#!/usr/bin/env python3 """Import a DRMHB ZIP or directory with full ground truth (no features).""" from __future__ import annotations import argparse from pathlib import Path from drmhb_workflow import create_base, positive_int from vibframe_anndata import validate_streamed_h5ad def parse_args() -> argparse.Namespace: parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("vibframe", type=Path) parser.add_argument("output", type=Path) parser.add_argument("--block-size-mib", type=positive_int, default=8) parser.add_argument("--dtype", choices=("float32", "float64"), default="float32") parser.add_argument( "--ground-truth-scope", choices=("all", "snapshot", "none"), default="all" ) parser.add_argument( "--without-ground-truth", action="store_true", help="Alias for scope=none" ) parser.add_argument("--max-sidecar-mib", type=positive_int, default=512) parser.add_argument("--overwrite", action="store_true") return parser.parse_args() def main() -> None: args = parse_args() scope = "none" if args.without_ground_truth else args.ground_truth_scope output = create_base( args.vibframe, args.output, scope=scope, dtype=args.dtype, block_size_mib=args.block_size_mib, max_sidecar_mib=args.max_sidecar_mib, overwrite=args.overwrite, ) print(f"Created: {output}") for key, value in validate_streamed_h5ad(output).items(): print(f"{key}: {value}") print( f"File size: {output.stat().st_size / 1024**3:.3f} GiB; ground truth scope: {scope}" ) print("Evaluation is outside X/obs. block-size-mib is not a total RAM limit.") if __name__ == "__main__": main()