Sample Title Project Tissue Organism Cultivar Genotype Treatment TotalReads UniqelyMappedRate PMID ReleaseDate DRX012209 Cd_0hr_root PRJDB2154 root Oryza sativa Japonica Group -- -- Cd 0hr 3336496 0.8066 -- 6/10/2014 DRX012214 Cd_0hr_shoot PRJDB2154 shoot Oryza sativa Japonica Group -- -- Cd 0hr 4237607 0.9349 -- 6/10/2014 DRX012216 Cd_1hr_shoot PRJDB2154 shoot Oryza sativa Japonica Group -- -- Cd 1hr 4068312 0.9329 -- 6/10/2014 DRX012218 Cd_24hr_shoot PRJDB2154 shoot Oryza sativa Japonica Group -- -- Cd 24hr 3492029 0.8497 -- 6/10/2014 DRX005894 root control sample for ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- control 6930792 0.858 -- 11/25/2015 DRX005928 root control sample for Developmental Time 1 hour after PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- control 1h 7505964 0.7367 -- 11/25/2015 DRX005904 root under 1 day after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 1day 7073444 0.7836 -- 11/25/2015 DRX005789 root under 1 day after Cold stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Cold 1day 4706230 0.9604 -- 11/25/2015 DRX005753 root under 1 day after Low Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- low cadmium 1day 6945088 0.7436 -- 11/25/2015 DRX005804 root under 1 hour after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 1h 6859844 0.7212 -- 11/25/2015 DRX005872 root under 1 hour after JA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- JA 1h 8654225 0.7192 -- 11/25/2015 DRX005763 root under 10 days after VeryLow Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- verylow cadmium 10day 4559237 0.7057 -- 11/25/2015 DRX005902 root under 12 hours after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 12h 11056206 0.7383 -- 11/25/2015 DRX005810 root under 12 hours after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 12h 7413295 0.716 -- 11/25/2015 DRX005830 root under 12 hours after Osmotic stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Osmotic 12h 9508017 0.7868 -- 11/25/2015 DRX005898 root under 3 hours after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 3h 8996022 0.8002 -- 11/25/2015 DRX005783 root under 3 hours after Cold stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Cold 3h 4615446 0.7459 -- 11/25/2015 DRX005850 root under 3 hours after Drought stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- drought 3h 8843478 0.9415 -- 11/25/2015 DRX005806 root under 3 hours after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 3h 5024391 0.7403 -- 11/25/2015 DRX005755 root under 4 days after Low Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- low cadmium 4day 5929604 0.7903 -- 11/25/2015 DRX005761 root under 4 days after VeryLow Cadmium stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- verylow cadmium 4day 6183548 0.7517 -- 11/25/2015 DRX005900 root under 6 hours after ABA treatment PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- ABA 6h 9485861 0.8017 -- 11/25/2015 DRX005808 root under 6 hours after Flood stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Flood 6h 6285042 0.7371 -- 11/25/2015 DRX005828 root under 6 hours after Osmotic stress PRJDB2600 root Oryza sativa Japonica Group Nipponbare -- Osmotic 6h 8431765 0.7933 -- 11/25/2015 DRX005882 shoot control sample for ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 9910727 0.8501 -- 11/25/2015 DRX005906 shoot control sample for Developmental Time 0 hour after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 8057663 0.8008 -- 11/25/2015 DRX005916 shoot control sample for Developmental Time 1 day after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 1day 17877588 0.792 -- 11/25/2015 DRX005908 shoot control sample for Developmental Time 1 hour after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 1h 7715699 0.7978 -- 11/25/2015 DRX005924 shoot control sample for Developmental Time 10 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 10day 6653471 0.7942 -- 11/25/2015 DRX005914 shoot control sample for Developmental Time 12 hours after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 12h 9781326 0.8036 -- 11/25/2015 DRX005918 shoot control sample for Developmental Time 3 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 3day 19985909 0.9093 -- 11/25/2015 DRX005910 shoot control sample for Developmental Time 3 hours after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 3h 7406558 0.8095 -- 11/25/2015 DRX005920 shoot control sample for Developmental Time 4 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 4day 7198193 0.803 -- 11/25/2015 DRX005922 shoot control sample for Developmental Time 5 days after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 5day 10520925 0.7605 -- 11/25/2015 DRX005912 shoot control sample for Developmental Time 6 hours after PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 6h 17425998 0.91 -- 11/25/2015 DRX005832 shoot control sample for Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 11939906 0.8627 -- 11/25/2015 DRX005858 shoot control sample for JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- control 10197499 0.8493 -- 11/25/2015 DRX005844 shoot under 1 day after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 1day 5709239 0.8872 -- 11/25/2015 DRX005799 shoot under 1 day after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 1day 7887355 0.9644 -- 11/25/2015 DRX005868 shoot under 1 day after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 1day 5475335 0.8826 -- 11/25/2015 DRX005738 shoot under 1 day after Low Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- low cadmium 1day 4693099 0.8035 -- 11/25/2015 DRX005744 shoot under 1 day after VeryLow Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- verylow cadmium 1day 8003905 0.7709 -- 11/25/2015 DRX005884 shoot under 1 hour after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 1h 6153995 0.8751 -- 11/25/2015 DRX005834 shoot under 1 hour after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 1h 5656400 0.8834 -- 11/25/2015 DRX005791 shoot under 1 hour after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 1h 4984641 0.8072 -- 11/25/2015 DRX005860 shoot under 1 hour after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 1h 6217137 0.8735 -- 11/25/2015 DRX005816 shoot under 1 hour after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 1h 6675112 0.8696 -- 11/25/2015 DRX005890 shoot under 12 hours after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 12h 9167364 0.8694 -- 11/25/2015 DRX005841 shoot under 12 hours after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 12h 7396658 0.8772 -- 11/25/2015 DRX005797 shoot under 12 hours after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 12h 5545031 0.7858 -- 11/25/2015 DRX005866 shoot under 12 hours after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 12h 9065045 0.8718 -- 11/25/2015 DRX005822 shoot under 12 hours after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 12h 11272939 0.8625 -- 11/25/2015 DRX005802 shoot under 3 days after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 3day 5911042 0.9219 -- 11/25/2015 DRX005886 shoot under 3 hours after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 3h 7188958 0.8624 -- 11/25/2015 DRX005862 shoot under 3 hours after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 3h 8125866 0.8666 -- 11/25/2015 DRX005818 shoot under 3 hours after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 3h 8724965 0.8647 -- 11/25/2015 DRX005740 shoot under 4 days after Low Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- low cadmium 4day 6055866 0.8116 -- 11/25/2015 DRX005746 shoot under 4 days after VeryLow Cadmium stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- verylow cadmium 4day 3942962 0.7899 -- 11/25/2015 DRX005888 shoot under 6 hours after ABA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- ABA 6h 8354169 0.8567 -- 11/25/2015 DRX005775 shoot under 6 hours after Cold stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Cold 6h 5758572 0.7305 -- 11/25/2015 DRX005839 shoot under 6 hours after Drought stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- drought 6h 10433330 0.8649 -- 11/25/2015 DRX005795 shoot under 6 hours after Flood stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Flood 6h 6111132 0.7596 -- 11/25/2015 DRX005864 shoot under 6 hours after JA treatment PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- JA 6h 9004063 0.858 -- 11/25/2015 DRX005820 shoot under 6 hours after Osmotic stress PRJDB2600 shoot Oryza sativa Japonica Group Nipponbare -- Osmotic 6h 8827585 0.8561 -- 11/25/2015 DRX002033 IAC 25_root_0day PRJDB2658 root Oryza sativa Japonica Group IAC 25 -- control 4627099 0.8552 -- 5/14/2014 DRX002037 IAC 25_root_22day PRJDB2658 root Oryza sativa Japonica Group IAC 25 -- Pi- 22day 5287887 0.8431 -- 5/14/2014 DRX002041 IAC 25_shoot_0day PRJDB2658 shoot Oryza sativa Japonica Group IAC 25 -- control 7138732 0.7848 -- 5/14/2014 DRX002044 IAC 25_shoot_22day PRJDB2658 shoot Oryza sativa Japonica Group IAC 25 -- Pi- 22day 7918695 0.866 -- 5/14/2014 DRX002019 Nipponbare_root_0day PRJDB2658 root Oryza sativa Japonica Group Nipponbare -- control 5320625 0.8343 -- 5/14/2014 DRX002023 Nipponbare_root_22day PRJDB2658 root Oryza sativa Japonica Group Nipponbare -- Pi- 22day 6121916 0.8016 -- 5/14/2014 DRX002027 Nipponbare_shoot_0day PRJDB2658 shoot Oryza sativa Japonica Group Nipponbare -- control 4993676 0.8986 -- 5/14/2014 DRX002030 Nipponbare_shoot_22day PRJDB2658 shoot Oryza sativa Japonica Group Nipponbare -- Pi- 22day 6419025 0.9009 -- 5/14/2014 DRX002047 Vary Lava 701_root_0day PRJDB2658 root Oryza sativa Japonica Group Vary Lava 701 -- control 5263394 0.851 -- 5/14/2014 DRX002051 Vary Lava 701_root_22day PRJDB2658 root Oryza sativa Japonica Group Vary Lava 701 -- Pi- 22day 6272014 0.8273 -- 5/14/2014 DRX002055 Vary Lava 701_shoot_0day PRJDB2658 shoot Oryza sativa Japonica Group Vary Lava 701 -- control 5443323 0.882 -- 5/14/2014 DRX002058 Vary Lava 701_shoot_22day PRJDB2658 shoot Oryza sativa Japonica Group Vary Lava 701 -- Pi- 22day 6777320 0.7799 -- 5/14/2014 DRX057388 arbuscular mycorrhizal (AM) PRJDB4933 root Oryza sativa Japonica Group Nipponbare -- arbuscular mycorrhizal (AM) 12292014 0.913 -- 1/26/2018 DRX057390 non-mycorrhizal (NM) PRJDB4933 root Oryza sativa Japonica Group Nipponbare -- control 13087811 0.9213 -- 1/26/2018 SRX612565 MET1-2_Mm_heterozygote PRJNA253163 shoot Oryza sativa Japonica Group Nipponbare MET1-2_Mm -- 49495138 0.9284 25002488 7/24/2014 SRX612564 MET1-2_WT PRJNA253163 shoot Oryza sativa Japonica Group Nipponbare wild type -- 60883471 0.916 25002488 7/24/2014 SRX612566 MET1-2_mm_homozygote PRJNA253163 shoot Oryza sativa Japonica Group Nipponbare met1-2 mutrant -- 43890731 0.9268 25002488 7/24/2014 SRX736213 Rice_BA2h-Root-Rep3 PRJNA264298 root Oryza sativa Japonica Group Nipponbare -- 6-benzylaminopurine 2hrs 46376460 0.9426 -- 8/10/2016 SRX739680 Nipponbare leaf PRJNA264731 leaf Oryza sativa Japonica Group Nipponbare -- -- 62515482 0.9621 29158416 10/23/2014 SRX831137 2X4_En_RNA Hybrids rice endosperm which diploid as female parent and autotetraploid as male parent RNA PRJNA271246 endosperm Oryza sativa Japonica Group 2428 -- -- 64193038 0.8397 -- 1/6/2016 SRX831134 4X_En_RNA Diploid rice 02428 its isogenic autotetraploids endosperm RNA PRJNA271246 endosperm Oryza sativa Japonica Group 2428 -- -- 68361206 0.8744 -- 1/6/2016 SRX864649 Cadmium treated 1 hour 100 uM cadmium PRJNA273178 leaf Oryza sativa Japonica Group japonica -- 100 uM cadmium 1 hour 25267247 0.936 -- 2/3/2016 SRX864596 Cadmium treated 1 hour 100 uM cadmium PRJNA273178 root Oryza sativa Japonica Group japonica -- 100 uM cadmium 1 hour 27680251 0.899 -- 2/3/2016 SRX864604 untreated 0 hour PRJNA273178 leaf Oryza sativa Japonica Group japonica -- untreated 0 hour 25622129 0.9364 -- 2/3/2016 SRX864565 untreated 0 hour PRJNA273178 root Oryza sativa Japonica Group japonica -- untreated 0 hour 27044522 0.7971 -- 2/3/2016 SRX864605 untreated 1 hour PRJNA273178 leaf Oryza sativa Japonica Group japonica -- untreated 1 hour 25080450 0.9352 -- 2/3/2016 SRX864584 untreated 1 hour PRJNA273178 root Oryza sativa Japonica Group japonica -- untreated 1 hour 30053131 0.8287 -- 2/3/2016 SRX978709 48 hrs after inoculation with B8-12 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with B8-12 24524435 0.9511 26257749 5/1/2015 SRX978703 48 hrs after inoculation with BLS279 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with BLS279 38356009 0.9559 26257749 5/1/2015 SRX978706 48 hrs after inoculation with CFBP2286 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with CFBP2286 14383864 0.9518 26257749 5/1/2015 SRX978724 48 hrs after inoculation with CFBP7341 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with CFBP7341 40501929 0.9613 26257749 5/1/2015 SRX978727 48 hrs after inoculation with CFBP7342 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with CFBP7342 34534609 0.9569 26257749 5/1/2015 SRX978715 48 hrs after inoculation with RS105 PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- 48 hrs after inoculation with RS105 42745641 0.9514 26257749 5/1/2015 SRX978730 48 hrs after mock-inoculation PRJNA280380 leaf Oryza sativa Japonica Group Nipponbare -- mock 26656102 0.9526 26257749 5/1/2015 SRX1484754 coleoptileplus 1hr shade PRJNA306090 coleoptile Oryza sativa Japonica Group Nipponbare -- plus 1hr shade 17485625 0.7456 26888633 12/19/2016 SRX1484758 the first leafplus 1hr shade PRJNA306090 the first leaf Oryza sativa Japonica Group Nipponbare -- plus 1hr shade 22851965 0.7254 26888633 12/19/2016 SRX1484760 the first leafplus 1hr white light PRJNA306090 the first leaf Oryza sativa Japonica Group Nipponbare -- plus 1hr white light 15976140 0.7753 26888633 12/19/2016 SRX1488636 elongating primary branch meristem plus axillary meristem PRJNA306226 elongating primary branch meristem plus axillary meristem Oryza sativa Japonica Group Nipponbare -- -- 73195534 0.772 26932536 3/4/2016 SRX1618253 Long Day Drought PRJNA314526 leaf Oryza sativa Japonica Group Nipponbare -- Long Day Drought 33738285 0.889 27111837 3/1/2017 SRX1618257 Short Day Drought PRJNA314526 leaf Oryza sativa Japonica Group Nipponbare -- Short Day Drought 32798250 0.9619 27111837 3/1/2017 SRX1618255 Short Day Watered PRJNA314526 leaf Oryza sativa Japonica Group Nipponbare -- Short Day Watered 34717753 0.8996 27111837 3/1/2017 SRX1687067 Lr34 transgenic line 16 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 31828141 0.95 30913300 12/31/2017 SRX1687079 Lr34 transgenic line 16 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 37518379 0.9392 30913300 12/31/2017 SRX1687082 Lr34 transgenic line 5 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 34223542 0.9481 30913300 12/31/2017 SRX1687072 Lr34 transgenic line 5 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare LR34res transgenic line -- 35021495 0.9391 30913300 12/31/2017 SRX1687085 wild-type line 16 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare wild type -- 32943065 0.9479 30913300 12/31/2017 SRX1687075 wild-type line 16 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare wild type -- 44809751 0.9436 30913300 12/31/2017 SRX1687065 wild-type line 5 PRJNA317706 4th leaf Oryza sativa Japonica Group Nipponbare wild type -- 33990421 0.7542 30913300 12/31/2017 SRX1687069 wild-type line 5 PRJNA317706 flag leaf Oryza sativa Japonica Group Nipponbare wild type -- 30667110 0.9311 30913300 12/31/2017 SRX1742540 EIP1_OX leaf PRJNA320536 leaf Oryza sativa Japonica Group ZH11 EIP1_OX -- 27129213 0.9014 27978435 2/6/2017 SRX1742538 ebr1 mutant leaf PRJNA320536 leaf Oryza sativa Japonica Group ZH11 ebr1 mutant -- 28257562 0.882 27978435 2/6/2017 SRX1742536 wild type leaf PRJNA320536 leaf Oryza sativa Japonica Group ZH11 wild type -- 28242999 0.9091 27978435 2/6/2017 SRX1760732 osddm1a/1b mutant seedling PRJNA321532 seedling Oryza sativa Japonica Group DongJin osddm1a/1b mutant -- 35700950 0.9247 27208249 6/13/2016 SRX1760730 wild type seedling PRJNA321532 seedling Oryza sativa Japonica Group DongJin wild type -- 26823185 0.9307 27208249 6/13/2016 SRX1828640 Four leaf stage seedling modd2 mutant PRJNA324688 Up groud part Oryza sativa Japonica Group DongJin modd2 mutant -- 12139896 0.8912 27468891 9/7/2016 SRX1828642 Four leaf stage seedling wild type PRJNA324688 Up groud part Oryza sativa Japonica Group DongJin wild type -- 12143816 0.8941 27468891 9/7/2016 SRX1899055 anthers phya mutant PRJNA327987 anther Oryza sativa Japonica Group Nipponbare phya mutant -- 8349302 0.9401 28743949 7/3/2017 SRX1899052 anthers phya phyb mutant PRJNA327987 anther Oryza sativa Japonica Group Nipponbare phya phyb mutant -- 10601576 0.9317 28743949 7/3/2017 SRX1899058 anthers phyb mutant PRJNA327987 anther Oryza sativa Japonica Group Nipponbare phyb mutant -- 9988189 0.8385 28743949 7/3/2017 SRX1899049 anthers wild type PRJNA327987 anther Oryza sativa Japonica Group Nipponbare wild type -- 9436855 0.9305 28743949 7/3/2017 SRX1983462 wild type_root tips PRJNA335701 root tip Oryza sativa Japonica Group Hwayoung wild type -- 22586309 0.9372 28830102 6/22/2017 SRX1983460 wox11 mutant_root tips PRJNA335701 root tip Oryza sativa Japonica Group Hwayoung wox11 mutant -- 43807682 0.925 28830102 6/22/2017 SRX2273218 2nd leaf, DAH12 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 41240765 0.9213 28821707 9/22/2017 SRX2273221 2nd leaf, DAH20 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 18194049 0.9053 28821707 9/22/2017 SRX2273224 2nd leaf, DAH28 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 43263150 0.8943 28821707 9/22/2017 SRX2273228 2nd leaf, DAH36 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 12252385 0.8811 28821707 9/22/2017 SRX2273215 2nd leaf, DAH4 PRJNA350792 2nd leaf Oryza sativa Japonica Group Dongjin -- -- 12555448 0.8619 28821707 9/22/2017 SRX2273200 Flag leaf, DAH12 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 35538139 0.8952 28821707 9/22/2017 SRX2273203 Flag leaf, DAH20 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 62280681 0.8193 28821707 9/22/2017 SRX2273206 Flag leaf, DAH28 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 15361557 0.8015 28821707 9/22/2017 SRX2273209 Flag leaf, DAH36 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 24410810 0.8682 28821707 9/22/2017 SRX2273197 Flag leaf, DAH4 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 32130138 0.7301 28821707 9/22/2017 SRX2273212 Flag leaf, DAH44 PRJNA350792 flag leaf Oryza sativa Japonica Group Dongjin -- -- 26754053 0.8849 28821707 9/22/2017 SRX2373991 0 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Nipponbare -- 0 Days in Short Day 25588562 0.9582 30936438 11/30/2018 SRX2374007 0 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Taichung 65 -- 0 Days in Short Day 17200329 0.9486 30936438 11/30/2018 SRX2374004 12 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Nipponbare -- 12 Days in Short Day 19122887 0.9547 30936438 11/30/2018 SRX2374009 4 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Taichung 65 -- 4 Days in Short Day 21037227 0.953 30936438 11/30/2018 SRX2373999 8 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Nipponbare -- 8 Days in Short Day 6394087 0.9504 30936438 11/30/2018 SRX2374013 8 Days in Short Day PRJNA354868 shoot apical meristems Oryza sativa Japonica Group Taichung 65 -- 8 Days in Short Day 18370968 0.9603 30936438 11/30/2018 SRX2441452 M. oryzae infection 0h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- mock 13562797 0.9248 30825020 9/1/2017 SRX2441447 M. oryzae infection FJ87_24h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection FJ87_24h 10896268 0.9228 30825020 9/1/2017 SRX2441457 M. oryzae infection FJ87_48h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection FJ87_48h 13211565 0.9208 30825020 9/1/2017 SRX2441450 M. oryzae infection GY11_24h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection GY11_24h 11681273 0.9145 30825020 9/1/2017 SRX2441464 M. oryzae infection GY11_48h PRJNA358135 leaf Oryza sativa Japonica Group Nipponbare -- M. oryzae infection GY11_48h 15084534 0.9225 30825020 9/1/2017 SRX2440461 auxin (50µM 2,4-D) 1 day PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- auxin (50µM 2,4-D) 1 day 24807997 0.9407 27891144 1/2/2019 SRX2440473 auxin (50µM 2,4-D) 14 days PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- auxin (50µM 2,4-D) 14 days 28367352 0.8997 27891144 1/2/2019 SRX2440467 auxin (50µM 2,4-D) 7 days PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- auxin (50µM 2,4-D) 7 days 24752940 0.9128 27891144 1/2/2019 SRX2440458 control 1 day PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- control 1 day 25076818 0.9311 27891144 1/2/2019 SRX2440464 control 7 days PRJNA358595 root Oryza sativa Japonica Group Nipponbare -- control 7 days 32306428 0.9009 27891144 1/2/2019 SRX2682068 Full nutrient PRJNA380641 shoot Oryza sativa Japonica Group Nipponbare -- Full nutrient 65082473 0.8939 -- 3/27/2018 SRX2823835 Grain PRJNA386888 caryopsis Oryza sativa Japonica Group Nipponbare GSK5-/- -- 31165051 0.896 -- 5/19/2017 SRX3041037 AG1 IA strain of R. solani at 12h PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- AG1 IA strain of R. solani at 12h 28587331 0.7929 28861102 7/26/2017 SRX3041042 AG1 IA strain of R. solani at 24h PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- AG1 IA strain of R. solani at 24h 26766211 0.7994 28861102 7/26/2017 SRX3041035 AG1 IA strain of R. solani at 36h PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- AG1 IA strain of R. solani at 36h 27854421 0.7348 28861102 7/26/2017 SRX3041040 leaf control PRJNA392837 leaf Oryza sativa Japonica Group Lemont -- mock 29300084 0.8414 28861102 7/26/2017 SRX3070797 OsSAMS1 CRISPR/Cas9 transgene PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 OsSAMS1 KO -- 12693273 0.8937 28994391 10/30/2017 SRX3070794 OsSAMS1 overexpression transgene PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 OsSAMS1 OX -- 12585489 0.8939 28994391 10/30/2017 SRX3070789 RDV-infected (inoculated with insect carrying RDV) PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 -- RDV infected 12948842 0.7145 28994391 10/30/2017 SRX3070786 mock (inoculated with virus free insect) PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 -- mock 15442940 0.8403 28994391 10/30/2017 SRX3070792 wild type PRJNA397572 aboveground part of plant Oryza sativa Japonica Group Zhonghua 11 wild type -- 12695178 0.9043 28994391 10/30/2017 SRX3098662 Wild type rice PRJNA398554 young panicle Oryza sativa Japonica Group Zhonghua 11 wild type -- 20353533 0.8857 30652247 4/12/2019 SRX3098665 dcl3b knockdown mutant rice PRJNA398554 young panicle Oryza sativa Japonica Group Zhonghua 11 dcl3b KO -- 31282722 0.8907 30652247 4/12/2019 SRX3773580 nitrogen deficiency PRJNA437192 root Oryza sativa Japonica Group Koshihikari -- N- 4555126 0.7745 -- 3/8/2018 SRX3773594 rich nutrient PRJNA437192 root Oryza sativa Japonica Group Koshihikari -- control 4245247 0.7789 -- 3/8/2018 SRX3773934 osipms1 mutant PRJNA437217 seed Oryza sativa Japonica Group japonica osipms1 mutant -- 30816921 0.8678 -- 3/8/2018 SRX3985211 infloresence control PRJNA449939 infloresence Oryza sativa Japonica Group Nipponbare -- control 25888403 0.8374 -- 4/22/2018 SRX3985215 infloresence drought stress PRJNA449939 infloresence Oryza sativa Japonica Group Nipponbare -- drought stress 14046851 0.8652 -- 4/22/2018 SRX4130188 th1 mutant young panicle PRJNA470824 young panicle Oryza sativa Japonica Group Nipponbare th1 mutant -- 22081378 0.8476 30725309 5/27/2018 SRX4130191 wild type young panicle PRJNA470824 young panicle Oryza sativa Japonica Group Nipponbare wild type -- 25226061 0.8892 30725309 5/27/2018 SRX4647163 nf-yc11 mutant PRJNA489631 endosperm Oryza sativa Japonica Group ZH11* nf-yc11 mutant -- 21805054 0.8749 31211389 8/27/2019 SRX4647160 wildtype PRJNA489631 endosperm Oryza sativa Japonica Group ZH11* wild type -- 31672438 0.8582 31211389 8/27/2019 SRX5173466 OX-1 OsbZIP81 PRJNA510886 seedling Oryza sativa Japonica Group Zhonghua 11 OX-1 -- 31566658 0.8332 31086007 6/1/2019 SRX5173463 OX-2 OsbZIP81 PRJNA510886 seedling Oryza sativa Japonica Group Zhonghua 11 OX-2 -- 32476179 0.7987 31086007 6/1/2019 SRX5168470 100percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 100percent_Water_0.625mM_Nitrogen 14048669 0.7694 30914651 2/20/2019 SRX5168471 100percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 100percent_Water_1.25mM_Nitrogen 13625804 0.8075 30914651 2/20/2019 SRX5168473 100percent_Water_2.5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 100percent_Water_2.5mM_Nitrogen 15486458 0.8235 30914651 2/20/2019 SRX5168609 12.5percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_0.625mM_Nitrogen 13294174 0.8944 30914651 2/20/2019 SRX5168624 12.5percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_1.25mM_Nitrogen 8486941 0.8783 30914651 2/20/2019 SRX5168623 12.5percent_Water_2.5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_2.5mM_Nitrogen 9959556 0.8576 30914651 2/20/2019 SRX5168611 12.5percent_Water_5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 12.5percent_Water_5mM_Nitrogen 15263998 0.9211 30914651 2/20/2019 SRX5168706 25percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 25percent_Water_0.625mM_Nitrogen 13485142 0.9336 30914651 2/20/2019 SRX5168704 25percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 25percent_Water_1.25mM_Nitrogen 16342066 0.8727 30914651 2/20/2019 SRX5168445 25percent_Water_2.5mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 25percent_Water_2.5mM_Nitrogen 13004608 0.8214 30914651 2/20/2019 SRX5168539 50percent_Water_0.625mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 50percent_Water_0.625mM_Nitrogen 17448763 0.8251 30914651 2/20/2019 SRX5168540 50percent_Water_1.25mM_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- 50percent_Water_1.25mM_Nitrogen 13999124 0.8062 30914651 2/20/2019 SRX5168646 Low_Water_High_Nitrogen PRJNA510920 leaf Oryza sativa Japonica Group Nipponbare -- Low_Water_High_Nitrogen 12061701 0.7389 30914651 2/20/2019 SRX5411264 NPB rice cultivar PRJNA523846 Leaves Oryza sativa Japonica Group NPB -- Inoculated with Pyricularia oryzae 24447292 0.8871 33043566 2/25/2019 SRX5411255 NPB rice cultivar PRJNA523846 Leaves Oryza sativa Japonica Group NPB -- control 29958420 0.8845 33043566 2/25/2019 SRX5538645 SNAC1-OE PRJNA527848 seedling Oryza sativa Japonica Group ZH11 SNAC1-OE drought 38344866 0.947 31402926 3/20/2019 SRX5538651 ZH11-WT PRJNA527848 seedling Oryza sativa Japonica Group ZH11 wild type drought 42513528 0.9472 31402926 3/20/2019 SRX6855707 control PRJNA565146 straw Oryza sativa Japonica Group japonica -- control 109262433 0.9215 31621135;32513834 9/17/2019 SRX6855710 moderate soil drying PRJNA565146 straw Oryza sativa Japonica Group japonica -- moderate soil drying 90267643 0.9009 31621135;32513834 9/17/2019 DRX021289 cerk1-Mock-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 cerk1 mutant chitin receptor gene transcected 13484127 0.8002 25231970 2/25/2015 DRX021292 cerk1-Myc-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 cerk1 mutant chitin receptor gene transcected, Myc-LCO (arbuscular mycorrhizal (AM) fungus-secreted substance)-treated 11232194 0.9042 25231970 2/25/2015 DRX021286 WT-GN7-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 wild type chitin oligosaccharides (N-acetylchitoheptaose: GN7)-treatted 6612859 0.9188 25231970 2/25/2015 DRX021280 WT-Mock-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 wild type mock 8563991 0.9085 25231970 2/25/2015 DRX021283 WT-Myc-1 PRJDB1490 leaf Oryza sativa Japonica Group Nipponbare BL no. 2 wild type mycorrhizal fungi Myc-infected 7260040 0.8112 25231970 2/25/2015 DRX017638 35S:OSH1-GR +DEX 24h rep1 PRJDB2920 young leaves 1 mm above shoot apices Oryza sativa Japonica Group T65 35S:OSH1-GR DEX 24h 26425861 0.8671 25194027 6/26/2014 DRX017640 WT +DEX 3h rep1 PRJDB2920 young leaves 1 mm above shoot apices Oryza sativa Japonica Group T65 wild type DEX 3h 26537395 0.8325 25194027 6/26/2014 DRX017641 WT +DEX 6h rep1 PRJDB2920 young leaves 1 mm above shoot apices Oryza sativa Japonica Group T65 wild type DEX 6h 22917817 0.851 25194027 6/26/2014 DRX070135 early meiosis eat1 M1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare eat1 mutant -- 20653458 0.9141 -- 1/26/2018 DRX070132 late meiosis eat1 L1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare eat1 mutant -- 19177059 0.9167 -- 1/26/2018 DRX070138 premeiosis eat1 S1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare eat1 mutant -- 20050843 0.9124 -- 1/26/2018 DRX114847 early meiosis mel1 M1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare mel1-1 mutant -- 17135628 0.9198 -- 2/1/2018 DRX114844 late meiosis mel1 L1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare mel1-1 mutant -- 19510457 0.9271 -- 2/1/2018 DRX114850 premeiosis mel1 S1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare mel1-1 mutant -- 18445769 0.8969 -- 2/1/2018 DRX070126 early meiosis WT M1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare wild type -- 22816667 0.9135 -- 1/26/2018 DRX070123 late meiosis WT L1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare wild type -- 18795812 0.9259 -- 1/26/2018 DRX070129 premeiosis WT S1 PRJDB5291 anther Oryza sativa Japonica Group Nipponbare wild type -- 18447170 0.908 -- 1/26/2018 DRX070072 the 4-leaf stage 1 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 1 h post submergence 9500900 0.9075 -- 1/1/2017 DRX070090 the 6-leaf stage 1 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 1 h post submergence 6584777 0.912 -- 1/1/2017 DRX070081 the 4-leaf stage 12 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 12 h post submergence 8521861 0.8931 -- 1/1/2017 DRX070099 the 6-leaf stage 12 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 12 h post submergence 9473559 0.9177 -- 1/1/2017 DRX070084 the 4-leaf stage 24 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 24 h post submergence 7627553 0.8822 -- 1/1/2017 DRX070102 the 6-leaf stage 24 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 24 h post submergence 7394886 0.9203 -- 1/1/2017 DRX070075 the 4-leaf stage 3 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 3 h post submergence 7936717 0.9184 -- 1/1/2017 DRX070093 the 6-leaf stage 3 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 3 h post submergence 5588520 0.9192 -- 1/1/2017 DRX070078 the 4-leaf stage 6 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 6 h post submergence 7251305 0.9218 -- 1/1/2017 DRX070096 the 6-leaf stage 6 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- 6 h post submergence 7577865 0.9067 -- 1/1/2017 DRX070069 the 4-leaf stage 0 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- control 5908732 0.9115 -- 1/1/2017 DRX070087 the 6-leaf stage 0 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group C9285 -- control 7029193 0.9135 -- 1/1/2017 DRX070108 the 6-leaf stage 1 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 1 h post submergence 7969976 0.9456 -- 1/1/2017 DRX070117 the 6-leaf stage 12 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 12 h post submergence 7586161 0.9292 -- 1/1/2017 DRX070120 the 6-leaf stage 24 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 24 h post submergence 15541928 0.8621 -- 1/1/2017 DRX070111 the 6-leaf stage 3 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 3 h post submergence 5581754 0.9205 -- 1/1/2017 DRX070114 the 6-leaf stage 6 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- 6 h post submergence 7058654 0.933 -- 1/1/2017 DRX070105 the 6-leaf stage 0 h post submergence replicate 1 PRJDB5294 shoot Oryza sativa Japonica Group Taichung-65 -- control 8162369 0.9382 -- 1/1/2017 DRX082822 7_MT2_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown JA-treated 17510389 0.9679 28067270 3/11/2019 DRX082824 8_MT9_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown JA-treated 16273773 0.9638 28067270 3/11/2019 DRX082814 3_MT2_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown control 15192518 0.9684 28067270 3/11/2019 DRX082816 4_MT9_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari OsMYC2-knockdown control 15853930 0.9672 28067270 3/11/2019 DRX082820 6_VC_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari vector control JA-treated 13889509 0.97 28067270 3/11/2019 DRX082812 2_VC_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari vector control control 15558776 0.9673 28067270 3/11/2019 DRX082818 5_WT_JA1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari wild type JA-treated 15307708 0.9687 28067270 3/11/2019 DRX082810 1_WT_mock1 PRJDB5600 leaf Oryza sativa Japonica Group Nihonmasari wild type control 15579186 0.9699 28067270 3/11/2019 DRX084314 cd01 root 12h 2 PRJDB5677 root Oryza sativa Japonica Group -- -- 0.2uMCd 12h 3997999 0.822 -- 4/14/2019 DRX084316 cd01 root 1h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 0.2uMCd 1h 3169051 0.8367 -- 4/14/2019 DRX084319 cd01 root 24h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 0.2uMCd 24h 4347486 0.7973 -- 4/14/2019 DRX084331 cd1 root 12h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 1uMCd 12h 4363692 0.8581 -- 4/14/2019 DRX084334 cd1 root 1h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 1uMCd 1h 3963281 0.8712 -- 4/14/2019 DRX084337 cd1 root 24h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 1uMCd 24h 4316434 0.7805 -- 4/14/2019 DRX084348 cd50 root 12h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- 50uMCd 12h 3906480 0.7709 -- 4/14/2019 DRX084352 cd50 root 1h 2 PRJDB5677 root Oryza sativa Japonica Group -- -- 50uMCd 1h 3998329 0.7616 -- 4/14/2019 DRX084311 aba root 24h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- ABA 24h 4183208 0.752 -- 4/14/2019 DRX084368 control root 0h 2 PRJDB5677 root Oryza sativa Japonica Group -- -- control root 0h 3233450 0.8681 -- 4/14/2019 DRX084370 control root 12h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- control root 12h 4903543 0.8388 -- 4/14/2019 DRX084373 control root 1h 1 PRJDB5677 root Oryza sativa Japonica Group -- -- control root 1h 2872487 0.8348 -- 4/14/2019 DRX084322 cd01 shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 0.2uMCd 12h 4148735 0.9493 -- 4/14/2019 DRX084325 cd01 shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 0.2uMCd 1h 4654598 0.9654 -- 4/14/2019 DRX084328 cd01 shoot 24h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 0.2uMCd 24h 3935783 0.944 -- 4/14/2019 DRX084340 cd1 shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 1uMCd 12h 3747810 0.949 -- 4/14/2019 DRX084342 cd1 shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 1uMCd 1h 3764004 0.9644 -- 4/14/2019 DRX084345 cd1 shoot 24h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 1uMCd 24h 3050660 0.9271 -- 4/14/2019 DRX084357 cd50 shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 50uMCd 12h 4270399 0.9709 -- 4/14/2019 DRX084360 cd50 shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 50uMCd 1h 4035566 0.9699 -- 4/14/2019 DRX084363 cd50 shoot 24h 2 PRJDB5677 shoot Oryza sativa Japonica Group -- -- 50uMCd 24h 3413463 0.9367 -- 4/14/2019 DRX084378 control shoot 0h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 0h 4195120 0.9655 -- 4/14/2019 DRX084381 control shoot 12h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 12h 3685517 0.9679 -- 4/14/2019 DRX084384 control shoot 1h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 1h 4065130 0.9631 -- 4/14/2019 DRX084387 control shoot 24h 1 PRJDB5677 shoot Oryza sativa Japonica Group -- -- control shoot 24h 3293616 0.9234 -- 4/14/2019 DRX138357 Cap_1 PRJDB7270 -- Oryza sativa Japonica Group OS suspension cell -- -- 21253901 0.8624 -- 9/11/2019 DRX138358 Capless_1 PRJDB7270 -- Oryza sativa Japonica Group OS suspension cell -- -- 59591258 0.9048 -- 9/11/2019 DRX157017 NN_zygote_1 PRJDB7949 zygote Oryza sativa Japonica Group Nipponbare -- -- 23477175 0.7213 30801122 3/19/2019 ERX2120653 E-MTAB-5941:Thaibonnet_10h_1 PRJEB22031 shoot Oryza sativa Japonica Group Thaibonnet -- 10h 10C 27798388 0.8871 29876699 10/14/2017 ERX2120647 E-MTAB-5941:Thaibonnet_00h_1 PRJEB22031 shoot Oryza sativa Japonica Group Thaibonnet -- control 27769812 0.8751 29876699 10/14/2017 ERX2120659 E-MTAB-5941:Volano_02h_1 PRJEB22031 shoot Oryza sativa Japonica Group Volano -- 2h 10C 40844086 0.8606 29876699 10/14/2017 ERX2120656 E-MTAB-5941:Volano_00h_1 PRJEB22031 shoot Oryza sativa Japonica Group Volano -- control 25426009 0.8668 29876699 10/14/2017 ERX3345453 Leaves 7 dpi Bvietnamiensis 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- 7dpi Bvietnamiensis 43862789 0.908 31608089 5/31/2019 ERX3345447 Leaves 7 dpi Pkururiensis 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- 7dpi Pkururiensis 46895520 0.874 31608089 5/31/2019 ERX3345450 Leaves Pphytofirmans 7 dpi 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- 7dpi Pphytofirmans 52174751 0.8936 31608089 5/31/2019 ERX3345263 Leaves 7 dpi Control 1 PRJEB31936 leaf Oryza sativa Japonica Group Nipponbare -- control 38533867 0.8707 31608089 5/31/2019 ERX3345462 Roots 7 dpi Bvietnamiensis 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- 7dpi Bvietnamiensis 51314965 0.8685 31608089 5/31/2019 ERX3345459 Roots 7 dpi Pkururiensis 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- 7dpi Pkururiensis 49275052 0.8739 31608089 5/31/2019 ERX3345465 Roots Pphytofirmans 7 dpi 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- 7dpi Pphytofirmans 40550424 0.8862 31608089 5/31/2019 ERX3345456 Roots 7 dpi Control 1 PRJEB31936 root Oryza sativa Japonica Group Nipponbare -- control 38522573 0.8769 31608089 5/31/2019 SRX103307 Callus_RNAseq_BiologicalReplicate1 PRJNA149055 callus Oryza sativa Japonica Group Nipponbare -- -- 13429779 0.9471 22080597 11/10/2011 SRX335915 root_1h -Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 1h -Pi 32815710 0.7019 24249833 11/20/2013 SRX335945 root_21dd +Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 21d +Pi 21644474 0.7341 24249833 11/20/2013 SRX335949 root_21dd -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 21d -Pi 28485833 0.7049 24249833 11/20/2013 SRX335919 root_21d+1h +Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 21d+1h +Pi 26433489 0.7147 24249833 11/20/2013 SRX335955 root_24h -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 24h -Pi 25204865 0.7605 24249833 11/20/2013 SRX335961 root_3d -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 3d -Pi 27882930 0.7248 24249833 11/20/2013 SRX335963 root_6h +Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 6h +Pi 35282035 0.7209 24249833 11/20/2013 SRX335967 root_6h -Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 6h -Pi 31225411 0.7054 24249833 11/20/2013 SRX335970 root_7d +Pi_r2 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 7d +Pi 29830545 0.7 24249833 11/20/2013 SRX335972 root_7d -Pi_r1 PRJNA215013 root Oryza sativa Japonica Group Nipponbare -- 7d -Pi 33571547 0.7273 24249833 11/20/2013 SRX736223 Rice_Control2h-Root-Rep1 PRJNA264298 root Oryza sativa Japonica Group Nipponbare -- control 54298737 0.9571 -- 8/10/2016 SRX736216 Rice_BA2h-Shoot-Rep1 PRJNA264298 shoot Oryza sativa Japonica Group Nipponbare -- 6-benzylaminopurine 2hrs 44108706 0.9637 -- 8/10/2016 SRX736226 Rice_Control2h-Shoot-Rep1 PRJNA264298 shoot Oryza sativa Japonica Group Nipponbare -- control 37643313 0.9693 -- 8/10/2016 SRX737140 GW6a-4.6 Rep1 PRJNA264408 shoot apical meristem Oryza sativa Japonica Group Nipponbare GW6a-4.6 introgression line -- 7751127 0.865 25535376 2/12/2015 SRX737143 OsglHAT1-OE Rep1 PRJNA264408 shoot apical meristem Oryza sativa Japonica Group Nipponbare OsglHAT1-OE -- 7908388 0.9357 25535376 2/12/2015 SRX737138 Nipponbare Rep1 PRJNA264408 shoot apical meristem Oryza sativa Japonica Group Nipponbare wild type -- 8094179 0.9396 25535376 2/12/2015 SRX844623 WT-Control-1 PRJNA272723 leaf Oryza sativa Japonica Group Nipponbare wild type control 14302686 0.9696 32963469 1/19/2015 SRX844621 WT-Drought-1 PRJNA272723 leaf Oryza sativa Japonica Group Nipponbare wild type drought 14664192 0.9603 32963469 1/19/2015 SRX844815 Oshsfa2e-WW-1 PRJNA272732 leaf Oryza sativa Japonica Group Nipponbare OsHSFA2e loss-of-function control 14038610 0.9694 32963469 1/19/2015 SRX844805 Osbhlh148-WW-1 PRJNA272733 leaf Oryza sativa Japonica Group Nipponbare OsbHLH148 loss-of-function control 10314448 0.9612 32963469 1/19/2015 SRX844803 Osbhlh148-DR-1 PRJNA272733 leaf Oryza sativa Japonica Group Nipponbare OsbHLH148 loss-of-function drought 7472493 0.9671 32963469 1/19/2015 SRX997484 PXO99A with BLS256 Tal11b replicate 1 PRJNA281369 leaf Oryza sativa Japonica Group Nipponbare -- PXO99A with BLS256 Tal11b 18174050 0.9628 26821568 5/1/2015 SRX997480 PXO99A with BLS256 Tal2a replicate 1 PRJNA281369 leaf Oryza sativa Japonica Group Nipponbare -- PXO99A with BLS256 Tal2a 15760262 0.9555 26821568 5/1/2015 SRX997482 PXO99A with dTal280 replicate 1 PRJNA281369 leaf Oryza sativa Japonica Group Nipponbare -- PXO99A with dTal280 29595813 0.944 26821568 5/1/2015 SRX1690265 ABA treated rep1 PRJNA317779 alurone Oryza sativa Japonica Group japonica -- ABA treated 43934073 0.9453 -- 4/11/2017 SRX1689996 control rep1 PRJNA317779 alurone Oryza sativa Japonica Group japonica -- control 31868774 0.9464 -- 4/11/2017 SRX1836773 highCu1 PRJNA325167 root Oryza sativa Japonica Group Nipponbare -- highCu stress 31928883 0.8401 -- 6/28/2016 SRX2545786 OsRootHair1 PRJNA338767 root hair Oryza sativa Japonica Group japonica wild type -- 54148348 0.8725 28487476 5/11/2017 SRX2448847 Control_Replicate 1 PRJNA359218 root Oryza sativa Japonica Group japonica -- control 20505069 0.8561 28491065 6/12/2017 SRX2448849 Drought_2 days_Replicate 1 PRJNA359218 root Oryza sativa Japonica Group japonica -- drought_2 days 24454395 0.8896 28491065 6/12/2017 SRX2448851 Drought_3 days_Replicate 1 PRJNA359218 root Oryza sativa Japonica Group japonica -- drought_3 days 20518718 0.8465 28491065 6/12/2017 SRX2795634 Drought OsbZIP46CA1 Overexpressing line -4 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 OX drought stress 30360815 0.8484 28694815 8/11/2017 SRX2795635 Normal OsbZIP46CA1 Overexpressing line -4 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 OX mock 31102852 0.8606 28694815 8/11/2017 SRX2795642 Drought OsbZIP46CA1 and SAPK6 Co-overexpressing line -125 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 and SAPK6 Co-OX drought stress 36191535 0.8413 28694815 8/11/2017 SRX2795643 Normal OsbZIP46CA1 and SAPK6 Co-overexpressing line -125 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 OsbZIP46CA1 and SAPK6 Co-OX mock 35534927 0.8584 28694815 8/11/2017 SRX2795638 Drought SAPK6 Overexpressing line -19 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 SAPK6 OX drought stress 37052517 0.8498 28694815 8/11/2017 SRX2795639 Normal SAPK6 Overexpressing line -19 PRJNA386172 the second upper leaves Oryza sativa Japonica Group KY131 SAPK6 OX mock 35225129 0.8673 28694815 8/11/2017 SRX3085983 M202(Sub1) - dawn - rep 4 PRJNA397883 shoot Oryza sativa Japonica Group M202 Sub1 introgression line -- 94307981 0.7919 29094353 9/1/2017 SRX3085978 M202(Sub1) - midday - rep 6 PRJNA397883 shoot Oryza sativa Japonica Group M202 Sub1 introgression line -- 45256375 0.778 29094353 9/1/2017 SRX3085974 M202 - dusk - rep 6 PRJNA397883 shoot Oryza sativa Japonica Group M202 wild type -- 37299530 0.7202 29094353 9/1/2017 SRX3085975 M202 - midday - rep 6 PRJNA397883 shoot Oryza sativa Japonica Group M202 wild type -- 28677839 0.8023 29094353 9/1/2017 SRX3085987 M202 - midnight - rep 2 PRJNA397883 shoot Oryza sativa Japonica Group M202 wild type -- 56945776 0.8415 29094353 9/1/2017 SRX3219090 jmj705 replication1 PRJNA412312 2-3 mm shoot apex Oryza sativa Japonica Group HY jmj705 mutant -- 34688837 0.8843 29361035 1/23/2018 SRX3219086 HY replication1 PRJNA412312 2-3 mm shoot apex Oryza sativa Japonica Group HY wild type -- 35663466 0.859 29361035 1/23/2018 SRX3219088 wox11 replication1 PRJNA412312 2-3 mm shoot apex Oryza sativa Japonica Group HY wox11 mutant -- 34711024 0.8521 29361035 1/23/2018 SRX7082828 14 days whole plant after 24hr 300mM NaCl rep1 PRJNA413596 whole plant Oryza sativa Japonica Group japonica -- 24hr 300mM NaCl 22796840 0.8428 32044993 11/1/2019 SRX7082825 14 days whole plant control rep1 PRJNA413596 whole plant Oryza sativa Japonica Group japonica -- control 20966650 0.8592 32044993 11/1/2019 SRX3426390 ZH11-N1 PRJNA420056 shoot Oryza sativa Japonica Group ZH11 wild type control 43367449 0.9069 29312378 2/28/2018 SRX3426393 ZH11-D1 PRJNA420056 shoot Oryza sativa Japonica Group ZH11 wild type drought 41696678 0.8905 29312378 2/28/2018 SRX3510989 Nipponbare_MAI1_24hpi_rep1 PRJNA427491 leaf Oryza sativa Japonica Group Nipponbare -- Xanthomonas oryzae pv. Oryzae MAI1 inoculated 16383645 0.9697 29864161 4/2/2018 SRX3510992 Nipponbare_MOCK_24hpi_rep1 PRJNA427491 leaf Oryza sativa Japonica Group Nipponbare -- mock 10523934 0.9695 29864161 4/2/2018 SRX3513464 osvil2 2 mm panicle rep 1 PRJNA427581 2 mm panicle Oryza sativa Japonica Group Dongjin osvil2 mutant -- 24599140 0.9454 29467779 12/28/2017 SRX3513459 WT 2 mm panicle rep 1 PRJNA427581 2 mm panicle Oryza sativa Japonica Group Dongjin wild type -- 24663187 0.9464 29467779 12/28/2017 SRX3513467 osvil2 4 mm panicle rep 1 PRJNA427581 4 mm panicle Oryza sativa Japonica Group Dongjin osvil2 mutant -- 24592324 0.9435 29467779 12/28/2017 SRX3513461 WT 4 mm panicle rep 1 PRJNA427581 4 mm panicle Oryza sativa Japonica Group Dongjin wild type -- 24700171 0.9517 29467779 12/28/2017 SRX3532815 Nip 1 PRJNA428566 whole plant Oryza sativa Japonica Group Nipponbare -- -- 27272519 0.7204 30448535 12/26/2018 SRX3599256 Leaf_CK_rep1 PRJNA431539 leaf Oryza sativa Japonica Group Nipponbare -- control 16506604 0.8844 31111914 6/20/2019 SRX3599257 Leaf_Salt_rep1 PRJNA431539 leaf Oryza sativa Japonica Group Nipponbare -- salt stress 17652428 0.8924 31111914 6/20/2019 SRX3599258 Root_CK_rep1 PRJNA431539 root Oryza sativa Japonica Group Nipponbare -- control 17087684 0.8124 31111914 6/20/2019 SRX3599259 Root_Salt__rep1 PRJNA431539 root Oryza sativa Japonica Group Nipponbare -- salt stress 16170027 0.8325 31111914 6/20/2019 SRX3664166 gs9-3 PRJNA433301 young panicle Oryza sativa Japonica Group Nipponbare gs9 mutant -- 41618152 0.8943 -- 2/8/2018 SRX3664168 NPB-3 PRJNA433301 young panicle Oryza sativa Japonica Group Nipponbare wild type -- 46375111 0.895 -- 2/8/2018 SRX3754681 starvation_RNAseq_rep1 PRJNA436566 seedling Oryza sativa Japonica Group Dongjin -- continuous darkness 48hrs 24457804 0.8432 30253806 9/10/2018 SRX3754679 control_RNAseq_rep1 PRJNA436566 seedling Oryza sativa Japonica Group Dongjin -- control 24119971 0.807 30253806 9/10/2018 SRX3754683 submergence_RNAseq_rep1 PRJNA436566 seedling Oryza sativa Japonica Group Dongjin -- submergence 6hrs 23120931 0.8316 30253806 9/10/2018 SRX3773932 WT_8h_2 PRJNA437217 seed Oryza sativa Japonica Group japonica wild type -- 23281143 0.8725 -- 3/8/2018 SRX3861943 SDG725Ri_RNAseq_rep1 PRJNA447922 shoot Oryza sativa Japonica Group -- SDG725Ri mutant -- 65952601 0.7997 -- 3/29/2018 SRX3861945 WT_RNAseq_rep1 PRJNA447922 shoot Oryza sativa Japonica Group -- wild type -- 30922819 0.7764 -- 3/29/2018 SRX4321407 CP_PROG1_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of PROG1 -- 30592784 0.8824 30297755 7/5/2018 SRX4321413 CP_ZnF5_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of ZnF5 -- 26052644 0.8884 30297755 7/5/2018 SRX4321416 CP_ZnF7_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of ZnF7 -- 21788874 0.8855 30297755 7/5/2018 SRX4321422 CP_ZnF8_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- transgenic plants of ZnF8 -- 24464260 0.8636 30297755 7/5/2018 SRX4321410 CP_PROG1_control_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- wild type -- 22356252 0.8818 30297755 7/5/2018 SRX4321419 CP_ZnF5_ZnF7_control_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- wild type -- 22591301 0.8803 30297755 7/5/2018 SRX4321425 CP_ZnF8_control_r1 PRJNA478448 Tiller bases Oryza sativa Japonica Group -- wild type -- 32342783 0.8676 30297755 7/5/2018 SRX4881237 Leaf_2 PRJNA482217 flag leaf Oryza sativa Japonica Group Nipponbare -- -- 114040349 0.926 31857423 11/10/2019 SRX4881243 Flower_1 PRJNA482217 flower Oryza sativa Japonica Group Nipponbare -- -- 135776272 0.8986 31857423 11/10/2019 SRX4881233 Root_1 PRJNA482217 root Oryza sativa Japonica Group Nipponbare -- -- 123792466 0.903 31857423 11/10/2019 SRX4807023 Seed_1 PRJNA482217 seed Oryza sativa Japonica Group Nipponbare -- -- 73441791 0.7802 31857423 11/3/2019 SRX4881242 Seedling_3 PRJNA482217 seedling Oryza sativa Japonica Group Nipponbare -- -- 93823846 0.8427 31857423 11/10/2019 SRX4881240 Stem_2 PRJNA482217 stem Oryza sativa Japonica Group Nipponbare -- -- 100751979 0.8925 31857423 11/10/2019 SRX4496310 Rice heat-stressed rep2 PRJNA483853 seedling Oryza sativa Japonica Group Nipponbare -- 44°C 3 days 22439711 0.9254 -- 10/19/2018 SRX4496312 Rice non-stressed rep2 PRJNA483853 seedling Oryza sativa Japonica Group Nipponbare -- control 20961112 0.8182 -- 10/19/2018 SRX4890362 WT (NIP) rep1 PRJNA496507 Leaf Oryza sativa Japonica Group Nipponbare wild type -- 26213322 0.8528 30448535 12/26/2018 SRX4935323 OsKO-1 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare KO control 21328445 0.7953 32504260 9/23/2019 SRX4935322 OsKOS-2 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare KO salt stress 36010224 0.8507 32504260 9/23/2019 SRX4935324 OsWT-1 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare wild type control 44083230 0.8456 32504260 9/23/2019 SRX4935320 OsWTS-3 PRJNA498361 seedling Oryza sativa Japonica Group Nipponbare wild type salt stress 19762090 0.8466 32504260 9/23/2019 SRX4963556 WT-2 PRJNA503271 endosperm Oryza sativa Japonica Group Nipponbare wild type -- 23954153 0.8428 30628157 11/30/2019 SRX5235070 Nip RNA seq replicate 1 PRJNA514100 leaf Oryza sativa Japonica Group Nipponbare -- -- 40019704 0.9592 30919978 7/30/2019 SRX5320604 osj_PBM_1 PRJNA518559 panicle Oryza sativa Japonica Group Nipponbare -- -- 41178614 0.7878 31346594 7/28/2019 SRX5406940 suf4Ri-1-1 PRJNA523500 seedling Oryza sativa Japonica Group Nipponbare suf4Ri -- 13975072 0.7377 31278262 2/22/2019 SRX5574791 salt-0.5 h-1 PRJNA528350 primary root Oryza sativa Japonica Group Nipponbare -- salt 0.5 h 26091541 0.9291 30924949 3/26/2019 SRX5574795 salt-3 h-1 PRJNA528350 primary root Oryza sativa Japonica Group Nipponbare -- salt 3 h 23337237 0.93 30924949 3/26/2019 SRX5636330 Nipponbare_Drought stress24h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Drought stress24h 25438543 0.9038 31544012 7/10/2019 SRX5636341 Nipponbare_Drought stress36h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Drought stress36h 28951944 0.9041 31544012 7/10/2019 SRX5636370 Nipponbare_Drought stress48h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Drought stress48h 32369355 0.9145 31544012 7/10/2019 SRX5636348 Nipponbare_Heat stress36h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Heat stress36h 23653652 0.9461 31544012 7/10/2019 SRX5636355 Nipponbare_Heat stress48h_3 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Heat stress48h 17894008 0.927 31544012 7/10/2019 SRX5636343 Nipponbare_Heat stress6h_1 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Heat stress6h 14991564 0.9279 31544012 7/10/2019 SRX5636385 Nipponbare_Salt stress 24h_2 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress 24h 33521814 0.9101 31544012 7/10/2019 SRX5636352 Nipponbare_Salt stress1h_3 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress1h 40912487 0.9208 31544012 7/10/2019 SRX5636360 Nipponbare_Salt stress36h_2 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress36h 30948124 0.9233 31544012 7/10/2019 SRX5636350 Nipponbare_Salt stress3h_2 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- Salt stress3h 30650689 0.9286 31544012 7/10/2019 SRX5636380 Nipponbare_Control-3 PRJNA530826 stem and leaf Oryza sativa Japonica Group Nipponbare -- control 24971943 0.9529 31544012 7/10/2019 SRX5727255 O2428-LO2d-3 PRJNA534011 whole germinating seeds Oryza sativa Japonica Group japonica -- room temperature anaerobic 2d 14157253 0.8974 31072298 4/23/2019 SRX5727253 O2428-LO3d-2 PRJNA534011 whole germinating seeds Oryza sativa Japonica Group japonica -- room temperature anaerobic 3d 12350958 0.889 31072298 4/23/2019 SRX5727251 O2428-LO4d-1 PRJNA534011 whole germinating seeds Oryza sativa Japonica Group japonica -- room temperature anaerobic 4d 14056799 0.8833 31072298 4/23/2019 SRX5733523 RNA_T1-15_rep2 PRJNA535389 Leaf Oryza sativa Japonica Group Nipponbare OsNRPD1 RNAi -- 49724958 0.9374 -- 4/25/2019 SRX5733525 RNA_WT_rep3 PRJNA535389 Leaf Oryza sativa Japonica Group Nipponbare wild type -- 51027561 0.932 -- 4/25/2019 SRX5824089 ES_OEZ_r1 PRJNA542632 early seedlings Oryza sativa Japonica Group Japonica Group OsLTPL159IL112 overexpression line cold treatment 24735706 0.9074 31469486 10/31/2019 SRX5824086 ES_ZH17_r1 PRJNA542632 early seedlings Oryza sativa Japonica Group Japonica Group wild type cold treatment 19223486 0.8995 31469486 10/31/2019 SRX5880876 WT_0h_3 PRJNA543951 seed Oryza sativa Japonica Group Nipponbare wild type* -- 37570682 0.888 -- 5/22/2019 SRX5891278 WT_0h_1 PRJNA544406 seed Oryza sativa Japonica Group Nipponbare wild type* -- 34965196 0.8837 -- 5/24/2019 SRX5891281 WT_8h_1 PRJNA544406 seed Oryza sativa Japonica Group Nipponbare wild type* -- 21979310 0.884 -- 5/24/2019 SRX6423933 D53m-OE-2 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare D53 over-expression under dark growth 37668922 0.9168 32665307 9/22/2019 SRX6423921 OsSMAX1m-OE-2 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare OsSMAX1 over-expression under dark growth 43687950 0.9142 32665307 9/22/2019 SRX6423940 d14/d14l-1 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the double mutant D14L and D14 under dark growth 41173035 0.9114 32665307 9/22/2019 SRX6423930 OsSMAX1-KO/d14-1 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the double mutant OsSMAX1 and D14 under dark growth 49987493 0.9085 32665307 9/22/2019 SRX6423925 OsSMAX1-KO/d3-1 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the double mutant OsSMAX1 and D3 under dark growth 44426849 0.9129 32665307 9/22/2019 SRX6423929 d14-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant D14 under dark growth 44235112 0.9168 32665307 9/22/2019 SRX6423939 d14l-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant D14L under dark growth 43999889 0.9172 32665307 9/22/2019 SRX6423926 d3-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant D3 under dark growth 56834028 0.9161 32665307 9/22/2019 SRX6423935 OsSMAX1-KO-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare the mutant OsSMAX1 under dark growth 49697817 0.9176 32665307 9/22/2019 SRX6423919 WT-3 PRJNA553596 aerial part Oryza sativa Japonica Group Nipponbare wild type under dark growth 48177532 0.9152 32665307 9/22/2019