a87661634dab40e8c9e89651c8831d9819c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001530_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02116:0.0365837,(AS2_ACLBLIBL_02244:0.0474341,(SA211_MHAAABBN_00445:0.00535988,(KBS0714_MOLHKGIG_00714:0.00884317,TT9_LFPAFLNI_00678:5e-09)0.544:0.00348872)0.999:0.0387572)1:0.0365837);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001532_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001532_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b8797de9192ff0e92fa9ca8b1aa3ca42c8d0c3d0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001532_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02119:0.0120537,(AS2_ACLBLIBL_02246:0.0138915,(KBS0714_MOLHKGIG_00709:0.00886424,(SA211_MHAAABBN_00443:5e-09,TT9_LFPAFLNI_00676:0.00472122)0.866:0.0150856)1:0.302988)1:0.0120537);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001533_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001533_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..54d98fdbc766a3fe8187a322890196c5100f047f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001533_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02121:0.010341,((AS2_ACLBLIBL_02249:0.170167,SA211_MHAAABBN_00442:5e-09)0.853:0.00795707,(KBS0714_MOLHKGIG_00708:0.00466342,TT9_LFPAFLNI_00675:0.0110965)0.33:0.00313207)1:0.010341);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001536_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001536_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4d3a30dc2e10009f96eeb9f7b2515fe8189284c6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001536_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02124:0.111186,(AS2_ACLBLIBL_02252:0.104551,(KBS0714_MOLHKGIG_00705:0.0290785,(SA211_MHAAABBN_00439:0.010609,TT9_LFPAFLNI_00672:0.00717105)0.949:0.0307395)0.987:0.214122)1:0.111186);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001537_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001537_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3e9ada76078e567d1524bc94fc85baa06aa147d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001537_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02125:0.02703,(AS2_ACLBLIBL_02253:0.0159012,((KBS0714_MOLHKGIG_00704:0,SA211_MHAAABBN_00438:0):5e-09,TT9_LFPAFLNI_00671:0.00276607):0.00754937):0.02703);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001538_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001538_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a8fffe8384d086872ae827686b2aa24186ac3b67
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001538_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02126:0.111139,(AS2_ACLBLIBL_02254:0.0637942,(KBS0714_MOLHKGIG_00700:0,SA211_MHAAABBN_00437:0,TT9_LFPAFLNI_00670:0):0.0249739):0.111139);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001540_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001540_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..517c09b96f7ee1219b4fb0393c6098b322b2f536
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001540_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02128:0.193566,(AS2_ACLBLIBL_02257:0.0849127,(TT9_LFPAFLNI_00667:0.00965625,(KBS0714_MOLHKGIG_00697:0.0414919,SA211_MHAAABBN_00434:0.00565153)0.699:0.00779613)0.998:0.175662)1:0.193566);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001542_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001542_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6314ee9f7a967e5b3a223730aa3d0819ca611620
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001542_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02130:0.0994319,(AS2_ACLBLIBL_02259:0.026782,(SA211_MHAAABBN_00432:0.011513,(KBS0714_MOLHKGIG_00695:0.00470626,TT9_LFPAFLNI_00665:0.00674314)0.868:0.00833794)0.999:0.0626868)1:0.0994319);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001543_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001543_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..727a648c50352da53461e0be26d71f8156faea79
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001543_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00464:0.32222,(AS2_ACLBLIBL_02260:0.00820002,(SA211_MHAAABBN_00431:5e-09,(TT9_LFPAFLNI_00664:0.00523955,KBS0714_MOLHKGIG_00694:5e-09)0.902:0.00174344)0.824:0.0129092)1:0.32222);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001544_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001544_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..87fa5704535419a971bac61893e3e8ae97c346be
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001544_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02131:0.0916049,(AS2_ACLBLIBL_02261:0.0331258,(TT9_LFPAFLNI_00663:0.00782939,(KBS0714_MOLHKGIG_00693:0.00313689,SA211_MHAAABBN_00430:0.00312995)0.608:0.00157023)0.85:0.0227381)1:0.0916049);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001545_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001545_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5a673094703316add871931f2dd8fb33c12c04cd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001545_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02132:0.271623,(AS2_ACLBLIBL_02264:0.0466018,(TT9_LFPAFLNI_00661:6e-09,(KBS0714_MOLHKGIG_00691:0.0357847,SA211_MHAAABBN_00428:6e-09)0.845:0.00577268)0.985:0.15424)1:0.271623);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001546_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001546_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5a65969ee889fddb6cc9454818eab8d610311ae9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001546_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02133:0.0741574,(AS2_ACLBLIBL_02265:0.0871372,(KBS0714_MOLHKGIG_00690:0,SA211_MHAAABBN_00427:0,TT9_LFPAFLNI_00660:0):0.0730293):0.0741574);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001548_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001548_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3415467c18223fc4365473e1eda039c5dcaf15b2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001548_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02136:0.0273553,(AS2_ACLBLIBL_02269:0.030883,((KBS0714_MOLHKGIG_00688:0,TT9_LFPAFLNI_00658:0):5e-09,SA211_MHAAABBN_00425:0.00128559):0.0141544):0.0273553);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001549_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001549_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ae625d12fb1907f75c7ca878eca07185c660d084
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001549_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02137:0,(AS2_ACLBLIBL_02270:0,KBS0714_MOLHKGIG_00687:0,SA211_MHAAABBN_00424:0,TT9_LFPAFLNI_00657:0)1:0);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001552_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001552_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..85ec70d795d4e2663523941a0645c78f894ec65f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001552_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02140:0.093525,(AS2_ACLBLIBL_02279:0.0780813,((KBS0714_MOLHKGIG_00684:0,SA211_MHAAABBN_00421:0):0.00291229,TT9_LFPAFLNI_00654:0.00310559):0.0853633):0.093525);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001553_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001553_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..877b2f6f85b87a6e63a6e02836cf7dd7266a2ce0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001553_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02141:0.115274,(AS2_ACLBLIBL_02280:0.118765,(KBS0714_MOLHKGIG_00683:0,SA211_MHAAABBN_00420:0,TT9_LFPAFLNI_00653:0):0.086616):0.115274);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001554_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001554_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..18ce3912f77232fa0e5c969342bfaae2ca0da6e2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001554_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02142:0.0764014,(AS2_ACLBLIBL_02281:0.0413499,(KBS0714_MOLHKGIG_00682:0,SA211_MHAAABBN_00419:0,TT9_LFPAFLNI_00652:0):0.094389):0.0764014);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001556_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001556_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2cec45bb77defd1c68a03db953ef108f92372834
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001556_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02144:0.035354,(AS2_ACLBLIBL_02283:0.0373662,((KBS0714_MOLHKGIG_00680:0,SA211_MHAAABBN_00417:0):5e-09,TT9_LFPAFLNI_00650:0.0064166):0.0366625):0.035354);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001557_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001557_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4f2bbd790df84906df5e953969f94f9168a4c3b3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001557_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02145:0.0299911,(AS2_ACLBLIBL_02284:0.027097,(KBS0714_MOLHKGIG_00679:0.00212244,(SA211_MHAAABBN_00416:0.0031836,TT9_LFPAFLNI_00649:6e-09)0.8:5e-09)0.992:0.0278771)1:0.0299911);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001560_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001560_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..98786d6f0830aca1c4ea734cdd4b0411ad518b19
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001560_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02149:0.161065,(AS2_ACLBLIBL_02287:0.0208804,((KBS0714_MOLHKGIG_00675:0,TT9_LFPAFLNI_00645:0):0.00404487,SA211_MHAAABBN_00412:5e-09):0.0656668):0.161065);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001563_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001563_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..71c2d4f5f96d7350a216efe2d43d2f5e30df33c0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001563_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02152:0.023483,(AS2_ACLBLIBL_02290:0.0211007,(KBS0714_MOLHKGIG_00672:0.00252299,(SA211_MHAAABBN_00409:0,TT9_LFPAFLNI_00642:0):5e-09):0.0233795):0.023483);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001564_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001564_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2e0e0bdedb02b8e065822166f189fc62711d40ed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001564_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02153:0.122455,(AS2_ACLBLIBL_02291:0.0718002,(KBS0714_MOLHKGIG_00671:0,SA211_MHAAABBN_00408:0,TT9_LFPAFLNI_00641:0):0.0977868):0.122455);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001567_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001567_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cd6740b8d90d98c35ba184ca8bcb534c33abbaaf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001567_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02156:0.11374,(AS2_ACLBLIBL_02294:0.0349618,(TT9_LFPAFLNI_00638:5e-09,(KBS0714_MOLHKGIG_00668:0.00794127,SA211_MHAAABBN_00405:5e-09)0.441:0.00795003)0.863:0.0303615)1:0.11374);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001568_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001568_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9886ab1d54a607ea033dac7a30ab47a14fad2b50
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001568_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02157:0.208826,(AS2_ACLBLIBL_02301:0.091013,(TT9_LFPAFLNI_00632:0.00251321,(KBS0714_MOLHKGIG_00662:0.0089031,SA211_MHAAABBN_00399:5e-09)0.679:0.00650348)0.977:0.0966367)1:0.208826);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001569_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001569_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5702cc4e8a81eef30bc9c36fea7a3e9d78b90098
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001569_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02158:0.132325,(AS2_ACLBLIBL_02302:0.112857,(SA211_MHAAABBN_00398:0.00629425,(TT9_LFPAFLNI_00631:5e-09,KBS0714_MOLHKGIG_00661:0.0063034)0:5e-09)0.639:0.00689945)1:0.132325);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001570_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001570_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..de6f04992fdc72e0e671229815a0602ed0d2a6ca
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001570_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02159:0.210765,(AS2_ACLBLIBL_02303:0.0744604,(TT9_LFPAFLNI_00630:0.011982,(KBS0714_MOLHKGIG_00660:5e-09,SA211_MHAAABBN_00397:0.00623085)0.296:0.00800552)0.903:0.044799)1:0.210765);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001572_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001572_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8e199a49719ed71e9a42b2868367388d3c31776f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001572_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02161:0.211371,(AS2_ACLBLIBL_02305:0.0311968,(TT9_LFPAFLNI_00628:5e-09,(KBS0714_MOLHKGIG_00658:0.00257448,SA211_MHAAABBN_00395:0.00257168)0.811:0.00256753)0.935:0.0292409)1:0.211371);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001574_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001574_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1bceb6e088984af43106f7daa17215d9150d9849
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001574_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02165:0.0400386,(AS2_ACLBLIBL_02308:0.0187429,(KBS0714_MOLHKGIG_00655:0,SA211_MHAAABBN_00392:0,TT9_LFPAFLNI_00625:0):0.0347582):0.0400386);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001576_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001576_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..67b567238cf6ce3732a925113be26f0928cf69e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001576_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02167:0.0305471,(AS2_ACLBLIBL_02310:0.0317805,(KBS0714_MOLHKGIG_00653:0.00988404,(SA211_MHAAABBN_00390:0,TT9_LFPAFLNI_00623:0):0.0112586):0.00954051):0.0305471);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001577_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001577_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..240242ed8153cf534835f747d9ed555e3835bcd8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001577_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02168:0.038185,(AS2_ACLBLIBL_02311:0.0597974,(SA211_MHAAABBN_00389:0.00347845,(KBS0714_MOLHKGIG_00652:0.00330857,TT9_LFPAFLNI_00622:5e-09)0.795:6e-09)0.831:0.00937833)1:0.038185);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001578_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001578_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..377ea1ed19ddf99608c2858c364fa8eb6f831f4c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001578_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02169:0.252702,(AS2_ACLBLIBL_02312:0.219616,(KBS0714_MOLHKGIG_00651:0.020471,(SA211_MHAAABBN_00388:0.0239831,TT9_LFPAFLNI_00621:0.0036144)0.914:0.0625794)0.993:0.261167)1:0.252702);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001579_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001579_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4fed7696da1d2ffb3d522b42ed630fe2f573d997
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001579_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02171:0.214012,(AS2_ACLBLIBL_02314:0.0534236,(SA211_MHAAABBN_00386:0.0153736,(KBS0714_MOLHKGIG_00649:0.0186052,TT9_LFPAFLNI_00619:0.00585684)0.823:0.00912447)0.97:0.0577645)1:0.214012);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001580_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001580_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f4e6b76bcdd373f926fd211780c177f01e4dce2f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001580_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02175:0.121257,(AS2_ACLBLIBL_02316:0.0358152,(TT9_LFPAFLNI_00617:0.00956273,(KBS0714_MOLHKGIG_00647:5e-09,SA211_MHAAABBN_00384:0.00479609)0.739:0.00246553)0.992:0.0456424)1:0.121257);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001582_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001582_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c817c371352d19ef0e698a7160a6be5221651412
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001582_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02183:0.00476878,(TT9_LFPAFLNI_00612:0.00945536,(AS2_ACLBLIBL_02320:0.16251,(KBS0714_MOLHKGIG_00642:0.00949332,SA211_MHAAABBN_00379:5e-09)0.657:0.00327429)0.761:0.0062793)1:0.00476878);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001583_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001583_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5cfac69e23496ac4c693a34a8c9329754dbcb020
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001583_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02184:0.00157063,(KBS0714_MOLHKGIG_00641:5e-09,(SA211_MHAAABBN_00378:5e-09,(AS2_ACLBLIBL_02321:0.0949064,TT9_LFPAFLNI_00611:0.00318555)0.882:0.00939523)0.963:0.00945666)1:0.00157063);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001584_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001584_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..befb275008d96f955684e43ee37571ca333ef18e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001584_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00676:0.772205,(SA211_MHAAABBN_00359:5e-09,(KBS0714_MOLHKGIG_00168:0.00999145,(AS2_ACLBLIBL_02333:5e-09,TT9_LFPAFLNI_02011:0.00500257)0.935:5e-09)0.731:0.00499533)1:0.772205);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001585_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001585_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7073c7a3e2cc4f9b327594b6e22a3fe579f8e807
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001585_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02343:0.0187785,((SA211_MHAAABBN_00328:0.00430392,TT9_LFPAFLNI_02009:5e-09)1:0.207966,(KBS0714_MOLHKGIG_00612:0.0484081,SA211_MHAAABBN_01772:0.108672)0.984:0.0898122)1:0.0187785);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001586_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001586_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d43cf58f7b21f19f74ea5440673aacce583843d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001586_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02245:0.0279587,(SA211_MHAAABBN_00317:0.0346269,(TT9_LFPAFLNI_00585:0.0440945,(KBS0714_MOLHKGIG_00584:0.0113569,AS2_ACLBLIBL_02350:0.702018)0.715:0.0114062)0.846:0.0247229)1:0.0279587);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001587_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001587_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..85f40558be8604549d48b922f8ba234a2d2ab3f1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001587_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02246:0.0626028,(AS2_ACLBLIBL_02351:0.0301153,(TT9_LFPAFLNI_00584:0.00485844,(KBS0714_MOLHKGIG_00583:0.00643601,SA211_MHAAABBN_00316:0.00159958)0.201:0.00490687)0.991:0.0306983)1:0.0626028);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001589_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001589_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8c200736fcfccb4fbd4e70b7d13f77d1cb3efdb2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001589_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02248:0.181238,(KBS0714_MOLHKGIG_00579:0.0361074,(AS2_ACLBLIBL_02354:0.123323,(SA211_MHAAABBN_00311:0.0130469,TT9_LFPAFLNI_00580:5e-09)0.864:0.0140485)0.925:0.0422831)1:0.181238);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001590_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001590_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1976695872ccff1c7e030e59b16929fef980a7e7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001590_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02249:0.0926598,(AS2_ACLBLIBL_02358:0.034336,(TT9_LFPAFLNI_00576:0.00803684,(KBS0714_MOLHKGIG_00575:0.00380013,SA211_MHAAABBN_00307:0.00786978)0.751:0.00380011)0.982:0.0372262)1:0.0926598);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001591_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001591_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..70f70a49629c6f7f6d72b2974087c20dd98bbcb5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001591_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02250:0.0326222,(AS2_ACLBLIBL_02359:0.0589048,(TT9_LFPAFLNI_00575:0.00400463,(KBS0714_MOLHKGIG_00574:0.00484646,SA211_MHAAABBN_00306:0.00659511)0.832:0.00994213)0.946:0.027311)1:0.0326222);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001592_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001592_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..93ee9802cfcb062d525e4e79c2e112604dffa115
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001592_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02251:0.0913681,(AS2_ACLBLIBL_02360:5e-09,(SA211_MHAAABBN_00305:5e-09,(TT9_LFPAFLNI_00574:0.0273587,KBS0714_MOLHKGIG_00573:0.012521)0.611:0.0112046)1:0.51918)1:0.0913681);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001593_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001593_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4a713f9295e211cacd3be906a7660dc6984cfaf1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001593_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02253:0.0316841,(AS2_ACLBLIBL_02373:0.0806931,(SA211_MHAAABBN_00296:0.0225903,(KBS0714_MOLHKGIG_00572:5e-09,TT9_LFPAFLNI_00573:0.0147774)0.566:0.0189101)0.998:0.0871691)1:0.0316841);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001596_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001596_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..409540f1472d52947b3474c875005a2ab2a56d18
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001596_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02262:0.0654399,(AS2_ACLBLIBL_02378:0.115506,((KBS0714_MOLHKGIG_00565:0,TT9_LFPAFLNI_00568:0):0.0250804,SA211_MHAAABBN_00290:5e-09):0.0462702):0.0654399);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001597_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001597_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6e5039f6de91786672a6a2aa688289b8cf5e110f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001597_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02263:0.135453,(AS2_ACLBLIBL_02379:0.0868574,(SA211_MHAAABBN_00289:0.00457656,(KBS0714_MOLHKGIG_00564:0.00354816,TT9_LFPAFLNI_00567:0.00540412)0.756:0.00862608)1:0.179635)1:0.135453);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001599_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001599_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d6b3c2698e5e71bc5c5e39ca30afaa61eaab2b58
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001599_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02265:0.154363,(AS2_ACLBLIBL_02381:0.0780985,(SA211_MHAAABBN_00287:0.00366196,(KBS0714_MOLHKGIG_00562:0.00264586,TT9_LFPAFLNI_00565:0.00264491)0.741:0.00429927)0.985:0.0603857)1:0.154363);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001601_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001601_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5bc9569d799827ef8e31ca1458edb74f68d3ee48
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001601_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02267:0.0414377,(AS2_ACLBLIBL_02383:0.0551284,(KBS0714_MOLHKGIG_00560:0.0068074,(SA211_MHAAABBN_00285:5e-09,TT9_LFPAFLNI_00563:0.0288874)0.774:0.00753224)0.973:0.0598313)1:0.0414377);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001603_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001603_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f2b41b631e1fb6842bb76bec735291cd69a076cb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001603_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02269:0.101869,(AS2_ACLBLIBL_02385:0.17835,(TT9_LFPAFLNI_00561:0.0040584,(KBS0714_MOLHKGIG_00558:0.0318605,SA211_MHAAABBN_00283:0.00281049)0.768:0.00445256)1:0.117384)1:0.101869);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001604_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001604_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..97b86594458ca6e2ad964f0547c0c5af2c9ed0ed
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001604_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02271:0.0513603,(AS2_ACLBLIBL_02388:0.0191245,((KBS0714_MOLHKGIG_00557:0,TT9_LFPAFLNI_00560:0):5e-09,SA211_MHAAABBN_00282:0.00383245):0.0125229):0.0513603);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001607_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001607_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d9662a2fef5fd91e76fd7ea562bf350031967a4f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001607_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02277:0.0872775,(AS2_ACLBLIBL_02392:0.128947,((KBS0714_MOLHKGIG_00553:0,SA211_MHAAABBN_00278:0):5e-09,TT9_LFPAFLNI_00556:0.0323608):0.673542):0.0872775);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001608_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001608_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..23d2bd6b2cc8a2cb068bf954a29677938cbec33e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001608_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02278:0.0752442,(AS2_ACLBLIBL_02393:0.0404507,((KBS0714_MOLHKGIG_00552:0,SA211_MHAAABBN_00277:0):0.00325023,TT9_LFPAFLNI_00555:5e-09):0.101668):0.0752442);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001609_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001609_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1548ffb1914fa956df94f3f60bc1354d0e871124
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001609_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02280:0.0940857,(AS2_ACLBLIBL_02396:0.0609986,(KBS0714_MOLHKGIG_00550:0,SA211_MHAAABBN_00275:0,TT9_LFPAFLNI_00553:0):0.0745292):0.0940857);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001610_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001610_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fe73e0a844cc7475f9720d4f561422a64f24b5b8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001610_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02281:0.115185,(AS2_ACLBLIBL_02397:0.0695351,(KBS0714_MOLHKGIG_00549:0.00508667,(SA211_MHAAABBN_00274:5e-09,TT9_LFPAFLNI_00552:0.00751927)0.83:0.00495922)0.986:0.0479088)1:0.115185);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001612_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001612_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..12ffd9a63b527802c44dbff0d8f54c31df042dae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001612_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02284:0.0392128,(AS2_ACLBLIBL_02401:0.00728324,((KBS0714_MOLHKGIG_00546:0,TT9_LFPAFLNI_00549:0):5e-09,SA211_MHAAABBN_00271:0.0018609):0.0179141):0.0392128);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001613_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001613_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4c6287942a36c4e6d64dc31df7ac2efe81015a5b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001613_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02285:0.331871,(AS2_ACLBLIBL_02402:0.055189,((KBS0714_MOLHKGIG_00545:0,TT9_LFPAFLNI_00548:0):0.0319873,SA211_MHAAABBN_00270:5e-09):0.269382):0.331871);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001615_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001615_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6be05c344901831bb7fb38da48b966bac2b9fd9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001615_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02287:0.17921,(AS2_ACLBLIBL_02404:0.146743,(KBS0714_MOLHKGIG_00543:0.0148815,(SA211_MHAAABBN_00268:0.00434703,TT9_LFPAFLNI_00546:0.0223338)0.844:0.0163612)1:0.217578)1:0.17921);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001616_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001616_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4cc98a376cb9993093d609a2afe9093c64d5deb7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001616_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02290:0.0456196,(AS2_ACLBLIBL_02408:0.0761057,(SA211_MHAAABBN_00265:5e-09,(KBS0714_MOLHKGIG_00541:0.0085683,TT9_LFPAFLNI_00544:0.00640418)0.797:0.00212187)1:0.136057)1:0.0456196);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001617_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001617_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..46b3291380e7f4f4b5f9595afb3e23156f85708f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001617_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02291:0.0717797,(AS2_ACLBLIBL_02409:0.033684,(SA211_MHAAABBN_00264:0.00293723,(KBS0714_MOLHKGIG_00540:5e-09,TT9_LFPAFLNI_00543:0.0040248)0.929:0.00925963)0.996:0.0692899)1:0.0717797);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001622_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001622_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b42a073641e089ed98a83be874401e3611ba7d32
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001622_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02297:0.349065,(AS2_ACLBLIBL_02415:0.296802,(KBS0714_MOLHKGIG_00534:0.0114941,(SA211_MHAAABBN_00258:0.020296,TT9_LFPAFLNI_00537:0.0213797)0.868:0.0116089)0.776:0.0509946)1:0.349065);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001623_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001623_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1772be3afca5cbbde59c79f45f1a7664bd9bdccd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001623_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02301:0.220971,(AS2_ACLBLIBL_02419:0.218117,(KBS0714_MOLHKGIG_00533:0.0054236,(SA211_MHAAABBN_00254:0.0144215,TT9_LFPAFLNI_00533:0.00659499)0.869:0.0216699)0.998:0.19673)1:0.220971);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001624_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001624_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7b4ecd2dfd0db457cd900cec195c4c38e8053ffd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001624_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02302:0.35373,(AS2_ACLBLIBL_02420:0.234583,(TT9_LFPAFLNI_00532:0.00227956,(KBS0714_MOLHKGIG_00532:0.0438063,SA211_MHAAABBN_00253:0.0357382)0.771:0.0251848)0.988:0.3425)1:0.35373);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001631_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001631_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..98949b3f1fd09d9c492b2824855a07bc1c8f6dcd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001631_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02316:0.196747,(TT9_LFPAFLNI_00516:0.179034,(SA211_MHAAABBN_00206:0.940338,(AS2_ACLBLIBL_02432:0.526237,SA211_MHAAABBN_00237:0.42691)0.952:0.259291)1:0.706676)1:0.196747);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001633_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001633_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a1e54a898550f1e456e701b114f905822c9dfb6c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001633_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02321:0.0733603,(AS2_ACLBLIBL_02438:0.0692489,(TT9_LFPAFLNI_00512:0.0753434,(KBS0714_MOLHKGIG_00513:0.0824887,SA211_MHAAABBN_00233:0.0620532)0.998:0.0832273)0.667:0.0484339)1:0.0733603);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001634_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001634_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7e0ec76ad0b4a8207f43612174b2b81f2353cb9c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001634_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02322:0.0735788,(SA211_MHAAABBN_00232:0.100317,(KBS0714_MOLHKGIG_00512:0.00787567,(AS2_ACLBLIBL_02439:0.0282093,TT9_LFPAFLNI_00511:0.00932868)0.825:0.0177683)1:0.219003)1:0.0735788);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001635_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001635_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..957ebb58e31a4fc084a00dbeb30b89b270bdf79b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001635_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02323:0.314477,((AS2_ACLBLIBL_02440:0.0202225,KBS0714_MOLHKGIG_00511:0.0215064)0.777:0.0140858,(TT9_LFPAFLNI_00510:0.0381299,SA211_MHAAABBN_00231:0.0402183)0.719:0.0139006)1:0.314477);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001638_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001638_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e68237969501f70192cc4c47140e7777ac17c85d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001638_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02328:0.137808,(AS2_ACLBLIBL_02444:0.191417,(KBS0714_MOLHKGIG_00506:0.00791746,(SA211_MHAAABBN_00226:0.0219779,TT9_LFPAFLNI_00505:0.010844)0.872:0.0167596)1:0.209726)1:0.137808);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001639_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001639_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7aa3c5c44fdb8270b6dbd2bffe64599f05fb57b2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001639_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02329:0.0603962,(AS2_ACLBLIBL_02445:0.0781028,(SA211_MHAAABBN_00225:0.00938038,(KBS0714_MOLHKGIG_00505:0.00364714,TT9_LFPAFLNI_00504:0.0145221)0.331:0.00755429)0.997:0.074163)1:0.0603962);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001644_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001644_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7cf5255b9ee85f54571781ba6e53d44a18151e38
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001644_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02334:0.0499648,(AS2_ACLBLIBL_02450:0.0400879,(KBS0714_MOLHKGIG_00497:0.0034793,(SA211_MHAAABBN_00218:0.0177022,TT9_LFPAFLNI_00496:0.00191659)0.585:0.00236811)1:0.0529319)1:0.0499648);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001646_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001646_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..594b1aa00f8cdc728709a20009f192872a470349
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001646_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02338:0.106806,(AS2_ACLBLIBL_02454:0.0816974,(KBS0714_MOLHKGIG_00493:0.011065,(SA211_MHAAABBN_00214:0,TT9_LFPAFLNI_00492:0):0.00458767):0.0805928):0.106806);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001647_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001647_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..464f713280356793d917fc024d51023190bd8584
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001647_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02339:0.053565,(AS2_ACLBLIBL_02455:0.106073,(KBS0714_MOLHKGIG_00492:6e-09,(SA211_MHAAABBN_00213:0.0063174,TT9_LFPAFLNI_00491:5e-09)0.916:0.00637551)0.978:0.0497355)1:0.053565);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001648_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001648_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0ac421c93251c27552248a065248f1d6a01cb91d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001648_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02340:0.0824836,(AS2_ACLBLIBL_02456:0.0334722,(SA211_MHAAABBN_00212:0.00651574,(KBS0714_MOLHKGIG_00491:0.00325347,TT9_LFPAFLNI_00490:0.00327194)0.754:0.00166739)0.999:0.035906)1:0.0824836);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001649_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001649_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..600ebe31bbb9ec8226100057d6a34840d183cf3a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001649_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02341:0.0892601,((AS2_ACLBLIBL_02457:0.0125238,TT9_LFPAFLNI_00489:5e-09)0.707:0.00265935,(SA211_MHAAABBN_00211:0.0126338,KBS0714_MOLHKGIG_00490:0.00619641)0.583:0.00684401)1:0.0892601);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001650_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001650_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..55aef11224abc510f67cf5c368b515b857db4796
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001650_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02343:0.115917,(AS2_ACLBLIBL_02459:0.0164242,(SA211_MHAAABBN_00207:0.0124622,(KBS0714_MOLHKGIG_00487:0.00339532,TT9_LFPAFLNI_00487:5e-09)0.932:0.0131568)0.967:0.0313191)1:0.115917);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001651_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001651_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4c24eaa038564b8b56e42fe4a4749d5d8df1dfc9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001651_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02344:0.1207,(AS2_ACLBLIBL_02461:0.053121,(TT9_LFPAFLNI_00486:0.0173138,(KBS0714_MOLHKGIG_00486:0.00824294,SA211_MHAAABBN_00205:0.00545542)0.604:0.00468639)1:0.0591335)1:0.1207);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001655_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001655_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..35ecf1437abb21262fc5e9f10e923d4b1b6736c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001655_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02349:0.19174,(AS2_ACLBLIBL_02465:0.0331205,(KBS0714_MOLHKGIG_00482:0,SA211_MHAAABBN_00200:0,TT9_LFPAFLNI_00482:0):0.10439):0.19174);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001656_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001656_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d08e6870beab4fee137eaa504c1f0ed60c2f7e42
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001656_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02350:0.161241,(AS2_ACLBLIBL_02466:0.0545644,(KBS0714_MOLHKGIG_00481:0.00552588,(SA211_MHAAABBN_00199:0.0111294,TT9_LFPAFLNI_00481:5e-09)0.317:2.174e-06)0.971:0.12641)1:0.161241);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001658_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001658_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..efdd8ac821e91180c41be204e9450b4346555e7a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001658_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02352:0.163116,(AS2_ACLBLIBL_02468:0.123153,((KBS0714_MOLHKGIG_00479:0,TT9_LFPAFLNI_00479:0):0.00826953,SA211_MHAAABBN_00197:0.00652452):0.110024):0.163116);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001661_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001661_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5a50e6026dd077bfcfc8f2168a100c82f42c2bbe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001661_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02356:0.199281,(AS2_ACLBLIBL_02471:0.112299,((KBS0714_MOLHKGIG_00475:0,TT9_LFPAFLNI_00475:0):0.00653933,SA211_MHAAABBN_00193:0.00857647):0.0965862):0.199281);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001663_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001663_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd6dd5f2620bb0a30b7348a60925fa725c73fef6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001663_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02358:0.0223276,(AS2_ACLBLIBL_02474:0.0538064,(KBS0714_MOLHKGIG_00473:5e-09,(TT9_LFPAFLNI_00473:0.00568823,SA211_MHAAABBN_00191:5e-09)0.438:0.00283933)0.846:0.00995376)1:0.0223276);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001664_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001664_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d456ef36857bde04d80c43244e3c1e361c236df0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001664_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02359:0.238655,(AS2_ACLBLIBL_02475:0.0881506,((KBS0714_MOLHKGIG_00472:0,SA211_MHAAABBN_00190:0):0.0149784,TT9_LFPAFLNI_00472:5e-09):0.0815079):0.238655);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001665_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001665_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4e3bf0b74beaaa677cc2d8a26f2b4de6a567715d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001665_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02360:0.0414623,(AS2_ACLBLIBL_02476:0.149161,((KBS0714_MOLHKGIG_00471:0,SA211_MHAAABBN_00189:0):5e-09,TT9_LFPAFLNI_00471:0.00431064):0.132641):0.0414623);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001668_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001668_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..abb4f7f680a00c716f36ef2c20824eee9bb0fd4a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001668_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02363:0.0884787,(AS2_ACLBLIBL_02479:0.0905815,(SA211_MHAAABBN_00186:5e-09,(KBS0714_MOLHKGIG_00468:0.00411089,TT9_LFPAFLNI_00468:0.00205169)0.801:0.00205315)0.997:0.0753633)1:0.0884787);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001670_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001670_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cb8f75cf2fd157ce32af2d334e3f205f1e70e46a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001670_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02365:0.0943899,(AS2_ACLBLIBL_02481:0.0889742,(KBS0714_MOLHKGIG_00466:0,SA211_MHAAABBN_00184:0,TT9_LFPAFLNI_00466:0):0.0854719):0.0943899);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001671_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001671_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2d0517f645930282e2acca77f9de1f3a998e8f62
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001671_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02366:0.11489,(AS2_ACLBLIBL_02482:0.0465942,(TT9_LFPAFLNI_00465:5e-09,(KBS0714_MOLHKGIG_00465:5e-09,SA211_MHAAABBN_00183:0.00427259)0.894:0.00858828)0.986:0.0570658)1:0.11489);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001675_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001675_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1f968cd2f6e2d92ad441f3c9890a3977f138a635
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001675_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02371:0.233982,(AS2_ACLBLIBL_02487:0.137269,(KBS0714_MOLHKGIG_00460:0.00766823,(SA211_MHAAABBN_00178:0.00920244,TT9_LFPAFLNI_00460:0.00454586)0.753:0.0108222)0.966:0.117995)1:0.233982);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001680_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001680_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..641cc42ec267a6542af57fcd4ccc2fa0676146cf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001680_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02377:0.0627156,((SA211_MHAAABBN_00172:5e-09,TT9_LFPAFLNI_00454:0.0021095)1:0.112731,(AS2_ACLBLIBL_02505:0.0428323,KBS0714_MOLHKGIG_00451:0.0317487)1:0.0729514)1:0.0627156);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001681_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001681_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6f749b9ceef5f3b8b58c709600f38b0b27f1a825
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001681_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02378:0.127309,(AS2_ACLBLIBL_02506:0.0301627,(KBS0714_MOLHKGIG_00450:0.00359771,(SA211_MHAAABBN_00171:5e-09,TT9_LFPAFLNI_00453:0.00547633)0.666:0.0110364)0.865:0.0127847)1:0.127309);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001682_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001682_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..beb20bf877ed5c33a8924b4e9bd619abbe1738ec
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001682_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02379:0.25529,(AS2_ACLBLIBL_02507:0.102416,(KBS0714_MOLHKGIG_00449:0.0164214,(SA211_MHAAABBN_00170:0.0108052,TT9_LFPAFLNI_00452:5e-09)0.898:0.0352595)0.975:0.163126)1:0.25529);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001683_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001683_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..920f7af09c9d2c3357a0e863662d731c1bcd190f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001683_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02381:0.154346,(AS2_ACLBLIBL_02510:0.114092,(TT9_LFPAFLNI_00450:0.0205002,(KBS0714_MOLHKGIG_00447:0.00372925,SA211_MHAAABBN_00168:0.0112091)0.716:0.00592164)0.994:0.115361)1:0.154346);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001685_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001685_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3f6c662fb500c8d2d387028b8225562a2bdf345c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001685_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02383:0.204411,(AS2_ACLBLIBL_02512:0.149794,(TT9_LFPAFLNI_00448:5e-09,(KBS0714_MOLHKGIG_00445:0.00482842,SA211_MHAAABBN_00166:5e-09)0.876:0.00970281)0.915:0.0781073)1:0.204411);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001686_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001686_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90bde4f7ef7a9dcd8a755ff287a8fa8790a54f25
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001686_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02384:0.0525817,(AS2_ACLBLIBL_02513:0.027118,(SA211_MHAAABBN_00165:0.00685451,(TT9_LFPAFLNI_00447:0.00668959,KBS0714_MOLHKGIG_00444:0.00211902)0.05:0.00204191)1:0.0616486)1:0.0525817);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001687_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001687_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6931cb1c3b2eb615018e2bfcfc28aa018781c595
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001687_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02385:0.179844,(AS2_ACLBLIBL_02514:0.107597,(TT9_LFPAFLNI_00446:5e-09,(KBS0714_MOLHKGIG_00443:0.00715049,SA211_MHAAABBN_00164:0.00720083)0.818:0.00727021)0.871:0.0488971)1:0.179844);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001689_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001689_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..01f9203fc4881ee8af41e0dd147abdf6a1fdf087
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001689_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02387:0.0810846,(AS2_ACLBLIBL_02516:0.267819,(KBS0714_MOLHKGIG_00441:0.00640675,(SA211_MHAAABBN_00162:0.0105738,TT9_LFPAFLNI_00444:0.00619498)0.46:0.00204138)1:0.142398)1:0.0810846);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001690_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001690_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6e3b402653924384cd63015aa599c35cc54c5cc5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001690_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02388:0.0227878,(AS2_ACLBLIBL_02517:0.126108,(KBS0714_MOLHKGIG_00440:0.00740185,(SA211_MHAAABBN_00161:0.00192823,TT9_LFPAFLNI_00443:0.00171352)0.382:0.00370929)0.999:0.0595771)1:0.0227878);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001696_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001696_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cd49a1da0322bc27d45873e78786d6c9fb5e8fba
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001696_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02394:0.0135784,(AS2_ACLBLIBL_02523:0.0121653,((KBS0714_MOLHKGIG_00434:0,TT9_LFPAFLNI_00437:0):5e-09,SA211_MHAAABBN_00155:0.00336282):0.0085108):0.0135784);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001698_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001698_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0299e2124232095009e57ff28df97e40027c6a5c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001698_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02396:0.33213,(AS2_ACLBLIBL_02525:0.139133,(KBS0714_MOLHKGIG_00432:0.027396,(SA211_MHAAABBN_00153:0.0242718,TT9_LFPAFLNI_00435:0.0172785)0.919:0.0348748)0.999:0.339221)1:0.33213);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001699_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001699_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c48b69cb0ae4b9b937e1ce760ca63bab958d1c47
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001699_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02397:0.213988,(AS2_ACLBLIBL_02527:0.449009,(SA211_MHAAABBN_00151:0.00675705,(TT9_LFPAFLNI_00433:5e-09,KBS0714_MOLHKGIG_00430:0.009698)0.632:0.00313046)0.999:0.352271)1:0.213988);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001700_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001700_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3961adc0433d5878241eea9b61a6da01d2890d5e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001700_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02398:0.112954,(AS2_ACLBLIBL_02528:0.136932,(TT9_LFPAFLNI_00432:5e-09,(SA211_MHAAABBN_00150:0.0069044,KBS0714_MOLHKGIG_00429:0.0022888)0.516:0.00456861)1:0.233088)1:0.112954);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001702_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001702_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5f794d1fa5a5c0cc30eb0f375b35afad5ee7e1b7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001702_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02400:0.00842439,(AS2_ACLBLIBL_02530:0.0908731,(KBS0714_MOLHKGIG_00427:5e-09,(SA211_MHAAABBN_00148:0.011028,TT9_LFPAFLNI_00430:0.00272819)0.444:0.00274852)0.534:0.0114716)1:0.00842439);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001703_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001703_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b876b6b54437520167840e94aebc4c65e563809f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001703_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02401:0.0928477,(AS2_ACLBLIBL_02531:0.0587433,(TT9_LFPAFLNI_00429:0.00327267,(KBS0714_MOLHKGIG_00426:5e-09,SA211_MHAAABBN_00147:0.00328123)0.752:5e-09)0.939:0.0371145)1:0.0928477);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001705_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001705_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..71e6c10ca6cfa16c010c1ba318cf4fcb277f2875
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001705_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02403:0.151936,(AS2_ACLBLIBL_02533:0.0592178,(TT9_LFPAFLNI_00427:0.00441127,(KBS0714_MOLHKGIG_00424:0.00408943,SA211_MHAAABBN_00145:0.00197747)0.268:0.00229004)0.957:0.0288583)1:0.151936);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001706_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001706_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7abbfdc1a7bc8bba738291664ae6d4a62b9b3939
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001706_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02406:0.0812052,(AS2_ACLBLIBL_02536:0.0238784,(KBS0714_MOLHKGIG_00422:0.00310088,(SA211_MHAAABBN_00143:5e-09,TT9_LFPAFLNI_00425:0.00922647)0.772:0.00302932)0.972:0.0362143)1:0.0812052);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001707_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001707_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d29bd0ed409cd9efa45ce876d36fc90d9c7fe722
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001707_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00761:2.5e-09,(AS2_ACLBLIBL_02537:0.656441,((KBS0714_MOLHKGIG_02019:0,SA211_MHAAABBN_01728:0):0.413465,TT9_LFPAFLNI_01956:0.0248178):0.0150431):2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001708_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001708_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd08ad76fc31229830b8f8df8316a10c884dda8a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001708_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02407:0.00835816,(TT9_LFPAFLNI_00424:0.0164763,(SA211_MHAAABBN_00142:0.00985731,(AS2_ACLBLIBL_02538:0.0577379,KBS0714_MOLHKGIG_00421:0.00327314)0.763:5e-09)0.75:0.00328209)1:0.00835816);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001712_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001712_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..44cf0bab5b9fb975347b41c6ecb71892ab51c740
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001712_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02412:0.115753,(AS2_ACLBLIBL_02544:0.0268444,((KBS0714_MOLHKGIG_00416:0,SA211_MHAAABBN_00136:0):5e-09,TT9_LFPAFLNI_00419:0.0110267):0.0266166):0.115753);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001713_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001713_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..aea65a86e960321b08940e3d7195f61c3364e722
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001713_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02413:0.0621583,(AS2_ACLBLIBL_02545:0.0101107,(KBS0714_MOLHKGIG_00414:5e-09,(SA211_MHAAABBN_00134:0,TT9_LFPAFLNI_00417:0):0.00694998):0.0257116):0.0621583);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001716_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001716_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..03df6450bb908589460947544785e5131ff1dc02
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001716_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02417:0.0460942,(AS2_ACLBLIBL_02549:0.0345054,(KBS0714_MOLHKGIG_00410:0.0247858,(SA211_MHAAABBN_00130:0.0162919,TT9_LFPAFLNI_00413:0.0113551)0.954:0.0112262)0.978:0.0169501)1:0.0460942);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001718_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001718_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..40459846c5f40fcf7ff644a99d0a90470d612b66
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001718_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02419:0.204415,(AS2_ACLBLIBL_02551:0.0083951,(KBS0714_MOLHKGIG_00405:0.00921262,(SA211_MHAAABBN_00128:0.00915356,TT9_LFPAFLNI_00411:0.0101686)0.276:0.00526961)0.91:0.020797)1:0.204415);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001719_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001719_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b095bdf0e4e7719c95505e81b0c2e7d28db9ecfb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001719_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02420:0.141825,(AS2_ACLBLIBL_02552:0.0273699,(SA211_MHAAABBN_00127:0.0102658,(KBS0714_MOLHKGIG_00404:0.00499959,TT9_LFPAFLNI_00410:0.00503133)0.782:0.00479542)0.879:0.0242162)1:0.141825);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001720_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001720_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..48319c7b9f534ceabbd529658eb12badf436a60f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001720_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02422:0.0589014,(AS2_ACLBLIBL_02553:0.0256104,(SA211_MHAAABBN_00126:0.0122199,(KBS0714_MOLHKGIG_00403:0.00295601,TT9_LFPAFLNI_00409:0.00895604)0.867:0.00477)0.704:0.0155248)1:0.0589014);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001721_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001721_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bc4e34f1fd197cabc9ed7e918ccb3a264f869458
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001721_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02425:0.0524182,(AS2_ACLBLIBL_02556:0.0132821,(KBS0714_MOLHKGIG_00401:0.0121017,(SA211_MHAAABBN_00125:5e-09,TT9_LFPAFLNI_00407:0.00513094)0.982:0.0159035)0.955:0.0164874)1:0.0524182);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001723_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001723_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..22a590f4d833c0c66f752333a7c5ef5d77321ed7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001723_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02429:0.0999565,(AS2_ACLBLIBL_02558:0.0267888,((KBS0714_MOLHKGIG_00399:0,SA211_MHAAABBN_00123:0):0.0104781,TT9_LFPAFLNI_00405:5e-09):0.0156839):0.0999565);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001727_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001727_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..46096dc0182d27914265940e50e97655df5f1319
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001727_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02434:0.0183342,(AS2_ACLBLIBL_02562:0.0270539,(KBS0714_MOLHKGIG_00394:0,SA211_MHAAABBN_00118:0,TT9_LFPAFLNI_00400:0):0.0452944):0.0183342);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001730_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001730_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..360643fb304eb8a0807816d9a8a2ca484f633cab
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001730_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02438:0.20037,(AS2_ACLBLIBL_02567:0.0556574,(SA211_MHAAABBN_00113:6e-09,(TT9_LFPAFLNI_00395:0.0163248,KBS0714_MOLHKGIG_00389:5e-09)0.043:0.00649164)0.996:0.0895037)1:0.20037);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001735_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001735_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9e90c0a37348e6c7dfb8e4f7f653ce4a46beb5d5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001735_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02445:0.001281,(AS2_ACLBLIBL_02573:0.0024683,(TT9_LFPAFLNI_00388:0.00281106,(KBS0714_MOLHKGIG_00382:0.0129726,SA211_MHAAABBN_00106:0.0175481)0.404:0.00254892)0.997:0.0227846)1:0.001281);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001738_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001738_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ab481586534ae5a2321bc2946a0937a1af5b541e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001738_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02448:0.0588534,(SA211_MHAAABBN_00103:0.0200855,(AS2_ACLBLIBL_02576:0.00278707,(KBS0714_MOLHKGIG_00379:0,TT9_LFPAFLNI_00385:0):0.00795429):0.00178112):0.0588534);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001739_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001739_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..cdeb0bd61b6c427a8401322c5ba106149e108d54
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001739_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02449:0.0162443,(AS2_ACLBLIBL_02590:0.00669037,(TT9_LFPAFLNI_00379:5e-09,(SA211_MHAAABBN_00088:0.0161208,KBS0714_MOLHKGIG_00372:0.00312876)0.771:0.00318915)0.849:0.00615025)1:0.0162443);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001740_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001740_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5c0e0614a1394dedfb50981bff8eca67b62fed8b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001740_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02450:0.0363576,(AS2_ACLBLIBL_02591:0.0129079,(TT9_LFPAFLNI_00378:0.00260443,(KBS0714_MOLHKGIG_00371:0.00761285,SA211_MHAAABBN_00087:0.00254446)0.749:0.00511714)0.883:0.0102059)1:0.0363576);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001741_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001741_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3c8d66586d9ceab0ed1105650e6ab8a1f7afe878
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001741_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02451:0.0582252,(AS2_ACLBLIBL_02592:0.0256818,(KBS0714_MOLHKGIG_00370:0.00691714,(SA211_MHAAABBN_00086:0.0034462,TT9_LFPAFLNI_00377:0.00345068)0.548:5e-09)0.993:0.0242029)1:0.0582252);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001743_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001743_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3933985471550828e1ceb5961f7263ca48a305c7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001743_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02455:0.0840796,(AS2_ACLBLIBL_02596:0.0317211,(KBS0714_MOLHKGIG_00365:0,SA211_MHAAABBN_00081:0,TT9_LFPAFLNI_00372:0):5e-09):0.0840796);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001745_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001745_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d7037c6dd718e53ca5483992482fc8633bfb9df3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001745_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02457:0.058657,(AS2_ACLBLIBL_02598:0.0377754,(TT9_LFPAFLNI_00370:0.00607536,(KBS0714_MOLHKGIG_00363:0.0107742,SA211_MHAAABBN_00079:0.00487052)0.177:0.00526884)0.995:0.0481287)1:0.058657);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001748_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001748_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3955d339c9ea039e9fce7696a6af1433ce595575
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001748_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02460:0.269529,(AS2_ACLBLIBL_02601:0.146072,(KBS0714_MOLHKGIG_00360:5e-09,(SA211_MHAAABBN_00076:0,TT9_LFPAFLNI_00367:0):0.0109082):0.180223):0.269529);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001753_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001753_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a1ab4010d51021dc61f5135afecc19c7154526b4
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001753_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02467:0.238864,(AS2_ACLBLIBL_02608:0.0660314,(KBS0714_MOLHKGIG_00353:5e-09,(SA211_MHAAABBN_00069:0,TT9_LFPAFLNI_00360:0):0.00886929):0.0485253):0.238864);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001754_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001754_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5aa347a9cc315eb2ecbf2caf5af8d4a2abd23a85
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001754_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02468:0.0738626,(AS2_ACLBLIBL_02609:0.0660878,(SA211_MHAAABBN_00068:0.00474973,(KBS0714_MOLHKGIG_00352:0.00934885,TT9_LFPAFLNI_00359:0.00888975)0.646:0.00461178)0.899:0.024209)1:0.0738626);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001755_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001755_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c58f0bd3da4a8013571f0f790f1677394e9fab4b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001755_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02469:0.24032,(AS2_ACLBLIBL_02610:0.0423944,(TT9_LFPAFLNI_00358:0.00803764,(KBS0714_MOLHKGIG_00351:5e-09,SA211_MHAAABBN_00067:0.00308335)0.757:0.0045546)0.998:0.0770851)1:0.24032);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001756_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001756_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..52a8618f68985e36c8a8a551aca2aaedf428e486
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001756_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02471:0.160577,(AS2_ACLBLIBL_02612:0.137911,(TT9_LFPAFLNI_00356:0.020416,(KBS0714_MOLHKGIG_00349:0.0248212,SA211_MHAAABBN_00065:0.0235509)0.291:0.00262184)0.999:0.106985)1:0.160577);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001758_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001758_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8a26902a0374bcb61d710c5ab8cf94a861151c13
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001758_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02475:0.0748785,(AS2_ACLBLIBL_02623:0.0714567,(TT9_LFPAFLNI_00353:5e-09,(KBS0714_MOLHKGIG_00346:0.00462917,SA211_MHAAABBN_00062:5e-09)0.474:0.0023102)0.974:0.0381849)1:0.0748785);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001766_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001766_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b3e16e16d533e9e35932fc9b018f3a1bdf9a0e62
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001766_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02488:0.0697254,(AS2_ACLBLIBL_02676:0.232839,(KBS0714_MOLHKGIG_00337:0.0453573,(SA211_MHAAABBN_00053:0.0155637,TT9_LFPAFLNI_00344:0.0259108)0.854:0.0229196)0.996:0.162581)1:0.0697254);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001767_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001767_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9a01af20b7f73693766516509c5a1802be18e818
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001767_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02492:0.674034,(AS2_ACLBLIBL_02680:0.304755,(KBS0714_MOLHKGIG_00335:0.0347382,(SA211_MHAAABBN_00051:5e-09,TT9_LFPAFLNI_00342:0.0142856)0.758:0.0244372)0.928:0.305267)1:0.674034);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001768_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001768_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f0badc881b4db47d29147634ac623a0e1fa56dd1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001768_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00735:0.0251802,KD337_NAFOICDF_00741:0.78908)0.695:0.002324,(SA211_MHAAABBN_01751:0.0110803,(KBS0714_MOLHKGIG_02045:0.00631454,TT9_LFPAFLNI_01979:0.0210076)0.823:0.00781843)0.695:0.002324);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001770_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001770_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bac45f5b5250b298d49797784e38dbb0bf340b0e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001770_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00006:0.0268881,(KBS0714_MOLHKGIG_00329:5e-09,(SA211_MHAAABBN_00045:0,TT9_LFPAFLNI_00336:0):0.00370812):0.0268881);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001773_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001773_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b606b9b3be11322aaaa45515fd351a19ef61f980
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001773_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00052:0.144873,(KBS0714_MOLHKGIG_00302:0.0270937,(SA211_MHAAABBN_00010:0.00487165,TT9_LFPAFLNI_00309:0.012239)0.938:0.0215382)1:0.144873);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001774_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001774_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f29d988d1debb9938dc6f5995436e8b64463e0f0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001774_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00068:0.0738731,(KBS0714_MOLHKGIG_00286:0.0306088,(SA211_MHAAABBN_02308:0.00552362,TT9_LFPAFLNI_00292:0.0182395)0.41:0.012383)1:0.0738731);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001778_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001778_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e2266804cf7a3bb8d38306cd64786489a3cd6ee2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001778_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00116:0.00801616,(KBS0714_MOLHKGIG_00253:0.00795651,(SA211_MHAAABBN_02265:0,TT9_LFPAFLNI_00253:0):5e-09):0.00801616);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001780_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001780_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..be135ec9a5acc67503db2dbed532ba7b1071be55
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001780_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00127:0.0221308,(KBS0714_MOLHKGIG_00243:0.012866,(SA211_MHAAABBN_02255:0.0104971,TT9_LFPAFLNI_00243:0.00555822)0.888:0.0121855)1:0.0221308);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001781_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001781_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..191147abc538fc1799c26f565baf9a088890df5b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001781_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00104:0.0992924,(AS2_ACLBLIBL_00142:0.195592,(AS2_ACLBLIBL_00807:0.667751,KBS0714_MOLHKGIG_02037:1.26705)0.971:0.393588)1:0.0992924);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001782_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001782_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bf9aaa0a150571d67229db47d62cf2b0d448effc
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001782_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00161:0.0808036,(TT9_LFPAFLNI_00220:0.011759,(KBS0714_MOLHKGIG_00219:0.00479442,SA211_MHAAABBN_02213:0.00315209)0.905:0.00958576)1:0.0808036);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001784_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001784_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0a475286239de2d94b6bd6e9ddd0dc549884225c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001784_tree.txt
@@ -0,0 +1 @@
+((KD337_NAFOICDF_00125:1.4767,KD337_NAFOICDF_00145:0.168752)0.931:0.0755875,(AS2_ACLBLIBL_00189:0.24008,KBS0714_MOLHKGIG_00200:0.277562)0.931:0.0755875);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001786_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001786_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3cd3500f7e8ef7f07aae09070a18e34ba3882bf9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001786_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_00196:0.151936,KD337_NAFOICDF_00597:1.25647)0.952:0.061966,(KD337_NAFOICDF_00148:0.00595341,TT9_LFPAFLNI_00199:0.0251452)0.952:0.061966);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001790_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001790_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fcb7d1dba236472149fbfe1d3fae79a658e7de55
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001790_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00239:0.129359,(KBS0714_MOLHKGIG_00145:0.0209469,(SA211_MHAAABBN_02159:0.0165108,TT9_LFPAFLNI_00153:0.0146855)0.877:0.00995121)1:0.129359);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001791_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001791_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fb571002aba4545f4a940728d6919ea56a4c35a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001791_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00253:0.149176,(KBS0714_MOLHKGIG_00132:5e-09,(SA211_MHAAABBN_02146:0,TT9_LFPAFLNI_00140:0):0.0113935):0.149176);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001792_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001792_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eea32d33fac0ad4089b911b6781274a2997a699d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001792_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00199:0.111706,(AS2_ACLBLIBL_00264:0.133958,(KBS0714_MOLHKGIG_00120:0.00256935,TT9_LFPAFLNI_00128:0.00506484)0.972:0.0677056)1:0.111706);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001793_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001793_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e2518fe515433fdb12b9893ba4204e99144ce14c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001793_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00306:0.0427416,(KBS0714_MOLHKGIG_00085:0.00430756,(SA211_MHAAABBN_02098:0.00663099,TT9_LFPAFLNI_00080:0.0167271)0.752:0.00182262)1:0.0427416);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001797_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001797_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ed7fcfbebdbd7ac4e6e5d9fde07ec953a6c4fe7d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001797_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00352:0.089077,(SA211_MHAAABBN_02064:0.0022917,(TT9_LFPAFLNI_00046:0.00420048,KBS0714_MOLHKGIG_00051:0.0171449)0.736:0.00846762)1:0.089077);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001798_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001798_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c3f9140aabf1e8ee607c5f7216f9cf087e6c31a2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001798_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00384:0.141712,((KBS0714_MOLHKGIG_00012:0,SA211_MHAAABBN_02030:0):0.00801419,TT9_LFPAFLNI_00012:0.0325161):0.141712);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001799_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001799_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..212d4b3b0296a3fc52d2bbc13d1783b1d6b37014
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001799_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02201:2.5e-09,(KBS0714_MOLHKGIG_00628:0.00385745,(AS2_ACLBLIBL_00400:0.00583169,TT9_LFPAFLNI_00603:0.00578527)0.217:5e-09)1:2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001800_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001800_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0d7c30be7c978ed65cf05b8e6a20feeeb5f7be83
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001800_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02200:0.001717,(TT9_LFPAFLNI_00602:5e-09,(KBS0714_MOLHKGIG_00629:0.00342244,AS2_ACLBLIBL_00401:0.0104257)0.776:5e-09)1:0.001717);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001804_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001804_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1f56192d50e929cb1e9dd6c35129be0d4b966743
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001804_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00408:0.0304936,(KBS0714_MOLHKGIG_02273:0.0327177,(AS2_ACLBLIBL_00459:0.0184395,SA211_MHAAABBN_01965:0.0159355)0.864:5e-09)1:0.0304936);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001810_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001810_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eda476bf586fd4f10092a19709536f1455affc32
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001810_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_02209:0,SA211_MHAAABBN_01922:0):0.0213025,(AS2_ACLBLIBL_00535:0.0662192,AS2_ACLBLIBL_02645:1.70397):0.0213025);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001814_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001814_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8465680229d55c9031b82838cbf14eacc51db351
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001814_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00553:0.151719,(SA211_MHAAABBN_01906:0.0505458,(KBS0714_MOLHKGIG_02193:0.0103073,TT9_LFPAFLNI_02137:0.00596558)0.684:0.00754822)1:0.151719);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001815_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001815_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3e15f591b735a25b3155df1b1a3ade854f1be3f6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001815_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00561:0.0435902,(KBS0714_MOLHKGIG_02188:0.0407981,(SA211_MHAAABBN_01902:0.0288515,TT9_LFPAFLNI_02133:0.00929493)0.831:0.0232406)1:0.0435902);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001816_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001816_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..eae285e04947f3266608242a58d45f7fae2433b3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001816_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00562:0.204926,(KBS0714_MOLHKGIG_02187:0.0083526,(SA211_MHAAABBN_01901:0.00765333,TT9_LFPAFLNI_02132:0.00383226)0.18:0.024316)1:0.204926);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001818_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001818_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d9829cbbdb6e67f80a6f85bf23d8e0f93e4838eb
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001818_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00602:0.588293,(TT9_LFPAFLNI_02098:5e-09,(SA211_MHAAABBN_01868:0.0155216,KBS0714_MOLHKGIG_02155:0.0404617)0.818:0.0110794)1:0.588293);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001820_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001820_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f814a1f33014a76a335a8239e1ad8d09d3a9f77b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001820_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00539:0.102377,(AS2_ACLBLIBL_00615:0.474046,(SA211_MHAAABBN_01859:0,TT9_LFPAFLNI_02089:0):0.134035):0.102377);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001824_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001824_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..43dabb763e26b316ba145f9426c40d68c507f7c2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001824_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00670:0.0273348,(TT9_LFPAFLNI_02048:0.00552179,(KBS0714_MOLHKGIG_02108:5e-09,SA211_MHAAABBN_01815:0.00519105)0.785:0.00507844)1:0.0273348);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001826_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001826_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0d5a291fa8d171d173825da99db9ed868d0fbbff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001826_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00679:0.232454,((KBS0714_MOLHKGIG_02100:0,SA211_MHAAABBN_01807:0):0.00580516,TT9_LFPAFLNI_02040:0.00174008):0.232454);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001827_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001827_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e94606ec80ce92abd52f6d0c109c4faa3e4be177
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001827_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00682:0.0984594,(KBS0714_MOLHKGIG_02097:0.0239725,(SA211_MHAAABBN_01804:5e-09,TT9_LFPAFLNI_02037:0.0023584)0.94:0.0199158)1:0.0984594);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001829_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001829_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..600e5043e4af62b79e7d25c6faa8db60ba12b118
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001829_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00604:0.011451,(KBS0714_MOLHKGIG_02090:0.0150939,(AS2_ACLBLIBL_00688:0.0228893,SA211_MHAAABBN_01798:0.00737926)0.893:0.0156264)1:0.011451);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001834_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001834_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c10584a85c7ee29cb3ff2b8182af3edce8059a2f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001834_tree.txt
@@ -0,0 +1 @@
+(KBS0714_MOLHKGIG_00625:0.0416767,(AS2_ACLBLIBL_00749:0.0240307,(AS2_ACLBLIBL_00734:5e-09,AS2_ACLBLIBL_00746:6e-09)0.988:5e-09)1:0.0416767);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001836_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001836_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..90ad18b7aa8e65173443881567617d8de48247df
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001836_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00766:0.299537,(SA211_MHAAABBN_01760:0.0233087,(TT9_LFPAFLNI_01988:0.082398,KBS0714_MOLHKGIG_02054:0.0238185)0.87:0.0725344)1:0.299537);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001837_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001837_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd47b799fc1ad027328fce53db3c859249d734a0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001837_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00772:0.100677,(KBS0714_MOLHKGIG_02044:0.0236287,(SA211_MHAAABBN_01750:0.0205259,TT9_LFPAFLNI_01978:0.00763499)0.417:0.00562599)1:0.100677);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001838_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001838_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b41843cad4777225b89b97ffcf15711eea822d57
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001838_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00788:0.00648112,(KBS0714_MOLHKGIG_02032:0.00636572,(SA211_MHAAABBN_01739:0.00520361,TT9_LFPAFLNI_01967:0.00830814)0.345:0.00193576)1:0.00648112);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001840_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001840_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fbd8f90518699d73ce23c3c4523aafe79e4430fd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001840_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00817:0.702002,(KBS0714_MOLHKGIG_01625:0.00608867,(TT9_LFPAFLNI_01554:0.0143552,SA211_MHAAABBN_01331:0.0345435)0.747:0.00826385)1:0.702002);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001841_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001841_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2536326c6e9cbd595cd748684d74b5ce9747966a
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001841_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00777:0.0520201,(AS2_ACLBLIBL_00844:0.160031,(SA211_MHAAABBN_01708:0.00592355,TT9_LFPAFLNI_01936:0.00504453)1:0.156863)1:0.0520201);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001842_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001842_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1ca70946996d4c7c46230f73bb9987ce4dd8b464
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001842_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00778:0.0960448,(AS2_ACLBLIBL_00845:0.197821,(SA211_MHAAABBN_01707:0,TT9_LFPAFLNI_01935:0):0.0938285):0.0960448);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001844_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001844_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1c7eaa109d4b1652201f55910b58bc6e64d9d776
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001844_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00785:0.096882,(AS2_ACLBLIBL_00848:0.303104,(SA211_MHAAABBN_01703:5e-09,TT9_LFPAFLNI_01931:0.00329337)0.995:0.129209)1:0.096882);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001846_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001846_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..022eeccac54ff887d915a602f38ce28cdac91e38
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001846_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00787:0.0358652,(AS2_ACLBLIBL_00850:0.0347342,(SA211_MHAAABBN_01701:0.00384942,TT9_LFPAFLNI_01929:5e-09)0.992:0.0498003)1:0.0358652);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001848_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001848_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4cb112f5f73b4423e2668e87832117b29e0af3a8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001848_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00790:0.142337,(TT9_LFPAFLNI_00737:1.40246,(AS2_ACLBLIBL_00853:0.0364337,SA211_MHAAABBN_01698:0.0702181)0.976:0.255926)1:0.142337);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001851_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001851_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ff8f70c8f373d1256861054981a02ecee6f93055
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001851_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00870:0.00324659,(KBS0714_MOLHKGIG_01987:0,SA211_MHAAABBN_01681:0,TT9_LFPAFLNI_01913:0):0.00324659);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001852_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001852_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..fe656cf59b6ccbb8a166baab81f4b5e91aaea741
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001852_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00881:0.0999535,(KBS0714_MOLHKGIG_01977:5e-09,(SA211_MHAAABBN_01670:0.0235363,TT9_LFPAFLNI_01902:5e-09)0.912:0.0491364)1:0.0999535);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001853_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001853_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..98bd81da05b0ed4c53bc534454660fd11c396780
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001853_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00892:0.0678055,(KBS0714_MOLHKGIG_01967:0,SA211_MHAAABBN_01661:0,TT9_LFPAFLNI_01893:0):0.0678055);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001855_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001855_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..58abea1aae07c99477bf9da2a7e6aa35ddbf6b40
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001855_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00841:0.00501088,(AS2_ACLBLIBL_00902:0.0226941,(SA211_MHAAABBN_01646:0.0101556,TT9_LFPAFLNI_01876:0.0117644)0.697:0.00399846)1:0.00501088);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001859_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001859_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a6943a85b9fe1f4358cdf5e8ac2f38761a6989c8
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001859_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00848:0.00268334,(AS2_ACLBLIBL_00916:0.42454,(KBS0714_MOLHKGIG_01946:0,TT9_LFPAFLNI_01865:0):5e-09):0.00268334);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001862_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001862_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ee77223bb55e892b7db6f46d32ae78e8c7fe8b28
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001862_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00945:0.221311,(SA211_MHAAABBN_01991:0.0162452,(KBS0714_MOLHKGIG_02298:0.0166363,TT9_LFPAFLNI_02239:5e-09)0.625:0.00721413)1:0.221311);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001863_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001863_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4159be78ab63e9445af23095dedbb2f024582bd6
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001863_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00961:0.133966,(KBS0714_MOLHKGIG_01898:0.0134004,(TT9_LFPAFLNI_01818:0.015715,SA211_MHAAABBN_01594:0.00514071)0.187:0.00746675)1:0.133966);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001864_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001864_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0531ae674056bf052930f44a08279f84f0ff541f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001864_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00963:0.0542453,((KBS0714_MOLHKGIG_01895:0,TT9_LFPAFLNI_01815:0):0.0125993,SA211_MHAAABBN_01591:0.00821275):0.0542453);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001865_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001865_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e3432885270a5cd34fdfa3a25d2baf6613db341d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001865_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_00966:0.0398734,(SA211_MHAAABBN_01588:0.0104213,(KBS0714_MOLHKGIG_01892:0.00774917,TT9_LFPAFLNI_01812:0.00385677)0.309:0.00522772)1:0.0398734);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001869_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001869_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0003433a00504f379f1e64b5a337a07b82025015
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001869_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01022:0.0720409,(TT9_LFPAFLNI_01766:0.00637661,(KBS0714_MOLHKGIG_01846:0.00321826,SA211_MHAAABBN_01542:5e-09)0.783:0.00975323)1:0.0720409);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001874_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001874_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3b6f833685bcba8e5364b231a98a9fc736ec9e72
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001874_tree.txt
@@ -0,0 +1 @@
+((AS2_ACLBLIBL_01224:1.55947,TT9_LFPAFLNI_00844:0.533803)0.837:0.0812231,(AS2_ACLBLIBL_02437:0.189949,SA211_MHAAABBN_00238:0.176507)0.837:0.0812231);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001876_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001876_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..41ced2184cb739573b8f9eaa761d28f73d27dd2d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001876_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01189:0.00542795,(AS2_ACLBLIBL_01285:0.0161948,(KBS0714_MOLHKGIG_01614:0.0107166,SA211_MHAAABBN_01324:0.00535844)0.748:0.00524755)1:0.00542795);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001877_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001877_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6a0f9770dd22bc0a993893ce0154932807b4e686
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001877_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00436:0.0100616,(AS2_ACLBLIBL_01324:0.977023,(SA211_MHAAABBN_01950:0.00419944,TT9_LFPAFLNI_02180:5e-09)0.516:0.0272194)1:0.0100616);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001878_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001878_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..be0a758006bcd066fde323c6f02d35793df9105b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001878_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01334:0.0122581,((KBS0714_MOLHKGIG_01588:0,TT9_LFPAFLNI_01515:0):0.00204354,SA211_MHAAABBN_01299:0.00198144):0.0122581);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001879_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001879_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..03db9270d7e9fc071377542d3231afc21dbe8fcf
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001879_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01336:0.0072449,(KBS0714_MOLHKGIG_01586:0,SA211_MHAAABBN_01297:0,TT9_LFPAFLNI_01513:0):0.0072449);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001881_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001881_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..846bc693884d167b6bf490a53a06b4fd7e0da81f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001881_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01411:0.0393981,((KBS0714_MOLHKGIG_01514:0,SA211_MHAAABBN_01223:0):0.0029276,TT9_LFPAFLNI_01441:0.00581936):0.0393981);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001884_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001884_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..21efa5adf8eaab216f77b0bdfb97504394a29c70
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001884_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01532:0.262192,(AS2_ACLBLIBL_01635:0.138453,(KBS0714_MOLHKGIG_01253:0.0251858,SA211_MHAAABBN_00972:0.0209957)0.996:0.133354)1:0.262192);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001885_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001885_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0da2449b226c7e6ace0cbe3f8308e34f53be2f3f
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001885_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01665:0.0640682,(KBS0714_MOLHKGIG_01223:5e-09,(SA211_MHAAABBN_00942:0.00945486,TT9_LFPAFLNI_01181:0.00468666)0.961:0.00949371)1:0.0640682);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001886_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001886_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..38706a7c3f3a8ea637bfa35549b1f80df8a13867
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001886_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01734:0.261638,(KBS0714_MOLHKGIG_01155:0,SA211_MHAAABBN_00874:0,TT9_LFPAFLNI_01105:0):0.261638);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001887_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001887_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ce5d56700810dc1b3388a165ac1e9adb3a693b33
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001887_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01781:0.0442945,(SA211_MHAAABBN_00831:5e-09,(KBS0714_MOLHKGIG_01112:5e-09,TT9_LFPAFLNI_01062:0.00239669)0.997:0.0120832)1:0.0442945);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001888_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001888_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2aaebec91a51bd9b7f28fafd1e6909d3289ef420
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001888_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01872:0.00533569,(SA211_MHAAABBN_00730:0.00425424,(TT9_LFPAFLNI_00960:0.0021249,KBS0714_MOLHKGIG_01016:0.00425621)0.362:5e-09)1:0.00533569);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001889_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001889_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6f7fa2d87317d1f485d81dead818844a411ab305
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001889_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01875:0.0155142,((KBS0714_MOLHKGIG_01013:0,TT9_LFPAFLNI_00956:0):5e-09,SA211_MHAAABBN_00727:5e-09):0.0155142);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001890_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001890_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d18153b0f9b73aff757b86a43b3763a273272c1e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001890_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_01879:0.014845,((KBS0714_MOLHKGIG_01010:0,SA211_MHAAABBN_00724:0):0.0325555,TT9_LFPAFLNI_00953:0.015914):0.014845);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001894_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001894_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..28fccecc822e2f00352eed1f41fafef0dc4e45e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001894_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02191:0.199839,(KBS0714_MOLHKGIG_00739:0.0170843,(SA211_MHAAABBN_00470:0.0280108,TT9_LFPAFLNI_00703:0.0494938)0.867:0.0247448)1:0.199839);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001895_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001895_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..aabec0193482081dcd2765fcfb569b758ad33a29
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001895_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02247:0.0426205,(KD337_NAFOICDF_02120:5e-09,(KD337_NAFOICDF_00402:0.829223,KD337_NAFOICDF_00715:1.07201)1:0.859699)1:0.0426205);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001898_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001898_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d33f83d8bd7a3abff3386292076453541887eee0
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001898_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02295:0.0648212,(KBS0714_MOLHKGIG_00667:0.0168698,(SA211_MHAAABBN_00404:0.00663332,TT9_LFPAFLNI_00637:0.00995014)0.805:0.00646428)1:0.0648212);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001901_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001901_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0cd7e4c7dd78ffb5eb48c2d1bca47eac63e8392c
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001901_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02300:0.0239704,(KBS0714_MOLHKGIG_00663:0.00185022,(SA211_MHAAABBN_00400:0,TT9_LFPAFLNI_00633:0):0.00185014):0.0239704);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001902_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001902_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..132f57a854296b37dd127b41f883c82e38c63659
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001902_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02317:0.139748,(TT9_LFPAFLNI_00616:5e-09,(KBS0714_MOLHKGIG_00646:0.00487873,SA211_MHAAABBN_00383:5e-09)0.856:0.00487328)1:0.139748);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001904_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001904_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ff20c507fdfba40154cf2739c5cf08d0dc84d3db
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001904_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02323:0.20574,(KBS0714_MOLHKGIG_01077:0,SA211_MHAAABBN_00796:0,TT9_LFPAFLNI_01026:0):0.20574);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001905_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001905_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9a5e00755b3e65b2b5142460f62902694973c0d3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001905_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02337:0,(AS2_ACLBLIBL_02342:0,AS2_ACLBLIBL_02640:0,AS2_ACLBLIBL_02651:0)1:0);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001906_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001906_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b13c2bf980ee254d1c5387c598ce009805592a23
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001906_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02352:0.134223,(TT9_LFPAFLNI_00582:0.0264608,(KBS0714_MOLHKGIG_00581:0.0447347,SA211_MHAAABBN_00314:0.023511)0.781:0.0246309)1:0.134223);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001909_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001909_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..6109640a83e2a9b2ee10b6ddb3a233c9c2d0aa9d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001909_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02357:0.00129775,((KBS0714_MOLHKGIG_00576:0,SA211_MHAAABBN_00308:0):5e-09,TT9_LFPAFLNI_00577:0.00259695):0.00129775);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001912_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001912_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7f9c448b12d8c6601a6d7acb505ccb9726470c98
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001912_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02298:0.216848,(AS2_ACLBLIBL_02416:0.180318,(SA211_MHAAABBN_00257:0.00416143,TT9_LFPAFLNI_00536:0.00974024)0.999:0.155853)1:0.216848);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001913_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001913_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5ca18c1e1e3c00527b0eb4305e5c0b453291c744
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001913_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02300:0.0448835,(TT9_LFPAFLNI_00534:0.0323077,(AS2_ACLBLIBL_02418:0.88003,SA211_MHAAABBN_00255:0.0338073)0.522:0.0381474)1:0.0448835);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001915_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001915_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8571ea1ab9d5edd7d7bcbfdac39cb076b1ac0a67
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001915_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02526:0.15968,(TT9_LFPAFLNI_00434:0.00476709,(SA211_MHAAABBN_00152:5e-09,KBS0714_MOLHKGIG_00431:0.0247376)0.67:0.00506667)1:0.15968);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001916_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001916_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..04540b78e9f52716ab5403568fcc07424839bc2e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001916_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02566:0.175046,((KBS0714_MOLHKGIG_00390:0,SA211_MHAAABBN_00114:0):5e-09,TT9_LFPAFLNI_00396:0.0067864):0.175046);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001917_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001917_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5c0ab3d25e5bdb6e79150a0d40172a35097e1f2b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001917_tree.txt
@@ -0,0 +1 @@
+(AS2_ACLBLIBL_02624:0.0582522,(TT9_LFPAFLNI_00352:0.00979276,(KBS0714_MOLHKGIG_00345:5e-09,SA211_MHAAABBN_00061:0.00154)0.988:0.0191623)1:0.0582522);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001921_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001921_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a9377f38a2e8260708bd2a815a47c88a97ac26ae
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001921_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00200:0.149204,(KBS0714_MOLHKGIG_00118:0.0221484,(SA211_MHAAABBN_02131:0,TT9_LFPAFLNI_00123:0):0.00469331):0.149204);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001922_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001922_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8d45a5b0c8748a5a41f7c4ac21f236123cb2407b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001922_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01469:0.728535,(TT9_LFPAFLNI_00168:0.00654107,(SA211_MHAAABBN_02169:0.00137928,KBS0714_MOLHKGIG_00155:0.219475)0.845:0.0520782)1:0.728535);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001927_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001927_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..80b724ef0843dbd486e6cbc159b0b6cf84f55216
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001927_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02433:0.180562,(TT9_LFPAFLNI_00401:5e-09,(KBS0714_MOLHKGIG_00395:0.00283853,SA211_MHAAABBN_00119:5e-09)0.815:0.00568801)1:0.180562);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001931_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001931_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..9c5433c5116b1f31e8773c1a65487589e5e098e9
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001931_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02259:0.138812,(KBS0714_MOLHKGIG_00569:0.0145181,(SA211_MHAAABBN_00293:0.0439482,TT9_LFPAFLNI_00571:0.027696)0.922:0.0262696)1:0.138812);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001933_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001933_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a494e7e817aa5d17878df2fb4a8835bc86c6cd37
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001933_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02185:0.00962217,(SA211_MHAAABBN_00377:0.00959159,(KBS0714_MOLHKGIG_00640:0.270215,TT9_LFPAFLNI_00609:0.0250644)0.669:0.00463979)1:0.00962217);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001936_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001936_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..34de25a6e890f5b19fcec9fd175a327e144dd329
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001936_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01971:0.121472,(TT9_LFPAFLNI_00817:0.00401878,(KBS0714_MOLHKGIG_00858:0.00560126,SA211_MHAAABBN_00580:0.00973442)0.411:5e-09)1:0.121472);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001937_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001937_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..063ead443bcdb727be6e27d85f97750a9027895e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001937_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01881:0.23727,(SA211_MHAAABBN_00671:5e-09,(KBS0714_MOLHKGIG_00958:0.0017939,TT9_LFPAFLNI_00904:0.0162467)0.709:0.00360715)1:0.23727);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001940_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001940_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e14c85627c55e30fb1572a0e6dc154c11fc7a561
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001940_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_02229:0.0260795,(SA211_MHAAABBN_00786:5e-09,(KBS0714_MOLHKGIG_01067:0.0102006,TT9_LFPAFLNI_01014:5e-09)0.914:0.0102305)1:0.0260795);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001941_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001941_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..d7c0cb749d084621d7c97b572a7dd0887c53072b
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001941_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01674:0.103268,(KBS0714_MOLHKGIG_01111:5e-09,(TT9_LFPAFLNI_01061:0.0153789,SA211_MHAAABBN_00830:0.00368084)0.644:0.00743056)1:0.103268);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001942_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001942_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0ab02f8f79bbda0acc0f75a3bf805c03f9ccc9bd
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001942_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01641:0.238171,(KBS0714_MOLHKGIG_01145:0.0179323,(SA211_MHAAABBN_00864:0,TT9_LFPAFLNI_01095:0):0.0451699):0.238171);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001944_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001944_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2263628b40d7409d123f8926fe04008883ed6caa
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001944_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01573:0.105461,(SA211_MHAAABBN_00931:0.00772068,(KBS0714_MOLHKGIG_01212:0.0110905,TT9_LFPAFLNI_01169:0.00365838)0.748:0.003299)1:0.105461);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001945_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001945_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..20a29a670a7d57b99b580dc5c3ec27f104fc0b61
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001945_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00710:0.0844762,((KBS0714_MOLHKGIG_01290:0,SA211_MHAAABBN_01009:0):0.0172337,TT9_LFPAFLNI_01248:5e-09):0.0844762);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001946_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001946_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e65430eb0ba6caaab9ec24a7efe206b055bcb532
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001946_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01482:0.278687,((KBS0714_MOLHKGIG_01306:0,SA211_MHAAABBN_01029:0):5e-09,TT9_LFPAFLNI_01264:0.0144057):0.278687);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001950_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001950_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..498e92c21d4052c64e3fd430c76ec7e97bf03ab3
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001950_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01397:0.0770026,(TT9_LFPAFLNI_01359:0.0018269,(KBS0714_MOLHKGIG_01409:0.0150234,SA211_MHAAABBN_01139:0.00412576)0.529:0.00248819)1:0.0770026);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001952_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001952_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f70c01efb044f01970e6e00ffbd2449e2b073355
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001952_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01395:0.215731,(SA211_MHAAABBN_01141:5e-09,(KBS0714_MOLHKGIG_01411:0.00423398,TT9_LFPAFLNI_01361:5e-09)0.869:0.0200578)1:0.215731);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001953_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001953_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..dc9a31f9a43e84ae2003fe7598588261de44850e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001953_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01358:0.341374,(SA211_MHAAABBN_01177:0.0166517,(KBS0714_MOLHKGIG_01445:0.0154293,TT9_LFPAFLNI_01395:0.0233433)0.776:0.0154126)1:0.341374);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001956_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001956_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..46c3d6ba7b67cfd28f88ff6cbf28aaca5f19bd05
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001956_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_01476:0,SA211_MHAAABBN_01208:0,TT9_LFPAFLNI_01426:0):0.00434408,KD337_NAFOICDF_01326:0.00434408);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001957_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001957_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4ff790312fc028e2179530231f5fd5dc35a6869d
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001957_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_01477:0,SA211_MHAAABBN_01209:0,TT9_LFPAFLNI_01427:0):0.0105616,KD337_NAFOICDF_01325:0.0105616);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001958_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001958_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c6844c55d94016787b95cab36feebb074faa7dd7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001958_tree.txt
@@ -0,0 +1 @@
+(KBS0714_MOLHKGIG_01506:0.00568268,(KD337_NAFOICDF_00640:0.28543,(KD337_NAFOICDF_01746:0,KD337_NAFOICDF_02236:0):0.0452359):0.00568268);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001964_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001964_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..3f9489d6995d5e40ebdf0751f5a9554eecf2545e
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001964_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00883:0.0630811,(KBS0714_MOLHKGIG_01912:0.00994707,(SA211_MHAAABBN_01608:0.00201426,TT9_LFPAFLNI_01832:0.00255837)0.888:0.0114792)1:0.0630811);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001969_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001969_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..880a30154c6bd9faf60c240c5e0cb34c950dacff
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001969_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00797:0.164456,((KBS0714_MOLHKGIG_01996:0,SA211_MHAAABBN_01690:0):0.0106102,TT9_LFPAFLNI_01922:0.0136929):0.164456);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001973_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001973_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..295425369b898bacc58b583286a943dba8262fe1
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001973_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00731:0.118255,(KBS0714_MOLHKGIG_02049:0.0024427,(TT9_LFPAFLNI_01983:5e-09,SA211_MHAAABBN_01755:0.00726801)0.165:0.00479291)1:0.118255);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001974_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001974_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2b63dc783107f6781763bb3a2cccf77b23cc6eb5
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001974_tree.txt
@@ -0,0 +1 @@
+(KBS0714_MOLHKGIG_02062:2.5e-09,(KD337_NAFOICDF_02222:0.00623576,(KD337_NAFOICDF_02426:0.971759,KD337_NAFOICDF_02440:1.62407)0.915:0.323516)1:2.5e-09);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001975_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001975_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..dbb8be13d53ef715394446a467ea22f8bd8b66fe
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001975_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00573:0.0107836,(KBS0714_MOLHKGIG_02124:5e-09,(SA211_MHAAABBN_01832:0.00529864,TT9_LFPAFLNI_02062:5e-09)0.85:0.00532696)1:0.0107836);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001976_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001976_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..57921c2e01505816cced146c44720b87669346a2
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001976_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00507:0.170778,(SA211_MHAAABBN_01885:0.0155755,(KBS0714_MOLHKGIG_02171:5e-09,TT9_LFPAFLNI_02116:0.00683372)0.723:0.0145263)1:0.170778);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001979_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001979_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..216ef626ec2ac26f9bd95e1b83b0582c72db7548
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001979_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_01229:0.193694,(KBS0714_MOLHKGIG_02224:0.00982965,(SA211_MHAAABBN_01939:0.00855702,TT9_LFPAFLNI_02162:0.00434455)0.672:0.00309558)1:0.193694);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001981_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001981_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..050bcc51a8b61c73728469148c10c235b667be06
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001981_tree.txt
@@ -0,0 +1 @@
+((KBS0714_MOLHKGIG_02300:0,SA211_MHAAABBN_01993:0,TT9_LFPAFLNI_02241:0):0.101546,KD337_NAFOICDF_00389:0.101546);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001982_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001982_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec5059cf77d7cd866424e388602a8a31290d46a7
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001982_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00310:0.107075,(KD337_NAFOICDF_01773:0.216174,(KD337_NAFOICDF_00409:1.24894,KD337_NAFOICDF_00655:0.634764)1:1.37521)1:0.107075);
\ No newline at end of file
diff --git a/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001985_tree.txt b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001985_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2f3d37a9cb37f11a4dc7373c889154fc1bd7bc43
--- /dev/null
+++ b/Biomanus/experiments/ablation/results/biomanus/bioagentbench/comparative-genomics_20260522_115630/orthofinder_output/results/Results_May22/Gene_Trees/OG0001985_tree.txt
@@ -0,0 +1 @@
+(KD337_NAFOICDF_00675:0.167866,(KD337_NAFOICDF_02226:0.307761,(KD337_NAFOICDF_00674:0.550358,KD337_NAFOICDF_02225:0.292006)0.916:0.199923)1:0.167866);
\ No newline at end of file