"""Bounded model generation, intended to run inside the Molab notebook. Each completed batch is appended to JSONL and can be resumed by sample id. Model weights and numerical work stay on the remote machine. """ from __future__ import annotations import argparse import importlib.metadata import json import os from pathlib import Path import subprocess import time def read_jsonl(path): with Path(path).open(encoding="utf-8") as handle: return [json.loads(line) for line in handle if line.strip()] def emit(event, **fields): print(json.dumps({"event": event, **fields}, ensure_ascii=False), flush=True) def package_versions(): result = {} for name in ("torch", "vllm", "transformers", "tokenizers", "huggingface_hub"): try: result[name] = importlib.metadata.version(name) except importlib.metadata.PackageNotFoundError: result[name] = None return result def split_response(text, thinking_enabled): if "" in text: reasoning, response = text.split("", 1) return response.strip(), reasoning.removeprefix("").strip() # The Qwen thinking template may already end with an opening think token. # Preserve an unfinished thought rather than claiming it is a final answer. return ("", text) if thinking_enabled else (text, None) class TransformersEngine: def __init__(self, args, sampling, thinking_enabled): import torch from transformers import AutoModelForImageTextToText, AutoTokenizer, LogitsProcessor self.torch = torch self.args = args self.sampling = sampling self.thinking_enabled = thinking_enabled self.tokenizer = AutoTokenizer.from_pretrained(args.model, cache_dir=args.cache_dir, revision=args.revision) self.tokenizer.padding_side = "left" self.model = AutoModelForImageTextToText.from_pretrained( args.model, dtype=torch.bfloat16, cache_dir=args.cache_dir, revision=args.revision, attn_implementation="sdpa").to("cuda").eval() self.model_revision = getattr(self.model.config, "_commit_hash", None) class PresencePenalty(LogitsProcessor): def __init__(self, prompt_length, penalty): self.prompt_length = prompt_length self.penalty = penalty self.seen = None def __call__(self, input_ids, scores): if self.seen is None: self.seen = torch.zeros_like(scores, dtype=torch.bool) if input_ids.shape[1] > self.prompt_length: self.seen.scatter_(1, input_ids[:, -1:], True) return scores - self.seen.to(scores.dtype) * self.penalty self.PresencePenalty = PresencePenalty def generate(self, batch): from transformers import LogitsProcessorList, set_seed if len({row["seed"] for row in batch}) != 1: raise ValueError("Transformers batches must use one shared seed.") set_seed(batch[0]["seed"]) template_kwargs = {"tokenize": False, "add_generation_prompt": True} if self.args.thinking != "default": template_kwargs["enable_thinking"] = self.args.thinking == "on" prompts = [self.tokenizer.apply_chat_template( [{"role": "user", "content": row["prompt"]}], **template_kwargs) for row in batch] inputs = self.tokenizer(prompts, padding=True, return_tensors="pt").to("cuda") prompt_length = inputs["input_ids"].shape[1] if prompt_length + self.args.max_tokens > self.args.max_model_len: raise ValueError("Prompt plus generation budget exceeds configured context.") started = time.perf_counter() with self.torch.inference_mode(): sequences = self.model.generate( **inputs, do_sample=True, max_new_tokens=self.args.max_tokens, temperature=self.sampling["temperature"], top_p=self.sampling["top_p"], top_k=self.sampling["top_k"], min_p=self.sampling["min_p"], repetition_penalty=self.sampling["repetition_penalty"], logits_processor=LogitsProcessorList([ self.PresencePenalty(prompt_length, self.sampling["presence_penalty"])])) elapsed = time.perf_counter() - started eos = self.model.generation_config.eos_token_id eos_ids = {eos} if isinstance(eos, int) else set(eos or []) outputs = [] for index, sequence in enumerate(sequences[:, prompt_length:]): tokens = sequence.tolist() eos_position = next((i for i, token in enumerate(tokens) if token in eos_ids), None) if eos_position is not None: tokens = tokens[:eos_position + 1] text = self.tokenizer.decode(tokens, skip_special_tokens=False) # Keep think delimiters, remove only response terminators. for eos_id in eos_ids: text = text.replace(self.tokenizer.decode([eos_id]), "") outputs.append({"raw_response": text, "prompt_tokens": int(inputs["attention_mask"][index].sum()), "output_tokens": len(tokens), "finish_reason": "stop" if eos_position is not None else "length", "stop_reason": tokens[-1] if eos_position is not None else None, "latency_seconds": elapsed, "seed_scope": "batch"}) return outputs, elapsed class VllmEngine: def __init__(self, args, sampling, thinking_enabled): from vllm import LLM self.args = args self.sampling = sampling self.llm = LLM(model=args.model, dtype="bfloat16", language_model_only=True, revision=args.revision, tokenizer_revision=args.revision, max_model_len=args.max_model_len, max_num_seqs=args.batch_size, gpu_memory_utilization=args.gpu_memory_utilization, enforce_eager=args.enforce_eager, download_dir=str(Path(args.cache_dir).resolve())) self.tokenizer = self.llm.get_tokenizer() engine_config = getattr(self.llm.llm_engine, "vllm_config", None) model_config = getattr(engine_config, "model_config", None) hf_config = getattr(model_config, "hf_config", None) self.model_revision = getattr(hf_config, "_commit_hash", None) def generate(self, batch): from vllm import SamplingParams prompts, settings = [], [] for row in batch: template_kwargs = {"tokenize": False, "add_generation_prompt": True} if self.args.thinking != "default": template_kwargs["enable_thinking"] = self.args.thinking == "on" prompts.append(self.tokenizer.apply_chat_template( [{"role": "user", "content": row["prompt"]}], **template_kwargs)) settings.append(SamplingParams(**self.sampling, seed=row["seed"], max_tokens=self.args.max_tokens, skip_special_tokens=False)) started = time.perf_counter() results = self.llm.generate(prompts, settings, use_tqdm=False) elapsed = time.perf_counter() - started outputs = [] for result in results: completion = result.outputs[0] metrics = getattr(result, "metrics", None) finished = getattr(metrics, "finished_time", None) arrival = getattr(metrics, "arrival_time", None) latency = finished - arrival if finished is not None and arrival is not None else elapsed outputs.append({"raw_response": completion.text, "prompt_tokens": len(result.prompt_token_ids), "output_tokens": len(completion.token_ids), "finish_reason": completion.finish_reason, "stop_reason": completion.stop_reason, "latency_seconds": latency, "seed_scope": "request"}) return outputs, elapsed def main(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True) parser.add_argument("--output", required=True) parser.add_argument("--model", required=True) parser.add_argument("--revision") parser.add_argument("--engine", choices=("transformers", "vllm"), default="transformers") parser.add_argument("--batch-size", type=int, default=8) parser.add_argument("--max-tokens", type=int, default=8192) parser.add_argument("--max-model-len", type=int, default=131072) parser.add_argument("--gpu-memory-utilization", type=float, default=0.85) parser.add_argument("--thinking", choices=("default", "on", "off"), default="default") parser.add_argument("--limit", type=int) parser.add_argument("--cache-dir", default="cache/huggingface") parser.add_argument("--enforce-eager", action="store_true") args = parser.parse_args() Path(args.cache_dir).mkdir(parents=True, exist_ok=True) os.environ.setdefault("HF_HOME", str(Path(args.cache_dir).resolve())) os.environ.setdefault("TOKENIZERS_PARALLELISM", "false") import torch if not torch.cuda.is_available(): raise RuntimeError("This experiment requires the Molab RTX PRO 6000 GPU.") output_path = Path(args.output) output_path.parent.mkdir(parents=True, exist_ok=True) completed = {row["id"] for row in read_jsonl(output_path)} if output_path.exists() else set() requests = [row for row in read_jsonl(args.input) if row["model"] == args.model and row["id"] not in completed] if args.limit is not None: requests = requests[:args.limit] if args.engine == "transformers": requests.sort(key=lambda row: row["seed"]) if not requests: emit("nothing_pending", model=args.model, completed=len(completed)) return actual_thinking = args.thinking == "on" or (args.thinking == "default" and args.model != "Qwen/Qwen3.5-2B") started = time.time() metadata_path = output_path.with_suffix(output_path.suffix + ".runtime.json") attempt_metadata_path = output_path.with_suffix(output_path.suffix + f".runtime.{int(started * 1000)}.json") metadata = { "model": args.model, "packages": package_versions(), "args": vars(args), "engine_environment": {"VLLM_USE_FLASHINFER_SAMPLER": os.environ.get("VLLM_USE_FLASHINFER_SAMPLER")}, "started_unix": started, "pending_samples": len(requests), "thinking_enabled": actual_thinking, "completed_samples_before_run": len(completed), "dtype": "bfloat16", "hardware": {"cuda": torch.version.cuda, "device": torch.cuda.get_device_name(0), "total_memory_bytes": torch.cuda.get_device_properties(0).total_memory, "nvidia_smi": subprocess.run(["nvidia-smi"], capture_output=True, text=True).stdout}, "sampling": {"temperature": 1.0, "top_p": 0.95, "top_k": 20, "min_p": 0.0, "presence_penalty": 1.5, "repetition_penalty": 1.0}, "latency_definition": "vLLM finished_time minus arrival_time when exposed; otherwise batch wall time", "load_mode": "language_model_only" if args.engine == "vllm" else "conditional_generation_text_inputs_only", } if args.model == "Qwen/Qwen3.5-2B" and not actual_thinking: metadata["sampling"].update(temperature=1.0, top_p=1.0, presence_penalty=2.0) elif not actual_thinking: metadata["sampling"].update(temperature=0.7, top_p=0.8) metadata["sampling_profile"] = "official_model_mode" def save_metadata(): content = json.dumps(metadata, ensure_ascii=False, indent=2) metadata_path.write_text(content, encoding="utf-8") attempt_metadata_path.write_text(content, encoding="utf-8") save_metadata() emit("loading", model=args.model, samples=len(requests), hardware=metadata["hardware"]["device"]) load_started = time.perf_counter() engine_class = VllmEngine if args.engine == "vllm" else TransformersEngine engine = engine_class(args, metadata["sampling"], actual_thinking) metadata["model_revision"] = engine.model_revision if metadata["model_revision"] is None: from huggingface_hub import try_to_load_from_cache for cache_root in (Path(args.cache_dir), Path(args.cache_dir) / "hub"): cached_config = try_to_load_from_cache(args.model, "config.json", cache_dir=str(cache_root), revision=args.revision) if isinstance(cached_config, str) and "/snapshots/" in cached_config: metadata["model_revision"] = cached_config.split("/snapshots/", 1)[1].split("/", 1)[0] metadata["revision_source"] = "loaded config cache snapshot identifier" break metadata["decoding"] = {"skip_special_tokens": False, "preserve_think_delimiters": True} metadata["model_load_seconds"] = time.perf_counter() - load_started save_metadata() emit("loaded", model=args.model, load_seconds=metadata["model_load_seconds"]) generated = 0 output_tokens = 0 generation_started = time.perf_counter() with output_path.open("a", encoding="utf-8") as handle: offset = 0 while offset < len(requests): batch = requests[offset:offset + args.batch_size] if args.engine == "transformers": batch = [row for row in batch if row["seed"] == batch[0]["seed"]] emit("batch_started", model=args.model, completed=generated, batch_size=len(batch)) results, batch_seconds = engine.generate(batch) for row, result in zip(batch, results): response, reasoning = split_response(result["raw_response"], actual_thinking) record = {**row, **result, "response": response, "reasoning": reasoning, "engine": args.engine, "batch_seconds": batch_seconds, "thinking_mode": args.thinking, "thinking_enabled": actual_thinking, "max_tokens": args.max_tokens, "sampling_profile": metadata["sampling_profile"], "sampling": metadata["sampling"]} handle.write(json.dumps(record, ensure_ascii=False) + "\n") generated += 1 output_tokens += record["output_tokens"] handle.flush() os.fsync(handle.fileno()) metadata.update(generated_samples=generated, generated_tokens=output_tokens, generation_seconds=time.perf_counter() - generation_started, last_batch_seconds=batch_seconds, elapsed_seconds=time.time() - started) metadata["tokens_per_second"] = output_tokens / metadata["generation_seconds"] metadata["seconds_per_sample"] = metadata["generation_seconds"] / generated save_metadata() emit("batch_complete", model=args.model, completed=generated, total=len(requests), batch_seconds=batch_seconds, tokens_per_second=sum(result["output_tokens"] for result in results) / batch_seconds, tokens=[result["output_tokens"] for result in results], finish_reasons=[result["finish_reason"] for result in results]) offset += len(batch) metadata["completed_unix"] = time.time() save_metadata() emit("complete", model=args.model, generated_samples=generated, generation_seconds=metadata["generation_seconds"], output_tokens=output_tokens) if __name__ == "__main__": main()