Sample SampleName Tissue Ecotype Genotype Treatment Project TotalReads UniqueMappedRatio ReleaseDate ERX1946687 Timepoint 10 rosette leaf Col-0 -- Cold4C 3h* PRJEB19974 16422598 0.9458 2018/7/4 ERX1946688 Timepoint 11 rosette leaf Col-0 -- Cold4C 6h* PRJEB19974 17555521 0.9478 2018/7/4 ERX1946689 Timepoint 12 rosette leaf Col-0 -- Cold4C 9h* PRJEB19974 18629695 0.9573 2018/7/4 ERX1946691 Timepoint 14 rosette leaf Col-0 -- Cold4C 15h* PRJEB19974 18690296 0.9536 2018/7/4 ERX1946693 Timepoint 16 rosette leaf Col-0 -- Cold4C 21h* PRJEB19974 17787214 0.9588 2018/7/4 ERX1946694 Timepoint 17 rosette leaf Col-0 -- Cold4C 24h* PRJEB19974 24945068 0.9539 2018/7/4 ERX1946679 Timepoint 2 rosette leaf Col-0 -- -- PRJEB19974 20196602 0.9507 2018/7/4 ERX1946697 Timepoint 20 rosette leaf Col-0 -- Cold4C 78h* PRJEB19974 18530491 0.955 2018/7/4 ERX1946698 Timepoint 21 rosette leaf Col-0 -- Cold4C 81h* PRJEB19974 21076264 0.9554 2018/7/4 ERX1946699 Timepoint 22 rosette leaf Col-0 -- Cold4C 84h* PRJEB19974 18465676 0.9544 2018/7/4 ERX1946701 Timepoint 24 rosette leaf Col-0 -- Cold4C 90h* PRJEB19974 24066660 0.954 2018/7/4 ERX1946702 Timepoint 25 rosette leaf Col-0 -- Cold4C 93h* PRJEB19974 21368523 0.9559 2018/7/4 ERX1946703 Timepoint 26 rosette leaf Col-0 -- Cold4C 96h* PRJEB19974 21023364 0.9561 2018/7/4 ERX1946680 Timepoint 3 rosette leaf Col-0 -- -- PRJEB19974 18793638 0.9518 2018/7/4 ERX1946681 Timepoint 4 rosette leaf Col-0 -- -- PRJEB19974 15229651 0.9523 2018/7/4 ERX1946682 Timepoint 5 rosette leaf Col-0 -- -- PRJEB19974 18165504 0.9528 2018/7/4 ERX1946683 Timepoint 6 rosette leaf Col-0 -- -- PRJEB19974 16144975 0.9518 2018/7/4 ERX1946684 Timepoint 7 rosette leaf Col-0 -- -- PRJEB19974 24167416 0.9532 2018/7/4 ERX1946685 Timepoint 8 rosette leaf Col-0 -- -- PRJEB19974 16154048 0.954 2018/7/4 ERX1946686 Timepoint 9 rosette leaf Col-0 -- Mock PRJEB19974 16453985 0.9514 2018/7/4 ERX3430782 Col-0 leaf Col-0 wild type -- PRJEB33240 25517753 0.9162 2019/11/17 ERX3430786 mail1-1 (TDNA) leaf Col-0 mail1-1 -- PRJEB33240 26375316 0.9301 2019/11/17 ERX3430784 main-2 (TDNA) leaf Col-0 main-2 -- PRJEB33240 26153131 0.9278 2019/11/17 ERX3466595 At7 sequencing1 hypocotyl Col-0 -- -- PRJEB33589 21680724 0.87 2019/9/7 ERX3556914 r1dKV_rep1 leaf Col-0 rrs1-3 rrs1b-1* KV PRJEB34520 7222854 0.881 2019/10/2 ERX3556906 r1dmock_rep1 leaf Col-0 rrs1-3 rrs1b-1* mock PRJEB34520 5424594 0.85 2019/10/2 ERX534171 th_C_Rt root Col-0 -- Mock PRJEB6701 10820919 0.9366 2016/12/15 ERX534172 th_C_St shoot Col-0 -- Mock PRJEB6701 13626140 0.9056 2016/12/15 ERX534173 th_T_Rt root Col-0 -- cold PRJEB6701 8356957 0.9202 2016/12/15 ERX534174 th_T_St shoot Col-0 -- cold PRJEB6701 10251950 0.9251 2016/12/15 SRX335638 mutant control leaves Col-0 -- -- PRJNA215313 9005032 0.8613 2014/8/16 SRX335639 mutant+LPS leaves Col-0 -- -- PRJNA215313 15338622 0.8616 2014/8/16 SRX335640 wild type control leaves Col-0 wild type Mock PRJNA215313 6977575 0.8658 2014/8/16 SRX335653 wild type+LPS leaves Col-0 wild type LPS PRJNA215313 13412135 0.8858 2014/8/16 SRX384068 Arabidopsis thaliana Col-0, 0.25h MeJA leaves Col-0 wild type MeJA PRJNA224133 52613531 0.8452 2017/6/1 SRX384124 Arabidopsis thaliana Col-0, 0.25h SA leaves Col-0 wild type SA PRJNA224133 47568274 0.7494 2017/6/1 SRX384012 Arabidopsis thaliana Col-0, 0.25h mock leaves Col-0 wild type Mock PRJNA224133 47011550 0.828 2017/6/1 SRX384072 Arabidopsis thaliana Col-0, 0.5h MeJA leaves Col-0 wild type MeJA PRJNA224133 45629701 0.7716 2017/6/1 SRX384017 Arabidopsis thaliana Col-0, 0.5h mock leaves Col-0 wild type Mock PRJNA224133 43267377 0.7783 2017/6/1 SRX384008 Arabidopsis thaliana Col-0, 0h mock leaves Col-0 wild type -- PRJNA224133 29783995 0.8068 2017/6/1 SRX384080 Arabidopsis thaliana Col-0, 1.5h MeJA leaves Col-0 wild type MeJA PRJNA224133 43996461 0.874 2017/6/1 SRX384136 Arabidopsis thaliana Col-0, 1.5h SA leaves Col-0 wild type SA PRJNA224133 49788759 0.7789 2017/6/1 SRX384168 Arabidopsis thaliana Col-0, 10h SA leaves Col-0 wild type SA PRJNA224133 48465523 0.8716 2017/6/1 SRX384056 Arabidopsis thaliana Col-0, 10h mock leaves Col-0 wild type Mock PRJNA224133 51884448 0.8511 2017/6/1 SRX384120 Arabidopsis thaliana Col-0, 16h MeJA leaves Col-0 wild type MeJA PRJNA224133 46083271 0.8349 2017/6/1 SRX384064 Arabidopsis thaliana Col-0, 16h mock leaves Col-0 wild type Mock PRJNA224133 54404249 0.848 2017/6/1 SRX384076 Arabidopsis thaliana Col-0, 1h MeJA leaves Col-0 wild type MeJA PRJNA224133 24875789 0.808 2017/6/1 SRX384132 Arabidopsis thaliana Col-0, 1h SA leaves Col-0 wild type SA PRJNA224133 34203855 0.8051 2017/6/1 SRX384084 Arabidopsis thaliana Col-0, 2h MeJA leaves Col-0 wild type MeJA PRJNA224133 43911865 0.8195 2017/6/1 SRX384140 Arabidopsis thaliana Col-0, 2h SA leaves Col-0 wild type SA PRJNA224133 48899577 0.7531 2017/6/1 SRX384088 Arabidopsis thaliana Col-0, 3h MeJA leaves Col-0 wild type MeJA PRJNA224133 43793514 0.8152 2017/6/1 SRX384144 Arabidopsis thaliana Col-0, 3h SA leaves Col-0 wild type SA PRJNA224133 52881871 0.7733 2017/6/1 SRX384148 Arabidopsis thaliana Col-0, 4h SA leaves Col-0 wild type SA PRJNA224133 53157109 0.885 2017/6/1 SRX384036 Arabidopsis thaliana Col-0, 4h mock leaves Col-0 wild type Mock PRJNA224133 47569789 0.7999 2017/6/1 SRX384152 Arabidopsis thaliana Col-0, 5h SA leaves Col-0 wild type SA PRJNA224133 49397407 0.7811 2017/6/1 SRX384040 Arabidopsis thaliana Col-0, 5h mock leaves Col-0 wild type Mock PRJNA224133 51959032 0.8492 2017/6/1 SRX384044 Arabidopsis thaliana Col-0, 6h mock leaves Col-0 wild type Mock PRJNA224133 53246162 0.711 2017/6/1 SRX384160 Arabidopsis thaliana Col-0, 7h SA leaves Col-0 wild type SA PRJNA224133 48785763 0.7814 2017/6/1 SRX384048 Arabidopsis thaliana Col-0, 7h mock leaves Col-0 wild type Mock PRJNA224133 48236472 0.8721 2017/6/1 SRX384052 Arabidopsis thaliana Col-0, 8h mock leaves Col-0 wild type Mock PRJNA224133 53184558 0.8029 2017/6/1 SRX377505 RNA-Seq_replicate_1 aerial seedling Col-0 Seq_mutant -- PRJNA227546 31475016 0.8095 2014/8/8 SRX485653 RNA-Seq of Arabidopsis thaliana roots ( 10d +Pi ) root Col-0 -- Mock PRJNA241054 51396099 0.8779 2015/7/30 SRX485655 RNA-Seq of Arabidopsis thaliana roots ( 10d -Pi ) root Col-0 -- Pi starvation PRJNA241054 42235305 0.7558 2015/7/30 SRX2483014 Arabidopsis thaliana Col-0 GIO12 transcriptome -- Col-0 GIO12 -- PRJNA265480 18479687 0.9487 2017/1/10 SRX2482993 Arabidopsis thaliana Col-0 gio11/12 transcriptome -- Col-0 gio11/12 -- PRJNA265481 19212377 0.9485 2017/1/10 SRX2482983 Arabidopsis thaliana Col-0 wild-type transcriptome -- Col-0 wild type -- PRJNA265482 24959949 0.9175 2017/1/10 SRX2483001 Arabidopsis thaliana Col-0 wrkyA mutant transcriptome -- Col-0 wrkyA mutant -- PRJNA265492 19709729 0.9447 2017/1/10 SRX799490 ga1 max1_0 min mock seedlings Col-0 ga1 max1 Mock PRJNA266229 33400237 0.8641 2017/10/6 SRX799517 ga1 max1_120 min GA seedlings Col-0 ga1 max1 120 min GA PRJNA266229 43014008 0.868 2017/10/6 SRX799523 ga1 max1_120 min GA + GR24 seedlings Col-0 ga1 max1 120 min GA + GR24 PRJNA266229 36936407 0.8919 2017/10/6 SRX799520 ga1 max1_120 min GR24 seedlings Col-0 ga1 max1 120 min GR24 PRJNA266229 36768276 0.8856 2017/10/6 SRX799488 ga1 max1_120 min mock seedlings Col-0 ga1 max1 Mock PRJNA266229 27567929 0.8487 2017/10/5 SRX799496 ga1 max1_30 min GA seedlings Col-0 ga1 max1 30 min GA PRJNA266229 30292716 0.8615 2017/10/6 SRX799502 ga1 max1_30 min GA + GR24 seedlings Col-0 ga1 max1 30 min GA + GR24 PRJNA266229 34371953 0.8111 2017/10/6 SRX799499 ga1 max1_30 min GR24 seedlings Col-0 ga1 max1 30 min GR24 PRJNA266229 31449248 0.8581 2017/10/6 SRX799493 ga1 max1_30 min mock seedlings Col-0 ga1 max1 acetone 0.05 % (v/v) and ethanol 0.1 % (v/v) PRJNA266229 32556506 0.863 2017/10/6 SRX799508 ga1 max1_60 min GA seedlings Col-0 ga1 max1 60 min GA PRJNA266229 29369310 0.8461 2017/10/6 SRX799514 ga1 max1_60 min GA + GR24 seedlings Col-0 ga1 max1 60 min GA + GR24 PRJNA266229 31959474 0.8653 2017/10/6 SRX799511 ga1 max1_60 min GR24 seedlings Col-0 ga1 max1 60 min GR24 PRJNA266229 37845867 0.8745 2017/10/6 SRX799505 ga1 max1_60 min mock seedlings Col-0 ga1 max1 Mock PRJNA266229 36731805 0.844 2017/10/6 SRX1034780 Arabidopsis thaliana shoot apical meristem at 10 day after germination apical shoot meristem Col-0 -- -- PRJNA268115 42225694 0.8253 2015/7/20 SRX1034786 Arabidopsis thaliana shoot apical meristem at 11 day after germination apical shoot meristem Col-0 -- -- PRJNA268115 55460120 0.843 2015/7/20 SRX1068202 Arabidopsis thaliana shoot apical meristem at 12 day after germination apical shoot meristem Col-0 -- -- PRJNA268115 49409102 0.8822 2015/7/22 SRX1034787 Arabidopsis thaliana shoot apical meristem at 13 day after germination apical shoot meristem Col-0 -- -- PRJNA268115 45238276 0.8295 2015/7/20 SRX1068195 Arabidopsis thaliana shoot apical meristem at 9 day after germination apical shoot meristem Col-0 -- -- PRJNA268115 39417774 0.7647 2015/7/20 SRX860911 Control (H2O) cultured cell Col-0 -- Mock PRJNA273982 48441978 0.9184 2015/5/31 SRX867277 RNA-seq of WT anthers stage 4-7 anther Col-0 wild type -- PRJNA274726 10774840 0.9596 2015/3/1 SRX867282 RNA-seq of bhlh010 bhlh089 bhlh091 triple mutant anthers stage 4-7 anther Col-0 bhlh010 bhlh089 bhlh091 -- PRJNA274726 17556116 0.9716 2015/3/1 SRX867280 RNA-seq of bhlh010 bhlh089 double mutant anthers stage 4-7 anther Col-0 bhlh010 bhlh089 -- PRJNA274726 16986800 0.97 2015/3/1 SRX957830 Control_H2O cultured cell Col-0 -- Mock PRJNA278518 20101973 0.9469 2016/3/17 SRX957882 Ln_100uM cultured cell Col-0 -- Ln_100uM PRJNA278518 19632980 0.9405 2016/3/17 SRX957878 Ln_10uM cultured cell Col-0 -- Ln_10uM PRJNA278518 21282373 0.9449 2016/3/17 SRX957885 NO2-Ln_10uM cultured cell Col-0 -- NO2-Ln_10uM PRJNA278518 21103349 0.936 2016/3/17 SRX957875 Vehicle_MeOH cultured cell Col-0 -- MeOH PRJNA278518 22853739 0.9512 2016/3/17 GSM1694254 Cambium stem soc1ful stem Col-0 soc1-ful -- PRJNA284739 51306570 0.9116 2016/5/22 SRX1059375 Ath-Col-0 seed Col-0 wild type 3 d oH incubation at 4 degrees Celsius, Hollowed by 24 h oH incubation at a 16-h light/8-h dark photoperiod PRJNA287039 16762968 0.8596 2020/4/15 SRX1059381 Ath-soar1-2 seed Col-0 soar1-2 3 d oH incubation at 4 degrees Celsius, Hollowed by 24 h oH incubation at a 16-h light/8-h dark photoperiod PRJNA287039 15688526 0.7536 2020/4/15 SRX1080999 Digital Gene Expression Profiling Analysis of Wild Type and PevD1 Transgenic Arabidopsis aerial seedling Col-0 -- -- PRJNA288899 22627359 0.8242 2015/8/8 SRX1150141 RNA-Seq of flowers from 28-day-old Arabidopsis thaliana ant ail6 double mutant: Sample AntAil6_Flowers inflorescence Col-0 ant ail6 double mutant -- PRJNA292478 51287641 0.8299 2016/8/10 GSM1864018 seedlings whole plant Col-0 wild type -- PRJNA294262 19731687 0.857 2018/8/23 SRX1520908 Arabidopsis iron sufficient and deficient leaves leaves Col-0 -- Mock PRJNA307616 10138543 0.9253 2017/4/12 SRX1671196 First pair leaves from Fe- deficient Arabidopsis leaves Col-0 -- He-deHicient PRJNA307616 12000000 0.9215 2017/4/12 SRX1671149 First pair leaves from Fe-sufficient Arabidopsis leaves Col-0 -- Mock PRJNA307616 11872698 0.9364 2017/4/12 SRX1671199 Second pair leaves from Fe-deficient Arabidopsis leaves Col-0 -- He-deHicient PRJNA307616 12272458 0.9375 2017/4/12 SRX1671203 Third pair leaves from Fe-deficient Arabidopsis leaves Col-0 -- He-deHicient PRJNA307616 11203644 0.9173 2017/4/12 SRX1671153 Third pair leaves from Fe-sufficient Arabidopsis leaves Col-0 -- Mock PRJNA307616 12040726 0.9227 2017/4/12 SRX1667997 Sample_R3-0 rep1 shoot apex Col-0 -- -- PRJNA311774 26473658 0.8258 2016/4/8 SRX1795774 Anthers of the mature flower (F.AN.ad) anther Col-0 -- -- PRJNA314076 23196621 0.8501 2016/8/26 SRX1795824 Anthers of the young flower (F.AN.y) anther Col-0 -- -- PRJNA314076 28651462 0.7765 2016/8/26 SRX1795967 Axis of the inflorescence (AX) Inflorescence axis Col-0 -- -- PRJNA314076 24331374 0.9242 2016/8/26 SRX1796153 Carpel of 6th and 7th flowers (POD.y6-7) carpels Col-0 -- -- PRJNA314076 30441905 0.8628 2016/8/26 SRX1795769 Carpels of the mature flower (F.CA.ad) carpels Col-0 -- -- PRJNA314076 23783835 0.8362 2016/8/26 SRX1795814 Carpels of the young flower (F.CA.y) carpels Col-0 -- -- PRJNA314076 25631418 0.8807 2016/8/26 SRX1796162 Dry Seeds (SD.d) seed Col-0 -- -- PRJNA314076 26702121 0.8825 2016/8/26 SRX1795852 Flower 1 (F1) flower Col-0 -- -- PRJNA314076 26478336 0.8691 2016/8/26 SRX1795861 Flower 2 (F2) flower Col-0 -- -- PRJNA314076 23804000 0.8444 2016/8/26 SRX1795871 Flower 3 (F3) flower Col-0 -- -- PRJNA314076 26110725 0.8933 2016/8/26 SRX1795883 Flower 4 (F4) flower Col-0 -- -- PRJNA314076 22742417 0.902 2016/8/26 SRX1795938 Flower 5 (F5) flower Col-0 -- -- PRJNA314076 24164042 0.8933 2016/8/26 SRX1795955 Flowers 12-14 (F12-14) flower Col-0 -- -- PRJNA314076 27220444 0.8969 2016/8/26 SRX1795956 Flowers 15-18 (F15-18) flower Col-0 -- -- PRJNA314076 29278619 0.7428 2016/8/26 SRX1795958 Flowers 19 and following (F19+) inflorescence Col-0 -- -- PRJNA314076 25449614 0.8895 2016/8/26 SRX1795952 Flowers 6-8 (F6-8) flower Col-0 -- -- PRJNA314076 24764437 0.8792 2016/8/26 SRX1795953 Flowers 9-11 (F9-11) flower Col-0 -- -- PRJNA314076 27036642 0.9191 2016/8/26 SRX1796178 Germinating seeds 1 (SD.g1) seed Col-0 -- -- PRJNA314076 38057923 0.7461 2016/8/26 SRX1796183 Germinating seeds 2 (SD.g2) seed Col-0 -- -- PRJNA314076 25250971 0.8338 2016/8/26 SRX1796187 Germinating seeds 3 (SD.g3) seed Col-0 -- -- PRJNA314076 25956210 0.8158 2016/8/26 SRX1795972 Internode (IN) internode Col-0 -- -- PRJNA314076 24020644 0.913 2016/8/26 SRX1795749 Leaf Lamina of the mature leaf (L.LAM.lg) leaf blade Col-0 -- -- PRJNA314076 26993753 0.7906 2016/8/26 SRX1795734 Leaf Lamina of the young leaf (L.LAM.y) leaf blade Col-0 -- -- PRJNA314076 23581358 0.8484 2016/8/26 SRX1795740 Leaf Lamina, intermediate 1 (L.LAM.i1) leaf blade Col-0 -- -- PRJNA314076 33340975 0.8804 2016/8/26 SRX1795744 Leaf Lamina, intermediate 2 (L.LAM.i2) leaf blade Col-0 -- -- PRJNA314076 25075794 0.8649 2016/8/26 SRX1795746 Leaf Petiole of the mature leaf (L.PET.lg) leaf petiole Col-0 -- -- PRJNA314076 22822490 0.8709 2016/8/26 SRX1795751 Leaf Petiole of the senescent leaf (L.PET.sn) leaf petiole Col-0 -- -- PRJNA314076 24932863 0.9117 2016/8/26 SRX1795729 Leaf Petiole of the young leaf (L.PET.y) leaf petiole Col-0 -- -- PRJNA314076 33202776 0.7502 2016/8/26 SRX1795738 Leaf Petiole, intermediate 1 (L.PET.i1) leaf petiole Col-0 -- -- PRJNA314076 24944580 0.8583 2016/8/26 SRX1795741 Leaf Petiole, intermediate 2 (L.PET.i2) leaf petiole Col-0 -- -- PRJNA314076 26103420 0.8679 2016/8/26 SRX1795748 Leaf Vein of the mature leaf (L.VN.lg) leaf midrib Col-0 -- -- PRJNA314076 25009652 0.8492 2016/8/26 SRX1795756 Leaf Vein of the senescent leaf (L.VN.sn) leaf midrib Col-0 -- -- PRJNA314076 26367808 0.8838 2016/8/26 SRX1795742 Leaf Vein, intermediate 2 (L.VN.i2) leaf midrib Col-0 -- -- PRJNA314076 26650575 0.8597 2016/8/26 SRX1795750 Leaf, mature (L.lg) leaves Col-0 -- -- PRJNA314076 25661062 0.9215 2016/8/26 SRX1795762 Opened Anthers (F.AN) anther Col-0 -- -- PRJNA314076 23453425 0.8407 2016/8/26 SRX1796089 Ovules from 6th and 7th flowers (OV.y6-7) ovule Col-0 -- -- PRJNA314076 27002720 0.8229 2016/8/26 SRX1795961 Pedicel (PED) pedicel Col-0 -- -- PRJNA314076 23954061 0.8902 2016/8/26 SRX1795791 Petals of the mature flower (F.PT.ad) petal Col-0 -- -- PRJNA314076 23989491 0.858 2016/8/26 SRX1796193 Pod of the senescent silique 1 (POD.sn1) pod Col-0 -- -- PRJNA314076 23922809 0.848 2016/8/26 SRX1795974 Pod of the silique 1 (POD1) pod Col-0 -- -- PRJNA314076 30255239 0.7598 2016/8/26 SRX1795997 Pod of the silique 5 (POD5) pod Col-0 -- -- PRJNA314076 27915428 0.7745 2016/8/26 SRX1796018 Pod of the silique 7 (POD7) pod Col-0 -- -- PRJNA314076 31230858 0.7513 2016/8/26 SRX1795720 Root (R ) root Col-0 -- -- PRJNA314076 25220183 0.8695 2016/8/26 SRX1795653 Root Apex (R.A) root apex Col-0 -- -- PRJNA314076 24777217 0.8984 2016/8/26 SRX1795648 Seedling Cotyledons (S.C) cotyledon Col-0 -- -- PRJNA314076 24442988 0.9034 2016/8/26 SRX1795639 Seedling Hypocotyl (S.H) hypocotyl Col-0 -- -- PRJNA314076 24701397 0.8722 2016/8/26 SRX1796199 Senescent internode (IN.sn) internode Col-0 -- -- PRJNA314076 27479913 0.8162 2016/8/26 SRX1796196 Senescent silique 2 (SL.sn2) siliques Col-0 -- -- PRJNA314076 25629144 0.7851 2016/8/26 SRX1795803 Sepals of the mature flower (F.SP.ad) sepal Col-0 -- -- PRJNA314076 23765968 0.8352 2016/8/26 SRX1795837 Sepals of the young flower (F.SP.y) sepal Col-0 -- -- PRJNA314076 24982868 0.8513 2016/8/26 SRX1795976 Silique 2 (SL2) siliques Col-0 -- -- PRJNA314076 29934960 0.7511 2016/8/26 SRX1795998 Silique 6 (SL6) siliques Col-0 -- -- PRJNA314076 28165339 0.7517 2016/8/26 SRX1796030 Silique 8 (SL8) siliques Col-0 -- -- PRJNA314076 30873096 0.7464 2016/8/26 SRX1795783 Stamen filaments of the mature flower (F.FM.ad) stamen filament Col-0 -- -- PRJNA314076 30866223 0.8031 2016/8/26 SRX1796146 Stigmatic tissue (STI) stigma Col-0 -- -- PRJNA314076 32241806 0.7669 2016/8/26 SRX1796042 Young seeds 1 (SD.y1) seed Col-0 -- -- PRJNA314076 25576292 0.8363 2016/8/26 SRX1796053 Young seeds 2 (SD.y2) seed Col-0 -- -- PRJNA314076 28131139 0.7812 2016/8/26 SRX1796065 Young seeds 3 (SD.y3) seed Col-0 -- -- PRJNA314076 27491378 0.8369 2016/8/26 SRX1796073 Young seeds 4 (SD.y4) seed Col-0 -- -- PRJNA314076 27335625 0.8547 2016/8/26 SRX1796085 Young seeds 5 (SD.y5) seed Col-0 -- -- PRJNA314076 26085742 0.8001 2016/8/26 GSM2096914 MUT_IP seedlings Col-0 atalkbh10b -/- -- PRJNA316096 15509333 0.7544 2018/2/8 SRX1712745 DEXp:MLACC-mYFP ppsdes plants infiltrated with dexamethasone, 0 h, leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) DEXp:MLACC-mYFP -- PRJNA318880 26070997 0.8594 2017/12/15 SRX1712748 DEXp:MLACC-mYFP ppsdes plants infiltrated with dexamethasone, 2 h, leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) DEXp:MLACC-mYFP -- PRJNA318880 25523568 0.8769 2017/12/15 SRX1712751 DEXp:MLACC-mYFP ppsdes plants infiltrated with dexamethasone, 4 h, leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) DEXp:MLACC-mYFP -- PRJNA318880 26166188 0.868 2017/12/15 SRX1712754 DEXp:MLACC-mYFP ppsdes plants infiltrated with dexamethasone, 6 h, leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) DEXp:MLACC-mYFP -- PRJNA318880 23140132 0.9037 2017/12/15 SRX1712757 DEXp:MLACC-mYFP ppsdes plants infiltrated with dexamethasone, 8 h, leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) DEXp:MLACC-mYFP -- PRJNA318880 25883319 0.8899 2017/12/15 SRX1716761 CK2 root Col-0 -- Mock PRJNA319138 15805619 0.9184 2016/4/22 SRX1759233 OTU5_control root Col-0 OUT5 -- PRJNA321477 29448997 0.8011 2017/11/15 SRX1759239 OTU5_low_Pi root Col-0 OUT5 -- PRJNA321477 23740891 0.8091 2017/11/15 SRX1759230 WT_control root Col-0 wild type -- PRJNA321477 30182167 0.7889 2017/11/15 SRX1759236 WT_low_Pi root Col-0 wild type -- PRJNA321477 28611367 0.8059 2017/11/15 GSM2157790 Whole plant whole plant Col-0 wild type -- PRJNA322061 42847608 0.9658 2018/4/16 SRX1881751 Cold 1 hour leaves Col-0 -- cold PRJNA324514 39782302 0.9034 2016/8/26 SRX1881839 Cold 12 hours leaves Col-0 -- cold PRJNA324514 36203588 0.9146 2016/8/26 SRX1881841 Cold 24 hours leaves Col-0 -- cold PRJNA324514 43221967 0.8688 2016/8/26 SRX1881753 Cold 3 hours leaves Col-0 -- cold PRJNA324514 27297258 0.9087 2016/8/26 SRX1881761 Cold 6 hours leaves Col-0 -- cold PRJNA324514 25601261 0.9113 2016/8/26 SRX1881868 Heat 1 hour leaves Col-0 -- heat PRJNA324514 13822746 0.8176 2016/8/26 SRX1881889 Heat 12 hours leaves Col-0 -- heat PRJNA324514 16739193 0.8006 2016/8/26 SRX1881908 Heat 24 hours leaves Col-0 -- heat PRJNA324514 16442117 0.8158 2016/8/26 SRX1882433 Wounding 1 hour leaves Col-0 -- wounding PRJNA324514 16104177 0.8435 2016/8/26 SRX1882503 Wounding 12 hours leaves Col-0 -- wounding PRJNA324514 19322440 0.8328 2016/8/26 SRX1882526 Wounding 24 hours leaves Col-0 -- wounding PRJNA324514 17097515 0.8442 2016/8/26 SRX1882458 Wounding 3 hours leaves Col-0 -- wounding PRJNA324514 15568873 0.8116 2016/8/26 SRX1882551 Wounding 48 hours leaves Col-0 -- wounding PRJNA324514 14448564 0.8423 2016/8/26 SRX1882481 Wounding 6 hours leaves Col-0 -- wounding PRJNA324514 20357656 0.8213 2016/8/26 GSM2204073 Alternaria brassicicola treated Col-0 rosette leaves Col-0 -- Alternaria brassicicola treated PRJNA326102 43894727 0.7867 2019/6/17 GSM2204070 mock treated Col-0 rosette leaves Col-0 -- mock treated PRJNA326102 53542201 0.7079 2019/6/17 GSM2204067 untreated Col-0 rosette leaves Col-0 -- untreated PRJNA326102 29918887 0.7812 2019/6/17 SRX1977887 Col1_P-limited root Col-0 Col1 P-limited PRJNA330878 18460905 0.8807 2017/5/4 SRX1977890 Col1_P-replete root Col-0 Col1 Mock PRJNA330878 15200367 0.8286 2017/5/4 SRX1977893 Col2_P-limited root Col-0 Col2 P-limited PRJNA330878 33293341 0.7309 2017/5/4 SRX1977896 Col2_P-replete root Col-0 Col2 Mock PRJNA330878 27890543 0.7303 2017/5/4 SRX1977869 cbl1_P-limited root Col-0 cbl1 P-limited PRJNA330878 22181223 0.8665 2017/5/4 SRX1977872 cbl1_P-replete root Col-0 cbl1 P-replete PRJNA330878 15364587 0.8963 2017/5/4 SRX1977875 cipk14_P-limited root Col-0 cipk14 P-limited PRJNA330878 16010344 0.8935 2017/5/4 SRX1977878 cipk14_P-replete root Col-0 cipk14 P-replete PRJNA330878 12653501 0.886 2017/5/4 SRX1977881 cipk2_P-limited root Col-0 cipk2 P-limited PRJNA330878 17757200 0.895 2017/5/4 SRX1977884 cipk2_P-replete root Col-0 cipk2 P-replete PRJNA330878 16399037 0.8901 2017/5/4 SRX1977899 msf1_P-limited root Col-0 msf1 P-limited PRJNA330878 15654737 0.8934 2017/5/4 SRX1977902 msf1_P-replete root Col-0 msf1 P-replete PRJNA330878 16652145 0.8848 2017/5/4 SRX1977905 pfs2_P-limited root Col-0 pfs2 P-limited PRJNA330878 21932808 0.8765 2017/5/4 SRX1977908 pfs2_P-replete root Col-0 pfs2 P-replete PRJNA330878 19618353 0.8746 2017/5/4 SRX1977911 pho2_P-limited root Col-0 pho2 P-limited PRJNA330878 14894369 0.8985 2017/5/4 SRX1977914 pho2_P-replete root Col-0 pho2 P-replete PRJNA330878 17114065 0.8961 2017/5/4 SRX1977917 phr1_1_P-limited root Col-0 phr1_1 P-limited PRJNA330878 15035518 0.896 2017/5/4 SRX1977920 phr1_1_P-replete root Col-0 phr1_1 P-replete PRJNA330878 18049315 0.8339 2017/5/4 SRX1977923 phr1_2_P-limited root Col-0 phr1_2 P-limited PRJNA330878 16950740 0.828 2017/5/4 SRX1977929 prce1_P-limited root Col-0 prce1 P-limited PRJNA330878 15466111 0.8859 2017/5/4 SRX1977932 prce1_P-replete root Col-0 prce1 P-replete PRJNA330878 21549286 0.8733 2017/5/4 SRX1977935 prce2_P-limited root Col-0 prce2 P-limited PRJNA330878 12475731 0.8901 2017/5/4 SRX1977938 prce2_P-replete root Col-0 prce2 P-replete PRJNA330878 31968380 0.8708 2017/5/4 SRX1977941 prce3_P-limited root Col-0 prce3 P-limited PRJNA330878 15660729 0.8942 2017/5/4 SRX1977944 prce3_P-replete root Col-0 prce3 P-replete PRJNA330878 15555123 0.8899 2017/5/4 SRX1977947 s6k2_P-limited root Col-0 s6k2 P-limited PRJNA330878 14596329 0.8893 2017/5/4 SRX1977950 s6k2_P-replete root Col-0 s6k2 P-replete PRJNA330878 16773345 0.8651 2017/5/4 SRX1977953 stp10_P-limited root Col-0 stp10 P-limited PRJNA330878 16511903 0.8978 2017/5/4 SRX1977956 stp10_P-replete root Col-0 stp10 P-replete PRJNA330878 19177540 0.8975 2017/5/4 GSM2301215 bou T-DNA insertion line, end of day leaves Col-0 bou T-DNA insertion line -- PRJNA341576 19661346 0.9138 2017/6/5 GSM2301227 bou T-DNA insertion line, end of night leaves Col-0 bou T-DNA insertion line -- PRJNA341576 26337580 0.9028 2017/6/5 GSM2301212 wild type, end of day leaves Col-0 wild type Mock PRJNA341576 30869744 0.8653 2017/6/5 GSM2301224 wild type, end of night leaves Col-0 wild type Photoperiod PRJNA341576 22015981 0.9163 2017/6/5 GSM2302841 L119_RNA 10days seedlings Col-0 wild type Mock PRJNA341942 10759543 0.9488 2019/9/7 GSM2302845 L119_zebularine_RNA 10days seedlings Col-0 wild type zebularine PRJNA341942 15869840 0.9345 2019/9/7 GSM2302843 rtel1-3_RNA 10days seedlings Col-0 rtel1-3 mutant Mock PRJNA341942 9874920 0.957 2019/9/7 GSM2302847 rtel1-3_zebularine_RNA 10days seedlings Col-0 rtel1-3 mutant zebularine PRJNA341942 15855997 0.9313 2019/9/7 SRX2436392 Pminus seedlings Col-0 -- Pi minus PRJNA354802 12859649 0.7002 2017/7/7 SRX2436385 Pplus seedlings Col-0 -- Pi plus PRJNA354802 8292474 0.8139 2017/7/7 GSM2981930 35S:TET1 leaves Col-0 35S:TET1 -- PRJNA359478 21566162 0.8876 2018/3/3 GSM2981927 Col-0 WT leaves Col-0 wild type -- PRJNA359478 24745701 0.7355 2018/3/3 GSM2474318 RNA-seq_Dark Grown cultured cell Col-0 -- Dark PRJNA369530 19404318 0.721 2017/8/22 GSM2474314 RNA-seq_Light Grown cultured cell Col-0 -- Mock PRJNA369530 23088109 0.7217 2017/8/22 SRX2613522 seedling, WT, MeJA seedlings Col-0 wild type MeJA PRJNA378128 12418524 0.953 2018/1/5 SRX2613520 seedling, WT, MeJA control seedlings Col-0 wild type Mock PRJNA378128 14587814 0.9143 2018/1/5 SRX2613525 seedling, WT, untreated seedlings Col-0 wild type -- PRJNA378128 14479156 0.7997 2018/1/5 SRX2613514 seedling, ago1-36, MeJA seedlings Col-0 ago1-36 MeJA PRJNA378128 15161346 0.9515 2018/1/5 SRX2613511 seedling, ago1-36, MeJA control seedlings Col-0 ago1-36 MeJA control PRJNA378128 12748444 0.9282 2018/1/5 SRX2613517 seedling, ago1-36, untreated seedlings Col-0 ago1-36 none PRJNA378128 9060268 0.8158 2018/1/5 SRX2641358 met1-3 mutant seedlings Col-0 -- -- PRJNA379224 35433495 0.7883 2017/8/22 SRX2641361 wild type control for met1-3 seedlings Col-0 -- -- PRJNA379224 60705543 0.8119 2017/8/22 SRX2700311 200bp_BpFLC_1 growth points Col-0 BpFLC over expression -- PRJNA379334 14859584 0.9203 2017/9/18 SRX2700310 200bp_BpFLC_2 growth points Col-0 BpFLC over expression -- PRJNA379334 12827210 0.9294 2017/9/19 SRX2700313 200bp_WT_1 growth points Col-0 wild type -- PRJNA379334 13545198 0.9119 2017/9/19 SRX2700312 200bp_WT_2 growth points Col-0 wild type -- PRJNA379334 12032161 0.9247 2017/9/19 SRX3268651 1-month-old leaf rosette leaf Col-0 wild type -- PRJNA380344 12162758 0.7514 2017/11/22 GSM2561483 Control group root Col-0 wild type Mock PRJNA381354 16569458 0.9338 2018/4/2 GSM2561487 ion Al treatment root Col-0 wild type Al3+* PRJNA381354 16946221 0.7932 2018/4/2 SRX2702471 Flower_Buds_with_Cu flower bud Col-0 -- Mock PRJNA381492 8979832 0.8839 2017/9/22 SRX2702468 Flower_Buds_without_Cu flower bud Col-0 -- Cu-limiting PRJNA381492 9254104 0.8716 2017/9/22 SRX2702477 Mature_Flowers_with_Cu flower Col-0 -- Mock PRJNA381492 7976029 0.7401 2017/9/22 SRX2702474 Mature_Flowers_without_Cu flower Col-0 -- Cu-limiting PRJNA381492 11234019 0.8854 2017/9/22 SRX2768414 arf8-7 stamens rep.1 stamen Col-0 arf8-7 -- PRJNA383483 46551426 0.9187 2018/5/31 SRX2768416 arf8-7 stamens rep.2 stamen Col-0 arf8-7 -- PRJNA383483 45921384 0.9243 2018/5/31 SRX2768410 wt stamens rep.1 stamen Col-0 wild type -- PRJNA383483 43146383 0.9266 2018/5/31 SRX2768412 wt stamens rep.2 stamen Col-0 wild type -- PRJNA383483 40394593 0.9329 2018/5/31 SRX2750232 Col-0, 12-day-old seedlings seedlings Col-0 wild type -- PRJNA383744 38248036 0.8584 2017/12/15 SRX2750236 mac3amac3b, 12-day-old seedlings seedlings Col-0 mac3amac3b -- PRJNA383744 16743420 0.8537 2017/12/15 SRX2750234 mac7-1, 12-day-old seedlings seedlings Col-0 mac7-1 -- PRJNA383744 11709368 0.8058 2017/12/15 SRX2750238 prl1prl2, 12-day-old seedlings seedlings Col-0 prl1prl2 -- PRJNA383744 25206392 0.8557 2017/12/15 SRX2977304 WT pollen control pollen grains Col-0 wild type Mock PRJNA392695 32022493 0.9372 2018/1/1 SRX2977314 WT pollen heat stress pollen grains Col-0 wild type heat 40 PRJNA392695 32385893 0.9207 2018/1/1 SRX2977305 cngc16 mutant pollen control pollen grains Col-0 cngc16-2 -/- Mock PRJNA392695 23968442 0.9545 2018/1/1 SRX2977306 cngc16 mutant pollen heat stress pollen grains Col-0 cngc16-2 -/- heat stress PRJNA392695 22624333 0.9544 2018/1/1 SRX3033529 myb48myb59 leaves Col-0 myb48myb59 -- PRJNA395645 23404575 0.8784 2017/7/25 SRX3066603 third and fourth leaves leaves Col-0 -- -- PRJNA397381 22636976 0.9079 2017/11/10 SRX3178394 prp4a-1 kinase mutant seedlings Col-0 prp4a-1 kinase mutant -- PRJNA401366 30924571 0.9683 2018/9/4 SRX3178390 sac3a-3 mutant seedlings Col-0 sac3a-3 mutant -- PRJNA401366 31865347 0.9661 2018/9/4 SRX3178396 wild type seedlings Col-0 wild type -- PRJNA401366 31295837 0.9677 2018/9/4 SRX5371760 Cotyledons_cold27 cotyledon Col-0 -- 27 hours oH cold treatment PRJNA411947 21990135 0.8618 2019/2/14 SRX5371759 Cotyledons_cold3 cotyledon Col-0 -- 3 hours oH cold treatment PRJNA411947 18822675 0.8101 2019/2/14 SRX5371792 Cotyledons_control cotyledon Col-0 -- Mock PRJNA411947 17652866 0.8579 2019/2/14 SRX5371788 Flower_cold3 flower Col-0 -- -- PRJNA411947 25762356 0.8924 2019/2/14 SRX5371768 Flower_control flower Col-0 -- -- PRJNA411947 18930653 0.8576 2019/2/14 SRX5371774 Hypocotyl_cold27 hypocotyl Col-0 -- -- PRJNA411947 21497670 0.8477 2019/2/14 SRX5371764 Hypocotyl_cold3 hypocotyl Col-0 -- -- PRJNA411947 20939955 0.8074 2019/2/14 SRX5371762 Hypocotyl_control hypocotyl Col-0 -- -- PRJNA411947 21680219 0.7676 2019/2/14 SRX5371778 Leaf_cold3 leaves Col-0 -- -- PRJNA411947 19772481 0.7944 2019/2/14 SRX5371770 Seeds_cold27 seed Col-0 -- -- PRJNA411947 24075817 0.7589 2019/2/14 SRX5371780 Seeds_cold3 seed Col-0 -- -- PRJNA411947 30399955 0.8356 2019/2/14 SRX5371782 Young_flower_cold3 flower Col-0 -- -- PRJNA411947 18572480 0.851 2019/2/14 SRX3345260 BAC41705 root Col-0 -- Pseudomonas simiae WCS417 PRJNA412447 17888159 0.8458 2017/10/31 SRX3345272 BAC4171 root Col-0 -- Pseudomonas simiae WCS417 PRJNA412447 30684881 0.8425 2017/10/31 SRX3345234 BAC4173 root Col-0 -- Pseudomonas simiae WCS417 PRJNA412447 15391387 0.8183 2017/10/31 SRX3345255 BAC4176 root Col-0 -- Pseudomonas simiae WCS417 PRJNA412447 33875620 0.8407 2017/10/31 SRX3345247 CHITIN05 root Col-0 -- chitin PRJNA412447 52824789 0.8454 2017/10/31 SRX3345240 CHITIN1 root Col-0 -- chitin PRJNA412447 33168269 0.8358 2017/10/31 SRX3345220 CHITIN3 root Col-0 -- chitin PRJNA412447 31825772 0.8132 2017/10/31 SRX3345216 CHITIN6 root Col-0 -- chitin PRJNA412447 47151170 0.8533 2017/10/31 SRX3345261 CT0 root Col-0 -- -- PRJNA412447 95694055 0.8449 2017/10/31 SRX3345263 CT05 root Col-0 -- Mock PRJNA412447 48394757 0.8711 2017/10/31 SRX3345251 CT1 root Col-0 -- Mock PRJNA412447 20462242 0.8525 2017/10/31 SRX3345237 CT3 root Col-0 -- Mock PRJNA412447 63246648 0.8389 2017/10/31 SRX3345218 CT6 root Col-0 -- Mock PRJNA412447 27195812 0.8614 2017/10/31 SRX3345245 FLG05 root Col-0 -- Hlg22(Pseudomonas aeruginosa) PRJNA412447 45213725 0.8641 2017/10/31 SRX3345269 FLG1 root Col-0 -- Hlg22(Pseudomonas aeruginosa) PRJNA412447 31316276 0.8504 2017/10/31 SRX3345222 FLG3 root Col-0 -- Hlg22(Pseudomonas aeruginosa) PRJNA412447 47520213 0.8237 2017/10/31 SRX3345243 FLG41705 root Col-0 -- Hlg22(Pseudomonas simiae WCS417) PRJNA412447 37931966 0.8671 2017/10/31 SRX3345275 FLG4171 root Col-0 -- Hlg22(Pseudomonas simiae WCS417) PRJNA412447 12911660 0.8448 2017/10/31 SRX3345228 FLG6 root Col-0 -- Hlg22(Pseudomonas aeruginosa) PRJNA412447 17739838 0.8527 2017/10/31 SRX3259643 wt_lowLight aerial seedling Col-0 wild type low light intensity PRJNA412712 23850782 0.9638 2018/11/15 SRX3241540 P. xylostella not added leaves Col-0 -- Mock PRJNA413057 14825219 0.9302 2018/1/1 SRX3276474 auxin modulator whole seedling Col-0 -- auxin modulator PRJNA414112 19835373 0.8768 2019/9/1 SRX3276475 control whole seedling Col-0 -- control PRJNA414112 24236340 0.8948 2019/9/1 SRX3401238 pen triple mutant leaves Col-0 not collected plants were grown on soil Hor 49 days PRJNA418322 10978135 0.9538 2017/11/16 SRX3401237 wildtype leaves Col-0 not collected plants were grown on soil Hor 49 days PRJNA418322 11737543 0.9415 2017/11/16 SRX3457846 Col-0 CLE26 cotyledon Col-0 Col-0 CLE26 PRJNA421666 58180646 0.8588 2018/5/15 SRX3457850 Col-0 CLE45 cotyledon Col-0 Col-0 CLE45 PRJNA421666 67643255 0.8552 2018/5/15 SRX3457848 Col-0 mock cotyledon Col-0 Col-0 Mock PRJNA421666 59166439 0.8355 2018/5/15 SRX3547092 Col-0 DMSO_seedlings seedlings Col-0 wild type DMSO PRJNA429347 16050190 0.901 2018/1/12 SRX3547095 Col-0 isoxaben_seedlings seedlings Col-0 wild type isoxaben PRJNA429347 11178742 0.8976 2018/1/12 SRX3547098 ixr1-1 DMSO_seedlings seedlings Col-0 Isoxaben-resistant mutant ixr1-1 DMSO PRJNA429347 9129541 0.8874 2018/1/12 SRX3547101 ixr1-1 isoxaben_seedlings seedlings Col-0 Isoxaben-resistant mutant ixr1-1 isoxaben PRJNA429347 11501724 0.8971 2018/1/12 GSM4029329 Degradation_Col_0h 2-week seedlings Col-0 wild type cordycepin for 0 hour PRJNA433501 13837980 0.8909 2019/8/14 GSM4029335 Degradation_Col_1h 2-week seedlings Col-0 wild type cordycepin for 1 hour PRJNA433501 15432085 0.8766 2019/8/14 GSM4029338 Degradation_Col_2h 2-week seedlings Col-0 wild type cordycepin for 2 hours PRJNA433501 15885070 0.8918 2019/8/14 GSM4029341 Degradation_Col_4h 2-week seedlings Col-0 wild type cordycepin for 4 hours PRJNA433501 14648685 0.897 2019/8/14 GSM4029344 Degradation_Col_8h 2-week seedlings Col-0 wild type cordycepin for 8 hours PRJNA433501 14596099 0.8696 2019/8/14 SRX3742577 WT seedlings Col-0 wild type -- PRJNA435953 22516864 0.9761 2018/4/2 SRX3807348 PSR2_4 weeks leaves Col-0 PSR2-5 -- PRJNA438701 30937643 0.8474 2018/3/17 SRX3807352 WT_4 weeks leaves Col-0 Col -- PRJNA438701 22558281 0.8521 2018/3/17 GSM3294424 Col-0 with Rnase R digestion inflorescences Col-0 wild type -- PRJNA482052 12100128 0.9482 2019/4/18 GSM3294422 Col-0 without Rnase R digestion inflorescences Col-0 wild type -- PRJNA482052 20416556 0.9311 2019/4/18 GSM3294428 dbr1-2 with Rnase R digestion inflorescences Col-0 dbr1-2 mutant -- PRJNA482052 16704430 0.9417 2019/4/18 GSM3294426 dbr1-2 without Rnase R digestion inflorescences Col-0 dbr1-2 mutant -- PRJNA482052 20430398 0.9383 2019/4/18 SRX4488591 Ath_WD_T14 rosette leaf Col-0 -- drought PRJNA483528 33726543 0.9611 2019/4/2 SRX4488625 Ath_WD_T5 rosette leaf Col-0 -- drought PRJNA483528 34059404 0.9504 2019/4/2 SRX4488606 Ath_WW_T0 rosette leaf Col-0 -- well water PRJNA483528 35349745 0.9233 2019/4/2 SRX4488615 Ath_WW_T14 rosette leaf Col-0 -- well water PRJNA483528 39989750 0.9089 2019/4/2 SRX4488609 Ath_WW_T5 rosette leaf Col-0 -- well water PRJNA483528 41516782 0.9288 2019/4/2 SRX4546504 C234 leaves Col-0 -- C234-inHiltrated* PRJNA485392 25280893 0.905 2019/4/4 SRX4546506 CK leaves Col-0 -- mock-treated PRJNA485392 24626093 0.9036 2019/4/4 SRX4546500 Psm leaves Col-0 -- Pseudomonas syringae pv. maculicola-inHected (Psm)* PRJNA485392 25867176 0.9063 2019/4/4 SRX4546501 PsmC234 leaves Col-0 -- both P. syringae and C234-inHected* PRJNA485392 25171288 0.9041 2019/4/4 SRX4599564 mRNASeq of Arabidopsis thaliana 35S:GRF5 4h 21C mock shoot Col-0 35S:GRF5 4h 21C mock PRJNA487166 35796220 0.8962 2019/9/22 SRX4599566 mRNASeq of Arabidopsis thaliana 35S:GRF5 4h 4C GA shoot Col-0 35S:GRF5 4h 4C GA PRJNA487166 49714050 0.9046 2019/9/22 SRX4599562 mRNASeq of Arabidopsis thaliana 35S:GRF5 4h 4C mock shoot Col-0 35S:GRF5 4h 4C mock PRJNA487166 43084606 0.8983 2019/9/22 SRX4599577 mRNASeq of Arabidopsis thaliana 35S:miR396b 4h 21C mock shoot Col-0 35S:miR396b 4h 21C mock PRJNA487166 39661724 0.9061 2019/9/22 SRX4599571 mRNASeq of Arabidopsis thaliana 35S:miR396b 4h 4C GA shoot Col-0 35S:miR396b 4h 4C GA PRJNA487166 33209840 0.908 2019/9/22 SRX4599574 mRNASeq of Arabidopsis thaliana 35S:miR396b 4h 4C mock shoot Col-0 35S:miR396b 4h 4C mock PRJNA487166 16996508 0.9028 2019/9/22 SRX4599582 mRNASeq of Arabidopsis thaliana Col 4h 21C mock shoot Col-0 wild type 4h 21C mock PRJNA487166 36193296 0.9028 2019/9/22 SRX4599580 mRNASeq of Arabidopsis thaliana Col 4h 4C GA shoot Col-0 wild type 4h 4C GA PRJNA487166 28223801 0.9113 2019/9/22 SRX4599581 mRNASeq of Arabidopsis thaliana Col 4h 4C mock shoot Col-0 wild type 4h 4C mock PRJNA487166 38140394 0.8939 2019/9/22 SRX4633181 transgenic line leaf Col-0 Hrip1-OX transgenic line transgene PRJNA488967 15194156 0.8413 2019/10/1 SRX4633179 wild type leaf Col-0 wild type -- PRJNA488967 13175164 0.8411 2019/10/1 SRX4668103 WT-Drought seedling Col-0 wild type Drought* PRJNA490078 18455730 0.8869 2019/4/20 SRX4668099 WT-Normal-1 seedling Col-0 wild type Normal* PRJNA490078 16337519 0.9309 2019/4/20 SRX4668101 jmj17-Drought seedling Col-0 jmj17 Drought* PRJNA490078 20492648 0.89 2019/4/20 SRX4668097 jmj17_Normal seedling Col-0 jmj17 Normal* PRJNA490078 17963911 0.8007 2019/4/20 SRX5016264 Col_D Leaves Col-0 wild type Pst DC3000 treatment PRJNA504534 24326018 0.9513 2019/2/25 SRX5016269 Col_Mock Leaves Col-0 wild type Mock PRJNA504534 29550015 0.9482 2019/2/25 SRX5016268 eds1_D Leaves Col-0 eds1* Pst DC3000 treatment PRJNA504534 22619142 0.9558 2019/2/25 SRX5016266 rgl3_D Leaves Col-0 rgl3* Pst DC3000 treatment PRJNA504534 22517085 0.9327 2019/2/25 GSM3466503 Columbia gynoecia gynoecia Col-0 wild type -- PRJNA505255 10790870 0.8223 2019/7/16 GSM3466513 Pstk_axr3 gynoecia gynoecia Col-0 Pstk_axr3 -- PRJNA505255 9501435 0.8169 2019/7/16 GSM3466517 arf6 Pstk_axr3 15-5 gynoecia gynoecia Col-0 arf6 Pstk_axr3 15-5 -- PRJNA505255 7804005 0.8299 2019/7/16 GSM3466518 arf6 Pstk_axr3 25-2 gynoecia gynoecia Col-0 arf6 Pstk_axr3 15-5 -- PRJNA505255 16382428 0.8334 2019/7/16 GSM3466507 arf6arf8 gynoecia gynoecia Col-0 arf6arf8 -- PRJNA505255 15584888 0.8223 2019/7/16 GSM3466524 arf6arf8 stamens stamens Col-0 arf6arf8 -- PRJNA505255 13774806 0.8142 2019/7/16 GSM3466509 mARF8 3B gynoecia gynoecia Col-0 mARF8 3B -- PRJNA505255 7492193 0.8222 2019/7/16 GSM3466526 mARF8 3B stamens stamens Col-0 mARF8 4B -- PRJNA505255 6104934 0.8141 2019/7/16 GSM3466740 Col-0 RNA-seq Apical portions of plants (cut in hypocotyl) Col-0 wild type -- PRJNA505275 18821412 0.7383 2020/3/19 GSM3466746 SOB3-D RNA-seq Apical portions of plants (cut in hypocotyl) Col-0 SOB3-D -- PRJNA505275 8326869 0.8115 2020/3/19 GSM3466749 pif4 pif5 pif7 RNA-seq Apical portions of plants (cut in hypocotyl) Col-0 pif4-101 pif5(pil6-1) pif7-1 -- PRJNA505275 15769739 0.7629 2020/3/19 GSM3466743 sob3-6 RNA-seq Apical portions of plants (cut in hypocotyl) Col-0 sob3-6 -- PRJNA505275 13926024 0.7682 2020/3/19 SRX5112494 Arabidopsis thaliana RNAseq (ATS1-OE and WT) leaves Col-0 -- -- PRJNA509083 23211043 0.9535 2018/12/11 SRX5431766 Col-0 7-day-old root tips Col-0 wild type 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA524334 29887649 0.8313 2020/3/1 SRX5431764 bri3 7-day-old root tips Col-0 bri3 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA524334 62668083 0.8397 2020/3/1 SRX5431762 bri3-RESCUED_refline_20 7-day-old root tips Col-0 bri3-RESCUED 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA524334 55113787 0.8359 2020/3/1 SRX5507270 FAD3 and LPAT2 co-expression line early curved embryo 5 days after flowering seed Col-0 -- -- PRJNA526597 22374896 0.7721 2019/3/12 SRX5507267 FAD3 and LPAT2 co-expression line late curved embryo 7 days after flowering seed Col-0 -- -- PRJNA526597 23591498 0.7912 2019/3/12 SRX5507273 FAD3 and LPAT2 co-expression line linear embryo 3 days after flowering seed Col-0 -- -- PRJNA526597 26611855 0.7573 2019/3/12 SRX5507294 FAD3 overexpression line early curved embryo 5 days after flowering seed Col-0 -- -- PRJNA526597 27705182 0.7479 2019/3/12 SRX5507298 FAD3 overexpression line late curved embryo 7 days after flowering seed Col-0 -- -- PRJNA526597 28289129 0.7293 2019/3/12 SRX5507296 FAD3 overexpression line linear embryo 3 days after flowering seed Col-0 -- -- PRJNA526597 23588615 0.7779 2019/3/12 SRX5507274 LPAT2 overexpression line early curved embryo 5 days after flowering seed Col-0 -- -- PRJNA526597 30511948 0.801 2019/3/12 SRX5507277 LPAT2 overexpression line late curved embryo 7 days after flowering seed Col-0 -- -- PRJNA526597 26528627 0.8059 2019/3/12 SRX5507266 LPAT2 overexpression line linear embryo 3 days after flowering seed Col-0 -- -- PRJNA526597 23326900 0.7747 2019/3/12 SRX5507281 wild type early curved embryo 5 days after flowering seed Col-0 -- -- PRJNA526597 26907121 0.7486 2019/3/12 SRX5507284 wild type late curved embryo 7 days after flowering seed Col-0 -- -- PRJNA526597 27807967 0.7441 2019/3/12 SRX5507278 wild type linear embryo 3 days after flowering seed Col-0 -- -- PRJNA526597 29779809 0.7828 2019/3/12 SRX5733589 atms1 seedling Col-0 atms1 -- PRJNA535399 16385304 0.9202 2019/12/1 GSM3834758 Mature leaf leaves no. 5-6th darkened for 5 days Col-0 wild type -- PRJNA545711 40426876 0.7619 2019/12/30 GSM3834756 Mature leaf uncovered leaves Col-0 wild type -- PRJNA545711 42866096 0.7002 2019/12/30 SRX6422635 WT-covered Root Col-0 wild type dark PRJNA553518 11208500 0.9645 2019/7/24 SRX6422629 WT-illuminated Root Col-0 hy5 mutant light PRJNA553518 11236923 0.964 2019/7/24 SRX6422633 WT-illuminated Root Col-0 wild type light PRJNA553518 11210706 0.944 2019/7/24 SRX6422631 hy5-covered Root Col-0 hy5 mutant dark PRJNA553518 11146864 0.9631 2019/7/24 SRX6666359 Col-0_wild-type 7-day-old root tips Col-0 wild type 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA559150 39175359 0.8917 2019/12/2 SRX6666361 big_brother_mutant 7-day-old root tips Col-0 bb 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA559150 44248684 0.9083 2019/12/2 SRX6666363 jumonji14_mutant 7-day-old root tips Col-0 jmj14 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA559150 40919958 0.9059 2019/12/2 GSM4038494 Col-0 aerial part aerial part Col-0 wild type -- PRJNA560784 16775725 0.7359 2020/2/20 SRX6960116 Leaf cotyledon Col-0 wild type -- PRJNA576277 21979065 0.9198 2019/10/8 SRX6960117 Root root Col-0 wild type -- PRJNA576277 22018487 0.9092 2019/10/8 SRX7070831 brx_jmj14_double_mutant 7-day-old root tips Col-0 brx-2 jmj14-1 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA580217 64827718 0.7449 2019/12/2 SRX7070829 brx_mutant 7-day-old root tips Col-0 brx-2 0.5 MS / 0.8% agar / 0.3% sucrose PRJNA580217 59294053 0.7702 2019/12/2 SRX7418517 Col-0 Leaves Col-0 -- -- PRJNA596617 30773210 0.9433 2020/2/1 SRX7418523 R35SpmB42 Leaves Col-0 -- -- PRJNA596617 34823362 0.9422 2020/2/1 SRX7418520 mBpmBcmyc Leaves Col-0 -- -- PRJNA596617 34106534 0.9395 2020/2/1 SRX7759651 Col-CK2 root tip Col-0 wild type CK PRJNA605515 23053846 0.925 2020/2/20 SRX7759652 Col-CK3 root tip Col-0 wild type CK PRJNA605515 23053846 0.9261 2020/2/22 SRX7759653 Col-WS2 root tip Col-0 wild type water potential gradient assay* PRJNA605515 23074977 0.9315 2020/2/20 SRX7759654 Col-WS3 root tip Col-0 wild type water potential gradient assay* PRJNA605515 23074977 0.9307 2020/2/22 SRX7759655 IREW-CK2 root tip Col-0 IREW CK PRJNA605515 23095668 0.9366 2020/2/20 SRX7759657 IREW-WS2 root tip Col-0 IREW water potential gradient assay* PRJNA605515 22830200 0.9427 2020/2/20 SRX8094380 at_inflorescence_RNA_rep2_4x Col inflorescence Col-0 -- -- PRJNA624290 26026939 0.9023 2020/4/11 DRX014762 RNA Seq of rfl2_5 seedlings Col-0 rfl2 -- PRJDB2380 14744964 0.7357 2017/1/2 DRX014760 Col-0 rep1 seedlings Col-0 wild type -- PRJDB2380 11879962 0.7388 2017/1/2 DRX028726 Arabidopsis_Inflorescence_2C-1 inflorescence meristems Col-0 -- -- PRJDB3784 33022273 0.9048 2018/12/25 DRX028729 Arabidopsis_Inflorescence_4C-1 inflorescence meristems Col-0 -- -- PRJDB3784 33642970 0.9056 2018/12/25 DRX028720 Arabidopsis_Vegetative shoot_2C-1 meristems and young leaves Col-0 -- -- PRJDB3784 10644827 0.8664 2018/12/25 DRX028723 Arabidopsis_Vegetative shoot_4C-1 meristems and young leaves Col-0 -- -- PRJDB3784 10052016 0.8664 2018/12/25 DRX060009 Col-0_A1 root Col-0 -- AI PRJDB4993 7437828 0.9259 2018/7/17 DRX060012 Col-0_C1 root Col-0 -- Mock PRJDB4993 8028261 0.917 2018/7/17 DRX064458 B_1 root Col-0 -- -B PRJDB5141 21225643 0.9302 2017/6/19 DRX064454 Ca_1 root Col-0 -- -Ca PRJDB5141 22171345 0.9495 2017/6/19 DRX064462 Cu_1 root Col-0 -- -Cu PRJDB5141 18186495 0.9255 2017/6/19 DRX064459 Fe_1 root Col-0 -- -He PRJDB5141 19547010 0.9215 2017/6/19 DRX064453 K_1 root Col-0 -- -K PRJDB5141 19143287 0.929 2017/6/19 DRX064455 Mg_1 root Col-0 -- -Mg PRJDB5141 21279018 0.9262 2017/6/19 DRX064460 Mn_1 root Col-0 -- -Mn PRJDB5141 23638602 0.92 2017/6/19 DRX064463 Mo_1 root Col-0 -- -Mo PRJDB5141 20974220 0.9185 2017/6/19 DRX064452 N_1 root Col-0 -- -N PRJDB5141 19725062 0.9308 2017/6/19 DRX064456 P_1 root Col-0 -- -P PRJDB5141 19683272 0.9303 2017/6/19 DRX064457 S_1 root Col-0 -- -S PRJDB5141 21640246 0.9144 2017/6/19 DRX064461 Zn_1 root Col-0 -- -Zn PRJDB5141 19507942 0.9306 2017/6/19 DRX064451 Ctrl_1 root Col-0 -- Mock PRJDB5141 20137756 0.9228 2017/6/19 DRX065034 MybOX_H2O_1 root Col-0 MybOX -- PRJDB5175 8633303 0.7625 2018/9/6 DRX065032 myb30_H2O_1 root Col-0 myb30-2 -- PRJDB5175 7187583 0.832 2018/9/6 DRX065028 myb30_MS_1 root Col-0 myb30-2 -- PRJDB5175 8160721 0.8026 2018/9/6 DRX065024 Col_MS_1 root Col-0 wild type Mock PRJDB5175 7992921 0.788 2018/9/6 DRX066826 ibm1_RNA_A1 -- Col-0 ibm1 -- PRJDB5192 14813397 0.9282 2017/1/27 DRX066829 ibm1 ldl2_RNA_A1 -- Col-0 ibm1 ldl2 -- PRJDB5192 15036304 0.9206 2017/1/27 DRX066835 ldl2_RNA_B1 -- Col-0 ldl2 -- PRJDB5192 14315521 0.8852 2017/1/27 DRX066838 suvh456_RNA_B1 -- Col-0 suvh456 -- PRJDB5192 17577240 0.8842 2017/1/27 DRX066832 WT_RNA_B1 -- Col-0 wild type -- PRJDB5192 14026572 0.8632 2017/1/27 DRX078174 Arabidopsis thaliana atlbr-2_LPStreated_rep1 whole plant Col-0 atlbr-2 -- PRJDB5481 12017778 0.9402 2017/12/8 DRX078171 Arabidopsis thaliana atlbr-2_untreated_rep1 whole plant Col-0 atlbr-2 -- PRJDB5481 10930370 0.945 2017/12/8 DRX078168 Arabidopsis thaliana WT_LPStreated_rep1 whole plant Col-0 wild type LPS PRJDB5481 10642849 0.9451 2017/12/8 DRX078165 Arabidopsis thaliana WT_untreated_rep1 whole plant Col-0 wild type Mock PRJDB5481 10811031 0.8891 2017/12/8 DRX084091 35S-TIR1_IAA_replicate1 seedlings Col-0 35S-TIR1 -- PRJDB5672 25783850 0.8192 2018/1/26 DRX084094 35S-TIR1_cvxIAA_replicate1 seedlings Col-0 35S-TIR1 -- PRJDB5672 20266863 0.8222 2018/1/26 DRX084088 35S-TIR1_mock_replicate1 seedlings Col-0 35S-TIR1 -- PRJDB5672 18906280 0.9089 2018/1/26 DRX084100 35S-ccvTIR1_IAA_replicate1 seedlings Col-0 35S-ccvTIR1 -- PRJDB5672 23916293 0.9158 2018/1/26 DRX084103 35S-ccvTIR1_cvxIAA_replicate1 seedlings Col-0 35S-ccvTIR1 -- PRJDB5672 17035803 0.9019 2018/1/26 DRX084097 35S-ccvTIR1_mock_replicate1 seedlings Col-0 35S-ccvTIR1 -- PRJDB5672 20368375 0.9135 2018/1/26 DRX084082 WT_IAA_replicate1 seedlings Col-0 wild type IAA PRJDB5672 27997673 0.7994 2018/1/26 DRX084079 WT_mock_replicate1 seedlings Col-0 wild type Mock PRJDB5672 19551375 0.8544 2018/1/26 DRX084085 WT_cvxIAA_replicate1 seedlings Col-0 wild type cvxIAA PRJDB5672 25252507 0.8733 2018/1/26 DRX093716 WT_PHA_1 -- Col-0 wild type PHA PRJDB6172 19646185 0.8375 2019/5/3 DRX093713 WT_DMSO_1 -- Col-0 wild type control PRJDB6172 18199998 0.8605 2019/5/3 DRX176874 Col-0d_moc_1 -- Col-0 -- 0day mock PRJDB6319 33140691 0.7268 2019/7/26 DRX176886 Col-1d_KDB_1 -- Col-0 -- 1day KDB PRJDB6319 32601496 0.7418 2019/7/26 DRX176877 Col-1d_moc_1 -- Col-0 -- 1day mock PRJDB6319 32144087 0.7161 2019/7/26 DRX176889 Col-3d_KDB_1 -- Col-0 -- 3day KDB PRJDB6319 36091075 0.793 2019/7/26 DRX176880 Col-3d_moc_1 -- Col-0 -- 3day mock PRJDB6319 28750790 0.7278 2019/7/26 DRX176884 Col-5d_moc_2 -- Col-0 -- 5day mock PRJDB6319 32855500 0.7095 2019/7/26 DRX111920 day3_negative_1 shoot apex Col-0 -- Mock PRJDB6573 17105033 0.8965 2018/5/8 DRX111926 day5_negative_1 shoot apex Col-0 -- Mock PRJDB6573 12759555 0.9048 2018/5/8 DRX139781 yokamoto08 root Col-0 NR-null mutant -- PRJDB7349 15081713 0.8628 2019/7/8 DRX139780 yokamoto07 root Col-0 wild type -- PRJDB7349 13369305 0.855 2019/7/8 DRX139779 yokamoto04 shoot Col-0 NR-null mutant -- PRJDB7349 13602560 0.8652 2019/7/8 DRX139778 yokamoto03 shoot Col-0 wild type -- PRJDB7349 12559347 0.8276 2019/7/8 DRX139786 B2_c_rep1 seedlings Col-0 -- Mock PRJDB7363 16341347 0.7626 2019/1/30 DRX139792 B3_c_rep1 seedlings Col-0 -- Mock PRJDB7363 14479144 0.7897 2019/1/30 DRX139798 VC_c_rep1 seedlings Col-0 -- Mock PRJDB7363 13387263 0.8073 2019/1/30 DRX139788 B2_d_rep1 seedlings Col-0 -- dry PRJDB7363 10779812 0.8783 2019/1/30 DRX139794 B3_d_rep1 seedlings Col-0 -- dry PRJDB7363 9287396 0.8766 2019/1/30 DRX139800 VC_d_rep1 seedlings Col-0 -- dry PRJDB7363 9168533 0.8722 2019/1/30 DRX139790 B2_h_rep1 seedlings Col-0 -- heat PRJDB7363 11078303 0.8037 2019/1/30 DRX139796 B3_h_rep1 seedlings Col-0 -- heat PRJDB7363 14678324 0.8723 2019/1/30 DRX139802 VC_h_rep1 seedlings Col-0 -- heat PRJDB7363 22628268 0.7271 2019/1/30 DRX158876 ldl3_C14S7_1 root Col-0 ldl3 -- PRJDB7911 13246505 0.7698 2019/2/10 DRX158871 ldl3_C14_5 root Col-0 ldl3 -- PRJDB7911 15125526 0.9008 2019/2/10 DRX158873 ldl3_S1C14_1 root Col-0 ldl3 -- PRJDB7911 17548193 0.7032 2019/2/10 DRX158862 Col_C14_5 root Col-0 wild type CIM 14day PRJDB7911 11416864 0.9162 2019/2/10 DRX158858 Col_C0_1 root Col-0 wild type Mock PRJDB7911 11638394 0.8287 2019/2/10 DRX158864 Col_S1C14_1 root Col-0 wild type SIM1dayCIM14day PRJDB7911 10478910 0.8542 2019/2/10 DRX159855 rpt5a_003mMB_1 1cm long root tips Col-0 rpt5a mutant 0.03mM_boric_acid PRJDB8007 13934579 0.8977 2019/4/17 DRX159859 rpt5a_3mMB_1 1cm long root tips Col-0 rpt5a mutant 3mM_boric_acid PRJDB8007 12226913 0.8982 2019/4/17 DRX159847 Col_003mMB_1 1cm long root tips Col-0 wild type 0.03mM_boric_acid PRJDB8007 14926553 0.8976 2019/4/17 DRX159851 Col_3mMB_1 1cm long root tips Col-0 wild type 3mM_boric_acid PRJDB8007 13665409 0.8866 2019/4/17 DRX168574 low Ca lcs3 rep1 Shoot Col-0 lcs3 low Ca PRJDB8283 15961601 0.9492 2020/2/7 DRX168570 control lcs3 rep1 Shoot Col-0 lcs3 normal Ca PRJDB8283 14103009 0.9522 2020/2/7 DRX168572 low Ca Col-0 rep1 Shoot Col-0 wild type low Ca PRJDB8283 14394341 0.9439 2020/2/7 DRX168568 control Col-0 rep1 Shoot Col-0 wild type normal Ca PRJDB8283 12777223 0.932 2020/2/7 DRX174606 raf_dry5h_1 12day seedlings Col-0 raf18/20/24 dehydration 5h* PRJDB8521 11063318 0.8353 2020/3/16 DRX174607 srk2abgh_dry5h_1 12day seedlings Col-0 srk2abgh dehydration 5h* PRJDB8521 11186402 0.8244 2020/3/16 DRX174605 WT_dry5h_1 12day seedlings Col-0 wild type dehydration 5h* PRJDB8521 10076100 0.7791 2020/3/16 DRX174604 WT_NT_1 12day seedlings Col-0 wild type untreated PRJDB8521 12158043 0.8404 2020/3/16 DRX178613 hise1psat1_doubleMT_R01 leaf Col-0 hise1-3 psat1-2* -- PRJDB8535 34302129 0.9171 2020/3/19 DRX178607 hise1_MT_R01 leaf Col-0 hise1-3* -- PRJDB8535 54532041 0.9128 2020/3/19 ERX1104310 PICOT_WT_R1 seedlings Col-0 wild type -- PRJEB10937 40156250 0.8869 2017/8/10 ERX1268131 Sample 10_part 1 leaves Col-0 sid2 -- PRJEB12204 17715306 0.8713 2015/12/28 ERX1268134 Sample 11_part 1 leaves Col-0 sid2 -- PRJEB12204 19990776 0.8931 2015/12/28 ERX1268137 Sample 12_part 1 leaves Col-0 sid2 -- PRJEB12204 16004428 0.8902 2015/12/28 ERX1268161 Sample 4_part 1 leaves Col-0 sid2 -- PRJEB12204 14476734 0.8795 2015/12/28 ERX1268164 Sample 5_part 1 leaves Col-0 sid2 -- PRJEB12204 21815636 0.882 2015/12/28 ERX1268167 Sample 6_part 1 leaves Col-0 sid2 -- PRJEB12204 13789005 0.8895 2015/12/28 ERX1268147 Sample 1_part 1 leaves Col-0 wild type -- PRJEB12204 13175725 0.8856 2015/12/28 ERX1268155 Sample 2_part 1 leaves Col-0 wild type -- PRJEB12204 13135193 0.8749 2015/12/28 ERX1268158 Sample 3_part 1 leaves Col-0 wild type -- PRJEB12204 19795598 0.8917 2015/12/28 ERX1268170 Sample 7_part 1 leaves Col-0 wild type -- PRJEB12204 14145346 0.8489 2015/12/28 ERX1268173 Sample 8_part 1 leaves Col-0 wild type -- PRJEB12204 12057476 0.8902 2015/12/28 ERX1268176 Sample 9_part 1 leaves Col-0 wild type -- PRJEB12204 14762757 0.8985 2015/12/28 ERX1366475 E-MTAB-4508:Col-0_T2 leaves Col-0 -- -- PRJEB12877 18678371 0.9025 2017/12/15 ERX1409523 Sample 25 seedlings Col-0 Col-0 WT pX6-3xHA-AGO1 -- PRJEB13163 20867735 0.907 2016/9/28 ERX1409543 Sample 43 seedlings Col-0 ago1-3 FLAG-AGO1D762A -- PRJEB13163 12811922 0.8905 2016/9/28 ERX1409534 Sample 35 seedlings Col-0 ago1-3 FLAG-AGO1D762A pX6-3xHA-AGO1 -- PRJEB13163 21418570 0.9031 2016/9/28 ERX1409532 Sample 33 seedlings Col-0 ago1-3 FLAG-AGO1E803A pX6-3xHA-AGO1 -- PRJEB13163 24724056 0.8808 2016/9/28 ERX1409530 Sample 31 seedlings Col-0 ago1-3 FLAG-AGO1H988F pX6-3xHA-AGO1 -- PRJEB13163 24606169 0.9034 2016/9/28 ERX1409527 Sample 29 seedlings Col-0 ago1-3 FLAG-AGO1WT pX6-3xHA-AGO1 -- PRJEB13163 20838064 0.8853 2016/9/28 ERX1409525 Sample 27 seedlings Col-0 ago1-3 pX6-3xHA-AGO1 -- PRJEB13163 22587946 0.9033 2016/9/28 ERX1517446 Sample 10 rosette leaf Col-0 atphb3 ANAC017 -- PRJEB14313 19766568 0.7904 2016/7/29 ERX1517449 Sample 13 rosette leaf Col-0 atphb3 anac017 -- PRJEB14313 18664155 0.8 2016/7/29 ERX1517454 Sample 4 rosette leaf Col-0 rpotmp ANAC017 -- PRJEB14313 19662882 0.792 2016/7/29 ERX1517457 Sample 7 rosette leaf Col-0 rpotmp anac017 -- PRJEB14313 24121194 0.8031 2016/7/29 ERX1517452 Sample 2 rosette leaf Col-0 wild type -- PRJEB14313 20844176 0.737 2016/7/29 ERX1648936 E-MTAB-5001:grxs17-1_R1 seedlings Col-0 -- -- PRJEB15107 43905385 0.8775 2018/1/4 ERX1735532 E-MTAB-5132:Sample 10 seedling Col-0 wild type -- PRJEB15579 111062395 0.7388 2019/9/3 ERX1735534 E-MTAB-5132:Sample 12 seedling Col-0 xrn3-8 mutant -- PRJEB15579 98590089 0.7014 2019/9/3 ERX1874916 E-MTAB-5446:Sample 2 whole plant Col-0 wild type -- PRJEB19242 95035353 0.7754 2019/2/14 ERX1936700 ETT rep1 inflorescence Col-0 ETT -- PRJEB19862 16890053 0.9329 2017/3/14 ERX1936703 ETT +IAA rep1 inflorescence Col-0 ETT + IAA -- PRJEB19862 17080886 0.9125 2017/3/14 ERX1936694 Wild-type Col-0 rep1 inflorescence Col-0 wild type Mock PRJEB19862 18264705 0.9467 2017/3/14 ERX1936697 Wild-type Col-0 +IAA rep1 inflorescence Col-0 wild type +IAA IAA PRJEB19862 18455774 0.9456 2017/3/14 ERX2055381 E-MTAB-5788:Sample 9 inflorescence Col-0 35S:HWS overexpressor -- PRJEB21133 12002479 0.7185 2017/11/3 ERX2055375 E-MTAB-5788:Sample 3 inflorescence Col-0 hws-1 mutant -- PRJEB21133 13640037 0.8098 2017/11/3 ERX2055377 E-MTAB-5788:Sample 5 inflorescence Col-0 hws-3 mutant -- PRJEB21133 13325015 0.7752 2017/11/3 ERX2055373 E-MTAB-5788:Sample 1 inflorescence Col-0 wild type -- PRJEB21133 12837684 0.8039 2017/11/3 ERX2244584 E-MTAB-6170:Sample 3 siliques Col-0 AtBUD13 heterozygous knockout -- PRJEB23283 43414066 0.9181 2017/11/14 ERX2244582 E-MTAB-6170:Sample 1 siliques Col-0 wild type -- PRJEB23283 43184671 0.9205 2017/11/14 ERX2297585 Col0-9-days-23C-rep1 seedlings Col-0 -- Mock PRJEB24412 46920425 0.9512 2018/5/3 ERX2297600 col0-12-days-23C-expA-rep1 seedlings Col-0 -- Mock PRJEB24412 32686739 0.8286 2018/5/3 ERX2297591 col0-9-days-23C+3-days-16C-expA-rep1 seedlings Col-0 -- cold16 3day PRJEB24412 23137550 0.8193 2018/5/3 ERX2297594 col0-9-days-23C+3-days-16C-rep1 seedlings Col-0 -- cold16 3day PRJEB24412 72150164 0.9538 2018/5/3 ERX2297582 Col0-9-days-16C-rep1 seedlings Col-0 -- cold16 9day PRJEB24412 55363396 0.9477 2018/5/3 ERX2297588 col0-9-days-16C+3-days-23C-rep1 seedlings Col-0 -- recovery 3day aHter cold16 9day PRJEB24412 42340804 0.9412 2018/5/3 ERX2297597 col0-9-days-23C+3-days-27C-expA-rep1 seedlings Col-0 -- recovery 3day aHter cold16 9day PRJEB24412 23239503 0.8493 2018/5/3 ERX2297608 pcp-9-days-23C+3-days-16C-rep1 seedlings Col-0 pcp -- PRJEB24412 50307767 0.9519 2018/5/3 ERX2297611 pcp-9days-16C-rep1 seedlings Col-0 pcp -- PRJEB24412 54491682 0.8491 2018/5/3 ERX2297614 pcp-9days-23C-rep1 seedlings Col-0 pcp -- PRJEB24412 49287105 0.9447 2018/5/3 ERX2338277 T0 in fd-2 apices biorep1 apices Col-0 fd-2 -- PRJEB24873 45580969 0.8364 2019/2/26 ERX2338283 T1 in fd-2 apices biorep1 apices Col-0 fd-2 -- PRJEB24873 44000055 0.8405 2019/2/26 ERX2338289 T2 in fd-2 apices biorep1 apices Col-0 fd-2 -- PRJEB24873 35992533 0.7181 2019/2/26 ERX2338280 T0 pFD::GFP:FD in fd-2 apices biorep1 apices Col-0 pFD::GFP:FD -- PRJEB24873 40394140 0.8218 2019/2/26 ERX2338286 T1 pFD::GFP:FD in fd-2 apices biorep1 apices Col-0 pFD::GFP:FD -- PRJEB24873 37968788 0.7834 2019/2/26 ERX2338292 T2 pFD::GFP:FD in fd-2 apices biorep1 apices Col-0 pFD::GFP:FD -- PRJEB24873 35336645 0.8352 2019/2/26 ERX2338298 T3 pFD::GFP:FD in fd-2 apices biorep1 apices Col-0 pFD::GFP:FD -- PRJEB24873 36381467 0.7566 2019/2/26 ERX2338304 T5 pFD::GFP:FD in fd-2 apices biorep1 apices Col-0 pFD::GFP:FD -- PRJEB24873 31501019 0.7868 2019/2/26 ERX2612804 148-mock-48-1 leaves Col-0 -- Mock PRJEB26953 31319179 0.9332 2019/1/24 ERX2612807 148-mock-72-1 leaves Col-0 -- Mock PRJEB26953 25915727 0.9713 2019/1/24 ERX2612816 193-mock-48-1 leaves Col-0 -- Mock PRJEB26953 28839135 0.9636 2019/1/24 ERX2612819 193-mock-72-1 leaves Col-0 -- Mock PRJEB26953 27752465 0.9628 2019/1/24 ERX2612828 454-mock-48-1 leaves Col-0 -- Mock PRJEB26953 26432569 0.9677 2019/1/24 ERX2612831 454-mock-72-1 leaves Col-0 -- Mock PRJEB26953 27521024 0.9699 2019/1/24 ERX2612840 508-mock-48-1 leaves Col-0 -- Mock PRJEB26953 24507418 0.9718 2019/1/24 ERX2612843 508-mock-72-1 leaves Col-0 -- Mock PRJEB26953 26178632 0.9708 2019/1/24 ERX2612852 C602-mock-48-1 leaves Col-0 -- Mock PRJEB26953 29280300 0.9464 2019/1/24 ERX2612855 C602-mock-72-1 leaves Col-0 -- Mock PRJEB26953 29196701 0.9609 2019/1/24 ERX2612798 148-hpa-48-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 47720164 0.9668 2019/1/24 ERX2612801 148-hpa-72-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 47474846 0.9325 2019/1/24 ERX2612810 193-hpa-48-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 35074227 0.9621 2019/1/24 ERX2612813 193-hpa-72-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 42440547 0.9341 2019/1/24 ERX2612822 454-hpa-48-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 50734581 0.9625 2019/1/24 ERX2612825 454-hpa-72-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 40857417 0.9441 2019/1/24 ERX2612834 508-hpa-48-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 52538156 0.9388 2019/1/24 ERX2612837 508-hpa-72-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 49503121 0.8945 2019/1/24 ERX2612846 C602-hpa-48-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 42927748 0.9652 2019/1/24 ERX2612849 C602-hpa-72-1 leaves Col-0 -- inoculated with Hpa* PRJEB26953 37639383 0.9 2019/1/24 ERX2702590 control_1 leaves Col-0 -- Mock PRJEB27682 18284424 0.9304 2018/12/2 ERX2702587 drought_1 leaves Col-0 -- dry PRJEB27682 23731035 0.928 2018/12/2 ERX2729242 pae9-2_4hpi_1_1 rosette Col-0 pae9-2 4h post inHestation PRJEB27944 15315972 0.8908 2019/10/9 ERX2729244 pae9-2_4hpi_2_1 rosette Col-0 pae9-2 4h post inHestation PRJEB27944 13137789 0.8654 2019/10/9 ERX2729246 pae9-2_4hpi_3_1 rosette Col-0 pae9-2 4h post inHestation PRJEB27944 15429609 0.8872 2019/10/9 ERX2729248 pae9-2_8hpi_1_1 rosette Col-0 pae9-2 8h post inHestation PRJEB27944 15122569 0.8578 2019/10/9 ERX2729250 pae9-2_8hpi_2_1 rosette Col-0 pae9-2 8h post inHestation PRJEB27944 17103896 0.8566 2019/10/9 ERX2729252 pae9-2_8hpi_3_1 rosette Col-0 pae9-2 8h post inHestation PRJEB27944 15562929 0.8456 2019/10/9 ERX2729254 pae9-2_c_1_1 rosette Col-0 pae9-2 control PRJEB27944 16778181 0.895 2019/10/9 ERX2729256 pae9-2_c_2_1 rosette Col-0 pae9-2 control PRJEB27944 16300278 0.886 2019/10/9 ERX2729258 pae9-2_c_3_1 rosette Col-0 pae9-2 control PRJEB27944 17481008 0.903 2019/10/9 ERX2729224 Col-0_4hpi_1_1 rosette Col-0 wild type 4h post inHestation PRJEB27944 15514847 0.8958 2019/10/9 ERX2729226 Col-0_4hpi_2_1 rosette Col-0 wild type 4h post inHestation PRJEB27944 16400439 0.8801 2019/10/9 ERX2729228 Col-0_4hpi_3_1 rosette Col-0 wild type 4h post inHestation PRJEB27944 15965631 0.8656 2019/10/9 ERX2729230 Col-0_8hpi_1_1 rosette Col-0 wild type 8h post inHestation PRJEB27944 14262357 0.8856 2019/10/9 ERX2729232 Col-0_8hpi_2_1 rosette Col-0 wild type 8h post inHestation PRJEB27944 14466906 0.868 2019/10/9 ERX2729234 Col-0_8hpi_3_1 rosette Col-0 wild type 8h post inHestation PRJEB27944 16932135 0.8736 2019/10/9 ERX2729236 Col-0_c_1_1 rosette Col-0 wild type control PRJEB27944 13935017 0.9035 2019/10/9 ERX2729238 Col-0_c_2_1 rosette Col-0 wild type control PRJEB27944 19191778 0.8966 2019/10/9 ERX2729240 Col-0_c_3_1 rosette Col-0 wild type control PRJEB27944 16831209 0.8997 2019/10/9 ERX3198055 hyl1-2-mRNA-dark-23-1 seedlings Col-0 hyl1-2 -- PRJEB28610 17124648 0.8541 2019/2/26 ERX3139138 E-MTAB-7609:Col-1h-1 root Col-0 wild type MB3_wounding 1h PRJEB30870 14582382 0.8866 2019/11/30 ERX3139141 E-MTAB-7609:Col-3h-1 root Col-0 wild type MB3_wounding 3h PRJEB30870 14618971 0.8786 2019/11/30 ERX3139144 E-MTAB-7609:Col-6h-1 root Col-0 wild type MB3_wounding 6h PRJEB30870 10647854 0.8538 2019/11/30 ERX3139132 E-MTAB-7609:Col-0h-1 root Col-0 wild type control PRJEB30870 14348300 0.876 2019/11/30 ERX3139135 E-MTAB-7609:Col-12h-1 root Col-0 wild type wounding 12h PRJEB30870 12133156 0.8806 2019/11/30 ERX3140330 E-MTAB-7612:DMSO_0h_1 root Col-0 wild type DMSO PRJEB30899 12846890 0.82 2019/11/30 ERX3140333 E-MTAB-7612:DMSO_1h_1 root Col-0 wild type DMSO_wounding 1h PRJEB30899 14308193 0.8215 2019/11/30 ERX3140336 E-MTAB-7612:DMSO_3h_1 root Col-0 wild type DMSO_wounding 3h PRJEB30899 14560746 0.7981 2019/11/30 ERX3140339 E-MTAB-7612:DMSO_6h_1 root Col-0 wild type DMSO_wounding 6h PRJEB30899 13293767 0.8495 2019/11/30 ERX3140342 E-MTAB-7612:MB3_0h_1 root Col-0 wild type MB3 PRJEB30899 12168124 0.8504 2019/11/30 ERX3140345 E-MTAB-7612:MB3_1h_1 root Col-0 wild type MB3_wounding 1h PRJEB30899 14295236 0.8689 2019/11/30 ERX3140348 E-MTAB-7612:MB3_3h_1 root Col-0 wild type MB3_wounding 3h PRJEB30899 12202657 0.8641 2019/11/30 ERX3140351 E-MTAB-7612:MB3_6h_1 root Col-0 wild type MB3_wounding 6h PRJEB30899 14282202 0.8657 2019/11/30 ERX3507592 VIRc_illumina_polyA_1 -- Col-0 VIRc* -- PRJEB32782 31005770 0.8956 2019/12/19 ERX3511341 hen2-2_illumina_ribominus_1 -- Col-0 hen2-2* -- PRJEB32782 124499746 0.7432 2019/12/19 ERX3511336 col0_illumina_ribominus_3 -- Col-0 wild type -- PRJEB32782 120233914 0.7544 2019/12/19 ERX3374725 E-MTAB-8019:myc234 25 min touch rep 1 whole organism Col-0 myc234 25min touch PRJEB32871 29368340 0.8321 2019/10/30 ERX3374732 E-MTAB-8019:myc234 untreated rep 1 whole organism Col-0 myc234 untreated PRJEB32871 33087598 0.84 2019/10/30 ERX3374722 E-MTAB-8019:Col-0 25 min touch rep 1 whole organism Col-0 wild type 25min touch PRJEB32871 28590525 0.825 2019/10/30 ERX3374729 E-MTAB-8019:Col-0 untreated rep 1 whole organism Col-0 wild type untreated PRJEB32871 47008543 0.8161 2019/10/30 ERX3390233 E-MTAB-8021:Touch 10 min rep 1 whole organism Col-0 myc2 pMYC2:MYC2-FLAG 10min touch* PRJEB32957 28295293 0.8372 2019/10/30 ERX3390237 E-MTAB-8021:Touch 180 min rep 1 whole organism Col-0 myc2 pMYC2:MYC2-FLAG 180min touch* PRJEB32957 23431174 0.8491 2019/10/30 ERX3390241 E-MTAB-8021:Touch 25 min rep 1 whole organism Col-0 myc2 pMYC2:MYC2-FLAG 25min touch* PRJEB32957 23576004 0.8341 2019/10/30 ERX3390245 E-MTAB-8021:Touch 40 min rep 1 whole organism Col-0 myc2 pMYC2:MYC2-FLAG 40min touch* PRJEB32957 25319990 0.8371 2019/10/30 ERX3390249 E-MTAB-8021:Touch 60 min rep 1 whole organism Col-0 myc2 pMYC2:MYC2-FLAG 60min touch* PRJEB32957 20894937 0.8495 2019/10/30 ERX3390253 E-MTAB-8021:Untouched rep 1 whole organism Col-0 myc2 pMYC2:MYC2-FLAG untouched PRJEB32957 20651171 0.839 2019/10/30 ERX3674697 RNAseq3_mail1-1_rep1 leaf Col-0 mail1-1 -- PRJEB33240 37527658 0.8579 2019/11/27 ERX3674727 RNAseq3_mail1-1-pp7l-2_rep1 leaf Col-0 mail1-1-pp7l-2 -- PRJEB33240 30011873 0.8646 2019/11/27 ERX3674731 RNAseq3_main-2_rep1 leaf Col-0 main-2 -- PRJEB33240 27810308 0.8818 2019/11/27 ERX3674723 RNAseq3_pp7l-2_rep1 leaf Col-0 pp7l-2 -- PRJEB33240 26181645 0.882 2019/11/27 ERX3674685 RNAseq3_Col1_rep1 leaf Col-0 wild type -- PRJEB33240 29253874 0.8724 2019/11/27 ERX3467492 E-MTAB-8157:nrf1-2_-Fe_root_replicate_1 root Col-0 nrf1-2 mutant iron deHiciency PRJEB33596 51513197 0.8824 2020/1/9 ERX3467490 E-MTAB-8157:nrf1-2_+Fe_root_replicate_1 root Col-0 nrf1-2 mutant iron suHHiciency PRJEB33596 48509529 0.8689 2020/1/9 ERX3467496 E-MTAB-8157:WT_-Fe_root_replicate_1 root Col-0 wild type iron deHiciency PRJEB33596 49170834 0.8436 2020/1/9 ERX3467494 E-MTAB-8157:WT_+Fe_root_replicate_1 root Col-0 wild type iron suHHiciency PRJEB33596 49931830 0.881 2020/1/9 ERX350053 At35S_RPL18_1 leaves Col-0 CaMV35S:FLAG::RPL18 -- PRJEB5030 33836528 0.8031 2014/3/3 ERX350056 AtGDC_RPL18_1 leaves Col-0 FtGDC::FLAG::RPL18 -- PRJEB5030 36977196 0.7597 2014/3/3 ERX570530 rtel1_3 root tip Col-0 rtel1-1 -- PRJEB7299 8112416 0.8685 2016/9/28 ERX570532 Col_0_2 root tip Col-0 wild type -- PRJEB7299 7023947 0.8537 2016/9/28 ERX940520 mRNA.APO_1 seedlings Col-0 -- APO PRJEB8886 11728035 0.8902 2015/10/21 ERX940532 mRNA.CONTROL_1 seedlings Col-0 -- Mock PRJEB8886 7561528 0.8966 2015/10/21 ERX940528 mRNA.SAHA_1 seedlings Col-0 -- SAHA PRJEB8886 11015406 0.8934 2015/10/21 ERX940524 mRNA.TSA_1 seedlings Col-0 -- TSA PRJEB8886 12177042 0.8928 2015/10/21 ERX2405550 RNA-seq-lhp1-R2 seedlings Col-0 lhp1-3 -- PRJEB8944 10388935 0.8612 2018/3/1 ERX2405540 RNA-seq-trb1-R1 seedlings Col-0 trb1-1 -- PRJEB8944 12429210 0.8547 2018/3/1 ERX2405552 RNA-seq-trb1-lhp1-R1 seedlings Col-0 trb1-1 lhp1-3 -- PRJEB8944 10435579 0.7395 2018/3/1 ERX2405547 RNA-seq-trb1-trb3-R2 seedlings Col-0 trb1-1 trb3-1 -- PRJEB8944 11653420 0.8478 2018/3/1 ERX2405558 RNA-seq-trb1-trb3-lhp1-R1 seedlings Col-0 trb1-1 trb3-1 lhp1-3 -- PRJEB8944 13697330 0.78 2018/3/1 ERX2405543 RNA-seq-trb3-R1 seedlings Col-0 trb3-1 -- PRJEB8944 9683529 0.8479 2018/3/1 ERX2405556 RNA-seq-trb3-lhp1-R2 seedlings Col-0 trb3-1 lhp1-3 -- PRJEB8944 12208166 0.7674 2018/3/1 ERX2405537 RNA-seq-Col-0-R1 seedlings Col-0 wild type -- PRJEB8944 11796446 0.8456 2018/3/1 ERX981475 Col-0_biological_replicate_1 whole plant Col-0 wild type -- PRJEB9470 12251921 0.9397 2015/8/29 ERX1043128 met1-3_mRNAseq_rep2 leaves Col-0 met1-3 mutant -- PRJEB9919 14328071 0.9316 2015/7/23 ERX1043133 met1-3xCol-0_mRNAseq_rep1 leaves Col-0 met1-3 mutant x wild type -- PRJEB9919 7792900 0.9409 2015/7/23 ERX1043124 Col-0_mRNAseq_rep1 leaves Col-0 wild type -- PRJEB9919 10710447 0.9477 2015/7/23 ERX1043130 Col-0xmet1-3_mRNAseq_rep1 leaves Col-0 wild type x met1-3 mutant -- PRJEB9919 8597602 0.9422 2015/7/23 GSM800621 wild-type replicate 1 seedlings Col-0 -- -- PRJNA147283 20136800 0.8856 2011/9/26 GSM797873 wei8tar2_MS_RNASeq_Rep#1 seedlings Col-0 wei8-/- tar2+/- -- PRJNA147389 15500456 0.7461 2014/12/22 GSM797871 Col_Kyn_RNASeq_Rep#1 seedlings Col-0 wild type Kynurenine PRJNA147389 16851910 0.7358 2014/12/22 GSM847337 WT-Flower-RNAseq-1 flower Col-0 wild type -- PRJNA151473 9054068 0.916 2012/7/6 GSM847334 WT-Seedling-RNAseq-1 seedlings Col-0 wild type -- PRJNA151473 7390477 0.9115 2012/7/6 GSM865212 mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1 flower receptacles Col-0 Wild Type -- PRJNA151589 34197806 0.7922 2013/1/15 GSM865215 mRNA from Arabidopsis Col-0 hae-3 hsl2-3 stage 15 flower receptacles 1 flower receptacles Col-0 hae-3 hsl2-3 mutant -- PRJNA151589 32803831 0.7907 2013/1/15 GSM762078 col_0_seedling_br1 seedlings Col-0 -- -- PRJNA154687 6541414 0.7701 2011/8/30 GSM762070 col_0_seedling_tr1 seedlings Col-0 -- -- PRJNA154687 5508716 0.7804 2011/8/30 GSM912636 bzr1-1D RNA-Seq replicate 1 seedlings Col-0 bzr1-1D mutant -- PRJNA158647 11216092 0.8812 2012/7/9 GSM912638 pifq RNA-Seq replicate 1 seedlings Col-0 pifq (a quadruple mutant lacking PIF1, 3, 4, and 5) -- PRJNA158647 10890270 0.8902 2012/7/9 GSM912640 pifq;bzr1-1D RNA-Seq replicate 1 seedlings Col-0 pifq;bzr1-1D mutant -- PRJNA158647 11896534 0.8798 2012/7/9 GSM912634 Col-0 RNA-Seq replicate 1 seedlings Col-0 wild type -- PRJNA158647 13570839 0.8902 2012/7/9 GSM951355 rve8_DEX_1 seedlings Col-0 rve8-1 dexamethasone PRJNA169134 19437255 0.8826 2013/4/17 GSM951358 rve8_mock_1 seedlings Col-0 rve8-1 mock PRJNA169134 17108834 0.8869 2013/4/17 GSM951349 RVE8:GR_DEX_1 seedlings Col-0 rve8-1 RVE8 dexamethasone PRJNA169134 22812528 0.8815 2013/4/17 GSM951352 RVE8:GR_mock_1 seedlings Col-0 rve8-1 RVE8 mock PRJNA169134 21228984 0.8776 2013/4/17 GSM969708 The triple mutant (pen2 pad4 sag101) challenged with Bgh A6 isolate at 24hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant -- PRJNA171012 27660332 0.7291 2012/11/23 GSM969702 The triple mutant (pen2 pad4 sag101) challenged with Bgh K1 isolate at 18hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant -- PRJNA171012 36566208 0.783 2012/11/23 GSM969705 The triple mutant (pen2 pad4 sag101) challenged with Bgh K1 isolate at 24hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant -- PRJNA171012 43898259 0.7776 2012/11/23 GSM969678 MLA1 expressing plants challenged with Bgh A6 isolate at 24hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant expressing MLA1-HA -- PRJNA171012 35597987 0.7585 2012/11/23 GSM969663 MLA1 expressing plants challenged with Bgh A6 isolate at 6hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant expressing MLA1-HA -- PRJNA171012 48091464 0.7079 2012/11/23 GSM969684 MLA1 expressing plants challenged with Bgh K1 isolate at 24hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant expressing MLA1-HA -- PRJNA171012 32145002 0.7644 2012/11/23 GSM969666 MLA1 expressing plants challenged with Bgh K1 isolate at 6hpi, replicate 1 leaves Col-0 pen2-1 pad4-1 sag101-2 mutant expressing MLA1-HA -- PRJNA171012 90263755 0.8036 2012/11/23 GSM988490 35S:RPS4, 4h, rep1 leaves Col-0 35S:RPS4-HS -- PRJNA173214 27139948 0.9089 2017/9/4 GSM988493 35S:RPS4, 8h, rep1 leaves Col-0 35S:RPS4-HS -- PRJNA173214 29042494 0.8764 2017/9/4 GSM988487 35S:RPS4, T0, rep1 leaves Col-0 35S:RPS4-HS -- PRJNA173214 37384089 0.8704 2017/9/4 GSM988496 Col-0, T0, rep1 leaves Col-0 wild type Mock PRJNA173214 31818102 0.9201 2017/9/4 GSM988499 Col-0, 4h, rep1 leaves Col-0 wild type shiHt Hrom 28°C to 19°C Hor 4h* PRJNA173214 30972007 0.8796 2017/9/4 GSM988502 Col-0, 8h, rep1 leaves Col-0 wild type shiHt Hrom 28°C to 19°C Hor 8h* PRJNA173214 30578524 0.9028 2017/9/4 GSM1023755 IBH1-Ox 1 seedlings Col-0 35S -- PRJNA178143 19520198 0.8227 2015/7/22 GSM1023757 PRE1-Ox/IBH1-Ox 1 seedlings Col-0 35S -- PRJNA178143 12016738 0.8981 2015/7/22 GSM1023753 Col 1 seedlings Col-0 Wild type -- PRJNA178143 19314684 0.8282 2015/7/22 GSM1025549 mos2-2 rep1 seedlings Col-0 mos2-2 -- PRJNA178309 8184112 0.7535 2015/7/22 GSM1054090 BP12-2 seedling treated with rapamycin_rep1 seedlings Col-0 BP12-2 10 碌g/ml rapamycin PRJNA183972 17202520 0.9154 2012/12/19 GSM1054087 Col WT seedling treated with rapamycin_rep1 seedlings Col-0 wild type 10 碌g/ml rapamycin PRJNA183972 14555046 0.9152 2012/12/19 GSM1723718 totalRNA10-1 leaves Col-0 -- -- PRJNA186843 24833793 0.9521 2016/3/16 GSM1723719 totalRNA12-1 leaves Col-0 -- -- PRJNA186843 27557119 0.9525 2016/3/16 GSM1723720 totalRNA14-1 leaves Col-0 -- -- PRJNA186843 26479075 0.9519 2016/3/16 GSM1723721 totalRNA16-1 leaves Col-0 -- -- PRJNA186843 29176389 0.9523 2016/3/16 GSM1723722 totalRNA18-1 leaves Col-0 -- -- PRJNA186843 24271577 0.95 2016/3/16 GSM1723723 totalRNA20-1 leaves Col-0 -- -- PRJNA186843 24602714 0.9463 2016/3/16 GSM1723724 totalRNA22-1 leaves Col-0 -- -- PRJNA186843 20905305 0.9398 2016/3/16 GSM1723725 totalRNA24-1 leaves Col-0 -- -- PRJNA186843 28063496 0.9411 2016/3/16 GSM1723726 totalRNA26-1 leaves Col-0 -- -- PRJNA186843 24151881 0.9211 2016/3/16 GSM1723727 totalRNA28-1 leaves Col-0 -- -- PRJNA186843 25982987 0.8982 2016/3/16 GSM1723728 totalRNA30-1 leaves Col-0 -- -- PRJNA186843 21839182 0.9032 2016/3/16 GSM1723716 totalRNA6-1 leaves Col-0 -- -- PRJNA186843 27988702 0.9485 2016/3/16 GSM1723717 totalRNA8-1 leaves Col-0 -- -- PRJNA186843 25226025 0.9507 2016/3/16 GSM1072464 LL, WT rep 1 seedlings Col-0 Wild type -- PRJNA188075 14103699 0.9076 2013/8/2 GSM1072485 Long days WT, ZT22, rep 1 seedlings Col-0 Wild type Mock PRJNA188075 13408078 0.7913 2013/8/2 GSM1072476 Long days WT, ZT10, rep 1 seedlings Col-0 Wild type photoperiod ZT10 VS ZT22 PRJNA188075 11164888 0.9151 2013/8/2 GSM1072479 Long days WT, ZT14, rep 1 seedlings Col-0 Wild type photoperiod ZT14 VS ZT22 PRJNA188075 10111496 0.9042 2013/8/2 GSM1072482 Long days WT, ZT18, rep 1 seedlings Col-0 Wild type photoperiod ZT18 VS ZT22 PRJNA188075 10962505 0.9129 2013/8/2 GSM1072470 Long days WT, ZT2, rep 1 seedlings Col-0 Wild type photoperiod ZT2 VS ZT22 PRJNA188075 10641335 0.9106 2013/8/2 GSM1072473 Long days WT, ZT6, rep 1 seedlings Col-0 Wild type photoperiod ZT6 VS ZT22 PRJNA188075 12254194 0.8983 2013/8/2 GSM1072467 LL, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 18297931 0.908 2013/8/2 GSM1072494 Long days LL, ZT10, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 10807757 0.7837 2013/8/2 GSM1072497 Long days LL, ZT14, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 9176985 0.7745 2013/8/2 GSM1072500 Long days LL, ZT18, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 9688046 0.7835 2013/8/2 GSM1072488 Long days LL, ZT2, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 13364290 0.7907 2013/8/2 GSM1072503 Long days LL, ZT22, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 10177235 0.8866 2013/8/2 GSM1072491 Long days LL, ZT6, rep 1 seedlings Col-0 link1link2 double mutants -- PRJNA188075 10202158 0.9083 2013/8/2 SRX264547 CntrlBR4 leaves Col-0 -- -- PRJNA189788 23603349 0.912 2013/7/19 SRX255194 C1 seedlings Col-0 -- Mock PRJNA194426 52743730 0.8705 2014/3/26 SRX255197 BA1 seedlings Col-0 -- benzyladenine PRJNA194426 15374126 0.9278 2014/3/26 SRX275911 Seedling1 seedlings Col-0 -- -- PRJNA194429 24660563 0.7737 2015/7/22 GSM1173204 ATH1_WS_S1_rep1 rosette leaf Col-0 WS Hirst dehydration PRJNA209324 36614842 0.8619 2015/7/22 GSM1173202 ATH1_WS_water_rep1 rosette leaf Col-0 WS Mock PRJNA209324 24832092 0.823 2014/1/2 GSM1173206 ATH1_WS_S3_rep1 rosette leaf Col-0 WS third dehydration PRJNA209324 37706035 0.8577 2015/7/22 GSM1239087 Col #1 seedlings Col-0 +/+ -- PRJNA221230 8489456 0.7493 2014/3/5 GSM1239079 IBH1 overexpression #1 seedlings Col-0 IBH1OE/IBH1OE -- PRJNA221230 14964452 0.7046 2014/3/5 GSM1239083 IBL1 overexpression #1 seedlings Col-0 IBL1OE/IBL1OE -- PRJNA221230 22545406 0.7524 2014/3/5 GSM1239081 ibh1 mutant #1 seedlings Col-0 ibh1-/ibh1- -- PRJNA221230 13653860 0.7167 2014/3/5 GSM1239085 ibl1 mutant #1 seedlings Col-0 ibl1-/ibl1- -- PRJNA221230 13767983 0.7224 2014/3/5 GSM1242378 cmt2_mRNA_rep1 leaves Col-0 cmt2 -- PRJNA222364 9230738 0.8177 2013/12/16 GSM1242382 cmt23_mRNA_rep1 leaves Col-0 cmt23 -- PRJNA222364 8024600 0.8209 2013/12/16 GSM1242380 cmt3_mRNA_rep1 leaves Col-0 cmt3 -- PRJNA222364 7841996 0.8211 2013/12/16 GSM1242376 drm12_mRNA_rep1 leaves Col-0 drm12 -- PRJNA222364 8319417 0.8177 2013/12/16 GSM1242384 drm12cmt2_mRNA_rep1 leaves Col-0 drm12cmt2 -- PRJNA222364 10944845 0.8161 2013/12/16 GSM1242388 drm12cmt23_mRNA_rep1 leaves Col-0 drm12cmt23 -- PRJNA222364 10886072 0.835 2013/12/16 GSM1242386 drm12cmt3_mRNA_rep1 leaves Col-0 drm12cmt3 -- PRJNA222364 9207622 0.8208 2013/12/16 GSM1242390 suvh456_mRNA_rep1 leaves Col-0 suvh456 -- PRJNA222364 6623618 0.8102 2013/12/16 GSM1242374 WT_mRNA_rep1 leaves Col-0 wild type -- PRJNA222364 7146639 0.8139 2013/12/16 SRX365738 rd26ko-1 whole plant Col-0 rd26ko -- PRJNA223275 15182950 0.8792 2014/10/4 SRX365743 rd26ox-2 whole plant Col-0 rd26ox -- PRJNA223275 10463987 0.8683 2014/10/4 SRX365725 col-1 whole plant Col-0 wild type -- PRJNA223275 18108555 0.8792 2014/10/4 GSM1252268 iaa3 + BR RNA-Seq replicate 1 seedlings Col-0 -- -- PRJNA225010 20276617 0.8441 2014/6/3 GSM1252266 iaa3 RNA-Seq replicate 1 seedlings Col-0 -- -- PRJNA225010 25755168 0.8475 2014/6/3 GSM1252264 Col-0 + BR RNA-Seq replicate 1 seedlings Col-0 -- BR PRJNA225010 25438492 0.8505 2014/6/3 GSM1252262 Col-0 RNA-Seq rep 1 seedlings Col-0 wild type Mock PRJNA225010 23449026 0.8435 2014/6/3 GSM1279542 bri1-116 rep1 root Col-0 bri1-116 mutant untreated PRJNA230565 28906759 0.8732 2015/4/30 GSM1279544 bri1-116;bzr1-1D rep1 root Col-0 bri1-116;bzr1-1D mutant untreated PRJNA230565 14910550 0.8693 2015/4/30 GSM1279550 dwf4 BL 4hr rep1 root Col-0 dwf4 mutant 100 nM BL, 4 hr PRJNA230565 14101718 0.8182 2015/7/22 GSM1279548 dwf4 rep1 root Col-0 dwf4 mutant untreated PRJNA230565 13765385 0.8179 2015/7/22 GSM1279536 Col BL 4hr rep1 root Col-0 wild type BL 4h PRJNA230565 25153807 0.8614 2015/4/30 GSM1279538 Col IAA 4hr rep1 root Col-0 wild type IAA 4h PRJNA230565 40845455 0.8665 2015/4/30 GSM1279540 Col IAA+BL 4hr rep1 root Col-0 wild type IAA+BL 4h PRJNA230565 24227829 0.8654 2015/4/30 GSM1279534 Col mock rep1 root Col-0 wild type Mock PRJNA230565 26836208 0.8626 2015/4/30 GSM1279546 WT rep1 root Col-0 wild type untreated PRJNA230565 14172032 0.8156 2015/7/22 GSM1298726 FB1 flower bud Col-0 wild type -- PRJNA232621 32033455 0.9544 2015/7/22 GSM1298730 L1 leaves Col-0 wild type -- PRJNA232621 33238261 0.9432 2015/7/22 SRX424585 med5a/5b 1 rosette leaf Col-0 med5a/5b -- PRJNA234023 30799731 0.941 2014/5/9 SRX424588 med5a/5b ref8-1 1 rosette leaf Col-0 med5a/5b ref8-1 -- PRJNA234023 25486161 0.9285 2014/5/9 SRX424582 ref8-1 1 rosette leaf Col-0 ref8-1 -- PRJNA234023 30035910 0.9501 2014/5/9 SRX424462 wild type 1 rosette leaf Col-0 wild type -- PRJNA234023 23923750 0.928 2014/5/9 GSM1347943 pad4 rep1 leaves Col-0 pad4-1 -- PRJNA241198 56001431 0.786 2014/9/10 GSM1347946 smg7 pad4 rep 1 leaves Col-0 smg7-1 pad4-1 -- PRJNA241198 52740566 0.7899 2014/9/10 SRX525652 P+_hps7_R1 root Col-0 hps7 P+ PRJNA242702 55817073 0.7708 2014/7/8 SRX501696 P-_WT_R1 root Col-0 wild type Pi starvation PRJNA242702 37410954 0.8363 2014/7/8 GSM1359151 35S:NGA 1 carpels Col-0 -- -- PRJNA242915 27432608 0.9005 2014/8/1 GSM1359146 WT 1 carpels Col-0 -- -- PRJNA242915 42903956 0.9009 2014/8/1 GSM1359148 nga 1 carpels Col-0 -- -- PRJNA242915 36624301 0.8946 2014/8/1 GSM1369673 miP1a_1 leaves Col-0 35S -- PRJNA244662 12088309 0.9353 2016/3/8 GSM1369675 miP1b_1 leaves Col-0 35S -- PRJNA244662 14907827 0.939 2016/3/8 GSM1369671 co-sail_1 leaves Col-0 co-SAIL -- PRJNA244662 13767089 0.9372 2016/3/8 GSM1369669 Col-0_1 leaves Col-0 wild type -- PRJNA244662 12175998 0.9456 2016/3/8 GSM1371357 infected NIK 10 days rep 1 leaves Col-0 NIK -- PRJNA244971 9219925 0.8483 2014/4/21 GSM1371361 infected T474D 10 days rep 1 leaves Col-0 T474D -- PRJNA244971 7155037 0.8835 2014/4/21 GSM1371369 infected T474D 20 days rep 1 leaves Col-0 T474D -- PRJNA244971 8979336 0.7759 2014/4/21 GSM1371363 mock Col0 20 days rep 1 leaves Col-0 wild type Mock PRJNA244971 6809675 0.779 2014/4/21 GSM1371353 infected Col0 10 days rep 1 leaves Col-0 wild type inHected CaLCuV 10dpi PRJNA244971 8486860 0.7901 2014/4/21 GSM1371365 infected Col0 20 days rep 1 leaves Col-0 wild type inHected CaLCuV 20dpi PRJNA244971 8175197 0.7843 2014/4/21 SRX528590 RNA-seq of Arabidopsis, 6h after coronatine treatment, biological rep1 whole plant Col-0 -- COR PRJNA245231 22192188 0.92 2015/1/27 SRX528553 RNA-seq of Arabidopsis, 0.25h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 23314863 0.884 2015/1/27 SRX528557 RNA-seq of Arabidopsis, 0.5h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 21213323 0.8825 2015/1/27 SRX528565 RNA-seq of Arabidopsis, 1.5h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 19940475 0.877 2015/1/27 SRX528600 RNA-seq of Arabidopsis, 10h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 26181255 0.9084 2015/1/27 SRX528604 RNA-seq of Arabidopsis, 12h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 22174594 0.9091 2015/1/27 SRX528608 RNA-seq of Arabidopsis, 14h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 26768292 0.9045 2015/1/27 SRX528612 RNA-seq of Arabidopsis, 16h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 24529732 0.9084 2015/1/27 SRX528616 RNA-seq of Arabidopsis, 18h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 21157139 0.9161 2015/1/27 SRX528561 RNA-seq of Arabidopsis, 1h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 22171427 0.905 2015/1/27 SRX528573 RNA-seq of Arabidopsis, 2.5h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 25625906 0.8655 2015/1/27 SRX528620 RNA-seq of Arabidopsis, 20h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 24843046 0.9193 2015/1/27 SRX528624 RNA-seq of Arabidopsis, 22h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 24085652 0.9136 2015/1/27 SRX528628 RNA-seq of Arabidopsis, 24h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 23199021 0.9156 2015/1/27 SRX528569 RNA-seq of Arabidopsis, 2h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 23052202 0.8772 2015/1/27 SRX528577 RNA-seq of Arabidopsis, 3h after mock treatment, biological rep2 whole plant Col-0 -- Mock PRJNA245231 27306597 0.901 2015/1/27 SRX528581 RNA-seq of Arabidopsis, 4h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 26707203 0.8996 2015/1/27 SRX528585 RNA-seq of Arabidopsis, 5h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 23312803 0.9123 2015/1/27 SRX528592 RNA-seq of Arabidopsis, 7h after mock treatment, biological rep1 whole plant Col-0 -- Mock PRJNA245231 18722623 0.9006 2015/1/27 SRX528596 RNA-seq of Arabidopsis, 8h after mock treatment, biological rep2 whole plant Col-0 -- Mock PRJNA245231 22958245 0.9097 2015/1/27 SRX528551 RNA-seq of Arabidopsis, untreated control, biological rep2 whole plant Col-0 -- control PRJNA245231 24842435 0.9142 2015/1/27 SRX528555 RNA-seq of Arabidopsis, 0.25h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 0.25h PRJNA245231 23772132 0.8776 2015/1/27 SRX528559 RNA-seq of Arabidopsis, 0.5h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 0.5h PRJNA245231 23950553 0.9182 2015/1/27 SRX528567 RNA-seq of Arabidopsis, 1.5h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 1.5h PRJNA245231 19941004 0.8802 2015/1/27 SRX528602 RNA-seq of Arabidopsis, 10h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 10h PRJNA245231 21706584 0.9067 2015/1/27 SRX528606 RNA-seq of Arabidopsis, 12h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 12h PRJNA245231 21431772 0.846 2015/1/27 SRX528610 RNA-seq of Arabidopsis, 14h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 14h PRJNA245231 26014710 0.9185 2015/1/27 SRX528614 RNA-seq of Arabidopsis, 16h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 16h PRJNA245231 23673336 0.9145 2015/1/27 SRX528618 RNA-seq of Arabidopsis, 18h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 18h PRJNA245231 25192100 0.9239 2015/1/27 SRX528563 RNA-seq of Arabidopsis, 1h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 1h PRJNA245231 24558387 0.924 2015/1/27 SRX528575 RNA-seq of Arabidopsis, 2.5h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 2.5h PRJNA245231 24396903 0.8677 2015/1/27 SRX528622 RNA-seq of Arabidopsis, 20h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 20h PRJNA245231 25153371 0.9077 2015/1/27 SRX528626 RNA-seq of Arabidopsis, 22h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 22h PRJNA245231 23451888 0.9142 2015/1/27 SRX528630 RNA-seq of Arabidopsis, 24h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 24h PRJNA245231 21794646 0.9191 2015/1/27 SRX528571 RNA-seq of Arabidopsis, 2h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 2h PRJNA245231 22975262 0.867 2015/1/27 SRX528579 RNA-seq of Arabidopsis, 3h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 3h PRJNA245231 24280731 0.9081 2015/1/27 SRX528583 RNA-seq of Arabidopsis, 4h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 4h PRJNA245231 25544178 0.9175 2015/1/27 SRX528587 RNA-seq of Arabidopsis, 5h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 5h PRJNA245231 26234951 0.9183 2015/1/27 SRX528594 RNA-seq of Arabidopsis, 7h after coronatine treatment, biological rep1 whole plant Col-0 -- coronatine 7h PRJNA245231 19347382 0.9035 2015/1/27 SRX528598 RNA-seq of Arabidopsis, 8h after coronatine treatment, biological rep2 whole plant Col-0 -- coronatine 8h PRJNA245231 24485369 0.9033 2015/1/27 GSM1377364 dcl 234 nrpd1 PolyA+ RNAseq rep1 flower bud Col-0 dcl 234 nrpd1 -- PRJNA245920 8537942 0.8734 2014/11/12 SRX540096 SR45-GFP_R1 seedlings Col-0 SR45-GFP -- PRJNA246656 61544860 0.8203 2015/11/2 SRX540098 sr45-1_R1 seedlings Col-0 sr45-1 -- PRJNA246656 49752161 0.7998 2015/11/2 GSM1390693 WT rep1 seedlings Col-0 cR-grown WT -- PRJNA248132 24919619 0.7452 2014/7/2 GSM1390696 hid1 rep1 seedlings Col-0 hid1(hidden treasure 1) -- PRJNA248132 21480371 0.7626 2014/7/2 GSM1398479 iSPCH 6h rep1 seedlings Col-0 ESTpro Incubated in 10 uM beta-estradiol Hor 6h PRJNA248481 29175174 0.8822 2014/9/5 GSM1398481 iSPCH 8h rep1 seedlings Col-0 ESTpro Incubated in 10 uM beta-estradiol Hor 8h PRJNA248481 21194280 0.8747 2014/9/5 GSM1398477 iSPCH 0h rep1 seedlings Col-0 ESTpro Not treated PRJNA248481 26028230 0.8696 2014/9/5 GSM1398473 WT 6h rep1 seedlings Col-0 wild type Incubated in 10 uM beta-estradiol Hor 6h PRJNA248481 23405674 0.8783 2014/9/5 GSM1398475 WT 8h rep1 seedlings Col-0 wild type Incubated in 10 uM beta-estradiol Hor 8h PRJNA248481 20681996 0.8852 2014/9/5 GSM1413823 cry1 cry2-BL rep1 seedlings Col-0 cry1 cry2 double mutant -- PRJNA252931 24680000 0.8958 2016/6/15 GSM1413825 tir1 afb123-D rep1 seedlings Col-0 tir1 afb1 afb2 afb3 quadruple mutant -- PRJNA252931 24087478 0.8857 2016/6/15 GSM1413821 WT-BL rep1 seedlings Col-0 wild type Mock PRJNA252931 24982296 0.8882 2016/6/15 GSM1413819 WT-D rep1 seedlings Col-0 wild type dark PRJNA252931 21050000 0.8891 2016/6/15 SRX639778 Transcriptome of bhlh91 anther stage 4-7- replicate 1 anther Col-0 bhlh91 -- PRJNA254091 11890863 0.9683 2015/1/1 SRX687831 Transcriptome of WT anther stage 4-7- replicate 1 anther Col-0 wild type -- PRJNA254091 10774840 0.9596 2015/6/30 GSM1429684 clavata2-gabi replicate 1 root tip Col-0 clavata2-gabi -- PRJNA254520 34716067 0.832 2014/10/3 GSM1429688 cle40-2 replicate 1 root tip Col-0 cle40-2 -- PRJNA254520 41607709 0.8042 2014/10/3 GSM1429682 coryne-3 replicate 1 root tip Col-0 coryne-3 -- PRJNA254520 29183204 0.7926 2014/10/3 GSM1429679 Col-0 replicate1 root tip Col-0 wild type -- PRJNA254520 28783932 0.7906 2014/10/3 GSM1441335 stk1 inflorescences and siliques Col-0 stk-/- -- PRJNA255799 38599741 0.8257 2014/12/17 GSM1978176 p4ox_16h_lbl replicate 1 seedlings Col-0 35Spro low blue PRJNA255977 23768477 0.8871 2015/12/31 GSM1978180 p5ox_16h_lbl replicate 1 seedlings Col-0 35Spro low blue PRJNA255977 29289337 0.9203 2015/12/31 GSM1978178 p4ox_16h_wl replicate 1 seedlings Col-0 35Spro white light PRJNA255977 45475740 0.9168 2015/12/31 GSM1978182 p5ox_16h_wl replicate 1 seedlings Col-0 35Spro white light PRJNA255977 24700438 0.9198 2015/12/31 GSM1443117 p4p5_1h_lbl replicate 1 seedlings Col-0 pif4-101pif5-1 low blue PRJNA255977 25638398 0.7411 2015/12/31 GSM1443133 p4p5_24h_lbl replicate 1 seedlings Col-0 pif4-101pif5-1 low blue PRJNA255977 24578180 0.8171 2015/12/31 GSM1443125 p4p5_6h_lbl replicate 1 seedlings Col-0 pif4-101pif5-1 low blue PRJNA255977 21924440 0.8329 2015/12/31 GSM1443119 p4p5_1h_wl replicate 1 seedlings Col-0 pif4-101pif5-1 white light PRJNA255977 41518444 0.7625 2015/12/31 GSM1443135 p4p5_24h_wl replicate 1 seedlings Col-0 pif4-101pif5-1 white light PRJNA255977 24387367 0.8201 2015/12/31 GSM1443127 p4p5_6h_wl replicate 1 seedlings Col-0 pif4-101pif5-1 white light PRJNA255977 25596023 0.7905 2015/12/31 GSM1978186 col_16h_wl replicate 1 seedlings Col-0 wild type Mock PRJNA255977 18391594 0.9226 2015/12/31 GSM1443115 col_1h_wl replicate 1 seedlings Col-0 wild type Mock PRJNA255977 35960759 0.7613 2015/12/31 GSM1443131 col_24h_wl replicate 1 seedlings Col-0 wild type Mock PRJNA255977 26863105 0.8074 2015/12/31 GSM1443123 col_6h_wl replicate 1 seedlings Col-0 wild type Mock PRJNA255977 32387188 0.8209 2015/12/31 GSM1978184 col_16h_lbl replicate 1 seedlings Col-0 wild type low blue-light 16h PRJNA255977 26740122 0.9145 2015/12/31 GSM1443113 col_1h_lbl replicate 1 seedlings Col-0 wild type low blue-light 1h PRJNA255977 47753357 0.761 2015/12/31 GSM1443129 col_24h_lbl replicate 1 seedlings Col-0 wild type low blue-light 24h PRJNA255977 26519218 0.8152 2015/12/31 GSM1443121 col_6h_lbl replicate 1 seedlings Col-0 wild type low blue-light 6h PRJNA255977 28311479 0.8339 2015/12/31 GSM1444366 pif7_sCot3h replicate-1 cotyledon Col-0 pif7-1 -- PRJNA256037 32459108 0.8403 2017/7/16 GSM1444370 pif7_wCot3h replicate-1 cotyledon Col-0 pif7-1 -- PRJNA256037 36970913 0.8127 2017/7/16 GSM1444374 sav3_sCot3h replicate-1 cotyledon Col-0 sav3-2 -- PRJNA256037 30396640 0.8111 2017/7/16 GSM1444380 sav3_wCot3h replicate-1 cotyledon Col-0 sav3-2 -- PRJNA256037 30318169 0.7958 2017/7/16 GSM1444328 wCot0h replicate-1 cotyledon Col-0 wild type Mock PRJNA256037 24478899 0.8616 2017/7/16 GSM1444334 wCot30m replicate-1 cotyledon Col-0 wild type high R:HR_0.5h PRJNA256037 33897584 0.8611 2017/7/16 GSM1444330 wCot1h replicate-1 cotyledon Col-0 wild type high R:HR_1h PRJNA256037 22168810 0.8705 2017/7/16 GSM1444332 wCot2h replicate-1 cotyledon Col-0 wild type high R:HR_2h PRJNA256037 29528653 0.8645 2017/7/16 GSM1444336 wCot3h replicate-1 cotyledon Col-0 wild type high R:HR_3h PRJNA256037 24122242 0.8654 2017/7/16 GSM1444338 wCot4h replicate-1 cotyledon Col-0 wild type high R:HR_4h PRJNA256037 28916609 0.8524 2017/7/16 GSM1444340 wCot7h replicate-1 cotyledon Col-0 wild type high R:HR_7h PRJNA256037 25037465 0.8643 2017/7/16 GSM1444358 sCot30m replicate-1 cotyledon Col-0 wild type low R:HR_0.5h PRJNA256037 26877631 0.8579 2017/7/16 GSM1444354 sCot1h replicate-1 cotyledon Col-0 wild type low R:HR_1h PRJNA256037 25348163 0.8645 2017/7/16 GSM1444356 sCot2h replicate-1 cotyledon Col-0 wild type low R:HR_2h PRJNA256037 27210263 0.8512 2017/7/16 GSM1444360 sCot3h replicate-1 cotyledon Col-0 wild type low R:HR_3h PRJNA256037 26203029 0.8599 2017/7/16 GSM1444362 sCot4h replicate-1 cotyledon Col-0 wild type low R:HR_4h PRJNA256037 29320116 0.834 2017/7/16 GSM1444364 sCot7h replicate-1 cotyledon Col-0 wild type low R:HR_7h PRJNA256037 30202696 0.8521 2017/7/16 GSM1444368 pif7_sHyp3h replicate-1 hypocotyl Col-0 pif7-1 -- PRJNA256037 26192203 0.8032 2017/7/16 GSM1444372 pif7_wHyp3h replicate-1 hypocotyl Col-0 pif7-1 -- PRJNA256037 20552804 0.7981 2017/7/16 GSM1444377 sav3_sHyp3h replicate-1 hypocotyl Col-0 sav3-2 -- PRJNA256037 19596402 0.8267 2017/7/16 GSM1444383 sav3_wHyp3h replicate-1 hypocotyl Col-0 sav3-2 -- PRJNA256037 23296169 0.8417 2017/7/16 GSM1444314 wHyp0h replicate-1 hypocotyl Col-0 wild type Mock PRJNA256037 22255406 0.8912 2017/7/16 GSM1444320 wHyp30m replicate-1 hypocotyl Col-0 wild type high R:HR_0.5h PRJNA256037 22916902 0.887 2017/7/16 GSM1444316 wHyp1h replicate-1 hypocotyl Col-0 wild type high R:HR_1h PRJNA256037 20665418 0.8913 2017/7/16 GSM1444318 wHyp2h replicate-1 hypocotyl Col-0 wild type high R:HR_2h PRJNA256037 23080864 0.8939 2017/7/16 GSM1444322 wHyp3h replicate-1 hypocotyl Col-0 wild type high R:HR_3h PRJNA256037 27178194 0.8994 2017/7/16 GSM1444324 wHyp4h replicate-1 hypocotyl Col-0 wild type high R:HR_4h PRJNA256037 25062127 0.8821 2017/7/16 GSM1444326 wHyp7h replicate-1 hypocotyl Col-0 wild type high R:HR_7h PRJNA256037 26171115 0.8951 2017/7/16 GSM1444346 sHyp30m replicate-1 hypocotyl Col-0 wild type low R:HR_0.5h PRJNA256037 20288910 0.8549 2017/7/16 GSM1444342 sHyp1h replicate-1 hypocotyl Col-0 wild type low R:HR_1h PRJNA256037 24954174 0.8882 2017/7/16 GSM1444344 sHyp2h replicate-1 hypocotyl Col-0 wild type low R:HR_2h PRJNA256037 23663748 0.8131 2017/7/16 GSM1444348 sHyp3h replicate-1 hypocotyl Col-0 wild type low R:HR_3h PRJNA256037 22869893 0.8757 2017/7/16 GSM1444350 sHyp4h replicate-1 hypocotyl Col-0 wild type low R:HR_4h PRJNA256037 26629830 0.8819 2017/7/16 GSM1444352 sHyp7h replicate-1 hypocotyl Col-0 wild type low R:HR_7h PRJNA256037 23957206 0.8567 2017/7/16 SRX661206 Control sample #1 root Col-0 es Mock PRJNA256121 23067621 0.7922 2014/8/6 SRX661209 iron-deficiency sample #1 root Col-0 fe He starvation PRJNA256121 22424314 0.8264 2014/8/4 GSM1446188 CNT1 rep1 seedlings Col-0 35S -- PRJNA256168 31104400 0.8801 2016/7/25 GSM1446190 CNT1-G283E rep1 seedlings Col-0 35S -- PRJNA256168 29520986 0.8892 2016/7/25 GSM1477533 lsm4 rep 1,1 whole plant Col-0 lsm4 mutant -- PRJNA258161 19060681 0.8616 2014/11/4 GSM1477535 lsm4 rep 2,1 whole plant Col-0 lsm4 mutant -- PRJNA258161 16529056 0.9042 2014/11/4 GSM1477537 lsm4 rep 3,1 whole plant Col-0 lsm4 mutant -- PRJNA258161 17966543 0.9105 2014/11/4 GSM1477529 WT Col rep 2, 1 whole plant Col-0 wild type -- PRJNA258161 26950636 0.889 2014/11/4 GSM1477531 WT Col rep 3,1 whole plant Col-0 wild type -- PRJNA258161 13605597 0.9008 2014/11/4 GSM1489633 Col_D-2 seedlings Col-0 wild type Mock PRJNA259643 34684577 0.8302 2015/3/19 GSM1489635 Col_DL6h-1 seedlings Col-0 wild type switch dark to light 6h PRJNA259643 24843825 0.8754 2015/3/19 GSM1491393 Contr-1 shoot Col-0 -- Mock PRJNA259680 28328558 0.8729 2016/12/6 GSM1491396 HL20-1 shoot Col-0 -- light stress 20s PRJNA259680 26556144 0.872 2016/12/6 GSM1491399 HL60-1 shoot Col-0 -- light stress 60s PRJNA259680 19940490 0.8697 2016/12/6 GSM1496101 Col20GC1 seed Col-0 -- Mock PRJNA260171 47936727 0.8723 2014/9/8 GSM1496098 Col15GC1 seed Col-0 -- cold 15 cotyledon PRJNA260171 44251329 0.8747 2014/9/8 GSM1501693 mol1_replicat 1 stem Col-0 mol1-1 mutant -- PRJNA260678 47386087 0.9168 2016/3/25 GSM1501691 WT_replicat 1 stem Col-0 wild type -- PRJNA260678 39103158 0.9169 2016/3/25 GSM1504314 Arabidopsis leaf infected by 96-11-17M 0h rep 1 leaf Col-0 -- Vibrio vulnificus 0h PRJNA261035 15647908 0.9401 2019/10/7 GSM1504316 Arabidopsis leaf infected by 96-11-17M 12h rep 1 leaf Col-0 -- Vibrio vulnificus 12h PRJNA261035 17608942 0.9389 2019/10/7 GSM1504318 Arabidopsis leaf infected by 96-11-17M 24h rep 1 leaf Col-0 -- Vibrio vulnificus 24h PRJNA261035 15100180 0.9416 2019/10/7 GSM1504320 Arabidopsis leaf infected by 96-11-17M 48h rep 1 leaf Col-0 -- Vibrio vulnificus 48h PRJNA261035 16845066 0.9407 2019/10/7 GSM1504322 Arabidopsis leaf infected by 96-11-17M 72h rep 1 leaf Col-0 -- Vibrio vulnificus 72h PRJNA261035 12447740 0.942 2019/10/7 GSM1507915 Col-0 O3 rep1 rosette leaf Col-0 Col-0 350 ppb ozone exposure Hor 2hr PRJNA261430 27906929 0.8963 2014/9/22 GSM1507912 Col-0 ctrl rep1 rosette leaf Col-0 Col-0 control PRJNA261430 21497045 0.8905 2014/9/21 GSM1507951 WT inflorescences replicate 2 inflorescence Col-0 Wild Type -- PRJNA261433 24462060 0.7616 2016/3/28 GSM1507962 clf28 inflorescences replicate 1 inflorescence Col-0 clf-28 mutant -- PRJNA261433 17583028 0.8216 2016/3/28 GSM1507956 clf28 roots replicate 1 root Col-0 clf-28 mutant -- PRJNA261433 20978975 0.8038 2016/3/28 GSM1507959 clf28 shoots replicate 1 shoot Col-0 clf-28 mutant -- PRJNA261433 20933518 0.7885 2016/3/28 GSM1507947 WT shoots replicate 1 shoot Col-0 wild type -- PRJNA261433 18359355 0.7289 2016/3/28 GSM1507965 clf28 siliques replicate 1 siliques Col-0 clf-28 mutant -- PRJNA261433 18037908 0.7916 2016/3/28 GSM1507954 WT siliques replicate 2 siliques Col-0 wild type -- PRJNA261433 23648350 0.7306 2016/3/28 GSM1518600 WT Col rep 1 whole plant Col-0 Wild type -- PRJNA262970 15691648 0.8948 2015/4/3 GSM1518606 prmt4a;4b mutant rep 1 whole plant Col-0 prmt4a;4b double mutant -- PRJNA262970 15369860 0.8614 2015/4/3 GSM1518603 prmt5 mutant rep 1 whole plant Col-0 prmt5 mutant -- PRJNA262970 17220557 0.8813 2015/4/3 GSM1527628 mRNA-seq_Col_Rep1 seedling shoot Col-0 -- -- PRJNA264397 25353362 0.9362 2018/4/24 GSM1530033 mRNA-seq_Col_clf_Rep1 seedling shoot Col-0 clf -- PRJNA264544 15644463 0.9391 2016/11/1 GSM1546548 atr_MMC_R1 apical shoot meristem Col-0 -- -- PRJNA267558 15559038 0.8472 2014/11/19 GSM1546544 atr_mock_R1 apical shoot meristem Col-0 -- -- PRJNA267558 15888325 0.8365 2014/11/19 GSM1546546 atr_zeb_R1 apical shoot meristem Col-0 -- -- PRJNA267558 11438138 0.8398 2014/11/19 GSM1546542 WT_MMC_R1 apical shoot meristem Col-0 -- MMC PRJNA267558 17829167 0.8449 2014/11/19 GSM1546550 WT_mock_5d_R1 apical shoot meristem Col-0 -- Mock PRJNA267558 13517349 0.8333 2014/11/19 GSM1546538 WT_mock_R1 apical shoot meristem Col-0 -- Mock PRJNA267558 20402054 0.848 2014/11/19 GSM1546540 WT_zeb_R1 apical shoot meristem Col-0 -- zebularine PRJNA267558 15148825 0.8524 2014/11/19 GSM1546552 WT_zeb_5d_R1 apical shoot meristem Col-0 -- zebularine 5day PRJNA267558 11938166 0.8354 2014/11/19 GSM1548128 WT Col control rep 1 whole plant Col-0 Wild type Mock PRJNA267681 11002187 0.8743 2015/8/3 GSM1548134 WT Col 1h rep 1 whole plant Col-0 Wild type cold10 1h PRJNA267681 12717709 0.8939 2015/8/3 GSM1548140 WT Col 24h rep 1 whole plant Col-0 Wild type cold10 24h PRJNA267681 10588213 0.8838 2015/8/3 GSM1548137 gemin2 mutant 1h rep 1 whole plant Col-0 gemin2 mutant -- PRJNA267681 28227307 0.8989 2015/8/3 GSM1548143 gemin2 mutant 24h rep 1 whole plant Col-0 gemin2 mutant -- PRJNA267681 11025989 0.891 2015/8/3 GSM1548131 gemin2 mutant control rep 1 whole plant Col-0 gemin2 mutant -- PRJNA267681 15099941 0.8817 2015/8/3 GSM1548122 WT Col rep 1 whole plant Col-0 Wild type -- PRJNA267682 14103699 0.9076 2015/8/3 GSM1548125 gemin2 mutant rep 1 whole plant Col-0 gemin2 mutant -- PRJNA267682 15493618 0.9026 2015/8/3 GSM1550354 thInflo rep1 inflorescence Col-0 wild type -- PRJNA267853 6766551 0.9313 2015/10/13 GSM1570246 RNA-seq_COR_1 rosette leaf Col-0 -- Coronatine PRJNA270886 12500376 0.8973 2015/5/28 GSM1570244 RNA-seq_control_1 rosette leaf Col-0 -- Mock PRJNA270886 13587207 0.8969 2015/5/28 GSM1572738 ACS rep1 shoot Col-0 -- Mock PRJNA271131 7251500 0.7295 2015/5/1 GSM1572750 ECS rep1 shoot Col-0 -- high CO2 PRJNA271131 7328717 0.7579 2015/5/1 GSM1572746 ALS rep1 shoot Col-0 -- low MgCl2 PRJNA271131 7053963 0.83 2015/5/1 GSM1572758 ELS rep1 shoot Col-0 -- low MgCl2 + high CO2 PRJNA271131 8579532 0.7227 2015/5/1 GSM1573847 Low CO2 Rep 2 leaves Col-0 Wild type Low CO2 PRJNA271284 10984590 0.7149 2017/1/3 GSM1576088 35S_0h_rep1 root Col-0 -- -- PRJNA271499 37660883 0.8672 2015/1/6 GSM1576090 35S_3h_rep1 root Col-0 -- -- PRJNA271499 26840431 0.8357 2015/1/6 GSM1576092 35S_8h_rep1 root Col-0 -- -- PRJNA271499 33124168 0.8619 2015/1/6 GSM1576094 pBRN2_0h_rep1 root Col-0 -- -- PRJNA271499 42149650 0.7717 2015/1/6 GSM1576096 pBRN2_3h_rep1 root Col-0 -- -- PRJNA271499 39622923 0.7616 2015/1/6 GSM1576098 pBRN2_8h_rep1 root Col-0 -- -- PRJNA271499 38568447 0.7793 2015/1/6 GSM1576100 pGL2_0h_rep1 root Col-0 -- -- PRJNA271499 37640099 0.8154 2015/1/6 GSM1576102 pGL2_3h_rep1 root Col-0 -- -- PRJNA271499 34384550 0.8157 2015/1/6 GSM1576104 pGL2_8h_rep1 root Col-0 -- -- PRJNA271499 31165104 0.8656 2015/1/6 GSM1576106 pSCR_0h_rep1 root Col-0 -- -- PRJNA271499 23981467 0.8684 2015/1/6 GSM1576108 pSCR_3h_rep1 root Col-0 -- -- PRJNA271499 29034397 0.8709 2015/1/6 GSM1576110 pSCR_8h_rep1 root Col-0 -- -- PRJNA271499 41651471 0.8718 2015/1/6 GSM1576112 pSHR_0h_rep1 root Col-0 -- -- PRJNA271499 35398744 0.7837 2015/1/6 GSM1576114 pSHR_3h_rep1 root Col-0 -- -- PRJNA271499 37462016 0.779 2015/1/6 GSM1576116 pSHR_8h_rep1 root Col-0 -- -- PRJNA271499 36054197 0.7854 2015/1/6 GSM1585896 ros1-3_ABA_rep1 whole plant Col-0 ros1-3 ABA PRJNA272719 7988876 0.9036 2016/1/15 GSM1585893 ros1-3_mock_rep1 whole plant Col-0 ros1-3 mock PRJNA272719 8134575 0.8967 2016/1/15 GSM1585902 ros1-4_ABA_rep1 whole plant Col-0 ros1-4 ABA PRJNA272719 13166085 0.9449 2016/1/15 GSM1585899 ros1-4_mock_rep1 whole plant Col-0 ros1-4 mock PRJNA272719 8760931 0.937 2016/1/15 GSM1585890 WT_ABA_rep1 whole plant Col-0 wild type ABA PRJNA272719 16555739 0.9275 2016/1/15 GSM1585887 WT_mock_rep1 whole plant Col-0 wild type mock PRJNA272719 7379945 0.8968 2016/1/15 SRX849455 KA1L4 aerial seedling Col-0 mtkas-2 mutant -- PRJNA272859 11963554 0.9472 2015/2/25 SRX849462 KC1L13 aerial seedling Col-0 mtkas-2 mutant -- PRJNA272859 10964315 0.9433 2015/2/25 SRX849459 WC1L10 aerial seedling Col-0 wild type CO2 PRJNA272859 8940215 0.9446 2015/2/25 SRX849205 WA1L1 aerial seedling Col-0 wild type Mock PRJNA272859 10224158 0.9465 2015/2/25 GSM1591713 Cao-1 rosette leaf Col-0 cao mutant -- PRJNA273631 28675398 0.8757 2017/1/3 GSM1603465 NSRab mutant rep1 seedlings Col-0 NSRa/NSRb -- PRJNA274783 33462328 0.9299 2016/1/4 GSM1603462 WT rep1 seedlings Col-0 wild type -- PRJNA274783 29411066 0.9338 2016/1/4 GSM1603946 coi1-16 ein2 sid2 ctrl rep1 rosette leaf Col-0 coi1-16 ein2 sid2 Mock PRJNA274887 26108053 0.8889 2015/2/12 GSM1603958 tga2 tga5 tga6 ctrl rep1 rosette leaf Col-0 tga2 tga5 tga6 Mock PRJNA274887 22331167 0.9242 2015/2/12 GSM1603961 tga2 tga5 tga6 ozone rep1 rosette leaf Col-0 tga2 tga5 tga6 ozone PRJNA274887 22320808 0.9075 2015/2/12 GSM1603933 WT_ABA_1 seedlings Col-0 -- ABA PRJNA274888 23670828 0.9169 2016/8/11 GSM1603935 WT_DPA_1 seedlings Col-0 -- DPA PRJNA274888 28004916 0.923 2016/8/11 GSM1603932 WT_mock_1 seedlings Col-0 -- Mock PRJNA274888 27048428 0.9249 2016/8/11 GSM1603934 WT_PA_1 seedlings Col-0 -- PA PRJNA274888 32383837 0.9161 2016/8/11 GSM1617429 Arabidopsis_RNA_rep1 inflorescence Col-0 -- -- PRJNA276134 6686816 0.8466 2015/11/2 GSM1618754 WT Bc 14h rep 1 leaves Col-0 wild type Botrytis cinerea 14hpi PRJNA276444 29844673 0.8373 2015/6/15 GSM1618751 WT mock rep 1 leaves Col-0 wild type Mock PRJNA276444 30108991 0.8639 2015/6/15 GSM1618760 wrky33 Bc 14h rep 1 leaves Col-0 wrky33 mutant Botrytis cinerea 14hpi PRJNA276444 29049466 0.7382 2015/6/15 GSM1618757 wrky33 mock rep 1 leaves Col-0 wrky33 mutant Mock PRJNA276444 32983807 0.8872 2015/6/15 GSM1627453 athb1-1 Rep1 seedlings Col-0 athb1-1 -- PRJNA277695 5652897 0.9419 2015/4/1 GSM1631204 44ab1 seedlings Col-0 rbm25-1 ABA PRJNA277840 21879445 0.9587 2015/10/28 GSM1631201 44ck1 seedlings Col-0 rbm25-1 Mock PRJNA277840 18980687 0.9505 2015/10/28 GSM1631198 WTab1 seedlings Col-0 wild type ABA PRJNA277840 23072134 0.9641 2015/10/28 GSM1631195 WTck1 seedlings Col-0 wild type Mock PRJNA277840 20551329 0.9566 2015/10/28 SRX974287 L72_col_1 rosette leaf Col-0 CS60000 8h light/16h dark Hor 72h PRJNA279504 48072417 0.8674 2016/3/26 SRX974046 D24_col_1 rosette leaf Col-0 CS60000 prolonged darkness Hor 24h PRJNA279504 60056580 0.8757 2016/3/26 SRX974270 D48_col_1 rosette leaf Col-0 CS60000 prolonged darkness Hor 48h PRJNA279504 30099100 0.8469 2016/3/26 SRX973945 D6_col_1 rosette leaf Col-0 CS60000 prolonged darkness Hor 6h PRJNA279504 38428216 0.8745 2016/3/26 SRX974283 D72_col_1 rosette leaf Col-0 CS60000 prolonged darkness Hor 72h PRJNA279504 30852988 0.879 2016/3/26 SRX974289 L72_hml_1 rosette leaf Col-0 hml1-2; SALK_145226C 8h light/16h dark Hor 72h PRJNA279504 37616244 0.8866 2016/3/26 SRX974048 D24_hml_1 rosette leaf Col-0 hml1-2; SALK_145226C prolonged darkness Hor 24h PRJNA279504 37391820 0.8782 2016/3/26 SRX974282 D48_hml_1 rosette leaf Col-0 hml1-2; SALK_145226C prolonged darkness Hor 48h PRJNA279504 41511885 0.8865 2016/3/26 SRX973947 D6_hml_1 rosette leaf Col-0 hml1-2; SALK_145226C prolonged darkness Hor 6h PRJNA279504 39260511 0.8747 2016/3/26 SRX974285 D72_hml_1 rosette leaf Col-0 hml1-2; SALK_145226C prolonged darkness Hor 72h PRJNA279504 48635404 0.8996 2016/3/26 SRX974288 L72_ivd_1 rosette leaf Col-0 ivd1-2; CS860823 8h light/16h dark Hor 72h PRJNA279504 41022614 0.8795 2016/3/26 SRX970025 0h_ivd_1 rosette leaf Col-0 ivd1-2; CS860823 Mock PRJNA279504 43651959 0.8721 2016/3/26 SRX974047 D24_ivd_1 rosette leaf Col-0 ivd1-2; CS860823 prolonged darkness Hor 24h PRJNA279504 42611364 0.8623 2016/3/26 SRX974271 D48_ivd_1 rosette leaf Col-0 ivd1-2; CS860823 prolonged darkness Hor 48h PRJNA279504 25124458 0.8896 2016/3/26 SRX973946 D6_ivd_1 rosette leaf Col-0 ivd1-2; CS860823 prolonged darkness Hor 6h PRJNA279504 36067103 0.8769 2016/3/26 GSM1655653 RNA-seq_29d-1 leaf mesophyll Col-0 -- -- PRJNA280870 15165800 0.8204 2015/6/16 GSM1655657 RNA-seq_35d-2 leaf mesophyll Col-0 -- -- PRJNA280870 18587566 0.8177 2015/6/16 GSM1655659 RNA-seq_42d-1 leaf mesophyll Col-0 -- -- PRJNA280870 15463953 0.8153 2015/6/16 GSM1655663 RNA-seq_57d-2 leaf mesophyll Col-0 -- -- PRJNA280870 18587566 0.8177 2015/6/16 GSM1656445 col_RNA_1 12day seedlings Col-0 wild type -- PRJNA281004 18714459 0.8774 2019/5/2 GSM1659613 0h_wt_1 rosette leaf Col-0 CS60000 dark 0day PRJNA281364 35364003 0.8668 2015/4/20 GSM1659619 D1_wt_1 rosette leaf Col-0 CS60000 dark 1day PRJNA281364 60056580 0.8757 2015/4/20 GSM1659625 D2_wt_1 rosette leaf Col-0 CS60000 dark 2day PRJNA281364 30099100 0.8469 2015/4/20 GSM1659631 D3_wt_1 rosette leaf Col-0 CS60000 dark 3day PRJNA281364 30852988 0.879 2015/4/20 GSM1659637 D6h_wt_1 rosette leaf Col-0 CS60000 dark 6h PRJNA281364 38428216 0.8745 2015/4/20 GSM1659643 L3_wt_1 rosette leaf Col-0 CS60000 kept in 8h light/16h dark Hor 72h PRJNA281364 48072417 0.8674 2015/4/20 GSM1659615 D1_hml_1 rosette leaf Col-0 hml1-2 dark 1day PRJNA281364 37391820 0.8782 2015/4/20 GSM1659621 D2_hml_1 rosette leaf Col-0 hml1-2 dark 2day PRJNA281364 41511885 0.8865 2015/4/20 GSM1659627 D3_hml_1 rosette leaf Col-0 hml1-2 dark 3day PRJNA281364 48635404 0.8996 2015/4/20 GSM1659633 D6h_hml_1 rosette leaf Col-0 hml1-2 dark 6h PRJNA281364 39260511 0.8747 2015/4/20 GSM1659639 L3_hml_1 rosette leaf Col-0 hml1-2 kept in 8h light/16h dark Hor 72h PRJNA281364 37616244 0.8866 2015/4/20 GSM1659611 0h_ivd_1 rosette leaf Col-0 ivd1-2 dark 0day PRJNA281364 43651959 0.8721 2015/4/20 GSM1659617 D1_ivd_1 rosette leaf Col-0 ivd1-2 dark 1day PRJNA281364 42611364 0.8623 2015/4/20 GSM1659623 D2_ivd_1 rosette leaf Col-0 ivd1-2 dark 2day PRJNA281364 25124458 0.8896 2015/4/20 GSM1659635 D6h_ivd_1 rosette leaf Col-0 ivd1-2 dark 6h PRJNA281364 36067103 0.8769 2015/4/20 GSM1659641 L3_ivd_1 rosette leaf Col-0 ivd1-2 kept in 8h light/16h dark Hor 72h PRJNA281364 41022614 0.8795 2015/4/20 GSM1662397 Wild-type_r1 embryo Col-0 Col-0 -- PRJNA281702 48640170 0.7727 2016/3/28 GSM1662399 clf-28_r1 embryo Col-0 clf-28 -- PRJNA281702 39096872 0.8367 2016/3/28 GSM1675602 dark control rep 1 whole plant Col-0 -- Mock PRJNA283114 12011875 0.9128 2016/8/9 GSM1675605 light pulse rep 1 whole plant Col-0 -- light pulse PRJNA283114 11494706 0.8928 2016/8/9 GSM1679009 GR:KAN1 DEX Shade 1 seedlings Col-0 35S -- PRJNA283396 18132081 0.9471 2015/8/11 GSM1679005 GR:KAN1 DEX WL 1 seedlings Col-0 35S -- PRJNA283396 17617030 0.9488 2015/8/11 GSM1679008 GR:KAN1 Mock Shade 1 seedlings Col-0 35S -- PRJNA283396 20891864 0.9361 2015/8/11 GSM1679004 GR:KAN1 Mock WL 1 seedlings Col-0 35S -- PRJNA283396 18230274 0.9433 2015/8/11 GSM1679003 Col-0 DEX WL 1 seedlings Col-0 wild type DEX PRJNA283396 16194151 0.9503 2015/8/11 GSM1679007 Col-0 DEX Shade 1 seedlings Col-0 wild type DEX shade PRJNA283396 18975596 0.9235 2015/8/11 GSM1679002 Col-0 Mock WL 1 seedlings Col-0 wild type Mock PRJNA283396 15546867 0.9409 2015/8/11 GSM1679006 Col-0 Mock Shade 1 seedlings Col-0 wild type Shade PRJNA283396 18620327 0.9409 2015/8/11 GSM1692579 At_H6R48_R1 rosette leaf Col-0 -- heat6hrecovery48h PRJNA284487 14346675 0.7064 2015/8/2 GSM1695576 At_rosette_R1 rosette leaf Col-0 -- -- PRJNA284922 21213873 0.7979 2015/8/2 SRX1057354 AtWtRootsBA1 root Col-0 wild type BA PRJNA286779 8534278 0.9182 2015/7/31 SRX1057345 AtWtRootsD1 root Col-0 wild type Mock PRJNA286779 9825441 0.9221 2015/7/31 SRX1057349 AtWtShootsBA1 shoot Col-0 wild type BA PRJNA286779 11254693 0.9024 2015/7/31 SRX1056702 AtWtShootsD1 shoot Col-0 wild type Mock PRJNA286779 10301467 0.9238 2015/7/31 SRX1058195 Arabidopsis thaliana (Col-0) control treatment replicate 1 root tip Col-0 -- Mock PRJNA286948 61632650 0.9344 2016/6/13 SRX1058189 Arabidopsis thaliana (Col-0) glucose treatment replicate 1 root tip Col-0 -- glucose PRJNA286948 53347816 0.9314 2016/6/13 SRX1058196 Arabidopsis thaliana (agb1-2) control treatment replicate 2 root tip Col-0 agb1-2 -- PRJNA286948 54303603 0.93 2016/6/13 SRX1058190 Arabidopsis thaliana (agb1-2) glucose treatment replicate 1 root tip Col-0 agb1-2 -- PRJNA286948 54347203 0.9276 2016/6/13 SRX1060138 Arabidopsis_whole_plant_1 whole plant Col-0 -- -- PRJNA287059 9880442 0.7883 2015/6/16 GSM1717055 minusP10Ci_Exp2_1 root Col-0 -- Colletotrichum incanum 10dpi (under low phosphate) PRJNA287627 27570708 0.9064 2016/3/17 GSM1717058 minusP24Ci_Exp2_1 root Col-0 -- Colletotrichum incanum 24dpi (under low phosphate) PRJNA287627 31218120 0.9378 2016/3/17 GSM1717016 plusP10Ct_1 root Col-0 -- Colletotrichum toHieldiae 10dpi PRJNA287627 28915226 0.8822 2016/3/17 GSM1717040 minusP10Ct_1 root Col-0 -- Colletotrichum toHieldiae 10dpi (under low phosphate) PRJNA287627 27822765 0.8669 2016/3/17 GSM1717019 plusP16Ct_1 root Col-0 -- Colletotrichum toHieldiae 16dpi PRJNA287627 29969823 0.7204 2016/3/17 GSM1717043 minusP16Ct_1 root Col-0 -- Colletotrichum toHieldiae 16dpi (under low phosphate) PRJNA287627 44942979 0.7556 2016/3/17 GSM1717046 minusP24Ct_1 root Col-0 -- Colletotrichum toHieldiae 24dpi (under low phosphate) PRJNA287627 40802776 0.8657 2016/3/17 GSM1717013 plusP06Ct_1 root Col-0 -- Colletotrichum toHieldiae 6dpi PRJNA287627 26300725 0.935 2016/3/17 GSM1717038 minusP06Ct_2 root Col-0 -- Colletotrichum toHieldiae 6dpi (under low phosphate) PRJNA287627 29475369 0.8312 2016/3/17 GSM1717028 minusP10mock_1 root Col-0 -- Mock PRJNA287627 24217016 0.8902 2016/3/17 GSM1717031 minusP16mock_1 root Col-0 -- Mock PRJNA287627 39593254 0.8819 2016/3/17 GSM1717034 minusP24mock_1 root Col-0 -- Mock PRJNA287627 26794885 0.8815 2016/3/17 GSM1717001 plusP06mock_1 root Col-0 -- Mock PRJNA287627 21940671 0.7536 2016/3/17 GSM1717004 plusP10mock_1 root Col-0 -- Mock PRJNA287627 22428599 0.878 2016/3/17 GSM1717007 plusP16mock_1 root Col-0 -- Mock PRJNA287627 21426222 0.8469 2016/3/17 GSM1717010 plusP24mock_1 root Col-0 -- Mock PRJNA287627 34042395 0.836 2016/3/17 GSM1810465 B 0h R1 seedlings Col-0 -- Mock PRJNA289063 47853358 0.8218 2016/10/24 GSM1810473 R 0h R1 seedlings Col-0 -- Mock PRJNA289063 48482770 0.8201 2016/10/24 GSM1810481 W 0h R1 seedlings Col-0 -- Mock PRJNA289063 42065394 0.7323 2016/10/24 GSM1810469 B 1h R1 seedlings Col-0 -- blue 1h PRJNA289063 76645685 0.8266 2016/10/24 GSM1810471 B 6h R1 seedlings Col-0 -- blue 6h PRJNA289063 68621967 0.8105 2016/10/24 GSM1810467 B 6hD R1 seedlings Col-0 -- dark 6h PRJNA289063 48103205 0.826 2016/10/24 GSM1810475 R 6hD R1 seedlings Col-0 -- dark 6h PRJNA289063 50072948 0.8078 2016/10/24 GSM1810484 W 6hD R1 seedlings Col-0 -- dark 6h PRJNA289063 41496431 0.724 2016/10/24 GSM1810477 R 1h R1 seedlings Col-0 -- red 1h PRJNA289063 92980894 0.7772 2016/10/24 GSM1810479 R 6h R1 seedlings Col-0 -- red 6h PRJNA289063 90652884 0.765 2016/10/24 GSM1810488 W 6h R1 seedlings Col-0 -- white 6h PRJNA289063 89997196 0.8629 2016/10/24 GSM1811230 col_en1 endodermis Col-0 wild type -- PRJNA289110 24763472 0.8096 2015/7/20 GSM1811254 myb_wr1 root Col-0 mutant (myb36-1) -- PRJNA289110 23644976 0.8651 2015/7/20 GSM1811247 col_wr1 root Col-0 wild type -- PRJNA289110 26971907 0.865 2015/7/20 GSM1834896 mol1_replicate1 internode Col-0 mol1 -- PRJNA291220 52050359 0.8508 2016/3/25 GSM1834893 WT_replicate1 internode Col-0 wild type -- PRJNA291220 48415666 0.8421 2016/3/25 GSM1836063 smax1_2_replicat1 seedlings Col-0 smax1-2 -- PRJNA291424 24710679 0.8096 2019/1/2 GSM1836060 smxl4_1smxl5_1_replicat1 seedlings Col-0 smxl4-1 smxl5-1 -- PRJNA291424 25396169 0.7793 2019/1/2 GSM1836057 smxl5_1_replicat1 seedlings Col-0 smxl5-1 -- PRJNA291424 24246624 0.7609 2019/1/2 GSM1836054 WT_replicat1 seedlings Col-0 wild type -- PRJNA291424 25899062 0.8293 2019/1/2 SRX1133330 RNA-seq of dbr1-2 mutant replicate 1 inflorescence Col-0 dbr1-2 mutant -- PRJNA291954 8974207 0.9217 2016/8/4 SRX1133307 RNA-seq of Columbia replicate 1 inflorescence Col-0 wild type -- PRJNA291954 8237530 0.9209 2016/8/4 GSM1858955 brm-1 rep1 seedlings Col-0 brm-1 -- PRJNA293514 30451814 0.9395 2016/3/28 GSM1858961 brm-1 ref6-1 rep1 seedlings Col-0 brm-1 ref6-1 -- PRJNA293514 24671936 0.9226 2016/3/28 GSM1858958 ref6-1 rep1 seedlings Col-0 ref6-1 -- PRJNA293514 25460027 0.9349 2016/3/28 GSM1858952 WT rep1 seedlings Col-0 wild type -- PRJNA293514 29082730 0.9264 2016/3/28 GSM1864965 Type-A-control-10dpi-Rep1 root Col-0 Type-A mutant -- PRJNA294313 9761873 0.9332 2015/11/19 GSM1864953 Type-A-control-4dpi-Rep1 root Col-0 Type-A mutant -- PRJNA294313 10924107 0.9251 2015/11/19 GSM1864966 Type-A-infected-10dpi-Rep1 root Col-0 Type-A mutant -- PRJNA294313 8269285 0.868 2015/11/19 GSM1864964 Col-infected-10dpi-Rep1 root Col-0 wild type Heterodera schachti nematodes 10dpi PRJNA294313 11891142 0.8955 2015/11/19 GSM1864952 Col-infected-4dpi-Rep1 root Col-0 wild type Heterodera schachti nematodes 4dpi PRJNA294313 11432823 0.9274 2015/11/19 GSM1864963 Col-control-10dpi-Rep1 root Col-0 wild type Mock PRJNA294313 11140040 0.9443 2015/11/19 GSM1864951 Col-control-4dpi-Rep1 root Col-0 wild type Mock PRJNA294313 11876535 0.938 2015/11/19 SRX1305340 5uM BHTC_shoot_rep1 shoot Col-0 -- BHTC PRJNA297270 51404149 0.8731 2015/10/12 SRX1305342 Mock_shoot_rep1 shoot Col-0 -- Mock PRJNA297270 49884248 0.8778 2015/10/10 SRX1337653 Timecourse: Shoot Apex from Arabidopsis LL52 shoot apex Col-0 -- -- PRJNA297861 32230223 0.8372 2015/10/16 SRX1403723 Un-treated atm mutant- Rep 2 seedlings Col-0 -- -- PRJNA298961 23424097 0.9687 2016/5/1 SRX1403719 X-ray irradiated atm mutant- rep 2 seedlings Col-0 -- -- PRJNA298961 22391325 0.9504 2016/5/1 SRX1403725 Un-treated plants- Rep 2 seedlings Col-0 -- Mock PRJNA298961 30863302 0.911 2016/5/1 SRX1403721 X-ray irradiated WT- rep2 seedlings Col-0 -- X-ray PRJNA298961 29540468 0.9389 2016/5/1 GSM1912474 mRNA-seq Col Rep1 leaves Col-0 -- -- PRJNA299198 24671699 0.9476 2018/11/2 GSM1921018 YFP-POS BioRep1.TechRep1 gynoecium Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 11354206 0.7505 2016/2/29 GSM1921020 YFP-POS BioRep2.TechRep1 gynoecium Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 8289906 0.7474 2016/2/29 GSM1921022 YFP-POS BioRep3.TechRep1 gynoecium Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 9655665 0.7864 2016/2/29 GSM1921034 ALL-SORT BioRep2.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 10088770 0.7132 2016/2/29 GSM1921038 ALL-SORT BioRep4.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 8671500 0.7192 2016/2/29 GSM1921024 NO-SORT BioRep1.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 8821410 0.7601 2016/2/29 GSM1921026 NO-SORT BioRep2.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 10211770 0.7581 2016/2/29 GSM1921028 NO-SORT BioRep3.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 10197878 0.7123 2016/2/29 GSM1921030 NO-SORT BioRep4.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 9433241 0.7748 2016/2/29 GSM1921010 YFP-NEG BioRep1.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 9707895 0.7052 2016/2/29 GSM1921014 YFP-NEG BioRep3.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 9784062 0.7311 2016/2/29 GSM1921016 YFP-NEG BioRep4.TechRep1 inflorescence Col-0 ap1; cal; pAP1::AP1:GR -- PRJNA300452 8412806 0.7183 2016/2/29 SRX1411690 Bio. Rep. 2 leaves Col-0 -- -- PRJNA301055 27537760 0.7073 2015/11/3 GSM1930302 10-day-old mutant rep. 1 embryo Col-0 val1 mutant -- PRJNA301162 18529484 0.9559 2016/2/21 GSM1930305 12-day-old mutant rep. 1 embryo Col-0 val1 mutant -- PRJNA301162 67136023 0.9465 2016/2/21 GSM1930308 13-day-old mutant rep. 1 embryo Col-0 val1 mutant -- PRJNA301162 33947057 0.9602 2016/2/21 GSM1930311 15-day-old mutant rep. 1 embryo Col-0 val1 mutant -- PRJNA301162 28571578 0.9528 2016/2/21 GSM1930314 17-day-old mutant rep. 1 embryo Col-0 val1 mutant -- PRJNA301162 29751153 0.9477 2016/2/21 GSM1930299 8-day-old mutant rep. 1 embryo Col-0 val1 mutant -- PRJNA301162 57466770 0.9374 2016/2/21 GSM1930282 10-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 33685990 0.9506 2016/2/21 GSM1930285 12-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 24951200 0.903 2016/2/21 GSM1930288 13-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 26580816 0.9515 2016/2/21 GSM1930291 15-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 26079876 0.9423 2016/2/21 GSM1930294 17-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 33082367 0.9381 2016/2/21 GSM1930276 7-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 21527590 0.9058 2016/2/21 GSM1930279 8-day-old wild type rep. 1 embryo Col-0 wild type -- PRJNA301162 56168252 0.8893 2016/2/21 GSM1930763 Col-0 WT Rep1 inflorescence Col-0 wild type -- PRJNA301350 48751920 0.956 2016/11/14 GSM1936695 R1_+P0_#04 root Col-0 -- Mock PRJNA301684 16717302 0.9318 2016/3/29 GSM1936704 R2_+P0_#04 root Col-0 -- Mock PRJNA301684 12773858 0.7204 2016/3/29 GSM1936698 R1_-P1_#04 root Col-0 -- Pi starvation 1day PRJNA301684 20442647 0.924 2016/3/29 GSM1936707 R2_-P1_#04 root Col-0 -- Pi starvation 1day PRJNA301684 16133749 0.9006 2016/3/29 GSM1936701 R1_-P3_#04 root Col-0 -- Pi starvation 3day PRJNA301684 20404628 0.929 2016/3/29 GSM1936710 R2_-P3_#04 root Col-0 -- Pi starvation 3day PRJNA301684 14389763 0.8901 2016/3/29 GSM1936677 S1_+P0_#04 shoot Col-0 -- Mock PRJNA301684 15967844 0.9422 2016/3/29 GSM1936686 S2_+P0_#04 shoot Col-0 -- Mock PRJNA301684 13910461 0.9428 2016/3/29 GSM1936680 S1_-P1_#04 shoot Col-0 -- Pi starvation 1day PRJNA301684 16784034 0.9366 2016/3/29 GSM1936689 S2_-P1_#04 shoot Col-0 -- Pi starvation 1day PRJNA301684 13877491 0.9442 2016/3/29 GSM1936683 S1_-P3_#04 shoot Col-0 -- Pi starvation 3day PRJNA301684 15290096 0.9358 2016/3/29 GSM1936692 S2_-P3_#04 shoot Col-0 -- Pi starvation 3day PRJNA301684 12145448 0.9461 2016/3/29 GSM1936762 ABA 1h rep1 seedlings Col-0 -- ABA 1h PRJNA301696 71706534 0.7138 2017/4/5 GSM1936765 ABA 3h rep1 seedlings Col-0 -- ABA 3h PRJNA301696 72769220 0.7485 2017/4/5 SRX1427112 Col_1 seedlings Col-0 -- Mock PRJNA301771 18759743 0.7036 2016/5/19 GSM1938991 mapkkk5_mock_rep1 seedlings Col-0 mapkkk5 Mock PRJNA302003 18925087 0.9307 2017/1/5 GSM1938992 mapkkk5_chitin_rep1 seedlings Col-0 mapkkk5 chitin PRJNA302003 20452007 0.9221 2017/1/5 GSM1938989 Col_mock_rep1 seedlings Col-0 wild type Mock PRJNA302003 19836327 0.9298 2017/1/5 GSM1938990 Col_chitin_rep1 seedlings Col-0 wild type chitin PRJNA302003 17422052 0.9365 2017/1/5 GSM1939312 Col-0 P+_1 root Col-0 wild type Mock PRJNA302108 32334932 0.854 2016/1/4 GSM1939314 Col-0 P-_3 root Col-0 wild type Pi starvation PRJNA302108 33138145 0.8446 2016/1/4 GSM1942140 WT_RNAseq_1 aerial seedling Col-0 wild type -- PRJNA302602 13636455 0.7959 2016/7/11 GSM1942137 met1_epiRIL_01_RNAseq_1 leaves Col-0 met1 epiRIL 01 -- PRJNA302602 10389521 0.8416 2016/7/11 GSM1942134 Col-0_RNAseq_1 leaves Col-0 wild type -- PRJNA302602 7793352 0.8443 2016/7/11 GSM1945020 cob1 seedlings Col-0 cob-6 -- PRJNA302786 27809394 0.8668 2015/12/31 GSM1945024 cobsfr1 seedlings Col-0 cob-6sfr6-3 -- PRJNA302786 29048263 0.7769 2015/12/31 GSM1945022 sfr1 seedlings Col-0 sfr6-3 -- PRJNA302786 27045217 0.8633 2015/12/31 GSM1945018 WT1 seedlings Col-0 wild type -- PRJNA302786 27192657 0.8761 2015/12/31 SRX1446086 WT-es1 shoot Col-0 -- -- PRJNA303157 13662124 0.916 2017/1/5 SRX1446235 WT-p1 shoot Col-0 -- -- PRJNA303157 13905289 0.919 2017/1/5 SRX1446033 pho1-es1 shoot Col-0 -- -- PRJNA303157 13915258 0.8814 2017/1/5 SRX1446207 pho1-p1 shoot Col-0 -- -- PRJNA303157 14677882 0.9216 2017/1/5 SRX1446121 pho2-es1 shoot Col-0 -- -- PRJNA303157 13183046 0.9138 2017/1/5 SRX1446238 pho2-p1 shoot Col-0 -- -- PRJNA303157 14590646 0.8733 2017/1/5 GSM1958070 fip37-4 LEC1:FIP37 1 whole plant Col-0 fip37-4 LEC1 -- PRJNA304437 32560470 0.8951 2016/7/25 GSM1958067 wild type 1 whole plant Col-0 wild type -- PRJNA304437 30461336 0.9154 2016/7/25 SRX1469596 Col-0 4 hour air RNAseq, rep1 seedlings Col-0 -- Mock PRJNA305309 21288888 0.9044 2016/12/7 SRX1469689 Col-0 4 hour ethylene RNAseq, rep1 seedlings Col-0 -- ethylene 4h PRJNA305309 21121664 0.9037 2016/12/7 SRX1518946 Arabidopsis_hac1_mutant_senescence_080380_2 rosette leaf Col-0 -- -- PRJNA308047 15294144 0.893 2016/1/7 SRX1518949 Arabidopsis_hac1_mutant_senescence_136314_1 rosette leaf Col-0 -- -- PRJNA308047 30436624 0.7816 2016/1/7 SRX1518947 Arabidopsis_hac1_mutant_senescence_WT_1 rosette leaf Col-0 -- -- PRJNA308047 12673567 0.8941 2016/1/7 GSM2028156 Root_Pi-_polyA+_Rep1 root Col-0 wild type P-deHicient PRJNA308080 18224202 0.7037 2016/8/31 GSM2028158 Shoot_Pi+_polyA+_Rep1 shoot Col-0 wild type Mock PRJNA308080 12360875 0.9538 2016/8/31 GSM2028159 Shoot_Pi+_polyA-_Rep1 shoot Col-0 wild type Mock PRJNA308080 16328594 0.9079 2016/8/31 GSM2028160 Shoot_Pi-_polyA+_Rep1 shoot Col-0 wild type P-deHicient PRJNA308080 13077945 0.8956 2016/8/31 GSM2028161 Shoot_Pi-_polyA-_Rep1 shoot Col-0 wild type P-deHicient PRJNA308080 11926420 0.9108 2016/8/31 GSM2042527 cat2 0h photorespiratory stress rep1 shoot Col-0 cat2 -- PRJNA309285 29625586 0.936 2016/7/28 GSM2042539 cat2 24h photorespiratory stress rep1 shoot Col-0 cat2 -- PRJNA309285 32303733 0.9307 2016/7/28 GSM2042533 cat2shr 0h photorespiratory stress rep1 shoot Col-0 cat2xshr -- PRJNA309285 32189730 0.9397 2016/7/28 GSM2042545 cat2shr 24h photorespiratory stress rep1 shoot Col-0 cat2xshr -- PRJNA309285 42269081 0.9435 2016/7/28 GSM2042530 shr 0h photorespiratory stress rep1 shoot Col-0 shr -- PRJNA309285 31496906 0.9358 2016/7/28 GSM2042542 shr 24h photorespiratory stress rep1 shoot Col-0 shr -- PRJNA309285 29895774 0.9422 2016/7/28 GSM2042524 Col-0 0h photorespiratory stress rep1 shoot Col-0 wild type Mock PRJNA309285 34556216 0.9296 2016/7/28 GSM2042536 Col-0 24h photorespiratory stress rep1 shoot Col-0 wild type photorespiratory stress 24h PRJNA309285 28053472 0.9325 2016/7/28 GSM2045514 cat2-2 gox1 High light rep1 leaves Col-0 cat2-2, gox1 High light and CO2 PRJNA309654 23433535 0.9239 2016/6/13 GSM2045511 cat2-2 gox1 High CO2 rep1 leaves Col-0 cat2-2, gox1 Mock PRJNA309654 21634159 0.9218 2016/6/13 GSM2045520 cat2-2 gox2 High light rep1 leaves Col-0 cat2-2, gox2 High light and CO2 PRJNA309654 20811152 0.9265 2016/6/13 GSM2045517 cat2-2 gox2 High CO2 rep1 leaves Col-0 cat2-2, gox2 Mock PRJNA309654 21673529 0.9196 2016/6/13 GSM2045526 cat2-2 High light rep1 leaves Col-0 cat2-2 High light and CO2 PRJNA309655 23314035 0.9252 2016/6/13 GSM2045523 cat2-2 High CO2 rep1 leaves Col-0 cat2-2 Mock PRJNA309655 23737363 0.9128 2016/6/13 GSM2051717 pdx3-3 rep 1 rosette leaf Col-0 pdx3-3 (SALK_054167C) -- PRJNA310312 19921757 0.7656 2016/2/3 GSM2051720 pdx3-4 rep 1 rosette leaf Col-0 pdx3-4 (GK-260E03) -- PRJNA310312 21933039 0.9082 2016/2/3 GSM2051714 Col-0 rep 1 rosette leaf Col-0 wild type -- PRJNA310312 20351530 0.893 2016/2/3 GSM2253891 ago7_rep1 inflorescence Col-0 ago7 mutant -- PRJNA310776 38079401 0.8072 2016/11/30 GSM2253890 rdr6_rep1 inflorescence Col-0 rdr6 mutant -- PRJNA310776 36705975 0.8096 2016/11/30 GSM2253889 WT_rep1 inflorescence Col-0 wild type -- PRJNA310776 36145833 0.8176 2016/11/30 SRX1597409 nuc1_polyA_RNA_1 shoot Col-0 nuc1-2 -- PRJNA312431 46184089 0.9107 2017/2/16 SRX1597284 WT_polyA_RNA_1 shoot Col-0 wild type -- PRJNA312431 43731338 0.9098 2017/2/16 SRX1594279 lgo-2 rep. 1 sepal Col-0 lgo-2 -- PRJNA312524 33257356 0.8723 2016/3/3 GSM2078418 RNAseq round 2 atmorc1/2/4/5/6/7 rep 1 leaves Col-0 atmorc1/2/4/5/6/7 -- PRJNA314105 7625910 0.8708 2016/5/11 GSM2078398 RNAseq round 1 atmorc4 rep 1 leaves Col-0 atmorc4 -- PRJNA314105 12804844 0.8476 2016/5/11 GSM2078415 RNAseq round 2 atmorc4/6/7 rep 1 leaves Col-0 atmorc4/6/7 -- PRJNA314105 8030755 0.8658 2016/5/11 GSM2078403 RNAseq round 1 atmorc4/7 rep 1 leaves Col-0 atmorc4/7 -- PRJNA314105 17132966 0.8576 2016/5/11 GSM2078409 RNAseq round 2 atmorc6 rep 1 leaves Col-0 atmorc4/7 -- PRJNA314105 6704352 0.877 2016/5/11 GSM2078412 RNAseq round 2 atmorc4/7 rep 1 leaves Col-0 atmorc6 -- PRJNA314105 8016831 0.8794 2016/5/11 GSM2078400 RNAseq round 1 atmorc7 rep 1 leaves Col-0 atmorc7 -- PRJNA314105 13110875 0.8546 2016/5/11 GSM2078395 RNAseq round 1 wt rep 1 leaves Col-0 wild type -- PRJNA314105 11173983 0.8517 2016/5/11 GSM2078406 RNAseq round 2 wt rep 1 leaves Col-0 wild type -- PRJNA314105 6596919 0.8769 2016/5/11 GSM2081559 hda5-1 rep1 seedlings Col-0 hda5 -/- -- PRJNA314484 27742928 0.7632 2016/8/2 GSM2081556 hda6-6 rep1 seedlings Col-0 hda6 -/- -- PRJNA314484 27720777 0.795 2016/8/2 GSM2081563 hda9-1 rep2 seedlings Col-0 hda9 -/- -- PRJNA314484 19312340 0.927 2016/8/2 GSM2081553 Col rep1 seedlings Col-0 wild type -- PRJNA314484 25436893 0.8425 2016/8/2 GSM2082846 pifq dark Linc rep1 seedlings Col-0 pif1pif3pif4pif5 -- PRJNA314522 17939688 0.8071 2016/3/9 GSM2082843 pifq dark rep1 seedlings Col-0 pif1pif3pif4pif5 -- PRJNA314522 19646235 0.839 2016/3/9 GSM2082837 WT dark rep1 seedlings Col-0 wild type Mock PRJNA314522 21889430 0.8734 2016/3/9 GSM2082840 WT dark Linc rep1 seedlings Col-0 wild type darkness and Lincomycin PRJNA314522 15138656 0.8527 2016/3/9 GSM2083585 jazQ_rep1 whole plant Col-0 jazQ -- PRJNA314692 19249905 0.881 2016/8/30 GSM2083591 jazQphyB_rep1 whole plant Col-0 jazQ phyB-9 -- PRJNA314692 24743349 0.8157 2016/8/30 GSM2083588 phyB_rep1 whole plant Col-0 phyB-9 -- PRJNA314692 14559734 0.8276 2016/8/30 GSM2083582 Col-0_rep1 whole plant Col-0 wild type -- PRJNA314692 27870565 0.8755 2016/8/30 SRX1623468 ein3 P-R1 seedlings Col-0 -- -- PRJNA314824 20623742 0.8266 2018/6/20 SRX1623470 ein3eil1 P-R1 seedlings Col-0 -- -- PRJNA314824 21170339 0.8182 2016/3/17 SRX1623464 hps5 P+R1 seedlings Col-0 -- -- PRJNA314824 25604377 0.8339 2018/6/20 SRX1623466 hps5 P-R1 seedlings Col-0 -- -- PRJNA314824 21151748 0.8347 2018/6/20 SRX1623458 Col-0 P+R1 seedlings Col-0 -- Mock PRJNA314824 19695994 0.8713 2018/6/20 SRX1623460 Col-0 P-R1 seedlings Col-0 -- Pi starvation PRJNA314824 17947845 0.8736 2018/6/20 SRX1639388 RNAseq of Arabidopsis thaliana : 3-7-1 rep1 seedlings Col-0 -- -- PRJNA315353 24633062 0.9584 2016/8/24 SRX1639391 RNAseq of Arabidopsis thaliana : 45-3-1 rep1 seedlings Col-0 -- -- PRJNA315353 23435720 0.917 2016/8/24 SRX1639393 RNAseq of Arabidopsis thaliana : ST rep1 seedlings Col-0 -- -- PRJNA315353 25622611 0.9533 2016/8/24 SRX1639396 RNAseq of Arabidopsis thaliana : ST_3 rep1 seedlings Col-0 -- -- PRJNA315353 22829345 0.925 2016/8/24 GSM2090468 CLN1-1 root Col-0 Col-0 -- PRJNA315374 9245570 0.8139 2018/2/10 GSM2090471 CLN2-1 root Col-0 Col-0 -- PRJNA315374 10829068 0.7929 2018/2/10 GSM2090474 CLN3-1 root Col-0 Col-0 -- PRJNA315374 11777560 0.8174 2018/2/10 GSM2090459 CRN1-1 root Col-0 Col-0 -- PRJNA315374 11184165 0.8134 2018/2/10 GSM2090462 CRN2-1 root Col-0 Col-0 -- PRJNA315374 11955768 0.8226 2018/2/10 GSM2090465 CRN3-1 root Col-0 Col-0 -- PRJNA315374 10211230 0.805 2018/2/10 SRX1700806 Drought main treatment, B.cinerea pre-treatment; 5 d after water withold; Biological replicate 1 leaves Col-0 -- 5d drought, B.cinerea pre-treatment PRJNA315516 12277074 0.9243 2016/4/17 SRX1700826 Drought main treatment, P.rapae pre-treatment; 6 d after water withold; Biological replicate 1 leaves Col-0 -- 6d drought, P.rapae pre-treatment PRJNA315516 13906383 0.9206 2016/4/17 SRX1700844 Drought main treatment, P.rapae pre-treatment; 7 d after water withold; Biological replicate 1 leaves Col-0 -- 7d drought, P.rapae pre-treatment PRJNA315516 18036354 0.886 2016/4/17 SRX1700830 Drought main treatment, B.cinerea pre-treatment; 7 d after water withold; Biological replicate 1 leaves Col-0 -- 7d drought, B.cinerea pre-treatment PRJNA315516 10616837 0.9304 2016/4/17 SRX1705072 B.cinerea main treatment; 18 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main 18h PRJNA315516 10342352 0.8769 2016/4/21 SRX1705097 B.cinerea main treatment; 24 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main 24h PRJNA315516 11952699 0.8708 2016/4/21 SRX1705069 B.cinerea main treatment, P.rapae pre-treatment; 12 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, P.rapae pre-treatment; 12 h aHter innoculation. PRJNA315516 10807441 0.8528 2016/4/21 SRX1705094 B.cinerea main treatment, P.rapae pre-treatment; 18 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, P.rapae pre-treatment; 18 h aHter innoculation. PRJNA315516 10303377 0.8659 2016/4/21 SRX1705135 B.cinerea main treatment, P.rapae pre-treatment; 24 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, P.rapae pre-treatment; 24 h aHter innoculation. PRJNA315516 10470810 0.8652 2016/4/21 SRX1705045 B.cinerea main treatment, drought pre-treatment; 12 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, drought pre-treatment; 12 h aHter innoculation. PRJNA315516 10918947 0.876 2016/4/21 SRX1705079 B.cinerea main treatment, drought pre-treatment; 18 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, drought pre-treatment; 18 h aHter innoculation. PRJNA315516 10649006 0.8359 2016/4/21 SRX1705122 B.cinerea main treatment, drought pre-treatment; 24 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, drought pre-treatment; 24 h aHter innoculation. PRJNA315516 17506263 0.8096 2016/4/21 SRX1704982 B.cinerea main treatment, drought pre-treatment; 6 h after innoculation; Biological replicate 1 leaves Col-0 -- B.cinerea main treatment, drought pre-treatment; 6 h aHter innoculation. PRJNA315516 9755159 0.9125 2016/4/21 SRX1700853 Control for Pieris main-treatment, 3h and for 7 days after water withhold + 1 d water recovery; Biological replicate 1 leaves Col-0 -- Control Hor Pieris main-treatment, 3h and Hor 7 days aHter water withhold + 1 d water recovery. PRJNA315516 12432053 0.9095 2016/4/17 SRX1700846 Drought main treatment, B.cinerea pre-treatment; 7 days after water withold + 1 d water recovery; Biological replicate 1 leaves Col-0 -- Drought main treatment, B.cinerea pre-treatment; 7 days aHter water withold + 1 d water recovery. PRJNA315516 10388659 0.9165 2016/4/17 SRX1700872 Drought main treatment, P.rapae pre-treatment; 7 days after water withold + 1 d water recovery; Biological replicate 1 leaves Col-0 -- Drought main treatment, P.rapae pre-treatment; 7 days aHter water withold + 1 d water recovery. PRJNA315516 14461969 0.9173 2016/4/17 SRX1700865 Mock for B.cinerea pre-treatment, Pieris main treatment, 3 h after infestation; Biological replicate 2 leaves Col-0 -- Mock Hor B.cinerea pre-treatment, Pieris main treatment, 3 h aHter inHestation. PRJNA315516 12820896 0.9193 2016/4/17 SRX1700864 Mock for B.cinerea pre-treatment; 7 days after water withold + 1 d water recovery; Biological replicate 1 leaves Col-0 -- Mock Hor B.cinerea pre-treatment; 7 days aHter water withold + 1 d water recovery. PRJNA315516 9696859 0.919 2016/4/17 SRX1705024 P.rapae main treatment, B.cinerea pre-treatment; 12 h after infestation; Biological replicate 1 leaves Col-0 -- P.rapae main treatment, B.cinerea pre-treatment; 12 h aHter inHestation. PRJNA315516 16188062 0.9223 2016/4/21 SRX1705046 P.rapae main treatment, B.cinerea pre-treatment; 6 h after infestation; Biological replicate 2 leaves Col-0 -- P.rapae main treatment, B.cinerea pre-treatment; 6 h aHter inHestation. PRJNA315516 15118040 0.9169 2016/4/21 SRX1705034 P.rapae main treatment, drought pre-treatment; 12 h after infestation; Biological replicate 1 leaves Col-0 -- P.rapae main treatment, drought pre-treatment; 12 h aHter inHestation. PRJNA315516 28473341 0.9221 2016/4/21 SRX1705116 P.rapae main treatment, drought pre-treatment; 24 h after infestation; Biological replicate 1 leaves Col-0 -- P.rapae main treatment, drought pre-treatment; 24 h aHter inHestation. PRJNA315516 20724914 0.9171 2016/4/21 SRX1705065 P.rapae main treatment; 12 h after infestation; Biological replicate 1 leaves Col-0 -- P.rapae main treatment; 12 h aHter inHestation. PRJNA315516 13031098 0.9268 2016/4/21 SRX1705132 P.rapae main treatment; 24 h after infestation; Biological replicate 1 leaves Col-0 -- P.rapae main treatment; 24 h aHter inHestation. PRJNA315516 15013568 0.9184 2016/4/21 SRX1700863 Drought main treatment; 5 d after water withold; Biological replicate 1 leaves Col-0 -- drought 5day PRJNA315516 9984407 0.9197 2016/4/17 SRX1700820 Drought main treatment; 6 d after water withold; Biological replicate 1 leaves Col-0 -- drought 6day PRJNA315516 12742331 0.924 2016/4/17 SRX1700836 Drought main treatment; 7 d after water withold; Biological replicate 1 leaves Col-0 -- drought 7day PRJNA315516 11699888 0.9268 2016/4/17 SRX1700856 Drought main treatment; 7 days after water withold + 1 d water recovery; Biological replicate 1 leaves Col-0 -- water recovery 1day (aHter 7day drought) PRJNA315516 12723439 0.9165 2016/4/18 SRX1639998 RNA-seq_17c_15min_rep1 seedlings Col-0 wild type Mock PRJNA315570 43743114 0.8977 2017/10/11 SRX1640000 RNA-seq_17c_1hr_rep1 seedlings Col-0 wild type Mock PRJNA315570 26425428 0.7788 2017/10/11 SRX1640002 RNA-seq_17c_4hr_rep1 seedlings Col-0 wild type Mock PRJNA315570 11075794 0.8786 2017/10/11 SRX1640004 RNA-seq_27c_15min_rep1 seedlings Col-0 wild type shiHt Hrom 17℃ to 27℃ 15min PRJNA315570 28380142 0.8697 2017/10/11 SRX1640008 RNA-seq_27c_4hr_rep1 seedlings Col-0 wild type shiHt Hrom 17℃ to 27℃ 4h PRJNA315570 52278787 0.8861 2017/10/11 SRX1651350 A. thaliana 5 day old seedling, myb11/myb12/myb111 triple mutant, bio replicate 2 seedlings Col-0 myb11/myb12/myb111 -- PRJNA315850 33694209 0.8568 2016/9/4 SRX1651002 A. thalina 5 day seedling wt, bio replicate 1 seedlings Col-0 wild type -- PRJNA315850 33737347 0.8584 2016/9/4 SRX1657497 WT rep1 seedlings Col-0 -- -- PRJNA316129 23276320 0.9332 2017/9/25 SRX1657500 acc1-5 rep1 seedlings Col-0 -- -- PRJNA316129 22972003 0.935 2017/9/25 GSM2098527 pifq cotyledon dark rep1 cotyledon Col-0 pifq -- PRJNA316322 38084790 0.9335 2016/5/3 GSM2098509 wild type cotyledon dark rep1 cotyledon Col-0 wild type Mock PRJNA316322 27926270 0.92 2016/5/3 GSM2098515 wild type cotyledon dark to light 1h rep1 cotyledon Col-0 wild type dark to light 1h PRJNA316322 27683659 0.8955 2016/5/3 GSM2098521 wild type cotyledon dark to light 6h rep1 cotyledon Col-0 wild type dark to light 6h PRJNA316322 33684129 0.8808 2016/5/3 GSM2098530 pifq hypocotyl dark rep1 hypocotyl Col-0 pifq -- PRJNA316322 34272695 0.9396 2016/5/3 GSM2098512 wild type hypocotyl dark rep1 hypocotyl Col-0 wild type Mock PRJNA316322 33402988 0.909 2016/5/3 GSM2098518 wild type hypocotyl dark to light 1h rep1 hypocotyl Col-0 wild type dark to light 1h PRJNA316322 31984728 0.9148 2016/5/3 GSM2098524 wild type hypocotyl dark to light 6h rep1 hypocotyl Col-0 wild type dark to light 6h PRJNA316322 28276287 0.9028 2016/5/3 SRX1665979 Col-0-20-day-seedling Replicate 1 leaves Col-0 -- -- PRJNA316333 6685288 0.9539 2016/5/1 SRX1665984 QQS-RNAi-20-day Rep 1 leaves Col-0 -- -- PRJNA316333 6559432 0.953 2016/5/1 GSM2107331 N2102362 estradiol rep1 rosette leaf Col-0 WRKY75 overexpression 50 μM estradiol PRJNA317229 23124366 0.8657 2016/4/8 GSM2107335 N2102363 estradiol rep1 rosette leaf Col-0 WRKY75 overexpression 50 μM estradiol PRJNA317229 25469670 0.8597 2016/4/8 GSM2107328 Col-0 estradiol rep1 rosette leaf Col-0 wild type 50 μM estradiol PRJNA317229 22262896 0.9265 2016/4/8 GSM2107325 Col-0 water rep1 rosette leaf Col-0 wild type Mock PRJNA317229 22310337 0.9315 2016/4/8 GSM2107305 Col-0 ctrl rep1 rosette leaf Col-0 wild type Mock PRJNA317230 22323544 0.9253 2016/4/8 GSM2107309 Col-0 ozone rep1 rosette leaf Col-0 wild type ozone PRJNA317230 22320810 0.9092 2016/4/8 GSM2107313 wrky25 wrky33 ctrl rep1 rosette leaf Col-0 wrky25 wrky33 Mock PRJNA317230 22323376 0.9243 2016/4/8 GSM2107316 wrky25 wrky33 ozone rep1 rosette leaf Col-0 wrky25 wrky33 ozone PRJNA317230 22289450 0.9307 2016/4/8 GSM2107319 wrky75 ctrl rep1 rosette leaf Col-0 wrky75 Mock PRJNA317230 22327373 0.9229 2016/4/8 GSM2107322 wrky75 ozone rep1 rosette leaf Col-0 wrky75 ozone PRJNA317230 22156298 0.909 2016/4/8 GSM2111790 hda9-ES-repeat1 leaves Col-0 hda9-mutant -- PRJNA317722 15406096 0.717 2016/11/14 GSM2111792 pwr-ES-repeat1 leaves Col-0 pwr-mutant -- PRJNA317722 14394283 0.7202 2016/11/14 SRX1688674 Heat 1 aerial seedling Col-0 -- heat PRJNA317804 39859346 0.9297 2018/1/31 SRX1688672 Wild-type1 aerial seedling Col-0 wild type Mock PRJNA317804 42108453 0.9276 2018/1/31 GSM2124007 100μM_AZA-treated_1 seedlings Col-0 -- AZA PRJNA318516 40309684 0.8998 2016/6/27 GSM2124968 BIC1ox_B2_rep1 seedlings Col-0 BIC1ox blue light, 2hr PRJNA318638 26876962 0.9674 2016/12/5 GSM2124971 BIC1ox_D_rep1 seedlings Col-0 BIC1ox dark PRJNA318638 24155007 0.9649 2016/12/5 GSM2124974 c1c2_B2_rep1 seedlings Col-0 cry1cry2 blue light, 2hr PRJNA318638 28803601 0.9654 2016/12/5 GSM2124977 c1c2_D_rep1 seedlings Col-0 cry1cry2 dark PRJNA318638 21196496 0.9629 2016/12/5 GSM2124980 col_B2_rep1 seedlings Col-0 wild type blue PRJNA318638 34429404 0.9639 2016/12/5 SRX1712783 Col-0, 2h, rep1 leaves Col-0 Col-0 -- PRJNA318878 31694553 0.9042 2017/12/15 SRX1712786 35S:RPS4, 2h, rep1 leaves Col-0 Col-0 35S:RPS4-HS -- PRJNA318878 32994254 0.9124 2017/12/15 SRX1712764 MLA1 expressing ppsdes plants challenged with Bgh A6 isolate at 12hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 24571639 0.8435 2017/12/15 SRX1712765 MLA1 expressing ppsdes plants challenged with Bgh A6 isolate at 18hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 21313757 0.8424 2017/12/15 SRX1712766 MLA1 expressing ppsdes plants challenged with Bgh A6 isolate at 24hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 20535618 0.8581 2017/12/15 SRX1712761 MLA1 expressing ppsdes plants challenged with Bgh K1 isolate at 12hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 20293388 0.7789 2017/12/15 SRX1712762 MLA1 expressing ppsdes plants challenged with Bgh K1 isolate at 18hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 22333895 0.7334 2017/12/15 SRX1712763 MLA1 expressing ppsdes plants challenged with Bgh K1 isolate at 24hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 30846744 0.7967 2017/12/15 SRX1712760 MLA1 expressing ppsdes plants unchallenged at 18hpi, replicate 1 lower leaf epidermis Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) 35S:MLA1-HA -- PRJNA318879 26845797 0.9063 2017/12/15 SRX1712715 DEXp:MLACC-mYFP plants infiltrated with dexamethasone, 0 h, rep1 leaves Col-0 Col-0 DEXp:MLACC-mYFP -- PRJNA318880 23271840 0.8341 2017/12/15 SRX1712718 DEXp:MLACC-mYFP plants infiltrated with dexamethasone, 2 h, rep1 leaves Col-0 Col-0 DEXp:MLACC-mYFP -- PRJNA318880 23072876 0.8409 2017/12/15 SRX1712721 DEXp:MLACC-mYFP plants infiltrated with dexamethasone, 4 h, rep1 leaves Col-0 Col-0 DEXp:MLACC-mYFP -- PRJNA318880 22137594 0.8525 2017/12/15 SRX1712724 DEXp:MLACC-mYFP plants infiltrated with dexamethasone, 6 h, rep1 leaves Col-0 Col-0 DEXp:MLACC-mYFP -- PRJNA318880 27972955 0.8546 2017/12/15 SRX1712727 DEXp:MLACC-mYFP plants infiltrated with dexamethasone, 8 h, rep1 leaves Col-0 Col-0 DEXp:MLACC-mYFP -- PRJNA318880 29293005 0.8619 2017/12/15 SRX1712700 DEXp:mYFP plants infiltrated with dexamethasone, 0 h, rep1 leaves Col-0 Col-0 DEXp:mYFP Mock PRJNA318880 22404856 0.8191 2017/12/15 SRX1712703 DEXp:mYFP plants infiltrated with dexamethasone, 2 h, rep1 leaves Col-0 Col-0 DEXp:mYFP dexamethasone_2h PRJNA318880 29717868 0.8337 2017/12/15 SRX1712706 DEXp:mYFP plants infiltrated with dexamethasone, 4 h, rep1 leaves Col-0 Col-0 DEXp:mYFP dexamethasone_4h PRJNA318880 25206244 0.8158 2017/12/15 SRX1712709 DEXp:mYFP plants infiltrated with dexamethasone, 6 h, rep1 leaves Col-0 Col-0 DEXp:mYFP dexamethasone_6h PRJNA318880 26831663 0.8257 2017/12/15 SRX1712712 DEXp:mYFP plants infiltrated with dexamethasone, 8 h, rep1 leaves Col-0 Col-0 DEXp:mYFP dexamethasone_8h PRJNA318880 26091517 0.8245 2017/12/15 SRX1712730 ppsdes plants infiltrated with dexamethasone, 0 h, rep1 leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) -- PRJNA318880 25308796 0.8877 2017/12/15 SRX1712733 ppsdes plants infiltrated with dexamethasone, 2 h, rep1 leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) -- PRJNA318880 23927502 0.8996 2017/12/15 SRX1712736 ppsdes plants infiltrated with dexamethasone, 4 h, rep1 leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) -- PRJNA318880 23502759 0.8983 2017/12/15 SRX1712739 ppsdes plants infiltrated with dexamethasone, 6 h, rep1 leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) -- PRJNA318880 23360864 0.909 2017/12/15 SRX1712742 ppsdes plants infiltrated with dexamethasone, 8 h, rep1 leaves Col-0 Col-0 pen2-1 pad4-1 sag101-2 dde2-2 ein2-1 sid2-2 (ppsdes) -- PRJNA318880 26470093 0.8655 2017/12/15 SRX1714278 35S:RPS4, 4h, rep1 leaves Col-0 Col-0 35S:RPS4-HS -- PRJNA318918 27139948 0.9089 2017/12/15 SRX1714281 35S:RPS4, 8h, rep1 leaves Col-0 Col-0 35S:RPS4-HS -- PRJNA318918 29042494 0.8764 2017/12/15 SRX1714275 35S:RPS4, T0, rep1 leaves Col-0 Col-0 35S:RPS4-HS -- PRJNA318918 37384089 0.8704 2017/12/15 SRX1714287 Col-0, 4h, rep1 leaves Col-0 wild type 28°C to 19°C 4h PRJNA318918 30972007 0.8796 2017/12/15 SRX1714290 Col-0, 8h, rep1 leaves Col-0 wild type 28°C to 19°C 8h PRJNA318918 30578524 0.9028 2017/12/15 SRX1714284 Col-0, T0, rep1 leaves Col-0 wild type Mock PRJNA318918 31818102 0.9201 2017/12/15 GSM2131016 RNAseq_AT3G45810_DIG1_Dex_4h_rep1 seedlings Col-0 -- 10 uM dexamethasone, 4 hours PRJNA319316 13836969 0.8083 2017/2/6 GSM2131018 RNAseq_AT5G50360_DIG2_Dex_4h_rep1 seedlings Col-0 -- 10 uM dexamethasone, 4 hours PRJNA319316 21325499 0.8127 2017/2/6 GSM2131014 RNAseq_GFP_Dex_4h_rep1 seedlings Col-0 -- 10 uM dexamethasone, 4 hours PRJNA319316 19800471 0.7983 2017/2/6 GSM2131022 RNAseq_AT3G45810_DIG1_Dex_10d_rep1 seedlings Col-0 -- 500 nM dexamethasone, 10 days PRJNA319316 18376783 0.8249 2017/2/6 GSM2131020 RNAseq_GFP_Dex_10d_rep1 seedlings Col-0 -- 500 nM dexamethasone, 10 days PRJNA319316 19276901 0.777 2017/2/6 GSM2130989 RNAseq_ABA_12h_rep1 seedlings Col-0 -- ABA 12h PRJNA319318 27518796 0.8189 2017/2/6 GSM2130983 RNAseq_ABA_01h_rep1 seedlings Col-0 -- ABA 1h PRJNA319318 22202488 0.8039 2017/2/6 GSM2130991 RNAseq_ABA_24h_rep1 seedlings Col-0 -- ABA 24h PRJNA319318 26743792 0.7696 2017/2/6 GSM2130993 RNAseq_ABA_36h_rep1 seedlings Col-0 -- ABA 36h PRJNA319318 23002249 0.8638 2017/2/6 GSM2130985 RNAseq_ABA_04h_rep1 seedlings Col-0 -- ABA 4h PRJNA319318 28861105 0.8001 2017/2/6 GSM2130995 RNAseq_ABA_60h_rep1 seedlings Col-0 -- ABA 60h PRJNA319318 21669039 0.8276 2017/2/6 GSM2130987 RNAseq_ABA_08h_rep1 seedlings Col-0 -- ABA 8h PRJNA319318 26608558 0.7683 2017/2/6 GSM2130984 RNAseq_EtOH_01h_rep1 seedlings Col-0 -- Mock PRJNA319318 22953811 0.7928 2017/2/6 GSM2130986 RNAseq_EtOH_04h_rep1 seedlings Col-0 -- Mock PRJNA319318 28294784 0.7856 2017/2/6 GSM2130988 RNAseq_EtOH_08h_rep1 seedlings Col-0 -- Mock PRJNA319318 24308457 0.8224 2017/2/6 GSM2130990 RNAseq_EtOH_12h_rep1 seedlings Col-0 -- Mock PRJNA319318 33340970 0.8138 2017/2/6 GSM2130992 RNAseq_EtOH_24h_rep1 seedlings Col-0 -- Mock PRJNA319318 23586216 0.7839 2017/2/6 GSM2130994 RNAseq_EtOH_36h_rep1 seedlings Col-0 -- Mock PRJNA319318 23935596 0.8307 2017/2/6 GSM2130996 RNAseq_EtOH_60h_rep1 seedlings Col-0 -- Mock PRJNA319318 22479281 0.8394 2017/2/6 GSM2131137 mock_12h rep1 leaves Col-0 estradiol-inducible-promoter Mock PRJNA319370 28924422 0.8405 2016/9/27 GSM2131143 mock_24h rep1 leaves Col-0 estradiol-inducible-promoter Mock PRJNA319370 35946745 0.8391 2016/9/27 GSM2131131 mock_6h rep1 leaves Col-0 estradiol-inducible-promoter Mock PRJNA319370 37060355 0.8398 2016/9/27 GSM2131140 estradiol_12h rep1 leaves Col-0 estradiol-inducible-promoter estradiol_12h PRJNA319370 42224288 0.8482 2016/9/27 GSM2131146 estradiol_24h rep1 leaves Col-0 estradiol-inducible-promoter estradiol_24h PRJNA319370 32956153 0.8343 2016/9/27 GSM2131134 estradiol_6h rep1 leaves Col-0 estradiol-inducible-promoter estradiol_6h PRJNA319370 25848087 0.8365 2016/9/27 GSM2144083 clf/swn-16 stem Col-0 clf/swn Injury + Auxin time 55h PRJNA320769 14411471 0.9178 2017/1/11 GSM2144077 clf/swn-10 stem Col-0 clf/swn auxin time 55h PRJNA320769 15720813 0.9234 2017/1/11 GSM2144068 clf/swn-1 stem Col-0 clf/swn control time 0 PRJNA320769 16452375 0.9224 2017/1/11 GSM2144074 clf/swn-7 stem Col-0 clf/swn mock control time 55h PRJNA320769 14778888 0.922 2017/1/11 GSM2144065 Col-15 stem Col-0 wild type Injury + Auxin time 55h PRJNA320769 15996277 0.9311 2017/1/11 GSM2144051 Col-1 stem Col-0 wild type Mock PRJNA320769 12494055 0.9342 2017/1/11 GSM2144059 Col-9 stem Col-0 wild type auxin time 55h PRJNA320769 14792184 0.9235 2017/1/11 GSM2144056 Col-6 stem Col-0 wild type mock control time 55h PRJNA320769 13538483 0.929 2017/1/11 GSM2144569 TP0 white light cotyledon rep1 cotyledon Col-0 -- Mock PRJNA320878 28780050 0.8939 2017/1/17 GSM2144597 TP180 white light cotyledon rep1 cotyledon Col-0 -- Mock PRJNA320878 34360268 0.8587 2017/1/17 GSM2144581 TP45 white light cotyledon rep1 cotyledon Col-0 -- Mock PRJNA320878 31783244 0.8828 2017/1/17 GSM2144589 TP90 white light cotyledon rep1 cotyledon Col-0 -- Mock PRJNA320878 42065422 0.8374 2017/1/17 GSM2144573 TP15 white light cotyledon rep1 cotyledon Col-0 -- TP15min_high R/HR PRJNA320878 30241557 0.8951 2017/1/17 GSM2144577 TP15 supplemental far-red light cotyledon rep1 cotyledon Col-0 -- supplemental Har-red light 15min PRJNA320878 32817661 0.8862 2017/1/17 GSM2144601 TP180 supplemental far-red light cotyledon rep1 cotyledon Col-0 -- supplemental Har-red light 180min PRJNA320878 33356405 0.8724 2017/1/17 GSM2144585 TP45 supplemental far-red light cotyledon rep1 cotyledon Col-0 -- supplemental Har-red light 45min PRJNA320878 31420518 0.8864 2017/1/17 GSM2144593 TP90 supplemental far-red light cotyledon rep1 cotyledon Col-0 -- supplemental Har-red light 90min PRJNA320878 28709258 0.8782 2017/1/17 GSM2144570 TP0 white light hypocotyl rep1 hypocotyl Col-0 -- Mock PRJNA320878 29365281 0.8897 2017/1/17 GSM2144598 TP180 white light hypocotyl rep3 hypocotyl Col-0 -- Mock PRJNA320878 28588967 0.8985 2017/1/17 GSM2144582 TP45 white light hypocotyl rep1 hypocotyl Col-0 -- Mock PRJNA320878 32992468 0.8787 2017/1/17 GSM2144590 TP90 white light hypocotyl rep1 hypocotyl Col-0 -- Mock PRJNA320878 33377684 0.8861 2017/1/17 GSM2144574 TP15 white light hypocotyl rep1 hypocotyl Col-0 -- TP15min_high R/HR PRJNA320878 31914933 0.8924 2017/1/17 GSM2144578 TP15 supplemental far-red light hypocotyl rep1 hypocotyl Col-0 -- supplemental Har-red light 15min PRJNA320878 28229087 0.91 2017/1/17 GSM2144602 TP180 supplemental far-red light hypocotyl rep1 hypocotyl Col-0 -- supplemental Har-red light 180min PRJNA320878 32745942 0.8975 2017/1/17 GSM2144586 TP45 supplemental far-red light hypocotyl rep1 hypocotyl Col-0 -- supplemental Har-red light 45min PRJNA320878 32960920 0.8963 2017/1/17 GSM2144594 TP90 supplemental far-red light hypocotyl rep1 hypocotyl Col-0 -- supplemental Har-red light 90min PRJNA320878 32736984 0.9008 2017/1/17 GSM2151150 CysNO treatment: Treat_1 leaves Col-0 wild type CysNO PRJNA321410 96789542 0.8768 2016/5/15 GSM2151147 CysNO treatment: Control_1 leaves Col-0 wild type Mock PRJNA321410 72842020 0.8644 2016/5/15 GSM2159759 amp1-32 mutant rep1 leaves Col-0 amp1-32 knock-out mutant -- PRJNA322179 15461322 0.9817 2017/5/30 GSM2159757 WT rep1 leaves Col-0 wild type -- PRJNA322179 14973560 0.9811 2017/5/30 GSM2166046 Col-0 24 hours 100 uM MG132 1 5DAG seedlings Col-0 Col-0 MG132 24h PRJNA322265 12813801 0.7588 2016/5/23 GSM2166042 Col-0 No Treatment 1 5DAG seedlings Col-0 Col-0 Mock PRJNA322265 22146683 0.7888 2016/5/23 GSM2166048 rpn12a-1 No Treatment 1 5DAG seedlings Col-0 rpn12a-1 Mock PRJNA322265 24321459 0.7924 2016/5/23 GSM2176478 hy5-1 seedlings Col-0 hy5 -- PRJNA322671 8760026 0.7839 2017/1/3 GSM2176476 Q3-1 seedlings Col-0 nf-yc3 c4 c9 -- PRJNA322671 12693887 0.7832 2017/1/3 GSM2176480 Q3hy5-1 seedlings Col-0 nf-yc3 c4 c9 hy5 -- PRJNA322671 10472189 0.7758 2017/1/3 GSM2176474 WT-1 seedlings Col-0 wild type -- PRJNA322671 11042706 0.7791 2017/1/3 SRX1837342 EV_inflorescence_Rep1 inflorescence Col-0 -- -- PRJNA325158 32511030 0.9062 2016/6/10 SRX2009814 CEB_inflorescence_Rep2 inflorescence Col-0 3xHA-VvCEB1-OX -- PRJNA325158 35274181 0.9282 2016/8/9 SRX2009834 WT_inflorescence_Rep1 inflorescence Col-0 wild type -- PRJNA325158 24300656 0.9136 2016/8/9 SRX2009816 CEB1_leaf_Rep3 leaves Col-0 -- -- PRJNA325158 33638168 0.9282 2016/8/9 SRX2009818 EV_leaf_Rep1 leaves Col-0 -- -- PRJNA325158 25225994 0.9271 2016/8/9 SRX2009821 WT_leaf_Rep2 leaves Col-0 wild type -- PRJNA325158 25773054 0.9243 2016/8/9 SRX1837341 CEB1_root_Rep1 root Col-0 -- -- PRJNA325158 33028630 0.9067 2016/6/10 SRX2009820 EV_root_Rep3 root Col-0 -- -- PRJNA325158 34655994 0.9001 2016/8/9 SRX2009822 WT_root_Rep1 root Col-0 wild type -- PRJNA325158 26280800 0.9032 2016/8/9 GSM2209709 WT_10DAG_1 seedlings Col-0 Wild Type -- PRJNA326392 14578745 0.9681 2016/11/14 GSM2209711 a_10DAG_1 seedlings Col-0 atbmi1a single mutant -- PRJNA326392 14982986 0.9638 2016/11/14 GSM2209715 ab_strong_10DAG_1 seedlings Col-0 atbmi1ab strong double mutant -- PRJNA326392 14885215 0.9545 2016/11/14 GSM2209717 abc_10DAG_1 seedlings Col-0 atbmi1abc triple mutant -- PRJNA326392 14832480 0.9629 2016/11/14 GSM2209713 b_10DAG_1 seedlings Col-0 atbmi1b single mutant -- PRJNA326392 15714678 0.9669 2016/11/14 GSM2209789 cbp20 root 4 hour air RNAseq, rep1 root Col-0 cbp20 mutant -- PRJNA326409 23931562 0.8953 2016/10/31 GSM2209791 cbp20 root 4 hour ethylene RNAseq, rep1 root Col-0 cbp20 mutant -- PRJNA326409 17144977 0.8866 2016/10/31 GSM2209785 Col root 4 hour air RNAseq, rep1 root Col-0 wild type Mock PRJNA326409 16483740 0.8569 2016/10/31 GSM2209787 Col root 4 hour ethylene RNAseq, rep1 root Col-0 wild type ethylene 4h PRJNA326409 22709383 0.8805 2016/10/31 GSM2209781 cbp20 shoot 4 hour air RNAseq, rep1 shoot Col-0 cbp20 mutant -- PRJNA326409 31212958 0.8712 2016/10/31 GSM2209783 cbp20 shoot 4 hour ethylene RNAseq, rep1 shoot Col-0 cbp20 mutant -- PRJNA326409 19497113 0.8316 2016/10/31 GSM2209777 Col shoot 4 hour air RNAseq, rep1 shoot Col-0 wild type -- PRJNA326409 20913057 0.8495 2016/10/31 GSM2209779 Col shoot 4 hour ethylene RNAseq, rep1 shoot Col-0 wild type -- PRJNA326409 13934056 0.8317 2016/10/31 SRX1960452 Col_x_Col_1 pistils Col-0 -- Pollinated and incubated Hor 8 hours PRJNA329634 62102958 0.9187 2016/7/26 GSM2242711 hos1-3 rep1 seedlings Col-0 hos1-3 -- PRJNA330620 23165220 0.9282 2016/7/22 GSM2242708 Wild type Columbia rep1 seedlings Col-0 wild type -- PRJNA330620 33759388 0.928 2016/7/22 GSM2242720 DIFOX2_Dex1 seedlings Col-0 DIF-OX2 -- PRJNA330623 10428825 0.9186 2019/1/1 GSM2242718 DIFOX2_GMSUC1 seedlings Col-0 DIF-OX2 -- PRJNA330623 16579379 0.9208 2019/1/1 GSM2242716 Col0_Dex1 seedlings Col-0 wild type Dex1 PRJNA330623 13384222 0.9251 2019/1/1 GSM2242714 Col0_GMSUC1 seedlings Col-0 wild type Mock PRJNA330623 11589940 0.9179 2019/1/1 GSM2257312 TCV infected mutant replicate 1 leaves Col-0 DCL1 homozygous mutant -- PRJNA336058 49910739 0.8411 2017/1/11 GSM2257309 mock mutant replicate 1 leaves Col-0 DCL1 homozygous mutant -- PRJNA336058 42433644 0.8487 2017/1/11 GSM2257303 mock wild type replicate 1 leaves Col-0 wild type Mock PRJNA336058 46406351 0.857 2017/1/11 GSM2257306 TCV infected wild type replicate 1 leaves Col-0 wild type TCV inHected PRJNA336058 41138966 0.8725 2017/1/11 SRX1994731 PAZ-007 Rosette leaves Col-0 arp6 mutant Control conditions PRJNA336152 12058279 0.8896 2019/12/31 SRX1994709 PAZ-011 Rosette leaves Col-0 arp6 mutant Drought stress conditions (withholding water Hor 10 days) PRJNA336152 12352461 0.9029 2019/12/31 SRX1994707 PAZ-001 Rosette leaves Col-0 wild type Control conditions PRJNA336152 11716219 0.8935 2019/12/31 SRX1994728 PAZ-004 Rosette leaves Col-0 wild type Drought stress conditions (withholding water Hor 10 days) PRJNA336152 11843011 0.9035 2019/12/31 SRX1994713 PAZ-016 Rosette leaves Col-0 wild-type, H2A.Z-tagged line 5D Drought stress conditions (withholding water Hor 8 days) PRJNA336152 12041455 0.8763 2019/12/31 SRX2006007 AnAF_Mid1 stem Col-0 -- -- PRJNA337962 12873998 0.9464 2017/9/1 SRX2006015 AnAF_Top1 stem Col-0 -- -- PRJNA337962 12381237 0.9338 2017/9/1 SRX2006017 Col0_Mid1 stem Col-0 -- -- PRJNA337962 9687739 0.9116 2017/9/1 SRX2006019 Col0_Top1 stem Col-0 -- -- PRJNA337962 12863142 0.9404 2017/9/1 SRX2006011 GCE13_Mid1 stem Col-0 -- -- PRJNA337962 21468937 0.9348 2017/9/1 SRX2006013 GCE13_Top1 stem Col-0 -- -- PRJNA337962 12205986 0.9411 2017/9/1 SRX2006021 GCE7_Mid1 stem Col-0 -- -- PRJNA337962 11910280 0.9244 2017/9/1 SRX2006009 GCE7_Top1 stem Col-0 -- -- PRJNA337962 20501089 0.9305 2017/9/1 GSM2274605 AtWT_WERGFP1 root hair Col-0 wild type WER -- PRJNA338767 12355142 0.8924 2017/5/11 GSM2280289 Non-stress rep1 leaves Col-0 wild type Mock PRJNA339001 22042775 0.9488 2018/5/31 GSM2280292 Overexpressor HSFA1b-RFP Non-stress rep1 leaves Col-0 wild type Mock PRJNA339001 21428335 0.9439 2018/5/31 GSM2280286 Heat stress rep1 leaves Col-0 wild type heat PRJNA339001 26820309 0.9485 2018/5/31 GSM2280295 Overexpressor HSFA1b-RFP Heat stress rep1 leaves Col-0 wild type heat PRJNA339001 14697740 0.9366 2018/5/31 SRX2026153 gi_201_ED_Repl1 rosette leaf Col-0 At1g22770 -- PRJNA339032 40242073 0.8697 2017/8/30 SRX2026156 gi_201_EN_Repl1 rosette leaf Col-0 At1g22770 -- PRJNA339032 40152476 0.8675 2017/8/30 SRX2026166 prr7_3_prr9_1_ED_Repl1 rosette leaf Col-0 At5g02810_At2g46790 -- PRJNA339032 38859768 0.8695 2017/8/30 SRX2026159 toc1_101_ED_Repl1 rosette leaf Col-0 At5g61380 -- PRJNA339032 42378933 0.8754 2017/8/30 SRX2026163 toc1_101_EN_Repl1 rosette leaf Col-0 At5g61380 -- PRJNA339032 36791197 0.8391 2017/8/30 SRX2026149 Col_0_ED_Repl1 rosette leaf Col-0 wild type -- PRJNA339032 36943202 0.8337 2017/8/30 SRX2026172 Col_0_EN_Repl1 rosette leaf Col-0 wild type -- PRJNA339032 36259630 0.8713 2017/8/30 GSM2283657 Col-0 rep1 leaves Col-0 Col-0 -- PRJNA339285 23682191 0.9442 2017/8/3 GSM2286739 mut_D_1 seedlings Col-0 sfps-2 (SFPS -/-) Mock PRJNA339647 66296788 0.8575 2017/8/11 GSM2286742 mut_Rc_1 seedlings Col-0 sfps-2 (SFPS -/-) Red light PRJNA339647 70440268 0.8744 2017/8/11 GSM2286733 Col_D_1 seedlings Col-0 wild type Mock PRJNA339647 75127778 0.9195 2017/8/11 GSM2286736 Col_Rc_1 seedlings Col-0 wild type Red light PRJNA339647 60992214 0.9224 2017/8/11 SRX2628401 3-1-poly-38-HT-rep3 seedlings Col-0 hot3-1 mutant -- PRJNA339870 8077793 0.9553 2017/12/1 SRX2040823 3-1-poly-CK-rep1 seedlings Col-0 hot3-1 mutant -- PRJNA339870 10472760 0.9362 2017/9/1 SRX2628404 3-1-total-38-HT-rep3 seedlings Col-0 hot3-1 mutant -- PRJNA339870 9191990 0.9429 2017/12/1 SRX2040820 3-1-total-CK-rep1 seedlings Col-0 hot3-1 mutant -- PRJNA339870 10023197 0.9492 2017/9/1 SRX2040826 3-1-total-HT-rep1 seedlings Col-0 hot3-1 mutant -- PRJNA339870 10634258 0.9228 2017/9/1 SRX2040838 WT-poly-CK-rep1 seedlings Col-0 wild type Mock PRJNA339870 8472817 0.9514 2017/9/1 SRX2040816 WT-total-CK-rep1 seedlings Col-0 wild type Mock PRJNA339870 9475709 0.9434 2017/9/1 SRX2628407 WT-poly-38-HT-rep3 seedlings Col-0 wild type heat PRJNA339870 10208855 0.9539 2017/12/1 SRX2040818 WT-poly-HT-rep2 seedlings Col-0 wild type heat PRJNA339870 9837699 0.9244 2017/9/1 SRX2628410 WT-total-38-HT-rep3 seedlings Col-0 wild type heat PRJNA339870 10407625 0.8817 2017/12/1 SRX2040841 WT-total-HT-rep1 seedlings Col-0 wild type heat stress PRJNA339870 9220748 0.919 2017/9/1 GSM2297734 i4g1-1 seed Col-0 i4g1 -- PRJNA340889 12465347 0.7669 2017/5/1 SRX2095257 CS_00_r2 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 23876337 0.8077 2018/1/26 SRX2095258 CS_07_r2 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 22929502 0.7802 2018/1/26 SRX2095262 CS_120_r2 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 25555143 0.7178 2018/1/26 SRX2095259 CS_15_r2 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 22895715 0.8024 2018/1/26 SRX2095263 CS_240_r2 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 22603947 0.7249 2018/1/26 SRX2095292 CS_30_r3 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 50391350 0.7233 2018/1/26 SRX2095261 CS_60_r2 seedlings Col-0 VCS SOV (Col-0 [SOV-L.er]) -- PRJNA341504 33516945 0.7585 2018/1/26 SRX2095218 CO_07_r1 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 24141262 0.7262 2018/1/26 SRX2095222 CO_120_r1 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 32650513 0.7914 2018/1/26 SRX2095219 CO_15_r1 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 27412475 0.7818 2018/1/26 SRX2095255 CO_240_r2 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 31711287 0.7447 2018/1/26 SRX2095220 CO_30_r1 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 27856447 0.7815 2018/1/26 SRX2095256 CO_480_r2 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 25815463 0.781 2018/1/26 SRX2095253 CO_60_r2 seedlings Col-0 sov (aka Col-0) -- PRJNA341504 27840969 0.7676 2018/1/26 GSM2303801 GC_mock_rep1 leaves Col-0 guanylate cyclase-expressing line Mock PRJNA342005 33407985 0.9403 2017/2/9 GSM2303804 GC_AvrB_rep1 leaves Col-0 guanylate cyclase-expressing line PstAvrB PRJNA342005 36758280 0.9413 2017/2/9 GSM2303795 WT_mock_rep1 leaves Col-0 wild type Mock PRJNA342005 40398770 0.9447 2017/2/9 GSM2303798 WT_AvrB_rep1 leaves Col-0 wild type PstAvrB PRJNA342005 36852678 0.9464 2017/2/9 SRX2839574 MSH1 +/+ WT segregant, Rep 2 leaves Col-0 MSH1 +/+ -- PRJNA342475 43487815 0.839 2017/5/21 SRX2170066 Asn20mM_1 root Col-0 -- Asn PRJNA343179 29062620 0.8393 2017/4/30 GSM2327838 glyk1_HC_01 leaves Col-0 glyk1-1, T-DNA insertion line -- PRJNA344394 114586594 0.7235 2016/10/16 GSM2327849 glyk1_LC_01 leaves Col-0 glyk1-1, T-DNA insertion line -- PRJNA344394 90147193 0.7745 2016/10/16 GSM2327840 pglp1_HC_01 leaves Col-0 pglp1-1, T-DNA insertion line -- PRJNA344394 11210286 0.7084 2016/10/16 GSM2327836 shm1_HC_01 leaves Col-0 shm1-2, T-DNA insertion line -- PRJNA344394 39062150 0.79 2016/10/16 GSM2327847 shm1_LC_01 leaves Col-0 shm1-2, T-DNA insertion line -- PRJNA344394 204869280 0.8664 2016/10/16 GSM2332899 camta1/2/3/sid2 ZT12 rep1 aerial seedling Col-0 camta1/2/3/sid2 mutant -- PRJNA344964 25356995 0.9291 2017/1/3 GSM2332896 WT ZT12 rep1 aerial seedling Col-0 wild type -- PRJNA344964 26329289 0.9271 2017/1/3 SRX2234154 PolWt2h1 seedlings Col-0 -- -- PRJNA345276 25544331 0.7781 2017/10/1 SRX2234156 Polhsp1012h1 seedlings Col-0 -- -- PRJNA345276 22868189 0.7668 2017/10/1 SRX2234130 Polhsp101Control1 seedlings Col-0 -- -- PRJNA345276 23693815 0.7636 2017/10/1 SRX2234139 Polhsp101HS1 seedlings Col-0 -- -- PRJNA345276 25969660 0.7913 2017/10/1 SRX2234112 Totalhsp1012h1 seedlings Col-0 -- -- PRJNA345276 21323834 0.7325 2017/10/1 SRX2234152 Totalhsp101Control1 seedlings Col-0 -- -- PRJNA345276 21301903 0.77 2017/10/1 SRX2234161 Totalhsp101HS1 seedlings Col-0 -- -- PRJNA345276 22128393 0.7433 2017/10/1 SRX2234120 PolWtControl1 seedlings Col-0 -- Mock PRJNA345276 21596094 0.771 2017/10/1 SRX2234106 TotalWtControl1 seedlings Col-0 -- Mock PRJNA345276 20938928 0.7902 2017/10/1 SRX2234163 TotalWt2h1 seedlings Col-0 -- heat recovery 2h PRJNA345276 22551697 0.7337 2017/10/1 SRX2234132 PolWtHS1 seedlings Col-0 -- heat shock 37 PRJNA345276 25618622 0.7607 2017/10/1 SRX2234159 TotalWtHS1 seedlings Col-0 -- heat shock 37 PRJNA345276 22454777 0.7731 2017/10/1 GSM2339784 IMA1 OE rosettes - Fe deficient-1 rosette leaf Col-0 35spro He deHicient PRJNA347353 16374209 0.7063 2016/10/9 GSM2339780 EYFP OE rosettes control-1 rosette leaf Col-0 35spro Mock PRJNA347353 18058578 0.7643 2016/10/9 GSM2339952 WT roots Fe deficient-1 root Col-0 wild type He deHicient PRJNA347360 8111485 0.7561 2016/10/9 GSM2339949 WT roots control-1 root Col-0 wild type Mock PRJNA347360 17485920 0.7639 2016/10/9 GSM2339946 WT rosettes Fe deficient-1 rosette leaf Col-0 wild type He deHicient PRJNA347360 11638253 0.8795 2016/10/9 GSM2339943 WT rosettes control-1 rosette leaf Col-0 wild type Mock PRJNA347360 11014161 0.8762 2016/10/9 SRX2248188 WT_Pp_R1 root Col-0 -- Mock PRJNA348660 12388121 0.7636 2017/10/17 SRX2248185 WT_Pm_R1 root Col-0 -- Pi starvation PRJNA348660 18275051 0.719 2017/10/17 SRX2248562 x01_Col_04_AvrRpm1_01h_rep01 leaves Col-0 Col-0 AvrRpm1_01h PRJNA348676 19180805 0.9099 2017/12/15 SRX2248565 x01_Col_04_AvrRpm1_03h_rep01 leaves Col-0 Col-0 AvrRpm1_03h PRJNA348676 16094725 0.9228 2017/12/15 SRX2248568 x01_Col_04_AvrRpm1_04h_rep01 leaves Col-0 Col-0 AvrRpm1_04h PRJNA348676 19073220 0.9142 2017/12/15 SRX2248571 x01_Col_04_AvrRpm1_06h_rep01 leaves Col-0 Col-0 AvrRpm1_06h PRJNA348676 19860293 0.9178 2017/12/15 SRX2248574 x01_Col_04_AvrRpm1_09h_rep01 leaves Col-0 Col-0 AvrRpm1_09h PRJNA348676 16291471 0.9283 2017/12/15 SRX2248577 x01_Col_04_AvrRpm1_12h_rep01 leaves Col-0 Col-0 AvrRpm1_12h PRJNA348676 26996067 0.9042 2017/12/15 SRX2248580 x01_Col_04_AvrRpm1_16h_rep01 leaves Col-0 Col-0 AvrRpm1_16h PRJNA348676 20049222 0.9223 2017/12/15 SRX2248583 x01_Col_04_AvrRpm1_24h_rep01 leaves Col-0 Col-0 AvrRpm1_24h PRJNA348676 22158922 0.9221 2017/12/15 SRX2267755 x01_Col_01_mock_02h_rep02 leaves Col-0 Col-0 AvrRpt2_02h PRJNA348676 16592528 0.8691 2017/12/15 SRX2248285 x01_Col_03_AvrRpt2_03h_rep01 leaves Col-0 Col-0 AvrRpt2_03h PRJNA348676 19488076 0.8597 2017/12/15 SRX2248305 x01_Col_03_AvrRpt2_06h_rep01 leaves Col-0 Col-0 AvrRpt2_06h PRJNA348676 17512193 0.9161 2017/12/15 SRX2248350 x01_Col_03_AvrRpt2_12h_rep01 leaves Col-0 Col-0 AvrRpt2_12h PRJNA348676 21975438 0.8594 2017/12/15 SRX2248368 x01_Col_03_AvrRpt2_16h_rep01 leaves Col-0 Col-0 AvrRpt2_16h PRJNA348676 23604643 0.9288 2017/12/15 SRX2267763 x01_Col_03_AvrRpt2_20h_rep01 leaves Col-0 Col-0 AvrRpt2_20h PRJNA348676 20100850 0.9182 2017/12/15 SRX2248275 x01_Col_02_EV_01h_rep01 leaves Col-0 Col-0 EV_01h PRJNA348676 16061519 0.8822 2017/12/15 SRX2267753 x01_Col_02_EV_02h_rep01 leaves Col-0 Col-0 EV_02h PRJNA348676 20557961 0.8606 2017/12/15 SRX2248284 x01_Col_02_EV_03h_rep01 leaves Col-0 Col-0 EV_03h PRJNA348676 31247647 0.8602 2017/12/15 SRX2248293 x01_Col_02_EV_04h_rep01 leaves Col-0 Col-0 EV_04h PRJNA348676 27954511 0.8575 2017/12/15 SRX2248303 x01_Col_02_EV_06h_rep01 leaves Col-0 Col-0 EV_06h PRJNA348676 13726074 0.8454 2017/12/15 SRX2248322 x01_Col_02_EV_09h_rep01 leaves Col-0 Col-0 EV_09h PRJNA348676 18423556 0.9185 2017/12/15 SRX2248348 x01_Col_02_EV_12h_rep01 leaves Col-0 Col-0 EV_12h PRJNA348676 19523590 0.8645 2017/12/15 SRX2248366 x01_Col_02_EV_16h_rep01 leaves Col-0 Col-0 EV_16h PRJNA348676 18484358 0.9029 2017/12/15 SRX2267765 x01_Col_02_EV_20h_rep02 leaves Col-0 Col-0 EV_20h PRJNA348676 19056200 0.8817 2017/12/15 SRX2248385 x01_Col_02_EV_24h_rep01 leaves Col-0 Col-0 EV_24h PRJNA348676 18695988 0.8755 2017/12/15 SRX2248274 x01_Col_01_mock_01h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 20994397 0.8607 2017/12/15 SRX2248283 x01_Col_01_mock_03h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 33266892 0.8551 2017/12/15 SRX2248292 x01_Col_01_mock_04h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 30382464 0.8602 2017/12/15 SRX2248301 x01_Col_01_mock_06h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 21786682 0.883 2017/12/15 SRX2248319 x01_Col_01_mock_09h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 19500745 0.9099 2017/12/15 SRX2248346 x01_Col_01_mock_12h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 19757762 0.8456 2017/12/15 SRX2248364 x01_Col_01_mock_16h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 17453055 0.9183 2017/12/15 SRX2267764 x01_Col_01_mock_20h_rep02 leaves Col-0 Col-0 Mock PRJNA348676 23988108 0.9112 2017/12/15 SRX2248382 x01_Col_01_mock_24h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 18947498 0.8689 2017/12/15 SRX2267754 x01_Col_03_AvrRpt2_02h_rep01 leaves Col-0 Col-0 Mock PRJNA348676 22228269 0.8667 2017/12/15 SRX2248586 x16_deps_04_AvrRpm1_04h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpm1_04h PRJNA348676 18039738 0.9275 2017/12/15 SRX2248589 x16_deps_04_AvrRpm1_06h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpm1_06h PRJNA348676 18003853 0.9034 2017/12/15 SRX2248592 x16_deps_04_AvrRpm1_09h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpm1_09h PRJNA348676 16360151 0.9103 2017/12/15 SRX2248601 x16_deps_04_AvrRpm1_24h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpm1_24h PRJNA348676 17060538 0.9269 2017/12/15 SRX2248450 x16_deps_03_AvrRpt2_04h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpt2_04h PRJNA348676 25298461 0.8673 2017/12/15 SRX2248468 x16_deps_03_AvrRpt2_06h_rep02 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpt2_06h PRJNA348676 18230718 0.8825 2017/12/15 SRX2248327 x16_deps_03_AvrRpt2_09h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpt2_09h PRJNA348676 18481291 0.9139 2017/12/15 SRX2248474 x16_deps_03_AvrRpt2_12h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpt2_12h PRJNA348676 21177196 0.8955 2017/12/15 SRX2248390 x16_deps_03_AvrRpt2_24h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 AvrRpt2_24h PRJNA348676 18824224 0.902 2017/12/15 SRX2248448 x16_deps_02_EV_04h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 EV_04h PRJNA348676 17761618 0.8816 2017/12/15 SRX2248324 x16_deps_02_EV_09h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 EV_09h PRJNA348676 18638804 0.9165 2017/12/15 SRX2248473 x16_deps_02_EV_12h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 EV_12h PRJNA348676 15981333 0.8934 2017/12/15 SRX2248482 x16_deps_02_EV_16h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 EV_16h PRJNA348676 20490650 0.8824 2017/12/15 SRX2248387 x16_deps_02_EV_24h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 EV_24h PRJNA348676 17859830 0.8631 2017/12/15 SRX2248446 x16_deps_01_mock_04h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 Mock PRJNA348676 24403964 0.858 2017/12/15 SRX2248463 x16_deps_01_mock_06h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 Mock PRJNA348676 25065697 0.8739 2017/12/15 SRX2248321 x16_deps_01_mock_09h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 Mock PRJNA348676 16350336 0.9076 2017/12/15 SRX2248472 x16_deps_01_mock_12h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 Mock PRJNA348676 23318385 0.8667 2017/12/15 SRX2248481 x16_deps_01_mock_16h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 Mock PRJNA348676 21437740 0.8778 2017/12/15 SRX2248384 x16_deps_01_mock_24h_rep01 leaves Col-0 dde2-2 ein2-1 pad4-1 sid2-2 Mock PRJNA348676 17166117 0.8675 2017/12/15 SRX2248546 x04_pad4_03_AvrRpt2_04h_rep01 leaves Col-0 pad4-1 AvrRpt2_04h PRJNA348676 19327297 0.9103 2017/12/15 SRX2248492 x04_pad4_03_AvrRpt2_06h_rep01 leaves Col-0 pad4-1 AvrRpt2_06h PRJNA348676 18841676 0.888 2017/12/15 SRX2248429 x04_pad4_03_AvrRpt2_24h_rep01 leaves Col-0 pad4-1 AvrRpt2_24h PRJNA348676 17807593 0.9089 2017/12/15 SRX2248545 x04_pad4_02_EV_04h_rep01 leaves Col-0 pad4-1 EV_04h PRJNA348676 19108380 0.9247 2017/12/15 SRX2248491 x04_pad4_02_EV_06h_rep01 leaves Col-0 pad4-1 EV_06h PRJNA348676 24165669 0.9031 2017/12/15 SRX2248509 x04_pad4_02_EV_12h_rep01 leaves Col-0 pad4-1 EV_12h PRJNA348676 20079186 0.8787 2017/12/15 SRX2248410 x04_pad4_02_EV_09h_rep01 leaves Col-0 pad4-1 Ev_09h PRJNA348676 17344210 0.9174 2017/12/15 SRX2248544 x04_pad4_01_mock_04h_rep01 leaves Col-0 pad4-1 Mock PRJNA348676 16970547 0.9301 2017/12/15 SRX2248490 x04_pad4_01_mock_06h_rep01 leaves Col-0 pad4-1 Mock PRJNA348676 23287515 0.9012 2017/12/15 SRX2248409 x04_pad4_01_mock_09h_rep01 leaves Col-0 pad4-1 Mock PRJNA348676 18543888 0.9088 2017/12/15 SRX2248508 x04_pad4_01_mock_12h_rep01 leaves Col-0 pad4-1 Mock PRJNA348676 21707923 0.8763 2017/12/15 SRX2248526 x04_pad4_01_mock_16h_rep01 leaves Col-0 pad4-1 Mock PRJNA348676 18356749 0.9035 2017/12/15 SRX2248549 x11_ps_03_AvrRpt2_04h_rep01 leaves Col-0 pad4-1 sid2-2 AvrRpt2_04h PRJNA348676 19707086 0.9207 2017/12/15 SRX2248495 x11_ps_03_AvrRpt2_06h_rep01 leaves Col-0 pad4-1 sid2-2 AvrRpt2_06h PRJNA348676 18413325 0.8952 2017/12/15 SRX2248414 x11_ps_03_AvrRpt2_09h_rep01 leaves Col-0 pad4-1 sid2-2 AvrRpt2_09h PRJNA348676 17745883 0.9154 2017/12/15 SRX2248548 x11_ps_02_EV_04h_rep01 leaves Col-0 pad4-1 sid2-2 EV_04h PRJNA348676 16297981 0.9246 2017/12/15 SRX2248494 x11_ps_02_EV_06h_rep01 leaves Col-0 pad4-1 sid2-2 EV_06h PRJNA348676 21789544 0.8852 2017/12/15 SRX2248512 x11_ps_02_EV_12h_rep01 leaves Col-0 pad4-1 sid2-2 EV_12h PRJNA348676 17554393 0.8663 2017/12/15 SRX2248530 x11_ps_02_EV_16h_rep01 leaves Col-0 pad4-1 sid2-2 EV_16h PRJNA348676 16382229 0.885 2017/12/15 SRX2248413 x11_ps_02_EV_09h_rep01 leaves Col-0 pad4-1 sid2-2 Ev_09h PRJNA348676 23111816 0.906 2017/12/15 SRX2248431 x11_ps_02_EV_24h_rep01 leaves Col-0 pad4-1 sid2-2 Ev_24h PRJNA348676 26834136 0.8507 2017/12/15 SRX2248547 x11_ps_01_mock_04h_rep01 leaves Col-0 pad4-1 sid2-2 Mock PRJNA348676 16595580 0.9323 2017/12/15 SRX2248493 x11_ps_01_mock_06h_rep01 leaves Col-0 pad4-1 sid2-2 Mock PRJNA348676 20771618 0.8895 2017/12/15 SRX2248412 x11_ps_01_mock_09h_rep01 leaves Col-0 pad4-1 sid2-2 Mock PRJNA348676 16969015 0.9194 2017/12/15 SRX2248511 x11_ps_01_mock_12h_rep01 leaves Col-0 pad4-1 sid2-2 Mock PRJNA348676 21678842 0.8857 2017/12/15 SRX2248613 x17_rr_01_mock_04h_rep01 leaves Col-0 rpm1-3 rpad4-1 sid2-22 101C Mock PRJNA348676 19705697 0.9084 2017/12/15 SRX2248606 x17_rr_04_AvrRpm1_01h_rep01 leaves Col-0 rpm1-3 rpad4-1 sid2-22 101C Pto AvrRpm1 PRJNA348676 17478655 0.8865 2017/12/15 SRX2248615 x17_rr_04_AvrRpm1_04h_rep01 leaves Col-0 rpm1-3 rpad4-1 sid2-22 101C Pto AvrRpm1 PRJNA348676 18922802 0.9016 2017/12/15 SRX2248614 x17_rr_03_AvrRpt2_04h_rep01 leaves Col-0 rpm1-3 rpad4-1 sid2-22 101C Pto AvrRpt2 PRJNA348676 18234701 0.9107 2017/12/15 SRX2248449 x05_sid2_03_AvrRpt2_04h_rep01 leaves Col-0 sid2-2 AvrRpt2_04h PRJNA348676 25431554 0.8697 2017/12/15 SRX2248306 x05_sid2_03_AvrRpt2_06h_rep01 leaves Col-0 sid2-2 AvrRpt2_06h PRJNA348676 21144070 0.9158 2017/12/15 SRX2248326 x05_sid2_03_AvrRpt2_09h_rep01 leaves Col-0 sid2-2 AvrRpt2_09h PRJNA348676 20731550 0.9174 2017/12/15 SRX2248389 x05_sid2_03_AvrRpt2_24h_rep01 leaves Col-0 sid2-2 AvrRpt2_24h PRJNA348676 15977936 0.8485 2017/12/15 SRX2248447 x05_sid2_02_EV_04h_rep01 leaves Col-0 sid2-2 EV_04h PRJNA348676 22761529 0.8672 2017/12/15 SRX2248304 x05_sid2_02_EV_06h_rep01 leaves Col-0 sid2-2 EV_06h PRJNA348676 20734235 0.9016 2017/12/15 SRX2248323 x05_sid2_02_EV_09h_rep01 leaves Col-0 sid2-2 EV_09h PRJNA348676 18374228 0.9158 2017/12/15 SRX2248349 x05_sid2_02_EV_12h_rep01 leaves Col-0 sid2-2 EV_12h PRJNA348676 21689206 0.8555 2017/12/15 SRX2248386 x05_sid2_02_EV_24h_rep01 leaves Col-0 sid2-2 EV_24h PRJNA348676 17028098 0.8762 2017/12/15 SRX2248445 x05_sid2_01_mock_04h_rep01 leaves Col-0 sid2-2 Mock PRJNA348676 20702015 0.8609 2017/12/15 SRX2248302 x05_sid2_01_mock_06h_rep01 leaves Col-0 sid2-2 Mock PRJNA348676 19227210 0.8873 2017/12/15 SRX2248320 x05_sid2_01_mock_09h_rep01 leaves Col-0 sid2-2 Mock PRJNA348676 19163285 0.9125 2017/12/15 SRX2248347 x05_sid2_01_mock_12h_rep01 leaves Col-0 sid2-2 Mock PRJNA348676 20831022 0.8616 2017/12/15 SRX2248365 x05_sid2_01_mock_16h_rep01 leaves Col-0 sid2-2 Mock PRJNA348676 13049576 0.9211 2017/12/15 SRX2248383 x05_sid2_01_mock_24h_rep01 leaves Col-0 sid2-2 Mock PRJNA348676 18428731 0.8785 2017/12/15 SRX2327074 RNA_Seq of Arabidopsis thaliana:hda15_3 seedlings Col-0 hda15 mutant -- PRJNA349095 63532824 0.8745 2016/11/9 SRX2327075 RNA_Seq of Arabidopsis thaliana:Col2 seedlings Col-0 wild type -- PRJNA349095 67930294 0.8762 2016/11/9 SRX2310801 Ath_Mg5_WR_R1_L3 root Col-0 -- Mg deHicient PRJNA350903 6594651 0.8542 2017/11/30 SRX2310797 Ath_Mg1500_WR_R2_L3 root Col-0 -- Mock PRJNA350903 7224236 0.7093 2017/11/30 GSM2367133 WT_7DAG_1 seedlings Col-0 Wild Type -- PRJNA351872 57837872 0.9155 2017/3/23 GSM2367135 abc_7DAG_1 seedlings Col-0 atbmi1abc triple mutant -- PRJNA351872 54627448 0.9225 2017/3/23 GSM2371471 sac3b-7_mRNA-Seq_rep1 seedlings Col-0 sac3b-7 (SALK 111245) -- PRJNA352201 16581285 0.8247 2016/11/4 GSM2371469 Col-0_WT_mRNA-Seq_rep1 seedlings Col-0 wild type -- PRJNA352201 16518523 0.8209 2016/11/4 SRX2325948 tga256_C2 seedlings Col-0 tga2/5/6 -- PRJNA352413 14317816 0.7834 2018/3/31 SRX2325943 WT_C1 seedlings Col-0 wild type Mock PRJNA352413 15734931 0.8119 2018/3/31 SRX2325944 WT_UV2 seedlings Col-0 wild type UV PRJNA352413 13553871 0.7446 2018/3/31 GSM1930834 WT_Sil_n1 siliques Col-0 wild type -- PRJNA352720 34540755 0.9182 2016/11/16 GSM2388460 hdac rep1 seedlings Col-0 hda9-1 -- PRJNA353122 52124331 0.8619 2017/1/26 GSM2388463 pwr rep1 seedlings Col-0 pwr-2 -- PRJNA353122 51480957 0.8488 2017/1/26 GSM2388457 Col rep1 seedlings Col-0 wild type -- PRJNA353122 58249639 0.8627 2017/1/26 GSM2391505 nf-ycQ rep1 seedlings Col-0 T-DNA knockout mutant of nf-ycQ -- PRJNA353593 15873138 0.8697 2016/11/17 GSM2391502 Col rep1 seedlings Col-0 wild type -- PRJNA353593 16083528 0.8882 2016/11/17 GSM2392677 Arabidopsis leaf treated with Chlorella at 0h rep1 leaf Col-0 -- Chlorella PRJNA353660 28357684 0.8807 2019/12/16 GSM2392679 Arabidopsis leaf treated with Chlorella and DC3000 at 12h rep1 leaf Col-0 -- Chlorella, DC3000 PRJNA353660 23973719 0.881 2019/12/16 GSM2392681 Arabidopsis leaf treated with water at 0h rep1 leaf Col-0 -- Water PRJNA353660 28983320 0.9008 2019/12/16 GSM2392683 Arabidopsis leaf treated with water and DC3000 at 12h rep1 leaf Col-0 -- Water, DC3000 PRJNA353660 35811731 0.878 2019/12/16 SRX2363381 ST biological replicate 1 seedlings Col-0 -- -- PRJNA354104 21572123 0.9435 2017/5/3 SRX2363386 cwc16 biological replicate 1 seedlings Col-0 -- -- PRJNA354104 22208714 0.9438 2017/5/3 GSM2395426 abi5-1 seed Col-0 ABI5-/- -- PRJNA354330 15072116 0.8195 2017/7/12 GSM2395423 Col-1 seed Col-0 wild type -- PRJNA354330 14473238 0.8826 2017/7/12 GSM2397343 35S::HopBB1_rep1 seedlings Col-0 35S::HopBB1-myc -- PRJNA354368 8882549 0.9113 2017/1/12 GSM2397346 Col-0_rep1 seedlings Col-0 Wild type -- PRJNA354368 8419349 0.9115 2017/1/12 GSM2397325 MeJA_1h_rep1 seedlings Col-0 -- MeJA 1h PRJNA354369 18480998 0.7994 2017/1/12 GSM2397313 Col-0_DC3000cor-_rep2 seedlings Col-0 Col-0 DC3000 cor- PRJNA354370 7979193 0.9186 2017/1/12 GSM2397301 Col-0_mock_rep1 seedlings Col-0 Col-0 MgCl2 PRJNA354370 5636869 0.9178 2017/1/12 GSM2397315 UBQ10::YFP-TCP14-3_DC3000cor-_rep2 seedlings Col-0 UBQ10 DC3000 cor- PRJNA354370 5961653 0.9159 2017/1/12 GSM2397303 UBQ10::YFP-TCP14-3_mock_rep1 seedlings Col-0 UBQ10 MgCl2 PRJNA354370 5388443 0.9138 2017/1/12 GSM2397308 coi1-16_DC3000cor-_rep1 seedlings Col-0 coi1-16 DC3000 cor- PRJNA354370 5684785 0.92 2017/1/12 GSM2397304 coi1-16_mock_rep1 seedlings Col-0 coi1-16 MgCl2 PRJNA354370 5177431 0.9162 2017/1/12 GSM2397314 tcp14-6_DC3000cor-_rep2 seedlings Col-0 tcp14-6 DC3000 cor- PRJNA354370 9999208 0.9155 2017/1/12 SRX2367913 seven-day plants(root) grown in fresh nutrient solution with 20 μM AlCl3 for 24 h, rep1 root Col-0 cbl1 mutant with 20 μM AlCl3 Hor 24 h PRJNA354456 11124263 0.8165 2016/12/21 SRX2367814 seven-day plants(root) grown in fresh nutrient solution without 20 μM AlCl3 for 24 h, rep1 root Col-0 cbl1 mutant without 20 μM AlCl3 Hor 24 h PRJNA354456 7477548 0.836 2016/12/21 SRX2367987 seven-day plants(root) grown in fresh nutrient solution with 20 μM AlCl3 for 24 h, rep1 root Col-0 wild type AlCl3 PRJNA354456 6654117 0.8744 2016/12/21 SRX2367981 seven-day plants(root) grown in fresh nutrient solution without 20 μM AlCl3 for 24 h, rep1 root Col-0 wild type Mock PRJNA354456 7098725 0.8557 2016/12/21 SRX2367916 seven-day plants(shoot) grown in fresh nutrient solution with 20 μM AlCl3 for 24 h, rep1 shoot Col-0 cbl1 mutant with 20 μM AlCl3 Hor 24 h PRJNA354456 7633269 0.8464 2016/12/21 SRX2367910 seven-day plants(shoot) grown in fresh nutrient solution without 20 μM AlCl3 for 24 h, rep1 shoot Col-0 cbl1 mutant without 20 μM AlCl3 Hor 24 h PRJNA354456 6389625 0.8478 2016/12/21 SRX2367991 seven-day plants(shoot) grown in fresh nutrient solution with 20 μM AlCl3 for 24 h, rep1 shoot Col-0 wild type AlCl3 PRJNA354456 5394363 0.8792 2016/12/21 SRX2367984 seven-day plants(shoot) grown in fresh nutrient solution without 20 μM AlCl3 for 24 h, rep1 shoot Col-0 wild type Mock PRJNA354456 6834193 0.8647 2016/12/21 SRX2369540 OE_1 leaves Col-0 OE -- PRJNA354567 25058805 0.8498 2016/11/28 SRX2369539 WT_3 leaves Col-0 wild type -- PRJNA354567 24974185 0.8817 2016/11/28 SRX2413427 Sample-OE1 stem Col-0 -- -- PRJNA356835 9612411 0.8681 2017/12/1 SRX2413430 Sample-W1 stem Col-0 -- -- PRJNA356835 15850353 0.8634 2017/12/1 GSM2429865 K36M-mRNA-Rep-1 leaves Col-0 K36M -- PRJNA357598 12654326 0.8853 2017/6/16 GSM2433475 11 leaves Col-0 -- 2h induced PRJNA358157 12094670 0.9497 2018/2/14 GSM2433481 31 leaves Col-0 -- 4h induced PRJNA358157 12561824 0.9488 2018/2/14 GSM2433478 17 leaves Col-0 -- Mock PRJNA358157 9903492 0.9457 2018/2/14 SRX2438615 Rpm1_wildtype_1 leaves Col-0 Col-0 Mock PRJNA358395 27745724 0.8777 2017/12/15 SRX2438623 Flg22_camta3D_1 leaves Col-0 camta3-D (sr1-4d) 100 nM oH Hlg22 PRJNA358395 19108097 0.8834 2017/12/15 GSM2435563 Rps4_camta3D_1 leaves Col-0 camta3-D (sr1-4d) AvrRps4 PRJNA358395 21785343 0.8924 2017/12/15 GSM2981933 ibm1 rep1 leaves Col-0 ibm1 -- PRJNA359478 23503826 0.8699 2018/3/3 SRX2499466 sh(0.2)-phyA-211 rep1 seedlings Col-0 phyA mutant -- PRJNA360878 23890125 0.8397 2018/1/12 SRX2499459 sh(0.8)-phyA-211 rep1 seedlings Col-0 phyA mutant -- PRJNA360878 23702348 0.8403 2018/1/12 SRX2499461 sh(0.2)-Col-0 rep1 seedlings Col-0 wild type low R/HR (0.2) PRJNA360878 23843503 0.8262 2018/1/12 SRX2499457 sh(0.8)-Col-0 rep1 seedlings Col-0 wild type low R/HR (0.8) PRJNA360878 23911732 0.8587 2018/1/12 GSM2453041 WT_starvation1 leaves Col-0 wild type Hixed carbon starvation 5 day PRJNA360931 32401501 0.9138 2017/4/13 GSM2453035 WT_control1 leaves Col-0 wild type Mock PRJNA360931 32156324 0.8992 2017/4/13 GSM2453038 WT_dehydration1 leaves Col-0 wild type dehydration 4h PRJNA360931 32128918 0.8979 2017/4/13 GSM2454706 OX_0hr_rep1 seedlings Col-0 ELENA1 over-expressing plants Without elH18 treatment PRJNA361118 56624335 0.9049 2017/5/19 GSM2454715 OX_12hr_rep1 seedlings Col-0 ELENA1 over-expressing plants elH18-treated 12h PRJNA361118 54603032 0.9066 2017/5/19 GSM2454709 OX_1hr_rep1 seedlings Col-0 ELENA1 over-expressing plants elH18-treated 1h PRJNA361118 60584740 0.8916 2017/5/19 GSM2454712 OX_6hr_rep1 seedlings Col-0 ELENA1 over-expressing plants elH18-treated 6h PRJNA361118 55068096 0.9077 2017/5/19 GSM2454694 WT_0hr_rep1 seedlings Col-0 Wild type Mock PRJNA361118 53949349 0.9077 2017/5/19 GSM2454703 WT_12hr_rep1 seedlings Col-0 Wild type elH18-treated 12h PRJNA361118 48133521 0.9108 2017/5/19 GSM2454697 WT_1hr_rep1 seedlings Col-0 Wild type elH18-treated 1h PRJNA361118 57649339 0.9039 2017/5/19 GSM2454700 WT_6hr_rep1 seedlings Col-0 Wild type elH18-treated 6h PRJNA361118 58940658 0.8658 2017/5/19 GSM2455322 TruSeq Col-0 Rep1 inflorescence Col-0 wild type -- PRJNA361224 67039683 0.702 2017/7/18 GSM2466000 ZAT18 OE control rep1 leaves Col-0 ZAT18 overexpression lines Mock PRJNA362994 7807169 0.885 2017/6/13 GSM2466004 ZAT18 OE drought rep1 leaves Col-0 ZAT18 overexpression lines drought PRJNA362994 7936403 0.8806 2017/6/13 GSM2465998 WT control rep1 leaves Col-0 wild type Mock PRJNA362994 7943088 0.8793 2017/6/13 GSM2466002 WT drought rep1 leaves Col-0 wild type drought PRJNA362994 7976843 0.8887 2017/6/13 GSM2467134 bzip28bzip60 EF0h rep1 flower bud Col-0 bzip28 bzip60 control PRJNA363056 18914748 0.8433 2017/3/15 GSM2467140 bzip28bzip60 LF0h rep1 flower bud Col-0 bzip28 bzip60 control PRJNA363056 18501943 0.7594 2017/3/15 GSM2467143 bzip28bzip60 LF3h rep1 flower bud Col-0 bzip28 bzip60 treated at 37C Hor 3h PRJNA363056 18089201 0.7807 2017/3/15 GSM2467116 WT EF0h rep1 flower bud Col-0 wild type Mock PRJNA363056 14365894 0.947 2017/3/15 GSM2467122 WT LF0h rep1 flower bud Col-0 wild type Mock PRJNA363056 8806046 0.9338 2017/3/15 GSM2467125 WT LF3h rep1 flower bud Col-0 wild type heat 3h PRJNA363056 13826870 0.9351 2017/3/15 GSM2467110 WT RL0h rep1 rosette leaf Col-0 wild type Mock PRJNA363056 13848581 0.9472 2017/3/15 GSM2467113 WT RL3h rep1 rosette leaf Col-0 wild type heat 3h PRJNA363056 12281054 0.9456 2017/3/15 SRX2513462 trm4b-4 1 whole plant Col-0 tm4b-4 -- PRJNA363063 24159617 0.8974 2017/10/11 SRX2513460 Wild-type 1 whole plant Col-0 wild type -- PRJNA363063 29137232 0.8941 2017/10/11 SRX2520759 py_root_30nM_thiamin_r3 root Col-0 py mutant 30 nM thiamin PRJNA368967 14826915 0.8109 2017/1/31 SRX2520761 tz_root_30nM_thiamin_r3 root Col-0 tz mutant 30 nM thiamin PRJNA368967 19428119 0.8113 2017/1/31 SRX2520763 Col_root_30nM_thiamin_r3 root Col-0 wild type 30 nM thiamin PRJNA368967 16605888 0.81 2017/1/31 SRX2520765 Col_root_no_thiamin_r3 root Col-0 wild type Mock PRJNA368967 15224698 0.8114 2017/1/31 SRX2520745 py_rosette_10uM_thiamin_r3 rosette leaf Col-0 py mutant 10 microM thiamin PRJNA368967 13575323 0.8919 2017/1/31 SRX2520751 py_rosette_30nM_thiamin_r3 rosette leaf Col-0 py mutant 30 nM thiamin PRJNA368967 13086518 0.8915 2017/1/31 SRX2520747 tz_rosette_10uM_thiamin_r3 rosette leaf Col-0 tz mutant 10 microM thiamin PRJNA368967 16067332 0.8918 2017/1/31 SRX2520753 tz_rosette_30nM_thiamin_r3 rosette leaf Col-0 tz mutant 30 nM thiamin PRJNA368967 11465728 0.8977 2017/1/31 SRX2520749 Col_rosette_10uM_thiamin_3 rosette leaf Col-0 wild type 10 microM thiamin PRJNA368967 15109877 0.8906 2017/1/31 SRX2520755 Col_rosette_30nM_thiamin_r3 rosette leaf Col-0 wild type 30 nM thiamin PRJNA368967 9659261 0.9127 2017/1/31 SRX2520757 Col_rosette_no_thiamin_r3 rosette leaf Col-0 wild type Mock PRJNA368967 9950842 0.9112 2017/1/31 SRX2529390 mock1 inflorescence Col-0 -- Mock PRJNA369327 30891060 0.7967 2017/11/22 GSM2472796 dex2 inflorescence Col-0 dex dex PRJNA369327 30823170 0.799 2017/11/22 SRX2529374 mock1 inflorescence Col-0 -- Mock PRJNA369328 83337626 0.9107 2017/11/22 SRX2529377 dex1 inflorescence Col-0 -- dex PRJNA369328 64596376 0.8835 2017/11/22 SRX2529380 cyc-mock1 inflorescence Col-0 -- Mock PRJNA369329 22331678 0.9212 2017/11/22 SRX2529383 cyc-dex1 inflorescence Col-0 -- dex PRJNA369329 38665896 0.9179 2017/11/22 SRX2530449 Dark4 cultured cell Col-0 -- Dark PRJNA369429 18566047 0.7168 2017/2/5 SRX2530453 Light4 cultured cell Col-0 -- Mock PRJNA369429 11130575 0.7496 2017/2/5 SRX2542551 Col0-1 anther Col-0 wild type -- PRJNA371597 11395349 0.9022 2017/9/15 SRX2549220 ABA_48h_3 seedlings Col-0 ABA ABA 48h PRJNA371677 22646997 0.9011 2018/3/31 SRX2549226 ABA_6h_3 seedlings Col-0 ABA ABA 6h PRJNA371677 22920384 0.9277 2018/3/31 SRX2549223 Con_48h_3 seedlings Col-0 Con Mock PRJNA371677 23236586 0.8842 2018/3/31 SRX2549229 Con_6h_3 seedlings Col-0 Con Mock PRJNA371677 22706884 0.9305 2018/3/31 SRX2578618 Col-0 replicate3 seedlings Col-0 -- -- PRJNA374393 15654214 0.9481 2019/1/30 SRX2578615 mac3 replicate3 seedlings Col-0 mac3 -- PRJNA374393 14230001 0.947 2019/1/30 SRX2578612 skip-1 replicate3 seedlings Col-0 skip-1 -- PRJNA374393 15301002 0.9468 2019/1/30 SRX2598378 Col0_RNAseq_rep1 seedlings Col-0 wild type -- PRJNA377231 42564418 0.906 2018/1/24 SRX2598381 xrn3-8_RNAseq_rep1 seedlings Col-0 xrn3-8 -- PRJNA377231 39068724 0.8926 2018/1/24 GSM2516601 med16 ref4-3 rep1 rosette leaf Col-0 med16-2/med16-3 ref4-3/ref4-3 -- PRJNA377549 8413423 0.9448 2018/2/16 GSM2516577 med2 rep1 rosette leaf Col-0 med2-1 -- PRJNA377549 20751779 0.9385 2018/2/16 GSM2516593 med2 ref4-3 rep1 rosette leaf Col-0 med2-1/med2-3 ref4-3/ref4-3 -- PRJNA377549 26086330 0.8964 2018/2/16 GSM2516605 med23 ref4-3 rep1 rosette leaf Col-0 med23-1/med23-2 ref4-3/ref4-3 -- PRJNA377549 17087088 0.9393 2018/2/16 GSM2516589 med23 rep1 rosette leaf Col-0 med23-4 -- PRJNA377549 13490126 0.9374 2018/2/16 GSM2516581 med5ab rep1 rosette leaf Col-0 med5a-1 med5b-1 -- PRJNA377549 18283136 0.9405 2018/2/16 GSM2516597 med5b-3 ref4-3 rep1 rosette leaf Col-0 med5b-3 ref4-3 -- PRJNA377549 14686252 0.9302 2018/2/16 GSM2516573 ref4-3 rep1 rosette leaf Col-0 ref4-3 -- PRJNA377549 12555603 0.9473 2018/2/16 GSM2516585 med16 rep1 rosette leaf Col-0 sfr6-2 -- PRJNA377549 12897047 0.9503 2018/2/16 GSM2516569 WT rep1 rosette leaf Col-0 wild type -- PRJNA377549 16295013 0.9493 2018/2/16 GSM2520860 WT 0h R1 inflorescence Col-0 wild type Mock PRJNA377889 6517195 0.9037 2018/3/26 GSM2520864 WT 12h R1 inflorescence Col-0 wild type switch18to28 12h PRJNA377889 5345429 0.9083 2018/3/26 GSM2520862 WT 3h R1 inflorescence Col-0 wild type switch18to28 3h PRJNA377889 5245208 0.909 2018/3/26 GSM2520866 WT 48h R1 inflorescence Col-0 wild type switch18to28 48h PRJNA377889 5855762 0.908 2018/3/26 GSM2520868 zed1-D 0h R1 inflorescence Col-0 zed1-D switch18to28 0h PRJNA377889 5533973 0.9099 2018/3/26 GSM2520872 zed1-D 12h R1 inflorescence Col-0 zed1-D switch18to28 12h PRJNA377889 6172899 0.9107 2018/3/26 GSM2520870 zed1-D 3h R1 inflorescence Col-0 zed1-D switch18to28 3h PRJNA377889 5825948 0.91 2018/3/26 GSM2537712 ceh 1 rosette leaf Col-0 ceh1 -- PRJNA379315 26806483 0.7017 2017/6/5 GSM2537718 ceh/eds 1 rosette leaf Col-0 ceh1/eds16 -- PRJNA379315 11461956 0.7557 2017/6/5 GSM2537715 eds 1 rosette leaf Col-0 eds16 -- PRJNA379315 12506143 0.7232 2017/6/5 GSM2537709 parent 1 rosette leaf Col-0 wild type -- PRJNA379315 10325026 0.724 2017/6/5 GSM2544986 hda15-1 rep1 seed Col-0 hda15-1 HR(Dark) conditions PRJNA379933 19285055 0.8884 2017/3/23 GSM2544983 Col-0 rep1 seed Col-0 wild type HR(Dark) conditions PRJNA379933 18414366 0.7763 2017/3/23 GSM2546368 SCL28-OX_replicate1 root tip Col-0 SCL28-OX #10 -- PRJNA380206 30660623 0.9366 2017/5/1 GSM2546366 WT_replicate1 root tip Col-0 Wild type -- PRJNA380206 35915622 0.9389 2017/5/1 GSM2564769 DEX_bdl_1 internode Col-0 35S::Myc-GR-bdl DEX PRJNA381799 46393380 0.9188 2017/5/30 GSM2564766 Mock_bdl_1 internode Col-0 35S::Myc-GR-bdl Mock PRJNA381799 38923050 0.9029 2017/5/30 GSM2564789 DEX_MP_1 internode Col-0 PXY:GR-MPΔIII/IV DEX PRJNA381808 30472195 0.8757 2017/5/30 GSM2564786 Mock_MP_1 internode Col-0 PXY:GR-MPΔIII/IV Mock PRJNA381808 31842771 0.8359 2017/5/30 GSM2574869 Col_1_1 leaves Col-0 Col-0 -- PRJNA382583 18409752 0.9027 2017/5/31 GSM2574872 Col_2_1 leaves Col-0 Col-0 -- PRJNA382583 16357885 0.9095 2017/5/31 GSM2585963 CPL4RNAi_rep1 seedlings Col-0 CPL4 knockdown -- PRJNA383872 16139400 0.9085 2018/2/16 GSM2585960 Col_rep1 seedlings Col-0 wild type -- PRJNA383872 18728313 0.8238 2018/2/16 GSM2588917 mesophyll_col0_1 mesophyll Col-0 wild type -- PRJNA384192 35243604 0.7443 2018/2/13 SRX2771267 WT_mRNA_3 leaves Col-0 Wild type -- PRJNA384933 68287361 0.9108 2017/11/1 SRX2771264 smc4_mRNA_3 leaves Col-0 smc4 -- PRJNA384933 76302241 0.8994 2017/11/1 SRX2771284 A_thaliana_leaf_3DAI_with_Fusarium_3 cauline leaf Col-0 Wild type Husarium 3dpi PRJNA384934 24553960 0.9082 2017/5/19 SRX2771296 A_thaliana_mature_pistils_unpollinated_2 pistils Col-0 Wild type Mock PRJNA384934 24810196 0.9079 2017/5/19 SRX2771290 A_thaliana_pistils_x_A_halleri_pollen_8HAP_3 pistils Col-0 Wild type pollinated with A. halleri pollen PRJNA384934 25773873 0.8337 2017/5/19 SRX2771292 A_thaliana_pistils_x_A_lyrata_pollen_8HAP_2 pistils Col-0 Wild type pollinated with A. lyrata pollen PRJNA384934 23859588 0.864 2017/5/19 SRX2771294 A_thaliana_pistils_selfed_8HAP_2 pistils Col-0 Wild type selH pollinated PRJNA384934 24854249 0.8849 2017/5/19 GSM2593279 jazQ_1 whole plant Col-0 jazQ -- PRJNA384979 19249905 0.881 2017/5/3 GSM2593285 jazQmycT_1 whole plant Col-0 jazQ mycT -- PRJNA384979 26938645 0.7044 2017/5/3 GSM2593282 mycT_1 whole plant Col-0 mycT -- PRJNA384979 24265145 0.7728 2017/5/3 GSM2593276 Col-0_1 whole plant Col-0 wild type -- PRJNA384979 27870565 0.8755 2017/5/3 GSM2607987 asi1-2_mRNA-Seq_rep1 seedlings Col-0 aip1-2 -- PRJNA385813 19180145 0.9303 2017/8/17 GSM2607985 aipp1-1_mRNA-Seq_rep1 seedlings Col-0 aipp1-1 -- PRJNA385813 15023335 0.9106 2017/8/17 GSM2607991 edm2-4_mRNA-Seq_rep1 seedlings Col-0 edm2-4 -- PRJNA385813 19293296 0.9242 2017/8/17 GSM2607989 Col-0_mRNA-Seq_rep1 seedlings Col-0 wild type -- PRJNA385813 17776631 0.9262 2017/8/17 GSM2611735 luc7_seedlings_rep1 seedlings Col-0 triple mutant (luc7 a-2, b-1, rl-1) -- PRJNA386184 24819136 0.7078 2017/5/24 GSM2611732 WT_seedlings_rep1 seedlings Col-0 wild type -- PRJNA386184 25470052 0.7129 2017/5/24 SRX2804489 RNAseq morc6-3 floral bud plant 1 flower bud Col-0 morc6-3 -- PRJNA386485 35053195 0.9127 2018/1/2 SRX2804486 RNAseq WT floral bud plant 1 flower bud Col-0 wild type -- PRJNA386485 33978282 0.933 2018/1/2 GSM2636296 Col-0_rep1 leaves Col-0 -- -- PRJNA387601 24671699 0.9476 2018/11/8 GSM2640548 lux-6_R1 seedlings Col-0 lux -/- -- PRJNA388036 12245064 0.9139 2018/2/7 SRX2863363 cbp20-1 seedlings Col-0 cbp20 (CAP-BINDING PROTEIN 20) mutant -- PRJNA388207 33465899 0.8978 2018/1/2 SRX2863366 cbp80-1 seedlings Col-0 cbp80 (CAP-BINDING PROTEIN 80) mutant -- PRJNA388207 24263036 0.8903 2018/1/2 SRX2863360 se-1 seedlings Col-0 se-1 (SERRATE) mutant -- PRJNA388207 24896724 0.9084 2018/1/2 SRX2863357 WT-1 seedlings Col-0 wild type -- PRJNA388207 27011732 0.9037 2018/1/2 GSM2643669 athb15 24 hSL replicate 1 seed Col-0 athb15 -- PRJNA388407 20497130 0.9102 2017/8/16 GSM2643671 athb25 24 hSL replicate 1 seed Col-0 athb25 -- PRJNA388407 29330869 0.9108 2017/8/16 GSM2643673 hat2 24 hSL replicate 1 seed Col-0 hat2 -- PRJNA388407 34544294 0.912 2017/8/16 GSM2643675 lmi1 24 hSL replicate 1 seed Col-0 lmi1 -- PRJNA388407 34841244 0.9121 2017/8/16 GSM2643677 obp1 24 hSL replicate 1 seed Col-0 obp1 -- PRJNA388407 31108935 0.9078 2017/8/16 GSM2643679 smb 24 hSL replicate 1 seed Col-0 smb -- PRJNA388407 19561605 0.9021 2017/8/16 GSM2643681 vnd2 24 hSL replicate 1 seed Col-0 vnd2 -- PRJNA388407 29620597 0.9092 2017/8/16 GSM2643667 Col-0 (wt) 24 hSL replicate 1 seed Col-0 wild type -- PRJNA388407 22370702 0.9054 2017/8/16 GSM2643683 wrky14 24 hSL replicate 1 seed Col-0 wrky14 -- PRJNA388407 35751963 0.9096 2017/8/16 GSM2648035 med5a-1 med5b-1 rep1 whole rosette Col-0 med5a-1 med5b-1 -- PRJNA388948 25334100 0.9652 2019/7/2 GSM2648032 ref2-1 rep1 whole rosette Col-0 ref2-1 -- PRJNA388948 26424329 0.9611 2019/7/2 GSM2648041 ref2-1 med5a-1 med5b-1 rep1 whole rosette Col-0 ref2-1 med5a-1 med5b-1 -- PRJNA388948 23090449 0.9614 2019/7/2 GSM2648029 ref5-1 rep1 whole rosette Col-0 ref5-1 -- PRJNA388948 26369127 0.9528 2019/7/2 GSM2648038 ref5-1 med5a-1 med5b-1 rep1 whole rosette Col-0 ref5-1 med5a-1 med5b-1 -- PRJNA388948 23039057 0.9195 2019/7/2 GSM2648026 wild type rep1 whole rosette Col-0 wild type -- PRJNA388948 26348949 0.959 2019/7/2 SRX2899192 Col0_center_rep1 leaves Col-0 Col-0 -- PRJNA389787 9711355 0.7911 2017/12/6 SRX2899191 Col0_margin_rep1 leaves Col-0 Col-0 -- PRJNA389787 7340342 0.7725 2017/12/6 SRX2899204 4KO_center_rep1 leaves Col-0 tcp2-tcp3-tcp4-tcp10 mutant -- PRJNA389787 10070008 0.789 2017/12/6 SRX2899203 4KO_margin_rep1 leaves Col-0 tcp2-tcp3-tcp4-tcp10 mutant -- PRJNA389787 10848044 0.797 2017/12/6 SRX2899198 2KO_center_rep1 leaves Col-0 tcp2-tcp4 mutant -- PRJNA389787 6603952 0.7948 2017/12/6 SRX2899197 2KO_margin_rep1 leaves Col-0 tcp2-tcp4 mutant -- PRJNA389787 12422075 0.7973 2017/12/6 GSM2683258 RNA-Seq on se-1 early globular embryos rep1 embryo Col-0 se-1; serrate-1 -- PRJNA391826 20708775 0.8847 2017/6/27 GSM2683260 RNA-Seq on wild-type of 32-64 cell embryos rep1 embryo Col-0 wild type -- PRJNA391826 20751215 0.8428 2017/6/27 SRX2983276 AtRS_R3 root Col-0 -- VOC PRJNA392864 11072541 0.7828 2017/9/1 SRX2983288 AtPDA_S1 shoot Col-0 -- Mock PRJNA392864 15177070 0.8905 2017/9/1 SRX2983280 AtRS_S3 shoot Col-0 -- VOC PRJNA392864 19529669 0.8706 2017/9/1 SRX2982243 Mock-BR1 seedlings Col-0 -- Mock PRJNA393046 22957021 0.9217 2017/7/4 SRX2982239 cerk1_Lam6-BR3 seedlings Col-0 cerk1-2 mutant -- PRJNA393046 24473162 0.9177 2017/7/4 SRX2982240 Col0_Lam6-BR1 seedlings Col-0 wild type 1,3-b-glucan hexasaccharide PRJNA393046 26734080 0.92 2017/7/4 GSM2700473 RNA-seq_h3.1kd-1_rep1 seedlings Col-0 h3.1kd-1 -- PRJNA393891 33789224 0.923 2017/8/22 GSM2700475 RNA-seq_h3.1kd-2_rep1 seedlings Col-0 h3.1kd-2 -- PRJNA393891 32569479 0.9229 2017/8/22 GSM2700471 RNA-seq_Col_rep1 seedlings Col-0 wild type -- PRJNA393891 36924560 0.914 2017/8/22 SRX3004692 0h_1 hypocotyl Col-0 -- -- PRJNA394215 21120944 0.9289 2017/10/11 SRX3004704 12h_1 hypocotyl Col-0 -- -- PRJNA394215 20148594 0.9284 2017/10/11 SRX3004695 1h_1 hypocotyl Col-0 -- -- PRJNA394215 14895462 0.9131 2017/10/11 SRX3004707 24h_1 hypocotyl Col-0 -- -- PRJNA394215 24536940 0.9254 2017/10/11 SRX3004698 3h_1 hypocotyl Col-0 -- -- PRJNA394215 20847686 0.9247 2017/10/11 SRX3004701 6h_1 hypocotyl Col-0 -- -- PRJNA394215 15910485 0.9293 2017/10/11 GSM2704840 ABA_1d_rep1 leaves Col-0 -- ABA PRJNA394661 26557130 0.7502 2017/8/14 GSM2704828 ABA_6h_rep1 leaves Col-0 -- ABA PRJNA394661 29125926 0.7689 2017/8/14 GSM2704831 AMF1_6h_rep1 leaves Col-0 -- AMH1 PRJNA394661 44111011 0.7434 2017/8/14 GSM2704852 AMF4_3d_rep1 leaves Col-0 -- AMH4 PRJNA394661 18350744 0.7203 2017/8/14 GSM2704837 DMSO_1d_rep1 leaves Col-0 -- DMSO PRJNA394661 19507979 0.7419 2017/8/14 GSM2704825 DMSO_6h_rep1 leaves Col-0 -- DMSO PRJNA394661 17294471 0.7138 2017/8/14 GSM2717014 MgCl2_day3_10h_1 leaves Col-0 -- Mock PRJNA395664 21861406 0.8799 2018/2/13 GSM2717004 MgCl2_day3_15h_1 leaves Col-0 -- Mock PRJNA395664 21543468 0.8895 2018/2/13 GSM2717010 MgCl2_day4_9h_1 leaves Col-0 -- Mock PRJNA395664 22756137 0.8878 2018/2/13 GSM2716999 Rpm1_day3_10h_1 leaves Col-0 -- Rpm1 PRJNA395664 20755542 0.8937 2018/2/13 GSM2717001 Rpm1_day3_15h_1 leaves Col-0 -- Rpm1 PRJNA395664 20547899 0.894 2018/2/13 GSM2717007 Rpm1_day4_9h_1 leaves Col-0 -- Rpm1 PRJNA395664 21377152 0.8938 2018/2/13 SRX3041204 A12-2 seedlings Col-0 -- -- PRJNA395944 24354803 0.8729 2018/6/27 SRX3041159 A14-1 seedlings Col-0 -- -- PRJNA395944 22046525 0.8945 2018/6/27 SRX3041205 drirD-2 seedlings Col-0 -- -- PRJNA395944 18574174 0.9377 2018/6/27 SRX3042689 A2+_2 Leaf Col-0 METo1+ -- PRJNA395995 45330337 0.7316 2019/8/1 SRX3042692 WT_1 Leaf Col-0 wild type -- PRJNA395995 43572253 0.8362 2019/8/1 GSM2735475 Col-0 ctrl rep1 rosette leaf Col-0 Col-0 Mock PRJNA397570 21497045 0.8905 2017/8/11 GSM2735478 Col-0 ozone rep1 rosette leaf Col-0 Col-0 ozone 2h PRJNA397570 27906929 0.8963 2017/8/11 GSM2751087 S1 seedlings Col-0 wild type Mock PRJNA399521 71329984 0.9233 2018/2/27 GSM2751090 SB1 seedlings Col-0 wild type containing bacterial strain SA187 PRJNA399521 157168358 0.8414 2018/2/27 GSM2751089 B1 seedlings Col-0 wild type containing bacterial strain SA187，without100 mM NaCl and cultivated Hor additional 14 days PRJNA399521 157168358 0.8399 2018/2/27 GSM2751088 M1 seedlings Col-0 wild type without100 mM NaCl and cultivated Hor additional 12 days. PRJNA399521 91037038 0.9536 2018/2/27 GSM2752187 ENAP1ox/ein3eil1 4 hour air RNAseq, rep1 whole seedling Col-0 ENAP1ox/ein3eil1 in COL background air PRJNA399701 32749776 0.7566 2019/8/27 GSM2752183 ein3eil1 4 hour air RNAseq, rep1 whole seedling Col-0 ein3eil1 in COL background air PRJNA399701 28913728 0.7337 2019/8/27 GSM2781396 35S:TCP5 0H-1 inflorescence Col-0 35S -- PRJNA406971 25441620 0.9483 2018/3/14 GSM2781399 35S:TCP5 2H-1 inflorescence Col-0 35S -- PRJNA406971 24788312 0.9417 2018/3/14 GSM2781402 35S:TCP5 8H-1 inflorescence Col-0 35S -- PRJNA406971 27684257 0.927 2018/3/14 GSM2781387 Col0 0H-1 inflorescence Col-0 control for induction -- PRJNA406971 27592495 0.8835 2018/3/14 GSM2781390 Col0 2H-1 inflorescence Col-0 control for induction -- PRJNA406971 37956458 0.9467 2018/3/14 GSM2781393 Col0 8H-1 inflorescence Col-0 control for induction -- PRJNA406971 31022604 0.9497 2018/3/14 GSM2781379 tcp5tcp13tcp17 k.o.-1 petal Col-0 Tcp5Tcp13Tcp17 KO -- PRJNA406971 28329090 0.95 2018/3/14 GSM2781373 Col0 control for k.o.-1 petal Col-0 control for KO -- PRJNA406971 35678014 0.9511 2018/3/14 GSM2781381 Col0 control for o.e.-1 petal Col-0 control for overexpression -- PRJNA406971 8326409 0.9004 2018/3/14 GSM2781384 pATML1:TCP5 o.e.-1 petal Col-0 pATML1 -- PRJNA406971 21379503 0.9305 2018/3/14 SRX3182102 agb1-BL rep2 seedlings Col-0 agb1-2 mutant -- PRJNA407036 20532712 0.8914 2018/12/31 SRX3182106 cry1 cry2-BL rep2 seedlings Col-0 cry1 cry2 double mutant -- PRJNA407036 21223340 0.9047 2018/12/31 SRX3182108 hy5-BL rep2 seedlings Col-0 hy5 mutant -- PRJNA407036 27645119 0.88 2018/12/31 SRX3182104 WT-BL rep2 seedlings Col-0 wild type -- PRJNA407036 26533328 0.8815 2018/12/31 GSM2786261 WTCol0-0-1 aerial seedling Col-0 Wild type -- PRJNA407573 29641451 0.9669 2018/9/12 GSM2786264 caa39-0-1 aerial seedling Col-0 caa39 mutant -- PRJNA407573 33595328 0.9625 2018/9/12 GSM2796127 ebs shl-1 seedlings Col-0 ebs shl -- PRJNA412461 18522205 0.8209 2018/7/20 GSM2796130 ebs shl lhp1-1 seedlings Col-0 ebs shl lhp1 -- PRJNA412461 17951659 0.7755 2018/7/20 GSM2796133 emf1-1 seedlings Col-0 emf1 -- PRJNA412461 20189475 0.8576 2018/7/20 GSM2796124 lhp1-1 seedlings Col-0 lhp1 -- PRJNA412461 17009170 0.7957 2018/7/20 GSM2796121 WT-1 seedlings Col-0 wild type -- PRJNA412461 19262535 0.8441 2018/7/20 GSM2796797 UBQ10:YFP-ARF19 line treated with 10 μM IAA for 2h, replicate 1 Whole seedlings Col-0 UBQ10:YFP-ARF19 IAA 2h PRJNA412513 51689698 0.8143 2019/7/28 GSM2796805 UBQ10:YFP-ARF19k line treated with 10 μM IAA for 2h, replicate 1 Whole seedlings Col-0 UBQ10:YFP-ARF19k IAA 2h PRJNA412513 43555154 0.8659 2019/7/28 GSM2796801 UBQ10:YFP-ARF19k line, replicate 1 Whole seedlings Col-0 UBQ10:YFP-ARF19k mock PRJNA412513 42568829 0.8543 2019/7/28 GSM2796789 Col-0 treated with 10 μM IAA for 2h, replicate 1 Whole seedlings Col-0 wild type IAA 2h PRJNA412513 47185075 0.8568 2019/7/28 GSM2796786 Col-0, replicate 2 Whole seedlings Col-0 wild type mock PRJNA412513 47433406 0.8437 2019/7/28 GSM2801321 col rep1 leaf, stem, root Col-0 wild type -- PRJNA412814 24001710 0.7331 2018/4/2 GSM2802772 1d-SIG_rep1 seedlings Col-0 sigma factor 2-2 mutant -- PRJNA412889 6978931 0.8399 2019/1/23 GSM2802778 7d-SIG_rep1 seedlings Col-0 sigma factor 2-2 mutant -- PRJNA412889 9486852 0.885 2019/1/23 GSM2802769 1d-WT_rep1 seedlings Col-0 wild type -- PRJNA412889 8434083 0.8088 2019/1/23 GSM2802775 7d-WT_rep1 seedlings Col-0 wild type -- PRJNA412889 11462267 0.8921 2019/1/23 GSM2803874 ATH_24h_n=1 root Col-0 -- Mock PRJNA413141 54639321 0.9003 2018/2/8 GSM2809115 gun1-1+NF1 whole seedling Col-0 gun1-1 5μM Norflurazon PRJNA414070 8688118 0.9027 2019/10/21 GSM2809118 gun4-1+NF1 whole seedling Col-0 gun4-1 5μM Norflurazon PRJNA414070 8919324 0.9149 2019/10/21 GSM2809121 gun5-1+NF1 whole seedling Col-0 gun5-1 5μM Norflurazon PRJNA414070 7326844 0.9015 2019/10/21 GSM2809112 Col-0 + NF1 whole seedling Col-0 wild type 5μM Norflurazon PRJNA414070 9526647 0.9151 2019/10/21 GSM2809930 Col-0 root +Fe+Cu Rep1 root Col-0 wild type +He, +Cu PRJNA414125 17676459 0.8678 2018/3/1 GSM2809939 Col-0 root +Fe-Cu Rep1 root Col-0 wild type +He, -Cu PRJNA414125 17477134 0.8686 2018/3/1 GSM2809945 Col-0 root -Fe+Cu Rep1 root Col-0 wild type -He, +Cu PRJNA414125 21173604 0.8357 2018/3/1 GSM2809951 Col-0 root -Fe-Cu Rep1 root Col-0 wild type -He, -Cu PRJNA414125 17982824 0.8702 2018/3/1 GSM2809957 Col-0 rosettes +Fe+Cu Rep1 rosette leaf Col-0 wild type +He, +Cu PRJNA414125 19736820 0.8973 2018/3/1 GSM2809966 Col-0 rosettes +Fe-Cu Rep1 rosette leaf Col-0 wild type +He, -Cu PRJNA414125 18229295 0.8613 2018/3/1 GSM2809972 Col-0 rosettes -Fe+Cu Rep1 rosette leaf Col-0 wild type -He, +Cu PRJNA414125 16853554 0.889 2018/3/1 GSM2809978 Col-0 rosettes -Fe-Cu Rep1 rosette leaf Col-0 wild type -He, -Cu PRJNA414125 17500339 0.8913 2018/3/1 SRX3300485 RNA WT Roots BA Rep1 root Col-0 wild type BA PRJNA415015 18218719 0.8861 2018/9/27 SRX3300484 RNA WT Roots Control Rep1 root Col-0 wild type Mock PRJNA415015 16415292 0.8975 2018/9/27 SRX3300500 RNA WT Shoots BA Rep3 shoot Col-0 wild type BA PRJNA415015 17800638 0.886 2018/9/27 SRX3300501 RNA WT Shoots Control Rep3 shoot Col-0 wild type Mock PRJNA415015 26553302 0.8854 2018/9/27 SRX3323679 ibm1-3_HL48_r1 leaves Col-0 -- high light oH 50000 lux Hor 48h PRJNA415344 23571211 0.8901 2018/3/1 SRX3389702 Col-0, 0.5 mM SA sprayed 24hrs, biological replicate 1 leaves Col-0 -- SA PRJNA416871 34596016 0.9584 2017/11/14 SRX3389709 upl3-4, 0.5 mM SA sprayed 24hrs, biological replicate 2 leaves Col-0 -- SA PRJNA416871 32175168 0.9641 2017/11/14 GSM2840118 msh1 memory 31 whole plant Col-0 msh1?memory -- PRJNA417181 14672888 0.8845 2018/6/1 GSM2840115 wildtype 22 whole plant Col-0 wild type -- PRJNA417181 14084846 0.89 2018/6/1 GSM2842857 agb1-BL rep1 seedlings Col-0 agb1-2 mutant -- PRJNA417266 24700215 0.8989 2018/5/31 GSM2842861 cry1 cry2-BL rep1 seedlings Col-0 cry1 cry2 double mutant -- PRJNA417266 22134233 0.901 2018/5/31 GSM2842859 hy5-BL rep1 seedlings Col-0 hy5 mutant -- PRJNA417266 23369301 0.8911 2018/5/31 GSM2842855 WT-BL rep1 seedlings Col-0 wild type -- PRJNA417266 30769591 0.8802 2018/5/31 GSM2857924 elf6-3ref6C, rep1 flower Col-0 elf6-3ref6C -- PRJNA418578 29940184 0.7989 2018/7/9 GSM2857921 elf6-3ref6Cjmj13G, rep1 flower Col-0 elf6-3ref6Cjmj13G -- PRJNA418578 34694294 0.8101 2018/7/9 GSM2857927 ref6-3, rep1 flower Col-0 ref6-3 -- PRJNA418578 30196220 0.8101 2018/7/9 GSM2857930 ref6C, rep1 flower Col-0 ref6C -- PRJNA418578 33379007 0.8121 2018/7/9 GSM2857918 WT, rep1 flower Col-0 wild type -- PRJNA418578 33240642 0.8187 2018/7/9 GSM2858388 Wild-type 4 whole plant Col-0 wild type -- PRJNA418775 22920038 0.9019 2018/4/16 GSM2859813 mock rep1 seedling Col-0 MUTE cDNA in pER8 / Col-0 DMSO 8hrs(Mock) PRJNA418787 49607598 0.9024 2019/11/21 GSM2859816 estradiol rep1 seedling Col-0 MUTE cDNA in pER8 / Col-0 estradiol 10 uM 8hrs PRJNA418787 48494304 0.8955 2019/11/21 GSM2862616 Grafted bottom after 12 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 14981861 0.9075 2018/2/5 GSM2862656 Grafted bottom after 120 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 15227281 0.9385 2018/2/5 GSM2862666 Grafted bottom after 168 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 17298236 0.9387 2018/2/5 GSM2862626 Grafted bottom after 24 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 9931152 0.9122 2018/2/5 GSM2862676 Grafted bottom after 240 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 18412708 0.8865 2018/2/5 GSM2862636 Grafted bottom after 48 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 14237616 0.9282 2018/2/5 GSM2862606 Grafted bottom after 6 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 16574382 0.9356 2018/2/5 GSM2862646 Grafted bottom after 72 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 20671371 0.9048 2018/2/5 GSM2862618 Grafted top after 12 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 14051685 0.9517 2018/2/5 GSM2862658 Grafted top after 120 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 20995740 0.925 2018/2/5 GSM2862668 Grafted top after 168 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 13689005 0.9469 2018/2/5 GSM2862628 Grafted top after 24 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 15051937 0.9381 2018/2/5 GSM2862678 Grafted top after 240 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 11464251 0.9257 2018/2/5 GSM2862638 Grafted top after 48 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 17215385 0.9325 2018/2/5 GSM2862608 Grafted top after 6 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 18328899 0.9414 2018/2/5 GSM2862648 Grafted top after 72 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 10566127 0.8735 2018/2/5 GSM2862620 Intact after 12 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 18971770 0.9282 2018/2/5 GSM2862660 Intact after 120 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 16304477 0.9372 2018/2/5 GSM2862670 Intact after 168 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 16663038 0.9213 2018/2/5 GSM2862630 Intact after 24 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 23175754 0.9453 2018/2/5 GSM2862680 Intact after 240 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 18330592 0.9329 2018/2/5 GSM2862640 Intact after 48 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 22192148 0.9425 2018/2/5 GSM2862610 Intact after 6 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 13056341 0.9433 2018/2/5 GSM2862650 Intact after 72 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 10240938 0.939 2018/2/5 GSM2862604 Intact at 0 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 17002451 0.9358 2018/2/5 GSM2862622 Separated bottom after 12 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 12342195 0.868 2018/2/5 GSM2862662 Separated bottom after 120 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 17550587 0.9241 2018/2/5 GSM2862672 Separated bottom after 168 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 12378709 0.9392 2018/2/5 GSM2862632 Separated bottom after 24 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 13049419 0.894 2018/2/5 GSM2862682 Separated bottom after 240 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 21227065 0.9272 2018/2/5 GSM2862642 Separated bottom after 48 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 11165453 0.93 2018/2/5 GSM2862612 Separated bottom after 6 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 17644735 0.9291 2018/2/5 GSM2862652 Separated bottom after 72 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 16788579 0.9361 2018/2/5 GSM2862624 Separated top after 12 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 14092368 0.9332 2018/2/5 GSM2862664 Separated top after 120 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 28024409 0.8881 2018/2/5 GSM2862674 Separated top after 168 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 21807733 0.9383 2018/2/5 GSM2862634 Separated top after 24 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 13906628 0.9153 2018/2/5 GSM2862684 Separated top after 240 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 16670276 0.9141 2018/2/5 GSM2862644 Separated top after 48 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 22920477 0.9388 2018/2/5 GSM2862614 Separated top after 6 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 13745626 0.9257 2018/2/5 GSM2862654 Separated top after 72 hours rep1 hypocotyl Col-0 -- -- PRJNA419306 27002477 0.9426 2018/2/5 SRX3445260 Arabidopsis Col with Ethylene treatment root rep 1 root Col-0 Col-0 ET at 10 ppm Hor 4 h PRJNA421154 18777022 0.9204 2017/12/15 SRX3445268 Arabidopsis Col-0 root rep 1 root Col-0 Col-0 none PRJNA421154 21476537 0.892 2017/12/15 SRX3445262 Arabidopsis ein3eil1 with Ethylene treatment root rep 1 root Col-0 ein3eil1 ET at 10 ppm Hor 4 h PRJNA421154 20046597 0.9207 2017/12/15 SRX3445270 Arabidopsis ein3eil1 root rep 1 root Col-0 ein3eil1 none PRJNA421154 17527580 0.8811 2017/12/15 SRX3445272 Arabidopsis ein3eil1rhd6rsl1 with ethylene treatment root rep 1 root Col-0 ein3eil1rhd6rsl1 ET at 10 ppm Hor 4 h PRJNA421154 18632486 0.8628 2017/12/15 SRX3445264 Arabidopsis ein3eil1rhd6rsl1 root rep 1 root Col-0 ein3eil1rhd6rsl1 none PRJNA421154 11218797 0.9136 2017/12/15 SRX3445266 Arabidopsis rhd6rsl1 with Ethylene treatment root rep 1 root Col-0 rhd6rsl1 ET at 10 ppm Hor 4 h PRJNA421154 19230312 0.8376 2017/12/15 SRX3445258 Arabidopsis rhd6rsl1 root rep 1 root Col-0 rhd6rsl1 none PRJNA421154 21535819 0.9087 2017/12/15 SRX3452641 Day 10 cotyledons rep1 cotyledon Col-0 -- -- PRJNA421355 39028650 0.9219 2017/12/15 SRX3452638 Day 5 cotyledons rep1 cotyledon Col-0 -- -- PRJNA421355 18731062 0.9089 2017/12/15 SRX3452644 Day 10 leaf 1+2 rep1 leaves Col-0 -- -- PRJNA421355 40674292 0.9189 2017/12/15 SRX3452647 Day 16 leaf 1+2 rep1 leaves Col-0 -- -- PRJNA421355 40507302 0.9255 2017/12/15 SRX3452650 Day 31 leaf 12 apical rep1 leaves Col-0 -- -- PRJNA421355 25829669 0.9159 2017/12/15 SRX3452653 Day 31 leaf 12 basal rep1 leaves Col-0 -- -- PRJNA421355 55602387 0.9149 2017/12/15 GSM2882808 Col-RNA-rep1 seedlings Col-0 wild type -- PRJNA421832 20352713 0.8924 2018/3/1 SRX3460580 RNA-Seq analysis of esr3-2 mutant Arabidopsis thaliana 12-day-old seedlings rep3 seedlings Col-0 -- -- PRJNA421838 21564360 0.9754 2018/2/1 SRX3460581 RNA-Seq analysis of wild-type (JC66) Arabidopsis thaliana 12-day-old seedlings rep1 seedlings Col-0 -- -- PRJNA421838 25743861 0.9684 2018/2/1 SRX3466467 Intact_pLEC2_rep2 embryo Col-0 -- -- PRJNA422138 6822752 0.7705 2017/12/13 GSM2890275 ect2_1 seedlings Col-0 ECT2 T-DNA insertion mutant -- PRJNA422492 7352928 0.9034 2018/6/22 GSM2891443 dm_22C_1 seedlings Col-0 BBX18-/-BBX23-/- -- PRJNA422618 27777240 0.8598 2018/12/23 GSM2891446 dm_29C_1 seedlings Col-0 BBX18-/-BBX23-/- -- PRJNA422618 26739315 0.8655 2018/12/23 GSM2891449 pif4_22C_1 seedlings Col-0 PIF4-/- -- PRJNA422618 32463086 0.858 2018/12/23 GSM2891452 pif4_29C_1 seedlings Col-0 PIF4-/- -- PRJNA422618 30262690 0.8611 2018/12/23 GSM2891437 WT_22C_1 seedlings Col-0 wild type Mock PRJNA422618 26869908 0.8759 2018/12/23 GSM2891440 WT_29C_1 seedlings Col-0 wild type heat 29 PRJNA422618 33943397 0.8736 2018/12/23 GSM2897859 RNAseq_A_dnaj1_rep1 flower bud Col-0 dnaj1 -- PRJNA427202 27269416 0.9235 2018/12/6 GSM2897856 RNAseq_A_dnaj1_2_rep1 flower bud Col-0 dnaj1, dnaj2 -- PRJNA427202 26177925 0.9169 2018/12/6 GSM2897862 RNAseq_A_dnaj2_rep1 flower bud Col-0 dnaj2 -- PRJNA427202 23456196 0.9086 2018/12/6 GSM2897868 RNAseq_A_suvh1_rep1 flower bud Col-0 suvh1 -- PRJNA427202 33628024 0.9209 2018/12/6 GSM2897865 RNAseq_A_suvh1_3_rep1 flower bud Col-0 suvh1, suvh3 -- PRJNA427202 24382262 0.921 2018/12/6 GSM2897871 RNAseq_A_suvh3_rep1 flower bud Col-0 suvh3 -- PRJNA427202 29178009 0.9186 2018/12/6 GSM2897874 RNAseq_A_WT_rep1 flower bud Col-0 wild type -- PRJNA427202 27463197 0.8878 2018/12/6 GSM2897877 RNAseq_B_WTcontrol_rep1 leaves Col-0 wild type -- PRJNA427202 20423903 0.9448 2018/12/6 GSM2904733 Col-0-1 rep1 seed Col-0 wild type -- PRJNA427587 16049374 0.9044 2018/2/15 GSM2904739 Col-0-2 rep1 seed Col-0 wild type -- PRJNA427587 21718673 0.9005 2018/2/15 GSM2906496 Non-stressed VaWRKY14-overexpressing plants replicate 1 whole plant Col-0 VaWRKY14-overexpressing -- PRJNA427817 23552674 0.8826 2018/12/2 GSM2906492 Non-stressed WT plants replicate 1 whole plant Col-0 Wild type Mock PRJNA427817 22795989 0.8573 2018/12/2 GSM2906494 Drought-stressed WT plants replicate 1 whole plant Col-0 Wild type drought PRJNA427817 23509631 0.7636 2018/12/2 GSM2913051 mta mRNA-seq rep1 leaves Col-0 ABI3 -- PRJNA428511 23659032 0.8801 2018/11/9 GSM2913047 WT mRNA-seq rep1 leaves Col-0 Wild type -- PRJNA428511 22883341 0.891 2018/11/9 GSM2913063 mta GMUCT rep1 leaves Col-0 ABI3 -- PRJNA428514 40437878 0.8306 2018/11/9 GSM2915671 cml39_rep1 seedlings Col-0 cml39 -/- -- PRJNA429044 23354799 0.8922 2018/5/1 GSM2915669 wt_rep1 seedlings Col-0 wild type -- PRJNA429044 25674103 0.8945 2018/5/1 GSM2915886 BA_1 seedlings Col-0 -- BA PRJNA429126 21745917 0.9049 2018/10/1 GSM2915883 Control_1 seedlings Col-0 -- Mock PRJNA429126 21730526 0.9104 2018/10/1 GSM3154469 clf-29 swn-4 rep1 seedlings Col-0 clf-29 swn-4 -- PRJNA429247 23896240 0.9221 2019/2/4 GSM2916556 swn rep1 seedlings Col-0 swn-4 -/- -- PRJNA429247 18630733 0.9178 2019/2/4 GSM2916550 wt rep1 seedlings Col-0 wild type -- PRJNA429247 24247121 0.9096 2019/2/4 GSM2932248 RNAseq_col0_for_ZF108-TET1cd_T3_rep1 leaves Col-0 Col-0 -- PRJNA429659 21662611 0.854 2018/2/19 GSM2933113 tri_2h_r1 seedlings Col-0 Col-0 wrky18 wrky40 wrky33 triple mutant Hlg22-treated PRJNA429781 22205972 0.8865 2019/1/23 GSM2933110 tri_0h_r1 seedlings Col-0 Col-0 wrky18 wrky40 wrky33 triple mutant untreated PRJNA429781 26219061 0.8875 2019/1/23 GSM2933107 wt_2h_r1 seedlings Col-0 wild type Hlg22 2h PRJNA429781 22287545 0.8823 2019/1/23 GSM2933104 wt_0h_r1 seedlings Col-0 wild type Mock PRJNA429781 25192921 0.8906 2019/1/23 GSM2934452 MLAZA_1 whole plant Col-0 msh1 memory line -- PRJNA429824 17857238 0.9361 2019/1/23 GSM2934437 Col0AZA_1 whole plant Col-0 wild type 5-azacytidine PRJNA429824 12265605 0.9441 2019/1/23 GSM2934431 Col0_1 whole plant Col-0 wild type Mock PRJNA429824 17889362 0.9354 2019/1/23 SRX3563387 hae-3hsl2-3_1_1 flower receptacles Col-0 mutant -- PRJNA430092 61984768 0.9374 2018/1/15 SRX3563374 hae-3hsl2-3_2_1 flower receptacles Col-0 mutant -- PRJNA430092 45181510 0.9239 2018/1/15 SRX3563384 nev-3_1_3 flower receptacles Col-0 mutant -- PRJNA430092 50356568 0.9274 2018/1/15 SRX3563376 nev-3_2_2 flower receptacles Col-0 mutant -- PRJNA430092 34795237 0.9045 2018/1/15 SRX4727335 serk1-1_1 flower receptacles Col-0 serk1-1 -- PRJNA430092 47627253 0.9247 2018/9/21 SRX4727338 serk1-L326F_1 flower receptacles Col-0 serk1-1 -- PRJNA430092 48680585 0.9199 2018/9/21 SRX3563394 hae-3hsl2-3serk1-LF_2_1 flower receptacles Col-0 suppressor -- PRJNA430092 46433080 0.9324 2018/1/15 SRX3563378 nev-3_serk1-5_2_1 flower receptacles Col-0 suppressor -- PRJNA430092 39055651 0.9084 2018/1/15 SRX3563386 Col_1_3 flower receptacles Col-0 wild type -- PRJNA430092 71109655 0.9361 2018/1/15 SRX3563381 Col_2_1 flower receptacles Col-0 wild type -- PRJNA430092 42941068 0.9318 2018/1/15 SRX4727332 Col_wt_1 flower receptacles Col-0 wild type -- PRJNA430092 54960838 0.9267 2018/9/21 GSM2941988 S1 bZIP knockdown + Est replicate 1 seedlings Col-0 bZIP1/bZIP53 ko + inducible group bZIP2/-11/-44 knockdown -- PRJNA430725 9624116 0.8723 2018/1/25 GSM2941982 SnRK knockdown + Est replicate 1 seedlings Col-0 snrk1-alpha-1 ko + inducible snrk1-alpha-2 knockdown -- PRJNA430725 7445561 0.8664 2018/1/25 GSM2947242 nia1/2 DMSO_rep1 seedlings Col-0 nia1/2 DMSO PRJNA431488 11225726 0.8594 2018/1/29 GSM2947244 nia1/2 isoxaben_rep1 seedlings Col-0 nia1/2 isoxaben PRJNA431488 15609344 0.8892 2018/1/29 GSM2947236 Col-0 DMSO_rep1 seedlings Col-0 wild type Mock PRJNA431488 16050190 0.901 2018/1/29 GSM2947239 Col-0 isoxaben_rep1 seedlings Col-0 wild type isoxaben PRJNA431488 11178742 0.8976 2018/1/29 GSM2948188 RNAseq_4d_exp1 seedlings Col-0 -- -- PRJNA431621 17029356 0.8863 2018/4/16 SRX3627486 spy-3 replicate=biological replicate 3 seed Col-0 spy-3 2 umol ABA PRJNA432106 24443904 0.9437 2019/2/1 SRX3627483 Col-0 replicate=biological replicate 3 seed Col-0 wild type 2 umol ABA PRJNA432106 26239243 0.9131 2019/2/1 SRX3646508 FtsHi5-RNAi rep2 leaves Col-0 -- -- PRJNA432123 20601997 0.8372 2018/2/5 SRX3646510 WT rep2 leaves Col-0 wild type -- PRJNA432123 24258586 0.8417 2018/2/5 GSM2974957 RNA-seq_rep1 seedlings Col-0 -- -- PRJNA432502 9930992 0.8812 2018/10/31 GSM2987689 atpabs_RNA-seq_rep1 2-week seedlings Col-0 atpabs mutant -- PRJNA433501 6869587 0.9211 2019/8/14 GSM2987687 col_RNA-seq_rep1 2-week seedlings Col-0 wild type -- PRJNA433501 7779688 0.9364 2019/8/14 GSM2992341 RNA-seq of bzr1-1D_M_1 hypocotyl Col-0 bzr1-1D Mock PRJNA433852 22735979 0.7042 2018/3/22 GSM2992339 RNA-seq of bzr1-1D_DH_1 hypocotyl Col-0 bzr1-1D PPZ plus DPI and H2O2 condition PRJNA433852 23366362 0.757 2018/3/22 GSM2992336 RNA-seq of bzr1-1D_D_1 hypocotyl Col-0 bzr1-1D PPZ plus DPI condition PRJNA433852 23409352 0.7856 2018/3/22 GSM2992347 RNA-seq of Col_M_1 hypocotyl Col-0 wild type Mock PRJNA433852 23301152 0.8346 2018/3/22 GSM2992344 RNA-seq of Col_D_1 hypocotyl Col-0 wild type PPZ plus DPI VS PPZ PRJNA433852 23318755 0.8203 2018/3/22 SRX5137609 ABA_6h_1_BGISEQ500 PE100 seedlings Col-0 -- ABA 6h PRJNA434180 22353640 0.965 2019/2/21 SRX5137605 DMSO_6h_2_BGISEQ500 PE75 seedlings Col-0 -- Mock PRJNA434180 33895931 0.9524 2018/12/16 SRX5137608 DMSO_6h_3_BGISEQ500 PE100 seedlings Col-0 -- Mock PRJNA434180 19800247 0.9536 2019/2/21 GSM3014777 npr1-1_untreated_1 seedlings Col-0 npr1-1 Mock PRJNA434313 21787666 0.9369 2018/6/8 GSM3014775 npr1-1_treated_1 seedlings Col-0 npr1-1 SA treated PRJNA434313 22940317 0.9394 2018/6/8 GSM3014785 npr1-1_npr4-4D_untreated_1 seedlings Col-0 npr1-1_npr4-4D Mock PRJNA434313 23532451 0.801 2018/6/8 GSM3014783 npr1-1_npr4-4D_treated_1 seedlings Col-0 npr1-1_npr4-4D SA treated PRJNA434313 21411503 0.8287 2018/6/8 GSM3014781 npr4-4D_untreated_1 seedlings Col-0 npr4-4D Mock PRJNA434313 21432369 0.9391 2018/6/8 GSM3014779 npr4-4D_treated_1 seedlings Col-0 npr4-4D SA treated PRJNA434313 22880618 0.9415 2018/6/8 GSM3014773 WT_untreated_1 seedlings Col-0 wild type Mock PRJNA434313 22679338 0.9386 2018/6/8 GSM3014771 WT_treated_1 seedlings Col-0 wild type SA PRJNA434313 23288875 0.9394 2018/6/8 SRX4045486 Before Dawn rep 1 aerial part Col-0 -- -- PRJNA435622 45328415 0.8026 2019/6/3 GSM3021215 GL0.5h1 7 days old whole seedling Col-0 wild type Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 20154681 0.9269 2019/12/18 GSM3021219 GL12h1 7 days old whole seedling Col-0 wild type Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 27718869 0.9337 2019/12/18 GSM3021221 GL24h1 7 days old whole seedling Col-0 wild type Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 27072891 0.9274 2019/12/18 GSM3021223 GL48h1 7 days old whole seedling Col-0 wild type Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 26747980 0.9237 2019/12/18 GSM3021217 GL6h1 7 days old whole seedling Col-0 wild type Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 25433814 0.9296 2019/12/18 GSM3021225 GL72h1 7 days old whole seedling Col-0 wild type Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 18503736 0.9328 2019/12/18 GSM3021227 HL0.5h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) PRJNA435737 25982363 0.904 2019/12/18 GSM3021231 HL12h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) PRJNA435737 32141529 0.9305 2019/12/18 GSM3021233 HL24h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) PRJNA435737 26363253 0.9323 2019/12/18 GSM3021235 HL48h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) PRJNA435737 27411000 0.9277 2019/12/18 GSM3021229 HL6h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) PRJNA435737 29072096 0.9192 2019/12/18 GSM3021237 HL72h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) PRJNA435737 14925114 0.9321 2019/12/18 GSM3021239 Recovery14h1 7 days old whole seedling Col-0 wild type High light (1200 μmol.m-2.s-1, leaf temperature: 22 oC) treatment, followed by recovery in Growth light (60 μmol.m-2.s-1, 22 oC) PRJNA435737 16614305 0.9367 2019/12/18 SRX3744331 drmy1_30D_flower_rep_2 flower Col-0 -- -- PRJNA435845 20600522 0.7348 2018/3/31 SRX3744339 Col_15D_leaf_rep_1 leaves Col-0 -- -- PRJNA435845 18669397 0.7471 2018/3/31 SRX3744333 drmy1_15D_leaf_rep_3 leaves Col-0 -- -- PRJNA435845 19156340 0.7295 2018/3/31 GSM3026967 cpr1 aba1_Rep1 seedlings Col-0 cpr1 aba1 -- PRJNA436256 18345384 0.8969 2018/10/9 GSM3026973 pTPR1-TPR1-HA_Rep1 seedlings Col-0 pTPR1-TPR1-HA -- PRJNA436256 22546303 0.8574 2018/10/9 GSM3026964 Col_Rep1 seedlings Col-0 wild type -- PRJNA436256 15820025 0.9215 2018/10/9 GSM3026970 Col__Rep1 seedlings Col-0 wild type -- PRJNA436256 16780402 0.91 2018/10/9 GSM3027906 cdk8-1 (dataset 2) rep1 rosette leaf Col-0 cdk8-1 -- PRJNA436416 13830570 0.9063 2019/2/22 GSM3027912 ref4-1 (dataset 2) rep1 rosette leaf Col-0 ref4-1 -- PRJNA436416 15223063 0.9426 2019/2/22 GSM3027903 ref4-3 (dataset 2) rep1 rosette leaf Col-0 ref4-3 -- PRJNA436416 14695955 0.9187 2019/2/22 GSM3027909 ref4-3 dk8-1 (dataset 2) rep1 rosette leaf Col-0 ref4-3 cdk8-1 -- PRJNA436416 14594647 0.945 2019/2/22 GSM3027900 WT (dataset 2) rep1 rosette leaf Col-0 wild type -- PRJNA436416 13495263 0.9205 2019/2/22 GSM3035092 Col-0 mRNA-Seq rep1 seedlings Col-0 -- -- PRJNA437500 16699265 0.8829 2018/10/23 SRX3778406 siz1-2 Rep2 seedlings Col-0 siz1-2 Mock PRJNA437617 24827150 0.8542 2018/9/11 SRX3778408 siz1-2 +HS Rep2 seedlings Col-0 siz1-2 heat PRJNA437617 23845743 0.8808 2018/9/11 SRX3778407 Col-0 Rep2 seedlings Col-0 wild type Mock PRJNA437617 22297581 0.8765 2018/9/11 SRX3778409 Col-0 +HS Rep2 seedlings Col-0 wild type heat PRJNA437617 29093704 0.8475 2018/9/11 GSM3037960 WT-1 apical hook Col-0 wild type -- PRJNA437964 16815807 0.7813 2019/2/13 GSM3040086 Col_0_rep1 seedlings Col-0 Col-0 -- PRJNA438240 14965147 0.8458 2018/6/26 GSM3056174 ago4-2_NaCl_Rep1 Germinating seeds Col-0 ago4-2 Salinity PRJNA439011 15166458 0.801 2019/9/30 GSM3056172 ago4-2_Control_Rep1 Germinating seeds Col-0 ago4-2 control PRJNA439011 11429027 0.7655 2019/9/30 GSM3056176 ago4-3_Control_Rep1 Germinating seeds Col-0 ago4-3 control PRJNA439011 15737095 0.8275 2019/9/30 GSM3056168 Col-0_Control_Rep1 Germinating seeds Col-0 wild type control PRJNA439011 24618875 0.9002 2019/9/30 SRX3823232 ANT-1 leaves Col-0 -- -- PRJNA439197 12969695 0.8909 2019/1/1 GSM3070202 bdrs_COLD_rep1 seedlings Col-0 bdrs triple mutant COLD PRJNA446045 23987555 0.9122 2019/8/8 GSM3070187 bdrs_DARK_rep1 seedlings Col-0 bdrs triple mutant DARK PRJNA446045 24237162 0.9319 2019/8/8 GSM3070205 bdrs_HEAT_rep1 seedlings Col-0 bdrs triple mutant HEAT PRJNA446045 15808560 0.9159 2019/8/8 GSM3070190 bdrs_LIGHT2h_rep1 seedlings Col-0 bdrs triple mutant LIGHT2h PRJNA446045 12955850 0.9366 2019/8/8 GSM3070193 bdrs_LIGHT4h_rep1 seedlings Col-0 bdrs triple mutant LIGHT4h PRJNA446045 13320405 0.9339 2019/8/8 GSM3070196 WT_COLD_rep1 seedlings Col-0 wild type COLD PRJNA446045 14045192 0.9073 2019/8/8 GSM3070178 wt_DARK_rep1 seedlings Col-0 wild type DARK PRJNA446045 8017001 0.9297 2019/8/8 GSM3070199 WT_HEAT_rep1 seedlings Col-0 wild type HEAT PRJNA446045 15195918 0.9201 2019/8/8 GSM3070181 wt_LIGHT2h_rep1 seedlings Col-0 wild type LIGHT2h PRJNA446045 12623322 0.9347 2019/8/8 GSM3070184 wt_LIGHT4h_rep1 seedlings Col-0 wild type LIGHT4h PRJNA446045 14046315 0.9359 2019/8/8 GSM3070163 bdr1_rep1 seedlings Col-0 bdr1 mutant (SALK_142108C) -- PRJNA446046 19843592 0.9455 2019/8/8 GSM3070166 bdr2_rep1 seedlings Col-0 bdr2 mutant (CS852350) -- PRJNA446046 15933367 0.9118 2019/8/8 GSM3070169 bdr3_rep1 seedlings Col-0 bdr3 mutant (SALK_059905) -- PRJNA446046 19661605 0.8376 2019/8/8 GSM3070172 bdrs_rep1 seedlings Col-0 bdrs triple mutant -- PRJNA446046 22310028 0.7288 2019/8/8 GSM3070175 fpa_rep1 seedlings Col-0 fpa mutant (fpa-7) -- PRJNA446046 19985439 0.8459 2019/8/8 GSM3070160 WT_rep1 seedlings Col-0 wild type -- PRJNA446046 18222044 0.9437 2019/8/8 GSM3070154 bdrs_2 seedlings Col-0 bdr triple mutant -- PRJNA446047 24465777 0.9163 2019/8/8 GSM3070157 fpa_3 seedlings Col-0 fpa single mutant (fpa-7) -- PRJNA446047 18442524 0.9212 2019/8/8 SRX3873888 2CS2 sepal Col-0 -- -- PRJNA448456 33982478 0.8974 2018/4/2 SRX3873884 4CS5 sepal Col-0 -- -- PRJNA448456 31645798 0.9017 2018/4/2 SRX3873883 8CS4 sepal Col-0 -- -- PRJNA448456 30236199 0.9012 2018/4/2 GSM3075911 cop1 replicate 1 seedlings Col-0 cop1-4 -- PRJNA448672 42812777 0.7951 2018/11/5 GSM3075914 spaQ replicate 1 seedlings Col-0 spaQ -- PRJNA448672 36771672 0.8272 2018/11/5 GSM3075908 Col-0 replicate 1 seedlings Col-0 wild type -- PRJNA448672 39116831 0.8359 2018/11/5 SRX3898692 PS_1 whole seedling Col-0 -- psNTP9 constitutive expression PRJNA449074 57577740 0.9131 2020/3/4 SRX3898688 DM_3 whole seedling Col-0 -- psNTP9-DM constitutive expression PRJNA449074 30315433 0.8916 2020/3/4 SRX3898689 WT_1 whole seedling Col-0 wild type none PRJNA449074 64051695 0.8919 2020/3/4 GSM3092002 det1-1_D_rep1 seedlings Col-0 det1-1 Dark PRJNA449911 30234495 0.8681 2018/8/31 GSM3092000 det1-1_L_rep1 seedlings Col-0 det1-1 Light PRJNA449911 25625838 0.9217 2018/8/31 GSM3092006 det1-1ubp22_L_rep1 seedlings Col-0 det1-1ubp22 Light PRJNA449911 32820563 0.923 2018/8/31 GSM3092004 ubp22_L_rep1 seedlings Col-0 ubp22 Light PRJNA449911 32582590 0.9139 2018/8/31 GSM3091998 WT_D_rep1 seedlings Col-0 wild type Dark PRJNA449911 37947816 0.9337 2018/8/31 GSM3091996 WT_L_rep1 seedlings Col-0 wild type Light PRJNA449911 30297164 0.9215 2018/8/31 SRX3960079 ZjZFN 3 whole plant Col-0 -- -- PRJNA450509 27431440 0.8817 2019/12/31 SRX3960081 Wild type 2 whole plant Col-0 wild type -- PRJNA450509 21989208 0.8934 2019/12/31 SRX3964267 35S-1 seedlings Col-0 35S:EMB2261 expressed in emb2261-2 -- PRJNA450889 30488604 0.8847 2018/4/19 SRX3964269 ABI3-2 seedlings Col-0 ABI3:EMB2261 expressed in emb2261-2 -- PRJNA450889 36939454 0.8783 2018/4/19 SRX3964265 Col-0-2 seedlings Col-0 Col-0 -- PRJNA450889 32916557 0.8839 2018/4/19 SRX4047579 Col-0-rep2 Seedling Col-0 -- -- PRJNA453424 27793060 0.9211 2019/5/31 SRX4047585 bes1DmEAR-HDA19-rep2 Seedling Col-0 -- -- PRJNA453424 35224997 0.9315 2019/5/31 SRX4047581 bes1DmEAR-rep1 Seedling Col-0 -- -- PRJNA453424 26774291 0.9328 2019/5/31 SRX3993281 35S:ABI3-rep3 Seedling Col-0 -- -- PRJNA453429 14706875 0.9251 2019/12/31 SRX3993279 Col-0-rep2 Seedling Col-0 -- -- PRJNA453429 13845665 0.9305 2019/12/31 SRX4459352 Col-0_ABA rep3 leaves Col-0 Col-0 ABA PRJNA453845 25077399 0.8847 2018/7/25 SRX4459356 Col-0 rep2 leaves Col-0 Col-0 Mock PRJNA453845 26275824 0.8047 2018/7/25 SRX4459343 abi5 rep3 leaves Col-0 abi5 no treatment PRJNA453845 34191921 0.8296 2018/7/25 SRX4459342 abi5_ABA rep1 leaves Col-0 abi5 treated with 100 μM ABA Hor 4 h PRJNA453845 24310081 0.8813 2018/7/25 SRX4459354 xiw1 rep2 leaves Col-0 xiw1 Mock PRJNA453845 30298728 0.8403 2018/7/25 SRX4459346 xiw1_ABA rep3 leaves Col-0 xiw1 treated with 100 μM ABA Hor 4 h PRJNA453845 25634472 0.8443 2018/7/25 SRX4020047 2d-M4 leaf Col-0 -- Mite-inHested PRJNA454529 19811977 0.9371 2019/6/1 SRX4020067 6d-M1 leaf Col-0 -- Mite-inHested PRJNA454529 20983800 0.938 2019/6/1 SRX4020057 6h-M2 leaf Col-0 -- Mite-inHested PRJNA454529 26968885 0.9461 2019/6/1 SRX4020051 2d-C4 leaf Col-0 -- Non-inHested control PRJNA454529 21930599 0.9486 2019/6/1 SRX4020049 6d-C2 leaf Col-0 -- Non-inHested control PRJNA454529 16187638 0.9509 2019/6/1 SRX4020061 6h-C2 leaf Col-0 -- Non-inHested control PRJNA454529 20598834 0.933 2019/6/1 GSM3137763 Col-0 WT Total 1 stem Col-0 wild type -- PRJNA470540 51604837 0.9574 2018/12/27 GSM3137768 Col-0 WT TRAP 1 stem Col-0 wild type TRAP -- PRJNA470540 41530424 0.9564 2018/12/27 GSM3138026 MIR394 OE rep1 5day whole seedlings Col-0 MIR394A overexpression -- PRJNA470574 23947767 0.7843 2019/10/31 GSM3138028 bin2-1 rep1 5day whole seedlings Col-0 bin2-1 -- PRJNA470574 23952299 0.7886 2019/10/31 GSM3138023 Col-0 rep1 5day whole seedlings Col-0 wild type -- PRJNA470574 23948582 0.7965 2019/10/31 GSM3138460 bzr1-D minus P_Exp 1 root Col-0 bzr1-D -- PRJNA470669 22256251 0.9096 2018/8/2 GSM3138457 Wild type plus P_Exp 1 root Col-0 wild type Mock PRJNA470669 21545031 0.9245 2018/8/2 GSM3138458 Wild type minus P_Exp 1 root Col-0 wild type Pi deHicient PRJNA470669 19701254 0.9271 2018/8/2 SRX4062703 pho2-P_limited-root-rep3 root Col-0 pho2 P_limited PRJNA470732 14516946 0.9431 2019/6/1 SRX4062687 pho2-P_replete-root-rep3 root Col-0 pho2 P_replete PRJNA470732 14080818 0.9256 2019/6/1 SRX4062666 pho2-P_resupplied-root-rep3 root Col-0 pho2 P_resupplied PRJNA470732 13177091 0.9426 2019/6/1 SRX4062668 phr1-1-P_limited-root-rep3 root Col-0 phr1-1 P_limited PRJNA470732 14500818 0.9417 2019/6/1 SRX4062656 phr1-1-P_replete-root-rep3 root Col-0 phr1-1 P_replete PRJNA470732 14926466 0.9401 2019/6/1 SRX4062652 phr1-1-P_resupplied-root-rep1 root Col-0 phr1-1 P_resupplied PRJNA470732 15165690 0.9404 2019/6/1 SRX4062682 phr1-2-P_limited-root-rep1 root Col-0 phr1-2 P_limited PRJNA470732 15221170 0.9346 2019/6/1 SRX4062683 phr1-2-P_replete-root-rep2 root Col-0 phr1-2 P_replete PRJNA470732 15599778 0.938 2019/6/1 SRX4062738 phr1-2-P_resupplied-root-rep1 root Col-0 phr1-2 P_resupplied PRJNA470732 15397906 0.9411 2019/6/1 SRX4062719 spx4-1-P_limited-root-rep3 root Col-0 spx4-1 P_limited PRJNA470732 12213582 0.9421 2019/6/1 SRX4062713 spx4-1-P_replete-root-rep3 root Col-0 spx4-1 P_replete PRJNA470732 21148104 0.933 2019/6/1 SRX4062744 spx4-1-P_resupplied-root-rep1 root Col-0 spx4-1 P_resupplied PRJNA470732 16097043 0.9404 2019/6/1 SRX4062674 Col-0-P_limited-root-rep3 root Col-0 wild type P_limited PRJNA470732 18166727 0.9441 2019/6/1 SRX4062662 Col-0-P_replete-root-rep3 root Col-0 wild type P_replete PRJNA470732 16655980 0.9438 2019/6/1 SRX4062755 Col-0-P_resupplied-root-rep3 root Col-0 wild type P_resupplied PRJNA470732 15006044 0.9395 2019/6/1 SRX4062691 pho2-P_limited-shoot-rep2 shoot Col-0 pho2 P_limited PRJNA470732 19300092 0.9268 2019/6/1 SRX4062688 pho2-P_replete-shoot-rep1 shoot Col-0 pho2 P_replete PRJNA470732 13625252 0.9162 2019/6/1 SRX4062663 pho2-P_resupplied-shoot-rep3 shoot Col-0 pho2 P_resupplied PRJNA470732 11673810 0.9181 2019/6/1 SRX4062667 phr1-1-P_limited-shoot-rep1 shoot Col-0 phr1-1 P_limited PRJNA470732 12965794 0.8888 2019/6/1 SRX4062654 phr1-1-P_replete-shoot-rep2 shoot Col-0 phr1-1 P_replete PRJNA470732 15418651 0.9235 2019/6/1 SRX4062661 phr1-1-P_resupplied-shoot-rep1 shoot Col-0 phr1-1 P_resupplied PRJNA470732 14901315 0.9232 2019/6/1 SRX4062762 phr1-2-P_limited-shoot-rep1 shoot Col-0 phr1-2 P_limited PRJNA470732 12587783 0.9239 2019/6/1 SRX4062735 phr1-2-P_replete-shoot-rep1 shoot Col-0 phr1-2 P_replete PRJNA470732 14628813 0.9181 2019/6/1 SRX4062732 phr1-2-P_resupplied-shoot-rep2 shoot Col-0 phr1-2 P_resupplied PRJNA470732 15195241 0.9172 2019/6/1 SRX4062716 spx4-1-P_limited-shoot-rep3 shoot Col-0 spx4-1 P_limited PRJNA470732 13942375 0.926 2019/6/1 SRX4062747 spx4-1-P_resupplied-shoot-rep1 shoot Col-0 spx4-1 P_resupplied PRJNA470732 14487408 0.9158 2019/6/1 SRX4062681 Col-0-P_replete-shoot-rep1 shoot Col-0 wild type P_replete PRJNA470732 16323875 0.9261 2019/6/1 SRX4062752 Col-0-P_resupplied-shoot-rep3 shoot Col-0 wild type P_resupplied PRJNA470732 11559661 0.9284 2019/6/1 SRX4079875 pPTL_S_R2 shoot Col-0 -- -- PRJNA471232 18773454 0.9378 2018/5/17 GSM3140722 pyl duodecuple-control-r1 seedlings Col-0 pyl duodecuple 1/2 MS Hor 24 hours PRJNA471243 20254021 0.8402 2018/5/16 GSM3140716 pyl duodecuple-ABA-r1 seedlings Col-0 pyl duodecuple 100 microM ABA Hor 24 hours PRJNA471243 17972386 0.874 2018/5/16 GSM3140719 pyl duodecuple-osmotic stress-r1 seedlings Col-0 pyl duodecuple 300 mM mannitol Hor 24 hours PRJNA471243 18794774 0.7652 2018/5/16 GSM3140731 Col-0-control-r1 seedlings Col-0 wild type 1/2 MS Hor 24 hours PRJNA471243 18187249 0.916 2018/5/16 GSM3140725 Col-0-ABA-r1 seedlings Col-0 wild type 100 microM ABA Hor 24 hours PRJNA471243 18541863 0.9179 2018/5/16 GSM3140728 Col-0-osmotic stress-r1 seedlings Col-0 wild type 300 mM mannitol Hor 24 hours PRJNA471243 20924237 0.905 2018/5/16 SRX4093034 Col_FR_R_24hai_1 seed Col-0 -- HR_R light VS HR PRJNA471797 22553178 0.7668 2018/7/19 SRX4093033 Col_FR_24hai_3 seed Col-0 -- Mock PRJNA471797 16749808 0.7341 2018/7/19 GSM3146384 x01_ABA_L12_rep01 leaves Col-0 -- ABA 48h PRJNA472051 15951158 0.8985 2019/1/23 SRX4120863 Col-0h-4 aerial seedling Col-0 -- Mock PRJNA472448 20117469 0.9372 2018/5/24 SRX4120852 Col-3h-3 aerial seedling Col-0 -- dehydration 3h PRJNA472448 21918066 0.9459 2018/5/24 GSM3154218 trm5-1 mutant Rep 2 leaf Col-0 trm5 -/- -- PRJNA472997 56028081 0.8388 2019/8/28 SRX4130416 WT_cont-1 shoot Col-0 wild type Mock PRJNA473032 13120277 0.8634 2019/2/1 SRX4130393 WT_touch-3 shoot Col-0 wild type touch PRJNA473032 21081577 0.9054 2019/2/1 SRX4130398 WT_touch-12h30-rep3 shoot Col-0 wild type touch 12h30 PRJNA473032 23592957 0.9263 2019/2/1 SRX4130395 WT_touch-24h30-rep3 shoot Col-0 wild type touch 24h30 PRJNA473032 32398567 0.936 2019/2/1 SRX4130381 WT_touch-30min-rep3 shoot Col-0 wild type touch 30min PRJNA473032 22635373 0.9373 2019/2/1 GSM3162109 rrc1_Light_1 4day seedlings Col-0 rrc1-3 3h red light PRJNA473499 103705007 0.765 2019/9/26 GSM3162115 Col_Light_1 4day seedlings Col-0 wild type 3h red light PRJNA473499 60992214 0.9224 2019/9/26 GSM3162112 Col_Dark_1 4day seedlings Col-0 wild type control PRJNA473499 75127778 0.9195 2019/9/26 SRX4183546 B-cry1-2 Inflorescence stem Col-0 cry1 -- PRJNA475200 24070308 0.9192 2018/6/10 SRX4183548 B-WT-3 Inflorescence stem Col-0 wild type -- PRJNA475200 23900659 0.9179 2018/6/10 GSM3184457 ZT12_seedling_1 seedlings Col-0 wild type photoperiod* PRJNA475542 10441932 0.8708 2018/12/6 GSM3184472 ZT14_seedling_11 seedlings Col-0 wild type photoperiod* PRJNA475542 13203494 0.8936 2018/12/6 GSM3184499 ZT18_seedling_1 seedlings Col-0 wild type photoperiod* PRJNA475542 5446478 0.9036 2018/12/6 GSM3184528 ZT22_seedling_10 seedlings Col-0 wild type photoperiod* PRJNA475542 16522629 0.8449 2018/12/6 GSM3184401 ZT4_seedling_1 seedlings Col-0 wild type photoperiod* PRJNA475542 36290169 0.8629 2018/12/6 GSM3184415 ZT6_seedling_1 seedlings Col-0 wild type photoperiod* PRJNA475542 30062084 0.8636 2018/12/6 GSM3204824 cca1lhy_10C_ZT1_Rep1 12-day-old whole seedling tissue Col-0 cca1lhy 10°C_1h PRJNA476778 5182098 0.8223 2019/3/18 GSM3204845 prr7prr9_10C_ZT6_Rep1 12-day-old whole seedling tissue Col-0 prr7prr9 10°C_6h PRJNA476778 28021341 0.7017 2019/3/18 GSM3204849 prr7prr9_22C_ZT6_Rep1 12-day-old whole seedling tissue Col-0 prr7prr9 22°C_6h PRJNA476778 26347731 0.8385 2019/3/18 GSM3204851 prr7prr9_37C_ZT6_Rep1 12-day-old whole seedling tissue Col-0 prr7prr9 37°C_6h PRJNA476778 21574985 0.8687 2019/3/18 GSM3204822 Col-0_10C_ZT1_Rep3 12-day-old whole seedling tissue Col-0 wild type 10°C_1h PRJNA476778 8434871 0.7509 2019/3/18 GSM3204844 Col-0_10C_ZT6_Rep1 12-day-old whole seedling tissue Col-0 wild type 10°C_6h PRJNA476778 24939605 0.741 2019/3/18 GSM3204848 Col-0_22C_ZT6_Rep1 12-day-old whole seedling tissue Col-0 wild type 22°C_6h PRJNA476778 19421500 0.7953 2019/3/18 GSM3204850 Col-0_37C_ZT6_Rep1 12-day-old whole seedling tissue Col-0 wild type 37°C_6h PRJNA476778 20572933 0.8613 2019/3/18 GSM3209218 0day_1 rosette Col-0 wild type SD PRJNA477336 45542220 0.9756 2019/4/19 GSM3209221 2days_1 rosette Col-0 wild type SD_2dLD* PRJNA477336 44506108 0.9788 2019/4/19 GSM3209224 3days_1 rosette Col-0 wild type SD_3dLD* PRJNA477336 44073307 0.9718 2019/4/19 GSM3209227 5days_1 rosette Col-0 wild type SD_5dLD* PRJNA477336 41046783 0.977 2019/4/19 GSM3228382 Control GMUCT Rep1 rosette leaf Col-0 UBQ10 -- PRJNA478205 84246740 0.7173 2018/11/9 GSM3228385 Salt GMUCT Rep1 rosette leaf Col-0 UBQ10 -- PRJNA478205 60124145 0.7199 2018/11/9 GSM3228269 Control mRNA-seq rep1 rosette leaf Col-0 UBQ10 -- PRJNA478206 18396816 0.7275 2018/11/9 GSM3242204 hsl2_rep_2 root tip Col-0 hsl2 -- PRJNA478919 21425524 0.8465 2018/7/5 GSM3242200 Col-0_rep_1 root tip Col-0 wild type -- PRJNA478919 21401420 0.8768 2018/7/5 SRX4337156 agl16-1_4 seedling Col-0 agl16-1 -- PRJNA479441 25171618 0.9597 2019/8/1 SRX4337160 Col-0_4 seedling Col-0 wild type -- PRJNA479441 23682823 0.9584 2019/8/1 GSM3258331 jazQ_rep1 rosette leaf Col-0 jazQ -- PRJNA479861 16352788 0.8949 2018/11/20 GSM3258328 Col-0_rep1 rosette leaf Col-0 wild type -- PRJNA479861 18213230 0.9029 2018/11/20 GSM3262073 Arabidopsis_ein3 eil1_R1 aerial seedling Col-0 ein3 eil1 -- PRJNA480268 17051998 0.8208 2018/9/25 GSM3262069 Arabidopsis_hls1_R1 aerial seedling Col-0 hls1 -- PRJNA480268 14210916 0.9163 2018/9/25 GSM3262075 Arabidopsis_pifq_R1 aerial seedling Col-0 pifq -- PRJNA480268 18864936 0.9328 2018/9/25 GSM3262071 Arabidopsis_pifq ein3 eil1_R1 aerial seedling Col-0 pifq ein3 eil1 -- PRJNA480268 16162468 0.8978 2018/9/25 GSM3262067 Arabidopsis_Col-0_R1 aerial seedling Col-0 wild type -- PRJNA480268 16359424 0.9132 2018/9/25 SRX4383148 Col-0_rep2 seedings Col-0 Wild type -- PRJNA480320 37310618 0.9039 2019/4/23 SRX4383145 dre2-4_rep3 seedings Col-0 dre2 mutant -- PRJNA480320 42228399 0.9014 2019/4/23 GSM3271475 cop1 red rep1 seedlings Col-0 cop1-4 1h red light PRJNA481068 31778476 0.8997 2018/7/16 GSM3271490 phyB c-term deletion red rep1 seedlings Col-0 phyB C-terminal deletion 1h red light PRJNA481068 27062101 0.9184 2018/7/16 GSM3271484 phyB c-term deletion dark rep1 seedlings Col-0 phyB C-terminal deletion dark control PRJNA481068 23300436 0.9173 2018/7/16 GSM3271487 phyB full length red rep1 seedlings Col-0 phyB full length 1h red light PRJNA481068 18309342 0.9092 2018/7/16 GSM3271481 phyB full length dark rep1 seedlings Col-0 phyB full length dark control PRJNA481068 17229728 0.9215 2018/7/16 GSM3271478 spaQ red rep1 seedlings Col-0 spaQ 1h red light PRJNA481068 18386821 0.9116 2018/7/16 GSM3271472 Col-0 red rep1 seedlings Col-0 wild type 1h red light PRJNA481068 21632857 0.9075 2018/7/16 SRX4393096 M10_2 seedlings Col-0 -- Melatonin PRJNA481217 23494599 0.8984 2019/1/15 SRX4393094 M50_1 seedlings Col-0 -- Melatonin PRJNA481217 23450938 0.9029 2019/1/15 SRX4393098 ck_3 seedlings Col-0 -- Mock PRJNA481217 23468667 0.9007 2019/1/15 SRX4393103 S10_1 seedlings Col-0 -- Serotonin PRJNA481217 23414713 0.9023 2019/1/15 SRX4393104 S50_3 seedlings Col-0 -- Serotonin PRJNA481217 24052597 0.8968 2019/1/15 SRX4403054 49SR_3 seedlings Col-0 -- -- PRJNA481647 24096300 0.9066 2019/1/12 SRX4403057 49oe_1 seedlings Col-0 -- -- PRJNA481647 24099912 0.8983 2019/1/12 SRX4403055 col_2 seedlings Col-0 -- -- PRJNA481647 23462486 0.8986 2019/1/12 GSM3290661 Col_DPI_Highlight 8min_Local Leaf_rep1 leaves Col-0 wild type Highlight PRJNA481718 11182294 0.8617 2018/12/26 GSM3290662 Col_DPI_Highlight 8min_Systemic Leaf_rep1 leaves Col-0 wild type Highlight PRJNA481718 14684422 0.8611 2018/12/26 GSM3290657 Col_H2O_Highlight 8min_Local Leaf_rep1 leaves Col-0 wild type Highlight PRJNA481718 14744964 0.8408 2018/12/26 GSM3290658 Col_H2O_Highlight 8min_Systemic Leaf_rep1 leaves Col-0 wild type Highlight PRJNA481718 13920903 0.8578 2018/12/26 GSM3290659 Col_DPI_Control_Local Leaf_rep1 leaves Col-0 wild type Mock PRJNA481718 12986577 0.859 2018/12/26 GSM3290660 Col_DPI_Control_Systemic Leaf_rep1 leaves Col-0 wild type Mock PRJNA481718 14664051 0.8644 2018/12/26 GSM3290655 Col_H2O_Control_Local Leaf_rep1 leaves Col-0 wild type Mock PRJNA481718 15199090 0.8557 2018/12/26 GSM3290656 Col_H2O_Control_Systemic Leaf_rep1 leaves Col-0 wild type Mock PRJNA481718 13766758 0.8547 2018/12/26 GSM3290644 Col_2min_H2O2_seedling_rep1 seedlings Col-0 wild type H2O2 2min PRJNA481719 14534637 0.7974 2018/12/26 GSM3290645 Col_4min_H2O2_seedling_rep1 seedlings Col-0 wild type H2O2 4min PRJNA481719 14620278 0.8253 2018/12/26 GSM3290646 Col_8min_H2O2_seedling_rep1 seedlings Col-0 wild type H2O2 8min PRJNA481719 15379110 0.8068 2018/12/26 GSM3290643 Col_0min_H2O_seedling_rep1 seedlings Col-0 wild type Mock PRJNA481719 16077394 0.8364 2018/12/26 GSM3290619 rbohd_Control_0min_Local Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 12054374 0.9145 2018/12/26 GSM3290620 rbohd_Control_0min_Systemic Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 14054873 0.8974 2018/12/26 GSM3290621 rbohd_Highlight_2min_Local Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 12405581 0.9183 2018/12/26 GSM3290622 rbohd_Highlight_2min_Systemic Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 13084969 0.9103 2018/12/26 GSM3290623 rbohd_Highlight_4min_Local Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 12950978 0.9114 2018/12/26 GSM3290624 rbohd_Highlight_4min_Systemic Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 12637592 0.9125 2018/12/26 GSM3290625 rbohd_Highlight_8min_Local Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 12924188 0.9167 2018/12/26 GSM3290626 rbohd_Highlight_8min_Systemic Leaf_rep_1 leaves Col-0 rbohd mutant -- PRJNA481720 13236269 0.9109 2018/12/26 GSM3290597 Col_Highlight_2min_Local Leaf_rep_1 leaves Col-0 wild type Highlight PRJNA481720 16252758 0.8913 2018/12/26 GSM3290598 Col_Highlight_2min_Systemic Leaf_rep_1 leaves Col-0 wild type Highlight PRJNA481720 19072202 0.8915 2018/12/26 GSM3290599 Col_Highlight_4min_Local Leaf_rep_1 leaves Col-0 wild type Highlight PRJNA481720 16100297 0.9056 2018/12/26 GSM3290600 Col_Highlight_4min_Systemic Leaf_rep_1 leaves Col-0 wild type Highlight PRJNA481720 20397937 0.9017 2018/12/26 GSM3290601 Col_Highlight_8min_Local Leaf_rep_1 leaves Col-0 wild type Highlight PRJNA481720 23657231 0.892 2018/12/26 GSM3290602 Col_Highlight_8min_Systemic Leaf_rep_1 leaves Col-0 wild type Highlight PRJNA481720 20130726 0.8973 2018/12/26 GSM3290595 Col_Control_0min_Local Leaf_rep_1 leaves Col-0 wild type Mock PRJNA481720 16451870 0.9023 2018/12/26 GSM3290596 Col_Control_0min_Systemic Leaf_rep_1 leaves Col-0 wild type Mock PRJNA481720 18783132 0.8962 2018/12/26 SRX4590754 Col0-1 anther Col-0 -- -- PRJNA482567 11395349 0.9022 2018/12/31 SRX4590756 bam3-1 anther Col-0 bam3 -- PRJNA482567 11322470 0.9291 2018/12/31 SRX4466232 frd3_Ctrl_root3 root Col-0 frd3-7 1 microM Zn PRJNA482933 22791323 0.8947 2019/12/31 SRX4466230 frd3_Zn_root2 root Col-0 frd3-7 20 microM Zn PRJNA482933 26000122 0.9115 2019/12/31 SRX4466238 WT_Ctrl_root3 root Col-0 wild type 1 microM Zn PRJNA482933 22730676 0.9041 2019/12/31 SRX4466236 WT_Zn_root2 root Col-0 wild type 20 microM Zn PRJNA482933 23190408 0.9167 2019/12/31 GSM3662017 DIV1_B6_Rep1 root Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 8813499 0.7127 2019/3/15 GSM3662026 HB6_B3_Rep1 root Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 21757420 0.8089 2019/3/15 GSM3311613 C2H2_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 23164226 0.819 2019/3/15 GSM3311614 CDF1_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 25475999 0.8331 2019/3/15 GSM3311589 COL5_B3Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 18570776 0.8472 2019/3/15 GSM3311599 CRF4_B3Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 23861938 0.803 2019/3/15 GSM3311571 EV_B1Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 30715453 0.8385 2019/3/15 GSM3311583 EV_B2Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 22737013 0.804 2019/3/15 GSM3311598 EV_B3Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 18338493 0.8149 2019/3/15 GSM3311628 EV_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 18162915 0.7808 2019/3/15 GSM3311590 GATA17L_B3Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 26530279 0.8171 2019/3/15 GSM3311616 HHO2_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 18940186 0.817 2019/3/15 GSM3311591 HHO3_B3Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 25538900 0.8068 2019/3/15 GSM3311629 NAC4_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 21262541 0.7876 2019/3/15 GSM3311615 ZFP4_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 23496726 0.8204 2019/3/15 GSM3311617 bZIP3_B4Rep1 root protoplasts Col-0 -- Nitrogen, Cycloheximide, Dexamethasone PRJNA483458 20513982 0.8143 2019/3/15 GSM3316336 WT_7DAG_1 Seedlings Col-0 Wild Type -- PRJNA483876 57837872 0.9155 2019/5/24 GSM3316340 hta9hta11_7DAG_1 Seedlings Col-0 hta9hta11 doble mutant -- PRJNA483876 39499783 0.9459 2019/5/24 GSM3316343 hta9hta11_FLAG-HTA9_N_7DAG_1 Seedlings Col-0 hta9hta11_FLAG-HTA9_N -- PRJNA483876 34868445 0.9606 2019/5/24 GSM3316346 hta9hta11_FLAG-HTA9_RR_7DAG_1 Seedlings Col-0 hta9hta11_FLAG-HTA9_RR -- PRJNA483876 35558889 0.9514 2019/5/24 SRX4508502 AtV_RLL1 leaves Col-0 RNAi of AtVOC long-term drought PRJNA484081 23932225 0.8516 2019/9/2 SRX4508526 AtV_R_LD2 leaves Col-0 RNAi of AtVOC short-term drought PRJNA484081 20950025 0.7703 2019/9/2 SRX4508504 WTLL1 leaves Col-0 Wild type long-term drought PRJNA484081 24821051 0.8863 2019/9/2 SRX4508528 WT_LD2 leaves Col-0 Wild type short-term drought PRJNA484081 22080931 0.9006 2019/9/2 SRX4508520 mLEALL1 leaves Col-0 mutant of AtLEA long-term drought PRJNA484081 23898814 0.8815 2019/9/2 SRX4508524 mLEA_LD2 leaves Col-0 mutant of AtLEA short-term drought PRJNA484081 23535402 0.924 2019/9/2 SRX4508514 AtLEALL1 leaves Col-0 over expression of AtLEA long-term drought PRJNA484081 30941620 0.8932 2019/9/2 SRX4508506 AtLEA_LD1 leaves Col-0 over expression of AtLEA short-term drought PRJNA484081 22157221 0.8677 2019/9/2 SRX4508510 AtVOC_LD1 leaves Col-0 over expression of AtVOC short-term drought PRJNA484081 25826217 0.7979 2019/9/2 SRX4508512 BnLEALL1 leaves Col-0 over expression of BnLEA long-term drought PRJNA484081 22902817 0.8641 2019/9/2 SRX4508508 BnLEA_LD1 leaves Col-0 over expression of BnLEA short-term drought PRJNA484081 26638204 0.8656 2019/9/2 SRX4508516 BnVOCLL1 leaves Col-0 over expression of BnVOC long-term drought PRJNA484081 23238666 0.8875 2019/9/2 SRX4508522 BnVOC_LD2 leaves Col-0 over expression of BnVOC short-term drought PRJNA484081 23649536 0.8725 2019/9/2 SRX4500617 AtV_R_D2 silique Col-0 RNAi of AtVOC short-term drought PRJNA484081 23211999 0.8194 2019/8/30 SRX4500605 WT1 silique Col-0 Wild type long-term drought PRJNA484081 24879506 0.8748 2019/8/30 SRX4500615 WT_D2 silique Col-0 Wild type short-term drought PRJNA484081 30132585 0.8475 2019/8/30 SRX4500611 mLEA_D2 silique Col-0 mutant of AtLEA short-term drought PRJNA484081 27906508 0.8482 2019/8/30 SRX4500603 AtLEA_D1 silique Col-0 over expression of AtLEA short-term drought PRJNA484081 20673363 0.8679 2019/8/30 SRX4500619 AtVOC1 silique Col-0 over expression of AtVOC long-term drought PRJNA484081 21286909 0.9044 2019/8/30 SRX4500609 AtVOC_D1 silique Col-0 over expression of AtVOC short-term drought PRJNA484081 21653423 0.8658 2019/8/30 SRX4500601 BnLEA_D1 silique Col-0 over expression of BnLEA short-term drought PRJNA484081 21782804 0.8463 2019/8/30 SRX4500613 BnVOC_D2 silique Col-0 over expression of BnVOC short-term drought PRJNA484081 23203691 0.7669 2019/8/30 GSM3317934 adcp1-1_RNAseq_rep1 leaves Col-0 adcp1-1 mutant -- PRJNA484219 37092755 0.7978 2018/11/15 GSM3317932 Col-0_RNAseq_rep1 leaves Col-0 wild type -- PRJNA484219 29650422 0.8154 2018/11/15 SRX4504629 32OX8_1 seedings Col-0 -- -- PRJNA484330 23670153 0.9016 2019/9/3 SRX4504626 32SRDX1_3 seedings Col-0 -- -- PRJNA484330 23622892 0.9073 2019/9/3 SRX4504625 32SRDX6_1 seedings Col-0 -- -- PRJNA484330 23716067 0.8972 2019/9/3 SRX4504627 col_0_2 seedings Col-0 -- -- PRJNA484330 23983593 0.9276 2019/9/3 SRX4514501 NAC32_OX.8 Fe deficiency_3 seedlings Col-0 NAC32_OX* He deHiciency PRJNA484875 21202306 0.9127 2019/9/7 SRX4514500 nac32 Fe deficiency_3 seedlings Col-0 nac32* He deHiciency PRJNA484875 21593595 0.9101 2019/9/7 SRX4514499 col_0 Fe deficiency_1 seedlings Col-0 wild type He deHiciency PRJNA484875 21569865 0.9099 2019/9/7 SRX4514505 col_0 control_2 seedlings Col-0 wild type control PRJNA484875 21406473 0.9006 2019/9/7 GSM3325568 RNA-LHS-1 seedlings Col-0 Wild type LHS (long heat stress)* PRJNA485260 41297613 0.9343 2020/2/20 GSM3325570 RNA-LHSR12-1 seedlings Col-0 Wild type LHSR12 (long heat stress recovery 12 hours)* PRJNA485260 42064217 0.9443 2020/2/20 GSM3325572 RNA-LHSR84-1 seedlings Col-0 Wild type LHSR84 (long heat stress recovery 84 hours)* PRJNA485260 35989774 0.9517 2020/2/20 GSM3325566 RNA-CTRL-7d-1 seedlings Col-0 Wild type control PRJNA485260 36420063 0.9522 2020/2/20 GSM3325830 Col-0 endosperm 7 DAP rep 1 endosperm Col-0 Col-0 -- PRJNA485348 40369489 0.7838 2018/10/29 GSM3325836 hdg3-1 Col-0 endosperm 7 DAP rep 1 endosperm Col-0 hdg3-1 Col-0 mutant -- PRJNA485348 39822210 0.7783 2018/10/29 GSM3330039 SAP11aywb_exposed_D1 leaf Col-0 SAP11 overexpressed exposed to M. quadrilineatus PRJNA485633 13375743 0.917 2019/9/9 GSM3330043 SAP11mbsp_exposed_E1 leaf Col-0 SAP11 overexpressed exposed to M. quadrilineatus PRJNA485633 12479249 0.9162 2019/9/9 GSM3330047 col0_exposed_H1 leaf Col-0 wild type exposed to M. quadrilineatus PRJNA485633 14558927 0.9009 2019/9/9 SRX4547827 a1-b-1 seedlings Col-0 abcf1* -- PRJNA485670 21203924 0.906 2019/9/13 SRX4547830 a4-b-1 seedlings Col-0 abcf4* -- PRJNA485670 21490237 0.92 2019/9/13 SRX4547824 col-0-1 seedlings Col-0 wild type -- PRJNA485670 21460161 0.9071 2019/9/13 SRX4550681 A3-OE-3-1 seedlings Col-0 ABCF3-OE* -- PRJNA485863 24044217 0.8953 2019/9/14 SRX5240064 a3-a-3 seedlings Col-0 abcf3-a -- PRJNA485863 24111472 0.9306 2019/10/26 SRX4550680 ck4 seedlings Col-0 wild type -- PRJNA485863 24105384 0.9272 2019/9/14 SRX4553473 Col-3AT-1 shoot Col-0 wild type 3AT PRJNA486068 19992218 0.9382 2019/3/26 SRX4553469 Col-AA-2 shoot Col-0 wild type AA PRJNA486068 23291440 0.9298 2019/3/26 SRX4553467 Col-ABA-3 shoot Col-0 wild type ABA PRJNA486068 23106519 0.9374 2019/3/26 SRX4553461 Col-MV-3 shoot Col-0 wild type MV PRJNA486068 23518155 0.9327 2019/3/26 SRX4553459 Col-SA-2 shoot Col-0 wild type SA PRJNA486068 20579307 0.9323 2019/3/26 SRX4553477 Col-UVcont-3 shoot Col-0 wild type UVcont PRJNA486068 23243542 0.9289 2019/3/26 SRX4553465 Col-cont-2 shoot Col-0 wild type cont PRJNA486068 20064912 0.9292 2019/3/26 GSM3335932 WT flg22 Rep1 seedlings Col-0 wild type Hlg22 PRJNA486344 56095009 0.7862 2018/10/8 GSM3348235 Red light treated phyAB rep1 seedlings Col-0 phyAB mutant 1h red light PRJNA486910 28237497 0.8784 2019/8/24 GSM3348233 Red light treated phyB rep1 seedlings Col-0 phyB mutant 1h red light PRJNA486910 20631739 0.8752 2019/8/24 GSM3348229 Red light treated Col rep1 seedlings Col-0 wild type 1h red light PRJNA486910 25124930 0.8815 2019/8/24 GSM3348231 Dard treated Col rep1 seedlings Col-0 wild type darkness PRJNA486910 26613045 0.8688 2019/8/24 GSM3370069 Col-0 Heat AM Rep 1 whole plant Col-0 -- Heat PRJNA488799 27155344 0.8868 2019/2/4 GSM3370073 Col-0 Heat PM Rep 1 whole plant Col-0 -- Heat PRJNA488799 48538597 0.8556 2019/2/4 GSM3371569 mpk8_24h_1 seed Col-0 mpk8 mutant Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25C PRJNA488814 22395685 0.9556 2019/7/28 GSM3371572 mpk8_dry_1 seed Col-0 mpk8 mutant no treatment PRJNA488814 19066740 0.9343 2019/7/28 GSM3371575 tcp14_24h_1 seed Col-0 tcp14 mutant Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25C PRJNA488814 18408982 0.924 2019/7/28 GSM3371578 tcp14_dry_1 seed Col-0 tcp14 mutant no treatment PRJNA488814 22465726 0.9368 2019/7/28 GSM3371563 WT_24h_1 seed Col-0 wild type Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25C PRJNA488814 16847429 0.9458 2019/7/28 GSM3371566 WT_dry_1 seed Col-0 wild type no treatment PRJNA488814 14644924 0.9336 2019/7/28 SRX5006594 col_L3 seed Col-0 wild type -- PRJNA489162 23107015 0.9258 2018/11/14 SRX4641270 Anchorene-2 collet Col-0 -- Anchorene PRJNA489360 84288775 0.8279 2019/1/1 SRX4641272 Mock-3 collet Col-0 -- Mock PRJNA489360 79969376 0.8434 2019/1/1 SRX4641268 NPA-1 collet Col-0 -- NPA PRJNA489360 81842255 0.8678 2019/1/1 SRX4702161 WT-CK1 shoot Col-0 wild type -- PRJNA490074 29780481 0.8477 2019/1/1 SRX4702156 WT-D3 shoot Col-0 wild type -- PRJNA490074 24899211 0.9307 2019/1/1 SRX4702157 WT-N2 shoot Col-0 wild type -- PRJNA490074 27466064 0.9242 2019/1/1 GSM3389890 AGN1HR1 seedlings Col-0 wild type AGN 1h PRJNA490893 24048099 0.9388 2018/9/25 GSM3389896 AGN24HR1 seedlings Col-0 wild type AGN 24h PRJNA490893 29385882 0.9422 2018/9/25 GSM3389893 AGN6HR1 seedlings Col-0 wild type AGN 6h PRJNA490893 29019084 0.9417 2018/9/25 GSM3389881 ACT1HR1 seedlings Col-0 wild type Mock PRJNA490893 22730925 0.9447 2018/9/25 GSM3389887 ACT24HR1 seedlings Col-0 wild type Mock PRJNA490893 21451831 0.9433 2018/9/25 GSM3389884 ACT6HR1 seedlings Col-0 wild type Mock PRJNA490893 25204402 0.9379 2018/9/25 GSM3391611 lst8-1_1 whole plant Col-0 lst8 mutant -- PRJNA491272 16301180 0.9374 2019/5/24 GSM3391614 maktor1g1_1 whole plant Col-0 maktor mutant -- PRJNA491272 16059831 0.9369 2019/5/24 GSM3391617 maktor1g1maktor5g_1 whole plant Col-0 maktor mutant -- PRJNA491272 16216875 0.9386 2019/5/24 GSM3391608 Col0_1 whole plant Col-0 wild type -- PRJNA491272 15629078 0.9331 2019/5/24 GSM3391623 yak1lst8-1_1 whole plant Col-0 yak1 lst8 mutant -- PRJNA491272 17882608 0.9358 2019/5/24 GSM3391620 yak1_1 whole plant Col-0 yak1 mutant -- PRJNA491272 14789343 0.9347 2019/5/24 SRX4734053 ILP1_rep2 seeding Col-0 ilp1-1* -- PRJNA492822 18543428 0.9548 2019/9/1 SRX4734051 NTR1_rep2 seeding Col-0 ntr1-1* -- PRJNA492822 16049626 0.9532 2019/9/1 SRX4734055 Col-0_rep2 seeding Col-0 wild type -- PRJNA492822 20157345 0.9347 2019/9/1 SRX4733741 AtEC8_R2 root Col-0 -- VOC PRJNA492842 25917806 0.8413 2018/9/25 SRX4733731 AtTSA_S2 shoot Col-0 -- Mock PRJNA492842 20285112 0.8816 2018/9/25 SRX4733729 AtEC8_S2 shoot Col-0 -- VOC PRJNA492842 32068845 0.8735 2018/9/25 GSM3400581 Col_0_4h_rep1 leaves Col-0 wild type wounding 4h PRJNA493021 42575355 0.7307 2018/12/27 GSM3402479 pVC::H1 pollen RNA-seq rep1 pollen Col-0 pVC::H1.1-mRFP -- PRJNA493255 58146800 0.7916 2019/5/29 GSM3402476 WT pollen RNA-seq rep1 pollen Col-0 wild type -- PRJNA493255 65757351 0.7847 2019/5/29 SRX4778924 A5-2 Leaves Col-0 -- -- PRJNA493902 25704538 0.9103 2019/10/1 SRX4778918 A2-2 Leaves Col-0 -- Pst DC3000 0hpi* PRJNA493902 25902956 0.9098 2019/10/1 SRX4778922 A4-2 Leaves Col-0 -- Pst DC3000 30hpi* PRJNA493902 24328198 0.9113 2019/10/1 SRX4778920 A3-2 Leaves Col-0 -- Pst DC3000 6hpi* PRJNA493902 23299125 0.9122 2019/10/1 SRX4778934 B5-2 Leaves Col-0 -- Pst DC3000* PRJNA493902 26889351 0.913 2019/10/1 SRX4778928 B2-2 Leaves Col-0 -- cold 10h and Pst DC3000 0hpi* PRJNA493902 21099431 0.9128 2019/10/1 SRX4778932 B4-2 Leaves Col-0 -- cold 10h and Pst DC3000 30hpi* PRJNA493902 25745265 0.9095 2019/10/1 SRX4778930 B3-2 Leaves Col-0 -- cold 10h and Pst DC3000 6hpi* PRJNA493902 23042809 0.9112 2019/10/1 SRX4778926 B1-2 Leaves Col-0 -- cold 10h* PRJNA493902 28139165 0.9123 2019/10/1 GSM3408065 17ab_rep1 10-days Seedlings Col-0 mutant 17ab -- PRJNA494061 13015082 0.9251 2019/4/18 GSM3408062 WT_rep1 10-days Seedlings Col-0 wild type -- PRJNA494061 13012117 0.9195 2019/4/18 GSM3408856 inflorescence_poly(A)+ rep2 inflorescence Col-0 Wild type -- PRJNA494179 49145012 0.8735 2018/12/26 GSM3408859 leaf_poly(A)+ rep2 leaves Col-0 Wild type -- PRJNA494179 52299856 0.8753 2018/12/26 GSM3408813 ABA_2h_poly(A)+ rep2 seedlings Col-0 Wild type ABA 2h PRJNA494179 50711222 0.7164 2018/12/26 GSM3408818 ABA_4h_poly(A)+ rep2 seedlings Col-0 Wild type ABA 4h PRJNA494179 49354731 0.7886 2018/12/26 GSM3408823 ABA_6h_poly(A)+ rep2 seedlings Col-0 Wild type ABA 6h PRJNA494179 45573428 0.7967 2018/12/26 GSM3408828 ABA_8h_poly(A)+ rep2 seedlings Col-0 Wild type ABA 8h PRJNA494179 50916079 0.8002 2018/12/26 GSM3408808 ABA_0h_poly(A)+ rep2 seedlings Col-0 Wild type Mock PRJNA494179 50398645 0.7514 2018/12/26 GSM3408800 cold_0d_poly(A)+ rep2 seedlings Col-0 Wild type Mock PRJNA494179 52388527 0.8163 2018/12/26 GSM3408831 drought_0h_poly(A)+ rep2 seedlings Col-0 Wild type Mock PRJNA494179 43304945 0.8348 2018/12/26 GSM3408803 cold_20d_poly(A)+ rep2 seedlings Col-0 Wild type cold 20d PRJNA494179 47297995 0.8203 2018/12/26 GSM3408834 drought_2h_poly(A)+ rep2 seedlings Col-0 Wild type drought 2h PRJNA494179 37346192 0.8762 2018/12/26 GSM3408837 drought_4h_poly(A)+ rep2 seedlings Col-0 Wild type drought 4h PRJNA494179 51957261 0.8608 2018/12/26 GSM3408840 drought_6h_poly(A)+ rep2 seedlings Col-0 Wild type drought 6h PRJNA494179 46207467 0.8619 2018/12/26 GSM3408843 drought_8h_poly(A)+ rep2 seedlings Col-0 Wild type drought 8h PRJNA494179 45948908 0.8641 2018/12/26 GSM3414843 eds4 mutant rep 1 2weeks seedlings Col-0 eds4 -/- -- PRJNA494398 22647547 0.9162 2020/1/2 GSM3414848 eds4 total rep 1 2weeks seedlings Col-0 eds4 -/- -- PRJNA494398 16668450 0.8958 2020/1/2 GSM3414839 wt Col-0 rep 1 2weeks seedlings Col-0 wild type -- PRJNA494398 25486480 0.9235 2020/1/2 GSM3414846 wt total rep 1 2weeks seedlings Col-0 wild type -- PRJNA494398 16737451 0.8962 2020/1/2 GSM3416966 Aerated Bio Rep1 shoots Col-0 -- aerated PRJNA494693 56690298 0.8903 2019/3/21 GSM3430694 Second Aerated Bio Rep1 shoots Col-0 -- aerated PRJNA494693 26667212 0.7944 2019/3/21 GSM3430686 Second Micropore Bio Rep1 shoots Col-0 -- micropore filter PRJNA494693 35643444 0.8496 2019/3/21 GSM3416967 Non Aerated Bio Rep1 shoots Col-0 -- non-aerated PRJNA494693 53144616 0.8904 2019/3/21 GSM3430690 Second Non-Aerated Bio Rep1 shoots Col-0 -- non-aerated PRJNA494693 36594656 0.8868 2019/3/21 SRX4803526 Col-0 ATP replicate 3 seedlings Col-0 Col-0 ATP PRJNA494862 21112511 0.8979 2019/1/8 SRX4803529 Col-0 mock replicate 3 seedlings Col-0 Col-0 Mock PRJNA494862 19032450 0.8959 2019/1/8 SRX4803500 OxP2K1 ATP replicate 1 seedlings Col-0 OxP2K1 500 uM ATP PRJNA494862 25017440 0.8505 2019/1/8 SRX4803499 OxP2K1 mock replicate 6 seedlings Col-0 OxP2K1 mock PRJNA494862 25994983 0.8855 2019/1/8 SRX4803509 coi1 ATP replicate 4 seedlings Col-0 coi1-30 500 uM ATP PRJNA494862 22837474 0.8699 2019/1/8 SRX4803546 coi1 mock replicate 1 seedlings Col-0 coi1-30 mock PRJNA494862 26637086 0.8676 2019/1/8 SRX4803503 dorn1 ATP replicate 4 seedlings Col-0 dorn1-3 500 uM ATP PRJNA494862 33239612 0.8871 2019/1/8 SRX4803506 dorn1 mock replicate 4 seedlings Col-0 dorn1-3 mock PRJNA494862 23167190 0.888 2019/1/8 SRX4803552 ein2 ATP replicate 3 seedlings Col-0 ein2-1 500 uM ATP PRJNA494862 22673953 0.8949 2019/1/8 SRX4803513 ein2 mock replicate 2 seedlings Col-0 ein2-1 mock PRJNA494862 21196173 0.8909 2019/1/8 SRX4803521 npr1 ATP replicate 6 seedlings Col-0 npr1-3 500 uM ATP PRJNA494862 26861884 0.8945 2019/1/8 SRX4803519 npr1 mock replicate 6 seedlings Col-0 npr1-3 mock PRJNA494862 19893126 0.8949 2019/1/8 GSM3423810 1C-1 embryo Col-0 -- -- PRJNA495335 30952209 0.794 2019/5/13 GSM3423813 32C-1 embryo Col-0 -- -- PRJNA495335 28617212 0.7633 2019/5/13 GSM3426997 mRNA WT na?ve + triggered rep 1 leaves Col-0 Wild type excess-light PRJNA495850 33054919 0.9209 2018/11/28 GSM3427003 mRNA WT primed + triggered rep 1 leaves Col-0 Wild type excess-light* PRJNA495850 23980416 0.8854 2018/11/28 GSM3433651 H07C1 seedlings Col-0 hda9-1 mutant Mock PRJNA497220 48974401 0.92 2019/1/2 GSM3433633 H48C1 seedlings Col-0 hda9-1 mutant Mock PRJNA497220 48876624 0.9263 2019/1/2 GSM3433660 H07HT1 seedlings Col-0 hda9-1 mutant heat27 PRJNA497220 58099516 0.9227 2019/1/2 GSM3433642 H48HT1 seedlings Col-0 hda9-1 mutant heat27 PRJNA497220 41515476 0.8812 2019/1/2 GSM3433648 P07C1 seedlings Col-0 pif4-2 mutant Mock PRJNA497220 57075652 0.9056 2019/1/2 GSM3433630 P48C1 seedlings Col-0 pif4-2 mutant Mock PRJNA497220 56925065 0.9166 2019/1/2 GSM3433657 P07HT1 seedlings Col-0 pif4-2 mutant heat27 PRJNA497220 57251792 0.9143 2019/1/2 GSM3433639 P48HT1 seedlings Col-0 pif4-2 mutant heat27 PRJNA497220 50923303 0.917 2019/1/2 GSM3433627 C48C1 seedlings Col-0 wild type Mock PRJNA497220 58616925 0.89 2019/1/2 GSM3433654 C07HT1 seedlings Col-0 wild type heat27 PRJNA497220 38148601 0.7338 2019/1/2 GSM3433636 C48HT1 seedlings Col-0 wild type heat27 PRJNA497220 34707108 0.8558 2019/1/2 SRX5413164 crwn1_RNA_seq_rep1 leaf Col-0 crwn1 -- PRJNA497671 20686674 0.8623 2019/4/11 SRX5413162 WT_RNA_seq_rep2 leaf Col-0 wild type -- PRJNA497671 15701841 0.8722 2019/4/11 GSM3443225 hda9-r2 7-day-old whole seedling Col-0 hda9 SALK_007123 -- PRJNA498071 17536705 0.9023 2019/5/16 GSM3443223 hda9-hos15-r2 7-day-old whole seedling Col-0 hda9 SALK_007123, hos15-2 SALK_064435 -- PRJNA498071 19912543 0.912 2019/5/16 GSM3443227 hos15-r2 7-day-old whole seedling Col-0 hos15-2 SALK_064435 -- PRJNA498071 17632237 0.9218 2019/5/16 GSM3443229 pwr-r2 7-day-old whole seedling Col-0 pwr SALK_071811C -- PRJNA498071 18299608 0.9144 2019/5/16 GSM3443221 Col-r2 7-day-old whole seedling Col-0 wild type -- PRJNA498071 18530232 0.8882 2019/5/16 GSM3443231 B2 Rep 2 leaves Col-0 -- Isoprene emitting PRJNA498076 51339943 0.9229 2019/5/16 GSM3443234 EV-B3 Rep 2 leaves Col-0 -- Non-emitting PRJNA498076 41168546 0.9132 2019/5/16 SRX4941731 ccrE4 Etiolated Cotyledon Col-0 ccr2* -- PRJNA498324 8656525 0.782 2019/4/22 SRX4941715 WTE2 Etiolated Cotyledon Col-0 wild type -- PRJNA498324 9108121 0.7837 2019/4/22 SRX4941723 ccr2L2 Leaf Col-0 ccr2* -- PRJNA498324 9269991 0.9402 2019/4/22 SRX4941719 WTL4 Leaf Col-0 wild type -- PRJNA498324 11552131 0.9249 2019/4/22 GSM3475784 Col-0 RNA-Seq1 Whole seedlings Col-0 wild type 2h 25uM dexamethasone PRJNA505705 17381629 0.8995 2019/11/12 GSM3475790 Col-0 TSA RNA-Seq1 Whole seedlings Col-0 wild type 2h 25uM dexamethasone,1uM trichostatin PRJNA505705 21091545 0.8935 2019/11/12 SRX5024976 Zn3-4 seedlings Col-0 -- 3d Zn2+ and recovery 3d* PRJNA505965 21492935 0.912 2019/7/31 SRX5024975 Zn-1 seedlings Col-0 -- 3d Zn2+* PRJNA505965 21503359 0.9177 2019/7/31 SRX5024966 NP3-2 seedlings Col-0 -- 3d nanoparticles and recovery 3d* PRJNA505965 21471743 0.9182 2019/7/31 SRX5024968 NP-2 seedlings Col-0 -- 3d nanoparticles* PRJNA505965 21540660 0.9261 2019/7/31 SRX5024970 C-4 seedlings Col-0 -- control PRJNA505965 21474852 0.9217 2019/7/31 SRX5026096 A3-4 seedlings Col-0 MYB70-OX* -- PRJNA506033 21226829 0.9063 2019/8/31 SRX5026098 b-1 seedlings Col-0 myb70* -- PRJNA506033 21216955 0.9107 2019/8/31 SRX5026097 ck-4 seedlings Col-0 wild type -- PRJNA506033 21500459 0.9141 2019/8/31 GSM3484754 Root RNA seq Lib 1 root Col-0 expressing INTACT -- PRJNA506260 41266818 0.9066 2018/12/24 GSM3490689 WT_rep1 root Col-0 wild type -- PRJNA507252 189337914 0.8427 2019/2/6 SRX5070539 PFOA replicate 2 Rosette leaf Col-0 -- PHOA 100 um PRJNA507283 18634808 0.9078 2019/12/25 SRX5070538 PFOS replicate 3 Rosette leaf Col-0 -- PHOS 100 um PRJNA507283 18108820 0.9159 2019/12/25 SRX5070543 Control replicate 1 Rosette leaf Col-0 -- control line PRJNA507283 19666706 0.8983 2019/12/25 GSM3498720 arp6-1_R1 seedlings Col-0 arp6-1 -- PRJNA507972 21760316 0.9353 2019/6/21 GSM3498724 arp6-1,mbd9-3_R1 seedlings Col-0 arp6-1,mbd9-3 -- PRJNA507972 25919627 0.9355 2019/6/21 GSM3498716 mbd9-3_R1 seedlings Col-0 mbd9-3 -- PRJNA507972 20195914 0.9291 2019/6/21 GSM3498712 Columbia-0_R1 seedlings Col-0 wild type -- PRJNA507972 24741530 0.9314 2019/6/21 GSM3499773 dgat1-1 12DAF rep1 Seed Col-0 dgat1-1 -- PRJNA508214 32298522 0.7004 2019/8/24 GSM3499767 WT 16DAF rep1 Seed Col-0 wild type -- PRJNA508214 32419281 0.7623 2019/8/24 GSM3504391 WT C1 seedlings Col-0 wild type Mock PRJNA508784 24859877 0.898 2018/12/13 GSM3504394 WT V1 seedlings Col-0 wild type vernalized 4 week PRJNA508784 25093213 0.9464 2018/12/13 SRX5130544 oxs2_2 leaf Col-0 oxs2 -- PRJNA509371 12130131 0.9496 2020/1/11 SRX5130546 WT_3 leaf Col-0 wild type -- PRJNA509371 12298899 0.9505 2020/1/11 SRX6794798 Cool-L1-T1 rosettes Col-0 -- Control PRJNA509437 38600589 0.7461 2019/9/4 GSM3511858 WT rep1 Root Col-0 Wild type Protoplasted PRJNA509920 261013034 0.7763 2019/9/18 GSM3511863 protoplasted rep1 Root Col-0 Wild type Protoplasted PRJNA509920 21420812 0.9516 2019/3/26 GSM3511861 unprotoplasted rep1 Root Col-0 Wild type Unprotoplasted PRJNA509920 15298551 0.9177 2019/3/26 GSM3516770 nerd-1 rep1 14 day-old seedlings Col-0 nerd-1 -- PRJNA510312 79300832 0.8382 2019/6/5 GSM3516772 nerd-1+T rep1 14 day-old seedlings Col-0 nerd-1+T -- PRJNA510312 70075220 0.8321 2019/6/5 GSM3516768 WT rep1 14 day-old seedlings Col-0 wild type -- PRJNA510312 66494670 0.8329 2019/6/5 SRX5167930 bbx30bbx31_2 seedlings Col-0 -- -- PRJNA510885 31712794 0.9103 2019/1/30 SRX5167932 col_1 seedlings Col-0 -- -- PRJNA510885 19909745 0.9098 2019/1/30 GSM3526278 B_1 seedling Col-0 bli-1-/- -- PRJNA511129 35576779 0.8942 2019/11/1 GSM3526281 Ba_1 seedling Col-0 bli-1-/-ire1a-/- -- PRJNA511129 38235893 0.8906 2019/11/1 GSM3526284 Bb_1 seedling Col-0 bli-1-/-ire1b-/- -- PRJNA511129 22610179 0.8929 2019/11/1 GSM3526275 WT_1 seedling Col-0 wild type -- PRJNA511129 22134863 0.9012 2019/11/1 GSM3529057 s2lb_rep1 seedling Col-0 pSDG2:myc-SDG2 -- PRJNA511595 43237822 0.8806 2019/5/5 GSM3529055 WT_rep1 seedling Col-0 wild type -- PRJNA511595 40051896 0.8705 2019/5/5 SRX5187275 myc234_1h_H_R1 apical part Col-0 myc234 1 (h) aHter high R/HR* PRJNA512107 6627535 0.7179 2019/12/31 SRX5187294 myc234_49h_H_R4 apical part Col-0 myc234 49 (h) aHter high R/HR* PRJNA512107 5946604 0.8001 2019/12/31 SRX5187292 myc234_49h_L_R2 apical part Col-0 myc234 49 (h) aHter low R/HR* PRJNA512107 5025020 0.7856 2019/12/31 SRX5187274 Col_49h_H_R4 apical part Col-0 wild type 49 (h) aHter high R/HR* PRJNA512107 5035309 0.7792 2019/12/31 SRX5187271 Col_49h_L_R1 apical part Col-0 wild type 49 (h) aHter low R/HR* PRJNA512107 6857724 0.7626 2019/12/31 SRX5225109 glk_0h_replicate 2 whole plant Col-0 glk 0h ABA PRJNA513154 7065674 0.9461 2019/1/8 SRX5225114 glk_1h_replicate 2 whole plant Col-0 glk 1h ABA PRJNA513154 7004675 0.9325 2019/1/7 SRX5225112 glk_3h_replicate 1 whole plant Col-0 glk 3h ABA PRJNA513154 10282813 0.9161 2019/1/8 SRX5225120 pyl_0h_replicate 2 whole plant Col-0 pyl 0h ABA PRJNA513154 17094022 0.8983 2019/1/8 SRX5225118 pyl_3h_replicate 1 whole plant Col-0 pyl 3h ABA PRJNA513154 15515866 0.8935 2019/1/8 SRX5225128 wt_0h_replicate 2 whole plant Col-0 wild type 0h ABA PRJNA513154 7859205 0.9327 2019/1/7 SRX5225125 wt_1h_replicate 2 whole plant Col-0 wild type 1h ABA PRJNA513154 7157380 0.9473 2019/1/7 SRX5225122 wt_3h_replicate 2 whole plant Col-0 wild type 3h ABA PRJNA513154 7304847 0.948 2019/1/7 SRX5237480 mRNA-seq_Arabidopsis thaliana_0h_replicate 1 shoot Col-0 -- 0h_21°C_mock PRJNA513856 31017386 0.9321 2019/12/23 SRX5237474 mRNA-seq_Arabidopsis thaliana_1h 21C GA_replicate 3 shoot Col-0 -- 1h_21°C_100 μM gibberellin PRJNA513856 14802609 0.9327 2019/12/23 SRX5237476 mRNA-seq_Arabidopsis thaliana_1h 21C mock_replicate 2 shoot Col-0 -- 1h_21°C_mock PRJNA513856 25086535 0.9328 2019/12/23 SRX5237457 mRNA-seq_Arabidopsis thaliana_1h 4C GA_replicate 3 shoot Col-0 -- 1h_4°C_100 μM gibberellin PRJNA513856 19781872 0.9313 2019/12/23 SRX5237461 mRNA-seq_Arabidopsis thaliana_1h 4C mock_replicate 2 shoot Col-0 -- 1h_4°C_mock PRJNA513856 29288786 0.9374 2019/12/23 SRX5237453 mRNA-seq_Arabidopsis thaliana_2h 21C GA_replicate 1 shoot Col-0 -- 2h_21°C_100 μM gibberellin PRJNA513856 19523179 0.9352 2019/12/23 SRX5237455 mRNA-seq_Arabidopsis thaliana_2h 21C mock_replicate 2 shoot Col-0 -- 2h_21°C_mock PRJNA513856 20570648 0.9333 2019/12/23 SRX5237471 mRNA-seq_Arabidopsis thaliana_2h 4C GA_replicate 3 shoot Col-0 -- 2h_4°C_100 μM gibberellin PRJNA513856 22659160 0.9301 2019/12/23 SRX5237466 mRNA-seq_Arabidopsis thaliana_2h 4C mock_replicate 3 shoot Col-0 -- 2h_4°C_mock PRJNA513856 22263124 0.9349 2019/12/23 SRX5237451 mRNA-seq_Arabidopsis thaliana_4h 21C GA_replicate 1 shoot Col-0 -- 4h_21°C_100 μM gibberellin PRJNA513856 24589953 0.9324 2019/12/23 SRX5237463 mRNA-seq_Arabidopsis thaliana_4h 21C mock_replicate 3 shoot Col-0 -- 4h_21°C_mock PRJNA513856 21239581 0.9344 2019/12/23 SRX5237446 mRNA-seq_Arabidopsis thaliana_4h 4C GA_replicate 3 shoot Col-0 -- 4h_4°C_100 μM gibberellin PRJNA513856 28848071 0.9325 2019/12/23 SRX5237445 mRNA-seq_Arabidopsis thaliana_4h 4C mock_replicate 1 shoot Col-0 -- 4h_4°C_mock PRJNA513856 25402632 0.9314 2019/12/23 GSM3559379 BnA9::BnMAGL8.1 Replicate 1 flower buds Col-0 BnA9 -- PRJNA514309 7186576 0.9356 2019/4/22 GSM3559382 WT Replicate 1 flower buds Col-0 wild type -- PRJNA514309 7797113 0.9435 2019/4/22 SRX5244066 cat2 biological replicate 4 Rosette leaf Col-0 cat2 -- PRJNA514839 11652937 0.9396 2020/2/11 SRX5244064 cat2 gsnor1-3 biological replicate 4 Rosette leaf Col-0 cat2 gsnor1-3 -- PRJNA514839 11060366 0.9445 2020/2/11 SRX5244068 gsnor1-3 biological replicate 4 Rosette leaf Col-0 gsnor1-3 -- PRJNA514839 11485596 0.9381 2020/2/11 SRX5244067 Col-0 biological replicate 4 Rosette leaf Col-0 wild type -- PRJNA514839 11282233 0.9444 2020/2/11 SRX5250637 WT_a2 leaf Col-0 wild type -- PRJNA515221 29974773 0.906 2019/9/30 GSM3566867 RNAseq_T2_22aa_SunTag_NtDRMcd_g4_10_g18_2_minus_rep1 leaves Col-0 22aa_SunTag_NtDRMcd_g4_10_g18_minus -- PRJNA515610 15566341 0.8225 2019/1/28 GSM3566829 RNAseq_T2_22aa_SunTag_VP64_g4_g17_1_rep1 leaves Col-0 22aa_SunTag_VP64_g4_g17 -- PRJNA515610 15959136 0.9005 2019/1/28 GSM3566832 RNAseq_T2_22aa_SunTag_VP64_g4_g17_2_rep1 leaves Col-0 22aa_SunTag_VP64_g4_g17 -- PRJNA515610 17955783 0.9063 2019/1/28 GSM3566836 RNAseq_T2_22aa_SunTag_VP64_g4_g17_3_rep1 leaves Col-0 22aa_SunTag_VP64_g4_g17 -- PRJNA515610 17595875 0.9148 2019/1/28 GSM3566822 RNAseq_T2_22aa_SunTag_VP64_nog_1_rep1 leaves Col-0 22aa_SunTag_VP64_nog -- PRJNA515610 18330345 0.9129 2019/1/28 GSM3566852 RNAseq_T2_SunTag_VP64_EVD_10_rep1 leaves Col-0 SunTag_VP64_EVD -- PRJNA515610 15965708 0.8634 2019/1/28 GSM3566846 RNAseq_T2_SunTag_VP64_EVD_3_rep1 leaves Col-0 SunTag_VP64_EVD -- PRJNA515610 16381150 0.8717 2019/1/28 GSM3566849 RNAseq_T2_SunTag_VP64_EVD_9_rep1 leaves Col-0 SunTag_VP64_EVD -- PRJNA515610 11791241 0.8708 2019/1/28 GSM3566815 RNAseq_T2_SunTag_VP64_g4_3_rep1 leaves Col-0 SunTag_VP64_g4 -- PRJNA515610 15345501 0.9021 2019/1/28 GSM3566801 RNAseq_T2_SunTag_VP64_nog_2_for_g4_rep1 leaves Col-0 SunTag_VP64_nog -- PRJNA515610 15653280 0.9078 2019/1/28 GSM3573045 MeJA1 whole plant Col-0 -- MeJA PRJNA515943 40749450 0.942 2019/1/28 GSM3573039 Mock1 whole plant Col-0 -- Mock PRJNA515943 37598165 0.9457 2019/1/28 SRX5312862 ANAC017OE1-rep1 shoot Col-0 ANAC017OE1 -- PRJNA517774 23210977 0.7872 2019/3/26 SRX5312865 ANAC017OE2-rep1 shoot Col-0 ANAC017OE2 -- PRJNA517774 20769851 0.786 2019/3/26 SRX5312868 ANAC017OE3-rep1 shoot Col-0 ANAC017OE3 -- PRJNA517774 18592147 0.7823 2019/3/26 SRX5312888 ANAC017TMOE1-rep3 shoot Col-0 ANAC017TMOE1 -- PRJNA517774 23509947 0.7718 2019/3/26 SRX5312882 ANAC017TMOE2-rep2 shoot Col-0 ANAC017TMOE2 -- PRJNA517774 26643458 0.7711 2019/3/26 SRX5312884 anac017-TM-cont-rep2 shoot Col-0 anac017-TM -- PRJNA517774 23356747 0.9099 2019/3/26 SRX5312860 anac017KO-rep1 shoot Col-0 anac017KO -- PRJNA517774 17556408 0.9281 2019/3/26 SRX5312878 rao2-1EMS-rep1 shoot Col-0 rao2-1EMS -- PRJNA517774 18002840 0.921 2019/3/26 SRX5312872 Col-0-rep3 shoot Col-0 wild type -- PRJNA517774 13299607 0.7521 2019/3/26 SRX5312870 Col-0_mut-rep2 shoot Col-0 wild type -- PRJNA517774 16435123 0.9222 2019/3/26 GSM3596616 G2 Rep1 10day seedling Col-0 wild type GR244DO_2 hours PRJNA521623 30124846 0.9342 2020/3/16 GSM3596619 G4 Rep1 10day seedling Col-0 wild type GR244DO_4 hours PRJNA521623 32661640 0.9216 2020/3/16 GSM3596622 M0 Rep1 10day seedling Col-0 wild type solvent_0 hours (start point) PRJNA521623 31723223 0.9374 2020/3/16 GSM3596625 M2 Rep1 10day seedling Col-0 wild type solvent_2 hours PRJNA521623 30777241 0.9272 2020/3/16 GSM3596628 M4 Rep1 10day seedling Col-0 wild type solvent_4 hours PRJNA521623 33178187 0.9178 2020/3/16 GSM3605155 Wild type seedlings,50 μM JA treatment for 1 h_1 6day seedlings Col-0 Wild type JA_1h PRJNA523174 37418085 0.9434 2019/11/8 GSM3605160 Wild type seedlings,50 μM JA treatment for 3 h_1 6day seedlings Col-0 Wild type JA_3h PRJNA523174 36238746 0.9398 2019/11/8 GSM3605150 Wild type seedlings, Control_1 6day seedlings Col-0 Wild type untreated PRJNA523174 37768361 0.9447 2019/11/8 GSM3605170 Mutant seedlings, 50 μM JA treatment for 1 h_1 6day seedlings Col-0 ecap-2 mutant JA_1h PRJNA523174 42231662 0.9473 2019/11/8 GSM3605175 Mutant seedlings, 50 μM JA treatment for 3 h_1 6day seedlings Col-0 ecap-2 mutant JA_3h PRJNA523174 38585642 0.9445 2019/11/8 GSM3605165 Mutant seedlings, 50 μM JA treatment for 0 h_1 6day seedlings Col-0 ecap-2 mutant untreated PRJNA523174 36356537 0.9278 2019/11/8 GSM3612828 clf0Rt1 root Col-0 clf iron deHicient PRJNA523248 31782015 0.8535 2019/5/16 GSM3612825 clf50Rt1 root Col-0 clf iron suHHicient PRJNA523248 34422949 0.8601 2019/5/16 GSM3612822 Col00Rt1 root Col-0 wild type iron deHicient PRJNA523248 27102227 0.8848 2019/5/16 GSM3612819 Col50Rt 1 root Col-0 wild type iron suHHicient PRJNA523248 26264889 0.8654 2019/5/16 GSM3620625 mRNAseq rep1 seedlings Col-0 -- -- PRJNA524135 30157053 0.8063 2019/6/4 GSM3620641 polysome-seq rep1 seedlings Col-0 -- -- PRJNA524135 31251640 0.7924 2019/6/4 GSM3633925 H89C11-7_rep1 complete seedling Col-0 H89C11-7 transgenic line -- PRJNA524697 15420866 0.8826 2019/12/23 GSM3633928 H89C23-10_rep1 complete seedling Col-0 H89C23-10 transgenic line -- PRJNA524697 26168938 0.8839 2019/12/23 GSM3633931 H89C4-7_rep1 complete seedling Col-0 H89C4-7 transgenic line -- PRJNA524697 19511085 0.878 2019/12/23 GSM3633934 NEET10-10_rep1 complete seedling Col-0 NEET10-10 transgenic line -- PRJNA524697 20087283 0.891 2019/12/23 GSM3633937 NEET11-9_rep1 complete seedling Col-0 NEET11-9 transgenic line -- PRJNA524697 25525247 0.8791 2019/12/23 GSM3633940 NEET5-4_rep1 complete seedling Col-0 NEET5-4 transgenic line -- PRJNA524697 23480466 0.8839 2019/12/23 GSM3633922 Col_rep1 complete seedling Col-0 wild type -- PRJNA524697 18113009 0.8953 2019/12/23 GSM3636165 ein2/jar1_24h_rep 1 seedling root Col-0 ein2-1/jar1-1 untreated plate PRJNA524935 58595848 0.9077 2020/1/8 GSM3636167 ein2/jar1_48h_rep 1 seedling root Col-0 ein2-1/jar1-1 untreated plate PRJNA524935 69403035 0.9007 2020/1/8 GSM3636157 Col-0_24h_rep 1 seedling root Col-0 wild type untreated plate PRJNA524935 62353450 0.9059 2020/1/8 GSM3636159 Col-0_48h_rep 1 seedling root Col-0 wild type untreated plate PRJNA524935 65596086 0.8895 2020/1/8 SRX5453451 CK-OE2-1 -- Col-0 OE5 control PRJNA525176 24706116 0.8363 2019/3/2 SRX5453444 T-OE2-2 -- Col-0 OE5 salt stress PRJNA525176 24309637 0.8271 2019/3/2 SRX5453448 CK-WT-1 -- Col-0 wild type control PRJNA525176 33888513 0.785 2019/3/2 SRX5453446 T-WT-3 -- Col-0 wild type salt stress PRJNA525176 28056335 0.8452 2019/3/2 GSM3639345 pkl-1_0h_rep1 seedlings Col-0 pk1-1 4 C Hor 0 h PRJNA525452 15592308 0.8998 2019/3/6 GSM3639351 pkl-1_24h_rep1 seedlings Col-0 pk1-1 4 C Hor 24 h PRJNA525452 19410516 0.8898 2019/3/6 GSM3639348 pkl-1_3h_rep1 seedlings Col-0 pk1-1 4 C Hor 3 h PRJNA525452 13762854 0.902 2019/3/6 GSM3639336 Col-0_0h_rep 1 seedlings Col-0 wild type Mock PRJNA525452 18576537 0.9287 2019/3/6 GSM3639342 Col-0_24h_rep1 seedlings Col-0 wild type cold 24h PRJNA525452 9797234 0.934 2019/3/6 GSM3639339 Col-0_3h_rep1 seedlings Col-0 wild type cold 3h PRJNA525452 14901747 0.9228 2019/3/6 GSM3656400 Treatment B_1 seedling Col-0 -- 3'-butyl ABA PRJNA525779 11723746 0.92 2020/3/2 GSM3656397 Treatment P_1 seedling Col-0 -- 3'-propyl ABA PRJNA525779 11274940 0.9283 2020/3/2 GSM3656394 Treatment A_1 seedling Col-0 -- ABA PRJNA525779 13204849 0.9262 2020/3/2 GSM3656391 Control_1 seedling Col-0 -- DMSO PRJNA525779 12486507 0.9335 2020/3/2 GSM3656471 pip5k1 pip5k2_Ec_2dpi_rep1 leaves Col-0 pip5k1 pip5k2 mutant Erysiphe cichoracearum 2dpi PRJNA525816 11676944 0.8246 2020/3/10 GSM3656477 pip5k1 pip5k2_Ec_5dpi_rep1 leaves Col-0 pip5k1 pip5k2 mutant Erysiphe cichoracearum 5dpi PRJNA525816 12970495 0.8108 2020/3/10 GSM3656483 pip5k1 pip5k2_Ec_7dpi_rep1 leaves Col-0 pip5k1 pip5k2 mutant Erysiphe cichoracearum 7dpi PRJNA525816 12534343 0.8047 2020/3/10 GSM3656489 pip5k1 pip5k2_Mock_2d_rep1 leaves Col-0 pip5k1 pip5k2 mutant none 2d PRJNA525816 11790344 0.8034 2020/3/10 GSM3656495 pip5k1 pip5k2_Mock_5d_rep1 leaves Col-0 pip5k1 pip5k2 mutant none 5d PRJNA525816 10318364 0.8234 2020/3/10 GSM3656501 pip5k1 pip5k2_Mock_7d_rep1 leaves Col-0 pip5k1 pip5k2 mutant none 7d PRJNA525816 10345487 0.8058 2020/3/10 GSM3656468 Col_Ec_2dpi_rep1 leaves Col-0 wild type Erysiphe cichoracearum 2dpi PRJNA525816 10737869 0.7503 2020/3/10 GSM3656474 Col_Ec_5dpi_rep1 leaves Col-0 wild type Erysiphe cichoracearum 5dpi PRJNA525816 13625726 0.7832 2020/3/10 GSM3656480 Col_Ec_7dpi_rep1 leaves Col-0 wild type Erysiphe cichoracearum 7dpi PRJNA525816 9915712 0.7519 2020/3/10 GSM3656486 Col_Mock_2d_rep1 leaves Col-0 wild type none 2d PRJNA525816 11414463 0.7792 2020/3/10 GSM3656492 Col_Mock_5d_rep1 leaves Col-0 wild type none 5d PRJNA525816 11429856 0.7905 2020/3/10 GSM3656498 Col_Mock_7d_rep1 leaves Col-0 wild type none 7d PRJNA525816 10315611 0.7566 2020/3/10 SRX5494234 HS-2.5-rep3 seedling Col-0 wild type 37 heat shock 2.5 min* PRJNA526082 36389005 0.9244 2020/3/7 SRX5494229 HS-7.5-rep2 seedling Col-0 wild type 37 heat shock 7.5 min* PRJNA526082 28409988 0.9279 2020/3/7 SRX5494233 NHS-rep3 seedling Col-0 wild type control PRJNA526082 29964210 0.9311 2020/3/7 SRX5494605 Col-HS-rep1 rosette leaf Col-0 wild type 37 heat shock 10 min* PRJNA526125 24807863 0.7171 2020/3/7 SRX5494597 Col-NHS-rep3 rosette leaf Col-0 wild type control PRJNA526125 22137951 0.7009 2020/3/7 SRX5501278 water_+_water_rep3 Rosette leaves Col-0 -- water+water* PRJNA526343 28487950 0.8629 2020/4/9 GSM3665904 CRT1-Col_root_treated_1-1 Root Col-0 wild type CdCl2 72hr PRJNA526623 10397220 0.8165 2020/3/16 GSM3665907 CRT2-Col_root_treated_2-1 Root Col-0 wild type CdCl2 72hr PRJNA526623 12725651 0.8095 2020/3/16 GSM3665910 CRT3-Col_root_treated_3-1 Root Col-0 wild type CdCl2 72hr PRJNA526623 12728552 0.819 2020/3/16 GSM3665895 CST1-Col_shoot_treated_1-1 Shoot Col-0 wild type CdCl2 72hr PRJNA526623 14038674 0.8143 2020/3/16 GSM3665898 CST2-Col_shoot_treated_2-1 Shoot Col-0 wild type CdCl2 72hr PRJNA526623 14122949 0.8265 2020/3/16 GSM3665901 CST3-Col_shoot_treated_3-1 Shoot Col-0 wild type CdCl2 72hr PRJNA526623 14157027 0.7946 2020/3/16 GSM3667125 Protoplast_0N_Rep1 root protoplasts Col-0 -- 0N PRJNA526775 18133346 0.7302 2019/3/15 GSM3667110 EV_0N_Rep1 root protoplasts Col-0 -- 0N, Cycloheximide, Dexamethasone PRJNA526775 15039320 0.709 2019/3/15 GSM3667141 TGA4_0N_Rep1 root protoplasts Col-0 -- 0N, Cycloheximide, Dexamethasone PRJNA526775 12359655 0.7227 2019/3/15 GSM3667113 EV_5N_Rep1 root protoplasts Col-0 -- 5N, Cycloheximide, Dexamethasone PRJNA526775 10886180 0.7222 2019/3/15 GSM3667144 TGA4_5N_Rep1 root protoplasts Col-0 -- 5N, Cycloheximide, Dexamethasone PRJNA526775 11415449 0.735 2019/3/15 GSM3667129 Protoplast_60N_Rep1 root protoplasts Col-0 -- 60N PRJNA526775 13221093 0.7003 2019/3/15 GSM3667116 EV_60N_Rep1 root protoplasts Col-0 -- 60N, Cycloheximide, Dexamethasone PRJNA526775 13608606 0.7481 2019/3/15 GSM3667147 TGA4_60N_Rep1 root protoplasts Col-0 -- 60N, Cycloheximide, Dexamethasone PRJNA526775 13665731 0.7288 2019/3/15 GSM3667122 EV_pChx_Rep1 root protoplasts Col-0 -- Nitrogen, plus Cycloheximide, Dexamethasone PRJNA526775 20700263 0.7783 2019/3/15 GSM3667133 Root_0N_Rep1 whole roots Col-0 -- 0N PRJNA526775 15489488 0.8905 2019/3/15 GSM3667137 Root_60N_Rep1 whole roots Col-0 -- 60N PRJNA526775 14848545 0.8631 2019/3/15 SRX5576226 At_Nm_1 root Col-0 -- -- PRJNA526801 40151406 0.8095 2019/3/26 SRX5576222 At_Ri_2 root Col-0 -- -- PRJNA526801 46999516 0.7728 2019/3/26 GSM3674583 RNA_Arabidopsis_7days_leaf_rep1 leaf Col-0 -- -- PRJNA527732 32630619 0.9046 2019/9/19 GSM3677733 COL_rep1 4PGD seedlings Col-0 Wild type grown in the dark for 4 days, at 22°C . PRJNA527851 25184853 0.799 2019/9/5 GSM3677735 f1f3_rep1 4PGD seedlings Col-0 fypp1 fypp3 homozygote grown in the dark for 4 days, at 22°C . PRJNA527851 26966263 0.8045 2019/9/5 GSM3677737 pifq_rep1 4PGD seedlings Col-0 pifq1 pifq3 piq4 pifq5 homozygote grown in the dark for 4 days, at 22°C . PRJNA527851 36738173 0.8137 2019/9/5 SRX5544594 Control -4 Aerial Col-0 Transgenic: p35S::BAR and p35S::GFP -- PRJNA528094 17505072 0.8674 2019/3/19 GSM3687874 tex1-4_PE_rep1 10 day old roots Col-0 tex1-4 Petri dishes PRJNA529202 61961819 0.8851 2020/3/25 GSM3687871 col0_PE_rep1 10 day old roots Col-0 wild type Petri dishes PRJNA529202 50896413 0.8967 2020/3/25 GSM3687883 pho1-7_SE_rep1 3 weeks old roots Col-0 pho1-7 Pots PRJNA529202 67601912 0.8561 2020/3/25 GSM3687881 pho1-7hpr1-5_SE_rep1 3 weeks old roots Col-0 pho1-7hpr1-5 Pots PRJNA529202 78104551 0.8544 2020/3/25 GSM3687879 pho1-7tex1-4_SE_rep1 3 weeks old roots Col-0 pho1-7tex1-4 Pots PRJNA529202 62635892 0.8554 2020/3/25 GSM3687877 col0_SE_rep1 3 weeks old roots Col-0 wild type Pots PRJNA529202 80280327 0.8399 2020/3/25 GSM3688580 Microsome polysomal RNA ddm1 Rep 1 Inflorescence tissues Col-0 ddm1-2 -- PRJNA529391 28792101 0.9396 2020/3/14 GSM3688568 Total RNA ddm1 Rep 1 Inflorescence tissues Col-0 ddm1-2 -- PRJNA529391 12422610 0.8476 2020/3/14 GSM3688574 Total polysomal RNA ddm1 Rep 1 Inflorescence tissues Col-0 ddm1-2 -- PRJNA529391 9052481 0.8813 2020/3/14 GSM3688583 Microsome polysomal RNA ddm1rdr6 Rep 1 Inflorescence tissues Col-0 ddm1-2 rdr6-15 -- PRJNA529391 32634479 0.9213 2020/3/14 GSM3688571 Total RNA ddm1rdr6 Rep 1 Inflorescence tissues Col-0 ddm1-2 rdr6-15 -- PRJNA529391 9350286 0.8872 2020/3/14 GSM3688577 Total polysomal RNA ddm1rdr6 Rep 1 Inflorescence tissues Col-0 ddm1-2 rdr6-15 -- PRJNA529391 7620459 0.8807 2020/3/14 GSM3690288 Col-0_Mock_rep1 leaf Col-0 -- Mock PRJNA529701 20454366 0.9109 2019/3/29 GSM3690303 Col-0_Pathogen_rep1 leaf Col-0 -- Pathogen PRJNA529701 20496522 0.9078 2019/3/29 GSM3690671 At1++_7-1 seedlings Col-0 AtIPCS1 over expressing line untreated PRJNA529715 18554759 0.8577 2019/5/7 GSM3690668 At1+_3-1 seedlings Col-0 AtIPCS1 over expressing line untreated PRJNA529715 16950973 0.856 2019/5/7 GSM3690677 At2++_9-1 seedlings Col-0 AtIPCS2 over expressing line untreated PRJNA529715 14523327 0.8347 2019/5/7 GSM3690674 At2+_2-1 seedlings Col-0 AtIPCS2 over expressing line untreated PRJNA529715 17228573 0.8618 2019/5/7 GSM3690683 At3++_5-1 seedlings Col-0 AtIPCS3 over expressing line untreated PRJNA529715 18640891 0.8804 2019/5/7 GSM3690680 At3+_4-1 seedlings Col-0 AtIPCS3 over expressing line untreated PRJNA529715 15914826 0.8685 2019/5/7 GSM3690686 Col0-1 seedlings Col-0 wild type untreated PRJNA529715 15943598 0.8707 2019/5/7 GSM3692910 iGFP-TFIIS_b rep1 Seedlings Col-0 tfIIs-1 (SALK_056755) 2 mM b-estradiol PRJNA529898 31712987 0.8033 2020/3/25 GSM3692916 iGFP-TFIISmut_b rep1 Seedlings Col-0 tfIIs-1 (SALK_056755) 2 mM b-estradiol PRJNA529898 25535781 0.9056 2020/3/25 GSM3692907 iGFP-TFIIS_m rep1 Seedlings Col-0 tfIIs-1 (SALK_056755) EtOH PRJNA529898 35731128 0.9031 2020/3/25 GSM3692913 iGFP-TFIISmut_m rep1 Seedlings Col-0 tfIIs-1 (SALK_056755) EtOH PRJNA529898 33104335 0.9011 2020/3/25 SRX5634102 Control rep 3 Root Col-0 -- control PRJNA530821 22037053 0.9232 2019/12/31 SRX5634099 PFOA rep 3 Root Col-0 -- perHluorooctanoic acid PRJNA530821 23937167 0.9272 2019/12/31 GSM3712364 NoBacteria_50Pi_Rep2_2 whole seedling Col-0 Col-0 50Pi_NoBacteria PRJNA531168 5327508 0.9237 2019/4/7 GSM3712381 SynCom_50Pi_Rep2_1 whole seedling Col-0 Col-0 50Pi_SynCom PRJNA531168 6205546 0.9231 2019/4/7 GSM3714860 TSS-Seq in hen2-2 cold - rep1 14day seedlings Col-0 Hen2-2 4C cold treatment for 3h PRJNA531657 66709425 0.8344 2019/10/29 GSM3714858 TSS-Seq in hen2-2 - rep1 14day seedlings Col-0 Hen2-2 none PRJNA531657 60660517 0.8194 2019/10/29 GSM3714862 TSS-Seq in WT cold - rep1 14day seedlings Col-0 wild type 4C cold treatment for 3h PRJNA531657 44040519 0.8893 2019/10/29 GSM3716756 Col-0 rep1 seedlings Col-0 wild type -- PRJNA531896 18399988 0.8864 2020/4/10 GSM3728301 prp40c mutant rep 1 2-week seedlings Col-0 prp40c -/- Continuous white light 22degreeC PRJNA534210 21966696 0.8555 2019/10/31 GSM3728299 wt Col-0 rep 2 2-week seedlings Col-0 wild type Continuous white light 22degreeC PRJNA534210 8061370 0.9094 2019/10/31 GSM3762827 Pi_R1 roots Col-0 -- grown with phosphate PRJNA542492 23785916 0.9244 2019/11/1 GSM3762833 Pi_cZ_R1 roots Col-0 -- grown with phosphate and treated with cis-zeatin PRJNA542492 23630739 0.9152 2019/11/1 GSM3762830 Pi_tZ_R1 roots Col-0 -- grown with phosphate and treated with trans-zeatin PRJNA542492 23773656 0.9288 2019/11/1 GSM3762836 5Pi_R1 roots Col-0 -- grown without phosphate PRJNA542492 23719533 0.9161 2019/11/1 GSM3762842 5Pi_cZ_R1 roots Col-0 -- grown without phosphate and treated with cis-zeatin PRJNA542492 24047084 0.9148 2019/11/1 GSM3762839 5Pi_tZ_R1 roots Col-0 -- grown without phosphate and treated with trans-zeatin PRJNA542492 23639166 0.9175 2019/11/1 GSM3767883 hos15-4 mutant Rep2 whole shoot Col-0 hos15-4 mutant -- PRJNA543016 5252586 0.8082 2020/2/24 GSM3813847 Col R1 rosette leaves Col-0 wild type -- PRJNA544417 22926878 0.8679 2019/11/9 SRX5900576 OX-2 seedlings Col-0 MYB49OX salt PRJNA544786 21776830 0.9124 2019/5/25 SRX5900575 SR-3 seedlings Col-0 MYB49SR salt PRJNA544786 21822616 0.9172 2019/5/25 SRX5900580 col-0-1 seedlings Col-0 wild type salt PRJNA544786 21812202 0.9222 2019/5/25 SRX5979120 Wound-1 leaf Col-0 -- Wounding PRJNA546127 16268402 0.9367 2020/1/5 SRX5979122 AtMYB46-1 leaf Col-0 -- trans-gene-AtMYB46 PRJNA546127 15162794 0.9399 2020/1/5 SRX5979118 Control-2 leaf Col-0 -- trans-gene-AtMYB46 PRJNA546127 10682381 0.9365 2020/1/5 SRX5979116 WT-2 leaf Col-0 wild type Wounding PRJNA546127 14965056 0.9185 2020/1/5 GSM3851782 Col_6h1 Whole seedlings Col-0 Wild type 6h acclimation-level UV-B PRJNA546251 27175877 0.8918 2020/2/20 GSM3851780 Col_WL2 Whole seedlings Col-0 Wild type low white light PRJNA546251 21705487 0.8163 2020/2/20 GSM3851791 pif45_wl1 Whole seedlings Col-0 pif4-101 pif5-1 low white light PRJNA546251 25320069 0.8681 2020/2/20 GSM3851788 uvr8-6_6h1 Whole seedlings Col-0 uvr8-6 6h acclimation-level UV-B PRJNA546251 16585389 0.8902 2020/2/20 GSM3851785 uvr8-6_wl1 Whole seedlings Col-0 uvr8-6 low white light PRJNA546251 24865989 0.8826 2020/2/20 SRX5995786 LinWei_RNA_Seq_Col-0_0hai_cotyledon_Rep1 in vitro cotyledon Col-0 -- 0hai PRJNA547955 21009728 0.9446 2020/3/27 SRX5995782 LinWei_RNA_Seq_rdd-2_0hai_cotyledon_Rep1 in vitro cotyledon Col-0 -- 0hai PRJNA547955 19161466 0.9502 2020/3/27 SRX5995784 LinWei_RNA_Seq_Col-0_48hai_cotyledon_Rep1 in vitro cotyledon Col-0 -- 48hai PRJNA547955 20583297 0.9459 2020/3/27 SRX5995790 LinWei_RNA_Seq_rdd-2_48hai_cotyledon_Rep1 in vitro cotyledon Col-0 -- 48hai PRJNA547955 21046238 0.9467 2020/3/27 GSM3863056 RNA-Seq-Col-Control-Rep1 seedings Col-0 -- Control PRJNA547995 33115474 0.9086 2020/3/25 GSM3863058 RNA-Seq-Col-Heat-Rep1 seedings Col-0 -- Heat PRJNA547995 33578171 0.9081 2020/3/25 GSM3863060 RNA-Seq-Col-Recovery-Rep1 seedings Col-0 -- Recovery PRJNA547995 27037331 0.8449 2020/3/25 SRX6043985 flg22-2 collet Col-0 wild type Hlg22 1 uM PRJNA548363 31857898 0.7469 2019/8/22 SRX6043988 Mock-1 collet Col-0 wild type Mock PRJNA548363 33162686 0.7772 2019/8/22 GSM3899026 6 h C6_2 seedlings Col-0 wild type 6h_C6 PRJNA549850 14042371 0.8644 2019/6/21 GSM3899023 6 h nlp20_2 seedlings Col-0 wild type 6h_nlp20 PRJNA549850 18067477 0.8696 2019/6/21 GSM3901393 WT replicate 1 root Col-0 wild type -- PRJNA550141 25405601 0.8227 2019/11/12 GSM3949107 Col-0_JA_0_25hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 0.25h PRJNA551415 35965991 0.877 2020/3/13 GSM3949110 Col-0_JA_0_5hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 0.5h PRJNA551415 41128437 0.8727 2020/3/13 GSM4125611 Second_Col-0_JA_0.5hour_RNAseq_rep2 Three day old etiolated seedlings Col-0 wild type JA treatment for 0.5h PRJNA551415 12776362 0.7849 2020/3/13 GSM3949104 Col-0_JA_0hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 0h PRJNA551415 36447699 0.8739 2020/3/13 GSM4125607 Second_Col-0_JA_0hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 0h PRJNA551415 13353035 0.8175 2020/3/13 GSM3949125 Col-0_JA_12hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 12h PRJNA551415 41873494 0.8697 2020/3/13 GSM3949113 Col-0_JA_1hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 1h PRJNA551415 38696220 0.8761 2020/3/13 GSM4125613 Second_Col-0_JA_1hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 1h PRJNA551415 15650628 0.8118 2020/3/13 GSM3949128 Col-0_JA_24hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 24h PRJNA551415 40782699 0.8736 2020/3/13 GSM3949116 Col-0_JA_2hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 2h PRJNA551415 41167469 0.8765 2020/3/13 GSM3949119 Col-0_JA_4hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 4h PRJNA551415 38988294 0.8757 2020/3/13 GSM4125616 Second_Col-0_JA_4hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 4h PRJNA551415 16840515 0.8258 2020/3/13 GSM3949122 Col-0_JA_8hour_RNAseq_rep1 Three day old etiolated seedlings Col-0 wild type JA treatment for 8h PRJNA551415 29707332 0.865 2020/3/13 GSM3908325 fry1_mRNA_1 2-week seedlings Col-0 fry1 -- PRJNA551455 19756287 0.8112 2019/10/9 GSM3908329 fry1rdr1_mRNA_1 2-week seedlings Col-0 fry1rdr6 -- PRJNA551455 26738136 0.815 2019/10/9 GSM3908327 fry1rdr6_mRNA_1 2-week seedlings Col-0 fry1rdr6 -- PRJNA551455 29568938 0.8296 2019/10/9 GSM3912166 ML1-PIF4 rep1 5-day-old whole seedlings Col-0 ML1p::PIF4;pifq -- PRJNA551939 55719348 0.947 2020/2/20 GSM3912168 SUC2-PIF4 rep1 5-day-old whole seedlings Col-0 SUC2p::PIF4;pifq -- PRJNA551939 53991817 0.9559 2020/2/20 GSM3912170 pifq rep1 5-day-old whole seedlings Col-0 pifq -- PRJNA551939 51155530 0.954 2020/2/20 GSM3912164 Col-0 rep1 5-day-old whole seedlings Col-0 wild type -- PRJNA551939 56619707 0.935 2020/2/20 GSM3933411 FRp rep1 seeds Col-0 wild type Har red pulse Hor 20 min PRJNA553510 14700801 0.754 2019/7/10 GSM3933408 Rp rep1 seeds Col-0 wild type red-light pulse Hor 20 min PRJNA553510 16019506 0.8667 2019/7/10 GSM3936256 0.1% EtOH rep1 rosette Col-0 wild type 0.1% EtOH* PRJNA553702 23874897 0.8915 2019/12/2 GSM3936269 100μM MEL rep1 rosette Col-0 wild type 100μM MEL* PRJNA553702 29105294 0.9148 2019/12/2 GSM3936261 4.5μM NAA rep1 rosette Col-0 wild type 4.5μM NAA* PRJNA553702 23752930 0.8984 2019/12/2 GSM3936265 5μM MEL rep1 rosette Col-0 wild type 5μM MEL* PRJNA553702 22499526 0.9074 2019/12/2 SRX6451342 crf2 untreated replicate 1 whole plant Col-0 crf2-2 untreated PRJNA554020 15902748 0.8117 2019/12/31 SRX6451337 crf5+H2O2 replicate 3 whole plant Col-0 crf5-6 oxidative stress (H2O2)* PRJNA554020 14989030 0.7782 2019/12/31 SRX6451346 crf5 untreated replicate 1 whole plant Col-0 crf5-6 untreated PRJNA554020 11954956 0.8089 2019/12/31 SRX6451334 WT+H2O2 replicate 2 whole plant Col-0 wild type oxidative stress (H2O2)* PRJNA554020 13717964 0.7976 2019/12/31 SRX6451332 WT+NaCl replicate 1 whole plant Col-0 wild type salt stress(NaCl)* PRJNA554020 14870116 0.7981 2019/12/31 SRX6451336 WT untreated replcate 3 whole plant Col-0 wild type untreated PRJNA554020 13544553 0.8082 2019/12/31 GSM3945669 Leaves, HS-1 leaves Col-0 wild type Heat stress PRJNA555093 39918118 0.9308 2019/11/28 GSM3945668 Leaves, HL-1 leaves Col-0 wild type High light PRJNA555093 38638593 0.938 2019/11/28 GSM3945670 Leaves, HL+HS-1 leaves Col-0 wild type Highlight + Heat stress PRJNA555093 32438630 0.922 2019/11/28 GSM3945667 Leaves, CT-1 leaves Col-0 wild type control PRJNA555093 36875552 0.9251 2019/11/28 GSM3946190 atcgl20ab_2 whole plant Col-0 atcgl20ab -- PRJNA555110 11146228 0.9298 2020/3/16 GSM3946187 Col_0_1 whole plant Col-0 wild type -- PRJNA555110 12731265 0.9255 2020/3/16 GSM3928334 AC-1 Apical cell Col-0 -- -- PRJNA558807 28285967 0.8242 2020/2/20 GSM3928337 BC-1 Basal cell Col-0 -- -- PRJNA558807 27573319 0.755 2020/2/20 GSM3928340 32E-1 Embryo proper Col-0 -- -- PRJNA558807 23028416 0.7494 2020/2/20 SRX6685613 OE43_1 root Col-0 WRKY15 overexpression Line #43 -- PRJNA558847 22451574 0.9428 2020/1/1 SRX6685607 WT_1 root Col-0 wild type -- PRJNA558847 22623867 0.9361 2020/1/1 SRX5187306 npr1_49h_L_R1 apical part Col-0 npr1 49h aHter low R/HR* PRJNA560257 6533105 0.7424 2019/12/31 SRX5187287 sid2_49h_L_R3 apical part Col-0 sid2 49h aHter low R/HR* PRJNA560257 5507976 0.7727 2019/12/31 GSM4047435 lsm8-2 rep 1 whole seedlings Col-0 lsm8-2 -- PRJNA562295 22882731 0.8351 2020/2/20 GSM4047441 lsm8-2 rrp4-2 rep 1 whole seedlings Col-0 lsm8-2 rrp4-2 -- PRJNA562295 19938555 0.8758 2020/2/20 GSM4047438 rrp4-2 rep 1 whole seedlings Col-0 rrp4-2 -- PRJNA562295 22904252 0.838 2020/2/20 GSM4047432 wt rep 1 whole seedlings Col-0 wild type -- PRJNA562295 23274322 0.825 2020/2/20 GSM4055164 tt19-8 Rep 1 Seedling Col-0 tt19 -- PRJNA563055 39260812 0.9215 2020/4/21 GSM4055146 tt19-8 S1 Rep 1 Seedling Col-0 tt19; suppressor S1 -- PRJNA563055 62845568 0.9252 2020/4/21 GSM4055149 tt19-8 S2 Rep 1 Seedling Col-0 tt19; suppressor S2 -- PRJNA563055 46947550 0.9227 2020/4/21 GSM4055152 tt19-8 S4 Rep 1 Seedling Col-0 tt19; suppressor S4 -- PRJNA563055 72950036 0.9255 2020/4/21 GSM4055155 tt19-8 S5 Rep 1 Seedling Col-0 tt19; suppressor S5 -- PRJNA563055 63626490 0.9267 2020/4/21 GSM4055158 tt19-8 S7 Rep 1 Seedling Col-0 tt19; suppressor S7 -- PRJNA563055 34852674 0.9119 2020/4/21 GSM4055161 tt19-8 S8 Rep 1 Seedling Col-0 tt19; suppressor S8 -- PRJNA563055 34349630 0.9177 2020/4/21 GSM4055167 Col-0 Rep 1 Seedling Col-0 wild type -- PRJNA563055 51807730 0.9269 2020/4/21 SRX6794372 Single-walled carbon nanohorns (SWCNHs)-treated plants_C_NP_1 seedlings Col-0 -- Single-walled carbon nanohorns (SWCNHs)-treated PRJNA563135 23659763 0.904 2019/9/4 SRX6794369 7-d-old Col-0 seedlings untreated control_1 seedlings Col-0 -- untreated PRJNA563135 25860302 0.8974 2019/9/4 GSM4086201 LL_CT2 seedling Col-0 -- continuous light PRJNA566413 23237703 0.9511 2019/10/9 GSM4086217 LD_ZT2 seedling Col-0 -- long-day condition (16 h ligh/8 h dark) PRJNA566413 22165556 0.8343 2019/10/9 SRX6955491 Cop1 rep1 stamen Col-0 cop1-4 mutant -- PRJNA576031 45974817 0.9021 2020/2/10 GSM4109556 HMZ014_Dione_2DAT_rep1 seedlings Col-0 -- Diacetyl PRJNA576144 10524516 0.9092 2019/12/5 GSM4109548 HMZ008_0.05T_5DAT_rep1 seedlings Col-0 -- GMV PRJNA576144 20090985 0.9631 2019/12/5 GSM4109552 HMZ008_0.5T_5DAT_rep1 seedlings Col-0 -- GMV PRJNA576144 20693428 0.9641 2019/12/5 GSM4109546 HMZ008_0.05C_5DAT_rep1 seedlings Col-0 -- mock PRJNA576144 18215253 0.9665 2019/12/5 GSM4109550 HMZ008_0.5C_5DAT_rep1 seedlings Col-0 -- mock PRJNA576144 22375180 0.9626 2019/12/5 GSM4109554 HMZ014_CK_2DAT_rep1 seedlings Col-0 -- mock PRJNA576144 14275031 0.9218 2019/12/5 SRX6986772 WRKY21-1 whole plant Col-0 AtWRKY21* control PRJNA577437 22067250 0.815 2019/10/14 SRX6986769 PEGWRKY21-2 whole plant Col-0 AtWRKY21* osmotic stress PEG* PRJNA577437 28736270 0.7744 2019/10/14 SRX6986767 WT1 whole plant Col-0 wild type control PRJNA577437 23665414 0.7892 2019/10/14 SRX6986775 PEGWT1 whole plant Col-0 wild type osmotic stress PEG* PRJNA577437 26615202 0.8099 2019/10/14 GSM4132325 T0_rep1 wounded region of detached leaf explants with partial petiole Col-0 wild type control PRJNA578672 46341052 0.715 2019/10/24 GSM4132327 DAC2_rep1 wounded region of detached leaf explants with partial petiole Col-0 wild type dark 2day PRJNA578672 42464812 0.7252 2019/10/24 GSM4133880 vip3 RNA-Seq - replicate 1 Primary inflorescence of shoot apices Col-0 vip3-1 null -- PRJNA578729 56185383 0.9361 2019/10/24 GSM4133877 WT RNA-Seq - replicate 1 Primary inflorescence of shoot apices Col-0 wild type -- PRJNA578729 74598464 0.9181 2019/10/24 GSM4142594 CRISPR_30a_1 complete rosette Col-0 -- -- PRJNA579992 34569634 0.8891 2019/10/29 GSM4142597 GLDT_30a_1 complete rosette Col-0 -- -- PRJNA579992 40459621 0.9016 2019/10/29 GSM4142600 GLDT_trunc_1 complete rosette Col-0 -- -- PRJNA579992 39400011 0.907 2019/10/29 GSM4142591 act_tagged_55_1 complete rosette Col-0 -- -- PRJNA579992 36899479 0.8999 2019/10/29 GSM4142588 Ref_1 complete rosette Col-0 wild type -- PRJNA579992 38155727 0.907 2019/10/29 GSM4145026 arid5-rep1 seedings Col-0 arid5(-/-) -- PRJNA586757 25033825 0.9211 2019/11/1 GSM4145028 chr11/17-rep1 seedings Col-0 chr11(-/-)chr17(-/-) -- PRJNA586757 28051753 0.906 2019/11/1 GSM4145030 rlt1/2-rep1 seedings Col-0 rlt1(-/-)rlt2(-/-) -- PRJNA586757 30469529 0.9124 2019/11/1 GSM4145024 WT-rep1 seedings Col-0 wild type -- PRJNA586757 28338104 0.9199 2019/11/1 SRX7083038 brca1-0h-1 the whole plant Col-0 atbrca1-1 -- PRJNA586762 15516183 0.8954 2019/11/18 SRX7083034 col-0h-1 the whole plant Col-0 wild type -- PRJNA586762 16651814 0.8906 2019/11/18 GSM4151811 bsuq flg1 seedling Col-0 bsu-q flg22-treated PRJNA588072 23281035 0.799 2019/11/12 GSM4151805 bsuq ct1 seedling Col-0 bsu-q untreated PRJNA588072 13952309 0.799 2019/11/12 GSM4151808 Col-0 flg1 seedling Col-0 wild type flg22-treated PRJNA588072 14517063 0.803 2019/11/12 SRX7136600 Arath_flower_buds_nacbeta1_1 flower buds Col-0 nacbeta1 -- PRJNA589533 20657116 0.8761 2019/11/15 SRX7136597 Arath_flower_buds_nacbeta1nacbeta2_2 flower buds Col-0 nacbeta1nacbeta2 -- PRJNA589533 22681644 0.9401 2019/11/15 SRX7136603 Arath_flower_buds_nacbeta2_1 flower buds Col-0 nacbeta2 -- PRJNA589533 22768555 0.9223 2019/11/15 SRX7136595 Arath_flower_buds_WT_1 flower buds Col-0 wild type -- PRJNA589533 22162342 0.924 2019/11/15 SRX7158154 ccc1-CK-1 whole seedling Col-0 ccc1 mutant CK PRJNA589953 29796077 0.8489 2019/12/31 SRX7158151 Col-0-CK-1 whole seedling Col-0 wild type CK PRJNA589953 24177802 0.7964 2019/12/31 GSM4196120 MYB30-OE rep1 whole seedling Col-0 MYB30- over expression -- PRJNA592211 16940607 0.8723 2020/4/14 GSM4196117 myb30 rep1 whole seedling Col-0 myb30 mutant -- PRJNA592211 18718722 0.8895 2020/4/14 GSM4196114 Col rep1 whole seedling Col-0 wild type -- PRJNA592211 17632381 0.8879 2020/4/14 GSM4200535 stch4_24hr_rep-1 seedling Col-0 stch4-1 24C treatment for 4 hours PRJNA593027 19279821 0.8622 2019/12/9 GSM4200532 stch4_4hr_rep-1 seedling Col-0 stch4-1 4C treatment for 4 hours PRJNA593027 18691138 0.7584 2019/12/9 GSM4200529 stch4_0hr_rep-1 seedling Col-0 stch4-1 without 4C treatment PRJNA593027 21578136 0.8266 2019/12/9 GSM4200526 col-0_24hr_rep-1 seedling Col-0 wild type 24C treatment for 4 hours PRJNA593027 26212490 0.7874 2019/12/9 GSM4200523 col-0_4hr_rep-1 seedling Col-0 wild type 4C treatment for 4 hours PRJNA593027 19903190 0.8202 2019/12/9 GSM4200520 col-0_0hr_rep-1 seedling Col-0 wild type without 4C treatment PRJNA593027 15645067 0.7661 2019/12/6 SRX7261878 pollen of atnot1-1 +/- repeat 1 pollen Col-0 atnot1-1 +/- -- PRJNA593312 12849234 0.7683 2020/1/9 SRX7261876 pollen of wild-type repeat 1 pollen Col-0 wild type -- PRJNA593312 9099897 0.7572 2020/1/9 GSM4216733 clpp2-1_1 whole seedling Col-0 clpp2-1: KO-1 of mtCLPP2 (AT5g23140) -- PRJNA595358 41747147 0.9253 2019/12/16 GSM4216736 clpp2-2_1 whole seedling Col-0 clpp2-2: KO-2 of mtCLPP2 (AT5g23140) -- PRJNA595358 41898446 0.9226 2019/12/16 GSM4216730 wt_1 whole seedling Col-0 wild type -- PRJNA595358 41603760 0.926 2019/12/16 GSM4217890 Pcap-S32 phloem cap Col-0 -- -- PRJNA595604 23446707 0.8389 2020/2/10 GSM4217892 Pith-S34 pith Col-0 -- -- PRJNA595604 24593314 0.8482 2020/2/10 GSM4217888 LCMCtl-S30 vascular bundle without phloem cap Col-0 -- -- PRJNA595604 23403325 0.9147 2020/2/10 GSM4224095 35S -RTL1-Myc in Col-0 replicate2 Seedlings Col-0 35S-RTL1 -- PRJNA596449 29343227 0.9496 2019/12/20 GSM4224091 35S-RTL2 in Col-0 replicate1 Seedlings Col-0 35S-RTL2 -- PRJNA596449 21268104 0.9472 2019/12/20 GSM4224088 dcl2dcl3dcl4 replicate1 Seedlings Col-0 dcl234 -- PRJNA596449 25308266 0.9456 2019/12/20 GSM4224086 35S-RTL2 in dcl2dcl3dcl4 replicate1 Seedlings Col-0 dcl234/35S-RTL2 -- PRJNA596449 28191626 0.9454 2019/12/20 GSM4224094 rtl2-1 replicate1 Seedlings Col-0 rtl2 -- PRJNA596449 24985622 0.9467 2019/12/20 GSM4224092 Col-0 replicate1 Seedlings Col-0 wild type -- PRJNA596449 24726336 0.9488 2019/12/20 GSM4231547 p-T1R1 leaf Col-0 -- 22C T1 PRJNA597344 9083822 0.8374 2019/12/26 GSM4231549 p-T2R1 leaf Col-0 -- 22C T2 PRJNA597344 8609178 0.8841 2019/12/26 GSM4231556 p-T6R1 leaf Col-0 -- 22C T6 PRJNA597344 10755254 0.9107 2019/12/26 GSM4231558 p-T7R1 leaf Col-0 -- 22C T7 PRJNA597344 16084786 0.8541 2019/12/26 GSM4231560 p-T8R1 leaf Col-0 -- 22C T8 PRJNA597344 11161832 0.9134 2019/12/26 GSM4231562 p-T9R1 leaf Col-0 -- 22C T9 PRJNA597344 15264199 0.9297 2019/12/26 GSM4231568 T1R1 leaf Col-0 -- 45C T1 PRJNA597344 10459782 0.9185 2019/12/26 GSM4231588 T11R1 leaf Col-0 -- 45C T11 PRJNA597344 16777226 0.8625 2019/12/26 GSM4231570 T2R1 leaf Col-0 -- 45C T2 PRJNA597344 15096289 0.8817 2019/12/26 GSM4231572 T3R1 leaf Col-0 -- 45C T3 PRJNA597344 15208591 0.9294 2019/12/26 GSM4231576 T5R1 leaf Col-0 -- 45C T5 PRJNA597344 19767610 0.9005 2019/12/26 GSM4231580 T7R1 leaf Col-0 -- 45C T7 PRJNA597344 15394195 0.9063 2019/12/26 GSM4231582 T8R1 leaf Col-0 -- 45C T8 PRJNA597344 9747872 0.9005 2019/12/26 GSM4231584 T9R1 leaf Col-0 -- 45C T9 PRJNA597344 17047382 0.9204 2019/12/26 SRX7489749 control-1 seedlings Col-0 -- control PRJNA598551 21010837 0.9368 2020/1/2 SRX7489752 VOC-1 seedlings Col-0 -- volatile organic compounds* PRJNA598551 20995142 0.9377 2020/1/2 GSM4274334 jac1 non-treated rep1 whole rosette Col-0 jac1 mutant Non-treated control PRJNA601525 42042195 0.9142 2020/3/26 GSM4274328 wildtype non-treated rep1 whole rosette Col-0 wild type Non-treated control PRJNA601525 43265562 0.9194 2020/3/26 GSM4274304 phot1 non-treated rep1 whole rosette Col-0 phot1 mutant Non-treated control PRJNA601526 43188318 0.9165 2020/3/26 GSM4274316 phot1/phot2 non-treated rep1 whole rosette Col-0 phot1/phot2 mutant Non-treated control PRJNA601526 39529158 0.9193 2020/3/26 GSM4274310 phot2 non-treated rep1 whole rosette Col-0 phot2 mutant Non-treated control PRJNA601526 44898804 0.9177 2020/3/26 GSM4274298 Wild-type non-treated rep1 whole rosette Col-0 wild type Non-treated control PRJNA601526 43265562 0.9194 2020/3/26 SRX7582592 Sample_AtRALF1-replicate1 root Col-0 -- root AtRALH1 treatment PRJNA601643 21816424 0.8881 2020/1/19 SRX7582603 Sample_MhRALF3-replicate1 root Col-0 -- root MhRALH3 treatment PRJNA601643 19975862 0.9011 2020/1/19 SRX7582596 Sample_Mock2-replicate1 root Col-0 -- root MiRALH1 Mock PRJNA601643 23014766 0.9478 2020/1/19 SRX7582600 Sample_MiRALF1-replicate1 root Col-0 -- root MiRALH1 treatment PRJNA601643 22886650 0.9521 2020/1/19 SRX7582594 Sample_Mock1-replicate2 root Col-0 -- root Mock PRJNA601643 22704994 0.9435 2020/1/19 SRX7581662 cot_A_1 cotyledon Col-0 -- -- PRJNA602128 49655928 0.8534 2020/1/19 SRX7581664 cot_B_1 cotyledon Col-0 -- -- PRJNA602128 50487298 0.8546 2020/1/19 SRX7581666 cot_C_1 cotyledon Col-0 -- -- PRJNA602128 50283461 0.8213 2020/1/19 SRX7582174 ftl_A_1 first true leaf Col-0 -- -- PRJNA602150 42963385 0.822 2020/1/19 SRX7582176 ftl_B_1 first true leaf Col-0 -- -- PRJNA602150 46246845 0.804 2020/1/19 SRX7582178 ftl_C_1 first true leaf Col-0 -- -- PRJNA602150 49015667 0.8627 2020/1/19 SRX7582578 stl_A_1 second true leaf Col-0 -- -- PRJNA602161 44500183 0.8183 2020/1/19 SRX7582580 stl_B_1 second true leaf Col-0 -- -- PRJNA602161 62513478 0.8255 2020/1/19 SRX7582582 stl_C_1 second true leaf Col-0 -- -- PRJNA602161 49028729 0.8368 2020/1/19 GSM4279797 egg extract rep1 leaf Col-0 wild type egg extract* PRJNA602727 57638525 0.7945 2020/1/23 GSM4282457 cif1-2_cif2-2_100nM_CIF2_treatment_for_120min_batch1 root Col-0 cif1-2_cif2-2 (both are CRISPR alleles) 100 nM CIF2 for 120 min PRJNA602947 38794928 0.8073 2020/4/22 GSM4282472 cif1-2_cif2-2_100nM_CIF2_treatment_for_30min_batch1 root Col-0 cif1-2_cif2-2 (both are CRISPR alleles) 100 nM CIF2 for 30 min PRJNA602947 38659043 0.8243 2020/4/22 GSM4282494 cif1-2_cif2-2_no_peptide_for_480min_batch1 root Col-0 cif1-2_cif2-2 (both are CRISPR alleles) 100 nM CIF2 for 480 min PRJNA602947 31281847 0.8512 2020/4/22 GSM4282484 cif1-2_cif2-2_no_peptide_for_120min_batch1 root Col-0 cif1-2_cif2-2 (both are CRISPR alleles) no peptide for 120 min PRJNA602947 37444783 0.844 2020/4/22 GSM4282475 cif1-2_cif2-2_no_peptide_for_30min_batch1 root Col-0 cif1-2_cif2-2 (both are CRISPR alleles) no peptide for 30 min PRJNA602947 38072741 0.8403 2020/4/22 GSM4282496 cif1-2_cif2-2_100nM_CIF2_treatment_for_480min_batch2 root Col-0 cif1-2_cif2-2 (both are CRISPR alleles) no peptide for 480 min PRJNA602947 36267260 0.8513 2020/4/22 GSM4282454 sgn3-3_100nM_CIF2_treatment_for_120min_batch1 root Col-0 sgn3-3 (SALK_043282) 100 nM CIF2 for 120 min PRJNA602947 34704017 0.8212 2020/4/22 GSM4282469 sgn3-3_100nM_CIF2_treatment_for_30min_batch1 root Col-0 sgn3-3 (SALK_043282) 100 nM CIF2 for 30 min PRJNA602947 36146303 0.8339 2020/4/22 GSM4282464 sgn3-3_100nM_CIF2_treatment_for_480min_batch1 root Col-0 sgn3-3 (SALK_043282) 100 nM CIF2 for 480 min PRJNA602947 41703106 0.8416 2020/4/22 GSM4282481 sgn3-3_no_peptide_for_120min_batch1 root Col-0 sgn3-3 (SALK_043282) no peptide for 120 min PRJNA602947 29429715 0.8245 2020/4/22 GSM4282502 sgn3-3_no_peptide_for_30min_batch1 root Col-0 sgn3-3 (SALK_043282) no peptide for 30 min PRJNA602947 42052430 0.8314 2020/4/22 GSM4282491 sgn3-3_no_peptide_for_480min_batch1 root Col-0 sgn3-3 (SALK_043282) no peptide for 480 min PRJNA602947 38389079 0.8514 2020/4/22 GSM4282451 WT_100nM_CIF2_treatment_for_120min_batch1 root Col-0 wild type 100 nM CIF2 for 120 min PRJNA602947 39337960 0.8035 2020/4/22 GSM4282461 WT_100nM_CIF2_treatment_for_30min_batch1 root Col-0 wild type 100 nM CIF2 for 30 min PRJNA602947 42807640 0.8225 2020/4/22 GSM4282460 WT_100nM_CIF2_treatment_for_480min_batch1 root Col-0 wild type 100 nM CIF2 for 480 min PRJNA602947 36116368 0.824 2020/4/22 GSM4282478 WT_no_peptide_for_120min_batch1 root Col-0 wild type no peptide for 120 min PRJNA602947 33243743 0.8369 2020/4/22 GSM4282499 WT_no_peptide_for_30min_batch1 root Col-0 wild type no peptide for 30 min PRJNA602947 28072201 0.8486 2020/4/22 GSM4282488 WT_no_peptide_for_480min_batch1 root Col-0 wild type no peptide for 480 min PRJNA602947 35221665 0.8423 2020/4/22 GSM4293394 Col_1 rosette Col-0 wild type -- PRJNA604567 34117695 0.885 2020/4/1 SRX7688071 TuMV 1 leaf Col-0 -- 1 week aHter TuMV PRJNA605241 11300320 0.7561 2020/2/7 SRX7688068 Mock Aphid 1 leaf Col-0 -- Mock Inoculation 48Hrs Mpersicae Heeding 15 aphids PRJNA605241 10970887 0.8722 2020/2/7 SRX7754837 atmc1_1 Leaf Col-0 atmc1 -- PRJNA607634 28686112 0.9077 2020/2/20 SRX7754834 WT_1 Leaf Col-0 wild type -- PRJNA607634 20050834 0.8735 2020/2/20 SRX7764739 151625A_ago2_S_Biological_replicate_1 leave Col-0 ago2 mutant Sclerotinia sclerotiorum PRJNA607858 23107634 0.8867 2020/3/25 SRX7764738 151625A_ago2_Biological_replicate_3 leave Col-0 ago2 mutant mock PRJNA607858 24580426 0.9013 2020/3/25 SRX7764737 151625A_Col_S_Biological_replicate_3 leave Col-0 wild type Sclerotinia sclerotiorum PRJNA607858 18164415 0.8715 2020/3/25 SRX7764742 151625A_Col_0_Biological_replicate_1 leave Col-0 wild type mock PRJNA607858 19789978 0.9021 2020/3/25 SRX7869423 ktn1-S1 root tips Col-0 ktn1 -- PRJNA610935 22929091 0.9409 2020/3/8 SRX7868578 ktn1-ABA-S1 root tips Col-0 ktn1 ABA PRJNA610935 22883001 0.9436 2020/3/7 SRX7869410 ktn1-CK1 root tips Col-0 ktn1 CK PRJNA610935 23000584 0.9403 2020/3/8 SRX7869420 Col-0-S1 root tips Col-0 wild type -- PRJNA610935 21260112 0.9463 2020/3/8 SRX7868575 Col-0-ABA-S1 root tips Col-0 wild type ABA PRJNA610935 21186432 0.9479 2020/3/7 SRX7869407 Col-0-CK1 root tips Col-0 wild type CK PRJNA610935 21100343 0.9432 2020/3/8 GSM4404118 Pro35SARR1 rep1 root Col-0 Pro35SARR1 -- PRJNA611622 10075240 0.9356 2020/3/11 GSM4404116 arr1 rep1 root Col-0 arr1 -- PRJNA611622 9625890 0.9232 2020/3/11 GSM4404114 WT rep1 root Col-0 wild type -- PRJNA611622 9541020 0.9318 2020/3/11 SRX7913300 At_WW_1 leaf Col-0 -- Control PRJNA612654 7242687 0.9301 2020/3/15 SRX7913302 At_HN_2 leaf Col-0 -- pretreated with H2O2 and NaCl treated 12h PRJNA612654 12196313 0.9349 2020/3/15 SRX7913308 At_HW_1 leaf Col-0 -- pretreated with H2O2 and water treated 12h PRJNA612654 10522419 0.9288 2020/3/15 SRX7913305 At_WN_1 leaf Col-0 -- pretreated with water and NaCl treated 12h PRJNA612654 8300576 0.9352 2020/3/15 SRX7949143 Col-0_RNA-seq_rp1 leaf Col-0 -- -- PRJNA613247 24207112 0.7575 2020/3/19 SRX7949151 amiR-PAG1_RNA-seq_rp1 leaf Col-0 -- -- PRJNA613247 25032646 0.7693 2020/3/19 SRX7949154 se-2_RNA-seq_rp1 leaf Col-0 -- -- PRJNA613247 23645521 0.7857 2020/3/19 GSM4422802 t45 col 13 shoot tip Col-0 wild type 45 minutes after 90 degree gravistimulation PRJNA613599 24239134 0.9273 2020/3/25 SRX145599 ctr1-1 air 3-day, replicate 2 seedlings Col-0 ctr1-1 -- SRP012592 30395294 0.8101 2012/10/19 SRX145601 ein2 S645A air 3-day replicate 1 seedlings Col-0 ein2 -- SRP012592 29082199 0.8418 2012/10/19 SRX145572 Col-0 ethylene 3-day replicate 1 seedlings Col-0 wild type ethylene SRP012592 35411849 0.8565 2012/10/19