"""Push/pull experiment files through the skill's marimo scratchpad client. This helper does not launch experiments or retry execution. Model downloads remain remote. Transfers are ordinary notebook code, with no SSH or service. """ from __future__ import annotations import argparse import base64 import io import json import os from pathlib import Path import shutil import subprocess import sys import zipfile SKILL_REMOTE = (Path(os.environ.get("CODEX_HOME", str(Path.home() / ".codex"))) / "skills/molab-marimo/scripts/molab_remote.py") def execute(code, state_file, capture=False): command = [sys.executable, str(SKILL_REMOTE), "exec", "--state-file", state_file] return subprocess.run(command, input=code, text=True, capture_output=capture, check=True) def pull_archive(paths, destination, args): code = f'''import base64, io, zipfile from pathlib import Path _root = Path({args.remote_root!r}).resolve() _buffer = io.BytesIO() with zipfile.ZipFile(_buffer, "w", compression=zipfile.ZIP_DEFLATED) as _archive: for _name in {paths!r}: _path = _root / _name if _path.is_dir(): for _item in sorted(_path.rglob("*")): if _item.is_file(): _archive.write(_item, str(_item.relative_to(_root))) else: _archive.write(_path, _name) print("MOLAB_FILES_BEGIN", flush=True) _encoded = base64.b64encode(_buffer.getvalue()).decode("ascii") for _offset in range(0, len(_encoded), 32768): print(_encoded[_offset:_offset + 32768], flush=True) print("MOLAB_FILES_END", flush=True) ''' result = execute(code, args.state_file, capture=True) encoded = result.stdout.split("MOLAB_FILES_BEGIN\n", 1)[1].split("\nMOLAB_FILES_END", 1)[0] encoded = "".join(encoded.split()) destination.mkdir(parents=True, exist_ok=True) with zipfile.ZipFile(io.BytesIO(base64.b64decode(encoded))) as archive: archive.extractall(destination) print("Retrieved", len(archive.namelist()), "files into", destination, flush=True) def main(): parser = argparse.ArgumentParser() parser.add_argument("--state-file", default="work/molab-state.json") parser.add_argument("--remote-root", default="molab_runs/resource_planning") commands = parser.add_subparsers(dest="command", required=True) push = commands.add_parser("push") push.add_argument("paths", nargs="+") pull = commands.add_parser("pull") pull.add_argument("paths", nargs="+") pull.add_argument("--destination", default="work/remote") pull_jsonl = commands.add_parser("pull-jsonl") pull_jsonl.add_argument("path") pull_jsonl.add_argument("--destination", default="work/remote") pull_jsonl.add_argument("--lines-per-part", type=int, default=64) args = parser.parse_args() if args.command == "push": buffer = io.BytesIO() with zipfile.ZipFile(buffer, "w", compression=zipfile.ZIP_DEFLATED) as archive: for raw_path in args.paths: path = Path(raw_path) if path.is_dir(): for item in sorted(path.rglob("*")): if item.is_file() and "__pycache__" not in item.parts: archive.write(item, str(item)) else: archive.write(path, str(path)) encoded = base64.b64encode(buffer.getvalue()).decode("ascii") code = f'''import base64, io, zipfile from pathlib import Path _root = Path({args.remote_root!r}).resolve() _root.mkdir(parents=True, exist_ok=True) with zipfile.ZipFile(io.BytesIO(base64.b64decode({encoded!r}))) as _archive: _archive.extractall(_root) print("Transferred", len(_archive.namelist()), "files to", str(_root), flush=True) ''' execute(code, args.state_file) elif args.command == "pull": pull_archive(args.paths, Path(args.destination), args) else: if args.lines_per_part < 1: raise ValueError("lines-per-part must be positive") part_root = str(Path(".transfer_parts") / args.path) code = f'''import json from pathlib import Path _root = Path({args.remote_root!r}).resolve() _parts = _root / {part_root!r} _parts.mkdir(parents=True, exist_ok=True) _paths = [] _part = None try: with (_root / {args.path!r}).open("rb") as _source: for _index, _line in enumerate(_source): if _index % {args.lines_per_part} == 0: if _part is not None: _part.close() _path = _parts / ("part%05d" % len(_paths)) _paths.append(str(_path.relative_to(_root))) _part = _path.open("wb") _part.write(_line) finally: if _part is not None: _part.close() print("MOLAB_PARTS " + json.dumps(_paths), flush=True) ''' result = execute(code, args.state_file, capture=True) paths = json.loads(result.stdout.split("MOLAB_PARTS ", 1)[1].splitlines()[0]) destination = Path(args.destination) for path in paths: pull_archive([path], destination, args) canonical = destination / args.path canonical.parent.mkdir(parents=True, exist_ok=True) with canonical.open("wb") as output: for path in paths: part = destination / path with part.open("rb") as source: shutil.copyfileobj(source, output) part.unlink() print("Retrieved complete JSONL into", canonical, flush=True) if __name__ == "__main__": main()