diff --git "a/metadata/v2/samples_metadata_v2.csv" "b/metadata/v2/samples_metadata_v2.csv" --- "a/metadata/v2/samples_metadata_v2.csv" +++ "b/metadata/v2/samples_metadata_v2.csv" @@ -324,22 +324,22 @@ GSM3399442,GSE120374,GSE120374,Spatiotemporal dynamics of molecular pathology in GSM3399443,GSE120374,GSE120374,Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,,,normal,luna,,B6SJLSOD1-WT,juvenile,age rule: postnatal day,juvenile,p30,female,female,GSE120374:M0224,M0224,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,258,16449,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM3399443,,,train,sda-all,samples/GSE120374/GSM3399443,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation GSM3399444,GSE120374,GSE120374,Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,,,normal,luna,,B6SJLSOD1-WT,juvenile,age rule: postnatal day,juvenile,p30,female,female,GSE120374:M0224,M0224,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,216,16308,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM3399444,,,train,sda-all,samples/GSE120374/GSM3399444,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM3399445,GSE120374,GSE120374,Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,,,normal,luna,,B6SJLSOD1-WT,juvenile,age rule: postnatal day,juvenile,p30,female,female,GSE120374:M0224,M0224,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,295,16576,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM3399445,,,train,sda-all,samples/GSE120374/GSM3399445,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.99, ""life_stage"": 0.62}",, -GSM4067523,GSE130682,GSE130682,High-density spatial transcriptomics arrays for in situ tissue profiling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0009951,main olfactory bulb,Main olfactory bulb,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Other,release v3,HDST (high-density spatial transcriptomics),sequencing-based,High-density spatial transcriptomics arrays,,,,113429,14198,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,31501547,,GSM4067523,,,train,hesrt,samples/GSE130682/GSM4067523,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM4067523,GSE130682,GSE130682,High-density spatial transcriptomics arrays for in situ tissue profiling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0009951,main olfactory bulb,Main olfactory bulb,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Other,release v3,HDST,sequencing-based,High-density spatial transcriptomics arrays,,,,113429,14198,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,31501547,,GSM4067523,,,train,hesrt,samples/GSE130682/GSM4067523,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM4030472,GSE135805,GSE135805,Spatial Transcriptomics of Human Cardiac Tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Cardiac biopsy (transplantation),primary tissue,,,normal,luna,,Normal control,not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,902,4029,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,31862877,,GSM4030472,,,train,sda-all,samples/GSE135805/GSM4030472,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM4030473,GSE135805,GSE135805,Spatial Transcriptomics of Human Cardiac Tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Cardiac biopsy (explanted),primary tissue,MONDO:0004994,cardiomyopathy,disease,luna,ischemic cardiomyopathy,ischemic cardiomyopathy patient,not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,958,10488,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,31862877,,GSM4030473,,,train,sda-all,samples/GSE135805/GSM4030473,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 0.99}",, GSM4030474,GSE135805,GSE135805,Spatial Transcriptomics of Human Cardiac Tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Cardiac biopsy (explanted),primary tissue,MONDO:0005021,dilated cardiomyopathy,disease,luna,dilated cardiomyopathy,dilated cardiomyopathy patient,not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,934,4741,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,31862877,,GSM4030474,,,train,sda-all,samples/GSE135805/GSM4030474,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM4030475,GSE135805,GSE135805,Spatial Transcriptomics of Human Cardiac Tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Cardiac biopsy (explanted),primary tissue,MONDO:0005045,hypertrophic cardiomyopathy,disease,luna,hypertrophic cardiomyopathy,hypertrophic cardiomyopathy patient,not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,958,12734,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,31862877,,GSM4030475,,,train,sda-all,samples/GSE135805/GSM4030475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4096261,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,22969,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4096261,,,train,sda-all,samples/GSE137986/GSM4096261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.87, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4096262,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,936,22802,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4096262,,,train,sda-all,samples/GSE137986/GSM4096262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4189611,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,902,22243,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189611,,,train,sda-all,samples/GSE137986/GSM4189611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4189612,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 12,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1667,22571,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189612,,,train,sda-all,samples/GSE137986/GSM4189612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4189613,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,901,22846,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189613,,,train,sda-all,samples/GSE137986/GSM4189613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4189614,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1789,18787,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189614,,,train,sda-all,samples/GSE137986/GSM4189614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4189615,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,20268,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189615,,,train,sda-all,samples/GSE137986/GSM4189615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4364242,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1837,20849,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364242,,,train,sda-all,samples/GSE137986/GSM4364242,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4364243,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1662,21890,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364243,,,train,sda-all,samples/GSE137986/GSM4364243,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4364244,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1840,21337,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364244,,,train,sda-all,samples/GSE137986/GSM4364244,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4364245,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2109,20257,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364245,,,train,sda-all,samples/GSE137986/GSM4364245,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4096261,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,22969,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4096261,,,train,sda-all,samples/GSE137986/GSM4096261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.87, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4096262,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,936,22802,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4096262,,,train,sda-all,samples/GSE137986/GSM4096262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4189611,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,902,22243,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189611,,,train,sda-all,samples/GSE137986/GSM4189611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4189612,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 12,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1667,22571,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189612,,,train,sda-all,samples/GSE137986/GSM4189612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4189613,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,901,22846,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189613,,,train,sda-all,samples/GSE137986/GSM4189613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4189614,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1789,18787,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189614,,,train,sda-all,samples/GSE137986/GSM4189614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4189615,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 10,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,20268,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4189615,,,train,sda-all,samples/GSE137986/GSM4189615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4364242,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1837,20849,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364242,,,train,sda-all,samples/GSE137986/GSM4364242,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4364243,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1662,21890,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364243,,,train,sda-all,samples/GSE137986/GSM4364243,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4364244,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1840,21337,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364244,,,train,sda-all,samples/GSE137986/GSM4364244,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4364245,GSE137986,GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic Day 11,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2109,20257,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,33188776,,GSM4364245,,,train,sda-all,samples/GSE137986/GSM4364245,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM4284316,GSE144239+GSE144240,GSE144239,Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,cSCC,,not stated,luna,not stated,,unknown,,GSE144239:P2,P2,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,666,17138,counts,pixel,0.7614931074304077,platform_constant,True,H&E,0.7614931074304077,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,32579974;38037084;41872488,,GSM4284316,,,train,hesrt,samples/GSE144239/GSM4284316,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.63, ""life_stage"": 1.0}",, GSM4284317,GSE144239+GSE144240,GSE144239,Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,cSCC,,not stated,luna,not stated,,unknown,,GSE144239:P2,P2,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,646,17344,counts,pixel,0.7626040359088069,platform_constant,True,H&E,0.7626040359088069,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,32579974;38037084;41872488,,GSM4284317,,,train,hesrt,samples/GSE144239/GSM4284317,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM4284318,GSE144239+GSE144240,GSE144239,Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,cSCC,,not stated,luna,not stated,,unknown,,GSE144239:P2,P2,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,638,17883,counts,pixel,0.7617104538561993,platform_constant,True,H&E,0.7617104538561993,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,32579974;38037084;41872488,,GSM4284318,,,train,hesrt,samples/GSE144239/GSM4284318,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.59, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -437,7 +437,7 @@ GSM5026146,GSE148612,GSE148612,Neuroinflammatory astrocyte subtypes in the mouse GSM5026147,GSE148612,GSE148612,Neuroinflammatory astrocyte subtypes in the mouse brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,perturbation,luna,,24h_LPS_i.p.,juvenile,luna,juvenile,30–35 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2419,32285,counts,pixel,4.173404329338708,platform_constant,True,H&E,4.173404329338708,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34413515,,GSM5026147,,,test,hesrt,samples/GSE148612/GSM5026147,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM5026148,GSE148612,GSE148612,Neuroinflammatory astrocyte subtypes in the mouse brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,perturbation,luna,,24h_LPS_i.p.,juvenile,luna,juvenile,30–35 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2157,32285,counts,pixel,4.173404329338708,platform_constant,True,H&E,4.173404329338708,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34413515,,GSM5026148,,,test,hesrt,samples/GSE148612/GSM5026148,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5026149,GSE148612,GSE148612,Neuroinflammatory astrocyte subtypes in the mouse brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,perturbation,luna,,24h_LPS_i.p.,juvenile,luna,juvenile,30–35 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2730,32285,counts,pixel,4.173404329338708,platform_constant,True,H&E,4.173404329338708,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34413515,,GSM5026149,,,test,hesrt,samples/GSE148612/GSM5026149,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM4644079,GSE153424,GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,,primary tissue,,,normal,luna,,barcoded,neonatal or infant,age rule: postnatal day,neonatal or infant,P14,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3805,27999,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.870885169924106,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35210624,,GSM4644079,,,train,sda-all,samples/GSE153424/GSM4644079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4644079,GSE153424,GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,,primary tissue,,,normal,luna,,barcoded,neonatal or infant,age rule: postnatal day,neonatal or infant,P14,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3805,27999,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.8708851699241063,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35210624,,GSM4644079,,,train,sda-all,samples/GSE153424/GSM4644079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM4644080,GSE153424,GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,,primary tissue,,,normal,luna,,barcoded,neonatal or infant,age rule: postnatal day,neonatal or infant,P14,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4128,27999,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9273645819217258,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35210624,,GSM4644080,,,train,sda-all,samples/GSE153424/GSM4644080,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM4644081,GSE153424,GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,,primary tissue,,,normal,luna,,barcoded,neonatal or infant,age rule: postnatal day,neonatal or infant,P14,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4169,27999,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9277393421166704,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35210624,,GSM4644081,,,train,sda-all,samples/GSE153424/GSM4644081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM4644082,GSE153424,GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,,primary tissue,,,normal,luna,,barcoded,neonatal or infant,age rule: postnatal day,neonatal or infant,P14,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3922,27999,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.912362885307886,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35210624,,GSM4644082,,,train,sda-all,samples/GSE153424/GSM4644082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -482,16 +482,16 @@ GSM4861202,GSE160137,GSE160137,"Single cell- Cluster-RNA seq and Spatial Transcr GSM4861203,GSE160137,GSE160137,"Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0002100,trunk,trunk of Pax2GFP mouse embryo,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,E9.5 (21 somite stage),unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,222,53574,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.223255518423734,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,33976190,,GSM4861203,,,train,sda-all,samples/GSE160137/GSM4861203,sda-tissue-disease-2.3,"{""organ"": 0.5700000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.84, ""life_stage"": 1.0}",organ;disease_status,low_confidence_annotation GSM4861204,GSE160137,GSE160137,"Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0002100,trunk,trunk of Pax2GFP mouse embryo,primary tissue,,,perturbation,luna,,,embryonic,age rule: embryonic day,embryonic,E9.5 (21 somite stage),unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,192,53574,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.197644959050538,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,33976190,,GSM4861204,,,train,sda-all,samples/GSE160137/GSM4861204,sda-tissue-disease-2.3,"{""organ"": 0.63, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.91, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM4861205,GSE160137,GSE160137,"Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0002100,trunk,trunk of Pax2GFP mouse embryo,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,E9.5 (21 somite stage),unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,178,53574,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.203652737212028,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,33976190,,GSM4861205,,,train,sda-all,samples/GSE160137/GSM4861205,sda-tissue-disease-2.3,"{""organ"": 0.74, ""sample_kind"": 0.99, ""disease_status"": 0.39, ""uberon"": 0.87, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM4904759,GSE161318,GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,tibialis anterior muscle,primary tissue,,,perturbation,luna,,Notexin injury (Day 2),adult,age rule: age with unit,adult,5 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,982,33217,counts,pixel,0.360554937008655,platform_constant,True,H&E,0.5000127414192713,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34773081,,GSM4904759,,,train,hesrt,samples/GSE161318/GSM4904759,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM4904759,GSE161318,GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,tibialis anterior muscle,primary tissue,,,perturbation,luna,,Notexin injury (Day 2),adult,age rule: age with unit,adult,5 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,982,33217,counts,pixel,0.36055493700865504,platform_constant,True,H&E,0.5000127414192713,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34773081,,GSM4904759,,,train,hesrt,samples/GSE161318/GSM4904759,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM4904760,GSE161318,GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,tibialis anterior muscle,primary tissue,,,perturbation,luna,,Notexin injury (Day 5),adult,age rule: age with unit,adult,5 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1011,33217,counts,pixel,0.359757798335236,platform_constant,True,H&E,0.5000000741866777,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34773081,,GSM4904760,,,train,hesrt,samples/GSE161318/GSM4904760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM4904761,GSE161318,GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,tibialis anterior muscle,primary tissue,,,perturbation,luna,,Notexin injury (Day 7),adult,age rule: age with unit,adult,5 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,995,33217,counts,pixel,0.3601049990480867,platform_constant,True,H&E,0.5000132436451113,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34773081,,GSM4904761,,,train,hesrt,samples/GSE161318/GSM4904761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9301054,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,26564,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999720226175049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301054,,,test,sda-all,samples/GSE161369/GSM9301054,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM4904761,GSE161318,GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,tibialis anterior muscle,primary tissue,,,perturbation,luna,,Notexin injury (Day 7),adult,age rule: age with unit,adult,5 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,995,33217,counts,pixel,0.36010499904808674,platform_constant,True,H&E,0.5000132436451113,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34773081,,GSM4904761,,,train,hesrt,samples/GSE161318/GSM4904761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9301054,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,26564,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997202261750495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301054,,,test,sda-all,samples/GSE161369/GSM9301054,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9301055,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,74003,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000171971017151,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301055,,,test,sda-all,samples/GSE161369/GSM9301055,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9301056,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,60870,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000111344404148,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301056,,,test,sda-all,samples/GSE161369/GSM9301056,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9301057,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,37661,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000126169939438,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301057,,,test,sda-all,samples/GSE161369/GSM9301057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9301058,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,67726,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301058,,,test,sda-all,samples/GSE161369/GSM9301058,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9301059,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,91962,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999889514970721,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301059,,,test,sda-all,samples/GSE161369/GSM9301059,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9301060,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,17474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999741788886593,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301060,,,test,sda-all,samples/GSE161369/GSM9301060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9301060,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_89g,xenium-1.7.1.0,cell,17474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997417888865936,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301060,,,test,sda-all,samples/GSE161369/GSM9301060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9301061,GSE161369,GSE161369,Pancreatic Cancer Datasets,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,human pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,66433,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999934200631673,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42649389,,GSM9301061,,,test,sda-all,samples/GSE161369/GSM9301061,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM4983123,GSE163631,GSE163631,Nrf1 promotes heart regeneration and repair by regulating proteostasis and redox balance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart transverse section,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,Myocardial infarction,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,OCT embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,693,15300,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,34489413,,GSM4983123,,,train,sda-all,samples/GSE163631/GSM4983123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5268644,GSE163631,GSE163631,Nrf1 promotes heart regeneration and repair by regulating proteostasis and redox balance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart transverse section,primary tissue,,,perturbation,luna,,Sham control,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,OCT embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,544,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,34489413,,GSM5268644,,,train,sda-all,samples/GSE163631/GSM5268644,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -582,8 +582,8 @@ GSM6443463,GSE174265,GSE174265,Neurons burdened by DNA double strand breaks inci GSM6443464,GSE174265,GSE174265,Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,perturbation,luna,,CK,neonatal or infant,luna,neonatal or infant,,unknown,,GSE174265:8254,8254,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2559,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36170369,,GSM6443464,,,train,sda-all,samples/GSE174265/GSM6443464,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.09, ""uberon"": 0.75, ""life_stage"": 0.86}",disease_status,low_confidence_annotation GSM5291683,GSE174313,GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0002492,sagittal suture,Sagittal suture,primary tissue,,,perturbation,luna,,TrkAF592A mutant and control,neonatal or infant,age rule: postnatal day,neonatal or infant,0 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,423,31053,counts,pixel,4.081395419037193,platform_constant,True,H&E,4.081395419037193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34663698,,GSM5291683,,,train,hesrt,samples/GSE174313/GSM5291683,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5291684,GSE174313,GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0002492,sagittal suture,Sagittal suture,primary tissue,,,perturbation,luna,,TrkAF592A mutant and control,neonatal or infant,age rule: postnatal day,neonatal or infant,0 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,363,31053,counts,pixel,3.988372223044195,platform_constant,True,H&E,3.988372223044195,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34663698,,GSM5291684,,,train,hesrt,samples/GSE174313/GSM5291684,sda-tissue-disease-2.3,"{""organ"": 0.81, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5291685,GSE174313,GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0002492,sagittal suture,Sagittal suture,primary tissue,,,perturbation,luna,,TrkAF592A mutant and control,neonatal or infant,age rule: postnatal day,neonatal or infant,0 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,560,31053,counts,pixel,4.049418687765479,platform_constant,True,H&E,4.049418687765479,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34663698,,GSM5291685,,,train,hesrt,samples/GSE174313/GSM5291685,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5291686,GSE174313,GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0002492,sagittal suture,Sagittal suture,primary tissue,,,perturbation,luna,,TrkAF592A mutant and control,neonatal or infant,age rule: postnatal day,neonatal or infant,0 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,324,31053,counts,pixel,3.981976643521679,platform_constant,True,H&E,3.981976643521679,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34663698,,GSM5291686,,,train,hesrt,samples/GSE174313/GSM5291686,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5291685,GSE174313,GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0002492,sagittal suture,Sagittal suture,primary tissue,,,perturbation,luna,,TrkAF592A mutant and control,neonatal or infant,age rule: postnatal day,neonatal or infant,0 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,560,31053,counts,pixel,4.0494186877654785,platform_constant,True,H&E,4.0494186877654785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34663698,,GSM5291685,,,train,hesrt,samples/GSE174313/GSM5291685,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5291686,GSE174313,GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0002492,sagittal suture,Sagittal suture,primary tissue,,,perturbation,luna,,TrkAF592A mutant and control,neonatal or infant,age rule: postnatal day,neonatal or infant,0 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,324,31053,counts,pixel,3.9819766435216786,platform_constant,True,H&E,3.9819766435216786,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34663698,,GSM5291686,,,train,hesrt,samples/GSE174313/GSM5291686,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5291792,GSE174321,GSE174321,Spatiotemporal heterogeneity of inflammatory changes in Alzheimer's disease analyzed spatially resolved transcriptome,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,wild type,adult,age rule: age with unit,adult,3 months,male,male,GSE174321:Littermate,Littermate,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2420,32285,counts,pixel,15.358585748004048,platform_constant,True,H&E,15.358585748004048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38036733,,GSM5291792,,,train,hesrt,samples/GSE174321/GSM5291792,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5291793,GSE174321,GSE174321,Spatiotemporal heterogeneity of inflammatory changes in Alzheimer's disease analyzed spatially resolved transcriptome,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,transgenic,adult,age rule: age with unit,adult,3 months,male,male,GSE174321:5XFAD (Tg6799),5XFAD (Tg6799),,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2987,32285,counts,pixel,15.358585748004048,platform_constant,True,H&E,15.358585748004048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38036733,,GSM5291793,,,train,hesrt,samples/GSE174321/GSM5291793,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM5291794,GSE174321,GSE174321,Spatiotemporal heterogeneity of inflammatory changes in Alzheimer's disease analyzed spatially resolved transcriptome,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,wild type,adult,age rule: age with unit,adult,7 months,male,male,GSE174321:Littermate,Littermate,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3482,32285,counts,pixel,17.065656336123478,platform_constant,True,H&E,17.065656336123478,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38036733,,GSM5291794,,,train,hesrt,samples/GSE174321/GSM5291794,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -769,18 +769,18 @@ GSM5321565,GSE174647,GSE174647,Identification of early neurodegenerative pathway GSM5321566,GSE174647,GSE174647,Identification of early neurodegenerative pathways in progressive multiple sclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000956,cerebral cortex,brain cortex,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,,HI,not stated,luna,not stated,,unknown,,GSE174647:OX_PDC22,OX_PDC22,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,608,19456,counts,pixel,5.714285714285714,platform_constant,True,H&E,5.714285714285714,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35726057,,GSM5321566,,,test,hesrt,samples/GSE174647/GSM5321566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM5321567,GSE174647,GSE174647,Identification of early neurodegenerative pathways in progressive multiple sclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000956,cerebral cortex,brain cortex,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,,HI,not stated,luna,not stated,,unknown,,GSE174647:OX_PDC22,OX_PDC22,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,787,19456,counts,pixel,5.819759619793254,platform_constant,True,H&E,5.819759619793254,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35726057,,GSM5321567,,,test,hesrt,samples/GSE174647/GSM5321567,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM5321568,GSE174647,GSE174647,Identification of early neurodegenerative pathways in progressive multiple sclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000956,cerebral cortex,brain cortex,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,,HI,not stated,luna,not stated,,unknown,,GSE174647:OX_PDC22,OX_PDC22,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,712,19456,counts,pixel,5.879810320378547,platform_constant,True,H&E,5.879810320378547,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35726057,,GSM5321568,,,test,hesrt,samples/GSE174647/GSM5321568,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.91, ""life_stage"": 1.0}",, -GSM5924030,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4510,17943,counts,pixel,3.866438432816536,platform_constant,True,H&E,3.866438432816536,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924030,,,train,hesrt,samples/GSE175540/GSM5924030,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM5924030,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4510,17943,counts,pixel,3.8664384328165355,platform_constant,True,H&E,3.8664384328165355,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924030,,,train,hesrt,samples/GSE175540/GSM5924030,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924031,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4755,17943,counts,pixel,3.885779883096601,platform_constant,True,H&E,3.885779883096601,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-9baa1d1e0f25,cross_gse_redeposit,GSM8440295,train,hesrt,samples/GSE175540/GSM5924031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924032,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3829,17943,counts,pixel,3.8603879293001206,platform_constant,True,H&E,3.8603879293001206,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-46629a0da079,cross_gse_redeposit,GSM8440296,train,hesrt,samples/GSE175540/GSM5924032,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM5924033,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4975,17943,counts,pixel,3.948097573197799,platform_constant,True,H&E,3.948097573197799,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-67f978fc00ab,cross_gse_redeposit,GSM8440298,train,hesrt,samples/GSE175540/GSM5924033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM5924033,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4975,17943,counts,pixel,3.9480975731977987,platform_constant,True,H&E,3.9480975731977987,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-67f978fc00ab,cross_gse_redeposit,GSM8440298,train,hesrt,samples/GSE175540/GSM5924033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM5924034,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4860,17943,counts,pixel,3.8885319996379897,platform_constant,True,H&E,3.8885319996379897,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924034,,,train,hesrt,samples/GSE175540/GSM5924034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924035,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4948,17943,counts,pixel,3.910185259322293,platform_constant,True,H&E,3.910185259322293,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-0889fbc16d13,cross_gse_redeposit,GSM8440299,train,hesrt,samples/GSE175540/GSM5924035,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5924036,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4915,17943,counts,pixel,3.967592655578104,platform_constant,True,H&E,3.967592655578104,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924036,,,train,hesrt,samples/GSE175540/GSM5924036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5924037,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3585,17943,counts,pixel,3.913888932724424,platform_constant,True,H&E,3.913888932724424,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-7ccd33d56775,cross_gse_redeposit,GSM8440307,train,hesrt,samples/GSE175540/GSM5924037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM5924037,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3585,17943,counts,pixel,3.9138889327244235,platform_constant,True,H&E,3.9138889327244235,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-7ccd33d56775,cross_gse_redeposit,GSM8440307,train,hesrt,samples/GSE175540/GSM5924037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924038,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3206,17943,counts,pixel,3.868807246714235,platform_constant,True,H&E,3.868807246714235,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-25aa9d1085b5,cross_gse_redeposit,GSM8440301,train,hesrt,samples/GSE175540/GSM5924038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5924039,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4940,17943,counts,pixel,3.971296321633138,platform_constant,True,H&E,3.971296321633138,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924039,,,train,hesrt,samples/GSE175540/GSM5924039,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924040,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4562,17943,counts,pixel,3.903703717757041,platform_constant,True,H&E,3.903703717757041,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924040,,,train,hesrt,samples/GSE175540/GSM5924040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM5924041,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4359,17943,counts,pixel,3.924999908547498,platform_constant,True,H&E,3.924999908547498,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-b432ff0847be,cross_gse_redeposit,GSM8440311,train,hesrt,samples/GSE175540/GSM5924041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM5924041,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4359,17943,counts,pixel,3.9249999085474974,platform_constant,True,H&E,3.9249999085474974,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-b432ff0847be,cross_gse_redeposit,GSM8440311,train,hesrt,samples/GSE175540/GSM5924041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5924042,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1451,36601,counts,pixel,4.403623507225773,platform_constant,True,H&E,4.403623507225773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924042,,,train,hesrt,samples/GSE175540/GSM5924042,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5924043,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1439,36601,counts,pixel,4.521100871135091,platform_constant,True,H&E,4.521100871135091,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924043,,,train,hesrt,samples/GSE175540/GSM5924043,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM5924044,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1983,36601,counts,pixel,4.844036681746746,platform_constant,True,H&E,4.844036681746746,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924044,,,train,hesrt,samples/GSE175540/GSM5924044,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -790,7 +790,7 @@ GSM5924047,GSE175540,GSE175540,Tertiary lymphoid structures generate and propaga GSM5924048,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1678,36601,counts,pixel,5.260274309260301,platform_constant,True,H&E,5.260274309260301,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924048,,,train,hesrt,samples/GSE175540/GSM5924048,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924049,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1186,36601,counts,pixel,4.844036681746773,platform_constant,True,H&E,4.844036681746773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,GSM5924049,,,train,hesrt,samples/GSE175540/GSM5924049,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5924050,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1349,36601,counts,pixel,4.462385218287565,platform_constant,True,H&E,4.462385218287565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-d0a7c6f62c01,cross_gse_redeposit,GSM8440294,train,hesrt,samples/GSE175540/GSM5924050,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5924051,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2007,36601,counts,pixel,4.8440366817468,platform_constant,True,H&E,4.8440366817468,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-8dba471f046c,cross_gse_redeposit,GSM8440297,train,hesrt,samples/GSE175540/GSM5924051,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM5924051,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2007,36601,counts,pixel,4.8440366817467995,platform_constant,True,H&E,4.8440366817467995,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-8dba471f046c,cross_gse_redeposit,GSM8440297,train,hesrt,samples/GSE175540/GSM5924051,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5924052,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2580,36601,counts,pixel,4.383561756054834,platform_constant,True,H&E,4.383561756054834,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-1ff53edc6224,cross_gse_redeposit,GSM8440300,train,hesrt,samples/GSE175540/GSM5924052,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5924053,GSE175540,GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,ccRCC tumor,tumour tissue,MONDO:0005549,renal cell adenocarcinoma,disease,luna,renal cell cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1084,36601,counts,pixel,4.558904128262326,platform_constant,True,H&E,4.558904128262326,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35231421,,CG-c2563cc48122,cross_gse_redeposit,GSM8440302,train,hesrt,samples/GSE175540/GSM5924053,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5355663,GSE176092,GSE176092,Spatiotemporal transcriptome analysis reveals critical roles for mechano-sensing genes at the border zone in remodeling after myocardial infarction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1689,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM5355663,,,test,sda-all,samples/GSE176092/GSM5355663,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -825,7 +825,7 @@ GSM5420750,GSE179572,GSE179572,Spatial transcriptomics of human brain metastases GSM5420751,GSE179572,GSE179572,Spatial transcriptomics of human brain metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,metastasis,MONDO:0021211;MONDO:0005061,brain neoplasm;lung adenocarcinoma,disease,luna,lung adenocarcinoma,brain metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,946,36601,counts,pixel,4.6374192487345685,platform_constant,True,H&E,4.6374192487345685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35584630;35707680,,GSM5420751,,,train,hesrt,samples/GSE179572/GSM5420751,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5420752,GSE179572,GSE179572,Spatial transcriptomics of human brain metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,metastasis,MONDO:0007763;MONDO:0021211,nonpapillary renal cell carcinoma;brain neoplasm,disease,luna,renal cell carcinoma (clear cell),brain metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1298,36601,counts,pixel,4.622903305320407,platform_constant,True,H&E,4.622903305320407,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35584630;35707680,,GSM5420752,,,train,hesrt,samples/GSE179572/GSM5420752,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM5420753,GSE179572,GSE179572,Spatial transcriptomics of human brain metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,metastasis,MONDO:0021211;MONDO:0004989,brain neoplasm;breast carcinoma,disease,luna,breast carcinoma,brain metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4342,36601,counts,pixel,4.633225988977563,platform_constant,True,H&E,4.633225988977563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35584630;35707680,,GSM5420753,,,train,hesrt,samples/GSE179572/GSM5420753,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5420754,GSE179572,GSE179572,Spatial transcriptomics of human brain metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,metastasis,MONDO:0021211;MONDO:0005061,brain neoplasm;lung adenocarcinoma,disease,luna,lung adenocarcinoma,brain metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2152,36601,counts,pixel,4.635484031355492,platform_constant,True,H&E,4.635484031355492,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35584630;35707680,,GSM5420754,,,train,hesrt,samples/GSE179572/GSM5420754,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5420754,GSE179572,GSE179572,Spatial transcriptomics of human brain metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,metastasis,MONDO:0021211;MONDO:0005061,brain neoplasm;lung adenocarcinoma,disease,luna,lung adenocarcinoma,brain metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2152,36601,counts,pixel,4.6354840313554915,platform_constant,True,H&E,4.6354840313554915,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35584630;35707680,,GSM5420754,,,train,hesrt,samples/GSE179572/GSM5420754,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5467944,GSE180682,GSE180682,Spatial transcriptomics reveals increased energetic requirements underpinning age-dependent declines in digit regeneration rescued through administration of OAA,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0002544,digit,Digit,primary tissue,,,perturbation,luna,,D10 Blastema [A1],aged,luna,aged,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1007,31053,counts,pixel,4.371802511732713,platform_constant,True,H&E,4.371802511732713,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35616636,,GSM5467944,,,train,hesrt,samples/GSE180682/GSM5467944,sda-tissue-disease-2.3,"{""organ"": 0.71, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.5, ""life_stage"": 0.9500000000000001}",uberon,low_confidence_annotation GSM5467945,GSE180682,GSE180682,Spatial transcriptomics reveals increased energetic requirements underpinning age-dependent declines in digit regeneration rescued through administration of OAA,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0002544,digit,Digit,primary tissue,,,perturbation,luna,,D10 Blastema [B1],not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1234,31053,counts,pixel,4.368022997270666,platform_constant,True,H&E,4.368022997270666,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35616636,,GSM5467945,,,train,hesrt,samples/GSE180682/GSM5467945,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.49, ""life_stage"": 0.65}",organ;uberon,low_confidence_annotation GSM5467946,GSE180682,GSE180682,Spatial transcriptomics reveals increased energetic requirements underpinning age-dependent declines in digit regeneration rescued through administration of OAA,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0002544,digit,Digit,primary tissue,,,perturbation,luna,,D10 Blastema [C1],aged,luna,aged,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,993,31053,counts,pixel,4.3642444428604525,platform_constant,True,H&E,4.3642444428604525,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35616636,,GSM5467946,,,train,hesrt,samples/GSE180682/GSM5467946,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.51, ""life_stage"": 0.81}",organ;uberon,low_confidence_annotation @@ -853,7 +853,7 @@ GSM5531131,GSE182208,GSE182208,Endothelial Phospholipase C gamma2 Improves Outco GSM5538852,GSE182867,GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,2166,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.917242125584516,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,34759321,,GSM5538852,,,val,sda-all,samples/GSE182867/GSM5538852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.88, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM5538853,GSE182867,GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,1130,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.917206922091654,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,34759321,,GSM5538853,,,val,sda-all,samples/GSE182867/GSM5538853,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.93, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM5538854,GSE182867,GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,1269,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.966316306562737,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,34759321,,GSM5538854,,,val,sda-all,samples/GSE182867/GSM5538854,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.96, ""uberon"": 0.84, ""life_stage"": 1.0}",, -GSM5538855,GSE182867,GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,1850,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.917337653820753,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,34759321,,GSM5538855,,,val,sda-all,samples/GSE182867/GSM5538855,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.97, ""disease_status"": 0.97, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",, +GSM5538855,GSE182867,GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,1850,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9173376538207525,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,34759321,,GSM5538855,,,val,sda-all,samples/GSE182867/GSM5538855,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.97, ""disease_status"": 0.97, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",, GSM5543479,GSE182939,GSE182939,Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,perturbation,luna,,Sham control,adult,age rule: age with unit,not stated,8–10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1617,32285,counts,pixel,0.7315658917695215,platform_constant,True,H&E,0.7315658917695215,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34853151,,GSM5543479,,,train,hesrt,samples/GSE182939/GSM5543479,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5543480,GSE182939,GSE182939,Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0002492,acute kidney injury,disease,luna,acute kidney injury,Bi-IRI surgery,adult,age rule: age with unit,not stated,8–10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2219,32285,counts,pixel,0.7352742413412813,platform_constant,True,H&E,0.7352742413412813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34853151,,GSM5543480,,,train,hesrt,samples/GSE182939/GSM5543480,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5543481,GSE182939,GSE182939,Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0002492,acute kidney injury,disease,mondo_predicate (Luna: perturbation),acute kidney injury,Bi-IRI surgery,adult,age rule: age with unit,not stated,8–10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1893,32285,counts,pixel,0.7299270072992701,platform_constant,True,H&E,0.7299270072992701,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34853151,,GSM5543481,,,train,hesrt,samples/GSE182939/GSM5543481,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -967,18 +967,18 @@ GSM6025947,GSE185386,GSE185386,Melanoma Brain Metastasis Atlas,Homo sapiens,9606 GSM6025948,GSE185386,GSE185386,Melanoma Brain Metastasis Atlas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Melanoma subcutaneous metastasis,metastasis,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE185386:MPM06,MPM06,,,Slide-seq,release v3,Slide-seqV2,sequencing-based,SlideSeqV2,,,bead,25461,25850,counts,pixel,,unresolved,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,35803246,,GSM6025948,,,train,sda-all,samples/GSE185386/GSM6025948,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6025950,GSE185386,GSE185386,Melanoma Brain Metastasis Atlas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Melanoma subcutaneous metastasis,metastasis,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE185386:MPM10,MPM10,,,Slide-seq,release v3,Slide-seqV2,sequencing-based,SlideSeqV2,,,bead,37363,28763,counts,pixel,,unresolved,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,35803246,,GSM6025950,,,train,sda-all,samples/GSE185386/GSM6025950,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM5616008,GSE185477,GSE185477,"Single-Cell, Single-Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0001117,caudate lobe of liver,Liver Caudate Lobe,primary tissue,,,normal,luna,,,adult,luna,adult,30-60,male,M,,,,,Visium,release v3,Visium,sequencing-based,VISIUM,,,spot,2265,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.940820702246848,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,34792289,,CG-2da6052440ad,cross_gse_redeposit,GSM7697871,train,sda-all,samples/GSE185477/GSM5616008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5621965,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,413,33538,counts,pixel,0.1739119914618346,platform_constant,True,H&E,0.5000046852289655,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621965,,,train,hesrt,samples/GSE185715/GSM5621965,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.71, ""life_stage"": 0.98}",, +GSM5621965,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,413,33538,counts,pixel,0.17391199146183467,platform_constant,True,H&E,0.5000046852289655,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621965,,,train,hesrt,samples/GSE185715/GSM5621965,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.71, ""life_stage"": 0.98}",, GSM5621966,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,475,33538,counts,pixel,0.1736100645643971,platform_constant,True,H&E,0.4999936965132497,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621966,,,train,hesrt,samples/GSE185715/GSM5621966,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.45, ""life_stage"": 0.99}",disease_status;uberon,low_confidence_annotation -GSM5621967,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,469,33538,counts,pixel,0.1721167846453571,platform_constant,True,H&E,0.4999856907041432,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621967,,,train,hesrt,samples/GSE185715/GSM5621967,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.71, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM5621967,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,469,33538,counts,pixel,0.17211678464535718,platform_constant,True,H&E,0.4999856907041432,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621967,,,train,hesrt,samples/GSE185715/GSM5621967,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.71, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM5621968,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,416,33538,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.5000015226020829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621968,,,train,hesrt,samples/GSE185715/GSM5621968,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM5621969,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,444,33538,counts,pixel,0.1727115716753022,platform_constant,True,H&E,0.4999899195580733,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621969,,,train,hesrt,samples/GSE185715/GSM5621969,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, +GSM5621969,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,444,33538,counts,pixel,0.17271157167530224,platform_constant,True,H&E,0.49998991955807337,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621969,,,train,hesrt,samples/GSE185715/GSM5621969,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, GSM5621970,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,439,33538,counts,pixel,0.1724137931034483,platform_constant,True,H&E,0.50000945078347,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621970,,,train,hesrt,samples/GSE185715/GSM5621970,sda-tissue-disease-2.3,"{""organ"": 0.64, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.92, ""life_stage"": 0.98}",disease_status,low_confidence_annotation GSM5621971,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung organoid,organoid,,,normal,luna,,PFA fixed,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,533,33538,counts,pixel,0.1724135368409502,platform_constant,True,H&E,0.5000087076081786,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621971,,,train,hesrt,samples/GSE185715/GSM5621971,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5621972,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2536,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.5000015226020829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621972,,,train,hesrt,samples/GSE185715/GSM5621972,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM5621973,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2399,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.4999864312892824,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621973,,,train,hesrt,samples/GSE185715/GSM5621973,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM5621974,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2554,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.4999864312892824,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621974,,,train,hesrt,samples/GSE185715/GSM5621974,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.92, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM5621975,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2502,31053,counts,pixel,0.1739130434782608,platform_constant,True,H&E,0.5000077098228283,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621975,,,train,hesrt,samples/GSE185715/GSM5621975,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.84, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM5621976,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2216,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.4999864312892824,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621976,,,train,hesrt,samples/GSE185715/GSM5621976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.84, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM5621973,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2399,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.49998643128928244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621973,,,train,hesrt,samples/GSE185715/GSM5621973,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM5621974,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2554,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.49998643128928244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621974,,,train,hesrt,samples/GSE185715/GSM5621974,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.92, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM5621975,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2502,31053,counts,pixel,0.17391304347826086,platform_constant,True,H&E,0.5000077098228283,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621975,,,train,hesrt,samples/GSE185715/GSM5621975,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.84, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM5621976,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2216,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.49998643128928244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621976,,,train,hesrt,samples/GSE185715/GSM5621976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.84, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM5621977,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3105,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.5000015226020829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621977,,,train,hesrt,samples/GSE185715/GSM5621977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5621978,GSE185715,GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,,FFPE,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3047,31053,counts,pixel,0.1721170395869191,platform_constant,True,H&E,0.5000015226020829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36776149,,GSM5621978,,,train,hesrt,samples/GSE185715/GSM5621978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.88, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5631821,GSE186097,GSE186097,Polony gels enable amplifiable DNA stamping and spatial transcriptomics of chronic pain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,Mouse brain Olfactory bulb,primary tissue,,,normal,luna,,Wild-type,not stated,luna,not stated,,unknown,,,,,,Other,release v3,Pixel-seq,sequencing-based,other,,,cell,20234,32711,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36368323,,GSM5631821,,,train,sda-all,samples/GSE186097/GSM5631821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -986,7 +986,7 @@ GSM5631822,GSE186097,GSE186097,Polony gels enable amplifiable DNA stamping and s GSM5643203,GSE186290,GSE186290,Spatial transcriptome analysis of gastric cancer which GAN-KP transplanted C57BL/6J mouse,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,stomach,luna,UBERON:0000945,stomach,GAN-KP tumor,xenograft,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2429,31054,counts,pixel,4.875407793576616,platform_constant,True,H&E,4.875407793576616,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,34931404,,GSM5643203,,,train,hesrt,samples/GSE186290/GSM5643203,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM5661565,GSE186818,GSE186818,Spatial transcriptome analysis of brain region in grass puffer (Takifugu alboplumbeus),Takifugu alboplumbeus,433688,komon-damashi,Takifugu alboplumbeus,433688,,False,False,GEO organism field,Takifugu alboplumbeus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3095,26886,counts,pixel,4.283860198380393,platform_constant,True,H&E,4.283860198380393,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36306789,,GSM5661565,,,train,hesrt,samples/GSE186818/GSM5661565,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5673398,GSE188257,GSE188257,Spatial transcriptomics of the ageing ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,young and aged,adult,luna,adult,3-4 months and 15-16 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,841,32285,counts,pixel,13.507416082123992,platform_constant,True,H&E,13.507416082123992,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35996587,,GSM5673398,,,train,hesrt,samples/GSE188257/GSM5673398,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.87}",, -GSM5673399,GSE188257,GSE188257,Spatial transcriptomics of the ageing ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,young and aged,adult,luna,adult,3-4 months and 15-16 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1415,32285,counts,pixel,14.029939859788389,platform_constant,True,H&E,14.029939859788389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35996587,,GSM5673399,,,train,hesrt,samples/GSE188257/GSM5673399,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.89}",, +GSM5673399,GSE188257,GSE188257,Spatial transcriptomics of the ageing ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,young and aged,adult,luna,adult,3-4 months and 15-16 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1415,32285,counts,pixel,14.029939859788387,platform_constant,True,H&E,14.029939859788387,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35996587,,GSM5673399,,,train,hesrt,samples/GSE188257/GSM5673399,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.89}",, GSM5673400,GSE188257,GSE188257,Spatial transcriptomics of the ageing ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,young and aged,adult,luna,adult,3-4 months and 15-16 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,814,32285,counts,pixel,13.815453883061046,platform_constant,True,H&E,13.815453883061046,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35996587,,GSM5673400,,,train,hesrt,samples/GSE188257/GSM5673400,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.93}",, GSM5673401,GSE188257,GSE188257,Spatial transcriptomics of the ageing ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,young and aged,adult,luna,adult,3-4 months and 15-16 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1193,32285,counts,pixel,13.49587379751724,platform_constant,True,H&E,13.49587379751724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35996587,,GSM5673401,,,train,hesrt,samples/GSE188257/GSM5673401,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.93}",, GSM5691526,GSE188888,GSE188888,"Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,P2 apical resection + 3 days,neonatal or infant,age rule: postnatal day,neonatal or infant,5 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,959,32285,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35050211,,GSM5691526,,,val,hesrt,samples/GSE188888/GSM5691526,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -994,8 +994,8 @@ GSM5691527,GSE188888,GSE188888,"Characterizing Neonatal Heart Maturation, Regene GSM5691528,GSE188888,GSE188888,"Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,P2 apical resection + 14 days,neonatal or infant,age rule: postnatal day,neonatal or infant,17 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1722,32285,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35050211,,GSM5691528,,,val,hesrt,samples/GSE188888/GSM5691528,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5691529,GSE188888,GSE188888,"Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,P2 apical resection + 21 days,juvenile,age rule: postnatal day,juvenile,24 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2095,32285,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35050211,,GSM5691529,,,val,hesrt,samples/GSE188888/GSM5691529,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM5693665,GSE189042,GSE189042,Spatial transcriptome analysis reveals the lymph node atlas of breast cancer metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,lymph node,metastasis,MONDO:0021115,luminal B breast carcinoma,disease,luna,breast cancer,untreated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4346,33538,counts,pixel,4.135948388188244,platform_constant,True,H&E,4.135948388188244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM5693665,,,train,hesrt,samples/GSE189042/GSM5693665,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5695828,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,Ulcerative Colitis,Inflamed,adult,age rule: bare number read as years,adult,33,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2249,33538,counts,pixel,0.4444400549347141,platform_constant,True,H&E,0.5000022964684199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695828,,,train,hesrt,samples/GSE189184/GSM5695828,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5695829,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,Ulcerative Colitis,Inflamed,adult,age rule: bare number read as years,adult,53,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2575,33538,counts,pixel,0.4444400549347141,platform_constant,True,H&E,0.5000022964684199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695829,,,train,hesrt,samples/GSE189184/GSM5695829,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5695828,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,Ulcerative Colitis,Inflamed,adult,age rule: bare number read as years,adult,33,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2249,33538,counts,pixel,0.44444005493471417,platform_constant,True,H&E,0.5000022964684199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695828,,,train,hesrt,samples/GSE189184/GSM5695828,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5695829,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,Ulcerative Colitis,Inflamed,adult,age rule: bare number read as years,adult,53,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2575,33538,counts,pixel,0.44444005493471417,platform_constant,True,H&E,0.5000022964684199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695829,,,train,hesrt,samples/GSE189184/GSM5695829,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5695830,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,Checkpoint inhibitor induced colitis,Inflamed,adult,age rule: bare number read as years,adult,47,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1225,33538,counts,pixel,0.4464241228685168,platform_constant,True,H&E,0.4999880725301246,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695830,,,train,hesrt,samples/GSE189184/GSM5695830,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5695831,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,Checkpoint inhibitor induced colitis,Inflamed,aged,age rule: bare number read as years,aged,72,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1207,33538,counts,pixel,0.4464241228685168,platform_constant,True,H&E,0.4999880725301246,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695831,,,train,hesrt,samples/GSE189184/GSM5695831,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM5695832,GSE189184+GSE189185,GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,Checkpoint inhibitor induced colitis,Inflamed,aged,age rule: bare number read as years,aged,74,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1837,33538,counts,pixel,0.9038399867637336,platform_constant,True,H&E,0.9038399867637336,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38744246,,GSM5695832,,,train,hesrt,samples/GSE189184/GSM5695832,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -1102,17 +1102,17 @@ GSM5713415,GSE190094,GSE190094,High Resolution Slide-seqV2 Spatial Transcriptomi GSM5713416,GSE190094,GSE190094,High Resolution Slide-seqV2 Spatial Transcriptomics Enables Discovery of Disease-Specific Cell Neighborhoods and Pathways,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,kidney cross-section,primary tissue,,,disease,luna,autosomal dominant tubulointersital kidney disease (ADTKD),UMOD-KI/KI,adult,age rule: age with unit,adult,6 month,unknown,,,,,,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,20424,20226,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,35372810,,GSM5713416,,,train,sda-all,samples/GSE190094/GSM5713416,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5726156,GSE190595,GSE190595,10X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient/deficient mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3934,31053,counts,pixel,0.9748793052273198,platform_constant,True,H&E,0.9748793052273198,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35149721,,GSM5726156,,,train,hesrt,samples/GSE190595/GSM5726156,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.2, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5726157,GSE190595,GSE190595,10X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient/deficient mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,perturbation,luna,,B cell depleted,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3547,31053,counts,pixel,0.9748793052273198,platform_constant,True,H&E,0.9748793052273198,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35149721,,GSM5726157,,,train,hesrt,samples/GSE190595/GSM5726157,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM5732357,GSE190811+GSE190870,GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human breast cancer,metastasis,MONDO:0004953;MONDO:0024339,invasive ductal breast carcinoma;lymph node neoplasm,disease,luna,Invasive ductal carcinoma,Lymph node metastasis,not stated,luna,not stated,,unknown,,GSE190811:Patient_3,Patient_3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3055,33931,counts,pixel,0.2739684899015425,platform_constant,True,H&E,0.4999933270038245,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36357424,,GSM5732357,,,train,hesrt,samples/GSE190811/GSM5732357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5732357,GSE190811+GSE190870,GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human breast cancer,metastasis,MONDO:0004953;MONDO:0024339,invasive ductal breast carcinoma;lymph node neoplasm,disease,luna,Invasive ductal carcinoma,Lymph node metastasis,not stated,luna,not stated,,unknown,,GSE190811:Patient_3,Patient_3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3055,33931,counts,pixel,0.27396848990154254,platform_constant,True,H&E,0.49999332700382454,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36357424,,GSM5732357,,,train,hesrt,samples/GSE190811/GSM5732357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5732358,GSE190811+GSE190870,GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human breast cancer,metastasis,MONDO:0004953;MONDO:0024339,invasive ductal breast carcinoma;lymph node neoplasm,disease,luna,Invasive ductal carcinoma,Lymph node metastasis,not stated,luna,not stated,,unknown,,GSE190811:Patient_6,Patient_6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4454,33931,counts,pixel,0.2739715745128152,platform_constant,True,H&E,0.4999964352213171,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36357424,,GSM5732358,,,train,hesrt,samples/GSE190811/GSM5732358,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5732359,GSE190811+GSE190870,GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human breast cancer,metastasis,MONDO:0004953;MONDO:0024339,invasive ductal breast carcinoma;lymph node neoplasm,disease,luna,Invasive ductal carcinoma,Lymph node metastasis,not stated,luna,not stated,,unknown,,GSE190811:Patient_7,Patient_7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4859,33931,counts,pixel,0.2739715745128152,platform_constant,True,H&E,0.499998956428775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36357424,,GSM5732359,,,train,hesrt,samples/GSE190811/GSM5732359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5732359,GSE190811+GSE190870,GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human breast cancer,metastasis,MONDO:0004953;MONDO:0024339,invasive ductal breast carcinoma;lymph node neoplasm,disease,luna,Invasive ductal carcinoma,Lymph node metastasis,not stated,luna,not stated,,unknown,,GSE190811:Patient_7,Patient_7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4859,33931,counts,pixel,0.2739715745128152,platform_constant,True,H&E,0.49999895642877507,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36357424,,GSM5732359,,,train,hesrt,samples/GSE190811/GSM5732359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5732360,GSE190811+GSE190870,GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human breast cancer,metastasis,MONDO:0004953;MONDO:0024339,invasive ductal breast carcinoma;lymph node neoplasm,disease,luna,Invasive ductal carcinoma,Lymph node metastasis,not stated,luna,not stated,,unknown,,GSE190811:Patient_8,Patient_8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4553,33931,counts,pixel,0.273972602739726,platform_constant,True,H&E,0.5000061650000617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36357424,,GSM5732360,,,train,hesrt,samples/GSE190811/GSM5732360,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5733935,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Rostral/cross sections/7&14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1498,31053,counts,um,1.0,verified,True,H&E-like (heuristic),4.0574300753522206,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733935,,,train,sda-all,samples/GSE190910/GSM5733935,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM5733936,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/coronal sections/7dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2005,31053,counts,um,1.0,verified,True,blue bright-field stain (heuristic),3.9755072576914254,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733936,,,train,sda-all,samples/GSE190910/GSM5733936,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM5733937,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/cross sections/7&14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1540,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.9528855539986263,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733937,,,train,sda-all,samples/GSE190910/GSM5733937,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM5733936,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/coronal sections/7dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2005,31053,counts,um,1.0,verified,True,blue bright-field stain (heuristic),3.9755072576914263,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733936,,,train,sda-all,samples/GSE190910/GSM5733936,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM5733937,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/cross sections/7&14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1540,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.9528855539986267,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733937,,,train,sda-all,samples/GSE190910/GSM5733937,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM5733938,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Caudal/cross sections/7&14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1514,31053,counts,um,1.0,verified,True,H&E-like (heuristic),4.003624312490957,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733938,,,train,sda-all,samples/GSE190910/GSM5733938,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM5733939,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/coronal sections/14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2170,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.988168708398903,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733939,,,train,sda-all,samples/GSE190910/GSM5733939,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5733939,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/coronal sections/14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2170,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.9881687083989026,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733939,,,train,sda-all,samples/GSE190910/GSM5733939,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5733940,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,,,normal,luna,,Sham/Central/cross sections/Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,756,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.9642196370803706,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733940,,,train,sda-all,samples/GSE190910/GSM5733940,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM5733941,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,,,normal,luna,,Sham/Central/coronal & cross sections/Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1380,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.9882032200995,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733941,,,train,sda-all,samples/GSE190910/GSM5733941,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM5733941,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,,,normal,luna,,Sham/Central/coronal & cross sections/Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1380,31053,counts,um,1.0,verified,True,H&E-like (heuristic),3.9882032200994995,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733941,,,train,sda-all,samples/GSE190910/GSM5733941,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5733942,GSE190910,GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord tissue,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,SCI/Central/coronal sections/7&14dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2650,31053,counts,um,1.0,verified,True,H&E-like (heuristic),4.050420353701036,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM5733942,,,train,sda-all,samples/GSE190910/GSM5733942,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM6657936,GSE192402,GSE192402,"Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Melanoma subcutaneous metastasis,metastasis,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE192402:ribas,ribas,,,Slide-seq,release v3,Slide-seqV2,sequencing-based,SlideSeqV2,,,bead,33760,27987,counts,pixel,,unresolved,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,36624340,,GSM6657936,,,train,sda-all,samples/GSE192402/GSM6657936,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6657937,GSE192402,GSE192402,"Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Melanoma subcutaneous metastasis,metastasis,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE192402:ribas,ribas,,,Slide-seq,release v3,Slide-seqV2,sequencing-based,SlideSeqV2,,,bead,15051,25531,counts,pixel,,unresolved,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,36624340,,GSM6657937,,,train,sda-all,samples/GSE192402/GSM6657937,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -1137,8 +1137,8 @@ GSM5747454,GSE192460,GSE192460,Single-cell and spatial architecture of human tis GSM5747455,GSE192460,GSE192460,Single-cell and spatial architecture of human tissue granulomas reveals an aberrant immune-regulatory program underlying sarcoidosis [spatial transcriptomics data],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,,primary tissue,MONDO:0019338,sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,GSE192460:P12,P12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,58,36601,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36750099,,GSM5747455,,,val,sda-all,samples/GSE192460/GSM5747455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5747456,GSE192460,GSE192460,Single-cell and spatial architecture of human tissue granulomas reveals an aberrant immune-regulatory program underlying sarcoidosis [spatial transcriptomics data],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,,primary tissue,MONDO:0019338,sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,GSE192460:P13,P13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,705,36601,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36750099,,GSM5747456,,,val,sda-all,samples/GSE192460/GSM5747456,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5747457,GSE192460,GSE192460,Single-cell and spatial architecture of human tissue granulomas reveals an aberrant immune-regulatory program underlying sarcoidosis [spatial transcriptomics data],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,,primary tissue,MONDO:0019338,sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,GSE192460:P13,P13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,667,36601,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36750099,,GSM5747457,,,val,sda-all,samples/GSE192460/GSM5747457,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM5764414,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1646,31053,counts,pixel,4.907124438675679,platform_constant,True,H&E,4.907124438675679,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764414,,,train,hesrt,samples/GSE192742/GSM5764414,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5764415,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1651,31053,counts,pixel,4.907124438675679,platform_constant,True,H&E,4.907124438675679,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764415,,,train,hesrt,samples/GSE192742/GSM5764415,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5764414,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1646,31053,counts,pixel,4.9071244386756785,platform_constant,True,H&E,4.9071244386756785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764414,,,train,hesrt,samples/GSE192742/GSM5764414,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5764415,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1651,31053,counts,pixel,4.9071244386756785,platform_constant,True,H&E,4.9071244386756785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764415,,,train,hesrt,samples/GSE192742/GSM5764415,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5764416,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1604,31053,counts,pixel,4.651302314530204,platform_constant,True,H&E,4.651302314530204,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764416,,,train,hesrt,samples/GSE192742/GSM5764416,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5764417,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2286,31053,counts,pixel,4.651302314530204,platform_constant,True,H&E,4.651302314530204,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764417,,,train,hesrt,samples/GSE192742/GSM5764417,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5764418,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0016479,capsule of liver,liver,primary tissue,,,normal,luna,,StSt,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,438,31053,counts,pixel,4.501062208462857,platform_constant,True,H&E,4.501062208462857,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764418,,,train,hesrt,samples/GSE192742/GSM5764418,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.64, ""life_stage"": 1.0}",, @@ -1151,7 +1151,7 @@ GSM5764424,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolu GSM5764425,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,disease,luna,,Steatotic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,532,32738,counts,pixel,4.4980088185324965,platform_constant,True,H&E,4.4980088185324965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764425,,,train,hesrt,samples/GSE192742/GSM5764425,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM5764426,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2501,32738,counts,pixel,4.575176396326853,platform_constant,True,H&E,4.575176396326853,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764426,,,train,hesrt,samples/GSE192742/GSM5764426,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5764427,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,disease,luna,,Steatotic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1185,32738,counts,pixel,4.819864254554368,platform_constant,True,H&E,4.819864254554368,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764427,,,train,hesrt,samples/GSE192742/GSM5764427,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM5764428,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1423,32738,counts,pixel,4.504602040236232,platform_constant,True,H&E,4.504602040236232,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764428,,,train,hesrt,samples/GSE192742/GSM5764428,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5764428,GSE192742,GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1423,32738,counts,pixel,4.5046020402362315,platform_constant,True,H&E,4.5046020402362315,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35021063;36304458,,GSM5764428,,,train,hesrt,samples/GSE192742/GSM5764428,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5773453,GSE193107,GSE193107,Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Young,adult,age rule: age with unit,juvenile,2 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3259,32285,counts,pixel,0.5469464442041558,platform_constant,True,H&E,0.5469464442041558,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38372175,,GSM5773453,,,train,hesrt,samples/GSE193107/GSM5773453,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.51}",life_stage,low_confidence_annotation GSM5773454,GSE193107,GSE193107,Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Young,adult,age rule: age with unit,adult,2 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3593,32285,counts,pixel,0.546448087431694,platform_constant,True,H&E,0.546448087431694,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38372175,,GSM5773454,,,train,hesrt,samples/GSE193107/GSM5773454,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 0.39}",life_stage,low_confidence_annotation GSM5773455,GSE193107,GSE193107,Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Young,adult,age rule: age with unit,not stated,2 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3400,32285,counts,pixel,0.5469464442041558,platform_constant,True,H&E,0.5469464442041558,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38372175,,GSM5773455,,,train,hesrt,samples/GSE193107/GSM5773455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.86, ""life_stage"": 0.28}",life_stage,low_confidence_annotation @@ -1165,15 +1165,15 @@ GSM5808055,GSE193460,GSE193460,Perturb-map coupled with spatial transcriptomics GSM5808056,GSE193460,GSE193460,Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,WT-Cas9,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1244,32289,counts,um,1.0,verified,True,undetermined,4.348513289147683,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35290801,,GSM5808056,,,train,sda-all,samples/GSE193460/GSM5808056,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.88, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5808057,GSE193460,GSE193460,Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,WT-Cas9,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2546,32289,counts,um,1.0,verified,True,undetermined,4.62795215600362,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,35290801,,GSM5808057,,,train,sda-all,samples/GSE193460/GSM5808057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5833528,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0100342,malignant glioma,disease,luna,"Diffuse midline glioma, H3K27M-mutant",Recurrent,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4337,36601,counts,pixel,4.124077627558917,platform_constant,True,H&E,4.124077627558917,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833528,,,train,hesrt,samples/GSE194329/GSM5833528,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5833529,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0100342,malignant glioma,disease,luna,"Diffuse midline glioma, H3K27M-mutant",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2305,36601,counts,pixel,3.8600119319307855,platform_constant,True,H&E,3.8600119319307855,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833529,,,train,hesrt,samples/GSE194329/GSM5833529,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5833529,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0100342,malignant glioma,disease,luna,"Diffuse midline glioma, H3K27M-mutant",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2305,36601,counts,pixel,3.8600119319307864,platform_constant,True,H&E,3.8600119319307864,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833529,,,train,hesrt,samples/GSE194329/GSM5833529,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5833530,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0100342,malignant glioma,disease,luna,"Diffuse midline glioma, H3K27M-mutant",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1063,36601,counts,pixel,4.028032315030445,platform_constant,True,H&E,4.028032315030445,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833530,,,train,hesrt,samples/GSE194329/GSM5833530,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM5833531,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0100342,malignant glioma,disease,luna,"Diffuse midline glioma, H3K27M-mutant",Recurrent,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1056,36601,counts,pixel,4.010919648524724,platform_constant,True,H&E,4.010919648524724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833531,,,train,hesrt,samples/GSE194329/GSM5833531,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5833532,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0100342,malignant glioma,disease,luna,"Diffuse midline glioma, H3K27M-mutant",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2128,36601,counts,pixel,4.011893855633693,platform_constant,True,H&E,4.011893855633693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833532,,,train,hesrt,samples/GSE194329/GSM5833532,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5833533,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,Secondary glioblastoma,Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4764,36601,counts,pixel,4.137084733134966,platform_constant,True,H&E,4.137084733134966,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833533,,,train,hesrt,samples/GSE194329/GSM5833533,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5833534,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,"Glioblastoma, IDH-wt",Recurrent,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2891,36601,counts,pixel,4.174390192974844,platform_constant,True,H&E,4.174390192974844,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833534,,,train,hesrt,samples/GSE194329/GSM5833534,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5833535,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,"Glioblastoma, IDH-wt",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1775,36601,counts,pixel,4.058433490987309,platform_constant,True,H&E,4.058433490987309,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833535,,,train,hesrt,samples/GSE194329/GSM5833535,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5833536,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,Secondary glioblastoma,Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2540,36601,counts,pixel,3.945698561823325,platform_constant,True,H&E,3.945698561823325,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833536,,,train,hesrt,samples/GSE194329/GSM5833536,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5833537,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,"Glioblastoma, IDH-wt",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2203,36601,counts,pixel,3.959005040051905,platform_constant,True,H&E,3.959005040051905,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833537,,,train,hesrt,samples/GSE194329/GSM5833537,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5833536,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,Secondary glioblastoma,Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2540,36601,counts,pixel,3.9456985618233245,platform_constant,True,H&E,3.9456985618233245,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833536,,,train,hesrt,samples/GSE194329/GSM5833536,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5833537,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,"Glioblastoma, IDH-wt",Primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2203,36601,counts,pixel,3.9590050400519052,platform_constant,True,H&E,3.9590050400519052,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833537,,,train,hesrt,samples/GSE194329/GSM5833537,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5833538,GSE194329,GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0100342,malignant glioma,disease,luna,,Peritumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2171,36601,counts,pixel,3.9366665774224336,platform_constant,True,H&E,3.9366665774224336,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36823172;40483536,,GSM5833538,,,train,hesrt,samples/GSE194329/GSM5833538,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM5833739,GSE194338,GSE194338,Excitatory SST neurons in the medial paralemniscal nucleus control repetitive self-grooming and encode reward,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,,adult,age rule: postnatal day,adult,60 postnatal days,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3651,32286,counts,pixel,3.894000023519748,platform_constant,True,H&E,3.894000023519748,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM5833739,,,train,hesrt,samples/GSE194338/GSM5833739,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.84, ""life_stage"": 0.81}",disease_status,low_confidence_annotation GSM7016921,GSE195575,GSE195575,mousemodel_Heptablastoma spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,hepatoblastoma,tumour tissue,MONDO:0018666,hepatoblastoma,disease,luna,hepatoblastoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1890,31053,counts,pixel,0.8928215559724615,platform_constant,True,H&E,0.8928215559724615,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37414763,,GSM7016921,,,test,hesrt,samples/GSE195575/GSM7016921,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.77, ""life_stage"": 1.0}",, @@ -1186,11 +1186,11 @@ GSM5841550,GSE195598,GSE195598,Spatial Transcriptomics of Joint-Draining Poplite GSM5841551,GSE195598,GSE195598,Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0001543,popliteal lymph node,Popliteal Lymph Nodes,primary tissue,MONDO:0005578,arthritic joint disease,disease,luna,Early arthritis,Early arthritis,adult,age rule: age with unit,adult,5.5 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1489,32287,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37691918,,GSM5841551,,,train,hesrt,samples/GSE195598/GSM5841551,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5841552,GSE195598,GSE195598,Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0001543,popliteal lymph node,Popliteal Lymph Nodes,primary tissue,MONDO:0005578,arthritic joint disease,disease,luna,Advanced arthritis,Advanced arthritis,adult,age rule: age with unit,adult,8.5–9 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2015,32287,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37691918,,GSM5841552,,,train,hesrt,samples/GSE195598/GSM5841552,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5841553,GSE195598,GSE195598,Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0001543,popliteal lymph node,Popliteal Lymph Nodes,primary tissue,MONDO:0005578,arthritic joint disease,disease,luna,Advanced arthritis,Advanced arthritis,adult,age rule: age with unit,adult,8.5–9 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1782,32287,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37691918,,GSM5841553,,,train,hesrt,samples/GSE195598/GSM5841553,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5844711,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,neonatal or infant,age rule: bare number read as years,neonatal or infant,0.5,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2236,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.499994870678404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844711,,,val,hesrt,samples/GSE195661/GSM5844711,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5844711,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,neonatal or infant,age rule: bare number read as years,neonatal or infant,0.5,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2236,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.49999487067840404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844711,,,val,hesrt,samples/GSE195661/GSM5844711,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5844712,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,juvenile,age rule: bare number read as years,juvenile,2,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1959,36601,counts,pixel,0.8,platform_constant,True,H&E,0.8,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844712,,,val,hesrt,samples/GSE195661/GSM5844712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM5844713,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,juvenile,age rule: bare number read as years,juvenile,2,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,979,36601,counts,pixel,4.143999979611512,platform_constant,True,H&E,4.143999979611512,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844713,,,val,hesrt,samples/GSE195661/GSM5844713,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM5844714,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,neonatal or infant,age rule: bare number read as years,neonatal or infant,0.9,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3060,36601,counts,pixel,0.8,platform_constant,True,H&E,0.8,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844714,,,val,hesrt,samples/GSE195661/GSM5844714,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM5844715,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,juvenile,age rule: bare number read as years,juvenile,5,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2705,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.499994870678404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844715,,,val,hesrt,samples/GSE195661/GSM5844715,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM5844715,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,juvenile,age rule: bare number read as years,juvenile,5,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2705,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.49999487067840404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844715,,,val,hesrt,samples/GSE195661/GSM5844715,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5844716,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,juvenile,age rule: bare number read as years,juvenile,6,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1616,36601,counts,pixel,0.8,platform_constant,True,H&E,0.8,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844716,,,val,hesrt,samples/GSE195661/GSM5844716,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM5844717,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,neonatal or infant,age rule: bare number read as years,neonatal or infant,0.6,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3027,36601,counts,pixel,0.8,platform_constant,True,H&E,0.8,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844717,,,val,hesrt,samples/GSE195661/GSM5844717,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5844718,GSE195661,GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,surgically resected tumor,tumour tissue,MONDO:0016698,ependymoma,disease,luna,ependymoma PFA subgroup,,juvenile,age rule: bare number read as years,juvenile,1.9,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1842,36601,counts,pixel,4.143999979611512,platform_constant,True,H&E,4.143999979611512,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36215273,,GSM5844718,,,val,hesrt,samples/GSE195661/GSM5844718,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1217,7 +1217,7 @@ GSM5907089,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell GSM5907090,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Atopic dermatitis non-lesional skin,primary tissue,MONDO:0004980,atopic eczema,disease,luna,atopic dermatitis,non-lesional,not stated,luna,not stated,,unknown,,GSE197023:AD_7,AD_7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,878,21587,counts,pixel,4.4891151937915765,platform_constant,True,H&E,4.4891151937915765,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907090,,,train,hesrt,samples/GSE197023/GSM5907090,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5907091,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_1,HE_1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,527,21587,counts,pixel,4.504504504504495,platform_constant,True,H&E,4.504504504504495,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907091,,,train,hesrt,samples/GSE197023/GSM5907091,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5907092,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_2,HE_2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,722,21587,counts,pixel,4.587155963302738,platform_constant,True,H&E,4.587155963302738,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907092,,,train,hesrt,samples/GSE197023/GSM5907092,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM5907093,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_3,HE_3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,629,21587,counts,pixel,4.336683255770343,platform_constant,True,H&E,4.336683255770343,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907093,,,train,hesrt,samples/GSE197023/GSM5907093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM5907093,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_3,HE_3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,629,21587,counts,pixel,4.3366832557703425,platform_constant,True,H&E,4.3366832557703425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907093,,,train,hesrt,samples/GSE197023/GSM5907093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5907094,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_4,HE_4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,838,21587,counts,pixel,4.318762936749759,platform_constant,True,H&E,4.318762936749759,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907094,,,train,hesrt,samples/GSE197023/GSM5907094,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5907095,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_5,HE_5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,653,21587,counts,pixel,4.327833734016389,platform_constant,True,H&E,4.327833734016389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907095,,,train,hesrt,samples/GSE197023/GSM5907095,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.52, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM5907096,GSE197023,GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,healthy,not stated,luna,not stated,,unknown,,GSE197023:HE_6,HE_6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,788,21587,counts,pixel,4.29973791938996,platform_constant,True,H&E,4.29973791938996,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37312623,10.1111/all.15781,GSM5907096,,,train,hesrt,samples/GSE197023/GSM5907096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -1304,7 +1304,7 @@ GSM5935794,GSE198012,GSE198012,Obesity disrupts innate-adaptive immune network p GSM5935795,GSE198012,GSE198012,Obesity disrupts innate-adaptive immune network patterning in adipose tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,adipose tissue,luna,UBERON:0001347,white adipose tissue,white adipose,primary tissue,MONDO:0011122,obesity disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,1994,31053,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,37651193,,GSM5935795,,,val,sda-all,samples/GSE198012/GSM5935795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM5939574,GSE198128,GSE198128,Spatiotemporal transcriptomes of orchid flowers,Phalaenopsis aphrodite,212056,,Phalaenopsis aphrodite,212056,,False,False,GEO organism field,Phalaenopsis aphrodite,,plant,luna,,,Flower,primary tissue,,,normal,luna,,,not stated,luna,not stated,bud 1-6,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2379,28903,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.0646739289732485,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36095130,,GSM5939574,,,train,sda-all,samples/GSE198128/GSM5939574,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 0.59}",life_stage,low_confidence_annotation GSM5939575,GSE198128,GSE198128,Spatiotemporal transcriptomes of orchid flowers,Phalaenopsis aphrodite,212056,,Phalaenopsis aphrodite,212056,,False,False,GEO organism field,Phalaenopsis aphrodite,,plant,luna,,,Flower,primary tissue,,,normal,luna,,,not stated,luna,not stated,bud 7,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2467,28903,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.022652073473422,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36095130,,GSM5939575,,,train,sda-all,samples/GSE198128/GSM5939575,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.58}",life_stage,low_confidence_annotation -GSM5939576,GSE198128,GSE198128,Spatiotemporal transcriptomes of orchid flowers,Phalaenopsis aphrodite,212056,,Phalaenopsis aphrodite,212056,,False,False,GEO organism field,Phalaenopsis aphrodite,,plant,luna,,,Flower,primary tissue,,,normal,luna,,,not stated,luna,not stated,bud 8,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3407,28903,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.103627254483476,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36095130,,GSM5939576,,,train,sda-all,samples/GSE198128/GSM5939576,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.39}",life_stage,low_confidence_annotation +GSM5939576,GSE198128,GSE198128,Spatiotemporal transcriptomes of orchid flowers,Phalaenopsis aphrodite,212056,,Phalaenopsis aphrodite,212056,,False,False,GEO organism field,Phalaenopsis aphrodite,,plant,luna,,,Flower,primary tissue,,,normal,luna,,,not stated,luna,not stated,bud 8,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3407,28903,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.1036272544834755,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36095130,,GSM5939576,,,train,sda-all,samples/GSE198128/GSM5939576,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.39}",life_stage,low_confidence_annotation GSM5945505,GSE198353,GSE198353,Integration of whole transcriptome spatial profiling with protein markers,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,mouse spleen,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2653,32306,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.766195386948848,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36593397,,GSM5945505,,,train,sda-all,samples/GSE198353/GSM5945505,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM5945507,GSE198353,GSE198353,Integration of whole transcriptome spatial profiling with protein markers,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,mouse spleen,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2768,32306,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.765819696129341,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36593397,,GSM5945507,,,train,sda-all,samples/GSE198353/GSM5945507,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM5945509,GSE198353,GSE198353,Integration of whole transcriptome spatial profiling with protein markers,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0000310,breast,mouse breast tumor,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1978,32286,counts,um,1.0,verified,True,fluorescence: green (heuristic),4.349964703275878,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36593397,,GSM5945509,,,train,sda-all,samples/GSE198353/GSM5945509,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, @@ -1402,17 +1402,17 @@ GSM6177618,GSE203612,GSE203612,Cancer cell states recur across tumor types and f GSM6177623,GSE203612,GSE203612,Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001295,endometrium,Endometrium,tumour tissue,MONDO:0002447,endometrial carcinoma,disease,luna,Endometrial carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1351,33538,counts,pixel,4.367445372552445,platform_constant,True,H&E,4.367445372552445,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35931863,,GSM6177623,,,train,hesrt,samples/GSE203612/GSM6177623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6177624,GSE203612,GSE203612,Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Xenograft,xenograft,MONDO:0005105;MONDO:0004992,melanoma;cancer,disease,luna,melanoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3039,41797,counts,pixel,4.168554277009604,platform_constant,True,H&E,4.168554277009604,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35931863,,GSM6177624,,,train,hesrt,samples/GSE203612/GSM6177624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM6177625,GSE203612,GSE203612,Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,UBERON:0003103,compound organ,Xenograft,xenograft,MONDO:0005105;MONDO:0004992,melanoma;cancer,disease,luna,melanoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2556,41797,counts,pixel,4.203667296842034,platform_constant,True,H&E,4.203667296842034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,35931863,,GSM6177625,,,train,hesrt,samples/GSE203612/GSM6177625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.2, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM6204635,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2387,19831,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6204635,,,train,sda-all,samples/GSE205054/GSM6204635,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6204636,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2373,19859,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6204636,,,train,sda-all,samples/GSE205054/GSM6204636,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6204637,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,8886,21478,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6204637,,,train,sda-all,samples/GSE205054/GSM6204637,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.45, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM6799937,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2187,20900,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6799937,,,train,sda-all,samples/GSE205054/GSM6799937,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM6206885,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0002421,hippocampal formation,Human hippocampus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,29293,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6206885,,,train,sda-all,samples/GSE205055/GSM6206885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.43, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6753041,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2498,20046,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753041,,,train,sda-all,samples/GSE205055/GSM6753041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6753042,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2499,18718,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753042,,,train,sda-all,samples/GSE205055/GSM6753042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.99, ""life_stage"": 0.98}",, -GSM6753043,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,9215,22914,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753043,,,train,sda-all,samples/GSE205055/GSM6753043,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation -GSM6753044,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,9752,25881,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753044,,,train,sda-all,samples/GSE205055/GSM6753044,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.98, ""life_stage"": 0.71}",, -GSM6753045,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,9370,23415,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753045,,,train,sda-all,samples/GSE205055/GSM6753045,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 0.84}",, -GSM6753046,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,9548,22731,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753046,,,train,sda-all,samples/GSE205055/GSM6753046,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 0.8}",, +GSM6204635,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2387,19831,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6204635,,,train,sda-all,samples/GSE205054/GSM6204635,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6204636,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2373,19859,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6204636,,,train,sda-all,samples/GSE205054/GSM6204636,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6204637,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,8886,21478,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6204637,,,train,sda-all,samples/GSE205054/GSM6204637,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.45, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM6799937,GSE205054+GSE205055,GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2187,20900,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6799937,,,train,sda-all,samples/GSE205054/GSM6799937,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM6206885,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0002421,hippocampal formation,Human hippocampus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,29293,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6206885,,,train,sda-all,samples/GSE205055/GSM6206885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.43, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6753041,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2498,20046,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753041,,,train,sda-all,samples/GSE205055/GSM6753041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6753042,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2499,18718,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753042,,,train,sda-all,samples/GSE205055/GSM6753042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.99, ""life_stage"": 0.98}",, +GSM6753043,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,9215,22914,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753043,,,train,sda-all,samples/GSE205055/GSM6753043,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation +GSM6753044,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,9752,25881,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753044,,,train,sda-all,samples/GSE205055/GSM6753044,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.98, ""life_stage"": 0.71}",, +GSM6753045,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,9370,23415,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753045,,,train,sda-all,samples/GSE205055/GSM6753045,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 0.84}",, +GSM6753046,GSE205055,GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,9548,22731,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,36922587;39870864,,GSM6753046,,,train,sda-all,samples/GSE205055/GSM6753046,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 0.8}",, GSM6210023,GSE205307,GSE205307,Single-cell RNA sequencing reveals myeloid and T cell co-stimulation mediated by IL-7 anti-cancer immunotherapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,unknown,luna,,,tissue specimen,primary tissue,MONDO:0004992,cancer,disease,mondo_predicate,,Drug_Control (PBS),adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2221,32285,counts,pixel,4.160651460412479,platform_constant,True,H&E,4.160651460412479,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38424167,10.1038/s41416-024-02617-7,GSM6210023,,,test,hesrt,samples/GSE205307/GSM6210023,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.73, ""disease_status"": 0.27, ""uberon"": NaN, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6210024,GSE205307,GSE205307,Single-cell RNA sequencing reveals myeloid and T cell co-stimulation mediated by IL-7 anti-cancer immunotherapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,unknown,luna,,,tissue specimen,unknown,MONDO:0004992,cancer,disease,mondo_predicate (Luna: perturbation),,Drug_rIL7 (recombinant IL7),adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1951,32285,counts,pixel,4.068724069995314,platform_constant,True,H&E,4.068724069995314,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38424167,10.1038/s41416-024-02617-7,GSM6210024,,,test,hesrt,samples/GSE205307/GSM6210024,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 0.47000000000000003, ""disease_status"": 0.88, ""uberon"": NaN, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM6219587,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,PBS,not stated,luna,not stated,,female,Female,,,fresh frozen,OCT embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,721,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM6219587,,,val,sda-all,samples/GSE205707/GSM6219587,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.91, ""life_stage"": 1.0}",, @@ -1424,11 +1424,11 @@ GSM6219592,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dy GSM6219593,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,ITD1,not stated,luna,not stated,,male,Male,,,fresh frozen,OCT embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,633,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM6219593,,,val,sda-all,samples/GSE205707/GSM6219593,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM6219594,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,ITD1,not stated,luna,not stated,,male,Male,,,fresh frozen,OCT embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,895,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM6219594,,,val,sda-all,samples/GSE205707/GSM6219594,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM6896311,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,595,1000,counts,pixel,0.3071343144389113,platform_constant,True,H&E,0.5000062390298768,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896311,,,val,hesrt,samples/GSE205707/GSM6896311,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM6896312,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,455,1000,counts,pixel,0.308068614618316,platform_constant,True,H&E,0.5000068389065571,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896312,,,val,hesrt,samples/GSE205707/GSM6896312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.92, ""life_stage"": 1.0}",, -GSM6896313,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,837,1000,counts,pixel,0.3069835382986678,platform_constant,True,H&E,0.4999913105374158,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896313,,,val,hesrt,samples/GSE205707/GSM6896313,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.9400000000000001, ""life_stage"": 0.97}",, -GSM6896314,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,718,1000,counts,pixel,0.3071651705322978,platform_constant,True,H&E,0.4999971118002034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896314,,,val,hesrt,samples/GSE205707/GSM6896314,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.96, ""life_stage"": 0.97}",, +GSM6896312,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,455,1000,counts,pixel,0.30806861461831603,platform_constant,True,H&E,0.5000068389065571,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896312,,,val,hesrt,samples/GSE205707/GSM6896312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM6896313,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,837,1000,counts,pixel,0.30698353829866787,platform_constant,True,H&E,0.4999913105374158,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896313,,,val,hesrt,samples/GSE205707/GSM6896313,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.9400000000000001, ""life_stage"": 0.97}",, +GSM6896314,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,718,1000,counts,pixel,0.30716517053229786,platform_constant,True,H&E,0.4999971118002034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896314,,,val,hesrt,samples/GSE205707/GSM6896314,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.96, ""life_stage"": 0.97}",, GSM6896315,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2005,1000,counts,pixel,0.3077052651812414,platform_constant,True,H&E,0.4999895398119399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896315,,,val,hesrt,samples/GSE205707/GSM6896315,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 0.98, ""life_stage"": 0.98}",disease_status,low_confidence_annotation -GSM6896316,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2402,1000,counts,pixel,0.3069243482901714,platform_constant,True,H&E,0.4999965460677004,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896316,,,val,hesrt,samples/GSE205707/GSM6896316,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 0.97, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM6896316,GSE205707,GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2402,1000,counts,pixel,0.3069243482901714,platform_constant,True,H&E,0.49999654606770044,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1172/jci.insight.162835,GSM6896316,,,val,hesrt,samples/GSE205707/GSM6896316,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 0.97, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6248646,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2021,17943,counts,pixel,4.252777902405432,platform_constant,True,H&E,4.252777902405432,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248646,,,train,hesrt,samples/GSE206245/GSM6248646,sda-tissue-disease-2.3,"{""organ"": 0.71, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6248647,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2614,17943,counts,pixel,4.053282778974647,platform_constant,True,H&E,4.053282778974647,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248647,,,train,hesrt,samples/GSE206245/GSM6248647,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6248648,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1939,17943,counts,pixel,4.103030398712962,platform_constant,True,H&E,4.103030398712962,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248648,,,train,hesrt,samples/GSE206245/GSM6248648,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1438,7 +1438,7 @@ GSM6248651,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Re GSM6248652,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1272,17943,counts,pixel,4.254238790482051,platform_constant,True,H&E,4.254238790482051,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248652,,,train,hesrt,samples/GSE206245/GSM6248652,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6248653,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3668,17943,counts,pixel,4.384673474017531,platform_constant,True,H&E,4.384673474017531,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248653,,,train,hesrt,samples/GSE206245/GSM6248653,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6248654,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1556,17943,counts,pixel,4.345706991745568,platform_constant,True,H&E,4.345706991745568,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248654,,,train,hesrt,samples/GSE206245/GSM6248654,sda-tissue-disease-2.3,"{""organ"": 0.81, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6248655,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2067,17943,counts,pixel,4.298013043091506,platform_constant,True,H&E,4.298013043091506,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248655,,,train,hesrt,samples/GSE206245/GSM6248655,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6248655,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2067,17943,counts,pixel,4.2980130430915064,platform_constant,True,H&E,4.2980130430915064,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248655,,,train,hesrt,samples/GSE206245/GSM6248655,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6248656,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1977,17943,counts,pixel,4.298013043091485,platform_constant,True,H&E,4.298013043091485,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248656,,,train,hesrt,samples/GSE206245/GSM6248656,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6248657,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,Nasopharyngeal carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1086,17943,counts,pixel,4.308618673066466,platform_constant,True,H&E,4.308618673066466,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39231979,,GSM6248657,,,train,hesrt,samples/GSE206245/GSM6248657,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8361988,GSE206245,GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,airway,uberon_chain,UBERON:0001728,nasopharynx,Nasopharynx,tumour tissue,MONDO:0015459,nasopharyngeal carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,6053,30616,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,39231979,,GSM8361988,,,train,sda-all,samples/GSE206245/GSM8361988,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1456,7 +1456,7 @@ GSM7166170,GSE206306,GSE206306,A Spatial Transcriptomic atlas of the human kidne GSM6256810,GSE206552,GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CRLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colorectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3498,36601,counts,pixel,2.900073952828708,platform_constant,True,H&E,2.900073952828708,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37157887,,GSM6256810,,,train,hesrt,samples/GSE206552/GSM6256810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6256811,GSE206552,GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CRLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colorectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3776,36601,counts,pixel,3.224129401095805,platform_constant,True,H&E,3.224129401095805,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37157887,,GSM6256811,,,train,hesrt,samples/GSE206552/GSM6256811,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6256812,GSE206552,GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CRLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colorectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1248,36601,counts,pixel,3.2376195411908806,platform_constant,True,H&E,3.2376195411908806,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37157887,,GSM6256812,,,train,hesrt,samples/GSE206552/GSM6256812,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6256813,GSE206552,GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CRLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colorectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1537,36601,counts,pixel,2.789641763258353,platform_constant,True,H&E,2.789641763258353,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37157887,,GSM6256813,,,train,hesrt,samples/GSE206552/GSM6256813,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6256813,GSE206552,GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CRLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colorectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1537,36601,counts,pixel,2.7896417632583534,platform_constant,True,H&E,2.7896417632583534,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37157887,,GSM6256813,,,train,hesrt,samples/GSE206552/GSM6256813,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6258251,GSE206621,GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0003729,mouth mucosa,Oral mucosa,primary tissue,,,normal,luna,,Health,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,231,36601,counts,pixel,4.255000078249446,platform_constant,True,H&E,4.255000078249446,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36648332,,GSM6258251,,,train,hesrt,samples/GSE206621/GSM6258251,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM6258252,GSE206621,GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0003729,mouth mucosa,Oral mucosa,primary tissue,,,normal,luna,,Health,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,284,36601,counts,pixel,4.186428528099037,platform_constant,True,H&E,4.186428528099037,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36648332,,GSM6258252,,,train,hesrt,samples/GSE206621/GSM6258252,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM6258253,GSE206621,GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0003729,mouth mucosa,Oral mucosa,primary tissue,,,normal,luna,,Health,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,295,36601,counts,pixel,4.169999712687019,platform_constant,True,H&E,4.169999712687019,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36648332,,GSM6258253,,,train,hesrt,samples/GSE206621/GSM6258253,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1466,7 +1466,7 @@ GSM6258256,GSE206621,GSE206621,Mapping the Spatial Dynamics of the Human Oral Mu GSM6258257,GSE206621,GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0003729,mouth mucosa,Oral mucosa,primary tissue,MONDO:0021166,inflammatory disease,disease,luna,periodontitis,disease,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,160,36945,counts,pixel,4.005774593110275,platform_constant,True,H&E,4.005774593110275,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36648332,,GSM6258257,,,train,hesrt,samples/GSE206621/GSM6258257,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6258258,GSE206621,GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0003729,mouth mucosa,Oral mucosa,primary tissue,MONDO:0021166,inflammatory disease,disease,luna,periodontitis,disease,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,501,36945,counts,pixel,4.560032536233237,platform_constant,True,H&E,4.560032536233237,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36648332,,GSM6258258,,,train,hesrt,samples/GSE206621/GSM6258258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM7898096,GSE206787,GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002082,cardiac ventricle,Heart ventricles collected at steady state,primary tissue,,,normal,luna,,steady state (undamaged),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,591,19465,counts,pixel,1.7155305995418189,platform_constant,True,H&E,1.7155305995418189,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38129410,,GSM7898096,,,train,hesrt,samples/GSE206787/GSM7898096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.98, ""life_stage"": 0.54}",life_stage,low_confidence_annotation -GSM7898097,GSE206787,GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002082,cardiac ventricle,Heart ventricles collected 3 days after MI,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,3 days post-myocardial infarction,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1068,19465,counts,pixel,2.246150260624729,platform_constant,True,H&E,2.246150260624729,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38129410,,GSM7898097,,,train,hesrt,samples/GSE206787/GSM7898097,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.64}",, +GSM7898097,GSE206787,GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002082,cardiac ventricle,Heart ventricles collected 3 days after MI,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,3 days post-myocardial infarction,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1068,19465,counts,pixel,2.2461502606247286,platform_constant,True,H&E,2.2461502606247286,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38129410,,GSM7898097,,,train,hesrt,samples/GSE206787/GSM7898097,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.64}",, GSM7898098,GSE206787,GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002082,cardiac ventricle,Heart ventricles collected 7 days after MI,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,7 days post-myocardial infarction,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1245,19465,counts,pixel,2.6507697959168484,platform_constant,True,H&E,2.6507697959168484,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38129410,,GSM7898098,,,train,hesrt,samples/GSE206787/GSM7898098,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.71}",, GSM7898099,GSE206787,GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002082,cardiac ventricle,Heart ventricles collected 14 days after MI,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,14 days post-myocardial infarction,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,948,19465,counts,pixel,2.0632701528265645,platform_constant,True,H&E,2.0632701528265645,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38129410,,GSM7898099,,,train,hesrt,samples/GSE206787/GSM7898099,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.64}",, GSM7984884,GSE206790,GSE206790,Profibrotic subsets of SPP1+ macrophages and POSTN+ fibroblasts contribute to fibrotic scarring in acne keloidalis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,,,adult,age rule: age in years,adult,40 years old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1797,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.166454279906858,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38218364,,GSM7984884,,,train,sda-all,samples/GSE206790/GSM7984884,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.99}",, @@ -1481,25 +1481,25 @@ GSM6281327,GSE207205,GSE207205,Multimodal human thymic profiling reveals traject GSM6294362,GSE207546,GSE207546,Choroid plexus mast cells drive tumor-associated hydrocephalus,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain section,primary tissue,MONDO:0005070;MONDO:0001150,neoplasm;hydrocephalus,disease,luna,,mice injected EO771-VM cells,adult,age rule: age with unit,adult,9-12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3417,25636,counts,um,1.0,verified,True,H&E-like (heuristic),4.980984031467139,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38056463,,GSM6294362,,,train,sda-all,samples/GSE207546/GSM6294362,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.88, ""disease_status"": 0.97, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM6294363,GSE207546,GSE207546,Choroid plexus mast cells drive tumor-associated hydrocephalus,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain section,primary tissue,MONDO:0005070;MONDO:0001150,neoplasm;hydrocephalus,disease,luna,,mice injected EO771-VM cells,adult,age rule: age with unit,adult,9-12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4156,25636,counts,um,1.0,verified,True,H&E-like (heuristic),5.681393823040841,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38056463,,GSM6294363,,,train,sda-all,samples/GSE207546/GSM6294363,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.76, ""disease_status"": 0.97, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM6294364,GSE207546,GSE207546,Choroid plexus mast cells drive tumor-associated hydrocephalus,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain section,primary tissue,MONDO:0005070;MONDO:0001150,neoplasm;hydrocephalus,disease,luna,,mice injected EO771-VM cells,adult,age rule: age with unit,adult,9-12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3201,25636,counts,um,1.0,verified,True,H&E-like (heuristic),4.981471801063524,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38056463,,GSM6294364,,,train,sda-all,samples/GSE207546/GSM6294364,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.74, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM6320933,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1218,39844,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320933,,,train,sda-all,samples/GSE207843/GSM6320933,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320934,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1291,40955,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320934,,,train,sda-all,samples/GSE207843/GSM6320934,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6320935,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1293,30799,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320935,,,train,sda-all,samples/GSE207843/GSM6320935,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6320936,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1296,32266,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320936,,,train,sda-all,samples/GSE207843/GSM6320936,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6320937,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1295,33955,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320937,,,train,sda-all,samples/GSE207843/GSM6320937,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320938,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1291,35797,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320938,,,train,sda-all,samples/GSE207843/GSM6320938,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320939,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1292,37347,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320939,,,train,sda-all,samples/GSE207843/GSM6320939,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320940,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1271,35543,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320940,,,train,sda-all,samples/GSE207843/GSM6320940,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320941,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1285,34211,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320941,,,train,sda-all,samples/GSE207843/GSM6320941,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320942,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1296,28529,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320942,,,train,sda-all,samples/GSE207843/GSM6320942,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320943,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1296,29475,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320943,,,train,sda-all,samples/GSE207843/GSM6320943,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6320944,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1295,27473,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320944,,,train,sda-all,samples/GSE207843/GSM6320944,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320945,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1296,32114,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320945,,,train,sda-all,samples/GSE207843/GSM6320945,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320946,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1293,32898,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320946,,,train,sda-all,samples/GSE207843/GSM6320946,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM6320947,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002037,cerebellum,Cerebellum,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,4 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1296,32224,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320947,,,train,sda-all,samples/GSE207843/GSM6320947,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6320948,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002037,cerebellum,Cerebellum,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,4 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1296,33382,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320948,,,train,sda-all,samples/GSE207843/GSM6320948,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6934374,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1214,21748,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6934374,,,train,sda-all,samples/GSE207843/GSM6934374,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6934375,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1258,23305,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6934375,,,train,sda-all,samples/GSE207843/GSM6934375,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6339631,GSE208253,GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Oral squamous cell carcinoma (OSCC),tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,oral squamous cell carcinoma,Stage IVA,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1185,36601,counts,pixel,3.962432963259441,platform_constant,True,H&E,3.962432963259441,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37596273,,GSM6339631,,,train,hesrt,samples/GSE208253/GSM6339631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6320933,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1218,39844,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320933,,,train,sda-all,samples/GSE207843/GSM6320933,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320934,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1291,40955,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320934,,,train,sda-all,samples/GSE207843/GSM6320934,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6320935,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1293,30799,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320935,,,train,sda-all,samples/GSE207843/GSM6320935,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6320936,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1296,32266,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320936,,,train,sda-all,samples/GSE207843/GSM6320936,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6320937,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1295,33955,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320937,,,train,sda-all,samples/GSE207843/GSM6320937,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320938,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1291,35797,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320938,,,train,sda-all,samples/GSE207843/GSM6320938,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320939,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1292,37347,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320939,,,train,sda-all,samples/GSE207843/GSM6320939,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320940,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1271,35543,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320940,,,train,sda-all,samples/GSE207843/GSM6320940,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320941,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1285,34211,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320941,,,train,sda-all,samples/GSE207843/GSM6320941,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320942,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1296,28529,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320942,,,train,sda-all,samples/GSE207843/GSM6320942,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320943,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1296,29475,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320943,,,train,sda-all,samples/GSE207843/GSM6320943,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6320944,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1295,27473,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320944,,,train,sda-all,samples/GSE207843/GSM6320944,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320945,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1296,32114,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320945,,,train,sda-all,samples/GSE207843/GSM6320945,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320946,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1293,32898,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320946,,,train,sda-all,samples/GSE207843/GSM6320946,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM6320947,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002037,cerebellum,Cerebellum,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,4 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1296,32224,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320947,,,train,sda-all,samples/GSE207843/GSM6320947,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6320948,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002037,cerebellum,Cerebellum,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,4 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1296,33382,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6320948,,,train,sda-all,samples/GSE207843/GSM6320948,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6934374,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1214,21748,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6934374,,,train,sda-all,samples/GSE207843/GSM6934374,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6934375,GSE207843,GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,wild-type,adult,age rule: age with unit,adult,3 months,male,male,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1258,23305,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,36934108,,GSM6934375,,,train,sda-all,samples/GSE207843/GSM6934375,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6339631,GSE208253,GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Oral squamous cell carcinoma (OSCC),tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,oral squamous cell carcinoma,Stage IVA,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1185,36601,counts,pixel,3.9624329632594413,platform_constant,True,H&E,3.9624329632594413,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37596273,,GSM6339631,,,train,hesrt,samples/GSE208253/GSM6339631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6339632,GSE208253,GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Oral squamous cell carcinoma (OSCC),tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,oral squamous cell carcinoma,Stage IVA,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1836,36601,counts,pixel,3.9191809966305695,platform_constant,True,H&E,3.9191809966305695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37596273,,GSM6339632,,,train,hesrt,samples/GSE208253/GSM6339632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6339633,GSE208253,GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Oral squamous cell carcinoma (OSCC),tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,oral squamous cell carcinoma,Stage I,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,969,36601,counts,pixel,4.017586325254635,platform_constant,True,H&E,4.017586325254635,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37596273,,GSM6339633,,,train,hesrt,samples/GSE208253/GSM6339633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM6339634,GSE208253,GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Oral squamous cell carcinoma (OSCC),tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,oral squamous cell carcinoma,Stage IVA,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2046,36601,counts,pixel,4.069213646029788,platform_constant,True,H&E,4.069213646029788,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37596273,,GSM6339634,,,train,hesrt,samples/GSE208253/GSM6339634,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, @@ -1517,20 +1517,20 @@ GSM6368795,GSE208747,GSE208747,Decoding spatial gene activity changes in multipl GSM6368796,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4729,33538,counts,um,1.0,verified,True,H&E,4.0348852214384845,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368796,,,test,sda-all,samples/GSE208747/GSM6368796,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368797,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3550,33538,counts,um,1.0,verified,True,H&E,4.5302386352524096,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368797,,,test,sda-all,samples/GSE208747/GSM6368797,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM6368798,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3067,33538,counts,um,1.0,verified,True,H&E,4.512060788727136,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368798,,,test,sda-all,samples/GSE208747/GSM6368798,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM6368799,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3225,33538,counts,um,1.0,verified,True,H&E,3.959403161986285,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368799,,,test,sda-all,samples/GSE208747/GSM6368799,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM6368800,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3459,33538,counts,um,1.0,verified,True,H&E,4.277782472083652,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368800,,,test,sda-all,samples/GSE208747/GSM6368800,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM6368799,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3225,33538,counts,um,1.0,verified,True,H&E,3.9594031619862844,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368799,,,test,sda-all,samples/GSE208747/GSM6368799,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM6368800,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3459,33538,counts,um,1.0,verified,True,H&E,4.2777824720836515,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368800,,,test,sda-all,samples/GSE208747/GSM6368800,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM6368801,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,,,normal,luna,non-demented control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4831,33538,counts,um,1.0,verified,True,H&E,4.09535203738447,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),,39501035,,GSM6368801,,,test,sda-all,samples/GSE208747/GSM6368801,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM6368804,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4208,33538,counts,um,1.0,verified,True,H&E,4.031362843937651,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),,39501035,,GSM6368804,,,test,sda-all,samples/GSE208747/GSM6368804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368805,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3649,33538,counts,um,1.0,verified,True,H&E,4.032304692785461,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368805,,,test,sda-all,samples/GSE208747/GSM6368805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368806,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3657,33538,counts,um,1.0,verified,True,H&E,3.932381323518317,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368806,,,test,sda-all,samples/GSE208747/GSM6368806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368807,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4702,33538,counts,um,1.0,verified,True,H&E,3.9291674786054585,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368807,,,test,sda-all,samples/GSE208747/GSM6368807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368808,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4895,33538,counts,um,1.0,verified,True,H&E,3.930000258763079,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368808,,,test,sda-all,samples/GSE208747/GSM6368808,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6368809,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3751,33538,counts,um,1.0,verified,True,H&E,3.9339635109136735,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368809,,,test,sda-all,samples/GSE208747/GSM6368809,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6368809,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3751,33538,counts,um,1.0,verified,True,H&E,3.9339635109136744,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368809,,,test,sda-all,samples/GSE208747/GSM6368809,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368810,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4284,33538,counts,um,1.0,verified,True,H&E,4.513088840688379,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368810,,,test,sda-all,samples/GSE208747/GSM6368810,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368811,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4436,33538,counts,um,1.0,verified,True,H&E,4.549125043895784,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368811,,,test,sda-all,samples/GSE208747/GSM6368811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368812,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002316,white matter,white matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3797,33538,counts,um,1.0,verified,True,H&E,4.544577536939472,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368812,,,test,sda-all,samples/GSE208747/GSM6368812,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6368813,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3596,33538,counts,um,1.0,verified,True,H&E,4.235108241841879,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368813,,,test,sda-all,samples/GSE208747/GSM6368813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM6368814,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3068,33538,counts,um,1.0,verified,True,H&E,3.996473892713952,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368814,,,test,sda-all,samples/GSE208747/GSM6368814,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6368814,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3068,33538,counts,um,1.0,verified,True,H&E,3.9964738927139516,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368814,,,test,sda-all,samples/GSE208747/GSM6368814,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6368815,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4549,33538,counts,um,1.0,verified,True,H&E,4.097341705678958,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368815,,,test,sda-all,samples/GSE208747/GSM6368815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6368818,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3167,33538,counts,um,1.0,verified,True,H&E,4.091825332237767,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368818,,,test,sda-all,samples/GSE208747/GSM6368818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6368819,GSE208747,GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002020,gray matter,grey matter,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4673,33538,counts,um,1.0,verified,True,H&E,4.293364886308768,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39501035,,GSM6368819,,,test,sda-all,samples/GSE208747/GSM6368819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1552,50 +1552,50 @@ GSM6380091,GSE209583,GSE209583,"Spatial transcriptomics analysis of wild type, 5 GSM6380092,GSE209583,GSE209583,"Spatial transcriptomics analysis of wild type, 5XFAD mice, 5XFAD mice treated with either vehicle or human neural stem cells (hNSC)",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,5XFAD,adult,age rule: age with unit,adult,41 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2345,32285,counts,pixel,4.756699469020538,platform_constant,True,H&E,4.756699469020538,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38155736,,GSM6380092,,,train,hesrt,samples/GSE209583/GSM6380092,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6380093,GSE209583,GSE209583,"Spatial transcriptomics analysis of wild type, 5XFAD mice, 5XFAD mice treated with either vehicle or human neural stem cells (hNSC)",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,5XFAD,adult,age rule: age with unit,adult,41 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2287,32285,counts,pixel,4.7483768406641,platform_constant,True,H&E,4.7483768406641,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38155736,,GSM6380093,,,train,hesrt,samples/GSE209583/GSM6380093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM6415705,GSE210041+GSE210042,GSE210041,Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear-cell renal cell carcinoma [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,tumour tissue,MONDO:0005005,clear cell renal carcinoma,disease,luna,clear-cell renal cell carcinoma,Tumour,not stated,luna,not stated,,unknown,,GSE210041:Patient 1,Patient 1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3199,17943,counts,pixel,4.660426103030553,platform_constant,True,H&E,4.660426103030553,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37335139,,GSM6415705,,,train,hesrt,samples/GSE210041/GSM6415705,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6415706,GSE210041+GSE210042,GSE210041,Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear-cell renal cell carcinoma [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,tumour tissue,MONDO:0005005,clear cell renal carcinoma,disease,luna,clear-cell renal cell carcinoma,Tumour,not stated,luna,not stated,,unknown,,GSE210041:Patient 7,Patient 7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3880,17943,counts,pixel,4.659073910080188,platform_constant,True,H&E,4.659073910080188,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37335139,,GSM6415706,,,train,hesrt,samples/GSE210041/GSM6415706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6415706,GSE210041+GSE210042,GSE210041,Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear-cell renal cell carcinoma [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,tumour tissue,MONDO:0005005,clear cell renal carcinoma,disease,luna,clear-cell renal cell carcinoma,Tumour,not stated,luna,not stated,,unknown,,GSE210041:Patient 7,Patient 7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3880,17943,counts,pixel,4.6590739100801875,platform_constant,True,H&E,4.6590739100801875,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37335139,,GSM6415706,,,train,hesrt,samples/GSE210041/GSM6415706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6429503,GSE210380,GSE210380,Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0001817,lacrimal gland,Lacrimal Gland,primary tissue,,,normal,luna,,control,adult,age rule: age with unit,adult,4 months,male,male,GSE210380:BALB/cJ,BALB/cJ,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1135,32285,counts,pixel,0.7518796992481203,platform_constant,True,H&E,0.7518796992481203,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36341342,,GSM6429503,,,train,hesrt,samples/GSE210380/GSM6429503,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6429504,GSE210380,GSE210380,Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0001817,lacrimal gland,Lacrimal Gland,primary tissue,,,normal,luna,,control,adult,age rule: age with unit,adult,4 months,male,male,GSE210380:BALB/cJ,BALB/cJ,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1106,32285,counts,pixel,0.7541855601681494,platform_constant,True,H&E,0.7541855601681494,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36341342,,GSM6429504,,,train,hesrt,samples/GSE210380/GSM6429504,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6429505,GSE210380,GSE210380,Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,uberon_chain,UBERON:0001817,lacrimal gland,Lacrimal Gland,primary tissue,,,disease,luna,,disease,adult,age rule: age with unit,adult,4 months,male,male,GSE210380:NOD.B10Sn-H2b/J,NOD.B10Sn-H2b/J,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1530,32285,counts,pixel,0.7541855601681494,platform_constant,True,H&E,0.7541855601681494,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36341342,,GSM6429505,,,train,hesrt,samples/GSE210380/GSM6429505,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6429506,GSE210380,GSE210380,Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,uberon_chain,UBERON:0001817,lacrimal gland,Lacrimal Gland,primary tissue,,,disease,luna,,disease,adult,age rule: age with unit,adult,4 months,male,male,GSE210380:NOD.B10Sn-H2b/J,NOD.B10Sn-H2b/J,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1505,32285,counts,pixel,0.7541855601681494,platform_constant,True,H&E,0.7541855601681494,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36341342,,GSM6429506,,,train,hesrt,samples/GSE210380/GSM6429506,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6433585,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1289,36601,counts,pixel,0.4405286343612334,platform_constant,True,H&E,0.4999863371712869,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433585,,,train,hesrt,samples/GSE210616/GSM6433585,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433586,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1376,36601,counts,pixel,0.4405286343612334,platform_constant,True,H&E,0.4999863371712869,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433586,,,train,hesrt,samples/GSE210616/GSM6433586,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433587,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1654,36601,counts,pixel,0.4405115370766519,platform_constant,True,H&E,0.5000022365065548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433587,,,train,hesrt,samples/GSE210616/GSM6433587,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM6433588,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1178,36601,counts,pixel,0.4405115370766519,platform_constant,True,H&E,0.5000022365065548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433588,,,train,hesrt,samples/GSE210616/GSM6433588,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433589,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2117,36601,counts,pixel,0.4405115370766519,platform_constant,True,H&E,0.5000022365065548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433589,,,train,hesrt,samples/GSE210616/GSM6433589,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433590,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1532,36601,counts,pixel,0.4405286343612334,platform_constant,True,H&E,0.5000080575573295,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433590,,,train,hesrt,samples/GSE210616/GSM6433590,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433585,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1289,36601,counts,pixel,0.44052863436123346,platform_constant,True,H&E,0.49998633717128693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433585,,,train,hesrt,samples/GSE210616/GSM6433585,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433586,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1376,36601,counts,pixel,0.44052863436123346,platform_constant,True,H&E,0.49998633717128693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433586,,,train,hesrt,samples/GSE210616/GSM6433586,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433587,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1654,36601,counts,pixel,0.44051153707665197,platform_constant,True,H&E,0.5000022365065548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433587,,,train,hesrt,samples/GSE210616/GSM6433587,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM6433588,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1178,36601,counts,pixel,0.44051153707665197,platform_constant,True,H&E,0.5000022365065548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433588,,,train,hesrt,samples/GSE210616/GSM6433588,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433589,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2117,36601,counts,pixel,0.44051153707665197,platform_constant,True,H&E,0.5000022365065548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433589,,,train,hesrt,samples/GSE210616/GSM6433589,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433590,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1532,36601,counts,pixel,0.44052863436123346,platform_constant,True,H&E,0.5000080575573295,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433590,,,train,hesrt,samples/GSE210616/GSM6433590,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433591,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,772,36601,counts,pixel,0.4065040650406504,platform_constant,True,H&E,0.4999878313627299,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433591,,,train,hesrt,samples/GSE210616/GSM6433591,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433592,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1325,36601,counts,pixel,0.4065040650406504,platform_constant,True,H&E,0.5000023869880508,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433592,,,train,hesrt,samples/GSE210616/GSM6433592,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433593,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1542,36601,counts,pixel,0.4065040650406504,platform_constant,True,H&E,0.5000078775231349,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433593,,,train,hesrt,samples/GSE210616/GSM6433593,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433594,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1391,36601,counts,pixel,0.4065040650406504,platform_constant,True,H&E,0.5000062032548955,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433594,,,train,hesrt,samples/GSE210616/GSM6433594,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433595,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1264,36601,counts,pixel,0.4065007064327852,platform_constant,True,H&E,0.5000042110552312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433595,,,train,hesrt,samples/GSE210616/GSM6433595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433596,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1167,36601,counts,pixel,0.4065007064327852,platform_constant,True,H&E,0.4999930069031277,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433596,,,train,hesrt,samples/GSE210616/GSM6433596,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433597,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1109,36601,counts,pixel,0.3236178168551317,platform_constant,True,H&E,0.499997592870109,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433597,,,train,hesrt,samples/GSE210616/GSM6433597,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433598,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1058,36601,counts,pixel,0.3246736134215414,platform_constant,True,H&E,0.4999890183037901,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433598,,,train,hesrt,samples/GSE210616/GSM6433598,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433599,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1949,36601,counts,pixel,0.3257311709922281,platform_constant,True,H&E,0.4999842763987928,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433599,,,train,hesrt,samples/GSE210616/GSM6433599,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433600,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,754,36601,counts,pixel,0.3236178168551317,platform_constant,True,H&E,0.4999947298999704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433600,,,train,hesrt,samples/GSE210616/GSM6433600,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433595,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1264,36601,counts,pixel,0.40650070643278524,platform_constant,True,H&E,0.5000042110552312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433595,,,train,hesrt,samples/GSE210616/GSM6433595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433596,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1167,36601,counts,pixel,0.40650070643278524,platform_constant,True,H&E,0.49999300690312776,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433596,,,train,hesrt,samples/GSE210616/GSM6433596,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433597,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1109,36601,counts,pixel,0.32361781685513175,platform_constant,True,H&E,0.49999759287010903,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433597,,,train,hesrt,samples/GSE210616/GSM6433597,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433598,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1058,36601,counts,pixel,0.3246736134215414,platform_constant,True,H&E,0.49998901830379017,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433598,,,train,hesrt,samples/GSE210616/GSM6433598,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433599,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1949,36601,counts,pixel,0.32573117099222815,platform_constant,True,H&E,0.49998427639879284,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433599,,,train,hesrt,samples/GSE210616/GSM6433599,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433600,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,754,36601,counts,pixel,0.32361781685513175,platform_constant,True,H&E,0.4999947298999704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433600,,,train,hesrt,samples/GSE210616/GSM6433600,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433601,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1593,36601,counts,pixel,0.3225806451612903,platform_constant,True,H&E,0.5000041795885612,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433601,,,train,hesrt,samples/GSE210616/GSM6433601,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433602,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1554,36601,counts,pixel,0.3236229007757908,platform_constant,True,H&E,0.5000040745043717,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433602,,,train,hesrt,samples/GSE210616/GSM6433602,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433603,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1127,36601,counts,pixel,0.3225789668151527,platform_constant,True,H&E,0.4999942954502293,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433603,,,train,hesrt,samples/GSE210616/GSM6433603,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433604,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1111,36601,counts,pixel,0.3225789668151527,platform_constant,True,H&E,0.5000150280961682,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433604,,,train,hesrt,samples/GSE210616/GSM6433604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433603,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1127,36601,counts,pixel,0.32257896681515275,platform_constant,True,H&E,0.49999429545022933,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433603,,,train,hesrt,samples/GSE210616/GSM6433603,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433604,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1111,36601,counts,pixel,0.32257896681515275,platform_constant,True,H&E,0.5000150280961682,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433604,,,train,hesrt,samples/GSE210616/GSM6433604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433605,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,558,36601,counts,pixel,0.3236229007757908,platform_constant,True,H&E,0.5000131850289173,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433605,,,train,hesrt,samples/GSE210616/GSM6433605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6433606,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,850,36601,counts,pixel,0.3278670902111847,platform_constant,True,H&E,0.4999967851492875,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433606,,,train,hesrt,samples/GSE210616/GSM6433606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433607,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2088,36601,counts,pixel,0.3236178168551317,platform_constant,True,H&E,0.4999922437088907,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433607,,,train,hesrt,samples/GSE210616/GSM6433607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433607,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2088,36601,counts,pixel,0.32361781685513175,platform_constant,True,H&E,0.4999922437088907,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433607,,,train,hesrt,samples/GSE210616/GSM6433607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433608,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3116,36601,counts,pixel,0.3236229007757908,platform_constant,True,H&E,0.4999886016326645,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433608,,,train,hesrt,samples/GSE210616/GSM6433608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433609,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1518,36601,counts,pixel,0.3236178168551317,platform_constant,True,H&E,0.5000022285511696,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433609,,,train,hesrt,samples/GSE210616/GSM6433609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM6433609,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1518,36601,counts,pixel,0.32361781685513175,platform_constant,True,H&E,0.5000022285511696,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433609,,,train,hesrt,samples/GSE210616/GSM6433609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6433610,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1511,36601,counts,pixel,0.3236229007757908,platform_constant,True,H&E,0.5000021819866903,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433610,,,train,hesrt,samples/GSE210616/GSM6433610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433611,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1359,36601,counts,pixel,0.3246684798225369,platform_constant,True,H&E,0.5000002728909335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433611,,,train,hesrt,samples/GSE210616/GSM6433611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433612,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,844,36601,counts,pixel,0.3225789668151527,platform_constant,True,H&E,0.4999890459232274,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433612,,,train,hesrt,samples/GSE210616/GSM6433612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433612,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,844,36601,counts,pixel,0.32257896681515275,platform_constant,True,H&E,0.4999890459232274,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433612,,,train,hesrt,samples/GSE210616/GSM6433612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433613,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1868,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5000113193024291,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433613,,,train,hesrt,samples/GSE210616/GSM6433613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433614,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1199,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5000078031825909,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433614,,,train,hesrt,samples/GSE210616/GSM6433614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433615,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1048,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5000134628687788,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433615,,,train,hesrt,samples/GSE210616/GSM6433615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433616,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,921,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433616,,,train,hesrt,samples/GSE210616/GSM6433616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433617,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,554,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5000053653999581,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433617,,,train,hesrt,samples/GSE210616/GSM6433617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433618,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2207,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.4999890369861843,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433618,,,train,hesrt,samples/GSE210616/GSM6433618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6433618,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2207,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.49998903698618435,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433618,,,train,hesrt,samples/GSE210616/GSM6433618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433619,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2196,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.500014239316795,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433619,,,train,hesrt,samples/GSE210616/GSM6433619,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433620,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,926,36601,counts,pixel,0.4328963766201112,platform_constant,True,H&E,0.5000144166705731,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433620,,,train,hesrt,samples/GSE210616/GSM6433620,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433621,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,821,36601,counts,pixel,0.4328963766201112,platform_constant,True,H&E,0.4999908808805768,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433621,,,train,hesrt,samples/GSE210616/GSM6433621,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433622,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1298,36601,counts,pixel,0.4328963766201112,platform_constant,True,H&E,0.4999916354150918,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433622,,,train,hesrt,samples/GSE210616/GSM6433622,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6433623,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,901,36601,counts,pixel,0.4328963766201112,platform_constant,True,H&E,0.499985922967417,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433623,,,train,hesrt,samples/GSE210616/GSM6433623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM6433623,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,901,36601,counts,pixel,0.4328963766201112,platform_constant,True,H&E,0.49998592296741706,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433623,,,train,hesrt,samples/GSE210616/GSM6433623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6433624,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1266,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5000136684280129,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433624,,,train,hesrt,samples/GSE210616/GSM6433624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM6433625,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,635,36601,counts,pixel,0.4328963766201112,platform_constant,True,H&E,0.5000107334980887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433625,,,train,hesrt,samples/GSE210616/GSM6433625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6433626,GSE210616,GSE210616,Spatial transcriptomics of triple negative breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,TNBC tumor tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,897,36601,counts,pixel,0.4329004329004329,platform_constant,True,H&E,0.5000101643385312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36283023,,GSM6433626,,,train,hesrt,samples/GSE210616/GSM6433626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1610,7 +1610,7 @@ GSM6436178,GSE210738,GSE210738,Spatial transcriptomics revealing host-microbe in mouse gut metagenome",,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,,,normal,luna,,,adult,age rule: age with unit,juvenile,6 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,535,31053,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM6436178,,,test,sda-all,samples/GSE210738/GSM6436178,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM6436179,GSE210738,GSE210738,Spatial transcriptomics revealing host-microbe interactions,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism is a metagenome label; host species given,"Mus musculus mouse gut metagenome",,colon,luna,UBERON:0000059,large intestine,large intestine,primary tissue,,,normal,luna,,,adult,age rule: age with unit,juvenile,6 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,641,31053,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM6436179,,,test,sda-all,samples/GSE210738/GSM6436179,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM6436954,GSE210773,GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,Oryctolagus cuniculus,9986,rabbit,Oryctolagus cuniculus,9986,,False,False,GEO organism field,Oryctolagus cuniculus,Oryctolagus cuniculus,skeletal muscle,luna,UBERON:0002383,supraspinatus muscle,M. supraspinatus,primary tissue,,,perturbation,luna,,"Harvested and snapfrozen at 2w after tenotomy; muscle, 2 weeks tenotomy, stored 6 years",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,854,21139,counts,pixel,0.4995865872887957,platform_constant,True,H&E,0.4995865872887957,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36195913,10.1186/s13018-022-03326-8,GSM6436954,,,train,hesrt,samples/GSE210773/GSM6436954,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM6436954,GSE210773,GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,Oryctolagus cuniculus,9986,rabbit,Oryctolagus cuniculus,9986,,False,False,GEO organism field,Oryctolagus cuniculus,Oryctolagus cuniculus,skeletal muscle,luna,UBERON:0002383,supraspinatus muscle,M. supraspinatus,primary tissue,,,perturbation,luna,,"Harvested and snapfrozen at 2w after tenotomy; muscle, 2 weeks tenotomy, stored 6 years",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,854,21139,counts,pixel,0.49958658728879574,platform_constant,True,H&E,0.49958658728879574,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36195913,10.1186/s13018-022-03326-8,GSM6436954,,,train,hesrt,samples/GSE210773/GSM6436954,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM6436955,GSE210773,GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,Oryctolagus cuniculus,9986,rabbit,Oryctolagus cuniculus,9986,,False,False,GEO organism field,Oryctolagus cuniculus,Oryctolagus cuniculus,skeletal muscle,luna,UBERON:0002383,supraspinatus muscle,M. supraspinatus,primary tissue,,,disease,luna,,"Harvested and snapfrozen at 16w after tenotomy; muscle, 16 weeks tenotomy, stored 6 years",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1726,21139,counts,pixel,0.5000970529380039,platform_constant,True,H&E,0.5000970529380039,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36195913,10.1186/s13018-022-03326-8,GSM6436955,,,train,hesrt,samples/GSE210773/GSM6436955,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 0.59}",disease_status;life_stage,low_confidence_annotation GSM6436956,GSE210773,GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,Oryctolagus cuniculus,9986,rabbit,Oryctolagus cuniculus,9986,,False,False,GEO organism field,Oryctolagus cuniculus,Oryctolagus cuniculus,skeletal muscle,luna,UBERON:0002383,supraspinatus muscle,M. supraspinatus,primary tissue,,,normal,luna,,"Harvested and snapfrozen; muscle, healthy, stored 6 years",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2440,21139,counts,pixel,0.4988068339141743,platform_constant,True,H&E,0.4999848736710878,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36195913,10.1186/s13018-022-03326-8,GSM6436956,,,train,hesrt,samples/GSE210773/GSM6436956,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6436957,GSE210773,GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,Oryctolagus cuniculus,9986,rabbit,Oryctolagus cuniculus,9986,,False,False,GEO organism field,Oryctolagus cuniculus,Oryctolagus cuniculus,skeletal muscle,luna,UBERON:0002383,supraspinatus muscle,M. supraspinatus,primary tissue,,,normal,luna,,"Harvested and snapfrozen; muscle, healthy, fresh",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1950,21139,counts,pixel,0.4995049361864149,platform_constant,True,H&E,0.4995049361864149,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36195913,10.1186/s13018-022-03326-8,GSM6436957,,,train,hesrt,samples/GSE210773/GSM6436957,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, @@ -1624,7 +1624,7 @@ GSM6505120,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Disco GSM6505121,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1416,25399,counts,pixel,4.428359217230713,platform_constant,True,H&E,4.428359217230713,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505121,,,val,hesrt,samples/GSE211895/GSM6505121,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6505122,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1393,25399,counts,pixel,4.5372638662565965,platform_constant,True,H&E,4.5372638662565965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505122,,,val,hesrt,samples/GSE211895/GSM6505122,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6505123,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1138,25399,counts,pixel,4.317708326371092,platform_constant,True,H&E,4.317708326371092,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505123,,,val,hesrt,samples/GSE211895/GSM6505123,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6505124,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1150,25399,counts,pixel,4.544406796778596,platform_constant,True,H&E,4.544406796778596,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505124,,,val,hesrt,samples/GSE211895/GSM6505124,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6505124,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1150,25399,counts,pixel,4.5444067967785955,platform_constant,True,H&E,4.5444067967785955,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505124,,,val,hesrt,samples/GSE211895/GSM6505124,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6505125,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1302,25399,counts,pixel,4.319283506064885,platform_constant,True,H&E,4.319283506064885,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505125,,,val,hesrt,samples/GSE211895/GSM6505125,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6505126,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1286,25399,counts,pixel,4.538143240260036,platform_constant,True,H&E,4.538143240260036,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505126,,,val,hesrt,samples/GSE211895/GSM6505126,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6505127,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1372,25399,counts,pixel,4.535505953053912,platform_constant,True,H&E,4.535505953053912,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505127,,,val,hesrt,samples/GSE211895/GSM6505127,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -1635,14 +1635,14 @@ GSM6505131,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Disco GSM6505132,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1388,25399,counts,pixel,4.339333210031179,platform_constant,True,H&E,4.339333210031179,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505132,,,val,hesrt,samples/GSE211895/GSM6505132,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6505133,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2204,18035,counts,pixel,4.263711262769721,platform_constant,True,H&E,4.263711262769721,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,SS-GSM6505133,same_section_cross_series,GSM8641043,val,hesrt,samples/GSE211895/GSM6505133,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM6505134,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3232,18035,counts,pixel,4.54475740500232,platform_constant,True,H&E,4.54475740500232,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,SS-GSM6505134,same_section_cross_series,GSM8641039,val,hesrt,samples/GSE211895/GSM6505134,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6505135,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2261,18035,counts,pixel,4.535758767980743,platform_constant,True,H&E,4.535758767980743,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,SS-GSM6505135,same_section_cross_series,GSM8641038,val,hesrt,samples/GSE211895/GSM6505135,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6505135,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic cancer,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2261,18035,counts,pixel,4.5357587679807425,platform_constant,True,H&E,4.5357587679807425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,SS-GSM6505135,same_section_cross_series,GSM8641038,val,hesrt,samples/GSE211895/GSM6505135,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6505136,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,B16F10 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1469,32285,counts,pixel,4.428835238002819,platform_constant,True,H&E,4.428835238002819,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505136,,,val,hesrt,samples/GSE211895/GSM6505136,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6505137,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,B16F10 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2421,32285,counts,pixel,4.54839563732969,platform_constant,True,H&E,4.54839563732969,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505137,,,val,hesrt,samples/GSE211895/GSM6505137,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6505138,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,B16F10 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2188,32285,counts,pixel,4.4278615772984775,platform_constant,True,H&E,4.4278615772984775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505138,,,val,hesrt,samples/GSE211895/GSM6505138,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.98}",, GSM6505139,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,B16F10 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2897,32285,counts,pixel,4.427435019361736,platform_constant,True,H&E,4.427435019361736,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505139,,,val,hesrt,samples/GSE211895/GSM6505139,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6505140,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,B16F10 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3090,32285,counts,pixel,4.428643928596248,platform_constant,True,H&E,4.428643928596248,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505140,,,val,hesrt,samples/GSE211895/GSM6505140,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.8, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6505141,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,B16F10 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3444,32285,counts,pixel,4.427576966513371,platform_constant,True,H&E,4.427576966513371,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505141,,,val,hesrt,samples/GSE211895/GSM6505141,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM6505142,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1378,32285,counts,pixel,4.535978484243088,platform_constant,True,H&E,4.535978484243088,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505142,,,val,hesrt,samples/GSE211895/GSM6505142,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, +GSM6505142,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1378,32285,counts,pixel,4.5359784842430875,platform_constant,True,H&E,4.5359784842430875,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505142,,,val,hesrt,samples/GSE211895/GSM6505142,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM6505143,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1372,32285,counts,pixel,4.4278089244802725,platform_constant,True,H&E,4.4278089244802725,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505143,,,val,hesrt,samples/GSE211895/GSM6505143,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6505144,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1982,32285,counts,pixel,4.426813059493336,platform_constant,True,H&E,4.426813059493336,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505144,,,val,hesrt,samples/GSE211895/GSM6505144,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM6505145,GSE211895,GSE211895,Assessment of Spatial Genomics for Oncology Discovery,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 syngeneic tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1909,32285,counts,pixel,4.426914931840297,platform_constant,True,H&E,4.426914931840297,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36452860,,GSM6505145,,,val,hesrt,samples/GSE211895/GSM6505145,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.88, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -1655,11 +1655,11 @@ GSM6506114,GSE211956,GSE211956,Spatial transcriptomics reveals ovarian cancer su GSM6506115,GSE211956,GSE211956,Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovarian tumour,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1801,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.119973387730536,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38570491,,GSM6506115,,,train,sda-all,samples/GSE211956/GSM6506115,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.77, ""life_stage"": 1.0}",, GSM6506116,GSE211956,GSE211956,Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovarian tumour,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3632,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.088968779662904,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38570491,,GSM6506116,,,train,sda-all,samples/GSE211956/GSM6506116,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM6506117,GSE211956,GSE211956,Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovarian tumour,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3180,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.110960674579076,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38570491,,GSM6506117,,,train,sda-all,samples/GSE211956/GSM6506117,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6523976,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE3 Middle_age,adult,luna,adult,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2773,68886,counts,pixel,3.855523574559208,platform_constant,True,H&E,3.855523574559208,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523976,,,train,hesrt,samples/GSE212323/GSM6523976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 0.42}",disease_status;life_stage,low_confidence_annotation -GSM6523977,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE4 Middle_age,adult,luna,adult,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2660,68886,counts,pixel,3.858696761362244,platform_constant,True,H&E,3.858696761362244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523977,,,train,hesrt,samples/GSE212323/GSM6523977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.12, ""uberon"": 0.98, ""life_stage"": 0.73}",disease_status,low_confidence_annotation +GSM6523976,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE3 Middle_age,adult,luna,adult,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2773,68886,counts,pixel,3.8555235745592076,platform_constant,True,H&E,3.8555235745592076,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523976,,,train,hesrt,samples/GSE212323/GSM6523976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 0.42}",disease_status;life_stage,low_confidence_annotation +GSM6523977,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE4 Middle_age,adult,luna,adult,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2660,68886,counts,pixel,3.8586967613622436,platform_constant,True,H&E,3.8586967613622436,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523977,,,train,hesrt,samples/GSE212323/GSM6523977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.12, ""uberon"": 0.98, ""life_stage"": 0.73}",disease_status,low_confidence_annotation GSM6523978,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE3 Young_age,juvenile,luna,juvenile,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2670,68886,counts,pixel,3.9008621243577593,platform_constant,True,H&E,3.9008621243577593,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523978,,,train,hesrt,samples/GSE212323/GSM6523978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.6000000000000001, ""uberon"": 0.98, ""life_stage"": 0.38}",life_stage,low_confidence_annotation -GSM6523979,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,ApoE4 Young_age,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2367,68886,counts,pixel,3.879525988279656,platform_constant,True,H&E,3.879525988279656,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523979,,,train,hesrt,samples/GSE212323/GSM6523979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.79, ""disease_status"": 0.45, ""uberon"": 0.98, ""life_stage"": 0.72}",disease_status,low_confidence_annotation -GSM6523980,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE3 Old_aged,aged,luna,aged,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2366,68886,counts,pixel,3.856249989173577,platform_constant,True,H&E,3.856249989173577,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523980,,,train,hesrt,samples/GSE212323/GSM6523980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6523979,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,ApoE4 Young_age,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2367,68886,counts,pixel,3.8795259882796556,platform_constant,True,H&E,3.8795259882796556,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523979,,,train,hesrt,samples/GSE212323/GSM6523979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.79, ""disease_status"": 0.45, ""uberon"": 0.98, ""life_stage"": 0.72}",disease_status,low_confidence_annotation +GSM6523980,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE3 Old_aged,aged,luna,aged,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2366,68886,counts,pixel,3.8562499891735773,platform_constant,True,H&E,3.8562499891735773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523980,,,train,hesrt,samples/GSE212323/GSM6523980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6523981,GSE212323+GSE213391,GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,ApoE4 Old_aged,aged,luna,aged,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1688,68886,counts,pixel,3.8467674233121714,platform_constant,True,H&E,3.8467674233121714,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36871219,,GSM6523981,,,train,hesrt,samples/GSE212323/GSM6523981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.28, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6534007,GSE212526,GSE212526,Spatial transcriptomics analysis of soft tissue sarcomas.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Undifferentiated pleomorphic sarcoma,tumour tissue,MONDO:0002142,undifferentiated pleomorphic sarcoma,disease,luna,Undifferentiated pleomorphic sarcoma,Tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1648,36601,counts,pixel,0.7633587786259542,platform_constant,True,H&E,0.7633587786259542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38429415,10.1038/s43018-024-00743-y,GSM6534007,,,train,hesrt,samples/GSE212526/GSM6534007,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM6534008,GSE212526,GSE212526,Spatial transcriptomics analysis of soft tissue sarcomas.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Leiomyosarcoma,tumour tissue,MONDO:0005058,leiomyosarcoma,disease,luna,Leiomyosarcoma,Tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2103,36601,counts,pixel,0.7633587786259542,platform_constant,True,H&E,0.7633587786259542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38429415,10.1038/s43018-024-00743-y,GSM6534008,,,train,hesrt,samples/GSE212526/GSM6534008,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -1672,31 +1672,31 @@ GSM6543816,GSE212706,GSE212706,Multiomic analysis reveals conservation of cancer GSM6543817,GSE212706,GSE212706,Multiomic analysis reveals conservation of cancer associated fibroblast phenotypes across species and tissue of origin [spatial trascriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0021100;MONDO:0004992,breast neoplasm;cancer,disease,luna,breast tumor,late stage breast tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1640,32285,counts,pixel,4.806348247466123,platform_constant,True,H&E,4.806348247466123,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1016/j.ccell.2022.09.015,GSM6543817,,,train,hesrt,samples/GSE212706/GSM6543817,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM6543818,GSE212706,GSE212706,Multiomic analysis reveals conservation of cancer associated fibroblast phenotypes across species and tissue of origin [spatial trascriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,normal breast tissue,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,480,32285,counts,pixel,4.369338468746215,platform_constant,True,H&E,4.369338468746215,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1016/j.ccell.2022.09.015,GSM6543818,,,train,hesrt,samples/GSE212706/GSM6543818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6560897,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,6 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2573,32285,counts,pixel,1.1111111111111112,platform_constant,True,H&E,1.1111111111111112,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560897,,,train,hesrt,samples/GSE212903/GSM6560897,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM6560898,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2735,32285,counts,pixel,1.1166390612088837,platform_constant,True,H&E,1.1166390612088837,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560898,,,train,hesrt,samples/GSE212903/GSM6560898,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6560898,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2735,32285,counts,pixel,1.1166390612088835,platform_constant,True,H&E,1.1166390612088835,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560898,,,train,hesrt,samples/GSE212903/GSM6560898,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6560899,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,21 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2973,32285,counts,pixel,1.1111111111111112,platform_constant,True,H&E,1.1111111111111112,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560899,,,train,hesrt,samples/GSE212903/GSM6560899,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6560900,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,6 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2804,32285,counts,pixel,1.1166390612088837,platform_constant,True,H&E,1.1166390612088837,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560900,,,train,hesrt,samples/GSE212903/GSM6560900,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6560900,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,6 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2804,32285,counts,pixel,1.1166390612088835,platform_constant,True,H&E,1.1166390612088835,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560900,,,train,hesrt,samples/GSE212903/GSM6560900,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6560901,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2801,32285,counts,pixel,1.1111111111111112,platform_constant,True,H&E,1.1111111111111112,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560901,,,train,hesrt,samples/GSE212903/GSM6560901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6560902,GSE212903,GSE212903,Spatial transcriptomics of the mouse brain across three age groups,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,21 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2857,32285,counts,pixel,1.1111111111111112,platform_constant,True,H&E,1.1111111111111112,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37591239,,GSM6560902,,,train,hesrt,samples/GSE212903/GSM6560902,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6690475,GSE213216,GSE213216,A single-cell transcriptomic analysis of endometriosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Endometriosis,primary tissue,MONDO:0005133,endometriosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1388,36601,counts,um,1.0,verified,True,H&E,4.015091800917568,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36624343;38370978,,GSM6690475,,,train,sda-all,samples/GSE213216/GSM6690475,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM6690476,GSE213216,GSE213216,A single-cell transcriptomic analysis of endometriosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Endometriosis,primary tissue,MONDO:0005133,endometriosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1960,36601,counts,um,1.0,verified,True,H&E,4.086742145180486,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36624343;38370978,,GSM6690476,,,train,sda-all,samples/GSE213216/GSM6690476,sda-tissue-disease-2.3,"{""organ"": 0.43, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation -GSM6578058,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1303,19923,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578058,,,train,sda-all,samples/GSE213264/GSM6578058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6578059,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2037,19468,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578059,,,train,sda-all,samples/GSE213264/GSM6578059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM6578060,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,902,20444,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578060,,,train,sda-all,samples/GSE213264/GSM6578060,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM6578061,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2419,23750,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578061,,,train,sda-all,samples/GSE213264/GSM6578061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6578062,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,tonsil,luna,UBERON:0002372,tonsil,tonsil,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2492,28417,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578062,,,train,sda-all,samples/GSE213264/GSM6578062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM6578063,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2494,20236,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578063,,,train,sda-all,samples/GSE213264/GSM6578063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6578064,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,28278,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578064,,,train,sda-all,samples/GSE213264/GSM6578064,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM6578065,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1691,15486,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578065,,,train,sda-all,samples/GSE213264/GSM6578065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM6578066,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,mondo_predicate,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1710,23899,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578066,,,train,sda-all,samples/GSE213264/GSM6578066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 0.24, ""uberon"": 0.98, ""life_stage"": 0.98}",disease_status,low_confidence_annotation -GSM6578067,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1303,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578067,,,train,sda-all,samples/GSE213264/GSM6578067,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6578068,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2037,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578068,,,train,sda-all,samples/GSE213264/GSM6578068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6578069,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,902,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578069,,,train,sda-all,samples/GSE213264/GSM6578069,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.79, ""life_stage"": 1.0}",, -GSM6578070,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2419,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578070,,,train,sda-all,samples/GSE213264/GSM6578070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6578071,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,tonsil,luna,UBERON:0002372,tonsil,tonsil,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2492,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578071,,,train,sda-all,samples/GSE213264/GSM6578071,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, -GSM6578072,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2494,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578072,,,train,sda-all,samples/GSE213264/GSM6578072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6578073,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578073,,,train,sda-all,samples/GSE213264/GSM6578073,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6578074,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1691,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578074,,,train,sda-all,samples/GSE213264/GSM6578074,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM6578075,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1710,230,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578075,,,train,sda-all,samples/GSE213264/GSM6578075,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.33, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM6578058,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1303,19923,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578058,,,train,sda-all,samples/GSE213264/GSM6578058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6578059,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2037,19468,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578059,,,train,sda-all,samples/GSE213264/GSM6578059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM6578060,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,902,20444,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578060,,,train,sda-all,samples/GSE213264/GSM6578060,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM6578061,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2419,23750,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578061,,,train,sda-all,samples/GSE213264/GSM6578061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6578062,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,tonsil,luna,UBERON:0002372,tonsil,tonsil,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2492,28417,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578062,,,train,sda-all,samples/GSE213264/GSM6578062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM6578063,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2494,20236,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578063,,,train,sda-all,samples/GSE213264/GSM6578063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6578064,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,28278,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578064,,,train,sda-all,samples/GSE213264/GSM6578064,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM6578065,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1691,15486,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578065,,,train,sda-all,samples/GSE213264/GSM6578065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM6578066,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,mondo_predicate,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1710,23899,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578066,,,train,sda-all,samples/GSE213264/GSM6578066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 0.24, ""uberon"": 0.98, ""life_stage"": 0.98}",disease_status,low_confidence_annotation +GSM6578067,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1303,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578067,,,train,sda-all,samples/GSE213264/GSM6578067,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6578068,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2037,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578068,,,train,sda-all,samples/GSE213264/GSM6578068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6578069,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,902,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578069,,,train,sda-all,samples/GSE213264/GSM6578069,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.79, ""life_stage"": 1.0}",, +GSM6578070,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2419,199,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578070,,,train,sda-all,samples/GSE213264/GSM6578070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6578071,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,tonsil,luna,UBERON:0002372,tonsil,tonsil,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2492,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578071,,,train,sda-all,samples/GSE213264/GSM6578071,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, +GSM6578072,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2494,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578072,,,train,sda-all,samples/GSE213264/GSM6578072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6578073,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578073,,,train,sda-all,samples/GSE213264/GSM6578073,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6578074,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1691,283,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578074,,,train,sda-all,samples/GSE213264/GSM6578074,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM6578075,GSE213264,GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1710,230,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,36823353;39095360,,GSM6578075,,,train,sda-all,samples/GSE213264/GSM6578075,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.33, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9349972,GSE213286,GSE213286,Craters on the melanoma surface serve as hubs for CD8+ T cells,Danio rerio,7955,zebrafish,Danio rerio,7955,,False,False,GEO organism field,Danio rerio,,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,Untreated,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,26210,22366,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41109214,,GSM9349972,,,train,sda-all,samples/GSE213286/GSM9349972,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 0.97}",, GSM6578640,GSE213306,GSE213306,Spatial transcriptomic analysis of human oligodendrocyte development across gestational weeks 10 to 24,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000956,cerebral cortex,Brain (cortex),primary tissue,,,normal,luna,,"healthy, no known abnormality",fetal,age rule: post-conception / gestational weeks,fetal,Gestational week 10,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1264,36601,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,41509247,,GSM6578640,,,train,sda-all,samples/GSE213306/GSM6578640,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM6578641,GSE213306,GSE213306,Spatial transcriptomic analysis of human oligodendrocyte development across gestational weeks 10 to 24,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000956,cerebral cortex,Brain (cortex),primary tissue,,,normal,luna,,"healthy, no known abnormality",fetal,age rule: post-conception / gestational weeks,fetal,Gestational week 13,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1113,36601,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,41509247,,GSM6578641,,,train,sda-all,samples/GSE213306/GSM6578641,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -1711,15 +1711,15 @@ GSM6585446,GSE213388,GSE213388,Periportal macrophages protect against commensal- GSM6585447,GSE213388,GSE213388,Periportal macrophages protect against commensal-driven liver inflammation [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Wild type,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2484,31053,counts,pixel,4.358304559939988,platform_constant,True,H&E,4.358304559939988,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38658756,,GSM6585447,,,val,hesrt,samples/GSE213388/GSM6585447,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6585448,GSE213388,GSE213388,Periportal macrophages protect against commensal-driven liver inflammation [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Wild type,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1719,31053,counts,pixel,4.35880313821056,platform_constant,True,H&E,4.35880313821056,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38658756,,GSM6585448,,,val,hesrt,samples/GSE213388/GSM6585448,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6591749,GSE213666,GSE213666,Multi-omics profiling visualizes dynamics of cardiac development and functions,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,wild type,embryonic,age rule: embryonic day,embryonic,10.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,332,32285,counts,pixel,0.5780250255571965,platform_constant,True,H&E,0.5780250255571965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36577384,,GSM6591749,,,train,hesrt,samples/GSE213666/GSM6591749,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6592048,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1689,36601,counts,pixel,3.972706541201255,platform_constant,True,H&E,3.972706541201255,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592048,,,train,hesrt,samples/GSE213688/GSM6592048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6592049,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1848,36601,counts,pixel,3.972706541201255,platform_constant,True,H&E,3.972706541201255,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592049,,,train,hesrt,samples/GSE213688/GSM6592049,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6592050,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Unstable,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2417,36601,counts,pixel,3.917024872795417,platform_constant,True,H&E,3.917024872795417,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592050,,,train,hesrt,samples/GSE213688/GSM6592050,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM6592048,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1689,36601,counts,pixel,3.9727065412012545,platform_constant,True,H&E,3.9727065412012545,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592048,,,train,hesrt,samples/GSE213688/GSM6592048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6592049,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1848,36601,counts,pixel,3.9727065412012545,platform_constant,True,H&E,3.9727065412012545,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592049,,,train,hesrt,samples/GSE213688/GSM6592049,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6592050,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Unstable,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2417,36601,counts,pixel,3.9170248727954173,platform_constant,True,H&E,3.9170248727954173,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592050,,,train,hesrt,samples/GSE213688/GSM6592050,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM6592051,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Unstable,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1564,36601,counts,pixel,5.141044033787043,platform_constant,True,H&E,5.141044033787043,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592051,,,train,hesrt,samples/GSE213688/GSM6592051,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6592052,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Unstable,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2104,36601,counts,pixel,4.044621436162119,platform_constant,True,H&E,4.044621436162119,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592052,,,train,hesrt,samples/GSE213688/GSM6592052,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6592053,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Unstable,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1731,36601,counts,pixel,3.963290785284132,platform_constant,True,H&E,3.963290785284132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592053,,,train,hesrt,samples/GSE213688/GSM6592053,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6592053,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Unstable,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1731,36601,counts,pixel,3.9632907852841317,platform_constant,True,H&E,3.9632907852841317,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592053,,,train,hesrt,samples/GSE213688/GSM6592053,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6592054,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1596,36601,counts,pixel,4.044621436162119,platform_constant,True,H&E,4.044621436162119,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592054,,,train,hesrt,samples/GSE213688/GSM6592054,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6592055,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1055,36601,counts,pixel,4.009719121746315,platform_constant,True,H&E,4.009719121746315,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592055,,,train,hesrt,samples/GSE213688/GSM6592055,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6592056,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1258,36601,counts,pixel,3.953712998014596,platform_constant,True,H&E,3.953712998014596,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592056,,,train,hesrt,samples/GSE213688/GSM6592056,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6592056,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1258,36601,counts,pixel,3.9537129980145957,platform_constant,True,H&E,3.9537129980145957,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592056,,,train,hesrt,samples/GSE213688/GSM6592056,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6592057,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,370,36601,counts,pixel,3.929037930962169,platform_constant,True,H&E,3.929037930962169,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592057,,,train,hesrt,samples/GSE213688/GSM6592057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.85, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6592058,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,CL-like,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1405,36601,counts,pixel,3.920758655657871,platform_constant,True,H&E,3.920758655657871,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592058,,,train,hesrt,samples/GSE213688/GSM6592058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6592059,GSE213688,GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,Metaplastic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2657,36601,counts,pixel,4.285526457211834,platform_constant,True,H&E,4.285526457211834,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37813278,10.5281/zenodo.20727406,GSM6592059,,,train,hesrt,samples/GSE213688/GSM6592059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, @@ -1749,19 +1749,19 @@ GSM6600054,GSE214138,GSE214138,Spatially resolved multi-omic profiling of human GSM6600055,GSE214138,GSE214138,Spatially resolved multi-omic profiling of human hippocampus reveals region-specific alterations in major depressive disorder [RNA-seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus (Brain),primary tissue,MONDO:0002009,major depressive disorder,disease,luna,,MDD,not stated,luna,not stated,,unknown,,GSE214138:MDD_5,MDD_5,,,DBiT-seq,release v3,DBiT-seq,sequencing-based,DBiT-seq,,,spot,2500,21783,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM6600055,,,train,sda-all,samples/GSE214138/GSM6600055,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.68, ""life_stage"": 1.0}",, GSM6604482,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3141,31053,counts,pixel,3.9864752448956544,platform_constant,True,H&E,3.9864752448956544,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604482,,,train,hesrt,samples/GSE214349/GSM6604482,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6604483,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3123,31053,counts,pixel,3.910929179274516,platform_constant,True,H&E,3.910929179274516,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604483,,,train,hesrt,samples/GSE214349/GSM6604483,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6604484,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3188,31053,counts,pixel,3.993305921610693,platform_constant,True,H&E,3.993305921610693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604484,,,train,hesrt,samples/GSE214349/GSM6604484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM6604484,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3188,31053,counts,pixel,3.9933059216106925,platform_constant,True,H&E,3.9933059216106925,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604484,,,train,hesrt,samples/GSE214349/GSM6604484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM6604485,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3049,31053,counts,pixel,3.95901653636313,platform_constant,True,H&E,3.95901653636313,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604485,,,train,hesrt,samples/GSE214349/GSM6604485,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM6604486,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3166,31053,counts,pixel,3.9959015444416015,platform_constant,True,H&E,3.9959015444416015,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604486,,,train,hesrt,samples/GSE214349/GSM6604486,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6604487,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3168,31053,counts,pixel,3.975273468284533,platform_constant,True,H&E,3.975273468284533,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604487,,,train,hesrt,samples/GSE214349/GSM6604487,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6604486,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3166,31053,counts,pixel,3.9959015444416024,platform_constant,True,H&E,3.9959015444416024,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604486,,,train,hesrt,samples/GSE214349/GSM6604486,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6604487,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 1st day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3168,31053,counts,pixel,3.9752734682845325,platform_constant,True,H&E,3.9752734682845325,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604487,,,train,hesrt,samples/GSE214349/GSM6604487,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6604488,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 3rd day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3230,31053,counts,pixel,4.027534312433566,platform_constant,True,H&E,4.027534312433566,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604488,,,train,hesrt,samples/GSE214349/GSM6604488,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6604489,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 3rd day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3107,31053,counts,pixel,3.999862804705772,platform_constant,True,H&E,3.999862804705772,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604489,,,train,hesrt,samples/GSE214349/GSM6604489,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM6604490,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 3rd day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3250,31053,counts,pixel,4.108196705700332,platform_constant,True,H&E,4.108196705700332,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604490,,,train,hesrt,samples/GSE214349/GSM6604490,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6604491,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 3rd day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2990,31053,counts,pixel,4.044657524822522,platform_constant,True,H&E,4.044657524822522,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604491,,,train,hesrt,samples/GSE214349/GSM6604491,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6604492,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 3rd day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3066,31053,counts,pixel,4.108333470905,platform_constant,True,H&E,4.108333470905,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604492,,,train,hesrt,samples/GSE214349/GSM6604492,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 0.98}",, +GSM6604492,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 3rd day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3066,31053,counts,pixel,4.1083334709049995,platform_constant,True,H&E,4.1083334709049995,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604492,,,train,hesrt,samples/GSE214349/GSM6604492,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM6604493,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 7th day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3145,31053,counts,pixel,4.024726671393898,platform_constant,True,H&E,4.024726671393898,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604493,,,train,hesrt,samples/GSE214349/GSM6604493,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM6604494,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 7th day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3099,31053,counts,pixel,4.004235142405109,platform_constant,True,H&E,4.004235142405109,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604494,,,train,hesrt,samples/GSE214349/GSM6604494,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM6604495,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0043510,brain injury,disease,luna,,The needle-puncture group with blood injection at 7th day,adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3003,31053,counts,pixel,3.983743088618563,platform_constant,True,H&E,3.983743088618563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604495,,,train,hesrt,samples/GSE214349/GSM6604495,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM6604496,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,The no-surgery group (control),adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3232,31053,counts,pixel,4.095053275411956,platform_constant,True,H&E,4.095053275411956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604496,,,train,hesrt,samples/GSE214349/GSM6604496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM6604496,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,The no-surgery group (control),adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3232,31053,counts,pixel,4.0950532754119555,platform_constant,True,H&E,4.0950532754119555,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604496,,,train,hesrt,samples/GSE214349/GSM6604496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM6604497,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,The no-surgery group (control),adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3156,31053,counts,pixel,4.062568211028085,platform_constant,True,H&E,4.062568211028085,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604497,,,train,hesrt,samples/GSE214349/GSM6604497,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6604498,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,The needle-puncture group without blood injection (sham),adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3027,31053,counts,pixel,4.105191283514357,platform_constant,True,H&E,4.105191283514357,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604498,,,train,hesrt,samples/GSE214349/GSM6604498,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6604499,GSE214349,GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,The needle-puncture group without blood injection (sham),adult,age rule: age with unit,not stated,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3070,31053,counts,pixel,3.9772334365042967,platform_constant,True,H&E,3.9772334365042967,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36825001,,GSM6604499,,,train,hesrt,samples/GSE214349/GSM6604499,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -1773,7 +1773,7 @@ GSM6612125,GSE214571,GSE214571,Spatial transcriptomics reveals functional compar GSM6612126,GSE214571,GSE214571,Spatial transcriptomics reveals functional compartmentalization of estrogen receptor positive (ER+) breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,uberon_chain,UBERON:0000310,breast,SC31 breast cancer PDX,xenograft,MONDO:0006512,estrogen-receptor positive breast cancer,disease,luna,ER+ breast cancer,Placebo,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1967,68886,counts,pixel,4.099557578697796,platform_constant,True,H&E,4.099557578697796,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38282415,,GSM6612126,,,train,hesrt,samples/GSE214571/GSM6612126,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.97, ""disease_status"": 0.97, ""uberon"": 0.8, ""life_stage"": 1.0}",, GSM6612127,GSE214571,GSE214571,Spatial transcriptomics reveals functional compartmentalization of estrogen receptor positive (ER+) breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,uberon_chain,UBERON:0000310,breast,SC31 breast cancer PDX,xenograft,MONDO:0006512,estrogen-receptor positive breast cancer,disease,luna,ER+ breast cancer,E2,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2163,68886,counts,pixel,4.250643352335137,platform_constant,True,H&E,4.250643352335137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38282415,,GSM6612127,,,train,hesrt,samples/GSE214571/GSM6612127,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM6613077,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,mondo_predicate (Luna: perturbation),,Day3 Isoproterenol,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1917,32285,counts,pixel,4.2750908528948415,platform_constant,True,H&E,4.2750908528948415,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,GSM6613077,,,train,hesrt,samples/GSE214611/GSM6613077,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6613078,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,1HR and 4HR Day3 Needle Pass,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3057,32285,counts,pixel,3.941242040556144,platform_constant,True,H&E,3.941242040556144,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,GSM6613078,,,train,hesrt,samples/GSE214611/GSM6613078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6613078,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,1HR and 4HR Day3 Needle Pass,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3057,32285,counts,pixel,3.9412420405561437,platform_constant,True,H&E,3.9412420405561437,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,GSM6613078,,,train,hesrt,samples/GSE214611/GSM6613078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6613079,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,mondo_predicate (Luna: perturbation),myocardial injury,Day3 TAC Needle pass,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3123,32285,counts,pixel,4.47215106287996,platform_constant,True,H&E,4.47215106287996,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,GSM6613079,,,train,hesrt,samples/GSE214611/GSM6613079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6613080,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,mondo_predicate (Luna: perturbation),,Day3 Sham Needle pass,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3540,32285,counts,pixel,4.244113146314886,platform_constant,True,H&E,4.244113146314886,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,CG-bcd077e3eb1d,cross_gse_redeposit,GSM8305627,train,hesrt,samples/GSE214611/GSM6613080,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6613081,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,mondo_predicate (Luna: perturbation),,Day3 Sham Needle pass,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2696,32285,counts,pixel,4.275090852894863,platform_constant,True,H&E,4.275090852894863,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,CG-3ac3354a16fd,cross_gse_redeposit,GSM8305628,train,hesrt,samples/GSE214611/GSM6613081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -1786,7 +1786,7 @@ GSM6613087,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the GSM6613088,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,Day7 MI,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2428,32285,counts,pixel,4.2750908528948415,platform_constant,True,H&E,4.2750908528948415,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,CG-5599f7e6a8ac,cross_gse_redeposit,GSM8305637,train,hesrt,samples/GSE214611/GSM6613088,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6613089,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,Day7 MI,adult,age rule: age with unit,not stated,8–12 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2363,32285,counts,pixel,4.2750908528948415,platform_constant,True,H&E,4.2750908528948415,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,CG-642cb8156460,cross_gse_redeposit,GSM8305638,train,hesrt,samples/GSE214611/GSM6613089,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6613090,GSE214611,GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,,,disease,luna,ST-elevation myocardial infarction,STEMI,adult,age rule: age in years,adult,45 years,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1551,36601,counts,pixel,4.561515746777104,platform_constant,True,H&E,4.561515746777104,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39086770,,CG-0c78b365b4df,cross_gse_redeposit,GSM8305663,train,hesrt,samples/GSE214611/GSM6613090,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6619680,GSE214989,GSE214989,Spatial transcriptomics profiling of the developing mouse embryo,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,12.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2397,22496,counts,pixel,0.1721167846453571,platform_constant,True,H&E,0.5000007819945902,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36604544,,GSM6619680,,,train,hesrt,samples/GSE214989/GSM6619680,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6619680,GSE214989,GSE214989,Spatial transcriptomics profiling of the developing mouse embryo,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,12.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2397,22496,counts,pixel,0.17211678464535718,platform_constant,True,H&E,0.5000007819945902,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36604544,,GSM6619680,,,train,hesrt,samples/GSE214989/GSM6619680,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6631766,GSE215305,GSE215305,Muscle injury induces a transient senescence-like state that is required for myofiber growth during muscle regeneration [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius muscle,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,muscular dystrophy,D2-mdx,adult,age rule: age with unit,adult,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1586,32285,counts,pixel,4.170060714701638,platform_constant,True,H&E,4.170060714701638,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36190443,,GSM6631766,,,train,hesrt,samples/GSE215305/GSM6631766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM6634335,GSE215361,GSE215361,Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0004992,cancer,disease,luna,lung adenocarcinoma,PBS control,adult,age rule: age with unit,adult,21–25 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3189,30970,counts,pixel,5.009027073246927,platform_constant,True,H&E,5.009027073246927,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37127830,,GSM6634335,,,train,hesrt,samples/GSE215361/GSM6634335,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.54, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM6634336,GSE215361,GSE215361,Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0004992,cancer,disease,luna,lung adenocarcinoma,PBS control,adult,age rule: age with unit,adult,21–25 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2947,30970,counts,pixel,4.508124135106259,platform_constant,True,H&E,4.508124135106259,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37127830,,GSM6634336,,,train,hesrt,samples/GSE215361/GSM6634336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.53, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation @@ -1798,7 +1798,7 @@ GSM6634341,GSE215361,GSE215361,Conserved transcriptional connectivity of regulat GSM6634342,GSE215361,GSE215361,Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0004992,cancer,disease,mondo_predicate (Luna: perturbation),lung adenocarcinoma,Diphtheria Toxin treated,adult,age rule: age with unit,adult,21–25 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3072,30970,counts,pixel,5.009027073246927,platform_constant,True,H&E,5.009027073246927,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37127830,,GSM6634342,,,train,hesrt,samples/GSE215361/GSM6634342,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6645167,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,249,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.182351164129467,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645167,,,train,sda-all,samples/GSE215897/GSM6645167,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.39}",life_stage,low_confidence_annotation GSM6645168,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,388,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.182729541510399,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645168,,,train,sda-all,samples/GSE215897/GSM6645168,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.22}",life_stage,low_confidence_annotation -GSM6645169,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,319,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.142052506483863,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645169,,,train,sda-all,samples/GSE215897/GSM6645169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 0.29}",life_stage,low_confidence_annotation +GSM6645169,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,319,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.1420525064838625,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645169,,,train,sda-all,samples/GSE215897/GSM6645169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 0.29}",life_stage,low_confidence_annotation GSM6645170,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,234,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.140920274038452,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645170,,,train,sda-all,samples/GSE215897/GSM6645170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.34}",life_stage,low_confidence_annotation GSM6645171,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,286,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.1839991835455335,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645171,,,train,sda-all,samples/GSE215897/GSM6645171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.31}",life_stage,low_confidence_annotation GSM6645172,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,7,unknown,,GSE215897:XDD399,XDD399,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,386,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.1408822512446095,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645172,,,train,sda-all,samples/GSE215897/GSM6645172,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.19}",life_stage,low_confidence_annotation @@ -1826,7 +1826,7 @@ GSM6645193,GSE215897,GSE215897,A topographic atlas defines developmental origins GSM6645194,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,6,unknown,,GSE215897:XDD5743_326,XDD5743_326,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,369,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.355006264635587,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645194,,,train,sda-all,samples/GSE215897/GSM6645194,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.48}",life_stage,low_confidence_annotation GSM6645195,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,8.5,unknown,,GSE215897:XDD0600_318,XDD0600_318,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,954,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.354521889092953,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645195,,,train,sda-all,samples/GSE215897/GSM6645195,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.8}",, GSM6645196,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,8.5,unknown,,GSE215897:XDD0600_318,XDD0600_318,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,940,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.35318848373424,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645196,,,train,sda-all,samples/GSE215897/GSM6645196,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.91}",, -GSM6645197,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,13.5,unknown,,GSE215897:XDD359,XDD359,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3468,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.184831754473692,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645197,,,train,sda-all,samples/GSE215897/GSM6645197,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.79}",, +GSM6645197,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,13.5,unknown,,GSE215897:XDD359,XDD359,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3468,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.1848317544736915,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645197,,,train,sda-all,samples/GSE215897/GSM6645197,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.79}",, GSM6645198,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,13.5,unknown,,GSE215897:XDD359,XDD359,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4881,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.098401479988523,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645198,,,train,sda-all,samples/GSE215897/GSM6645198,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.5700000000000001}",life_stage,low_confidence_annotation GSM6645199,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,13.5,unknown,,GSE215897:XDD359,XDD359,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2113,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.184960175623504,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645199,,,train,sda-all,samples/GSE215897/GSM6645199,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.71}",, GSM6645200,GSE215897,GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,fetal,luna,fetal,13.5,unknown,,GSE215897:XDD359,XDD359,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4508,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.221256005382574,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,36646791,,GSM6645200,,,train,sda-all,samples/GSE215897/GSM6645200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, @@ -1842,10 +1842,10 @@ GSM6661597,GSE216214,GSE216214,Defining the spatial-molecular map of fibrotic te GSM6661598,GSE216214,GSE216214,Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,murine hindpaw,primary tissue,,,perturbation,luna,,Day 21,adult,age rule: age with unit,adult,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1706,32286,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36417854,,GSM6661598,,,train,hesrt,samples/GSE216214/GSM6661598,sda-tissue-disease-2.5,"{""organ"": 0.42, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM6661599,GSE216214,GSE216214,Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,murine hindpaw,primary tissue,,,perturbation,luna,,Day 28,adult,age rule: age with unit,adult,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,875,32286,counts,pixel,4.55487518674277,platform_constant,True,H&E,4.55487518674277,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36417854,,GSM6661599,,,train,hesrt,samples/GSE216214/GSM6661599,sda-tissue-disease-2.5,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM6661600,GSE216214,GSE216214,Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,murine hindpaw,primary tissue,,,perturbation,luna,,Day 28,adult,age rule: age with unit,adult,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,873,32286,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36417854,,GSM6661600,,,train,hesrt,samples/GSE216214/GSM6661600,sda-tissue-disease-2.5,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM7837730,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Glands,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,female,female,GSE216542:rep1,rep1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,6597,19465,counts,pixel,0.222345232377783,platform_constant,True,H&E,0.5000021778686704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM7837730,,,train,hesrt,samples/GSE216542/GSM7837730,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7837731,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Glands,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,female,female,GSE216542:rep2,rep2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,9745,19465,counts,pixel,0.2220988682175898,platform_constant,True,H&E,0.50000522760335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM7837731,,,train,hesrt,samples/GSE216542/GSM7837731,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM7837730,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Glands,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,female,female,GSE216542:rep1,rep1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,6597,19465,counts,pixel,0.22234523237778303,platform_constant,True,H&E,0.5000021778686704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM7837730,,,train,hesrt,samples/GSE216542/GSM7837730,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7837731,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Glands,primary tissue,,,normal,luna,,,aged,age rule: age with unit,aged,18 months,female,female,GSE216542:rep2,rep2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,9745,19465,counts,pixel,0.22209886821758984,platform_constant,True,H&E,0.50000522760335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM7837731,,,train,hesrt,samples/GSE216542/GSM7837731,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8155366,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Gland,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,3 months,female,female,GSE216542:rep1,rep1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4403,19465,counts,pixel,0.221956581327033,platform_constant,True,H&E,0.4999995238691328,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM8155366,,,train,hesrt,samples/GSE216542/GSM8155366,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8155367,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Gland,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,3 months,female,female,GSE216542:rep2,rep2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4070,19465,counts,pixel,0.2220988682175898,platform_constant,True,H&E,0.5000025360675613,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM8155367,,,train,hesrt,samples/GSE216542/GSM8155367,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8155367,GSE216542,GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,Mammary Gland,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,3 months,female,female,GSE216542:rep2,rep2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4070,19465,counts,pixel,0.22209886821758984,platform_constant,True,H&E,0.5000025360675613,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39587369,,GSM8155367,,,train,hesrt,samples/GSE216542/GSM8155367,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6703212,GSE216992,GSE216992,Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001981,blood vessel,vascular graft,engineered tissue,,,disease,luna,Loeys-Dietz syndrome,TGFBR1A230T/+,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,560,17943,counts,pixel,4.8735156190764615,platform_constant,True,H&E,4.8735156190764615,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38718134,,GSM6703212,,,val,hesrt,samples/GSE216992/GSM6703212,sda-tissue-disease-2.3,"{""organ"": 0.67, ""sample_kind"": 0.98, ""disease_status"": 0.64, ""uberon"": 0.85, ""life_stage"": 0.99}",, GSM6703213,GSE216992,GSE216992,Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001981,blood vessel,vascular graft,engineered tissue,,,disease,luna,Loeys-Dietz syndrome,TGFBR1A230T/+,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,865,17943,counts,pixel,4.872153563800366,platform_constant,True,H&E,4.872153563800366,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38718134,,GSM6703213,,,val,hesrt,samples/GSE216992/GSM6703213,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": 0.91, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6703214,GSE216992,GSE216992,Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001981,blood vessel,vascular graft,engineered tissue,,,normal,luna,,TGFBR1+/+,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1100,17943,counts,pixel,4.545990832864003,platform_constant,True,H&E,4.545990832864003,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38718134,,GSM6703214,,,val,hesrt,samples/GSE216992/GSM6703214,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -1874,16 +1874,16 @@ GSM9044530,GSE217237,GSE217237,Prospective transcriptional landscape of ectocerv GSM9044531,GSE217237,GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,Ectocervix,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,712,36601,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.185614889970947,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35533147;37004130;39439565;39687623;39762272;41218071,,GSM9044531,,,train,sda-all,samples/GSE217237/GSM9044531,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9044532,GSE217237,GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,Ectocervix,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,418,36601,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.185244073932617,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35533147;37004130;39439565;39687623;39762272;41218071,,GSM9044532,,,train,sda-all,samples/GSE217237/GSM9044532,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9044533,GSE217237,GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,Ectocervix,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,307,36601,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.185861928923784,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35533147;37004130;39439565;39687623;39762272;41218071,,GSM9044533,,,train,sda-all,samples/GSE217237/GSM9044533,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9044534,GSE217237,GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,Ectocervix,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,969,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.140034183524159,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35533147;37004130;39439565;39687623;39762272;41218071,,GSM9044534,,,train,sda-all,samples/GSE217237/GSM9044534,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9044534,GSE217237,GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,Ectocervix,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,969,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.1400341835241585,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35533147;37004130;39439565;39687623;39762272;41218071,,GSM9044534,,,train,sda-all,samples/GSE217237/GSM9044534,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9044535,GSE217237,GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,Ectocervix,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1130,36601,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.1859269702964585,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35533147;37004130;39439565;39687623;39762272;41218071,,GSM9044535,,,train,sda-all,samples/GSE217237/GSM9044535,sda-tissue-disease-2.3,"{""organ"": 0.66, ""sample_kind"": 0.99, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6716963,GSE217414,GSE217414,Liver metastases originating from 4 colorectal cancer patients (CRC-LM).,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver Metastasis,metastasis,MONDO:1060297;MONDO:0024331,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,luna,colorectal cancer liver metastasis,FOLFIRI+Cetuximab/Irinotecan+Cetuximab,aged,age rule: bare number read as years,aged,71,female,female,GSE217414:Patient 1,Patient 1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2887,17943,counts,pixel,4.311973675048798,platform_constant,True,H&E,4.311973675048798,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37144485,,GSM6716963,,,test,hesrt,samples/GSE217414/GSM6716963,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM6716964,GSE217414,GSE217414,Liver metastases originating from 4 colorectal cancer patients (CRC-LM).,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver Metastasis,metastasis,MONDO:1060297;MONDO:0024331,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,luna,colorectal cancer liver metastasis,FOLFOX,aged,age rule: bare number read as years,aged,84,female,female,GSE217414:Patient 2,Patient 2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3379,17943,counts,pixel,4.344437002092949,platform_constant,True,H&E,4.344437002092949,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37144485,,GSM6716964,,,test,hesrt,samples/GSE217414/GSM6716964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6716965,GSE217414,GSE217414,Liver metastases originating from 4 colorectal cancer patients (CRC-LM).,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver Metastasis,metastasis,MONDO:1060297;MONDO:0024331,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,luna,colorectal cancer liver metastasis,FOLFOX,aged,age rule: bare number read as years,aged,69,male,male,GSE217414:Patient 3,Patient 3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2091,17943,counts,pixel,4.1869890179338585,platform_constant,True,H&E,4.1869890179338585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37144485,,GSM6716965,,,test,hesrt,samples/GSE217414/GSM6716965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6716966,GSE217414,GSE217414,Liver metastases originating from 4 colorectal cancer patients (CRC-LM).,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver Metastasis,metastasis,MONDO:1060297;MONDO:0024331,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,luna,colorectal cancer liver metastasis,FOLFOX+Cetuximab/Xeloda+Cetuximab,adult,age rule: bare number read as years,adult,64,female,female,GSE217414:Patient 4,Patient 4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2317,17943,counts,pixel,4.199622358083467,platform_constant,True,H&E,4.199622358083467,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37144485,,GSM6716966,,,test,hesrt,samples/GSE217414/GSM6716966,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, -GSM6722694,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,801,32471,counts,pixel,4.213671381553247,platform_constant,True,H&E,4.213671381553247,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722694,,,val,hesrt,samples/GSE217615/GSM6722694,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6722694,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,801,32471,counts,pixel,4.2136713815532465,platform_constant,True,H&E,4.2136713815532465,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722694,,,val,hesrt,samples/GSE217615/GSM6722694,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6722695,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,not building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,372,32471,counts,pixel,4.213392714350981,platform_constant,True,H&E,4.213392714350981,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722695,,,val,hesrt,samples/GSE217615/GSM6722695,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6722696,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,not building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,371,32471,counts,pixel,4.225827751078025,platform_constant,True,H&E,4.225827751078025,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722696,,,val,hesrt,samples/GSE217615/GSM6722696,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM6722697,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,not building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,445,32471,counts,pixel,4.216982223825887,platform_constant,True,H&E,4.216982223825887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722697,,,val,hesrt,samples/GSE217615/GSM6722697,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM6722697,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,not building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,445,32471,counts,pixel,4.2169822238258865,platform_constant,True,H&E,4.2169822238258865,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722697,,,val,hesrt,samples/GSE217615/GSM6722697,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM6722698,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,not building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,399,32471,counts,pixel,4.226275394359665,platform_constant,True,H&E,4.226275394359665,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722698,,,val,hesrt,samples/GSE217615/GSM6722698,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6722699,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,838,32471,counts,pixel,4.226275394359701,platform_constant,True,H&E,4.226275394359701,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722699,,,val,hesrt,samples/GSE217615/GSM6722699,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",, GSM6722700,GSE217615+GSE217619,GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],Mchenga conophoros,35575,,Mchenga conophoros,35575,,False,False,GEO organism field,Mchenga conophoros,,brain,luna,UBERON:0001893,telencephalon,Telencephalon,primary tissue,,,normal,luna,,building,adult,luna,adult,adult (>180 days),unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,747,32471,counts,pixel,4.228066916268279,platform_constant,True,H&E,4.228066916268279,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37580322,10.1038/s41467-023-40331-9,GSM6722700,,,val,hesrt,samples/GSE217615/GSM6722700,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.98}",, @@ -1898,7 +1898,7 @@ GSM7100174,GSE217664,GSE217664,Decoding Trp53 regulatory program in various tiss GSM7100175,GSE217664,GSE217664,Decoding Trp53 regulatory program in various tissues and organs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,thymus,luna,UBERON:0002370,thymus,Thymus,primary tissue,,,normal,luna,,Trp53+/+,adult,age rule: age with unit,adult,17 weeks,female,Female,,,,,BMK S1000,GEO series text (assay_final.csv),BMKMANU S1000/S3000,sequencing-based,other,,,spot,1128950,54838,counts,unstated,,unresolved,False,,,,,,units_unstated,zero_count_observations,VERIFIED,,,,40887856,,GSM7100175,,,train,sda-all,samples/GSE217664/GSM7100175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6727274,GSE217828,GSE217828,YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Control,adult,luna,adult,8-10 weeks old adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2823,32285,counts,pixel,0.6493369596450738,platform_constant,True,H&E,0.6493369596450738,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38510108,,GSM6727274,,,train,hesrt,samples/GSE217828/GSM6727274,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6727275,GSE217828,GSE217828,YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,YAP5SA,adult,luna,adult,8-10 weeks old adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2826,32285,counts,pixel,0.6493369596450738,platform_constant,True,H&E,0.6493369596450738,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38510108,,GSM6727275,,,train,hesrt,samples/GSE217828/GSM6727275,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6727528,GSE217843,GSE217843,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer - Spatial transcriptomics of mouse PDAC samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3444,32285,counts,pixel,4.958336913179712,platform_constant,True,H&E,4.958336913179712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37914939,,GSM6727528,,,train,hesrt,samples/GSE217843/GSM6727528,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM6727528,GSE217843,GSE217843,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer - Spatial transcriptomics of mouse PDAC samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3444,32285,counts,pixel,4.9583369131797115,platform_constant,True,H&E,4.9583369131797115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37914939,,GSM6727528,,,train,hesrt,samples/GSE217843/GSM6727528,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM6727529,GSE217843+GSE217847,GSE217843,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer - Spatial transcriptomics of mouse PDAC samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,WT,not stated,luna,not stated,,female,F,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3822,32285,counts,um,1.0,verified,True,undetermined,4.918473993149475,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,37914939,,GSM6727529,,,train,sda-all,samples/GSE217843/GSM6727529,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM7655264,GSE217847+GSE237846,GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,Primary tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,PDAC,,not stated,luna,not stated,,unknown,,GSE217847:Patient LPDAC30,Patient LPDAC30,,,Other,release v3,not named in GEO,sequencing-based,other,,,cell,10060,97,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,37914939,,GSM7655264,,,train,sda-all,samples/GSE217847/GSM7655264,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7655265,GSE217847+GSE237846,GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,Primary tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,PDAC,,not stated,luna,not stated,,unknown,,GSE217847:Patient LPDAC30,Patient LPDAC30,,,Other,release v3,not named in GEO,sequencing-based,other,,,cell,20754,97,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,37914939,,GSM7655265,,,train,sda-all,samples/GSE217847/GSM7655265,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -1913,8 +1913,8 @@ GSM7655273,GSE217847+GSE237846,GSE217847,IL-1b+ tumor-associated macrophages fue GSM7655274,GSE217847+GSE237846,GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,Primary tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,PDAC,,not stated,luna,not stated,,unknown,,GSE217847:Patient LIMET165,Patient LIMET165,,,Other,release v3,not named in GEO,sequencing-based,other,,,cell,15620,98,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,37914939,,GSM7655274,,,train,sda-all,samples/GSE217847/GSM7655274,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7655275,GSE217847+GSE237846,GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,Primary tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,PDAC,,not stated,luna,not stated,,unknown,,GSE217847:Patient LIMET325,Patient LIMET325,,,Other,release v3,not named in GEO,sequencing-based,other,,,cell,22290,98,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,37914939,,GSM7655275,,,train,sda-all,samples/GSE217847/GSM7655275,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7655276,GSE217847+GSE237846,GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,Primary tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,PDAC,,not stated,luna,not stated,,unknown,,GSE217847:Patient LIMET325,Patient LIMET325,,,Other,release v3,not named in GEO,sequencing-based,other,,,cell,2425,94,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,37914939,,GSM7655276,,,train,sda-all,samples/GSE217847/GSM7655276,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6733377,GSE218046,GSE218046,Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000979,tibia,Distal tibia fracture callus,primary tissue,MONDO:0005320;MONDO:0018975,tibia fracture;neurofibromatosis type 1,disease,luna,,10-day post-surgery,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3045,19465,counts,pixel,0.4405286343612334,platform_constant,True,H&E,0.5000023910312669,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38990653,,GSM6733377,,,train,hesrt,samples/GSE218046/GSM6733377,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.75, ""life_stage"": 1.0}",, -GSM6733378,GSE218046,GSE218046,Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000979,tibia,Distal tibia fracture callus,primary tissue,MONDO:0005320;MONDO:0018975,tibia fracture;neurofibromatosis type 1,disease,luna,,10-day post-surgery,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3335,19465,counts,pixel,0.4405286343612334,platform_constant,True,H&E,0.4999947928057403,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38990653,,GSM6733378,,,train,hesrt,samples/GSE218046/GSM6733378,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.89, ""life_stage"": 1.0}",, +GSM6733377,GSE218046,GSE218046,Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000979,tibia,Distal tibia fracture callus,primary tissue,MONDO:0005320;MONDO:0018975,tibia fracture;neurofibromatosis type 1,disease,luna,,10-day post-surgery,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3045,19465,counts,pixel,0.44052863436123346,platform_constant,True,H&E,0.5000023910312669,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38990653,,GSM6733377,,,train,hesrt,samples/GSE218046/GSM6733377,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.75, ""life_stage"": 1.0}",, +GSM6733378,GSE218046,GSE218046,Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000979,tibia,Distal tibia fracture callus,primary tissue,MONDO:0005320;MONDO:0018975,tibia fracture;neurofibromatosis type 1,disease,luna,,10-day post-surgery,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3335,19465,counts,pixel,0.44052863436123346,platform_constant,True,H&E,0.49999479280574033,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38990653,,GSM6733378,,,train,hesrt,samples/GSE218046/GSM6733378,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM6751471,GSE218539,GSE218539,Spatial Transcriptomics in the Human Left Atrial Appendage and Pulmonary Vein Sleeve,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0002016,pulmonary vein,donor heart,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,650,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.670762685829737,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41314481,,GSM6751471,,,train,sda-all,samples/GSE218539/GSM6751471,sda-tissue-disease-2.3,"{""organ"": 0.64, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6751472,GSE218539,GSE218539,Spatial Transcriptomics in the Human Left Atrial Appendage and Pulmonary Vein Sleeve,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006630,left atrium auricular region,donor heart,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1015,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.501209993905942,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41314481,,GSM6751472,,,train,sda-all,samples/GSE218539/GSM6751472,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6751473,GSE218539,GSE218539,Spatial Transcriptomics in the Human Left Atrial Appendage and Pulmonary Vein Sleeve,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0002016,pulmonary vein,donor heart,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1095,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.01853952468702,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41314481,,GSM6751473,,,train,sda-all,samples/GSE218539/GSM6751473,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation @@ -1933,7 +1933,7 @@ GSM6756180,GSE218761,GSE218761,Cardiac reprogramming and Gata4 overexpression re GSM6760693,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,aged,age rule: age in years,aged,70 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2454,33538,counts,um,1.0,verified,True,H&E-like (heuristic),3.993312739156748,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760693,,,train,sda-all,samples/GSE218951/GSM6760693,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6760694,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,aged,age rule: age in years,aged,70 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2551,33538,counts,um,1.0,verified,True,H&E-like (heuristic),3.993217798025974,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760694,,,train,sda-all,samples/GSE218951/GSM6760694,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6760695,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,,,aged,age rule: age in years,aged,84 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3244,33538,counts,um,1.0,verified,True,H&E-like (heuristic),4.024040512900366,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760695,,,train,sda-all,samples/GSE218951/GSM6760695,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6760696,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,,,aged,age rule: age in years,aged,84 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3202,33538,counts,um,1.0,verified,True,H&E-like (heuristic),3.994031390746621,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760696,,,train,sda-all,samples/GSE218951/GSM6760696,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM6760696,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,,,aged,age rule: age in years,aged,84 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3202,33538,counts,um,1.0,verified,True,H&E-like (heuristic),3.9940313907466214,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760696,,,train,sda-all,samples/GSE218951/GSM6760696,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6760697,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,aged,age rule: age in years,aged,71 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2284,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.284762259725873,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760697,,,train,sda-all,samples/GSE218951/GSM6760697,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6760698,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,aged,age rule: age in years,aged,71 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1899,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.159626938764066,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760698,,,train,sda-all,samples/GSE218951/GSM6760698,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6760699,GSE218951,GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,adult,age rule: age in years,adult,52 year-old,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3099,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.162403846527313,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM6760699,,,train,sda-all,samples/GSE218951/GSM6760699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -1994,7 +1994,7 @@ GSM6806992,GSE220572,GSE220572,Reconstruction of 3-dimensional tissue organizati GSM6806993,GSE220572,GSE220572,Reconstruction of 3-dimensional tissue organization at the single-cell resolution [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0001332,prepuce of penis,Foreskin,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,Neonatal,male,male,GSE220572:donor1,donor1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,653,17943,counts,pixel,4.975097036798376,platform_constant,True,H&E,4.975097036798376,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36711844;38915088,,GSM6806993,,,train,hesrt,samples/GSE220572/GSM6806993,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.75, ""life_stage"": 1.0}",, GSM6820295,GSE220799,GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1807,32589,counts,pixel,4.795038284650151,platform_constant,True,H&E,4.795038284650151,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39002542,,GSM6820295,,,train,hesrt,samples/GSE220799/GSM6820295,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6820296,GSE220799,GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2174,32589,counts,pixel,4.795038284650151,platform_constant,True,H&E,4.795038284650151,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39002542,,GSM6820296,,,train,hesrt,samples/GSE220799/GSM6820296,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM6820297,GSE220799,GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,Sema6d-/-,adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2101,32589,counts,pixel,4.361450526435919,platform_constant,True,H&E,4.361450526435919,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39002542,,GSM6820297,,,train,hesrt,samples/GSE220799/GSM6820297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6820297,GSE220799,GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,Sema6d-/-,adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2101,32589,counts,pixel,4.3614505264359185,platform_constant,True,H&E,4.3614505264359185,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39002542,,GSM6820297,,,train,hesrt,samples/GSE220799/GSM6820297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6820298,GSE220799,GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,Sema6d-/-,adult,age rule: age with unit,juvenile,6–8 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2296,32589,counts,pixel,4.79694654550583,platform_constant,True,H&E,4.79694654550583,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39002542,,GSM6820298,,,train,hesrt,samples/GSE220799/GSM6820298,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6820635,GSE220817,GSE220817,neuroendocrine control of planarian regeneration (Spatial transcriptome),Schmidtea mediterranea,79327,freshwater planarian,Schmidtea mediterranea,79327,,False,False,GEO organism field,Schmidtea mediterranea,,other,luna,UBERON:0000974,neck,neck,primary tissue,,,perturbation,luna,,amputation,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,929,36035,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM6820635,,,train,sda-all,samples/GSE220817/GSM6820635,sda-tissue-disease-2.4,"{""organ"": 0.9, ""sample_kind"": 0.97, ""disease_status"": 0.96, ""uberon"": 0.91, ""life_stage"": 0.76}",, GSM6833484,GSE220978,GSE220978,Spatial Multi-omics Reveals the Heterogeneity of Tumor Microenvironment in the OSF-Associated OSCC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,OSF-associated OSCC,tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,OSF-associated OSCC,OSF-associated OSCC,not stated,luna,not stated,,unknown,,GSE220978:Patient 1,Patient 1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4199,36601,counts,pixel,4.272032412948065,platform_constant,True,H&E,4.272032412948065,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38229179,,GSM6833484,,,train,hesrt,samples/GSE220978/GSM6833484,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, @@ -2020,8 +2020,8 @@ GSM6859073,GSE221359,GSE221359,In vivo macrophage engineering reshapes the tumor GSM6886495,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,RRST,neonatal or infant,age rule: postnatal day,neonatal or infant,4 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1305,19465,counts,pixel,4.141824546650327,platform_constant,True,H&E,4.141824546650327,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886495,,,train,hesrt,samples/GSE221571/GSM6886495,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.24, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM6886496,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,RRST,neonatal or infant,age rule: postnatal day,neonatal or infant,4 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1202,19465,counts,pixel,4.148965623454878,platform_constant,True,H&E,4.148965623454878,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886496,,,train,hesrt,samples/GSE221571/GSM6886496,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 0.34, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM6886497,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,standard,neonatal or infant,age rule: postnatal day,neonatal or infant,4 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1298,32285,counts,pixel,4.141824546650327,platform_constant,True,H&E,4.141824546650327,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886497,,,train,hesrt,samples/GSE221571/GSM6886497,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.22, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM6886498,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,RRST,neonatal or infant,age rule: postnatal day,neonatal or infant,11 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2935,19465,counts,pixel,4.113480339255204,platform_constant,True,H&E,4.113480339255204,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886498,,,train,hesrt,samples/GSE221571/GSM6886498,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.25, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM6886499,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,RRST,neonatal or infant,age rule: postnatal day,neonatal or infant,11 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1788,19465,counts,pixel,4.141824546650367,platform_constant,True,H&E,4.141824546650367,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886499,,,train,hesrt,samples/GSE221571/GSM6886499,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.29, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM6886498,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,RRST,neonatal or infant,age rule: postnatal day,neonatal or infant,11 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2935,19465,counts,pixel,4.1134803392552035,platform_constant,True,H&E,4.1134803392552035,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886498,,,train,hesrt,samples/GSE221571/GSM6886498,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.25, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM6886499,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,RRST,neonatal or infant,age rule: postnatal day,neonatal or infant,11 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1788,19465,counts,pixel,4.1418245466503665,platform_constant,True,H&E,4.1418245466503665,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886499,,,train,hesrt,samples/GSE221571/GSM6886499,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.29, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM6886500,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0004765,skeletal element,bone/cartilage,primary tissue,,,normal,luna,,standard,neonatal or infant,age rule: postnatal day,neonatal or infant,11 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1240,32285,counts,pixel,4.141824546650327,platform_constant,True,H&E,4.141824546650327,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886500,,,train,hesrt,samples/GSE221571/GSM6886500,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.26, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM6886501,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,RRST,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4426,19465,counts,pixel,4.113450290404371,platform_constant,True,H&E,4.113450290404371,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886501,,,train,hesrt,samples/GSE221571/GSM6886501,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 0.54}",life_stage,low_confidence_annotation GSM6886502,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,RRST,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4492,19465,counts,pixel,4.148965623454898,platform_constant,True,H&E,4.148965623454898,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886502,,,train,hesrt,samples/GSE221571/GSM6886502,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 0.38}",life_stage,low_confidence_annotation @@ -2030,21 +2030,21 @@ GSM6886504,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of de GSM6886505,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,standard,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4514,32285,counts,pixel,4.185886509912579,platform_constant,True,H&E,4.185886509912579,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886505,,,train,hesrt,samples/GSE221571/GSM6886505,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 0.45}",life_stage,low_confidence_annotation GSM6886506,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,standard,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4332,32285,counts,pixel,4.185886509912579,platform_constant,True,H&E,4.185886509912579,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886506,,,train,hesrt,samples/GSE221571/GSM6886506,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",, GSM6886507,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,standard,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4394,32285,counts,pixel,4.193097323315167,platform_constant,True,H&E,4.193097323315167,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886507,,,train,hesrt,samples/GSE221571/GSM6886507,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 0.48}",life_stage,low_confidence_annotation -GSM6886508,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,standard,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4114,32285,counts,pixel,3.995877593171024,platform_constant,True,H&E,3.995877593171024,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886508,,,train,hesrt,samples/GSE221571/GSM6886508,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 0.43}",life_stage,low_confidence_annotation -GSM6919905,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor19,Donor19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,28463,counts,pixel,3.963495643888813,platform_constant,True,H&E,3.963495643888813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,GSM6919905,,,val,hesrt,samples/GSE222322/GSM6919905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6919906,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor19,Donor19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4931,28463,counts,pixel,3.963495643888796,platform_constant,True,H&E,3.963495643888796,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,GSM6919906,,,val,hesrt,samples/GSE222322/GSM6919906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM6886508,GSE221571,GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,standard,not stated,luna,not stated,young mice,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4114,32285,counts,pixel,3.9958775931710244,platform_constant,True,H&E,3.9958775931710244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36720873,,GSM6886508,,,train,hesrt,samples/GSE221571/GSM6886508,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 0.43}",life_stage,low_confidence_annotation +GSM6919905,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor19,Donor19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,28463,counts,pixel,3.9634956438888134,platform_constant,True,H&E,3.9634956438888134,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,GSM6919905,,,val,hesrt,samples/GSE222322/GSM6919905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6919906,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor19,Donor19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4931,28463,counts,pixel,3.9634956438887956,platform_constant,True,H&E,3.9634956438887956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,GSM6919906,,,val,hesrt,samples/GSE222322/GSM6919906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6919907,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor19,Donor19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,28463,counts,pixel,3.923855315091428,platform_constant,True,H&E,3.923855315091428,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,GSM6919907,,,val,hesrt,samples/GSE222322/GSM6919907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6919908,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor19,Donor19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4978,28463,counts,pixel,3.913938200789803,platform_constant,True,H&E,3.913938200789803,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,GSM6919908,,,val,hesrt,samples/GSE222322/GSM6919908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6919909,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3431,36601,counts,pixel,3.924455548722752,platform_constant,True,H&E,3.924455548722752,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-c49624f02479,cross_gse_redeposit,GSM9721741,val,hesrt,samples/GSE222322/GSM6919909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM6919910,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2977,36601,counts,pixel,3.894618090198181,platform_constant,True,H&E,3.894618090198181,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-dfe0e3cdd7c3,cross_gse_redeposit,GSM9721742,val,hesrt,samples/GSE222322/GSM6919910,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6919910,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2977,36601,counts,pixel,3.8946180901981813,platform_constant,True,H&E,3.8946180901981813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-dfe0e3cdd7c3,cross_gse_redeposit,GSM9721742,val,hesrt,samples/GSE222322/GSM6919910,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6919911,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L5/S1),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor47,Donor47,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4914,36601,counts,pixel,3.892535042032913,platform_constant,True,H&E,3.892535042032913,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-6c11a221fa6c,cross_gse_redeposit,GSM9721743,val,hesrt,samples/GSE222322/GSM6919911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6919912,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L5/S1),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor47,Donor47,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4058,36601,counts,pixel,3.904861158031925,platform_constant,True,H&E,3.904861158031925,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-577b1aad8c1f,cross_gse_redeposit,GSM9721744,val,hesrt,samples/GSE222322/GSM6919912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM6919913,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3114,36601,counts,pixel,3.914409807429141,platform_constant,True,H&E,3.914409807429141,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-fa4422e0fb1f,cross_gse_redeposit,GSM9721745,val,hesrt,samples/GSE222322/GSM6919913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6919914,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3054,36601,counts,pixel,3.919965370837748,platform_constant,True,H&E,3.919965370837748,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-039251b09952,cross_gse_redeposit,GSM9721746,val,hesrt,samples/GSE222322/GSM6919914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM6919912,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L5/S1),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor47,Donor47,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4058,36601,counts,pixel,3.9048611580319252,platform_constant,True,H&E,3.9048611580319252,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-577b1aad8c1f,cross_gse_redeposit,GSM9721744,val,hesrt,samples/GSE222322/GSM6919912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM6919913,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3114,36601,counts,pixel,3.9144098074291405,platform_constant,True,H&E,3.9144098074291405,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-fa4422e0fb1f,cross_gse_redeposit,GSM9721745,val,hesrt,samples/GSE222322/GSM6919913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6919914,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3054,36601,counts,pixel,3.9199653708377475,platform_constant,True,H&E,3.9199653708377475,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-039251b09952,cross_gse_redeposit,GSM9721746,val,hesrt,samples/GSE222322/GSM6919914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6919915,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L5/S1),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor47,Donor47,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4542,36601,counts,pixel,3.898958119787397,platform_constant,True,H&E,3.898958119787397,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-c950f3260c3b,cross_gse_redeposit,GSM9721747,val,hesrt,samples/GSE222322/GSM6919915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6919916,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L5/S1),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor47,Donor47,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4728,36601,counts,pixel,3.904861158031925,platform_constant,True,H&E,3.904861158031925,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-391ee27e97b5,cross_gse_redeposit,GSM9721748,val,hesrt,samples/GSE222322/GSM6919916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6919917,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor45,Donor45,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4966,36601,counts,pixel,3.9112848747916575,platform_constant,True,H&E,3.9112848747916575,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-de2a0aa72219,cross_gse_redeposit,GSM9721749,val,hesrt,samples/GSE222322/GSM6919917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM6919918,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor45,Donor45,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4844,36601,counts,pixel,3.921701356279944,platform_constant,True,H&E,3.921701356279944,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-b785e5283726,cross_gse_redeposit,GSM9721750,val,hesrt,samples/GSE222322/GSM6919918,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6919916,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L5/S1),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor47,Donor47,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4728,36601,counts,pixel,3.9048611580319252,platform_constant,True,H&E,3.9048611580319252,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-391ee27e97b5,cross_gse_redeposit,GSM9721748,val,hesrt,samples/GSE222322/GSM6919916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6919917,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor45,Donor45,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4966,36601,counts,pixel,3.9112848747916584,platform_constant,True,H&E,3.9112848747916584,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-de2a0aa72219,cross_gse_redeposit,GSM9721749,val,hesrt,samples/GSE222322/GSM6919917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM6919918,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor45,Donor45,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4844,36601,counts,pixel,3.9217013562799443,platform_constant,True,H&E,3.9217013562799443,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-b785e5283726,cross_gse_redeposit,GSM9721750,val,hesrt,samples/GSE222322/GSM6919918,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6919919,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor45,Donor45,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4768,36601,counts,pixel,3.892013646533197,platform_constant,True,H&E,3.892013646533197,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-0e3e5365de3d,cross_gse_redeposit,GSM9721751,val,hesrt,samples/GSE222322/GSM6919919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6919920,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor45,Donor45,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4642,36601,counts,pixel,3.905034582392694,platform_constant,True,H&E,3.905034582392694,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-475dce7d54b2,cross_gse_redeposit,GSM9721752,val,hesrt,samples/GSE222322/GSM6919920,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6919921,GSE222322,GSE222322,Spatial transcriptomics on human lumbar spinal cord,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord (L3/L4),primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,GSE222322:Donor43,Donor43,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3200,36601,counts,pixel,3.9024512318765217,platform_constant,True,H&E,3.9024512318765217,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36731429,,CG-db5acdd9bfd0,cross_gse_redeposit,GSM9721753,val,hesrt,samples/GSE222322/GSM6919921,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -2070,7 +2070,7 @@ GSM6922997,GSE222410,GSE222410,Spatial transcriptomics reveals unique gene expre GSM6922998,GSE222410,GSE222410,Spatial transcriptomics reveals unique gene expression changes in different brain regions after sleep deprivation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,sleep deprived,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2634,32285,counts,pixel,4.071990700297742,platform_constant,True,H&E,4.071990700297742,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37925446,,GSM6922998,,,train,hesrt,samples/GSE222410/GSM6922998,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6937699,GSE222981,GSE222981,Moxibustion Improves Hypothalamus Aqp4 Polarization in APP/PS1 Mice: Evidence from Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2903,31053,counts,pixel,0.273224043715847,platform_constant,True,H&E,0.5000107993693169,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36819717,10.3389/fnagi.2023.1069155,GSM6937699,,,train,hesrt,samples/GSE222981/GSM6937699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6937700,GSE222981,GSE222981,Moxibustion Improves Hypothalamus Aqp4 Polarization in APP/PS1 Mice: Evidence from Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP/PS1,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3023,31053,counts,pixel,0.273224043715847,platform_constant,True,H&E,0.4999972070120755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36819717,10.3389/fnagi.2023.1069155,GSM6937700,,,train,hesrt,samples/GSE222981/GSM6937700,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM6937701,GSE222981,GSE222981,Moxibustion Improves Hypothalamus Aqp4 Polarization in APP/PS1 Mice: Evidence from Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP/PS1+MOX,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2962,31053,counts,pixel,0.273224043715847,platform_constant,True,H&E,0.4999965718438681,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36819717,10.3389/fnagi.2023.1069155,GSM6937701,,,train,hesrt,samples/GSE222981/GSM6937701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM6937701,GSE222981,GSE222981,Moxibustion Improves Hypothalamus Aqp4 Polarization in APP/PS1 Mice: Evidence from Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP/PS1+MOX,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2962,31053,counts,pixel,0.273224043715847,platform_constant,True,H&E,0.49999657184386814,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36819717,10.3389/fnagi.2023.1069155,GSM6937701,,,train,hesrt,samples/GSE222981/GSM6937701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM6938326,GSE223020,GSE223020,Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Cerebral organoid,organoid,,,normal,luna,,Cerebral organoid differentiation,not stated,luna,not stated,4 months,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial transcriptomics,,,spot,308,28349,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,37751695,,GSM6938326,,,train,sda-all,samples/GSE223020/GSM6938326,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM6938327,GSE223020,GSE223020,Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Cerebral organoid,organoid,,,normal,luna,,Cerebral organoid differentiation,not stated,luna,not stated,4 months,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial transcriptomics,,,spot,369,29082,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,37751695,,GSM6938327,,,train,sda-all,samples/GSE223020/GSM6938327,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.88, ""life_stage"": 1.0}",, GSM6938328,GSE223020,GSE223020,Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Cerebral organoid,organoid,,,normal,luna,,Cerebral organoid differentiation,not stated,luna,not stated,4 months,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial transcriptomics,,,spot,443,25763,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,37751695,,GSM6938328,,,train,sda-all,samples/GSE223020/GSM6938328,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.92, ""life_stage"": 1.0}",, @@ -2109,14 +2109,14 @@ GSM6957689,GSE223501+GSE223503,GSE223501,Non-small Cell Lung Cancer Brain Metast GSM6963115,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,APAP liver explant,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2650,33538,counts,pixel,0.8849557522123894,platform_constant,True,H&E,0.8849557522123894,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963115,,,train,hesrt,samples/GSE223559/GSM6963115,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM6963116,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,APAP liver explant,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2910,33538,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963116,,,train,hesrt,samples/GSE223559/GSM6963116,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM6963117,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,APAP liver explant,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1776,33538,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963117,,,train,hesrt,samples/GSE223559/GSM6963117,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM6963119,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Healthy liver explant,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1969,33538,counts,pixel,0.9090909090909092,platform_constant,True,H&E,0.9090909090909092,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963119,,,train,hesrt,samples/GSE223559/GSM6963119,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6963119,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Healthy liver explant,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1969,33538,counts,pixel,0.9090909090909091,platform_constant,True,H&E,0.9090909090909091,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963119,,,train,hesrt,samples/GSE223559/GSM6963119,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6963120,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Healthy liver explant,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4350,33538,counts,pixel,0.8771592358278378,platform_constant,True,H&E,0.8771592358278378,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963120,,,train,hesrt,samples/GSE223559/GSM6963120,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6963121,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Healthy liver explant,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2618,33538,counts,pixel,0.8771592358278378,platform_constant,True,H&E,0.8771592358278378,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963121,,,train,hesrt,samples/GSE223559/GSM6963121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM6963122,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,NonAE liver explant,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2462,33538,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963122,,,train,hesrt,samples/GSE223559/GSM6963122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6963123,GSE223559,GSE223559,Multimodal decoding of human liver regeneration [st_human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,NonAE liver explant,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3645,33538,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963123,,,train,hesrt,samples/GSE223559/GSM6963123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.16, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6963514,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Uninjured,0h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1951,31053,counts,pixel,0.8849211017394925,platform_constant,True,H&E,0.8849211017394925,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963514,,,test,hesrt,samples/GSE223560/GSM6963514,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM6963515,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Uninjured,0h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2730,31053,counts,pixel,0.8849211017394925,platform_constant,True,H&E,0.8849211017394925,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963515,,,test,hesrt,samples/GSE223560/GSM6963515,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM6963517,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Uninjured,0h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2432,31053,counts,pixel,0.9266809891468584,platform_constant,True,H&E,0.9266809891468584,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963517,,,test,hesrt,samples/GSE223560/GSM6963517,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM6963517,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Uninjured,0h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2432,31053,counts,pixel,0.9266809891468585,platform_constant,True,H&E,0.9266809891468585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963517,,,test,hesrt,samples/GSE223560/GSM6963517,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM6963518,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154,liver disorder,disease,mondo_predicate (Luna: perturbation),POD,24h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2521,31053,counts,pixel,0.8622612271184538,platform_constant,True,H&E,0.8622612271184538,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963518,,,test,hesrt,samples/GSE223560/GSM6963518,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6963519,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154,liver disorder,disease,mondo_predicate (Luna: perturbation),POD,24h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1649,31053,counts,pixel,0.847457627118644,platform_constant,True,H&E,0.847457627118644,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963519,,,test,hesrt,samples/GSE223560/GSM6963519,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6963520,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154,liver disorder,disease,mondo_predicate (Luna: perturbation),POD,36h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1971,31053,counts,pixel,0.8333043996551018,platform_constant,True,H&E,0.8333043996551018,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963520,,,test,hesrt,samples/GSE223560/GSM6963520,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -2126,12 +2126,12 @@ GSM6963524,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [ GSM6963525,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154,liver disorder,disease,mondo_predicate (Luna: perturbation),POD,48h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2632,31053,counts,pixel,0.869532343443978,platform_constant,True,H&E,0.869532343443978,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963525,,,test,hesrt,samples/GSE223560/GSM6963525,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM6963526,GSE223560,GSE223560,Multimodal decoding of human liver regeneration [st_mouse],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154,liver disorder,disease,mondo_predicate (Luna: perturbation),POD,48h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2432,31053,counts,pixel,0.8771592358278378,platform_constant,True,H&E,0.8771592358278378,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38693268,10.1038/s41586-024-07376-2,GSM6963526,,,test,hesrt,samples/GSE223560/GSM6963526,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM6996258,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,Tibialis Anterior (TA),primary tissue,,,perturbation,luna,,CTX muscle injury,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,770,32285,counts,um,1.0,verified,True,H&E-like (heuristic),5.083738577202159,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,other,one tissue region has no spots; spots that exist are aligned,39190487,,GSM6996258,,,train,sda-all,samples/GSE223813/GSM6996258,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM6996259,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,Tibialis Anterior (TA),primary tissue,,,perturbation,luna,,CTX muscle injury,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1273,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.975431695224551,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39190487,,GSM6996259,,,train,sda-all,samples/GSE223813/GSM6996259,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM6996259,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,Tibialis Anterior (TA),primary tissue,,,perturbation,luna,,CTX muscle injury,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1273,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9754316952245508,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39190487,,GSM6996259,,,train,sda-all,samples/GSE223813/GSM6996259,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6996260,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001385,tibialis anterior,Tibialis Anterior (TA),primary tissue,,,perturbation,luna,,CTX muscle injury,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1567,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.98248728954654,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39190487,,GSM6996260,,,train,sda-all,samples/GSE223813/GSM6996260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM6996261,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius muscle (GAST),primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,vehicle,adult,age rule: age with unit,juvenile,2 month old,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,856,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.634693311657189,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),,39190487,,GSM6996261,,,train,sda-all,samples/GSE223813/GSM6996261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.84}",, GSM6996262,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius muscle (GAST),primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,vehicle,adult,age rule: age with unit,juvenile,2 month old,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,653,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.524590407932672,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,stain too faint / in_tissue drawn by hand,"poor, dark staining; registration is correct",39190487,,GSM6996262,,,train,sda-all,samples/GSE223813/GSM6996262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.93}",, GSM6996263,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius muscle (GAST),primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,prednisone,adult,age rule: age with unit,juvenile,2 month old,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1589,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9700956430369816,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39190487,,GSM6996263,,,train,sda-all,samples/GSE223813/GSM6996263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.79}",, -GSM6996264,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius muscle (GAST),primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,prednisone,adult,age rule: age with unit,juvenile,2 month old,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,814,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9900038725014095,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39190487,,GSM6996264,,,train,sda-all,samples/GSE223813/GSM6996264,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.91}",, +GSM6996264,GSE223813,GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius muscle (GAST),primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,prednisone,adult,age rule: age with unit,juvenile,2 month old,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,814,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9900038725014104,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39190487,,GSM6996264,,,train,sda-all,samples/GSE223813/GSM6996264,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.91}",, GSM7017457,GSE224210,GSE224210,Single cell and spatial transcriptomic profile of whole CLAD and donor control lung tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,chronic lung allograft dysfunction,CLAD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2630,36601,counts,pixel,0.7352742413412813,platform_constant,True,H&E,0.7352742413412813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36946463,,GSM7017457,,,train,hesrt,samples/GSE224210/GSM7017457,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7017458,GSE224210,GSE224210,Single cell and spatial transcriptomic profile of whole CLAD and donor control lung tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,chronic lung allograft dysfunction,CLAD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2395,36601,counts,pixel,0.7352742413412813,platform_constant,True,H&E,0.7352742413412813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36946463,,GSM7017458,,,train,hesrt,samples/GSE224210/GSM7017458,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7017459,GSE224210,GSE224210,Single cell and spatial transcriptomic profile of whole CLAD and donor control lung tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,chronic lung allograft dysfunction,CLAD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2524,36601,counts,pixel,0.7352742413412813,platform_constant,True,H&E,0.7352742413412813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36946463,,GSM7017459,,,train,hesrt,samples/GSE224210/GSM7017459,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2143,12 +2143,12 @@ GSM7020544,GSE224360,GSE224360,PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM C GSM7020545,GSE224360,GSE224360,PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Virgin,adult,age rule: age with unit,adult,4 months,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2369,32285,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.838073450070576,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,37995223,,GSM7020545,,,train,sda-all,samples/GSE224360/GSM7020545,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7020546,GSE224360,GSE224360,PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Peri-weaning,adult,age rule: age with unit,adult,4 months,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2648,32285,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.846463807285455,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,37995223,,GSM7020546,,,train,sda-all,samples/GSE224360/GSM7020546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM7021870,GSE224411,GSE224411,Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,HCC,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,cabozantinib+nivolumab,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3006,36601,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37080163;37591207,,CG-3a37787710c1,cross_gse_redeposit,GSM7661255,test,hesrt,samples/GSE224411/GSM7021870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7021871,GSE224411,GSE224411,Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PanIN,tumour tissue,MONDO:0005070,neoplasm,disease,luna,pancreatic intraepithelial neoplasia,naïve,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1872,17943,counts,pixel,0.910975037348554,platform_constant,True,H&E,0.910975037348554,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37080163;37591207,,CG-4cfe023cac15,cross_gse_redeposit,GSM8058247,test,hesrt,samples/GSE224411/GSM7021871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7021871,GSE224411,GSE224411,Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PanIN,tumour tissue,MONDO:0005070,neoplasm,disease,luna,pancreatic intraepithelial neoplasia,naïve,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1872,17943,counts,pixel,0.9109750373485539,platform_constant,True,H&E,0.9109750373485539,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37080163;37591207,,CG-4cfe023cac15,cross_gse_redeposit,GSM8058247,test,hesrt,samples/GSE224411/GSM7021871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7021872,GSE224411,GSE224411,Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,PDAClymphnode,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,GVAX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1351,36601,counts,pixel,2.0,platform_constant,True,H&E,2.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37080163;37591207,,CG-668d5271dc68,cross_gse_redeposit,GSM8514556,test,hesrt,samples/GSE224411/GSM7021872,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.8, ""disease_status"": 0.96, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7024964,GSE224477+GSE224478,GSE224477,ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211,brain neoplasm,disease,luna,ETMR,,adult,age rule: bare number read as years,adult,28,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,848,17943,counts,pixel,4.087409558325102,platform_constant,True,H&E,4.087409558325102,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40562749,,GSM7024964,,,test,hesrt,samples/GSE224477/GSM7024964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7024965,GSE224477+GSE224478,GSE224477,ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211,brain neoplasm,disease,luna,ETMR,,adult,age rule: bare number read as years,adult,48,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3814,17943,counts,pixel,4.079077077888968,platform_constant,True,H&E,4.079077077888968,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40562749,,GSM7024965,,,test,hesrt,samples/GSE224477/GSM7024965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7024966,GSE224477+GSE224478,GSE224477,ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211,brain neoplasm,disease,luna,ETMR,,juvenile,age rule: bare number read as years,juvenile,12,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2668,17943,counts,pixel,4.061430328139184,platform_constant,True,H&E,4.061430328139184,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40562749,,GSM7024966,,,test,hesrt,samples/GSE224477/GSM7024966,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM7049132,GSE225475,GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,healthy,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1340,33538,counts,um,1.0,verified,True,H&E,3.926023780923504,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37308489,,GSM7049132,,,val,sda-all,samples/GSE225475/GSM7049132,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM7049132,GSE225475,GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,healthy,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1340,33538,counts,um,1.0,verified,True,H&E,3.9260237809235035,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37308489,,GSM7049132,,,val,sda-all,samples/GSE225475/GSM7049132,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7049133,GSE225475,GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,healthy,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,904,33538,counts,um,1.0,verified,True,H&E,3.9623764012166793,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37308489,,GSM7049133,,,val,sda-all,samples/GSE225475/GSM7049133,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7049134,GSE225475,GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005083,psoriasis,disease,luna,psoriasis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1352,33538,counts,um,1.0,verified,True,H&E,3.91581316467385,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37308489,,GSM7049134,,,val,sda-all,samples/GSE225475/GSM7049134,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.58, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7049135,GSE225475,GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005083,psoriasis,disease,luna,psoriasis,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1393,33538,counts,um,1.0,verified,True,H&E,4.838102889283527,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37308489,,GSM7049135,,,val,sda-all,samples/GSE225475/GSM7049135,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.87, ""life_stage"": 1.0}",, @@ -2160,12 +2160,12 @@ GSM7054272,GSE225690+GSE225691,GSE225690,Netrin-1 blockade induces tumor growth GSM7054273,GSE225690+GSE225691,GSE225690,Netrin-1 blockade induces tumor growth inhibition and EMT reversion in endometrial cancer [visium data],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,metastasis biopsies,metastasis,MONDO:0011962,endometrial cancer,disease,luna,endometrial carcinoma,After one month of treatment,not stated,luna,not stated,,unknown,,GSE225690:01-039,01-039,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2141,17943,counts,pixel,3.957894838164209,platform_constant,True,H&E,3.957894838164209,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37532934,,GSM7054273,,,train,hesrt,samples/GSE225690/GSM7054273,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM7055901,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,,,normal,luna,,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1493,31053,counts,pixel,4.259523561513061,platform_constant,True,H&E,4.259523561513061,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055901,,,test,hesrt,samples/GSE225766/GSM7055901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7055902,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,,,normal,luna,,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1438,31053,counts,pixel,4.258163241396546,platform_constant,True,H&E,4.258163241396546,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055902,,,test,hesrt,samples/GSE225766/GSM7055902,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7055903,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1064,31053,counts,pixel,4.257822897370684,platform_constant,True,H&E,4.257822897370684,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055903,,,test,hesrt,samples/GSE225766/GSM7055903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7055903,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1064,31053,counts,pixel,4.2578228973706835,platform_constant,True,H&E,4.2578228973706835,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055903,,,test,hesrt,samples/GSE225766/GSM7055903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7055904,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,959,31053,counts,pixel,4.254421648817894,platform_constant,True,H&E,4.254421648817894,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055904,,,test,hesrt,samples/GSE225766/GSM7055904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7055905,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,,,normal,luna,,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1497,31053,counts,pixel,4.277171377374568,platform_constant,True,H&E,4.277171377374568,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055905,,,test,hesrt,samples/GSE225766/GSM7055905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7055906,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,826,31053,counts,pixel,4.258421739868129,platform_constant,True,H&E,4.258421739868129,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055906,,,test,hesrt,samples/GSE225766/GSM7055906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7055907,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1155,31053,counts,pixel,4.260448811738785,platform_constant,True,H&E,4.260448811738785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055907,,,test,hesrt,samples/GSE225766/GSM7055907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7055908,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1136,31053,counts,pixel,4.258252448056108,platform_constant,True,H&E,4.258252448056108,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055908,,,test,hesrt,samples/GSE225766/GSM7055908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7055908,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,MDX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1136,31053,counts,pixel,4.2582524480561075,platform_constant,True,H&E,4.2582524480561075,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7055908,,,test,hesrt,samples/GSE225766/GSM7055908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7230943,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,,,perturbation,luna,,cardiotoxin,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2516,31053,counts,um,1.0,verified,False,,,WITHHELD,ABSENT,ABSENT,hesrt_review_fail,,VERIFIED,PASS,,,37410813,,GSM7230943,,,test,sda-all,samples/GSE225766/GSM7230943,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7230944,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,,,perturbation,luna,,WT Day3 PostInjury cardiotoxin,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1854,31053,counts,pixel,4.171629121686752,platform_constant,True,H&E,4.171629121686752,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7230944,,,test,hesrt,samples/GSE225766/GSM7230944,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7230945,GSE225766,GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001388,gastrocnemius,Gastrocnemius,primary tissue,,,perturbation,luna,,WT Day5 PostInjury cardiotoxin,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2285,31053,counts,pixel,4.164466619102457,platform_constant,True,H&E,4.164466619102457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37410813,,GSM7230945,,,test,hesrt,samples/GSE225766/GSM7230945,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -2174,10 +2174,10 @@ GSM7058757,GSE225857,GSE225857,Single-cell and spatial transcriptome analysis re GSM7058758,GSE225857,GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colorectal tissue,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,primary tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3417,17943,counts,pixel,3.868939749552994,platform_constant,True,H&E,3.868939749552994,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37327339,10.1126/sciadv.adf5464,GSM7058758,,,train,hesrt,samples/GSE225857/GSM7058758,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.8, ""life_stage"": 1.0}",, GSM7058759,GSE225857,GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colorectal tissue,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,primary tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4016,17943,counts,pixel,3.919142220869314,platform_constant,True,H&E,3.919142220869314,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37327339,10.1126/sciadv.adf5464,GSM7058759,,,train,hesrt,samples/GSE225857/GSM7058759,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM7058760,GSE225857,GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver tissue,metastasis,MONDO:0005575;MONDO:0024883,colorectal cancer;metastatic neoplasm,disease,luna,colorectal cancer,liver metastatic tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4672,17943,counts,pixel,3.911818904165685,platform_constant,True,H&E,3.911818904165685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37327339,10.1126/sciadv.adf5464,GSM7058760,,,train,hesrt,samples/GSE225857/GSM7058760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM7058761,GSE225857,GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver tissue,metastasis,MONDO:0005575;MONDO:0024883,colorectal cancer;metastatic neoplasm,disease,luna,colorectal cancer,liver metastatic tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4796,17943,counts,pixel,3.961060632902487,platform_constant,True,H&E,3.961060632902487,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37327339,10.1126/sciadv.adf5464,GSM7058761,,,train,hesrt,samples/GSE225857/GSM7058761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, +GSM7058761,GSE225857,GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver tissue,metastasis,MONDO:0005575;MONDO:0024883,colorectal cancer;metastatic neoplasm,disease,luna,colorectal cancer,liver metastatic tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4796,17943,counts,pixel,3.9610606329024867,platform_constant,True,H&E,3.9610606329024867,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37327339,10.1126/sciadv.adf5464,GSM7058761,,,train,hesrt,samples/GSE225857/GSM7058761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, GSM7063747,GSE226097,GSE226097,A Single-Nucleus Atlas of Seed-to-Seed Development in Arabidopsis,Arabidopsis thaliana,3702,thale cress,Arabidopsis thaliana,3702,,False,False,GEO organism field,Arabidopsis thaliana,,plant,luna,,,Germinating seeds,primary tissue,,,normal,luna,,,not stated,luna,not stated,1.25-days-old,unknown,,,,,,Slide-seq,release v3,Slide-seq,sequencing-based,slide-seq,,,bead,55290,19502,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,40830271,,GSM7063747,,,test,sda-all,samples/GSE226097/GSM7063747,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 0.21}",life_stage,low_confidence_annotation GSM7068162,GSE226208+GSE226211,GSE226208,"Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,w/o treatment,adult,age rule: age with unit,adult,8-12 weeks old,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1991,27998,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.950544419410055,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,38570482;39179527,,GSM7068162,,,train,sda-all,samples/GSE226208/GSM7068162,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7068163,GSE226208+GSE226211,GSE226208,"Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0044745,nervous system injury,disease,mondo_predicate (Luna: perturbation),,2days DMSO,adult,age rule: age with unit,adult,8-12 weeks old,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1740,27998,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9543550332093536,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,38570482;39179527,,GSM7068163,,,train,sda-all,samples/GSE226208/GSM7068163,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7068163,GSE226208+GSE226211,GSE226208,"Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0044745,nervous system injury,disease,mondo_predicate (Luna: perturbation),,2days DMSO,adult,age rule: age with unit,adult,8-12 weeks old,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1740,27998,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9543550332093544,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,38570482;39179527,,GSM7068163,,,train,sda-all,samples/GSE226208/GSM7068163,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7979963,GSE226430,GSE226430,Spatiotemporal understanding of healthy and disordered early pregnancy governed by immune-featured stromal cells,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,uterus,luna,UBERON:0001295,endometrium,Endometrium,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,20472,23427,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,37699390,,GSM7979963,,,train,sda-all,samples/GSE226430/GSM7979963,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7979964,GSE226430,GSE226430,Spatiotemporal understanding of healthy and disordered early pregnancy governed by immune-featured stromal cells,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,uterus,luna,UBERON:0001295,endometrium,Endometrium,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,22355,23330,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,37699390,,GSM7979964,,,train,sda-all,samples/GSE226430/GSM7979964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7979965,GSE226430,GSE226430,Spatiotemporal understanding of healthy and disordered early pregnancy governed by immune-featured stromal cells,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,uterus,luna,UBERON:0001295,endometrium,Endometrium,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,26212,23373,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,37699390,,GSM7979965,,,train,sda-all,samples/GSE226430/GSM7979965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -2201,17 +2201,17 @@ GSM7267869,GSE226760,GSE226760,The Triptryium wilfordii derivative celastrol has GSM7267870,GSE226760,GSE226760,The Triptryium wilfordii derivative celastrol has anti-fibrotic effects in systemic sclerosis [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,mondo_predicate (Luna: perturbation),,Celastrol,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,624,19465,counts,pixel,4.276037737834728,platform_constant,True,H&E,4.276037737834728,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37328193,,GSM7267870,,,train,hesrt,samples/GSE226760/GSM7267870,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.42, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM7089855,GSE226997,GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Human colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,Primary colorectal cancer,Primary colorectal cancer,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4148,17944,counts,pixel,4.026068950839756,platform_constant,True,H&E,4.026068950839756,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38446659,,GSM7089855,,,train,hesrt,samples/GSE226997/GSM7089855,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",, GSM7089856,GSE226997,GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Human colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,Primary colorectal cancer,Primary colorectal cancer,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3737,17944,counts,pixel,4.071724246666997,platform_constant,True,H&E,4.071724246666997,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38446659,,GSM7089856,,,train,hesrt,samples/GSE226997/GSM7089856,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM7089857,GSE226997,GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Human colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,Primary colorectal cancer,Primary colorectal cancer,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4676,19144,counts,pixel,4.049027648761975,platform_constant,True,H&E,4.049027648761975,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38446659,,GSM7089857,,,train,hesrt,samples/GSE226997/GSM7089857,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM7089857,GSE226997,GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Human colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,Primary colorectal cancer,Primary colorectal cancer,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4676,19144,counts,pixel,4.0490276487619745,platform_constant,True,H&E,4.0490276487619745,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38446659,,GSM7089857,,,train,hesrt,samples/GSE226997/GSM7089857,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM7089858,GSE226997,GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Human colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,Primary colorectal cancer,Primary colorectal cancer,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3535,17944,counts,pixel,4.016002226104998,platform_constant,True,H&E,4.016002226104998,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38446659,,GSM7089858,,,train,hesrt,samples/GSE226997/GSM7089858,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM7090083,GSE227019,GSE227019,Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,Ovarian cancer,,not stated,luna,not stated,,unknown,,GSE227019:1,1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2770,17943,counts,pixel,4.1388924126463404,platform_constant,True,H&E,4.1388924126463404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36882687,,SS-GSM7090083,same_section_within_series,GSM7090086,test,hesrt,samples/GSE227019/GSM7090083,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.48, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7090084,GSE227019,GSE227019,Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,Ovarian cancer,,not stated,luna,not stated,,unknown,,GSE227019:2,2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2558,17943,counts,pixel,4.004723189697145,platform_constant,True,H&E,4.004723189697145,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36882687,,SS-GSM7090084,same_section_within_series,GSM7090087,test,hesrt,samples/GSE227019/GSM7090084,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.65, ""life_stage"": 1.0}",, GSM7090085,GSE227019,GSE227019,Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,Ovarian cancer,,not stated,luna,not stated,,unknown,,GSE227019:3,3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1979,17943,counts,pixel,3.9759794277506737,platform_constant,True,H&E,3.9759794277506737,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36882687,,SS-GSM7090085,same_section_within_series,GSM7090088,test,hesrt,samples/GSE227019/GSM7090085,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.68, ""life_stage"": 1.0}",, -GSM7090410,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana / in situ sequencing),sequencing-based,ISS by Cartana,,,cell,85445,193,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090410,,,train,sda-all,samples/GSE227046/GSM7090410,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7090411,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana / in situ sequencing),sequencing-based,ISS by Cartana,,,cell,121326,196,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090411,,,train,sda-all,samples/GSE227046/GSM7090411,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7090412,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana / in situ sequencing),sequencing-based,ISS by Cartana,,,cell,99515,194,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090412,,,train,sda-all,samples/GSE227046/GSM7090412,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7090413,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana / in situ sequencing),sequencing-based,ISS by Cartana,,,cell,106695,195,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090413,,,train,sda-all,samples/GSE227046/GSM7090413,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM7090414,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana / in situ sequencing),sequencing-based,ISS by Cartana,,,cell,127634,195,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090414,,,train,sda-all,samples/GSE227046/GSM7090414,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation -GSM7090415,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,C57BL/6,not stated,luna,not stated,,female,female,,,,,Other,release v3,ISS (Cartana / in situ sequencing),sequencing-based,ISS by Cartana,,,cell,94869,194,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090415,,,train,sda-all,samples/GSE227046/GSM7090415,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM7090410,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana),imaging-based,ISS by Cartana,,,cell,85445,193,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090410,,,train,sda-all,samples/GSE227046/GSM7090410,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7090411,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana),imaging-based,ISS by Cartana,,,cell,121326,196,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090411,,,train,sda-all,samples/GSE227046/GSM7090411,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7090412,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana),imaging-based,ISS by Cartana,,,cell,99515,194,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090412,,,train,sda-all,samples/GSE227046/GSM7090412,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7090413,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana),imaging-based,ISS by Cartana,,,cell,106695,195,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090413,,,train,sda-all,samples/GSE227046/GSM7090413,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM7090414,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,C57BL/6,not stated,luna,not stated,,male,male,,,,,Other,release v3,ISS (Cartana),imaging-based,ISS by Cartana,,,cell,127634,195,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090414,,,train,sda-all,samples/GSE227046/GSM7090414,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation +GSM7090415,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,C57BL/6,not stated,luna,not stated,,female,female,,,,,Other,release v3,ISS (Cartana),imaging-based,ISS by Cartana,,,cell,94869,194,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,38360882,,GSM7090415,,,train,sda-all,samples/GSE227046/GSM7090415,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7090416,GSE227046,GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,sham,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1815,32285,counts,pixel,3.891970527368205,platform_constant,True,H&E,3.891970527368205,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38360882,,GSM7090416,,,train,hesrt,samples/GSE227046/GSM7090416,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7097913,GSE227332,GSE227332,The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,C57BL/6,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2830,19465,counts,pixel,5.576050413152669,platform_constant,True,H&E,5.576050413152669,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37948511,,GSM7097913,,,test,hesrt,samples/GSE227332/GSM7097913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7097914,GSE227332,GSE227332,The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,perturbation,luna,,Zfp148 fl/fl; Zfp281 fl/fl; Cd4-Cre+,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2447,19465,counts,pixel,6.473021612230517,platform_constant,True,H&E,6.473021612230517,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37948511,,GSM7097914,,,test,hesrt,samples/GSE227332/GSM7097914,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2228,7 +2228,7 @@ GSM7106691,GSE227742,GSE227742,Time-series spatial transcriptomic analysis of mu GSM7106692,GSE227742,GSE227742,Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,,,perturbation,luna,,"GW3965 diet, irradiated (3 dpi)",not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4881,32285,counts,pixel,4.141824546650327,platform_constant,True,H&E,4.141824546650327,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567700,,GSM7106692,,,train,hesrt,samples/GSE227742/GSM7106692,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM7106693,GSE227742,GSE227742,Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,,,normal,luna,,"Standard diet, non-irradiated (0 dpi) control",not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4190,32285,counts,pixel,4.148965623454898,platform_constant,True,H&E,4.148965623454898,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567700,,CG-523382deca4d,cross_gse_redeposit,GSM8258690,train,hesrt,samples/GSE227742/GSM7106693,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM7106694,GSE227742,GSE227742,Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,,,perturbation,luna,,"Standard diet, irradiated (3 dpi)",not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4859,32285,counts,pixel,4.148965623454898,platform_constant,True,H&E,4.148965623454898,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567700,,GSM7106694,,,train,hesrt,samples/GSE227742/GSM7106694,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM7113328,GSE228056,GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,tumour tissue,MONDO:0019462,splenic marginal zone lymphoma,disease,luna,SMZL,SMZL,adult,age rule: age in years,adult,59 years,male,male,GSE228056:SMZL1,SMZL1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,719,36601,counts,pixel,4.263200521050448,platform_constant,True,H&E,4.263200521050448,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38828498;40374674,,GSM7113328,,,train,hesrt,samples/GSE228056/GSM7113328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7113328,GSE228056,GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,tumour tissue,MONDO:0019462,splenic marginal zone lymphoma,disease,luna,SMZL,SMZL,adult,age rule: age in years,adult,59 years,male,male,GSE228056:SMZL1,SMZL1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,719,36601,counts,pixel,4.2632005210504476,platform_constant,True,H&E,4.2632005210504476,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38828498;40374674,,GSM7113328,,,train,hesrt,samples/GSE228056/GSM7113328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7113329,GSE228056,GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,tumour tissue,MONDO:0019462,splenic marginal zone lymphoma,disease,luna,SMZL,SMZL,aged,age rule: age in years,aged,75 years,male,male,GSE228056:SMZL2,SMZL2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1115,36601,counts,pixel,4.747947898172542,platform_constant,True,H&E,4.747947898172542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38828498;40374674,,GSM7113329,,,train,hesrt,samples/GSE228056/GSM7113329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7113330,GSE228056,GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,tumour tissue,MONDO:0019462,splenic marginal zone lymphoma,disease,luna,SMZL,SMZL,aged,age rule: age in years,aged,66 years,female,female,GSE228056:SMZL3,SMZL3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2798,36601,counts,pixel,4.747947898172542,platform_constant,True,H&E,4.747947898172542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38828498;40374674,,GSM7113330,,,train,hesrt,samples/GSE228056/GSM7113330,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.78}",, GSM7113331,GSE228056,GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,normal,luna,healthy control,healthy control,not stated,luna,not stated,,male,male,GSE228056:HD2,HD2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,806,36601,counts,pixel,4.747947898172529,platform_constant,True,H&E,4.747947898172529,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38828498;40374674,,GSM7113331,,,train,hesrt,samples/GSE228056/GSM7113331,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -2258,18 +2258,18 @@ GSM7119413,GSE228360,GSE228360,Spatial and single cell transcriptomics reveals c GSM7120222,GSE228394,GSE228394,Characterization of stress-susceptible cells and gene in mouse brain via Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: age with unit,adult,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3792,32285,counts,pixel,4.556740193177444,platform_constant,True,H&E,4.556740193177444,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38264685,,GSM7120222,,,train,hesrt,samples/GSE228394/GSM7120222,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM7120223,GSE228394,GSE228394,Characterization of stress-susceptible cells and gene in mouse brain via Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Resilient,adult,age rule: age with unit,adult,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3861,32285,counts,pixel,4.486225452424432,platform_constant,True,H&E,4.486225452424432,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38264685,,GSM7120223,,,train,hesrt,samples/GSE228394/GSM7120223,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM7120224,GSE228394,GSE228394,Characterization of stress-susceptible cells and gene in mouse brain via Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Susceptible,adult,age rule: age with unit,adult,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3790,32285,counts,pixel,4.556740193177444,platform_constant,True,H&E,4.556740193177444,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38264685,,GSM7120224,,,train,hesrt,samples/GSE228394/GSM7120224,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.2, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7123312,GSE228516,GSE228516,Aristolochic Acid Nephropathy 2 week time point of CD45+ cells,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007416;MONDO:0005300,Balkan nephropathy;chronic kidney disease,disease,luna,,AAN CKD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2116,32285,counts,pixel,4.385366059770743,platform_constant,True,H&E,4.385366059770743,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7123312,,,train,hesrt,samples/GSE228516/GSM7123312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7123312,GSE228516,GSE228516,Aristolochic Acid Nephropathy 2 week time point of CD45+ cells,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007416;MONDO:0005300,Balkan nephropathy;chronic kidney disease,disease,luna,,AAN CKD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2116,32285,counts,pixel,4.3853660597707425,platform_constant,True,H&E,4.3853660597707425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7123312,,,train,hesrt,samples/GSE228516/GSM7123312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7123558,GSE228534,GSE228534,Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000981,femur,Femur,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,10 week old,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1078,19691,counts,um,1.0,verified,True,H&E-like (heuristic),4.276215138758491,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37926705,,GSM7123558,,,test,sda-all,samples/GSE228534/GSM7123558,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7123559,GSE228534,GSE228534,Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000981,femur,Femur,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,10 week old,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1038,19691,counts,um,1.0,verified,True,H&E-like (heuristic),4.272131936008995,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37926705,,GSM7123559,,,test,sda-all,samples/GSE228534/GSM7123559,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7123560,GSE228534,GSE228534,Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000981,femur,Femur,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,10 week old,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1223,19586,counts,um,1.0,verified,True,H&E-like (heuristic),4.421998433645894,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37926705,,GSM7123560,,,test,sda-all,samples/GSE228534/GSM7123560,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7123561,GSE228534,GSE228534,Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0000981,femur,Femur,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,10 week old,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1193,19586,counts,um,1.0,verified,True,H&E-like (heuristic),4.420626813686164,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37926705,,GSM7123561,,,test,sda-all,samples/GSE228534/GSM7123561,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7134911,GSE228685,GSE228685,Spatial transcriptomics of adenoid cystic carcinoma of the lacrimal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0001817,lacrimal gland,Tumor section,tumour tissue,MONDO:0002463;MONDO:0004971,lacrimal gland carcinoma;adenoid cystic carcinoma,disease,luna,Adenoid cystic carcinoma of the lacrimal gland,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3584,17943,counts,pixel,1.010307195245044,platform_constant,True,H&E,1.010307195245044,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37370820,,GSM7134911,,,train,hesrt,samples/GSE228685/GSM7134911,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7146857,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,MONDO:0011849,psoriatic arthritis,disease,luna,psoriatic arthritis,psoriatic arthritis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1389,36601,counts,pixel,3.9428570621074095,platform_constant,True,H&E,3.9428570621074095,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146857,,,train,hesrt,samples/GSE228982/GSM7146857,sda-tissue-disease-2.5,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM7146858,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,MONDO:0011849,psoriatic arthritis,disease,luna,psoriatic arthritis,psoriatic arthritis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1368,36601,counts,pixel,3.9428570621074095,platform_constant,True,H&E,3.9428570621074095,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146858,,,train,hesrt,samples/GSE228982/GSM7146858,sda-tissue-disease-2.5,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM7146859,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,,,normal,luna,healthy,healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,927,36601,counts,pixel,3.9428570621074095,platform_constant,True,H&E,3.9428570621074095,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146859,,,train,hesrt,samples/GSE228982/GSM7146859,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM7146860,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,,,normal,luna,healthy,healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,899,36601,counts,pixel,3.9428570621074095,platform_constant,True,H&E,3.9428570621074095,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146860,,,train,hesrt,samples/GSE228982/GSM7146860,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM7146857,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,MONDO:0011849,psoriatic arthritis,disease,luna,psoriatic arthritis,psoriatic arthritis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1389,36601,counts,pixel,3.9428570621074104,platform_constant,True,H&E,3.9428570621074104,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146857,,,train,hesrt,samples/GSE228982/GSM7146857,sda-tissue-disease-2.5,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM7146858,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,MONDO:0011849,psoriatic arthritis,disease,luna,psoriatic arthritis,psoriatic arthritis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1368,36601,counts,pixel,3.9428570621074104,platform_constant,True,H&E,3.9428570621074104,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146858,,,train,hesrt,samples/GSE228982/GSM7146858,sda-tissue-disease-2.5,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM7146859,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,,,normal,luna,healthy,healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,927,36601,counts,pixel,3.9428570621074104,platform_constant,True,H&E,3.9428570621074104,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146859,,,train,hesrt,samples/GSE228982/GSM7146859,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM7146860,GSE228982,GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0002217,synovial joint,synovial joint,primary tissue,,,normal,luna,healthy,healthy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,899,36601,counts,pixel,3.9428570621074104,platform_constant,True,H&E,3.9428570621074104,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38396288,,GSM7146860,,,train,hesrt,samples/GSE228982/GSM7146860,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7156292,GSE229175,GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,Ciona intestinalis,7719,vase tunicate,Ciona intestinalis,7719,,False,False,GEO organism field,Ciona intestinalis,,brain,luna,,,neural complex,primary tissue,,,normal,luna,,WT,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,492,18788,counts,pixel,4.041316950226493,platform_constant,True,H&E,4.041316950226493,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40970208,,GSM7156292,,,train,hesrt,samples/GSE229175/GSM7156292,sda-tissue-disease-2.4,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.22, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation -GSM7156293,GSE229175,GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,Ciona intestinalis,7719,vase tunicate,Ciona intestinalis,7719,,False,False,GEO organism field,Ciona intestinalis,,brain,luna,UBERON:0001017,central nervous system,neural complex,primary tissue,,,normal,luna,,WT,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,424,18788,counts,pixel,4.285534362260711,platform_constant,True,H&E,4.285534362260711,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40970208,,GSM7156293,,,train,hesrt,samples/GSE229175/GSM7156293,sda-tissue-disease-2.4,"{""organ"": 0.61, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM7156293,GSE229175,GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,Ciona intestinalis,7719,vase tunicate,Ciona intestinalis,7719,,False,False,GEO organism field,Ciona intestinalis,,brain,luna,UBERON:0001017,central nervous system,neural complex,primary tissue,,,normal,luna,,WT,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,424,18788,counts,pixel,4.2855343622607105,platform_constant,True,H&E,4.2855343622607105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40970208,,GSM7156293,,,train,hesrt,samples/GSE229175/GSM7156293,sda-tissue-disease-2.4,"{""organ"": 0.61, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7156294,GSE229175,GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,Ciona intestinalis,7719,vase tunicate,Ciona intestinalis,7719,,False,False,GEO organism field,Ciona intestinalis,,brain,luna,UBERON:0001017,central nervous system,neural complex,primary tissue,,,normal,luna,,WT,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,446,18788,counts,pixel,4.318580697036812,platform_constant,True,H&E,4.318580697036812,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40970208,,GSM7156294,,,train,hesrt,samples/GSE229175/GSM7156294,sda-tissue-disease-2.4,"{""organ"": 0.62, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7156295,GSE229175,GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,Ciona intestinalis,7719,vase tunicate,Ciona intestinalis,7719,,False,False,GEO organism field,Ciona intestinalis,,brain,luna,UBERON:0001017,central nervous system,neural complex,primary tissue,,,normal,luna,,WT,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,648,18788,counts,pixel,4.252557856758691,platform_constant,True,H&E,4.252557856758691,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40970208,,GSM7156295,,,train,hesrt,samples/GSE229175/GSM7156295,sda-tissue-disease-2.4,"{""organ"": 0.52, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation GSM7164655,GSE229508,GSE229508,Spatial transcriptome of developmental mouse brain reveals temporal dynamics of gene expressions and heterogeneity of the claustrum,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,forebrain,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,979,32285,counts,pixel,4.339849705475763,platform_constant,True,H&E,4.339849705475763,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40210990,,GSM7164655,,,train,hesrt,samples/GSE229508/GSM7164655,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2503,21 +2503,21 @@ GSM7441454,GSE234035+GSE234971,GSE234035,Single cell analyses reveal the transie GSM7441455,GSE234035+GSE234971,GSE234035,Single cell analyses reveal the transient emergence of retinal progenitor cells in the ciliary margin zone during human retinal development [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,13PCW,fetal,age rule: post-conception / gestational weeks,fetal,13 post-conception weeks,unknown,,GSE234035:14749,14749,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1183,33538,counts,pixel,4.668111309690189,platform_constant,True,H&E,4.668111309690189,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38670973,,GSM7441455,,,test,hesrt,samples/GSE234035/GSM7441455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7441456,GSE234035+GSE234971,GSE234035,Single cell analyses reveal the transient emergence of retinal progenitor cells in the ciliary margin zone during human retinal development [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,13PCW,fetal,age rule: post-conception / gestational weeks,fetal,13 post-conception weeks,unknown,,GSE234035:14749,14749,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1153,33538,counts,pixel,4.645410104500985,platform_constant,True,H&E,4.645410104500985,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38670973,,GSM7441456,,,test,hesrt,samples/GSE234035/GSM7441456,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.56, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7441457,GSE234035+GSE234971,GSE234035,Single cell analyses reveal the transient emergence of retinal progenitor cells in the ciliary margin zone during human retinal development [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,13PCW,fetal,age rule: post-conception / gestational weeks,fetal,13 post-conception weeks,unknown,,GSE234035:14749,14749,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1295,33538,counts,pixel,4.668111309690189,platform_constant,True,H&E,4.668111309690189,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38670973,,GSM7441457,,,test,hesrt,samples/GSE234035/GSM7441457,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.54, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM7449985,GSE234157+GSE234161,GSE234157,Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,unknown,luna,,,solid tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,Brachytherapy+Immune checkpoint inhibitors,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2733,32589,counts,pixel,4.649280820207991,platform_constant,True,H&E,4.649280820207991,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39292804,,GSM7449985,,,train,hesrt,samples/GSE234157/GSM7449985,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 0.96, ""disease_status"": 0.88, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM7449985,GSE234157+GSE234161,GSE234157,Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,unknown,luna,,,solid tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,Brachytherapy+Immune checkpoint inhibitors,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2733,32589,counts,pixel,4.6492808202079905,platform_constant,True,H&E,4.6492808202079905,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39292804,,GSM7449985,,,train,hesrt,samples/GSE234157/GSM7449985,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 0.96, ""disease_status"": 0.88, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM7454042,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,adult,age rule: age with unit,juvenile,7 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1254,32285,counts,pixel,4.0237701493718285,platform_constant,True,H&E,4.0237701493718285,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454042,,,val,hesrt,samples/GSE234199/GSM7454042,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7454043,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,adult,age rule: age with unit,juvenile,7 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1303,32285,counts,pixel,4.210922115772156,platform_constant,True,H&E,4.210922115772156,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454043,,,val,hesrt,samples/GSE234199/GSM7454043,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7454043,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,adult,age rule: age with unit,juvenile,7 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1303,32285,counts,pixel,4.2109221157721555,platform_constant,True,H&E,4.2109221157721555,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454043,,,val,hesrt,samples/GSE234199/GSM7454043,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7454044,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2400,32285,counts,pixel,4.113747197356425,platform_constant,True,H&E,4.113747197356425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454044,,,val,hesrt,samples/GSE234199/GSM7454044,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7454045,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1734,32285,counts,pixel,4.04896354734937,platform_constant,True,H&E,4.04896354734937,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454045,,,val,hesrt,samples/GSE234199/GSM7454045,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7454046,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,adult,age rule: age with unit,juvenile,7 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2135,32285,counts,pixel,4.055555596111121,platform_constant,True,H&E,4.055555596111121,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454046,,,val,hesrt,samples/GSE234199/GSM7454046,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7454047,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,adult,age rule: age with unit,juvenile,7 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1134,32285,counts,pixel,4.111111115222232,platform_constant,True,H&E,4.111111115222232,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454047,,,val,hesrt,samples/GSE234199/GSM7454047,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7454048,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2383,32285,counts,pixel,4.129629751866685,platform_constant,True,H&E,4.129629751866685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454048,,,val,hesrt,samples/GSE234199/GSM7454048,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7454049,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1449,32285,counts,pixel,4.185185148355576,platform_constant,True,H&E,4.185185148355576,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454049,,,val,hesrt,samples/GSE234199/GSM7454049,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7454049,GSE234199,GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Fibrotic lung slice,primary tissue,,,disease,luna,lung fibrosis,bleomycin,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1449,32285,counts,pixel,4.1851851483555755,platform_constant,True,H&E,4.1851851483555755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40769983,,GSM7454049,,,val,hesrt,samples/GSE234199/GSM7454049,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7458245,GSE234253,GSE234253,Spatial transcriptomics of mouse spleens during malaria convalescence.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0005136,malaria,disease,mondo_predicate,,,adult,age rule: age with unit,juvenile,6-12 weeks,unknown,,,,fresh frozen,Fresh frozen,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,43892,25412,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38944658,,GSM7458245,,,train,sda-all,samples/GSE234253/GSM7458245,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 0.58}",disease_status;life_stage,low_confidence_annotation GSM7458246,GSE234253,GSE234253,Spatial transcriptomics of mouse spleens during malaria convalescence.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0005136,malaria,disease,luna,,,adult,age rule: age with unit,juvenile,6-12 weeks,unknown,,,,fresh frozen,Fresh frozen,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,45130,26397,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38944658,,GSM7458246,,,train,sda-all,samples/GSE234253/GSM7458246,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 0.86}",disease_status,low_confidence_annotation GSM7458247,GSE234253,GSE234253,Spatial transcriptomics of mouse spleens during malaria convalescence.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0005136,malaria,disease,mondo_predicate,,,adult,age rule: age with unit,juvenile,6-12 weeks,unknown,,,,fresh frozen,Fresh frozen,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,51589,27553,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38944658,,GSM7458247,,,train,sda-all,samples/GSE234253/GSM7458247,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 0.6900000000000001}",disease_status,low_confidence_annotation GSM7458248,GSE234253,GSE234253,Spatial transcriptomics of mouse spleens during malaria convalescence.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0005136,malaria,disease,mondo_predicate,,,adult,age rule: age with unit,juvenile,6-12 weeks,unknown,,,,fresh frozen,Fresh frozen,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,45403,25856,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38944658,,GSM7458248,,,train,sda-all,samples/GSE234253/GSM7458248,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 0.87}",disease_status,low_confidence_annotation GSM7461403,GSE234266,GSE234266,Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0004992,cancer,disease,luna,skin squamous cell carcinoma,Control N/A,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1426,19465,counts,pixel,3.9828948272737175,platform_constant,True,H&E,3.9828948272737175,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37532929,,GSM7461403,,,train,hesrt,samples/GSE234266/GSM7461403,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.79, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM7461404,GSE234266,GSE234266,Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0004992,cancer,disease,luna,skin squamous cell carcinoma,NP137 In vivo IP,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1166,19465,counts,pixel,3.910389330405744,platform_constant,True,H&E,3.910389330405744,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37532929,,GSM7461404,,,train,hesrt,samples/GSE234266/GSM7461404,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.52, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM7461404,GSE234266,GSE234266,Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0004992,cancer,disease,luna,skin squamous cell carcinoma,NP137 In vivo IP,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1166,19465,counts,pixel,3.9103893304057444,platform_constant,True,H&E,3.9103893304057444,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37532929,,GSM7461404,,,train,hesrt,samples/GSE234266/GSM7461404,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.52, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7461435,GSE234271+GSE234272,GSE234271,Novel integrated multiomics analysis reveals Itgbl1-mediated regulation of fibrogenesis through antagonism of Tgfβ1 and IL1β signaling. (Spatial Gene Expression),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,wound,3 day,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,664,32285,counts,pixel,4.797367889857136,platform_constant,True,H&E,4.797367889857136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39558136,,GSM7461435,,,train,hesrt,samples/GSE234271/GSM7461435,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.54, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7461436,GSE234271+GSE234272,GSE234271,Novel integrated multiomics analysis reveals Itgbl1-mediated regulation of fibrogenesis through antagonism of Tgfβ1 and IL1β signaling. (Spatial Gene Expression),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,wound,7 day,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,549,32285,counts,pixel,4.363099562562214,platform_constant,True,H&E,4.363099562562214,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39558136,,GSM7461436,,,train,hesrt,samples/GSE234271/GSM7461436,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.65, ""life_stage"": 1.0}",, GSM7461437,GSE234271+GSE234272,GSE234271,Novel integrated multiomics analysis reveals Itgbl1-mediated regulation of fibrogenesis through antagonism of Tgfβ1 and IL1β signaling. (Spatial Gene Expression),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,wound,14 day,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,697,32285,counts,pixel,4.365048199829281,platform_constant,True,H&E,4.365048199829281,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39558136,,GSM7461437,,,train,hesrt,samples/GSE234271/GSM7461437,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.55, ""life_stage"": 0.99}",uberon,low_confidence_annotation @@ -2532,8 +2532,8 @@ GSM7473689,GSE234713,GSE234713,IBD CosMx NanoString data from colonic mucosa,Hom GSM7473690,GSE234713,GSE234713,IBD CosMx NanoString data from colonic mucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,colon,luna,UBERON:0001157,transverse colon,colon,primary tissue,MONDO:0005011,Crohn disease,disease,luna,Crohn's disease (CD),,adult,age rule: bare number read as years,adult,38,female,female,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,55559,999,counts,pixel,,unresolved,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,37495570,,GSM7473690,,,train,sda-all,samples/GSE234713/GSM7473690,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7474504,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2038,26136,counts,pixel,4.283103486331238,platform_constant,True,H&E,4.283103486331238,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474504,,,train,hesrt,samples/GSE234774/GSM7474504,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM7474505,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1530,26136,counts,pixel,4.152413990093969,platform_constant,True,H&E,4.152413990093969,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474505,,,train,hesrt,samples/GSE234774/GSM7474505,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM7474506,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1155,26136,counts,pixel,4.239655201561432,platform_constant,True,H&E,4.239655201561432,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474506,,,train,hesrt,samples/GSE234774/GSM7474506,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.97, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM7474507,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,740,26136,counts,pixel,4.347585977344012,platform_constant,True,H&E,4.347585977344012,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474507,,,train,hesrt,samples/GSE234774/GSM7474507,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 0.97}",disease_status,low_confidence_annotation +GSM7474506,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1155,26136,counts,pixel,4.2396552015614315,platform_constant,True,H&E,4.2396552015614315,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474506,,,train,hesrt,samples/GSE234774/GSM7474506,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.97, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM7474507,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,740,26136,counts,pixel,4.3475859773440115,platform_constant,True,H&E,4.3475859773440115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474507,,,train,hesrt,samples/GSE234774/GSM7474507,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 0.97}",disease_status,low_confidence_annotation GSM7474508,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3138,26136,counts,pixel,4.258965729763772,platform_constant,True,H&E,4.258965729763772,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474508,,,train,hesrt,samples/GSE234774/GSM7474508,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7474509,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1689,26136,counts,pixel,4.3337930859397575,platform_constant,True,H&E,4.3337930859397575,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474509,,,train,hesrt,samples/GSE234774/GSM7474509,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7474510,GSE234774,GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0003038,thoracic spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"Mixture of uninjured, 7 days post SCI, 2 months post SCI",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2629,26136,counts,pixel,4.314827663852226,platform_constant,True,H&E,4.314827663852226,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38898272;38907165,,GSM7474510,,,train,hesrt,samples/GSE234774/GSM7474510,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -2560,11 +2560,11 @@ GSM7497629,GSE235247,GSE235247,Aging- and Alcohol-Associated Spatial Transcripto GSM7497630,GSE235247,GSE235247,Aging- and Alcohol-Associated Spatial Transcriptomic Signature in Mouse Acute Pancreatitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,Acute Pancreatitis,Alcohol and cerulein induced Acute Pancreatitis,aged,age rule: age with unit,aged,18 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2096,19465,counts,pixel,4.6805898328469775,platform_constant,True,H&E,4.6805898328469775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38940937,,GSM7497630,,,test,hesrt,samples/GSE235247/GSM7497630,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7497631,GSE235247,GSE235247,Aging- and Alcohol-Associated Spatial Transcriptomic Signature in Mouse Acute Pancreatitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,Acute Pancreatitis,Alcohol and cerulein induced Acute Pancreatitis,adult,age rule: age with unit,juvenile,3 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1627,19465,counts,pixel,4.4146238721223305,platform_constant,True,H&E,4.4146238721223305,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38940937,,GSM7497631,,,test,hesrt,samples/GSE235247/GSM7497631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.78}",, GSM7497632,GSE235247,GSE235247,Aging- and Alcohol-Associated Spatial Transcriptomic Signature in Mouse Acute Pancreatitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,Acute Pancreatitis,Alcohol and cerulein induced Acute Pancreatitis,adult,age rule: age with unit,juvenile,3 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,768,19465,counts,pixel,4.493439879053798,platform_constant,True,H&E,4.493439879053798,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38940937,,GSM7497632,,,test,hesrt,samples/GSE235247/GSM7497632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.66}",, -GSM7498811,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3947,17943,counts,pixel,3.926740690611749,platform_constant,True,H&E,3.926740690611749,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498811,,,train,hesrt,samples/GSE235315/GSM7498811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7498811,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3947,17943,counts,pixel,3.9267406906117492,platform_constant,True,H&E,3.9267406906117492,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498811,,,train,hesrt,samples/GSE235315/GSM7498811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7498812,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2248,17943,counts,pixel,3.920592149414351,platform_constant,True,H&E,3.920592149414351,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498812,,,train,hesrt,samples/GSE235315/GSM7498812,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7498813,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4373,17943,counts,pixel,3.919623334357401,platform_constant,True,H&E,3.919623334357401,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498813,,,train,hesrt,samples/GSE235315/GSM7498813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7498814,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4649,17943,counts,pixel,3.8947156030376986,platform_constant,True,H&E,3.8947156030376986,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498814,,,train,hesrt,samples/GSE235315/GSM7498814,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7498815,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3168,17943,counts,pixel,3.9205175318703143,platform_constant,True,H&E,3.9205175318703143,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498815,,,train,hesrt,samples/GSE235315/GSM7498815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7498815,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3168,17943,counts,pixel,3.9205175318703147,platform_constant,True,H&E,3.9205175318703147,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498815,,,train,hesrt,samples/GSE235315/GSM7498815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7498816,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3582,17943,counts,pixel,3.918178254479015,platform_constant,True,H&E,3.918178254479015,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498816,,,train,hesrt,samples/GSE235315/GSM7498816,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7498817,GSE235315+GSE235452,GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tissue,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic cancer,pancreatic cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3468,17943,counts,pixel,3.941995014479929,platform_constant,True,H&E,3.941995014479929,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38297291,,GSM7498817,,,train,hesrt,samples/GSE235315/GSM7498817,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7505850,GSE235583+GSE235585,GSE235583,Deciphering the spatio-temporal transcriptional and chromatin accessibility of human retinal organoid development at the single cell level [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000970,eye,organoid,organoid,,,normal,luna,,,not stated,luna,not stated,D10,unknown,,GSE235583:AD3,AD3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1077,33538,counts,pixel,4.645410104501006,platform_constant,True,H&E,4.645410104501006,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7505850,,,train,hesrt,samples/GSE235583/GSM7505850,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.92, ""life_stage"": 1.0}",, @@ -2608,8 +2608,8 @@ GSM7507324,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint GSM7507325,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,newly_diagnosed,adult,age rule: age in years,adult,52 years,female,female,GSE235672:Pt13,Pt13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2578,33538,counts,pixel,4.441651142699947,platform_constant,True,H&E,4.441651142699947,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507325,,,train,hesrt,samples/GSE235672/GSM7507325,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7507326,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,newly_diagnosed,aged,age rule: age in years,aged,71 years,male,male,GSE235672:Pt14,Pt14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1948,33538,counts,pixel,4.439713867109834,platform_constant,True,H&E,4.439713867109834,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507326,,,train,hesrt,samples/GSE235672/GSM7507326,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7507327,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,Neoadjuvant,adult,age rule: age in years,adult,23 years,male,male,GSE235672:Pt15,Pt15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2149,33538,counts,pixel,3.9086965161018665,platform_constant,True,H&E,3.9086965161018665,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507327,,,train,hesrt,samples/GSE235672/GSM7507327,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7507328,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,Neoadjuvant,adult,age rule: age in years,adult,22 years,male,male,GSE235672:Pt16,Pt16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2897,33538,counts,pixel,3.957587394380952,platform_constant,True,H&E,3.957587394380952,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507328,,,train,hesrt,samples/GSE235672/GSM7507328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7507329,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,Neoadjuvant,adult,age rule: age in years,adult,45 years,male,male,GSE235672:Pt17,Pt17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2320,33538,counts,pixel,3.956088749599685,platform_constant,True,H&E,3.956088749599685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507329,,,train,hesrt,samples/GSE235672/GSM7507329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7507328,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,Neoadjuvant,adult,age rule: age in years,adult,22 years,male,male,GSE235672:Pt16,Pt16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2897,33538,counts,pixel,3.9575873943809516,platform_constant,True,H&E,3.9575873943809516,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507328,,,train,hesrt,samples/GSE235672/GSM7507328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7507329,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,Neoadjuvant,adult,age rule: age in years,adult,45 years,male,male,GSE235672:Pt17,Pt17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2320,33538,counts,pixel,3.9560887495996844,platform_constant,True,H&E,3.9560887495996844,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507329,,,train,hesrt,samples/GSE235672/GSM7507329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7507330,GSE235672+GSE235913,GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,Neoadjuvant,adult,age rule: age in years,adult,39 years,female,female,GSE235672:Pt18,Pt18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2751,33538,counts,pixel,3.87426118488143,platform_constant,True,H&E,3.87426118488143,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37460871,,GSM7507330,,,train,hesrt,samples/GSE235672/GSM7507330,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7508783,GSE235743,GSE235743,Genetic vulnerability to healing reveals a spatially resolved epithelial restitution program,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,distal colon,primary tissue,,,normal,luna,,"Hgfac WT, intact tissues",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,502,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37878672,10.1126/scitranslmed.adg5252,GSM7508783,,,train,hesrt,samples/GSE235743/GSM7508783,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, GSM7508784,GSE235743,GSE235743,Genetic vulnerability to healing reveals a spatially resolved epithelial restitution program,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,distal colon,primary tissue,,,perturbation,luna,,"Hgfac WT, day2 wounds",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,640,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37878672,10.1126/scitranslmed.adg5252,GSM7508784,,,train,hesrt,samples/GSE235743/GSM7508784,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -2636,14 +2636,14 @@ GSM7848719,GSE235896,GSE235896,Decoder-seq enhances mRNA capture efficiency in s GSM7848720,GSE235896,GSE235896,Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,mouse olfactory bulb,primary tissue,,,normal,luna,,rep3,not stated,luna,not stated,,unknown,,,,,,Other,release v3,Decoder-seq,sequencing-based,Decoder-seq,,,,926,43513,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7848720,,,train,hesrt,samples/GSE235896/GSM7848720,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7915845,GSE235896,GSE235896,Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,mouse olfactory bulb,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Other,release v3,Decoder-seq,sequencing-based,Decoder-seq,,,,761,38917,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7915845,,,train,hesrt,samples/GSE235896/GSM7915845,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7915846,GSE235896,GSE235896,Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,mouse olfactory bulb,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Other,release v3,Decoder-seq,sequencing-based,Decoder-seq,,,,771,29414,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7915846,,,train,hesrt,samples/GSE235896/GSM7915846,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7519181,GSE236171,GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Naive control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2968,31053,counts,pixel,3.9896117040372814,platform_constant,True,H&E,3.9896117040372814,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38007580,,GSM7519181,,,val,hesrt,samples/GSE236171/GSM7519181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7519181,GSE236171,GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Naive control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2968,31053,counts,pixel,3.9896117040372823,platform_constant,True,H&E,3.9896117040372823,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38007580,,GSM7519181,,,val,hesrt,samples/GSE236171/GSM7519181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7519182,GSE236171,GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0858950,traumatic brain injury,disease,luna,,TBI 3 dpi,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2442,31053,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38007580,,GSM7519182,,,val,hesrt,samples/GSE236171/GSM7519182,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7574423,GSE236171,GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0858950,traumatic brain injury,disease,luna,,TBI 6 hpi,not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics (legacy),,,spot,813,30609,counts,pixel,1.497472527499345,platform_constant,True,H&E,1.497472527499345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38007580,,GSM7574423,,,val,hesrt,samples/GSE236171/GSM7574423,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7574424,GSE236171,GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0858950,traumatic brain injury,disease,luna,,TBI 3 dpi,not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics (legacy),,,spot,659,21425,counts,pixel,4.299484818225461,platform_constant,True,H&E,4.299484818225461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38007580,,GSM7574424,,,val,hesrt,samples/GSE236171/GSM7574424,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7536059,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1291,32287,counts,pixel,3.956010059923841,platform_constant,True,H&E,3.956010059923841,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536059,,,train,hesrt,samples/GSE236424/GSM7536059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7536060,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1390,32287,counts,pixel,4.1196444613298935,platform_constant,True,H&E,4.1196444613298935,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536060,,,train,hesrt,samples/GSE236424/GSM7536060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7536061,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,970,32287,counts,pixel,4.004999578601992,platform_constant,True,H&E,4.004999578601992,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536061,,,train,hesrt,samples/GSE236424/GSM7536061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM7536062,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1033,32287,counts,pixel,4.021413262978911,platform_constant,True,H&E,4.021413262978911,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536062,,,train,hesrt,samples/GSE236424/GSM7536062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7536062,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1033,32287,counts,pixel,4.0214132629789106,platform_constant,True,H&E,4.0214132629789106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536062,,,train,hesrt,samples/GSE236424/GSM7536062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7536063,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,984,32287,counts,pixel,4.004999578602001,platform_constant,True,H&E,4.004999578602001,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536063,,,train,hesrt,samples/GSE236424/GSM7536063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7536065,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1250,32287,counts,pixel,4.004999578601992,platform_constant,True,H&E,4.004999578601992,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536065,,,train,hesrt,samples/GSE236424/GSM7536065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7536066,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,neonatal or infant,luna,neonatal or infant,Newborn,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,897,32287,counts,pixel,4.004999578602001,platform_constant,True,H&E,4.004999578602001,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536066,,,train,hesrt,samples/GSE236424/GSM7536066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -2656,8 +2656,8 @@ GSM7536073,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity GSM7536075,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,juvenile,luna,juvenile,Juvenile,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1397,32287,counts,pixel,4.037574659516483,platform_constant,True,H&E,4.037574659516483,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536075,,,train,hesrt,samples/GSE236424/GSM7536075,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7536076,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,juvenile,luna,juvenile,Juvenile,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1636,32287,counts,pixel,4.10323041374242,platform_constant,True,H&E,4.10323041374242,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536076,,,train,hesrt,samples/GSE236424/GSM7536076,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7536077,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1168,32287,counts,pixel,4.004999578602001,platform_constant,True,H&E,4.004999578602001,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536077,,,train,hesrt,samples/GSE236424/GSM7536077,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7536078,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1196,32287,counts,pixel,4.021413262978911,platform_constant,True,H&E,4.021413262978911,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536078,,,train,hesrt,samples/GSE236424/GSM7536078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7536079,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1170,32287,counts,pixel,4.021413262978911,platform_constant,True,H&E,4.021413262978911,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536079,,,train,hesrt,samples/GSE236424/GSM7536079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7536078,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1196,32287,counts,pixel,4.0214132629789106,platform_constant,True,H&E,4.0214132629789106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536078,,,train,hesrt,samples/GSE236424/GSM7536078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7536079,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1170,32287,counts,pixel,4.0214132629789106,platform_constant,True,H&E,4.0214132629789106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536079,,,train,hesrt,samples/GSE236424/GSM7536079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7536080,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,LV-transduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1259,32287,counts,pixel,4.037827415129904,platform_constant,True,H&E,4.037827415129904,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536080,,,train,hesrt,samples/GSE236424/GSM7536080,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7536081,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1635,32287,counts,pixel,4.034544380791632,platform_constant,True,H&E,4.034544380791632,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536081,,,train,hesrt,samples/GSE236424/GSM7536081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7536082,GSE236424+GSE236425,GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,Untransduced,adult,luna,adult,Adult,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1338,32287,counts,pixel,4.076968251989529,platform_constant,True,H&E,4.076968251989529,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7536082,,,train,hesrt,samples/GSE236424/GSM7536082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2670,7 +2670,7 @@ GSM7567295,GSE236660,GSE236660,Effect of Aging on the Human Myometrium at Single GSM7567296,GSE236660,GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001296,myometrium,Myometrium,primary tissue,,,normal,luna,,Postmenopause,not stated,luna,not stated,,unknown,,GSE236660:15,15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2270,17943,counts,pixel,4.071585233904576,platform_constant,True,H&E,4.071585233904576,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38296945,,GSM7567296,,,train,hesrt,samples/GSE236660/GSM7567296,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.67}",, GSM7567297,GSE236660,GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001296,myometrium,Myometrium,primary tissue,,,normal,luna,,Perimenopause,not stated,luna,not stated,,unknown,,GSE236660:17,17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2109,17943,counts,pixel,4.03332587668454,platform_constant,True,H&E,4.03332587668454,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38296945,,GSM7567297,,,train,hesrt,samples/GSE236660/GSM7567297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",, GSM7567298,GSE236660,GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001296,myometrium,Myometrium,primary tissue,,,normal,luna,,Perimenopause,not stated,luna,not stated,,unknown,,GSE236660:18,18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3555,17943,counts,pixel,3.9942814538060425,platform_constant,True,H&E,3.9942814538060425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38296945,,GSM7567298,,,train,hesrt,samples/GSE236660/GSM7567298,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.49}",life_stage,low_confidence_annotation -GSM7567299,GSE236660,GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001296,myometrium,Myometrium,primary tissue,,,normal,luna,,Postmenopause,not stated,luna,not stated,,unknown,,GSE236660:20,20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2685,17943,counts,pixel,4.003796986678887,platform_constant,True,H&E,4.003796986678887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38296945,,GSM7567299,,,train,hesrt,samples/GSE236660/GSM7567299,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.74}",, +GSM7567299,GSE236660,GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001296,myometrium,Myometrium,primary tissue,,,normal,luna,,Postmenopause,not stated,luna,not stated,,unknown,,GSE236660:20,20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2685,17943,counts,pixel,4.0037969866788865,platform_constant,True,H&E,4.0037969866788865,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38296945,,GSM7567299,,,train,hesrt,samples/GSE236660/GSM7567299,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.74}",, GSM7567492,GSE236681,GSE236681,Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens Mus musculus",,liver,luna,UBERON:0002107,liver,Liver metastatic breast tumor,xenograft,MONDO:0024883;MONDO:0007254,metastatic neoplasm;breast cancer,disease,luna,,NOD scid gamma,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1937,116124,counts,um,1.0,verified,True,H&E-like (heuristic),4.211124347484764,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,35259269,,GSM7567492,,,train,sda-all,samples/GSE236681/GSM7567492,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.30000000000000004, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",sample_kind,low_confidence_annotation GSM7567493,GSE236681,GSE236681,Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens @@ -2683,19 +2683,19 @@ GSM7573205,GSE236698,GSE236698,Mucinous colorectal adenocarcinoma,Homo sapiens,9 GSM8286350,GSE236698,GSE236698,Mucinous colorectal adenocarcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,mucinous colorectal adenocarinoma,normal,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1725,18085,counts,pixel,3.8819090836503287,platform_constant,True,H&E,3.8819090836503287,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38778448,,GSM8286350,,,test,hesrt,samples/GSE236698/GSM8286350,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",,normal_but_disease_text GSM7580115,GSE236890,GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,,CD45RBhi transfer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3848,32285,counts,um,1.0,verified,True,H&E,5.107762138834163,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42097141,,GSM7580115,,,train,sda-all,samples/GSE236890/GSM7580115,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7580116,GSE236890,GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,,CD45RBhi transfer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3749,32285,counts,um,1.0,verified,True,H&E,5.097461099224352,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42097141,,GSM7580116,,,train,sda-all,samples/GSE236890/GSM7580116,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, -GSM7580117,GSE236890,GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,,CD45RBhi transfer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4398,32285,counts,um,1.0,verified,True,H&E,5.096851577997184,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42097141,,GSM7580117,,,train,sda-all,samples/GSE236890/GSM7580117,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.58}",life_stage,low_confidence_annotation +GSM7580117,GSE236890,GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,,CD45RBhi transfer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4398,32285,counts,um,1.0,verified,True,H&E,5.0968515779971835,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42097141,,GSM7580117,,,train,sda-all,samples/GSE236890/GSM7580117,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.58}",life_stage,low_confidence_annotation GSM7580118,GSE236890,GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,MONDO:0005292,colitis,disease,luna,,CD45RBhi transfer + anti-IL12p40,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4072,32285,counts,um,1.0,verified,True,H&E,5.108122084813728,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,42097141,,GSM7580118,,,train,sda-all,samples/GSE236890/GSM7580118,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 0.54}",life_stage,low_confidence_annotation -GSM7589541,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3144,32285,counts,pixel,0.3786547949310576,platform_constant,True,H&E,0.5000074689440399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589541,,,train,hesrt,samples/GSE236963/GSM7589541,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM7589541,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3144,32285,counts,pixel,0.37865479493105764,platform_constant,True,H&E,0.5000074689440399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589541,,,train,hesrt,samples/GSE236963/GSM7589541,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7589543,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2648,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.5000049586646902,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589543,,,train,hesrt,samples/GSE236963/GSM7589543,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7589544,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2580,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.4999936938278542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589544,,,train,hesrt,samples/GSE236963/GSM7589544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM7589545,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2881,32285,counts,pixel,0.3787444074066846,platform_constant,True,H&E,0.4999988254322823,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589545,,,train,hesrt,samples/GSE236963/GSM7589545,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM7589546,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3024,32285,counts,pixel,0.3787444074066846,platform_constant,True,H&E,0.5000078716589326,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589546,,,train,hesrt,samples/GSE236963/GSM7589546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM7589548,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3070,32285,counts,pixel,0.3786547949310576,platform_constant,True,H&E,0.5000010802007053,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589548,,,train,hesrt,samples/GSE236963/GSM7589548,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7589549,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2477,32285,counts,pixel,0.3786547949310576,platform_constant,True,H&E,0.5000010802007053,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589549,,,train,hesrt,samples/GSE236963/GSM7589549,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7589544,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2580,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.49999369382785425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589544,,,train,hesrt,samples/GSE236963/GSM7589544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM7589545,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2881,32285,counts,pixel,0.37874440740668464,platform_constant,True,H&E,0.49999882543228236,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589545,,,train,hesrt,samples/GSE236963/GSM7589545,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM7589546,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,naive,adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3024,32285,counts,pixel,0.37874440740668464,platform_constant,True,H&E,0.5000078716589326,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589546,,,train,hesrt,samples/GSE236963/GSM7589546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM7589548,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3070,32285,counts,pixel,0.37865479493105764,platform_constant,True,H&E,0.5000010802007053,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589548,,,train,hesrt,samples/GSE236963/GSM7589548,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7589549,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2477,32285,counts,pixel,0.37865479493105764,platform_constant,True,H&E,0.5000010802007053,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589549,,,train,hesrt,samples/GSE236963/GSM7589549,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7589550,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2460,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.4999912862309797,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589550,,,train,hesrt,samples/GSE236963/GSM7589550,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7589551,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2501,32285,counts,pixel,0.377613994090162,platform_constant,True,H&E,0.5000025402810795,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589551,,,train,hesrt,samples/GSE236963/GSM7589551,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7589551,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2501,32285,counts,pixel,0.37761399409016205,platform_constant,True,H&E,0.5000025402810795,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589551,,,train,hesrt,samples/GSE236963/GSM7589551,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7589553,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2791,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.500000945310501,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589553,,,train,hesrt,samples/GSE236963/GSM7589553,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7589554,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2804,32285,counts,pixel,0.3787444074066846,platform_constant,True,H&E,0.4999924674744782,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589554,,,train,hesrt,samples/GSE236963/GSM7589554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7589554,GSE236963,GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,experimental autoimmune encephalomyelitis,Kleptose (vehicle),adult,age rule: age with unit,not stated,7–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2804,32285,counts,pixel,0.37874440740668464,platform_constant,True,H&E,0.49999246747447823,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39475792,,GSM7589554,,,train,hesrt,samples/GSE236963/GSM7589554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7594569,GSE237086,GSE237086,Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,Mecp2 KO/+,adult,age rule: age with unit,adult,8-10-week,female,Female,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,226657,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,zero_count_observations,VERIFIED,,,,,,GSM7594569,,,train,sda-all,samples/GSE237086/GSM7594569,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7594570,GSE237086,GSE237086,Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,Mecp2 KO/+,adult,age rule: age with unit,adult,8-10-week,female,Female,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,223562,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,zero_count_observations,VERIFIED,,,,,,GSM7594570,,,train,sda-all,samples/GSE237086/GSM7594570,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7594571,GSE237086,GSE237086,Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,Mecp2 KO/+,adult,age rule: age with unit,adult,8-10-week,female,Female,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,127853,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,,,GSM7594571,,,train,sda-all,samples/GSE237086/GSM7594571,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 0.98}",, @@ -2704,18 +2704,18 @@ GSM7594573,GSE237086,GSE237086,Non-CG DNA methylation and MeCP2 stabilize repeat GSM7595667,GSE237119,GSE237119,Red blood cells-heme-exposure and tumor-associated macrophage identity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,unknown,luna,,,tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,anti-CD40 treated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2188,15295,counts,pixel,7.1679774239447305,platform_constant,True,H&E,7.1679774239447305,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38060331,,GSM7595667,,,train,hesrt,samples/GSE237119/GSM7595667,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM7595668,GSE237119,GSE237119,Red blood cells-heme-exposure and tumor-associated macrophage identity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,unknown,luna,,,tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,anti-CD40 treated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2186,13916,counts,pixel,7.295908988485231,platform_constant,True,H&E,7.295908988485231,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38060331,,GSM7595668,,,train,hesrt,samples/GSE237119/GSM7595668,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM7596587,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,unannotated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2397,33538,counts,pixel,16.539701565210255,platform_constant,True,H&E,16.539701565210255,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596587,,,test,hesrt,samples/GSE237183/GSM7596587,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7596588,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1387,33538,counts,pixel,13.315960839301304,platform_constant,True,H&E,13.315960839301304,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596588,,,test,hesrt,samples/GSE237183/GSM7596588,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7596588,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1387,33538,counts,pixel,13.315960839301303,platform_constant,True,H&E,13.315960839301303,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596588,,,test,hesrt,samples/GSE237183/GSM7596588,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596589,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,T1 contrast-enhancing,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2792,33538,counts,pixel,13.409946533937832,platform_constant,True,H&E,13.409946533937832,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596589,,,test,hesrt,samples/GSE237183/GSM7596589,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596590,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,bulk,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2199,33538,counts,pixel,15.033867500268697,platform_constant,True,H&E,15.033867500268697,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596590,,,test,hesrt,samples/GSE237183/GSM7596590,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7596591,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1280,33538,counts,pixel,13.782014446254983,platform_constant,True,H&E,13.782014446254983,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596591,,,test,hesrt,samples/GSE237183/GSM7596591,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7596592,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,T1 contrast-enhancing,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2780,33538,counts,pixel,13.673494509636727,platform_constant,True,H&E,13.673494509636727,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596592,,,test,hesrt,samples/GSE237183/GSM7596592,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7596591,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1280,33538,counts,pixel,13.782014446254985,platform_constant,True,H&E,13.782014446254985,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596591,,,test,hesrt,samples/GSE237183/GSM7596591,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7596592,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,T1 contrast-enhancing,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2780,33538,counts,pixel,13.673494509636729,platform_constant,True,H&E,13.673494509636729,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596592,,,test,hesrt,samples/GSE237183/GSM7596592,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596593,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1436,33538,counts,pixel,14.886070747525958,platform_constant,True,H&E,14.886070747525958,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596593,,,test,hesrt,samples/GSE237183/GSM7596593,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596594,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,necrotic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,955,33538,counts,pixel,14.97185567923029,platform_constant,True,H&E,14.97185567923029,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596594,,,test,hesrt,samples/GSE237183/GSM7596594,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7596595,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1726,33538,counts,pixel,14.593005062132267,platform_constant,True,H&E,14.593005062132267,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596595,,,test,hesrt,samples/GSE237183/GSM7596595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7596595,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,infiltrating,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1726,33538,counts,pixel,14.593005062132269,platform_constant,True,H&E,14.593005062132269,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596595,,,test,hesrt,samples/GSE237183/GSM7596595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596596,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,T1 contrast-enhancing,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1112,33538,counts,pixel,14.598819232040878,platform_constant,True,H&E,14.598819232040878,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596596,,,test,hesrt,samples/GSE237183/GSM7596596,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596597,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,1a,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2486,33538,counts,pixel,15.028053663234306,platform_constant,True,H&E,15.028053663234306,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596597,,,test,hesrt,samples/GSE237183/GSM7596597,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596598,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,1b,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2595,33538,counts,pixel,15.032898344639849,platform_constant,True,H&E,15.032898344639849,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596598,,,test,hesrt,samples/GSE237183/GSM7596598,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7596599,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,2,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2343,33538,counts,pixel,15.029690936060732,platform_constant,True,H&E,15.029690936060732,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596599,,,test,hesrt,samples/GSE237183/GSM7596599,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7596599,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,2,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2343,33538,counts,pixel,15.029690936060733,platform_constant,True,H&E,15.029690936060733,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,GSM7596599,,,test,hesrt,samples/GSE237183/GSM7596599,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596600,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0016695,oligodendroglioma,disease,luna,glioblastoma,bwh23,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,965,33538,counts,pixel,14.693002002102968,platform_constant,True,H&E,14.693002002102968,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,CG-05164fc8edb1,cross_gse_redeposit,GSM9902434,test,hesrt,samples/GSE237183/GSM7596600,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596601,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0019781;MONDO:0016680,astrocytoma (excluding glioblastoma);high grade astrocytic tumor,disease,luna,glioblastoma,bwh24,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3105,33538,counts,pixel,14.697675171125592,platform_constant,True,H&E,14.697675171125592,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,CG-f16c46bb5f15,cross_gse_redeposit,GSM9902421,test,hesrt,samples/GSE237183/GSM7596601,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7596602,GSE237183,GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,human glioblastoma,tumour tissue,MONDO:0019781;MONDO:0016680,astrocytoma (excluding glioblastoma);high grade astrocytic tumor,disease,luna,glioblastoma,bwh25,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2607,33538,counts,pixel,16.377906290109205,platform_constant,True,H&E,16.377906290109205,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38653236,,CG-c68a244ffa56,cross_gse_redeposit,GSM9902422,test,hesrt,samples/GSE237183/GSM7596602,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2747,14 +2747,14 @@ GSM7661257,GSE238264,GSE238264,Spatial transcriptomics analysis of neoadjuvant c GSM7661258,GSE238264,GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,cabozantinib+nivolumab,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3002,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.993536413188702,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37723590,,GSM7661258,,,test,sda-all,samples/GSE238264/GSM7661258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7661259,GSE238264,GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,cabozantinib+nivolumab,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1320,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.9573557720855534,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37723590,,GSM7661259,,,test,sda-all,samples/GSE238264/GSM7661259,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7661260,GSE238264,GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,cabozantinib+nivolumab,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2575,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.026418922831429,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37723590,,GSM7661260,,,test,sda-all,samples/GSE238264/GSM7661260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7661261,GSE238264,GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,cabozantinib+nivolumab,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2453,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.134633271357084,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37723590,,GSM7661261,,,test,sda-all,samples/GSE238264/GSM7661261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7661261,GSE238264,GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,cabozantinib+nivolumab,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2453,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.1346332713570835,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,37723590,,GSM7661261,,,test,sda-all,samples/GSE238264/GSM7661261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7679867,GSE240015,GSE240015,Age-related epithelial defects limit thymic function and regeneration [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,untreated,adult,age rule: age with unit,adult,2 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3010,32285,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39112630,,GSM7679867,,,train,hesrt,samples/GSE240015/GSM7679867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.76}",, GSM7679868,GSE240015,GSE240015,Age-related epithelial defects limit thymic function and regeneration [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,untreated,aged,age rule: age with unit,aged,18 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1392,32285,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39112630,,GSM7679868,,,train,hesrt,samples/GSE240015/GSM7679868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7681545,GSE240102+GSE240107,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1357,49822,counts,um,1.0,verified,False,,,PARTIAL,ABSENT,ABSENT,,,VERIFIED,UNSURE,,,,,GSM7681545,,,train,sda-all,samples/GSE240102/GSM7681545,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": NaN, ""life_stage"": 0.91}",disease_status,low_confidence_annotation GSM7681546,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2087,49822,counts,pixel,3.884114799089389,platform_constant,True,H&E,3.884114799089389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681546,,,test,hesrt,samples/GSE240102/GSM7681546,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": NaN, ""life_stage"": 0.84}",disease_status,low_confidence_annotation GSM7681547,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2054,49822,counts,pixel,3.8975544820484447,platform_constant,True,H&E,3.8975544820484447,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681547,,,test,hesrt,samples/GSE240102/GSM7681547,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": NaN, ""life_stage"": 0.91}",disease_status,low_confidence_annotation GSM7681548,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1932,49822,counts,pixel,3.884114799089372,platform_constant,True,H&E,3.884114799089372,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681548,,,test,hesrt,samples/GSE240102/GSM7681548,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": NaN, ""life_stage"": 0.91}",disease_status,low_confidence_annotation -GSM7681549,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2506,94448,counts,pixel,3.870790338369976,platform_constant,True,H&E,3.870790338369976,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681549,,,test,hesrt,samples/GSE240102/GSM7681549,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": NaN, ""life_stage"": 0.89}",disease_status,low_confidence_annotation +GSM7681549,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2506,94448,counts,pixel,3.8707903383699764,platform_constant,True,H&E,3.8707903383699764,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681549,,,test,hesrt,samples/GSE240102/GSM7681549,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": NaN, ""life_stage"": 0.89}",disease_status,low_confidence_annotation GSM7681550,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2657,94448,counts,pixel,3.857511586154025,platform_constant,True,H&E,3.857511586154025,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681550,,,test,hesrt,samples/GSE240102/GSM7681550,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": NaN, ""life_stage"": 0.88}",disease_status,low_confidence_annotation GSM7681551,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2844,94448,counts,pixel,3.884114799089389,platform_constant,True,H&E,3.884114799089389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681551,,,test,hesrt,samples/GSE240102/GSM7681551,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": NaN, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation GSM7681552,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2360,94448,counts,pixel,3.884114799089372,platform_constant,True,H&E,3.884114799089372,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681552,,,test,hesrt,samples/GSE240102/GSM7681552,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": NaN, ""life_stage"": 0.84}",disease_status,low_confidence_annotation @@ -2762,13 +2762,13 @@ GSM7681553,GSE240102+GSE240107,GSE240102,Spatial Co-transcriptomics Reveals Disc GSM7681554,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1512,94448,counts,pixel,3.900244997569857,platform_constant,True,H&E,3.900244997569857,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681554,,,test,hesrt,samples/GSE240102/GSM7681554,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": NaN, ""life_stage"": 0.86}",disease_status,low_confidence_annotation GSM7681555,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1782,94448,counts,pixel,3.900244997569866,platform_constant,True,H&E,3.900244997569866,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681555,,,test,hesrt,samples/GSE240102/GSM7681555,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": NaN, ""life_stage"": 0.93}",disease_status,low_confidence_annotation GSM7681556,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,perturbation,luna,,"inoculated with Rhizophagus irregularis DAOM 181602, DAOM 197198",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1808,94448,counts,pixel,3.900244997569857,platform_constant,True,H&E,3.900244997569857,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681556,,,test,hesrt,samples/GSE240102/GSM7681556,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": NaN, ""life_stage"": 0.74}",disease_status,low_confidence_annotation -GSM7681557,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1920,94448,counts,pixel,3.899361209518944,platform_constant,True,H&E,3.899361209518944,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681557,,,test,hesrt,samples/GSE240102/GSM7681557,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 0.77}",, +GSM7681557,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1920,94448,counts,pixel,3.8993612095189434,platform_constant,True,H&E,3.8993612095189434,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681557,,,test,hesrt,samples/GSE240102/GSM7681557,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 0.77}",, GSM7681558,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2217,94448,counts,pixel,3.899361209518926,platform_constant,True,H&E,3.899361209518926,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681558,,,test,hesrt,samples/GSE240102/GSM7681558,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.86}",, GSM7681559,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1836,94448,counts,pixel,3.899361209518943,platform_constant,True,H&E,3.899361209518943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681559,,,test,hesrt,samples/GSE240102/GSM7681559,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.97}",, GSM7681560,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1948,94448,counts,pixel,3.900244997569874,platform_constant,True,H&E,3.900244997569874,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681560,,,test,hesrt,samples/GSE240102/GSM7681560,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": NaN, ""life_stage"": 0.92}",, GSM7681561,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1655,94448,counts,pixel,3.900775558934123,platform_constant,True,H&E,3.900775558934123,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681561,,,test,hesrt,samples/GSE240102/GSM7681561,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": NaN, ""life_stage"": 0.93}",, GSM7681562,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1559,94448,counts,pixel,3.900775558934123,platform_constant,True,H&E,3.900775558934123,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681562,,,test,hesrt,samples/GSE240102/GSM7681562,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.73}",, -GSM7681563,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1453,94448,counts,pixel,3.875897239593237,platform_constant,True,H&E,3.875897239593237,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681563,,,test,hesrt,samples/GSE240102/GSM7681563,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 0.99}",, +GSM7681563,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1453,94448,counts,pixel,3.8758972395932374,platform_constant,True,H&E,3.8758972395932374,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681563,,,test,hesrt,samples/GSE240102/GSM7681563,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM7681564,GSE240102,GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,Medicago truncatula,3880,barrel medic,Medicago truncatula,3880,,False,False,GEO organism field,Medicago truncatula,,plant,luna,,,root,primary tissue,,,normal,luna,,not inoculated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1400,94448,counts,pixel,3.883768465932773,platform_constant,True,H&E,3.883768465932773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7681564,,,test,hesrt,samples/GSE240102/GSM7681564,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": NaN, ""life_stage"": 0.88}",, GSM7689279,GSE240271,GSE240271,High-resolution spatial transcriptomics of hormone-induced ovulation in mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,Untreated,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh-frozen,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,75538,31053,counts,pixel,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,37662215;40060619;41888598,,GSM7689279,,,train,sda-all,samples/GSE240271/GSM7689279,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.84}",, GSM7689280,GSE240271,GSE240271,High-resolution spatial transcriptomics of hormone-induced ovulation in mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,perturbation,luna,,PMSG,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,75094,31053,counts,pixel,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,37662215;40060619;41888598,,GSM7689280,,,train,sda-all,samples/GSE240271/GSM7689280,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -2825,15 +2825,15 @@ GSM7757975,GSE242311,GSE242311,Spatial heterogeneity of integrins and their liga GSM7757976,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2622,17943,counts,pixel,3.9835185843037886,platform_constant,True,H&E,3.9835185843037886,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757976,,,train,hesrt,samples/GSE242311/GSM7757976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7757977,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2707,17943,counts,pixel,4.0450895438572845,platform_constant,True,H&E,4.0450895438572845,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757977,,,train,hesrt,samples/GSE242311/GSM7757977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7757978,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2753,17943,counts,pixel,4.091079192487779,platform_constant,True,H&E,4.091079192487779,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757978,,,train,hesrt,samples/GSE242311/GSM7757978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7757979,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2166,17943,counts,pixel,3.956628250581268,platform_constant,True,H&E,3.956628250581268,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757979,,,train,hesrt,samples/GSE242311/GSM7757979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM7757980,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2305,17943,counts,pixel,3.956628250581268,platform_constant,True,H&E,3.956628250581268,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757980,,,train,hesrt,samples/GSE242311/GSM7757980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM7757979,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2166,17943,counts,pixel,3.9566282505812675,platform_constant,True,H&E,3.9566282505812675,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757979,,,train,hesrt,samples/GSE242311/GSM7757979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM7757980,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2305,17943,counts,pixel,3.9566282505812675,platform_constant,True,H&E,3.9566282505812675,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757980,,,train,hesrt,samples/GSE242311/GSM7757980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7757981,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3127,17943,counts,pixel,4.109676113913455,platform_constant,True,H&E,4.109676113913455,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757981,,,train,hesrt,samples/GSE242311/GSM7757981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7757982,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2440,17943,counts,pixel,3.961905904816689,platform_constant,True,H&E,3.961905904816689,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757982,,,train,hesrt,samples/GSE242311/GSM7757982,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7757983,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2670,17943,counts,pixel,3.941047105785129,platform_constant,True,H&E,3.941047105785129,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757983,,,train,hesrt,samples/GSE242311/GSM7757983,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7757983,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2670,17943,counts,pixel,3.9410471057851293,platform_constant,True,H&E,3.9410471057851293,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757983,,,train,hesrt,samples/GSE242311/GSM7757983,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7757984,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2885,17943,counts,pixel,4.015577677063346,platform_constant,True,H&E,4.015577677063346,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757984,,,train,hesrt,samples/GSE242311/GSM7757984,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7757985,GSE242311,GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,breast cancer,"anthracyclines, taxanes",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3275,17943,counts,pixel,4.015829266504713,platform_constant,True,H&E,4.015829266504713,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39456890;42539924,,GSM7757985,,,train,hesrt,samples/GSE242311/GSM7757985,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7759698,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3594,33538,counts,pixel,0.8522452146352486,platform_constant,True,H&E,0.8522452146352486,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM7759698,,,train,hesrt,samples/GSE242352/GSM7759698,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7759699,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0016695,oligodendroglioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4029,36601,counts,pixel,0.3496503496503496,platform_constant,True,H&E,0.5000052671405922,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM7759699,,,train,hesrt,samples/GSE242352/GSM7759699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7759699,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0016695,oligodendroglioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4029,36601,counts,pixel,0.34965034965034963,platform_constant,True,H&E,0.5000052671405922,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM7759699,,,train,hesrt,samples/GSE242352/GSM7759699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7759700,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3611,36601,counts,pixel,0.8620369344188775,platform_constant,True,H&E,0.8620369344188775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM7759700,,,train,hesrt,samples/GSE242352/GSM7759700,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7759701,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2640,36601,counts,pixel,0.8549194682417608,platform_constant,True,H&E,0.8549194682417608,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM7759701,,,train,hesrt,samples/GSE242352/GSM7759701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7759702,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1879,36601,counts,pixel,0.8620689655172413,platform_constant,True,H&E,0.8620689655172413,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM7759702,,,train,hesrt,samples/GSE242352/GSM7759702,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2846,9 +2846,9 @@ GSM7759708,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity GSM8513873,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2028,18085,counts,pixel,0.3845130131210745,platform_constant,True,H&E,0.5000136346732048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513873,,,train,hesrt,samples/GSE242352/GSM8513873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8513874,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3535,18085,counts,pixel,0.3846125398585985,platform_constant,True,H&E,0.5000030735611136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513874,,,train,hesrt,samples/GSE242352/GSM8513874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8513875,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1298,18085,counts,pixel,0.3846125398585985,platform_constant,True,H&E,0.5000008144589078,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513875,,,train,hesrt,samples/GSE242352/GSM8513875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8513877,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4891,18085,counts,pixel,0.3846153846153846,platform_constant,True,H&E,0.4999887110248132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513877,,,train,hesrt,samples/GSE242352/GSM8513877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8513879,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4473,18085,counts,pixel,0.3845698760800995,platform_constant,True,H&E,0.4999972771013821,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,40514380,,GSM8513879,,,train,hesrt,samples/GSE242352/GSM8513879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM8513880,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2642,18085,counts,pixel,0.3846125398585985,platform_constant,True,H&E,0.499996301816178,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513880,,,train,hesrt,samples/GSE242352/GSM8513880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8513877,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4891,18085,counts,pixel,0.38461538461538464,platform_constant,True,H&E,0.4999887110248132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513877,,,train,hesrt,samples/GSE242352/GSM8513877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8513879,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4473,18085,counts,pixel,0.38456987608009957,platform_constant,True,H&E,0.49999727710138214,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,40514380,,GSM8513879,,,train,hesrt,samples/GSE242352/GSM8513879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM8513880,GSE242352,GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,glioma,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2642,18085,counts,pixel,0.3846125398585985,platform_constant,True,H&E,0.49999630181617805,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40514380,,GSM8513880,,,train,hesrt,samples/GSE242352/GSM8513880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7764368,GSE242471,GSE242471,Probe-based spatial host-pathogen genes expression to study bacterial pathogenesis and the regulation of bacterial virulence factors in tissue.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,Mycobacterium abscessus infection,chronic_infected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3452,19467,counts,pixel,0.630405287987515,platform_constant,True,H&E,0.630405287987515,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39384974,,GSM7764368,,,train,hesrt,samples/GSE242471/GSM7764368,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7764369,GSE242471,GSE242471,Probe-based spatial host-pathogen genes expression to study bacterial pathogenesis and the regulation of bacterial virulence factors in tissue.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,normal,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2938,19467,counts,pixel,0.6296882928849031,platform_constant,True,H&E,0.6296882928849031,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39384974,,GSM7764369,,,train,hesrt,samples/GSE242471/GSM7764369,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8067258,GSE242471,GSE242471,Probe-based spatial host-pathogen genes expression to study bacterial pathogenesis and the regulation of bacterial virulence factors in tissue.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,Mycobacterium abscessus infection,chronic_infected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2875,19467,counts,pixel,0.7200897203181807,platform_constant,True,H&E,0.7200897203181807,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39384974,,GSM8067258,,,train,hesrt,samples/GSE242471/GSM8067258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.98}",, @@ -2866,7 +2866,7 @@ GSM7779847,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of tra GSM7779848,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2940,31053,counts,pixel,4.343204516132813,platform_constant,True,H&E,4.343204516132813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779848,,,train,hesrt,samples/GSE243140/GSM7779848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM7779849,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,perturbation,luna,,Fear conditioned,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3051,31053,counts,pixel,4.361077457132239,platform_constant,True,H&E,4.361077457132239,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779849,,,train,hesrt,samples/GSE243140/GSM7779849,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7779850,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2694,31053,counts,pixel,4.343204516132824,platform_constant,True,H&E,4.343204516132824,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779850,,,train,hesrt,samples/GSE243140/GSM7779850,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7779851,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,perturbation,luna,,Fear conditioned,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2990,31053,counts,pixel,4.477704456734712,platform_constant,True,H&E,4.477704456734712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779851,,,train,hesrt,samples/GSE243140/GSM7779851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7779851,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,perturbation,luna,,Fear conditioned,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2990,31053,counts,pixel,4.4777044567347115,platform_constant,True,H&E,4.4777044567347115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779851,,,train,hesrt,samples/GSE243140/GSM7779851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7779852,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3168,31053,counts,pixel,4.438679270805428,platform_constant,True,H&E,4.438679270805428,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779852,,,train,hesrt,samples/GSE243140/GSM7779852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7779853,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,perturbation,luna,,Fear conditioned,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3019,31053,counts,pixel,4.477704456734717,platform_constant,True,H&E,4.477704456734717,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779853,,,train,hesrt,samples/GSE243140/GSM7779853,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7779854,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3124,31053,counts,pixel,4.438679270805411,platform_constant,True,H&E,4.438679270805411,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779854,,,train,hesrt,samples/GSE243140/GSM7779854,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.84, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -2877,7 +2877,7 @@ GSM7779858,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of tra GSM7779859,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,perturbation,luna,,Fear conditioned,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2785,31053,counts,pixel,4.479124565562172,platform_constant,True,H&E,4.479124565562172,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779859,,,train,hesrt,samples/GSE243140/GSM7779859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7779860,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2517,31053,counts,pixel,4.36107745713226,platform_constant,True,H&E,4.36107745713226,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779860,,,train,hesrt,samples/GSE243140/GSM7779860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7779861,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,perturbation,luna,,Fear conditioned,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3006,31053,counts,pixel,4.361077457132239,platform_constant,True,H&E,4.361077457132239,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779861,,,train,hesrt,samples/GSE243140/GSM7779861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7779862,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3329,31053,counts,pixel,4.897049084282632,platform_constant,True,H&E,4.897049084282632,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779862,,,train,hesrt,samples/GSE243140/GSM7779862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7779862,GSE243140,GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002812,left cerebral hemisphere,left hemisphere mice brain,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3329,31053,counts,pixel,4.8970490842826315,platform_constant,True,H&E,4.8970490842826315,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7779862,,,train,hesrt,samples/GSE243140/GSM7779862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7780155,GSE243168+GSE243280,GSE243168,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,,tumour tissue,MONDO:0007254,breast cancer,disease,luna,Breast Cancer,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Breast Cancer Tumor Microenvironment,xenium-1.4.0.6,cell,142272,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000120606478291,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38114474,,GSM7780155,,,test,sda-all,samples/GSE243168/GSM7780155,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7780296,GSE243179,GSE243179,Clonal proliferation of smooth muscle cell in human atherosclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,coronary sample with plaque erosion,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,atherosclerosis,plaque erosion,adult,age rule: bare number read as years,adult,42,female,female,GSE243179:SI-TS-A1,SI-TS-A1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2615,17943,counts,pixel,4.302083344088542,platform_constant,True,H&E,4.302083344088542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37881937,,GSM7780296,,,train,hesrt,samples/GSE243179/GSM7780296,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7780297,GSE243179,GSE243179,Clonal proliferation of smooth muscle cell in human atherosclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,coronary sample with plaque erosion,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,atherosclerosis,plaque erosion,adult,age rule: bare number read as years,adult,46,female,female,GSE243179:SI-TS-D1,SI-TS-D1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1283,17943,counts,pixel,4.279166818149175,platform_constant,True,H&E,4.279166818149175,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37881937,,GSM7780297,,,train,hesrt,samples/GSE243179/GSM7780297,sda-tissue-disease-2.3,"{""organ"": 0.66, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -2891,14 +2891,14 @@ GSM7784328,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of t GSM7784329,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-negative CHB (EN3 and EN4),Untreated (EN2 and EN4),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1928,36601,counts,pixel,4.1520000724108765,platform_constant,True,H&E,4.1520000724108765,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784329,,,train,hesrt,samples/GSE243367/GSM7784329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7784330,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive (EP1) and HBeAg-negative chronic HBV infection(EN1),Untreated (EP1 and EN1),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1471,36601,counts,pixel,4.12800003434497,platform_constant,True,H&E,4.12800003434497,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784330,,,train,hesrt,samples/GSE243367/GSM7784330,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7784331,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (EP2) and HBsAg loss (SL2),Untreated (EP2) and on-treatment (SL2),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1742,36601,counts,pixel,4.184000107445121,platform_constant,True,H&E,4.184000107445121,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784331,,,train,hesrt,samples/GSE243367/GSM7784331,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM7784332,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (EP3) and HBeAg-negative CHB (EN5),Untreated (EP3 and EN5),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1274,36601,counts,pixel,4.006565549349968,platform_constant,True,H&E,4.006565549349968,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784332,,,train,hesrt,samples/GSE243367/GSM7784332,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7784332,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (EP3) and HBeAg-negative CHB (EN5),Untreated (EP3 and EN5),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1274,36601,counts,pixel,4.0065655493499674,platform_constant,True,H&E,4.0065655493499674,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784332,,,train,hesrt,samples/GSE243367/GSM7784332,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7784333,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (EP4) and HBsAg loss (SL3),Untreated (EP4 and SL3),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2091,36601,counts,pixel,3.9517674766106574,platform_constant,True,H&E,3.9517674766106574,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784333,,,train,hesrt,samples/GSE243367/GSM7784333,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM7784334,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (OT1) and HBeAg-negative CHB (OT2),On-treatment (OT1 and OT2),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1213,36601,counts,pixel,3.958586083116865,platform_constant,True,H&E,3.958586083116865,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784334,,,train,hesrt,samples/GSE243367/GSM7784334,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM7784334,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (OT1) and HBeAg-negative CHB (OT2),On-treatment (OT1 and OT2),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1213,36601,counts,pixel,3.9585860831168653,platform_constant,True,H&E,3.9585860831168653,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784334,,,train,hesrt,samples/GSE243367/GSM7784334,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM7784335,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (OT3) and HBeAg-negative CHB (OT4),On-treatment (OT3 and OT4),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1872,36601,counts,pixel,4.157575699170121,platform_constant,True,H&E,4.157575699170121,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784335,,,train,hesrt,samples/GSE243367/GSM7784335,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM7784336,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (OT6) and HBeAg-negative CHB (OT5),On-treatment (OT5 and OT6),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1574,36601,counts,pixel,4.058080910993748,platform_constant,True,H&E,4.058080910993748,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784336,,,train,hesrt,samples/GSE243367/GSM7784336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM7784336,GSE243367,GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver biopsy,primary tissue,MONDO:0005344,hepatitis B virus infection,disease,luna,HBeAg-positive CHB (OT6) and HBeAg-negative CHB (OT5),On-treatment (OT5 and OT6),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1574,36601,counts,pixel,4.0580809109937475,platform_constant,True,H&E,4.0580809109937475,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37968095,,GSM7784336,,,train,hesrt,samples/GSE243367/GSM7784336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7697868,GSE243981,GSE243981,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,,,normal,luna,,,adult,luna,adult,30–60,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2378,36601,counts,pixel,3.9119879663623887,platform_constant,True,H&E,3.9119879663623887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7697868,,,train,hesrt,samples/GSE243981/GSM7697868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7697869,GSE243981,GSE243981,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,,,normal,luna,,,adult,luna,adult,30–60,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2349,36601,counts,pixel,3.927033572384386,platform_constant,True,H&E,3.927033572384386,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7697869,,,train,hesrt,samples/GSE243981/GSM7697869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM7697870,GSE243981,GSE243981,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,,,normal,luna,,,adult,luna,adult,30–60,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2277,36601,counts,pixel,3.956820644331593,platform_constant,True,H&E,3.956820644331593,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7697870,,,train,hesrt,samples/GSE243981/GSM7697870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM7697870,GSE243981,GSE243981,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,,,normal,luna,,,adult,luna,adult,30–60,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2277,36601,counts,pixel,3.9568206443315925,platform_constant,True,H&E,3.9568206443315925,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7697870,,,train,hesrt,samples/GSE243981/GSM7697870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM7804884,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001103,diaphragm,diaphragm E14.5,primary tissue,,,normal,luna,,control,embryonic,age rule: embryonic day,embryonic,14.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,815,19465,counts,pixel,4.392517514500182,platform_constant,True,H&E,4.392517514500182,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38883818,,GSM7804884,,,val,hesrt,samples/GSE244014/GSM7804884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7804885,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001103,diaphragm,diaphragm E14.5,primary tissue,,,normal,luna,,control,embryonic,age rule: embryonic day,embryonic,14.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,842,19465,counts,pixel,4.392541189910771,platform_constant,True,H&E,4.392541189910771,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38883818,,GSM7804885,,,val,hesrt,samples/GSE244014/GSM7804885,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7804886,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001103,diaphragm,diaphragm E14.5,primary tissue,,,normal,luna,,control,embryonic,age rule: embryonic day,embryonic,14.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,703,19465,counts,pixel,4.525966943520554,platform_constant,True,H&E,4.525966943520554,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38883818,,GSM7804886,,,val,hesrt,samples/GSE244014/GSM7804886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2907,10 +2907,10 @@ GSM7804888,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphr GSM7804889,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001103,diaphragm,diaphragm E14.5,primary tissue,,,perturbation,luna,,CaV1.1 -/-,embryonic,age rule: embryonic day,embryonic,14.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,904,19465,counts,pixel,4.391688413083719,platform_constant,True,H&E,4.391688413083719,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38883818,,GSM7804889,,,val,hesrt,samples/GSE244014/GSM7804889,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7804890,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001103,diaphragm,diaphragm E18.5,primary tissue,,,perturbation,luna,,CaV1.1 -/-,embryonic,age rule: embryonic day,embryonic,18.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1336,19465,counts,pixel,4.530111545340243,platform_constant,True,H&E,4.530111545340243,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38883818,,GSM7804890,,,val,hesrt,samples/GSE244014/GSM7804890,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7804891,GSE244014,GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001103,diaphragm,diaphragm E18.5,primary tissue,,,perturbation,luna,,bCat cKO,embryonic,age rule: embryonic day,embryonic,18.5 embryonic days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2166,19465,counts,pixel,4.531492751773592,platform_constant,True,H&E,4.531492751773592,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38883818,,GSM7804891,,,val,hesrt,samples/GSE244014/GSM7804891,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7806336,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,adult,age rule: age in years,adult,31 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1073,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.499994870678404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806336,,,train,hesrt,samples/GSE244084/GSM7806336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7806337,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,adult,age rule: age in years,adult,31 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,739,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.499994870678404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806337,,,train,hesrt,samples/GSE244084/GSM7806337,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7806338,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,adult,age rule: age in years,adult,31 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1488,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.499994870678404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806338,,,train,hesrt,samples/GSE244084/GSM7806338,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7806339,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,aged,age rule: age in years,aged,71 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,938,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.499994870678404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806339,,,train,hesrt,samples/GSE244084/GSM7806339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.84, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7806336,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,adult,age rule: age in years,adult,31 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1073,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.49999487067840404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806336,,,train,hesrt,samples/GSE244084/GSM7806336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7806337,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,adult,age rule: age in years,adult,31 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,739,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.49999487067840404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806337,,,train,hesrt,samples/GSE244084/GSM7806337,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7806338,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,adult,age rule: age in years,adult,31 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1488,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.49999487067840404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806338,,,train,hesrt,samples/GSE244084/GSM7806338,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7806339,GSE244084,GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adrenal Gland,primary tissue,,,normal,luna,,normal,aged,age rule: age in years,aged,71 years,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,938,36601,counts,pixel,0.4716981132075472,platform_constant,True,H&E,0.49999487067840404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37953901,,GSM7806339,,,train,hesrt,samples/GSE244084/GSM7806339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.84, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7818789,GSE244536,GSE244536,Deterministic reprogramming of neutrophils in tumors,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,PDAC tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4410,32285,counts,um,1.0,verified,True,"fluorescence: single channel, grayscale (heuristic)",4.031861960080278,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,the stain should be stated,38207030,,GSM7818789,,,test,sda-all,samples/GSE244536/GSM7818789,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 0.71}",, GSM7818790,GSE244536,GSE244536,Deterministic reprogramming of neutrophils in tumors,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,PDAC tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4653,32285,counts,um,1.0,verified,True,"fluorescence: single channel, grayscale (heuristic)",4.036343811594965,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),registration is correct; should be marked as non-H&E,38207030,,GSM7818790,,,test,sda-all,samples/GSE244536/GSM7818790,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.6000000000000001, ""life_stage"": 0.74}",organ,low_confidence_annotation GSM7818791,GSE244536,GSE244536,Deterministic reprogramming of neutrophils in tumors,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,PDAC tumor,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3402,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.037730886127165,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),registration is correct; the non-H&E modality should be stated,38207030,,GSM7818791,,,test,sda-all,samples/GSE244536/GSM7818791,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 0.87, ""disease_status"": 0.99, ""uberon"": 0.52, ""life_stage"": 0.92}",uberon,low_confidence_annotation @@ -2923,21 +2923,21 @@ GSM7823014,GSE244641,GSE244641,Recirculating regulatory T cells mediate thymic r GSM7823015,GSE244641,GSE244641,Recirculating regulatory T cells mediate thymic regeneration [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,thymus,luna,UBERON:0002370,thymus,thymus,primary tissue,,,normal,luna,,treatment: untreated; time point: day7; age: 18-month old,aged,age rule: age with unit,aged,18 months,unknown,,GSE244641:GSM7823015,GSM7823015,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1443,32285,counts,pixel,0.970873786407767,platform_constant,True,H&E,0.970873786407767,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39892391,,GSM7823015,,,train,hesrt,samples/GSE244641/GSM7823015,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7823248,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1243,31053,counts,pixel,0.4659375412662524,platform_constant,True,H&E,0.5000044359891271,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823248,,,train,hesrt,samples/GSE244650/GSM7823248,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM7823249,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Wild type,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1035,31053,counts,pixel,0.4673690398864138,platform_constant,True,H&E,0.4999942354791313,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823249,,,train,hesrt,samples/GSE244650/GSM7823249,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7823250,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1290,31053,counts,pixel,0.467439281380087,platform_constant,True,H&E,0.4999942251711649,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823250,,,train,hesrt,samples/GSE244650/GSM7823250,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 0.98}",, -GSM7823251,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1616,31053,counts,pixel,0.4672122667052516,platform_constant,True,H&E,0.499985955881765,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823251,,,train,hesrt,samples/GSE244650/GSM7823251,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7823250,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1290,31053,counts,pixel,0.467439281380087,platform_constant,True,H&E,0.49999422517116493,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823250,,,train,hesrt,samples/GSE244650/GSM7823250,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 0.98}",, +GSM7823251,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1616,31053,counts,pixel,0.4672122667052516,platform_constant,True,H&E,0.49998595588176503,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823251,,,train,hesrt,samples/GSE244650/GSM7823251,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7823252,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1642,31053,counts,pixel,0.4656404298486533,platform_constant,True,H&E,0.5000028126831603,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823252,,,train,hesrt,samples/GSE244650/GSM7823252,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 0.89}",, -GSM7823253,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2146,31053,counts,pixel,0.4682439447869478,platform_constant,True,H&E,0.4999981338316194,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823253,,,train,hesrt,samples/GSE244650/GSM7823253,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7823254,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1225,31053,counts,pixel,0.4668532995982375,platform_constant,True,H&E,0.5000040424593418,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823254,,,train,hesrt,samples/GSE244650/GSM7823254,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM7823255,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1312,31053,counts,pixel,0.4734130704920227,platform_constant,True,H&E,0.5000027404461999,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823255,,,train,hesrt,samples/GSE244650/GSM7823255,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",, -GSM7823256,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1053,31053,counts,pixel,0.4683674636591178,platform_constant,True,H&E,0.4999942315294803,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823256,,,train,hesrt,samples/GSE244650/GSM7823256,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM7823253,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2146,31053,counts,pixel,0.46824394478694786,platform_constant,True,H&E,0.49999813383161945,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823253,,,train,hesrt,samples/GSE244650/GSM7823253,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7823254,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1225,31053,counts,pixel,0.46685329959823757,platform_constant,True,H&E,0.5000040424593418,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823254,,,train,hesrt,samples/GSE244650/GSM7823254,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM7823255,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1312,31053,counts,pixel,0.47341307049202275,platform_constant,True,H&E,0.5000027404461999,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823255,,,train,hesrt,samples/GSE244650/GSM7823255,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",, +GSM7823256,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1053,31053,counts,pixel,0.46836746365911786,platform_constant,True,H&E,0.4999942315294803,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823256,,,train,hesrt,samples/GSE244650/GSM7823256,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM7823257,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,913,31053,counts,pixel,0.4676297604809965,platform_constant,True,H&E,0.5000150100322324,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823257,,,train,hesrt,samples/GSE244650/GSM7823257,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM7823258,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Wild type,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1009,31053,counts,pixel,0.467092423491403,platform_constant,True,H&E,0.4999980747806088,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823258,,,train,hesrt,samples/GSE244650/GSM7823258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation +GSM7823258,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Wild type,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1009,31053,counts,pixel,0.46709242349140306,platform_constant,True,H&E,0.49999807478060887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823258,,,train,hesrt,samples/GSE244650/GSM7823258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation GSM7823259,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1431,31053,counts,pixel,0.471669192002209,platform_constant,True,H&E,0.499997217087131,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823259,,,train,hesrt,samples/GSE244650/GSM7823259,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",, -GSM7823260,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1626,31053,counts,pixel,0.4679454520820104,platform_constant,True,H&E,0.5000099095406314,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823260,,,train,hesrt,samples/GSE244650/GSM7823260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.92}",, +GSM7823260,GSE244650,GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,Apex resection,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1626,31053,counts,pixel,0.46794545208201044,platform_constant,True,H&E,0.5000099095406314,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40967223,,GSM7823260,,,train,hesrt,samples/GSE244650/GSM7823260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.92}",, GSM7823491,GSE244659,GSE244659,A diverse network of pericoerulear neurons control arousal states,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Mouse brain LC region,primary tissue,,,normal,luna,,wildtype,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh Frozen,Other,release v3,Pixel-seq,sequencing-based,other,,,cell,59200,27561,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,40335695,,GSM7823491,,,train,sda-all,samples/GSE244659/GSM7823491,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM7823492,GSE244659,GSE244659,A diverse network of pericoerulear neurons control arousal states,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Mouse brain LC region,primary tissue,,,normal,luna,,wildtype,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh Frozen,Other,release v3,Pixel-seq,sequencing-based,other,,,cell,17963,27561,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,40335695,,GSM7823492,,,train,sda-all,samples/GSE244659/GSM7823492,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM7825036,GSE244723,GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0000948,heart,embryonic heart,primary tissue,,,normal,luna,,control,embryonic,age rule: Carnegie stage,embryonic,CS16,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,37,57486,counts,pixel,3.637241489832318,platform_constant,True,H&E,3.637241489832318,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38011284,,GSM7825036,,,train,hesrt,samples/GSE244723/GSM7825036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7825037,GSE244723,GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0000948,heart,embryonic heart,primary tissue,,,normal,luna,,control,embryonic,age rule: Carnegie stage,embryonic,CS16,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,61,57486,counts,pixel,3.585829968458408,platform_constant,True,H&E,3.585829968458408,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38011284,,GSM7825037,,,train,hesrt,samples/GSE244723/GSM7825037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.93}",, +GSM7825037,GSE244723,GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0000948,heart,embryonic heart,primary tissue,,,normal,luna,,control,embryonic,age rule: Carnegie stage,embryonic,CS16,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,61,57486,counts,pixel,3.5858299684584076,platform_constant,True,H&E,3.5858299684584076,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38011284,,GSM7825037,,,train,hesrt,samples/GSE244723/GSM7825037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.93}",, GSM7825038,GSE244723,GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0000948,heart,embryonic heart,primary tissue,,,normal,luna,,control,embryonic,age rule: Carnegie stage,embryonic,CS16,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,59,57486,counts,pixel,3.534890945650585,platform_constant,True,H&E,3.534890945650585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38011284,,GSM7825038,,,train,hesrt,samples/GSE244723/GSM7825038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 0.98}",, GSM7825039,GSE244723,GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0000948,heart,embryonic heart,primary tissue,,,normal,luna,,control,embryonic,age rule: Carnegie stage,embryonic,CS16,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial Transcriptomics,,,spot,60,57486,counts,pixel,3.649330911960079,platform_constant,True,H&E,3.649330911960079,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38011284,,GSM7825039,,,train,hesrt,samples/GSE244723/GSM7825039,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7829909,GSE244803,GSE244803,Spatial transcriptomics of mouse spleens during steady state and malaria infection. [d0_d7_slideseqV2],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,saline control,adult,age rule: age with unit,juvenile,6-12 weeks,unknown,,,,fresh frozen,Fresh frozen,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,42666,22019,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38848213,,GSM7829909,,,train,sda-all,samples/GSE244803/GSM7829909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.87}",, @@ -2951,7 +2951,7 @@ GSM7829916,GSE244803,GSE244803,Spatial transcriptomics of mouse spleens during s GSM7836297,GSE245097+GSE245179,GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0000043,tendon,Tendon + injured area,primary tissue,,,perturbation,luna,,Control (TrkA WT),adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3047,32285,counts,pixel,18.287499981712457,platform_constant,True,H&E,18.287499981712457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38117901,,GSM7836297,,,train,hesrt,samples/GSE245097/GSM7836297,sda-tissue-disease-2.3,"{""organ"": 0.64, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7836298,GSE245097+GSE245179,GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0000043,tendon,Tendon + injured area,primary tissue,,,disease,luna,,Control (TrkA WT),adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2027,32285,counts,pixel,18.287499981712457,platform_constant,True,H&E,18.287499981712457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38117901,,GSM7836298,,,train,hesrt,samples/GSE245097/GSM7836298,sda-tissue-disease-2.3,"{""organ"": 0.49, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 0.97, ""life_stage"": 1.0}",organ;disease_status,low_confidence_annotation GSM7836299,GSE245097+GSE245179,GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0000043,tendon,Tendon + injured area,primary tissue,,,perturbation,luna,,1NMPP1 (TrkA F592A),adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2837,32285,counts,pixel,18.287499981712457,platform_constant,True,H&E,18.287499981712457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38117901,,GSM7836299,,,train,hesrt,samples/GSE245097/GSM7836299,sda-tissue-disease-2.3,"{""organ"": 0.71, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7836300,GSE245097+GSE245179,GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0000043,tendon,Tendon + injured area,primary tissue,,,perturbation,luna,,1NMPP1 (TrkA F592A),adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2751,32285,counts,pixel,18.28749998171248,platform_constant,True,H&E,18.28749998171248,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38117901,,GSM7836300,,,train,hesrt,samples/GSE245097/GSM7836300,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7836300,GSE245097+GSE245179,GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0000043,tendon,Tendon + injured area,primary tissue,,,perturbation,luna,,1NMPP1 (TrkA F592A),adult,age rule: age with unit,adult,12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2751,32285,counts,pixel,18.287499981712482,platform_constant,True,H&E,18.287499981712482,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38117901,,GSM7836300,,,train,hesrt,samples/GSE245097/GSM7836300,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7836929,GSE245111+GSE245112,GSE245111,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Curio],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0002524,mediastinal lymph node,Mediastinal lymph node,primary tissue,,,perturbation,luna,,House dust mite intranasal,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,slide_seq,,,bead,39721,24649,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38374265,,GSM7836929,,,train,sda-all,samples/GSE245111/GSM7836929,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7836930,GSE245111+GSE245112,GSE245111,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Curio],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0002524,mediastinal lymph node,Mediastinal lymph node,primary tissue,,,disease,luna,,House dust mite intranasal,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,slide_seq,,,bead,30242,25343,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38374265,,GSM7836930,,,train,sda-all,samples/GSE245111/GSM7836930,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7836931,GSE245111+GSE245112,GSE245111,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Curio],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0002524,mediastinal lymph node,Mediastinal lymph node,primary tissue,,,perturbation,luna,,House dust mite intranasal,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,slide_seq,,,bead,55186,22391,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,38374265,,GSM7836931,,,train,sda-all,samples/GSE245111/GSM7836931,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -2966,8 +2966,8 @@ GSM7840103,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbi GSM7840104,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002114,duodenum,Duodenum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3724,32285,counts,pixel,5.492008841412778,platform_constant,True,H&E,5.492008841412778,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840104,,,val,hesrt,samples/GSE245274/GSM7840104,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840105,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002114,duodenum,Duodenum,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4039,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840105,,,val,hesrt,samples/GSE245274/GSM7840105,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840106,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002114,duodenum,Duodenum,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3779,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840106,,,val,hesrt,samples/GSE245274/GSM7840106,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7840107,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3795,32285,counts,pixel,5.492041719326116,platform_constant,True,H&E,5.492041719326116,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840107,,,val,hesrt,samples/GSE245274/GSM7840107,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7840108,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3049,32285,counts,pixel,5.492041719326116,platform_constant,True,H&E,5.492041719326116,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840108,,,val,hesrt,samples/GSE245274/GSM7840108,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7840107,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3795,32285,counts,pixel,5.4920417193261155,platform_constant,True,H&E,5.4920417193261155,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840107,,,val,hesrt,samples/GSE245274/GSM7840107,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7840108,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3049,32285,counts,pixel,5.4920417193261155,platform_constant,True,H&E,5.4920417193261155,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840108,,,val,hesrt,samples/GSE245274/GSM7840108,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840109,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3616,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840109,,,val,hesrt,samples/GSE245274/GSM7840109,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7840110,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4639,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840110,,,val,hesrt,samples/GSE245274/GSM7840110,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840111,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2761,32285,counts,pixel,5.492041719326132,platform_constant,True,H&E,5.492041719326132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840111,,,val,hesrt,samples/GSE245274/GSM7840111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -2979,7 +2979,7 @@ GSM7840116,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbi GSM7840117,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2816,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840117,,,val,hesrt,samples/GSE245274/GSM7840117,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840118,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3354,32285,counts,pixel,5.492041719326099,platform_constant,True,H&E,5.492041719326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840118,,,val,hesrt,samples/GSE245274/GSM7840118,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840119,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2930,32285,counts,pixel,5.492041719326132,platform_constant,True,H&E,5.492041719326132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840119,,,val,hesrt,samples/GSE245274/GSM7840119,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7840120,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3153,32285,counts,pixel,5.492041719326116,platform_constant,True,H&E,5.492041719326116,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840120,,,val,hesrt,samples/GSE245274/GSM7840120,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7840120,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3153,32285,counts,pixel,5.4920417193261155,platform_constant,True,H&E,5.4920417193261155,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840120,,,val,hesrt,samples/GSE245274/GSM7840120,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840121,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2568,32285,counts,pixel,5.492008841412778,platform_constant,True,H&E,5.492008841412778,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840121,,,val,hesrt,samples/GSE245274/GSM7840121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840122,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2691,32285,counts,pixel,5.492008841412744,platform_constant,True,H&E,5.492008841412744,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840122,,,val,hesrt,samples/GSE245274/GSM7840122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7840123,GSE245274+GSE245316,GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2434,32285,counts,pixel,5.492041719326132,platform_constant,True,H&E,5.492041719326132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567686,,GSM7840123,,,val,hesrt,samples/GSE245274/GSM7840123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -3023,7 +3023,7 @@ GSM7843144,GSE205449+GSE245469,GSE245469,Multimodal spatiotemporal transcriptomi GSM7843145,GSE205449+GSE245469,GSE245469,Multimodal spatiotemporal transcriptomic resolution of embryonic palate osteogenesis [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,luna,UBERON:0000033,head,Whole head,primary tissue,,,normal,luna,,Wild-type,embryonic,luna,embryonic,15.5 days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,989,19465,counts,pixel,5.600000180991986,platform_constant,True,H&E,5.600000180991986,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37709732,,GSM7843145,,,train,hesrt,samples/GSE245469/GSM7843145,sda-tissue-disease-2.3,"{""organ"": 0.5700000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM7843146,GSE205449+GSE245469,GSE245469,Multimodal spatiotemporal transcriptomic resolution of embryonic palate osteogenesis [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,luna,UBERON:0000033,head,Whole head,primary tissue,,,normal,luna,,Wild-type,embryonic,luna,embryonic,15.5 days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1952,19465,counts,pixel,4.095348627527462,platform_constant,True,H&E,4.095348627527462,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37709732,,GSM7843146,,,train,hesrt,samples/GSE245469/GSM7843146,sda-tissue-disease-2.3,"{""organ"": 0.74, ""sample_kind"": 0.85, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM7845285,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4237-1 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,TC vehicle,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,991,68886,counts,pixel,4.03355418778956,platform_constant,True,H&E,4.03355418778956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845285,,,test,hesrt,samples/GSE245582/GSM7845285,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.99}",, -GSM7845286,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4237-1 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,TC vehicle,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1237,68886,counts,pixel,4.09713026904724,platform_constant,True,H&E,4.09713026904724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845286,,,test,hesrt,samples/GSE245582/GSM7845286,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, +GSM7845286,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4237-1 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,TC vehicle,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1237,68886,counts,pixel,4.0971302690472395,platform_constant,True,H&E,4.0971302690472395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845286,,,test,hesrt,samples/GSE245582/GSM7845286,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM7845287,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4237-1 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T0 untreated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2692,68886,counts,pixel,4.04061788949363,platform_constant,True,H&E,4.04061788949363,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845287,,,test,hesrt,samples/GSE245582/GSM7845287,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM7845288,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4237-1 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T0 untreated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2493,68886,counts,pixel,4.061810310498913,platform_constant,True,H&E,4.061810310498913,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845288,,,test,hesrt,samples/GSE245582/GSM7845288,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM7845289,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4237-1 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T1 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,288,68886,counts,pixel,4.03355418778956,platform_constant,True,H&E,4.03355418778956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845289,,,test,hesrt,samples/GSE245582/GSM7845289,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -3044,12 +3044,12 @@ GSM7845303,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and GSM7845304,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4007 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T2 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1134,68886,counts,pixel,4.0945917112683246,platform_constant,True,H&E,4.0945917112683246,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845304,,,test,hesrt,samples/GSE245582/GSM7845304,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM7845305,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4007 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T3 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1935,68886,counts,pixel,4.046026527358457,platform_constant,True,H&E,4.046026527358457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845305,,,test,hesrt,samples/GSE245582/GSM7845305,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM7845306,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4007 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T3 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1808,68886,counts,pixel,4.046909343671223,platform_constant,True,H&E,4.046909343671223,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845306,,,test,hesrt,samples/GSE245582/GSM7845306,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.99}",, -GSM7845307,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4007 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T4 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1574,68886,counts,pixel,4.082008914315559,platform_constant,True,H&E,4.082008914315559,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845307,,,test,hesrt,samples/GSE245582/GSM7845307,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.98}",, +GSM7845307,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4007 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T4 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1574,68886,counts,pixel,4.0820089143155585,platform_constant,True,H&E,4.0820089143155585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845307,,,test,hesrt,samples/GSE245582/GSM7845307,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.98}",, GSM7845308,GSE245582,GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,,,WM4007 melanoma PDX,xenograft,MONDO:0005105,melanoma,disease,luna,melanoma,T4 dabrafenib/trametinib,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1960,68886,counts,pixel,4.094260450555226,platform_constant,True,H&E,4.094260450555226,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39700408,10.1158/0008-5472.can-24-0690,GSM7845308,,,test,hesrt,samples/GSE245582/GSM7845308,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.9500000000000001}",, GSM7845914,GSE245620,GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,MONDO:0013433;MONDO:0005154,primary sclerosing cholangitis;liver disorder,disease,luna,Primary sclerosing cholangitis (PSC),,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3118,36601,counts,pixel,0.303951367781155,platform_constant,True,H&E,0.5000052358599784,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7845914,,,train,hesrt,samples/GSE245620/GSM7845914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.97}",, -GSM7845915,GSE245620,GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,MONDO:0013433;MONDO:0005154,primary sclerosing cholangitis;liver disorder,disease,luna,Primary sclerosing cholangitis (PSC),,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2670,36601,counts,pixel,0.303030303030303,platform_constant,True,H&E,0.500000955148153,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7845915,,,train,hesrt,samples/GSE245620/GSM7845915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 0.48}",life_stage,low_confidence_annotation +GSM7845915,GSE245620,GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,MONDO:0013433;MONDO:0005154,primary sclerosing cholangitis;liver disorder,disease,luna,Primary sclerosing cholangitis (PSC),,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2670,36601,counts,pixel,0.30303030303030304,platform_constant,True,H&E,0.500000955148153,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7845915,,,train,hesrt,samples/GSE245620/GSM7845915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 0.48}",life_stage,low_confidence_annotation GSM7845916,GSE245620,GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,MONDO:0013433;MONDO:0005154,primary sclerosing cholangitis;liver disorder,disease,luna,Primary sclerosing cholangitis (PSC),,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3322,36601,counts,pixel,0.303951367781155,platform_constant,True,H&E,0.5000054253234683,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7845916,,,train,hesrt,samples/GSE245620/GSM7845916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 0.76}",, -GSM7845917,GSE245620,GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,MONDO:0013433;MONDO:0005154,primary sclerosing cholangitis;liver disorder,disease,luna,Primary sclerosing cholangitis (PSC),,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3174,36601,counts,pixel,0.303951367781155,platform_constant,True,H&E,0.4999887510157451,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7845917,,,train,hesrt,samples/GSE245620/GSM7845917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.9500000000000001}",, +GSM7845917,GSE245620,GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Adult Liver,primary tissue,MONDO:0013433;MONDO:0005154,primary sclerosing cholangitis;liver disorder,disease,luna,Primary sclerosing cholangitis (PSC),,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3174,36601,counts,pixel,0.303951367781155,platform_constant,True,H&E,0.49998875101574514,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38199298,,GSM7845917,,,train,hesrt,samples/GSE245620/GSM7845917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.9500000000000001}",, GSM7847146,GSE245704,GSE245704,Spatial transcriptomic analysis of Gastric adenocarcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric adenocarcinoma,tumour tissue,MONDO:0005036,gastric adenocarcinoma,disease,luna,Gastric adenocarcinoma,,not stated,luna,not stated,,unknown,,GSE245704:GA48269,GA48269,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2560,18085,counts,pixel,14.449842842140209,platform_constant,True,H&E,14.449842842140209,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39021298,,GSM7847146,,,train,hesrt,samples/GSE245704/GSM7847146,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7850822,GSE245908+GSE245909,GSE245908,Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Hepatocellular Carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2261,36601,counts,pixel,5.66727241874641,platform_constant,True,H&E,5.66727241874641,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38350444;41270217,,GSM7850822,,,train,hesrt,samples/GSE245908/GSM7850822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7850823,GSE245908+GSE245909,GSE245908,Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Hepatocellular Carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1987,36601,counts,pixel,5.8763632677981406,platform_constant,True,H&E,5.8763632677981406,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38350444;41270217,,GSM7850823,,,train,hesrt,samples/GSE245908/GSM7850823,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3064,7 +3064,7 @@ GSM7869828,GSE246495,GSE246495,Spatial transcriptomics in human mid luteal endom GSM7870036,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,disease,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:0259,0259,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3340,36601,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,38216737,,GSM7870036,,,train,sda-all,samples/GSE246518/GSM7870036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7870037,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,disease,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:0259,0259,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3601,36601,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,38216737,,GSM7870037,,,train,sda-all,samples/GSE246518/GSM7870037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7870038,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,normal,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:0011,0011,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1828,36601,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,38216737,,GSM7870038,,,train,sda-all,samples/GSE246518/GSM7870038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.08, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7870039,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,disease,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:patient_1218,patient_1218,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1306,36601,counts,pixel,13.282759668653624,platform_constant,True,H&E,13.282759668653624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38216737,10.1038/s41556-023-01315-5,GSM7870039,,,train,hesrt,samples/GSE246518/GSM7870039,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.23, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7870039,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,disease,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:patient_1218,patient_1218,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1306,36601,counts,pixel,13.282759668653625,platform_constant,True,H&E,13.282759668653625,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38216737,10.1038/s41556-023-01315-5,GSM7870039,,,train,hesrt,samples/GSE246518/GSM7870039,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.23, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7870040,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,normal,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:210727,210727,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3736,36601,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,38216737,,GSM7870040,,,train,sda-all,samples/GSE246518/GSM7870040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.16, ""uberon"": 0.97, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM7870041,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,disease,luna,,BRCA2,not stated,luna,not stated,,female,female,GSE246518:patient_0006,patient_0006,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3617,36601,counts,pixel,15.174017668690784,platform_constant,True,H&E,15.174017668690784,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38216737,10.1038/s41556-023-01315-5,GSM7870041,,,train,hesrt,samples/GSE246518/GSM7870041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.24, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7870042,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0001911,mammary gland,Mammary gland,primary tissue,,,normal,luna,,Normal,not stated,luna,not stated,,female,female,GSE246518:0059,0059,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3305,36601,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,38216737,,GSM7870042,,,train,sda-all,samples/GSE246518/GSM7870042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -3075,7 +3075,7 @@ GSM7870046,GSE246518,GSE246518,Spatial transcriptomics sequencing profiles of hu GSM7871985,GSE246584,GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Primary p53/H3.3K27M diffuse midline glioma-bearing mouse brain,tumour tissue,MONDO:0021042;MONDO:1011336,"glioma;nervous system disorder, non-human animal",disease,luna,,NestinTVA; p53FL/FL; H3f3aloxP-Stop-loxP-K27M-Tag/+;AtmFL/+,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,268046,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999925222033039,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,37904990,,GSM7871985,,,train,sda-all,samples/GSE246584/GSM7871985,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7871986,GSE246584,GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Primary p53/H3.3K27M diffuse midline glioma-bearing mouse brain,tumour tissue,MONDO:0021042;MONDO:1011336,"glioma;nervous system disorder, non-human animal",disease,luna,,10 Gy x 3 focal brain irradiation,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,275571,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000027250926531,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,37904990,,GSM7871986,,,train,sda-all,samples/GSE246584/GSM7871986,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7871987,GSE246584,GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Primary p53/H3.3K27M diffuse midline glioma-bearing mouse brain,tumour tissue,MONDO:0021042;MONDO:1011336,"glioma;nervous system disorder, non-human animal",disease,luna,,NestinTVA; p53FL/FL; H3f3aloxP-Stop-loxP-K27M-Tag/+;AtmFL/FL,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,201816,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999925222033039,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,37904990,,GSM7871987,,,train,sda-all,samples/GSE246584/GSM7871987,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7871988,GSE246584,GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Primary p53/H3.3K27M diffuse midline glioma-bearing mouse brain,tumour tissue,MONDO:0021042;MONDO:1011336,"glioma;nervous system disorder, non-human animal",disease,luna,,10 Gy x 3 focal brain irradiation,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44941,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917314370762,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,37904990,,GSM7871988,,,train,sda-all,samples/GSE246584/GSM7871988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7871988,GSE246584,GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Primary p53/H3.3K27M diffuse midline glioma-bearing mouse brain,tumour tissue,MONDO:0021042;MONDO:1011336,"glioma;nervous system disorder, non-human animal",disease,luna,,10 Gy x 3 focal brain irradiation,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44941,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999173143707626,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,37904990,,GSM7871988,,,train,sda-all,samples/GSE246584/GSM7871988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7876407,GSE246762+GSE246770,GSE246770,Profiling of murine tumors initiated by transplantation of engineered prostate organoids,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,xenograft,MONDO:0005070,neoplasm,disease,luna,,Rb1/Trp53 KO; cMyc overexpressing (RPM),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1048,19465,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,39394434,,GSM7876407,,,train,sda-all,samples/GSE246770/GSM7876407,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.84, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM7876408,GSE246762+GSE246770,GSE246770,Profiling of murine tumors initiated by transplantation of engineered prostate organoids,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,xenograft,MONDO:0005070,neoplasm,disease,luna,,Rb1/Trp53 KO; cMyc overexpressing (RPM),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1044,19465,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,39394434,,GSM7876408,,,train,sda-all,samples/GSE246770/GSM7876408,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.91, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7876409,GSE246762+GSE246770,GSE246770,Profiling of murine tumors initiated by transplantation of engineered prostate organoids,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,xenograft,MONDO:0005070,neoplasm,disease,luna,,Rb1/Trp53 KO; cMyc overexpressing (RPM),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1702,19465,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,39394434,,GSM7876409,,,train,sda-all,samples/GSE246770/GSM7876409,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.71, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.84}",, @@ -3113,24 +3113,24 @@ GSM7905584,GSE248077,GSE248077,Perturbed liver gene zonation in a mouse model of GSM7905760,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2611,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.087568027069517,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905760,,,train,sda-all,samples/GSE248082/GSM7905760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7905761,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4721,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.170410231199979,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905761,,,train,sda-all,samples/GSE248082/GSM7905761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7905762,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4650,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.9557455975757967,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905762,,,train,sda-all,samples/GSE248082/GSM7905762,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7905763,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4430,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.865027623311577,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905763,,,train,sda-all,samples/GSE248082/GSM7905763,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7905763,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4430,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8650276233115766,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905763,,,train,sda-all,samples/GSE248082/GSM7905763,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7905765,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4235,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.9458412052593417,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905765,,,train,sda-all,samples/GSE248082/GSM7905765,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7905767,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4458,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.177569980258376,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905767,,,train,sda-all,samples/GSE248082/GSM7905767,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7905768,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4653,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.613559617619623,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905768,,,train,sda-all,samples/GSE248082/GSM7905768,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM7905768,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0002771,idiopathic pulmonary fibrosis;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4653,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.6135596176196225,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM7905768,,,train,sda-all,samples/GSE248082/GSM7905768,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8087031,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Normal human lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4332,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.906857169053641,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM8087031,,,train,sda-all,samples/GSE248082/GSM8087031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8087032,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Normal human lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2944,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.592366117860611,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM8087032,,,train,sda-all,samples/GSE248082/GSM8087032,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8087033,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Normal human lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3393,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.7606806119995615,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM8087033,,,train,sda-all,samples/GSE248082/GSM8087033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8087034,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Normal human lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1798,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.089491304762761,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM8087034,,,train,sda-all,samples/GSE248082/GSM8087034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8087035,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Normal human lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4547,36601,counts,um,1.0,verified,True,H&E,4.071984693334073,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM8087035,,,train,sda-all,samples/GSE248082/GSM8087035,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8087038,GSE248082,GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Idiopathic pulmonary fibrosis,primary tissue,MONDO:0800504;MONDO:0800497;MONDO:0002771,idiopathic pulmonary fibrosis;interstitial lung disease 2;pulmonary fibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2753,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.118531418106387,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39978854,,GSM8087038,,,train,sda-all,samples/GSE248082/GSM8087038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7908359,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,control,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1302,36601,counts,pixel,3.898181905501093,platform_constant,True,H&E,3.898181905501093,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908359,,,test,hesrt,samples/GSE248205/GSM7908359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7908359,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,control,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1302,36601,counts,pixel,3.8981819055010924,platform_constant,True,H&E,3.8981819055010924,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908359,,,test,hesrt,samples/GSE248205/GSM7908359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908360,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,control,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2290,36601,counts,pixel,3.970200272613379,platform_constant,True,H&E,3.970200272613379,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908360,,,test,hesrt,samples/GSE248205/GSM7908360,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908361,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0007699,Hashimoto thyroiditis,disease,luna,Hashimoto's thyroiditis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2041,36601,counts,pixel,4.194545574006121,platform_constant,True,H&E,4.194545574006121,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908361,,,test,hesrt,samples/GSE248205/GSM7908361,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908362,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0007699,Hashimoto thyroiditis,disease,luna,Hashimoto's thyroiditis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2625,36601,counts,pixel,4.363636433454573,platform_constant,True,H&E,4.363636433454573,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908362,,,test,hesrt,samples/GSE248205/GSM7908362,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908363,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0007699,Hashimoto thyroiditis,disease,luna,Hashimoto's thyroiditis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2144,36601,counts,pixel,4.363636433454573,platform_constant,True,H&E,4.363636433454573,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908363,,,test,hesrt,samples/GSE248205/GSM7908363,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908364,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0005364,Graves disease,disease,luna,Graves' disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2279,36601,counts,pixel,4.363636433454573,platform_constant,True,H&E,4.363636433454573,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908364,,,test,hesrt,samples/GSE248205/GSM7908364,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908365,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0005364,Graves disease,disease,luna,Graves' disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2171,36601,counts,pixel,4.245544649555644,platform_constant,True,H&E,4.245544649555644,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908365,,,test,hesrt,samples/GSE248205/GSM7908365,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7908366,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0005364,Graves disease,disease,luna,Graves' disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2133,36601,counts,pixel,3.898181905501093,platform_constant,True,H&E,3.898181905501093,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908366,,,test,hesrt,samples/GSE248205/GSM7908366,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7908366,GSE248205,GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,MONDO:0005364,Graves disease,disease,luna,Graves' disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2133,36601,counts,pixel,3.8981819055010924,platform_constant,True,H&E,3.8981819055010924,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003267,,GSM7908366,,,test,hesrt,samples/GSE248205/GSM7908366,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7908792,GSE248230,GSE248230,Generation of human neuromusculoskeletal tri-tissue organoids [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,organoids,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,510,36601,counts,pixel,4.011809216169323,platform_constant,True,H&E,4.011809216169323,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7908792,,,train,hesrt,samples/GSE248230/GSM7908792,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": NaN, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7911864,GSE248347,GSE248347,Spatial transcriptomics to dissect molecular signature of cardiac fibroblasts in experimental autoimmune myocarditis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,d0,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1978,32285,counts,pixel,5.141131218215499,platform_constant,True,H&E,5.141131218215499,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41341993,,GSM7911864,,,train,hesrt,samples/GSE248347/GSM7911864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 0.84}",, GSM7911866,GSE248347,GSE248347,Spatial transcriptomics to dissect molecular signature of cardiac fibroblasts in experimental autoimmune myocarditis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0022519,autoimmune myocarditis,disease,mondo_predicate,,d19,embryonic,luna,embryonic,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1811,32285,counts,pixel,4.475135310247175,platform_constant,True,H&E,4.475135310247175,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41341993,,GSM7911866,,,train,hesrt,samples/GSE248347/GSM7911866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 0.15}",disease_status;life_stage,low_confidence_annotation @@ -3148,7 +3148,7 @@ GSM7916293,GSE248517,GSE248517,Seeing the whole transcriptomics picture: Spatial GSM7916581,GSE248545,GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001885,dentate gyrus of hippocampal formation,Dentate gyrus,primary tissue,,,normal,luna,,control,adult,age rule: age in years,adult,42 years,male,male,GSE248545:GSM7916581,GSM7916581,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4431,36601,counts,pixel,4.129011939409985,platform_constant,True,H&E,4.129011939409985,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39414359,,GSM7916581,,,test,hesrt,samples/GSE248545/GSM7916581,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7916582,GSE248545,GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001885,dentate gyrus of hippocampal formation,Dentate gyrus,primary tissue,,,normal,luna,,control,adult,age rule: age in years,adult,43 years,male,male,GSE248545:GSM7916582,GSM7916582,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2996,36601,counts,pixel,3.9824561797772193,platform_constant,True,H&E,3.9824561797772193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39414359,,GSM7916582,,,test,hesrt,samples/GSE248545/GSM7916582,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.85, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7916583,GSE248545,GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001885,dentate gyrus of hippocampal formation,Dentate gyrus,primary tissue,,,normal,luna,,control,adult,age rule: age in years,adult,26 years,male,male,GSE248545:GSM7916583,GSM7916583,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3667,36601,counts,pixel,4.087719196870186,platform_constant,True,H&E,4.087719196870186,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39414359,,GSM7916583,,,test,hesrt,samples/GSE248545/GSM7916583,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7916584,GSE248545,GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001885,dentate gyrus of hippocampal formation,Dentate gyrus,primary tissue,,,normal,luna,,control,adult,age rule: age in years,adult,21 years,male,male,GSE248545:GSM7916584,GSM7916584,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3129,36601,counts,pixel,3.981484378417564,platform_constant,True,H&E,3.981484378417564,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39414359,,GSM7916584,,,test,hesrt,samples/GSE248545/GSM7916584,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7916584,GSE248545,GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001885,dentate gyrus of hippocampal formation,Dentate gyrus,primary tissue,,,normal,luna,,control,adult,age rule: age in years,adult,21 years,male,male,GSE248545:GSM7916584,GSM7916584,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3129,36601,counts,pixel,3.9814843784175635,platform_constant,True,H&E,3.9814843784175635,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39414359,,GSM7916584,,,test,hesrt,samples/GSE248545/GSM7916584,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7917894,GSE248608+GSE248610,GSE248608,Spatial Multiomics Reveals Metabolic Reprogramming and Calcification Characteristics of Diabetic Macroangiopathy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001537,anterior tibial artery,Anterior tibial artery,primary tissue,MONDO:0005015;MONDO:0002123,diabetes mellitus;calcinosis,disease,luna,diabetic macroangiopathy,calcified,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1786,37487,counts,pixel,4.476502823919202,platform_constant,True,H&E,4.476502823919202,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39395983,,GSM7917894,,,train,hesrt,samples/GSE248608/GSM7917894,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7917895,GSE248608+GSE248610,GSE248608,Spatial Multiomics Reveals Metabolic Reprogramming and Calcification Characteristics of Diabetic Macroangiopathy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001537,anterior tibial artery,Anterior tibial artery,primary tissue,MONDO:0005015;MONDO:0002123,diabetes mellitus;calcinosis,disease,luna,diabetic macroangiopathy,calcified,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1294,36601,counts,pixel,3.970959269348189,platform_constant,True,H&E,3.970959269348189,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39395983,,GSM7917895,,,train,hesrt,samples/GSE248608/GSM7917895,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7917896,GSE248608+GSE248610,GSE248608,Spatial Multiomics Reveals Metabolic Reprogramming and Calcification Characteristics of Diabetic Macroangiopathy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001537,anterior tibial artery,Anterior tibial artery,primary tissue,MONDO:0005015;MONDO:0002123,diabetes mellitus;calcinosis,disease,luna,diabetic macroangiopathy,calcified,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1644,36601,counts,pixel,4.07437178660968,platform_constant,True,H&E,4.07437178660968,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39395983,,GSM7917896,,,train,hesrt,samples/GSE248608/GSM7917896,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, @@ -3158,9 +3158,9 @@ GSM7917899,GSE248608+GSE248610,GSE248608,Spatial Multiomics Reveals Metabolic Re GSM7918345,GSE248646,GSE248646,Spatial Gene Expression in the Adult Rat Patellar Tendon,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,other,luna,UBERON:0003676,patellar ligament,Patellar tendon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2179,25399,counts,pixel,0.5847853223158802,platform_constant,True,H&E,0.5847853223158802,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7918345,,,train,hesrt,samples/GSE248646/GSM7918345,sda-tissue-disease-2.4,"{""organ"": 0.54, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.73, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM7918346,GSE248646,GSE248646,Spatial Gene Expression in the Adult Rat Patellar Tendon,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,other,luna,UBERON:0003676,patellar ligament,Patellar tendon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1624,25399,counts,pixel,0.5847853223158802,platform_constant,True,H&E,0.5847853223158802,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7918346,,,train,hesrt,samples/GSE248646/GSM7918346,sda-tissue-disease-2.4,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7923470,GSE248953,GSE248953,Cellular Heterogeneity of Pluripotent Stem Cell Derived Cardiomyocyte Grafts is Mechanistically Linked to Treatable Arrhythmias,Homo sapiens,9606,human,Homo sapiens;Sus scrofa,9606;9823,,False,True,GEO organism field,"Homo sapiens -Sus scrofa",,heart,luna,UBERON:0000948,heart,heart,cell culture,MONDO:0007263,cardiac rhythm disease,disease,mondo_predicate (Luna: perturbation),,retinoic acid treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2817,65446,counts,um,1.0,verified,True,H&E-like (heuristic),3.915186962150532,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM7923470,,,train,sda-all,samples/GSE248953/GSM7923470,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, +Sus scrofa",,heart,luna,UBERON:0000948,heart,heart,cell culture,MONDO:0007263,cardiac rhythm disease,disease,mondo_predicate (Luna: perturbation),,retinoic acid treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2817,65446,counts,um,1.0,verified,True,H&E-like (heuristic),3.9151869621505315,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM7923470,,,train,sda-all,samples/GSE248953/GSM7923470,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM7923471,GSE248953,GSE248953,Cellular Heterogeneity of Pluripotent Stem Cell Derived Cardiomyocyte Grafts is Mechanistically Linked to Treatable Arrhythmias,Homo sapiens,9606,human,Homo sapiens;Sus scrofa,9606;9823,,False,True,GEO organism field,"Homo sapiens -Sus scrofa",,heart,luna,UBERON:0000948,heart,heart,cell culture,MONDO:0005267,heart disorder,disease,mondo_predicate,,standard treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2742,65446,counts,um,1.0,verified,True,H&E-like (heuristic),3.8650725659718415,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM7923471,,,train,sda-all,samples/GSE248953/GSM7923471,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.7000000000000001, ""disease_status"": 0.39, ""uberon"": 0.64, ""life_stage"": 0.97}",disease_status,low_confidence_annotation +Sus scrofa",,heart,luna,UBERON:0000948,heart,heart,cell culture,MONDO:0005267,heart disorder,disease,mondo_predicate,,standard treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2742,65446,counts,um,1.0,verified,True,H&E-like (heuristic),3.8650725659718423,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM7923471,,,train,sda-all,samples/GSE248953/GSM7923471,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.7000000000000001, ""disease_status"": 0.39, ""uberon"": 0.64, ""life_stage"": 0.97}",disease_status,low_confidence_annotation GSM7926970,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_ADM_D2_Rep1,adult,age rule: age with unit,adult,28 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2764,19465,counts,pixel,4.131902457249005,platform_constant,True,H&E,4.131902457249005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926970,,,train,hesrt,samples/GSE249121/GSM7926970,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7926971,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_ADM_D2_Rep2,adult,age rule: age with unit,adult,20 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2386,19465,counts,pixel,4.11552959065595,platform_constant,True,H&E,4.11552959065595,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926971,,,train,hesrt,samples/GSE249121/GSM7926971,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7926972,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_ADM_D4_Rep2,adult,age rule: age with unit,adult,24 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3102,19465,counts,pixel,4.025693156905992,platform_constant,True,H&E,4.025693156905992,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926972,,,train,hesrt,samples/GSE249121/GSM7926972,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3170,7 +3170,7 @@ GSM7926975,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal GSM7926976,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_Ctrl_D2_Rep1,adult,age rule: age with unit,adult,10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2979,19465,counts,pixel,4.08603943771149,platform_constant,True,H&E,4.08603943771149,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926976,,,train,hesrt,samples/GSE249121/GSM7926976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7926977,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_Ctrl_D2_Rep2,adult,age rule: age with unit,adult,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2784,19465,counts,pixel,4.110544841703988,platform_constant,True,H&E,4.110544841703988,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926977,,,train,hesrt,samples/GSE249121/GSM7926977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.51, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7926978,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_Ctrl_D4_Rep1,adult,age rule: age with unit,adult,8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3757,19465,counts,pixel,4.1155295906559415,platform_constant,True,H&E,4.1155295906559415,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926978,,,train,hesrt,samples/GSE249121/GSM7926978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM7926979,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_Ctrl_D7_Rep1,adult,age rule: age with unit,adult,8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3533,19465,counts,pixel,4.111147311401672,platform_constant,True,H&E,4.111147311401672,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926979,,,train,hesrt,samples/GSE249121/GSM7926979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM7926979,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_AK_Ctrl_D7_Rep1,adult,age rule: age with unit,adult,8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3533,19465,counts,pixel,4.1111473114016714,platform_constant,True,H&E,4.1111473114016714,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926979,,,train,hesrt,samples/GSE249121/GSM7926979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM7926980,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_Caer_ADM_D2_Rep1,adult,age rule: age with unit,juvenile,6 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1849,19465,counts,pixel,4.1367300322727045,platform_constant,True,H&E,4.1367300322727045,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926980,,,train,hesrt,samples/GSE249121/GSM7926980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7926981,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_Caer_ADM_D2_Rep2,adult,age rule: age with unit,juvenile,6 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1030,19465,counts,pixel,4.201300739219314,platform_constant,True,H&E,4.201300739219314,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926981,,,train,hesrt,samples/GSE249121/GSM7926981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7926982,GSE249121+GSE249143,GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,perturbation,luna,,Panc_Caer_ADM_D4_Rep1,adult,age rule: age with unit,juvenile,6 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1697,19465,counts,pixel,4.095485978854921,platform_constant,True,H&E,4.095485978854921,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156071,,GSM7926982,,,train,hesrt,samples/GSE249121/GSM7926982,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3185,10 +3185,10 @@ GSM7932817,GSE249279,GSE249279,Systems-based identification of the Hippo pathway GSM7932818,GSE249279,GSE249279,Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,Scleroderma skin,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,907,33538,counts,um,1.0,verified,True,H&E,5.029370789652315,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38172207;40164604;42124727,,GSM7932818,,,train,sda-all,samples/GSE249279/GSM7932818,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.34, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM7932819,GSE249279,GSE249279,Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,Scleroderma skin,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,841,33538,counts,um,1.0,verified,True,H&E,4.997927494858994,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38172207;40164604;42124727,,GSM7932819,,,train,sda-all,samples/GSE249279/GSM7932819,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM7932820,GSE249279,GSE249279,Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,Scleroderma skin,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,951,33538,counts,um,1.0,verified,True,H&E,5.037297735402497,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38172207;40164604;42124727,,GSM7932820,,,train,sda-all,samples/GSE249279/GSM7932820,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.49, ""life_stage"": 0.99}",uberon,low_confidence_annotation -GSM7946801,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2664,55357,counts,um,1.0,verified,True,H&E,4.298604337457824,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946801,,,val,sda-all,samples/GSE249403/GSM7946801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM7946801,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2664,55357,counts,um,1.0,verified,True,H&E,4.2986043374578236,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946801,,,val,sda-all,samples/GSE249403/GSM7946801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7946802,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2692,55357,counts,um,1.0,verified,True,H&E,4.296879287066082,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946802,,,val,sda-all,samples/GSE249403/GSM7946802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM7946803,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2587,55357,counts,um,1.0,verified,True,H&E,4.297221025763029,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946803,,,val,sda-all,samples/GSE249403/GSM7946803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7946804,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2558,55357,counts,um,1.0,verified,True,H&E,4.294126699459048,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946804,,,val,sda-all,samples/GSE249403/GSM7946804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7946803,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2587,55357,counts,um,1.0,verified,True,H&E,4.2972210257630294,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946803,,,val,sda-all,samples/GSE249403/GSM7946803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7946804,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,neonatal or infant,age rule: postnatal day,neonatal or infant,P7,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2558,55357,counts,um,1.0,verified,True,H&E,4.2941266994590475,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946804,,,val,sda-all,samples/GSE249403/GSM7946804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7946805,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,adult,age rule: postnatal day,juvenile,P56,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2958,55357,counts,um,1.0,verified,True,H&E,4.067997459082854,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946805,,,val,sda-all,samples/GSE249403/GSM7946805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7946806,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,adult,age rule: postnatal day,juvenile,P56,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2816,55357,counts,um,1.0,verified,True,H&E,4.068311511074861,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946806,,,val,sda-all,samples/GSE249403/GSM7946806,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM7946807,GSE249403+GSE249405,GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,The mice were labeled with 4-thiouridine (4sU) for 4hr,adult,age rule: postnatal day,juvenile,P56,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2905,55357,counts,um,1.0,verified,True,H&E,4.072800677899719,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42675226,,GSM7946807,,,val,sda-all,samples/GSE249403/GSM7946807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -3213,7 +3213,7 @@ GSM7964514,GSE249803+GSE249804,GSE249803,Spatial transcriptomics reveals spatial GSM7964515,GSE249803+GSE249804,GSE249803,Spatial transcriptomics reveals spatial remodling of hepatic lobule during liver regeneration,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,PHx48h,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3080,54232,counts,pixel,4.509610335715777,platform_constant,True,H&E,4.509610335715777,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41033443,,GSM7964515,,,train,hesrt,samples/GSE249803/GSM7964515,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7964516,GSE249803+GSE249804,GSE249803,Spatial transcriptomics reveals spatial remodling of hepatic lobule during liver regeneration,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,CCl4,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2827,54232,counts,pixel,4.508963290416954,platform_constant,True,H&E,4.508963290416954,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41033443,,GSM7964516,,,train,hesrt,samples/GSE249803/GSM7964516,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7968251,GSE249965,GSE249965,Spatial transcriptomics of primary human hepatoblastomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Hepatoblastoma,tumour tissue,MONDO:0018666,hepatoblastoma,disease,luna,hepatoblastoma,,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3212,17943,counts,pixel,4.370865117913649,platform_constant,True,H&E,4.370865117913649,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567523,,GSM7968251,,,train,hesrt,samples/GSE249965/GSM7968251,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7968252,GSE249965,GSE249965,Spatial transcriptomics of primary human hepatoblastomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Hepatoblastoma,tumour tissue,MONDO:0018666,hepatoblastoma,disease,luna,hepatoblastoma,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1350,17943,counts,pixel,4.809401924433399,platform_constant,True,H&E,4.809401924433399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567523,,GSM7968252,,,train,hesrt,samples/GSE249965/GSM7968252,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7968252,GSE249965,GSE249965,Spatial transcriptomics of primary human hepatoblastomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Hepatoblastoma,tumour tissue,MONDO:0018666,hepatoblastoma,disease,luna,hepatoblastoma,,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1350,17943,counts,pixel,4.8094019244333985,platform_constant,True,H&E,4.8094019244333985,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567523,,GSM7968252,,,train,hesrt,samples/GSE249965/GSM7968252,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7968253,GSE249965,GSE249965,Spatial transcriptomics of primary human hepatoblastomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Normal liver,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1729,17943,counts,pixel,4.807111908562388,platform_constant,True,H&E,4.807111908562388,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39567523,,GSM7968253,,,train,hesrt,samples/GSE249965/GSM7968253,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.28, ""uberon"": 0.7000000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM7974475,GSE250138,GSE250138,Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0002462,glomerulonephritis,disease,luna,ANCA-associated glomerulonephritis,ANCA-GN,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,883,17943,counts,pixel,4.2799998866656095,platform_constant,True,H&E,4.2799998866656095,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39300109;40393992,10.1038/s41467-024-52525-w,GSM7974475,,,train,hesrt,samples/GSE250138/GSM7974475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7974476,GSE250138,GSE250138,Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0002462,glomerulonephritis,disease,luna,ANCA-associated glomerulonephritis,ANCA-GN,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,724,17943,counts,pixel,4.277142870017056,platform_constant,True,H&E,4.277142870017056,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39300109;40393992,10.1038/s41467-024-52525-w,GSM7974476,,,train,hesrt,samples/GSE250138/GSM7974476,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3246,7 +3246,7 @@ GSM7974888,GSE250163,GSE250163,Role of copper in progression of clear cell renal GSM7990532,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,53,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,73785,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999885247406591,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990532,,,train,sda-all,samples/GSE250346/GSM7990532,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990533,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,48,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,34998,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999742692466035,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990533,,,train,sda-all,samples/GSE250346/GSM7990533,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990534,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,54,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,52165,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948524365133,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990534,,,train,sda-all,samples/GSE250346/GSM7990534,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7990535,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,54,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,40810,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999720226175049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990535,,,train,sda-all,samples/GSE250346/GSM7990535,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7990535,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,54,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,40810,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997202261750495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990535,,,train,sda-all,samples/GSE250346/GSM7990535,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990536,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771;MONDO:0800504,pulmonary fibrosis;idiopathic pulmonary fibrosis,disease,luna,,,aged,age rule: bare number read as years,aged,65,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,38293,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948524365133,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990536,,,train,sda-all,samples/GSE250346/GSM7990536,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990537,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,31,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,23758,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999671214861088,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990537,,,train,sda-all,samples/GSE250346/GSM7990537,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM7990538,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,64,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,12578,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499993830207305,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990538,,,train,sda-all,samples/GSE250346/GSM7990538,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3261,12 +3261,12 @@ GSM7990546,GSE250346,GSE250346,Image-based spatial transcriptomics identifies mo GSM7990547,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771;MONDO:0800504,pulmonary fibrosis;idiopathic pulmonary fibrosis,disease,luna,,,aged,age rule: bare number read as years,aged,66,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,22585,518,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990547,,,train,sda-all,samples/GSE250346/GSM7990547,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.58}",life_stage,low_confidence_annotation GSM7990548,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771;MONDO:0800504,pulmonary fibrosis;idiopathic pulmonary fibrosis,disease,luna,,,aged,age rule: bare number read as years,aged,66,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,140997,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000144675925925,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990548,,,train,sda-all,samples/GSE250346/GSM7990548,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.64}",, GSM7990549,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771;MONDO:0800504,pulmonary fibrosis;idiopathic pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,63,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,72153,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999734857412208,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990549,,,train,sda-all,samples/GSE250346/GSM7990549,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7990550,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,62,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,133369,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499997932688332,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990550,,,train,sda-all,samples/GSE250346/GSM7990550,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7990550,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,62,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,133369,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999793268833204,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990550,,,train,sda-all,samples/GSE250346/GSM7990550,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990551,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,60,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,108131,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000091827364554,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990551,,,train,sda-all,samples/GSE250346/GSM7990551,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990552,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,52,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,32868,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999862693944803,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990552,,,train,sda-all,samples/GSE250346/GSM7990552,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990553,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,52,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,22983,521,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990553,,,train,sda-all,samples/GSE250346/GSM7990553,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990554,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,47,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,45690,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000154469312097,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990554,,,train,sda-all,samples/GSE250346/GSM7990554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7990555,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,47,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,35179,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896901142924,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990555,,,train,sda-all,samples/GSE250346/GSM7990555,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7990555,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,,adult,age rule: bare number read as years,adult,47,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,35179,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998969011429245,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990555,,,train,sda-all,samples/GSE250346/GSM7990555,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990556,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771;MONDO:0800504,pulmonary fibrosis;idiopathic pulmonary fibrosis,disease,luna,,,aged,age rule: bare number read as years,aged,65,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,26396,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000343218012081,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990556,,,train,sda-all,samples/GSE250346/GSM7990556,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990557,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771;MONDO:0800504,pulmonary fibrosis;idiopathic pulmonary fibrosis,disease,luna,,,aged,age rule: bare number read as years,aged,65,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,16431,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041118421052,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990557,,,train,sda-all,samples/GSE250346/GSM7990557,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM7990558,GSE250346,GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019338;MONDO:0015925,sarcoidosis;interstitial lung disease,disease,luna,,,adult,age rule: bare number read as years,adult,61,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hLung_97g,xenium-1.1.0.2,cell,59609,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999823217442545,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,38168317;39901013;41390915,,GSM7990558,,,train,sda-all,samples/GSE250346/GSM7990558,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3297,19 +3297,19 @@ GSM7978622,GSE250398,GSE250398,Histological Signatures Reveal Anti-Fibrotic Fact GSM7978623,GSE250398,GSE250398,Histological Signatures Reveal Anti-Fibrotic Factors in Mouse and Human Lungs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0000170,pair of lungs,lungs,primary tissue,,,disease,luna,,"bleomycin, post-injury day 14",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3464,32285,counts,pixel,0.7633365385053724,platform_constant,True,H&E,0.7633365385053724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40108456,,GSM7978623,,,train,hesrt,samples/GSE250398/GSM7978623,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.49, ""life_stage"": 0.9400000000000001}",uberon,low_confidence_annotation GSM7978624,GSE250398,GSE250398,Histological Signatures Reveal Anti-Fibrotic Factors in Mouse and Human Lungs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0000170,pair of lungs,lungs,primary tissue,,,normal,luna,,"control, post-injury day 0",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2848,32285,counts,pixel,0.7633365385053724,platform_constant,True,H&E,0.7633365385053724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40108456,,GSM7978624,,,train,hesrt,samples/GSE250398/GSM7978624,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.59, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM7980860,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3401,36601,counts,pixel,3.898750084115541,platform_constant,True,H&E,3.898750084115541,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980860,,,train,hesrt,samples/GSE250521/GSM7980860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980861,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3839,36601,counts,pixel,3.950000030612524,platform_constant,True,H&E,3.950000030612524,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980861,,,train,hesrt,samples/GSE250521/GSM7980861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980861,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3839,36601,counts,pixel,3.9500000306125242,platform_constant,True,H&E,3.9500000306125242,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980861,,,train,hesrt,samples/GSE250521/GSM7980861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7980862,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4547,36601,counts,pixel,3.9346733920160775,platform_constant,True,H&E,3.9346733920160775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980862,,,train,hesrt,samples/GSE250521/GSM7980862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980863,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3030,36601,counts,pixel,3.920100311603696,platform_constant,True,H&E,3.920100311603696,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980863,,,train,hesrt,samples/GSE250521/GSM7980863,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980864,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2270,36601,counts,pixel,3.886749751384055,platform_constant,True,H&E,3.886749751384055,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980864,,,train,hesrt,samples/GSE250521/GSM7980864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980863,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,primary tissue,,,normal,luna,,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3030,36601,counts,pixel,3.9201003116036954,platform_constant,True,H&E,3.9201003116036954,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980863,,,train,hesrt,samples/GSE250521/GSM7980863,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980864,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2270,36601,counts,pixel,3.8867497513840545,platform_constant,True,H&E,3.8867497513840545,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980864,,,train,hesrt,samples/GSE250521/GSM7980864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7980865,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4952,36601,counts,pixel,4.036180775881461,platform_constant,True,H&E,4.036180775881461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980865,,,train,hesrt,samples/GSE250521/GSM7980865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980866,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4524,36601,counts,pixel,3.833117498348983,platform_constant,True,H&E,3.833117498348983,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980866,,,train,hesrt,samples/GSE250521/GSM7980866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980867,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4748,36601,counts,pixel,3.905224170833269,platform_constant,True,H&E,3.905224170833269,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980867,,,train,hesrt,samples/GSE250521/GSM7980867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980868,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Locally advanced papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1520,36601,counts,pixel,3.9102503694209063,platform_constant,True,H&E,3.9102503694209063,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980868,,,train,hesrt,samples/GSE250521/GSM7980868,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980866,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4524,36601,counts,pixel,3.8331174983489826,platform_constant,True,H&E,3.8331174983489826,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980866,,,train,hesrt,samples/GSE250521/GSM7980866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980867,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4748,36601,counts,pixel,3.9052241708332693,platform_constant,True,H&E,3.9052241708332693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980867,,,train,hesrt,samples/GSE250521/GSM7980867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980868,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Locally advanced papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1520,36601,counts,pixel,3.9102503694209068,platform_constant,True,H&E,3.9102503694209068,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980868,,,train,hesrt,samples/GSE250521/GSM7980868,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7980869,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Locally advanced papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4174,36601,counts,pixel,4.177959255555863,platform_constant,True,H&E,4.177959255555863,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980869,,,train,hesrt,samples/GSE250521/GSM7980869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980870,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Locally advanced papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4633,36601,counts,pixel,4.09431802009262,platform_constant,True,H&E,4.09431802009262,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980870,,,train,hesrt,samples/GSE250521/GSM7980870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7980870,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Locally advanced papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4633,36601,counts,pixel,4.0943180200926195,platform_constant,True,H&E,4.0943180200926195,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980870,,,train,hesrt,samples/GSE250521/GSM7980870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7980871,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0005075,thyroid gland papillary carcinoma,disease,luna,Locally advanced papillary thyroid carcinoma,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4737,36601,counts,pixel,4.317873153697997,platform_constant,True,H&E,4.317873153697997,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980871,,,train,hesrt,samples/GSE250521/GSM7980871,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7980872,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0006468,thyroid gland undifferentiated (anaplastic) carcinoma,disease,luna,Anaplastic thyroid cancer,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4722,36601,counts,pixel,3.874578937848402,platform_constant,True,H&E,3.874578937848402,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980872,,,train,hesrt,samples/GSE250521/GSM7980872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7980873,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0006468,thyroid gland undifferentiated (anaplastic) carcinoma,disease,luna,Anaplastic thyroid cancer,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2684,36601,counts,pixel,3.9460731879207303,platform_constant,True,H&E,3.9460731879207303,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980873,,,train,hesrt,samples/GSE250521/GSM7980873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM7980873,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0006468,thyroid gland undifferentiated (anaplastic) carcinoma,disease,luna,Anaplastic thyroid cancer,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2684,36601,counts,pixel,3.9460731879207307,platform_constant,True,H&E,3.9460731879207307,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980873,,,train,hesrt,samples/GSE250521/GSM7980873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7980874,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0006468,thyroid gland undifferentiated (anaplastic) carcinoma,disease,luna,Anaplastic thyroid cancer,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1622,36601,counts,pixel,4.046413066516737,platform_constant,True,H&E,4.046413066516737,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980874,,,train,hesrt,samples/GSE250521/GSM7980874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7980875,GSE250521,GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,thyroid,luna,UBERON:0002046,thyroid gland,Thyroid,tumour tissue,MONDO:0006468,thyroid gland undifferentiated (anaplastic) carcinoma,disease,luna,Anaplastic thyroid cancer,none,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2594,36601,counts,pixel,3.9914143782646585,platform_constant,True,H&E,3.9914143782646585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7980875,,,train,hesrt,samples/GSE250521/GSM7980875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7983358,GSE250636,GSE250636,Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002240,spinal cord,Melanoma leptomeningeal metastasis (LMM),metastasis,MONDO:0700219;MONDO:0005105,neoplastic meningitis;melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE250636:B,B,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,520,36601,counts,pixel,4.04038458778878,platform_constant,True,H&E,4.04038458778878,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38866016;39005315;39636739,,GSM7983358,,,train,hesrt,samples/GSE250636/GSM7983358,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -3346,43 +3346,43 @@ GSM7990295,GSE251938,GSE251938,Single-cell and In Situ Spatial Transcriptomics o GSM7990473,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3834,36601,counts,pixel,4.210239215857161,platform_constant,True,H&E,4.210239215857161,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990473,,,train,hesrt,samples/GSE251950/GSM7990473,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7990474,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4274,36601,counts,pixel,4.028525425404048,platform_constant,True,H&E,4.028525425404048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990474,,,train,hesrt,samples/GSE251950/GSM7990474,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM7990475,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3043,36601,counts,pixel,3.99166183320689,platform_constant,True,H&E,3.99166183320689,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990475,,,train,hesrt,samples/GSE251950/GSM7990475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7990476,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4244,36601,counts,pixel,3.900848516482609,platform_constant,True,H&E,3.900848516482609,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990476,,,train,hesrt,samples/GSE251950/GSM7990476,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7990476,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4244,36601,counts,pixel,3.9008485164826086,platform_constant,True,H&E,3.9008485164826086,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990476,,,train,hesrt,samples/GSE251950/GSM7990476,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990477,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3577,36601,counts,pixel,4.039648976193794,platform_constant,True,H&E,4.039648976193794,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990477,,,train,hesrt,samples/GSE251950/GSM7990477,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM7990478,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2426,36601,counts,pixel,3.920107830988812,platform_constant,True,H&E,3.920107830988812,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990478,,,train,hesrt,samples/GSE251950/GSM7990478,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990479,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Gastric Cancer Metastasis,metastasis,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer Metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2483,36601,counts,pixel,4.049560191014317,platform_constant,True,H&E,4.049560191014317,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990479,,,train,hesrt,samples/GSE251950/GSM7990479,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM7990480,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1882,36601,counts,pixel,3.892464486712124,platform_constant,True,H&E,3.892464486712124,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990480,,,train,hesrt,samples/GSE251950/GSM7990480,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7990480,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1882,36601,counts,pixel,3.8924644867121243,platform_constant,True,H&E,3.8924644867121243,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990480,,,train,hesrt,samples/GSE251950/GSM7990480,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990481,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3037,36601,counts,pixel,4.008508606517139,platform_constant,True,H&E,4.008508606517139,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990481,,,train,hesrt,samples/GSE251950/GSM7990481,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7990482,GSE251950,GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric Cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Gastric Cancer,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3491,36601,counts,pixel,3.9707450390309296,platform_constant,True,H&E,3.9707450390309296,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39580151,,GSM7990482,,,train,hesrt,samples/GSE251950/GSM7990482,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM7993541,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,22156,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993541,,,val,sda-all,samples/GSE252090/GSM7993541,sda-tissue-disease-2.3,"{""organ"": 0.74, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993542,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,9948,98,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993542,,,val,sda-all,samples/GSE252090/GSM7993542,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993543,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,40985,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993543,,,val,sda-all,samples/GSE252090/GSM7993543,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993544,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,32878,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993544,,,val,sda-all,samples/GSE252090/GSM7993544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM7993545,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,10485,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993545,,,val,sda-all,samples/GSE252090/GSM7993545,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993546,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,10656,98,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993546,,,val,sda-all,samples/GSE252090/GSM7993546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993547,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,14283,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993547,,,val,sda-all,samples/GSE252090/GSM7993547,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993548,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,10210,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993548,,,val,sda-all,samples/GSE252090/GSM7993548,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993549,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,1914,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993549,,,val,sda-all,samples/GSE252090/GSM7993549,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993550,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,15120,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993550,,,val,sda-all,samples/GSE252090/GSM7993550,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993551,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,4519,97,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993551,,,val,sda-all,samples/GSE252090/GSM7993551,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993552,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,13591,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993552,,,val,sda-all,samples/GSE252090/GSM7993552,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993553,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,7084,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993553,,,val,sda-all,samples/GSE252090/GSM7993553,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993554,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,9052,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993554,,,val,sda-all,samples/GSE252090/GSM7993554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993555,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,5743,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993555,,,val,sda-all,samples/GSE252090/GSM7993555,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993556,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,13004,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993556,,,val,sda-all,samples/GSE252090/GSM7993556,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993557,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,6206,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993557,,,val,sda-all,samples/GSE252090/GSM7993557,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993558,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,17905,119,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993558,,,val,sda-all,samples/GSE252090/GSM7993558,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993559,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,8547,115,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993559,,,val,sda-all,samples/GSE252090/GSM7993559,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993560,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,18026,120,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993560,,,val,sda-all,samples/GSE252090/GSM7993560,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993561,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,4972,114,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993561,,,val,sda-all,samples/GSE252090/GSM7993561,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993562,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,9726,119,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993562,,,val,sda-all,samples/GSE252090/GSM7993562,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993563,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Resolve Molecular Cartography,imaging-based,other,,,cell,28106,119,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993563,,,val,sda-all,samples/GSE252090/GSM7993563,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM7993541,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,22156,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993541,,,val,sda-all,samples/GSE252090/GSM7993541,sda-tissue-disease-2.3,"{""organ"": 0.74, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993542,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,9948,98,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993542,,,val,sda-all,samples/GSE252090/GSM7993542,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993543,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,40985,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993543,,,val,sda-all,samples/GSE252090/GSM7993543,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993544,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,32878,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993544,,,val,sda-all,samples/GSE252090/GSM7993544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM7993545,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,10485,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993545,,,val,sda-all,samples/GSE252090/GSM7993545,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993546,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,10656,98,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993546,,,val,sda-all,samples/GSE252090/GSM7993546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993547,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,14283,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993547,,,val,sda-all,samples/GSE252090/GSM7993547,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993548,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,10210,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993548,,,val,sda-all,samples/GSE252090/GSM7993548,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993549,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,1914,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993549,,,val,sda-all,samples/GSE252090/GSM7993549,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993550,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,15120,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993550,,,val,sda-all,samples/GSE252090/GSM7993550,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993551,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,4519,97,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993551,,,val,sda-all,samples/GSE252090/GSM7993551,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993552,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,13591,100,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993552,,,val,sda-all,samples/GSE252090/GSM7993552,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993553,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,7084,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993553,,,val,sda-all,samples/GSE252090/GSM7993553,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993554,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,9052,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993554,,,val,sda-all,samples/GSE252090/GSM7993554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993555,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,5743,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993555,,,val,sda-all,samples/GSE252090/GSM7993555,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993556,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,13004,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993556,,,val,sda-all,samples/GSE252090/GSM7993556,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993557,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,6206,99,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993557,,,val,sda-all,samples/GSE252090/GSM7993557,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993558,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,17905,119,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993558,,,val,sda-all,samples/GSE252090/GSM7993558,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993559,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,8547,115,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993559,,,val,sda-all,samples/GSE252090/GSM7993559,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993560,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,18026,120,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993560,,,val,sda-all,samples/GSE252090/GSM7993560,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993561,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,4972,114,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993561,,,val,sda-all,samples/GSE252090/GSM7993561,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993562,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,9726,119,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993562,,,val,sda-all,samples/GSE252090/GSM7993562,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993563,GSE252090,GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Tumor,tumour tissue,MONDO:0007959,medulloblastoma,disease,luna,Medulloblastoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Molecular Cartography,GEO series text (assay_final.csv),Molecular Cartography,imaging-based,other,,,cell,28106,119,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,40335697,,GSM7993563,,,val,sda-all,samples/GSE252090/GSM7993563,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM7993714,GSE252108+GSE252113,GSE252108,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses [I],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,ACC,tumour tissue,MONDO:0006639,adrenal cortex carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1113,36601,counts,um,1.0,verified,False,,,VERIFIED,ABSENT,ABSENT,image_review_fail,,VERIFIED,FAIL,,,,,GSM7993714,,,train,sda-all,samples/GSE252108/GSM7993714,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.81, ""life_stage"": 1.0}",, GSM7993715,GSE252108+GSE252113,GSE252108,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses [I],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,ACC,tumour tissue,MONDO:0006639,adrenal cortex carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1165,36601,counts,um,1.0,verified,False,,,VERIFIED,ABSENT,ABSENT,image_review_fail,,VERIFIED,FAIL,,,,,GSM7993715,,,train,sda-all,samples/GSE252108/GSM7993715,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM7993713,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,ACC,tumour tissue,MONDO:0006639,adrenal cortex carcinoma,disease,luna,adrenocortical carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1418,36601,counts,pixel,0.2538038367105339,platform_constant,True,H&E,0.4999911874291707,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993713,,,train,hesrt,samples/GSE252113/GSM7993713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.79, ""life_stage"": 0.99}",, GSM7993716,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,ACC,tumour tissue,MONDO:0006639,adrenal cortex carcinoma,disease,luna,adrenocortical carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1734,36601,counts,pixel,0.2538038367105339,platform_constant,True,H&E,0.5000084879572054,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993716,,,train,hesrt,samples/GSE252113/GSM7993716,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": 0.8, ""life_stage"": 1.0}",, GSM7993717,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Normal Adrenal gland,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1734,36601,counts,pixel,0.2732199644969258,platform_constant,True,H&E,0.4999956798644899,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993717,,,train,hesrt,samples/GSE252113/GSM7993717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM7993718,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Normal Adrenal gland,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1939,36601,counts,pixel,0.2732199644969258,platform_constant,True,H&E,0.4999891171350188,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993718,,,train,hesrt,samples/GSE252113/GSM7993718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM7993719,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Normal Adrenal gland,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1400,36601,counts,pixel,0.2732199644969258,platform_constant,True,H&E,0.4999891171350188,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993719,,,train,hesrt,samples/GSE252113/GSM7993719,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM7993718,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Normal Adrenal gland,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1939,36601,counts,pixel,0.2732199644969258,platform_constant,True,H&E,0.49998911713501887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993718,,,train,hesrt,samples/GSE252113/GSM7993718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM7993719,GSE252113,GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Normal Adrenal gland,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1400,36601,counts,pixel,0.2732199644969258,platform_constant,True,H&E,0.49998911713501887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM7993719,,,train,hesrt,samples/GSE252113/GSM7993719,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7996201,GSE252176,GSE252176,Multi-Omics molecular subtyping based on commensal microbiome predicts molecular characteristics and therapeutic response in Triple-Negative Breast Cancer [Spatial Transcriptome seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3207,58825,counts,pixel,4.178250168884879,platform_constant,True,H&E,4.178250168884879,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38730464,,GSM7996201,,,val,hesrt,samples/GSE252176/GSM7996201,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7996202,GSE252176,GSE252176,Multi-Omics molecular subtyping based on commensal microbiome predicts molecular characteristics and therapeutic response in Triple-Negative Breast Cancer [Spatial Transcriptome seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3023,58825,counts,pixel,4.132750048012227,platform_constant,True,H&E,4.132750048012227,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38730464,,GSM7996202,,,val,hesrt,samples/GSE252176/GSM7996202,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM7996203,GSE252176,GSE252176,Multi-Omics molecular subtyping based on commensal microbiome predicts molecular characteristics and therapeutic response in Triple-Negative Breast Cancer [Spatial Transcriptome seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast tissue,tumour tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,triple negative breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3906,58825,counts,pixel,4.150249869113583,platform_constant,True,H&E,4.150249869113583,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38730464,,GSM7996203,,,val,hesrt,samples/GSE252176/GSM7996203,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3392,9 +3392,9 @@ GSM8013396,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Arc GSM8013397,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2449,33538,counts,pixel,3.98780835266996,platform_constant,True,H&E,3.98780835266996,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013397,,,test,hesrt,samples/GSE253080/GSM8013397,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8013398,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2360,33538,counts,pixel,4.050000133629758,platform_constant,True,H&E,4.050000133629758,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013398,,,test,hesrt,samples/GSE253080/GSM8013398,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8013399,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1428,33538,counts,pixel,4.03278673683935,platform_constant,True,H&E,4.03278673683935,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013399,,,test,hesrt,samples/GSE253080/GSM8013399,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8013400,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2708,33538,counts,pixel,3.978731786006117,platform_constant,True,H&E,3.978731786006117,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013400,,,test,hesrt,samples/GSE253080/GSM8013400,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8013400,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2708,33538,counts,pixel,3.9787317860061173,platform_constant,True,H&E,3.9787317860061173,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013400,,,test,hesrt,samples/GSE253080/GSM8013400,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8013401,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2293,33538,counts,pixel,4.039401916199206,platform_constant,True,H&E,4.039401916199206,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013401,,,test,hesrt,samples/GSE253080/GSM8013401,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8013402,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3417,33538,counts,pixel,4.090285042704672,platform_constant,True,H&E,4.090285042704672,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013402,,,test,hesrt,samples/GSE253080/GSM8013402,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8013402,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient1,Patient1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3417,33538,counts,pixel,4.0902850427046715,platform_constant,True,H&E,4.0902850427046715,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013402,,,test,hesrt,samples/GSE253080/GSM8013402,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8013403,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient2,Patient2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4181,33538,counts,pixel,4.16419195602892,platform_constant,True,H&E,4.16419195602892,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013403,,,test,hesrt,samples/GSE253080/GSM8013403,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8013404,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient2,Patient2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2953,33538,counts,pixel,4.043032364287294,platform_constant,True,H&E,4.043032364287294,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013404,,,test,hesrt,samples/GSE253080/GSM8013404,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8013405,GSE253080,GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,WHO Grade IV GBM,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,GSE253080:Patient2,Patient2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3394,33538,counts,pixel,4.043032364287294,platform_constant,True,H&E,4.043032364287294,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38947514;40867324,,GSM8013405,,,test,hesrt,samples/GSE253080/GSM8013405,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -3420,7 +3420,7 @@ GSM8019442,GSE253378,GSE253378,A spatial transcriptomics based Label-free Method GSM8019443,GSE253378,GSE253378,A spatial transcriptomics based Label-free Method for Assessment of Human Stem Cell Distribution and Effects in a Mouse Model of Lung Fibrosis,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,Homo sapiens; Mus musculus,,lung,luna,UBERON:0002048,lung,Lung Fibrosis Treated with hMSCs,primary tissue,,,disease,luna,lung fibrosis,"Therapy with Normal bone marrow derived hMSC, prepared from Lonza™",not stated,luna,not stated,9 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2916,68886,counts,pixel,0.7246376811594203,platform_constant,True,H&E,0.7246376811594203,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1002/adtp.202300283,GSM8019443,,,train,hesrt,samples/GSE253378/GSM8019443,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8019444,GSE253378,GSE253378,A spatial transcriptomics based Label-free Method for Assessment of Human Stem Cell Distribution and Effects in a Mouse Model of Lung Fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung Fibrosis,primary tissue,,,disease,luna,lung fibrosis,,adult,age rule: age with unit,not stated,9 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3739,68886,counts,pixel,0.5076142131979695,platform_constant,True,H&E,0.5076142131979695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1002/adtp.202300283,GSM8019444,,,train,hesrt,samples/GSE253378/GSM8019444,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8019445,GSE253378,GSE253378,A spatial transcriptomics based Label-free Method for Assessment of Human Stem Cell Distribution and Effects in a Mouse Model of Lung Fibrosis,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,Homo sapiens; Mus musculus,,lung,luna,UBERON:0002048,lung,Lung Fibrosis Treated with hMSCs,primary tissue,,,disease,luna,lung fibrosis,"Therapy with Normal bone marrow derived hMSC, prepared from Lonza™",not stated,luna,not stated,9 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3208,68886,counts,pixel,0.5076142131979695,platform_constant,True,H&E,0.5076142131979695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1002/adtp.202300283,GSM8019445,,,train,hesrt,samples/GSE253378/GSM8019445,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM8020616,GSE253428,GSE253428,Spatial transcriptomic sequencing of day 7 tumors in G422TN-GBM model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain-G422TN-GBM,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2807,31432,counts,um,1.0,verified,True,H&E-like (heuristic),3.360657041023408,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42474078,,GSM8020616,,,train,sda-all,samples/GSE253428/GSM8020616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.55, ""disease_status"": 0.8300000000000001, ""uberon"": 0.92, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM8020616,GSE253428,GSE253428,Spatial transcriptomic sequencing of day 7 tumors in G422TN-GBM model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain-G422TN-GBM,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2807,31432,counts,um,1.0,verified,True,H&E-like (heuristic),3.3606570410234076,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42474078,,GSM8020616,,,train,sda-all,samples/GSE253428/GSM8020616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.55, ""disease_status"": 0.8300000000000001, ""uberon"": 0.92, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8020736,GSE253439,GSE253439,Nanostring CosMx 980-plex RNA profiling of human kidney biopsy and nephrectomy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Three biopsies with minimal change disease,primary tissue,MONDO:0006835,minimal change disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,55061,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,40399382,,GSM8020736,,,train,sda-all,samples/GSE253439/GSM8020736,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8020737,GSE253439,GSE253439,Nanostring CosMx 980-plex RNA profiling of human kidney biopsy and nephrectomy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Three biopsies with IgA nephropathy,primary tissue,MONDO:0005342,IgA glomerulonephritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,68118,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,40399382,,GSM8020737,,,train,sda-all,samples/GSE253439/GSM8020737,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8020738,GSE253439,GSE253439,Nanostring CosMx 980-plex RNA profiling of human kidney biopsy and nephrectomy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Three biopsies with IgA nephropathy,primary tissue,MONDO:0005342,IgA glomerulonephritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,60170,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,40399382,,GSM8020738,,,train,sda-all,samples/GSE253439/GSM8020738,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3578,10 +3578,10 @@ GSM8026854,GSE253710,GSE253710,Respiratory infection with influenza A virus dela GSM8026855,GSE253710,GSE253710,Respiratory infection with influenza A virus delays remyelination and alters oligodendrocyte metabolism.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005812,influenza,disease,luna,,Influenza virus inoculated,adult,age rule: age with unit,adult,13.5 weeks,male,M,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1948,36178,counts,um,1.0,verified,True,H&E-like (heuristic),4.143473316311079,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39104416,,GSM8026855,,,train,sda-all,samples/GSE253710/GSM8026855,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8028753,GSE253850+GSE253852,GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,52 years,male,Male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1216,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.551885118633454,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8028753,,,train,sda-all,samples/GSE253850/GSM8028753,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8028754,GSE253850+GSE253852,GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,61 years,female,Female,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2609,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.550215855995936,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8028754,,,train,sda-all,samples/GSE253850/GSM8028754,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8028755,GSE253850+GSE253852,GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,21 years,male,Male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1361,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.554217860512392,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8028755,,,train,sda-all,samples/GSE253850/GSM8028755,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8028755,GSE253850+GSE253852,GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,21 years,male,Male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1361,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.5542178605123915,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8028755,,,train,sda-all,samples/GSE253850/GSM8028755,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8028756,GSE253850+GSE253852,GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,19 years,female,Female,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1798,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.553005110575694,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8028756,,,train,sda-all,samples/GSE253850/GSM8028756,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8874474,GSE253852,GSE253852,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,8 weeks,male,Male,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,276508,32285,counts,um,1.0,verified,True,H&E-like (heuristic),1.2008360163485663,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8874474,,,train,sda-all,samples/GSE253852/GSM8874474,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM8874475,GSE253852,GSE253852,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,8 weeks,female,Female,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,254720,32285,counts,um,1.0,verified,True,H&E-like (heuristic),0.9325438014927192,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8874475,,,train,sda-all,samples/GSE253852/GSM8874475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8874475,GSE253852,GSE253852,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,adrenal gland,luna,UBERON:0002369,adrenal gland,adult adrenal gland,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,8 weeks,female,Female,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,254720,32285,counts,um,1.0,verified,True,H&E-like (heuristic),0.9325438014927191,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8874475,,,train,sda-all,samples/GSE253852/GSM8874475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8030977,GSE253951,GSE253951,Conserved dorsal horn neuron subtype-specific enhancers are implicated in the genetic risk of chronic pain [Mouse Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,,,normal,luna,,,adult,luna,adult,0.19,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Brain Gene Expression,xenium-1.6.0.8,cell,49625,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39453813,,GSM8030977,,,train,sda-all,samples/GSE253951/GSM8030977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.76}",, GSM8030978,GSE253951,GSE253951,Conserved dorsal horn neuron subtype-specific enhancers are implicated in the genetic risk of chronic pain [Mouse Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,,,normal,luna,,,adult,luna,adult,0.19,female,female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Brain Gene Expression,xenium-1.6.0.8,cell,32448,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000160462130937,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39453813,,GSM8030978,,,train,sda-all,samples/GSE253951/GSM8030978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.74}",, GSM8032725,GSE254056,GSE254056,Injury-Induced CLU-Positive Cardiomyocytes Drive Metabolic Reprogramming of Macrophage Function in Heart Regeneration [stero-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,GFP overexpressed,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,stero-seq,,,bin,38298,26463,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41205597,,GSM8032725,,,val,sda-all,samples/GSE254056/GSM8032725,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3593,7 +3593,7 @@ GSM8035259,GSE254164,GSE254164,Dynamic fibroblast-immune interactions shape reco GSM8035260,GSE254164,GSE254164,Dynamic fibroblast-immune interactions shape recovery after brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000956,cerebral cortex,Brain,primary tissue,MONDO:0043510,brain injury,disease,mondo_predicate (Luna: perturbation),,PT injury,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2170,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.338095616480534,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40903576,,GSM8035260,,,train,sda-all,samples/GSE254164/GSM8035260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.46, ""life_stage"": 0.9500000000000001}",uberon,low_confidence_annotation GSM8035261,GSE254164,GSE254164,Dynamic fibroblast-immune interactions shape recovery after brain injury,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000956,cerebral cortex,Brain,primary tissue,MONDO:0043510,brain injury,disease,mondo_predicate (Luna: perturbation),,PT injury,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2502,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),5.479491704876656,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40903576,,GSM8035261,,,train,sda-all,samples/GSE254164/GSM8035261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.51, ""life_stage"": 0.93}",disease_status;uberon,low_confidence_annotation GSM8041061,GSE254364,GSE254364,High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colo-rectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4160,17943,counts,pixel,4.032308285759785,platform_constant,True,H&E,4.032308285759785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36652202,,GSM8041061,,,test,hesrt,samples/GSE254364/GSM8041061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8041062,GSE254364,GSE254364,High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colo-rectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3070,17943,counts,pixel,3.997644470316336,platform_constant,True,H&E,3.997644470316336,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36652202,,GSM8041062,,,test,hesrt,samples/GSE254364/GSM8041062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8041062,GSE254364,GSE254364,High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,CLM,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,colo-rectal liver metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3070,17943,counts,pixel,3.9976444703163354,platform_constant,True,H&E,3.9976444703163354,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,36652202,,GSM8041062,,,test,hesrt,samples/GSE254364/GSM8041062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8047864,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2207,32285,counts,pixel,3.908928593318572,platform_constant,True,H&E,3.908928593318572,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047864,,,train,hesrt,samples/GSE254652/GSM8047864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047865,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,CTRL,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1948,32285,counts,pixel,4.067857261231787,platform_constant,True,H&E,4.067857261231787,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047865,,,train,hesrt,samples/GSE254652/GSM8047865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047866,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1220,32285,counts,pixel,4.028571531702853,platform_constant,True,H&E,4.028571531702853,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047866,,,train,hesrt,samples/GSE254652/GSM8047866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -3605,16 +3605,16 @@ GSM8047871,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic techn GSM8047872,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2048,32285,counts,pixel,4.09821426214956,platform_constant,True,H&E,4.09821426214956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047872,,,train,hesrt,samples/GSE254652/GSM8047872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047873,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1877,32285,counts,pixel,4.012499803588139,platform_constant,True,H&E,4.012499803588139,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047873,,,train,hesrt,samples/GSE254652/GSM8047873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8047874,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2222,32285,counts,pixel,3.9393937818182017,platform_constant,True,H&E,3.9393937818182017,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047874,,,train,hesrt,samples/GSE254652/GSM8047874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8047875,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,CTRL,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2213,32285,counts,pixel,3.969696858545456,platform_constant,True,H&E,3.969696858545456,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047875,,,train,hesrt,samples/GSE254652/GSM8047875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM8047875,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,CTRL,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2213,32285,counts,pixel,3.9696968585454555,platform_constant,True,H&E,3.9696968585454555,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047875,,,train,hesrt,samples/GSE254652/GSM8047875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8047876,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,CTRL,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2708,32285,counts,pixel,4.04107151765685,platform_constant,True,H&E,4.04107151765685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047876,,,train,hesrt,samples/GSE254652/GSM8047876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047877,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,T-bet KO,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2244,32285,counts,pixel,4.073214366363932,platform_constant,True,H&E,4.073214366363932,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047877,,,train,hesrt,samples/GSE254652/GSM8047877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8047878,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,T-bet KO,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2528,32285,counts,pixel,3.969696858545456,platform_constant,True,H&E,3.969696858545456,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047878,,,train,hesrt,samples/GSE254652/GSM8047878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8047878,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,T-bet KO,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2528,32285,counts,pixel,3.9696968585454555,platform_constant,True,H&E,3.9696968585454555,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047878,,,train,hesrt,samples/GSE254652/GSM8047878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047879,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2034,19465,counts,pixel,4.122604529784976,platform_constant,True,H&E,4.122604529784976,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047879,,,train,hesrt,samples/GSE254652/GSM8047879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047880,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1910,19465,counts,pixel,4.006060352076387,platform_constant,True,H&E,4.006060352076387,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047880,,,train,hesrt,samples/GSE254652/GSM8047880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047881,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1922,19465,counts,pixel,4.078350296864351,platform_constant,True,H&E,4.078350296864351,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047881,,,train,hesrt,samples/GSE254652/GSM8047881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047882,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1640,19465,counts,pixel,4.0453611098593205,platform_constant,True,H&E,4.0453611098593205,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047882,,,train,hesrt,samples/GSE254652/GSM8047882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047883,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2553,19465,counts,pixel,3.1422571805497697,platform_constant,True,H&E,3.1422571805497697,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047883,,,train,hesrt,samples/GSE254652/GSM8047883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8047884,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2498,19465,counts,pixel,3.73261611406022,platform_constant,True,H&E,3.73261611406022,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047884,,,train,hesrt,samples/GSE254652/GSM8047884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8047884,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2498,19465,counts,pixel,3.7326161140602196,platform_constant,True,H&E,3.7326161140602196,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047884,,,train,hesrt,samples/GSE254652/GSM8047884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047885,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2002,19465,counts,pixel,4.3574468977511565,platform_constant,True,H&E,4.3574468977511565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047885,,,train,hesrt,samples/GSE254652/GSM8047885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8047886,GSE254652,GSE254652,Comparing 10x Visium spatial transcriptomic technologies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,MONDO:0005136,malaria,disease,luna,malaria infection,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1711,19465,counts,pixel,3.2250969397902605,platform_constant,True,H&E,3.2250969397902605,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40156041;41278534,,GSM8047886,,,train,hesrt,samples/GSE254652/GSM8047886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8058242,GSE254829,GSE254829,PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0002356;MONDO:0024474,pancreas disorder;intraepithelial neoplasia,disease,luna,pancreatic intraepithelial neoplasia,low grade,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2291,17943,counts,pixel,7.045871740007336,platform_constant,True,H&E,7.045871740007336,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40569674,10.1016/j.cels.2024.07.001,GSM8058242,,,train,hesrt,samples/GSE254829/GSM8058242,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.72, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3632,7 +3632,7 @@ GSM8058254,GSE254829,GSE254829,PanIN and CAF Transitions in Pancreatic Carcinoge GSM8058255,GSE254829,GSE254829,PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0002356;MONDO:0024474,pancreas disorder;intraepithelial neoplasia,disease,luna,pancreatic intraepithelial neoplasia,high grade,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2573,17943,counts,pixel,6.757894731435813,platform_constant,True,H&E,6.757894731435813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40569674,10.1016/j.cels.2024.07.001,GSM8058255,,,train,hesrt,samples/GSE254829/GSM8058255,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8059173,GSE254861,GSE254861,Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,PBS and Smarta,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7088,19465,counts,um,1.0,verified,True,H&E-like (heuristic),6.979048860590122,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42313973,,GSM8059173,,,train,sda-all,samples/GSE254861/GSM8059173,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8059174,GSE254861,GSE254861,Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,PBS and Smarta,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3480,19465,counts,um,1.0,verified,True,H&E-like (heuristic),6.480920773871659,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42313973,,GSM8059174,,,train,sda-all,samples/GSE254861/GSM8059174,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.93, ""disease_status"": 0.93, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8066699,GSE255217,GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Trephine BM Biopsy,tumour tissue,MONDO:0018874,acute myeloid leukemia,disease,luna,AML,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,829,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.917616910211249,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38582086,,GSM8066699,,,train,sda-all,samples/GSE255217/GSM8066699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.48, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM8066699,GSE255217,GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Trephine BM Biopsy,tumour tissue,MONDO:0018874,acute myeloid leukemia,disease,luna,AML,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,829,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.9176169102112492,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38582086,,GSM8066699,,,train,sda-all,samples/GSE255217/GSM8066699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.48, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8066700,GSE255217,GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Trephine BM Biopsy,tumour tissue,MONDO:0018874,acute myeloid leukemia,disease,luna,AML,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,646,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.960321809451011,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38582086,,GSM8066700,,,train,sda-all,samples/GSE255217/GSM8066700,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.55, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8066701,GSE255217,GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Trephine BM Biopsy,primary tissue,,,normal,luna,Healthy,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1305,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.975144876190975,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38582086,,GSM8066701,,,train,sda-all,samples/GSE255217/GSM8066701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8066702,GSE255217,GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Trephine BM Biopsy,primary tissue,,,normal,luna,Healthy,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1454,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.977192174125382,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,38582086,,GSM8066702,,,train,sda-all,samples/GSE255217/GSM8066702,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3701,16 +3701,16 @@ GSM8097057,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal GSM8097058,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,,,normal,luna,,"sham, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1440,32285,counts,pixel,3.983608335793203,platform_constant,True,H&E,3.983608335793203,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097058,,,train,hesrt,samples/GSE256397/GSM8097058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8097059,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,"3h post-transection, rostral 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1474,32285,counts,pixel,3.947342988432303,platform_constant,True,H&E,3.947342988432303,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097059,,,train,hesrt,samples/GSE256397/GSM8097059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8097060,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"3h post-transection, rostral 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1691,32285,counts,pixel,3.96666656496135,platform_constant,True,H&E,3.96666656496135,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097060,,,train,hesrt,samples/GSE256397/GSM8097060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8097061,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,"3h post-transection, caudal 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1558,32285,counts,pixel,3.95277788288214,platform_constant,True,H&E,3.95277788288214,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097061,,,train,hesrt,samples/GSE256397/GSM8097061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8097062,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,"3h post-transection, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1488,32285,counts,pixel,3.998951313451277,platform_constant,True,H&E,3.998951313451277,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097062,,,train,hesrt,samples/GSE256397/GSM8097062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8097063,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, rostral 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1433,32285,counts,pixel,3.95292239000056,platform_constant,True,H&E,3.95292239000056,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097063,,,train,hesrt,samples/GSE256397/GSM8097063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8097061,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,"3h post-transection, caudal 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1558,32285,counts,pixel,3.9527778828821396,platform_constant,True,H&E,3.9527778828821396,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097061,,,train,hesrt,samples/GSE256397/GSM8097061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8097062,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,"3h post-transection, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1488,32285,counts,pixel,3.9989513134512764,platform_constant,True,H&E,3.9989513134512764,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097062,,,train,hesrt,samples/GSE256397/GSM8097062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8097063,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, rostral 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1433,32285,counts,pixel,3.9529223900005603,platform_constant,True,H&E,3.9529223900005603,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097063,,,train,hesrt,samples/GSE256397/GSM8097063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8097064,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, rostral 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1401,32285,counts,pixel,3.948611319202931,platform_constant,True,H&E,3.948611319202931,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097064,,,train,hesrt,samples/GSE256397/GSM8097064,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8097065,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, caudal 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1500,32285,counts,pixel,3.962686140024272,platform_constant,True,H&E,3.962686140024272,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097065,,,train,hesrt,samples/GSE256397/GSM8097065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8097066,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1610,32285,counts,pixel,3.95292239000056,platform_constant,True,H&E,3.95292239000056,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097066,,,train,hesrt,samples/GSE256397/GSM8097066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8097065,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, caudal 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1500,32285,counts,pixel,3.9626861400242723,platform_constant,True,H&E,3.9626861400242723,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097065,,,train,hesrt,samples/GSE256397/GSM8097065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8097066,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"24h post-transection, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1610,32285,counts,pixel,3.9529223900005603,platform_constant,True,H&E,3.9529223900005603,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097066,,,train,hesrt,samples/GSE256397/GSM8097066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8097067,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"72h post-transection, rostral 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1264,32285,counts,pixel,3.940369000453341,platform_constant,True,H&E,3.940369000453341,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097067,,,train,hesrt,samples/GSE256397/GSM8097067,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8097068,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,"72h post-transection, rostral 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1080,32285,counts,pixel,3.957106722033494,platform_constant,True,H&E,3.957106722033494,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097068,,,train,hesrt,samples/GSE256397/GSM8097068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8097069,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"72h post-transection, caudal 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1304,32285,counts,pixel,13.194444180555584,platform_constant,True,H&E,13.194444180555584,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097069,,,train,hesrt,samples/GSE256397/GSM8097069,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8097070,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"72h post-transection, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1400,32285,counts,pixel,3.95292239000056,platform_constant,True,H&E,3.95292239000056,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097070,,,train,hesrt,samples/GSE256397/GSM8097070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8097069,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"72h post-transection, caudal 0.5mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1304,32285,counts,pixel,13.194444180555585,platform_constant,True,H&E,13.194444180555585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097069,,,train,hesrt,samples/GSE256397/GSM8097069,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8097070,GSE256397,GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,"72h post-transection, caudal 1mm",adult,age rule: age with unit,not stated,8–9 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1400,32285,counts,pixel,3.9529223900005603,platform_constant,True,H&E,3.9529223900005603,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39029468,10.1016/j.devcel.2024.06.016,GSM8097070,,,train,hesrt,samples/GSE256397/GSM8097070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8115762,GSE256505,GSE256505,Sex differences in Non-Alcoholic Steatohepatitis (NASH) in mice evoked by a fructose-palmitate-cholesterol (FPC)-enriched diet,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007027,metabolic dysfunction-associated steatohepatitis,disease,luna,,NASH,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1290,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,39911943,,GSM8115762,,,train,sda-all,samples/GSE256505/GSM8115762,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8115763,GSE256505,GSE256505,Sex differences in Non-Alcoholic Steatohepatitis (NASH) in mice evoked by a fructose-palmitate-cholesterol (FPC)-enriched diet,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007027,metabolic dysfunction-associated steatohepatitis,disease,luna,,NASH,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1613,32285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,39911943,,GSM8115763,,,train,sda-all,samples/GSE256505/GSM8115763,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8110784,GSE258959,GSE258959,Spatiotemporal Landscape in Kidney of A Mouse Model of Hyperuricemia at Single-Cell Level [spatial transcriptomics data],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,disease,luna,hyperuricemia,Uox_KO,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2650,32285,counts,pixel,5.494422557947547,platform_constant,True,H&E,5.494422557947547,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39817712,,GSM8110784,,,train,hesrt,samples/GSE258959/GSM8110784,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3734,32 +3734,32 @@ GSM8115660,GSE259405,GSE259405,"Repetitive transcranial magnetic stimulation ind GSM8115661,GSE259405,GSE259405,"Repetitive transcranial magnetic stimulation induces cortical layer, brain region, and protocol dependent neural plasticity [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,cTBS,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2648,32285,counts,pixel,4.619081891897559,platform_constant,True,H&E,4.619081891897559,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39772671,,GSM8115661,,,train,hesrt,samples/GSE259405/GSM8115661,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8115662,GSE259405,GSE259405,"Repetitive transcranial magnetic stimulation induces cortical layer, brain region, and protocol dependent neural plasticity [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,cTBS,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2733,32285,counts,pixel,4.618719460521873,platform_constant,True,H&E,4.618719460521873,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39772671,,GSM8115662,,,train,hesrt,samples/GSE259405/GSM8115662,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054415,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,4,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,71227,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999810996563574,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054415,,,val,sda-all,samples/GSE260452/GSM9054415,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM9054416,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,223613,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999839272593681,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054416,,,val,sda-all,samples/GSE260452/GSM9054416,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9054416,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,223613,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998392725936813,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054416,,,val,sda-all,samples/GSE260452/GSM9054416,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054417,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,136005,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000167785234899,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054417,,,val,sda-all,samples/GSE260452/GSM9054417,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9054418,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,150258,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999870947759652,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054418,,,val,sda-all,samples/GSE260452/GSM9054418,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM9054418,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,150258,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998709477596526,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054418,,,val,sda-all,samples/GSE260452/GSM9054418,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054419,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,84565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000245249896736,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054419,,,val,sda-all,samples/GSE260452/GSM9054419,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9054420,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,66638,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999793899422918,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054420,,,val,sda-all,samples/GSE260452/GSM9054420,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.92}",, -GSM9054421,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,105149,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999904415981647,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054421,,,val,sda-all,samples/GSE260452/GSM9054421,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM9054420,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,66638,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997938994229185,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054420,,,val,sda-all,samples/GSE260452/GSM9054420,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.92}",, +GSM9054421,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,105149,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999044159816475,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054421,,,val,sda-all,samples/GSE260452/GSM9054421,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054422,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,122683,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000039826674313,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054422,,,val,sda-all,samples/GSE260452/GSM9054422,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054423,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,144901,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500000739863865,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054423,,,val,sda-all,samples/GSE260452/GSM9054423,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.98}",, GSM9054424,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,13,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,401858,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000058284115636,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054424,,,val,sda-all,samples/GSE260452/GSM9054424,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054425,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,8,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,103335,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103334251861,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054425,,,val,sda-all,samples/GSE260452/GSM9054425,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054426,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,8,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,97780,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000245249896736,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054426,,,val,sda-all,samples/GSE260452/GSM9054426,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9054428,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,180332,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999764150943395,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054428,,,val,sda-all,samples/GSE260452/GSM9054428,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM9054428,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,180332,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997641509433954,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054428,,,val,sda-all,samples/GSE260452/GSM9054428,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9054429,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,160499,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500017686593562,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054429,,,val,sda-all,samples/GSE260452/GSM9054429,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054430,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,160738,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000265330188679,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054430,,,val,sda-all,samples/GSE260452/GSM9054430,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9054431,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,147881,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000029491565412,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054431,,,val,sda-all,samples/GSE260452/GSM9054431,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9054432,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,147265,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991407753643,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054432,,,val,sda-all,samples/GSE260452/GSM9054432,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9054432,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,6,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,147265,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999140775364304,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054432,,,val,sda-all,samples/GSE260452/GSM9054432,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054433,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,93702,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000186196623635,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054433,,,val,sda-all,samples/GSE260452/GSM9054433,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.97}",, GSM9054434,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,<1,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,104023,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999830788899752,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054434,,,val,sda-all,samples/GSE260452/GSM9054434,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054435,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,7,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,132602,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137892995036,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054435,,,val,sda-all,samples/GSE260452/GSM9054435,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054436,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,2,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,61129,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000206213912566,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054436,,,val,sda-all,samples/GSE260452/GSM9054436,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, -GSM9054437,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,2,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,56479,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991407753643,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054437,,,val,sda-all,samples/GSE260452/GSM9054437,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.86}",, -GSM9054438,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,adult,age rule: bare number read as years,adult,19,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,166042,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499997932688332,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054438,,,val,sda-all,samples/GSE260452/GSM9054438,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9054439,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,adult,age rule: bare number read as years,adult,19,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,164677,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999855312112443,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054439,,,val,sda-all,samples/GSE260452/GSM9054439,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9054437,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,2,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,56479,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999140775364304,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054437,,,val,sda-all,samples/GSE260452/GSM9054437,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.86}",, +GSM9054438,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,adult,age rule: bare number read as years,adult,19,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,166042,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999793268833204,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054438,,,val,sda-all,samples/GSE260452/GSM9054438,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9054439,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,adult,age rule: bare number read as years,adult,19,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,164677,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998553121124434,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054439,,,val,sda-all,samples/GSE260452/GSM9054439,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054440,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37655,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000513347022587,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054440,,,val,sda-all,samples/GSE260452/GSM9054440,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.72}",, GSM9054441,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37144,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000082318077049,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054441,,,val,sda-all,samples/GSE260452/GSM9054441,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.74}",, -GSM9054442,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41761,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999923013754875,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054442,,,val,sda-all,samples/GSE260452/GSM9054442,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.6900000000000001}",, +GSM9054442,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,neonatal or infant,luna,neonatal or infant,,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41761,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999230137548756,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054442,,,val,sda-all,samples/GSE260452/GSM9054442,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.6900000000000001}",, GSM9054443,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51207,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999609053497942,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054443,,,val,sda-all,samples/GSE260452/GSM9054443,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054444,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,10,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,105323,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000229610580456,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054444,,,val,sda-all,samples/GSE260452/GSM9054444,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054445,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,8,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57730,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000017186855493,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054445,,,val,sda-all,samples/GSE260452/GSM9054445,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -3770,9 +3770,9 @@ GSM9054449,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling GSM9054450,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,8,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60116,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000309363398872,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,stitching artefacts (expression),41813893,,GSM9054450,,,val,sda-all,samples/GSE260452/GSM9054450,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054451,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54367,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000082318077049,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054451,,,val,sda-all,samples/GSE260452/GSM9054451,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054452,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,17,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67934,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137570504883,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054452,,,val,sda-all,samples/GSE260452/GSM9054452,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM9054453,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54212,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999926305860158,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054453,,,val,sda-all,samples/GSE260452/GSM9054453,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM9054453,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,3,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54212,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999263058601584,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054453,,,val,sda-all,samples/GSE260452/GSM9054453,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054454,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,17,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67897,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000117980179329,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054454,,,val,sda-all,samples/GSE260452/GSM9054454,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM9054455,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,17,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75274,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991407753643,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054455,,,val,sda-all,samples/GSE260452/GSM9054455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM9054455,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,17,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75274,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999140775364304,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054455,,,val,sda-all,samples/GSE260452/GSM9054455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9054456,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,10,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,104122,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054456,,,val,sda-all,samples/GSE260452/GSM9054456,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054457,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,5,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,107594,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000183772856749,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054457,,,val,sda-all,samples/GSE260452/GSM9054457,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054458,GSE260452+GSE300146,GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Ependymoma,tumour tissue,MONDO:0850340;MONDO:0016698,supratentorial ependymoma;ependymoma,disease,luna,,,juvenile,age rule: bare number read as years,juvenile,9,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67027,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214877,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41813893,,GSM9054458,,,val,sda-all,samples/GSE260452/GSM9054458,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -3814,7 +3814,7 @@ GSM8131851,GSE260998,GSE260998,Germinal Center Dark Zone harbors ATR-dependent d GSM8134145,GSE261085,GSE261085,Spatial transcriptome sequencing of the human corpus cavernosum with normal erectile function,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0006609,corpus cavernosum,corpus cavernosum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,BMK S1000,GEO series text (assay_final.csv),BMKMANU S1000/S3000,sequencing-based,other,,,spot,2292759,58735,counts,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,zero_count_observations,VERIFIED,,,,39299236,,GSM8134145,,,train,sda-all,samples/GSE261085/GSM8134145,sda-tissue-disease-2.3,"{""organ"": 0.38, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8145250,GSE261487,GSE261487,Spatial transcriptome sequencing of the rat corpus cavernosum with normal erectile function,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,other,luna,UBERON:0006609,corpus cavernosum,corpus cavernosum,primary tissue,,,normal,luna,,normal,not stated,luna,not stated,,unknown,,,,,,BMK S1000,release v3,BMKMANU S1000,sequencing-based,BMKMANU S1000,,,,2823,32883,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39299236,,GSM8145250,,,train,hesrt,samples/GSE261487/GSM8145250,sda-tissue-disease-2.4,"{""organ"": 0.84, ""sample_kind"": 0.8300000000000001, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8146484,GSE261545,GSE261545,Histopathological-based analysis of human kidney spatial transcriptomics data: toward precision pathology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,luna,diabetic nephropathy,chronic kidney disease,adult,age rule: age in years,not stated,33 years,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2802,18085,counts,pixel,4.812409077079983,platform_constant,True,H&E,4.812409077079983,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39097165,,GSM8146484,,,train,hesrt,samples/GSE261545/GSM8146484,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM8153336,GSE261872,GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,,Col4a3+/- Vehicle,adult,age rule: age with unit,adult,25 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2709,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.4999915831289341,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40059824,,GSM8153336,,,train,hesrt,samples/GSE261872/GSM8153336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8153336,GSE261872,GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,,Col4a3+/- Vehicle,adult,age rule: age with unit,adult,25 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2709,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.49999158312893416,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40059824,,GSM8153336,,,train,hesrt,samples/GSE261872/GSM8153336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8153337,GSE261872,GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,,Col4a3+/- Nicotinamide riboside,adult,age rule: age with unit,adult,25 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1921,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.500008967578919,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40059824,,GSM8153337,,,train,hesrt,samples/GSE261872/GSM8153337,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8153338,GSE261872,GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,Alport syndrome,Col4a3-/- Vehicle,adult,age rule: age with unit,adult,25 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1474,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.500008967578919,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40059824,,GSM8153338,,,train,hesrt,samples/GSE261872/GSM8153338,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8153339,GSE261872,GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,Alport syndrome,Col4a3-/- Nicotinamide riboside,adult,age rule: age with unit,adult,25 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2644,32285,counts,pixel,0.3787851613880087,platform_constant,True,H&E,0.499993516198358,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40059824,,GSM8153339,,,train,hesrt,samples/GSE261872/GSM8153339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3861,7 +3861,7 @@ GSM8169583,GSE262430,GSE262430,Regional and Cell Specific Bioactivity of Injecta GSM8169584,GSE262430,GSE262430,Regional and Cell Specific Bioactivity of Injectable ECM Biomaterials in MI through Spatial and Single Nucleus Transcriptomics,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,IR surgery,intramyocardial injection of ECM hydrogel,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3929,25399,counts,pixel,4.25597190699202,platform_constant,True,H&E,4.25597190699202,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41285846,,GSM8169584,,,val,hesrt,samples/GSE262430/GSM8169584,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8169585,GSE262430,GSE262430,Regional and Cell Specific Bioactivity of Injectable ECM Biomaterials in MI through Spatial and Single Nucleus Transcriptomics,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,IR surgery,intramyocardial injection of ECM hydrogel,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2593,25399,counts,pixel,4.203448146269752,platform_constant,True,H&E,4.203448146269752,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41285846,,GSM8169585,,,val,hesrt,samples/GSE262430/GSM8169585,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8171818,GSE262569,GSE262569,Smooth muscle-derived resident vascular adventitial progenitor cell contribution to cardiac fibrosis and inflammation is dependent on KLF4 [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Saline 4-Week,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1769,32574,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.9651846736715086,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,the fluorescence should be stated,,,GSM8171818,,,train,sda-all,samples/GSE262569/GSM8171818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8171819,GSE262569,GSE262569,Smooth muscle-derived resident vascular adventitial progenitor cell contribution to cardiac fibrosis and inflammation is dependent on KLF4 [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,perturbation,luna,,AngII 4-Week,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2622,32574,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.992817172559564,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,the fluorescence should be stated,,,GSM8171819,,,train,sda-all,samples/GSE262569/GSM8171819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8171819,GSE262569,GSE262569,Smooth muscle-derived resident vascular adventitial progenitor cell contribution to cardiac fibrosis and inflammation is dependent on KLF4 [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,perturbation,luna,,AngII 4-Week,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2622,32574,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.9928171725595636,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,the fluorescence should be stated,,,GSM8171819,,,train,sda-all,samples/GSE262569/GSM8171819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8182904,GSE262998,GSE262998,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Sarcoid Lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,660,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.88927179530109,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8182904,,,train,sda-all,samples/GSE262998/GSM8182904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8182905,GSE262998,GSE262998,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Sarcoid Lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1859,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.8843875524453697,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8182905,,,train,sda-all,samples/GSE262998/GSM8182905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8182906,GSE262998,GSE262998,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Sarcoid Lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1051,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.890638332560795,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8182906,,,train,sda-all,samples/GSE262998/GSM8182906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3874,19 +3874,19 @@ GSM8184303,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance GSM8184304,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.177050334329818,platform_constant,True,H&E,10.177050334329818,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184304,,,train,hesrt,samples/GSE263034/GSM8184304,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8184305,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.69675579679064,platform_constant,True,H&E,10.69675579679064,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184305,,,train,hesrt,samples/GSE263034/GSM8184305,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8184306,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,8.222903640285452,platform_constant,True,H&E,8.222903640285452,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184306,,,train,hesrt,samples/GSE263034/GSM8184306,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8184307,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,9.680247158006637,platform_constant,True,H&E,9.680247158006637,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184307,,,train,hesrt,samples/GSE263034/GSM8184307,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8184307,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,9.680247158006635,platform_constant,True,H&E,9.680247158006635,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184307,,,train,hesrt,samples/GSE263034/GSM8184307,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8184308,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.62915681510135,platform_constant,True,H&E,10.62915681510135,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184308,,,train,hesrt,samples/GSE263034/GSM8184308,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8184309,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,14.46942691558419,platform_constant,True,H&E,14.46942691558419,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184309,,,train,hesrt,samples/GSE263034/GSM8184309,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8184310,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.086504850478615,platform_constant,True,H&E,10.086504850478615,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184310,,,train,hesrt,samples/GSE263034/GSM8184310,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8184310,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.086504850478617,platform_constant,True,H&E,10.086504850478617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184310,,,train,hesrt,samples/GSE263034/GSM8184310,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8184311,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,AN1792 Immunized AD (iAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,9.680247158006528,platform_constant,True,H&E,9.680247158006528,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184311,,,train,hesrt,samples/GSE263034/GSM8184311,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8184312,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,12.66208644488852,platform_constant,True,H&E,12.66208644488852,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184312,,,train,hesrt,samples/GSE263034/GSM8184312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8184313,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,12.436032983035677,platform_constant,True,H&E,12.436032983035677,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184313,,,train,hesrt,samples/GSE263034/GSM8184313,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8184314,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,11.393140193817285,platform_constant,True,H&E,11.393140193817285,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184314,,,train,hesrt,samples/GSE263034/GSM8184314,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8184315,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,9.78075901637602,platform_constant,True,H&E,9.78075901637602,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184315,,,train,hesrt,samples/GSE263034/GSM8184315,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8184312,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,12.662086444888521,platform_constant,True,H&E,12.662086444888521,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184312,,,train,hesrt,samples/GSE263034/GSM8184312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8184313,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,12.436032983035675,platform_constant,True,H&E,12.436032983035675,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184313,,,train,hesrt,samples/GSE263034/GSM8184313,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8184314,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,11.393140193817283,platform_constant,True,H&E,11.393140193817283,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184314,,,train,hesrt,samples/GSE263034/GSM8184314,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8184315,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,9.780759016376019,platform_constant,True,H&E,9.780759016376019,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184315,,,train,hesrt,samples/GSE263034/GSM8184315,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8184316,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,11.001881113189224,platform_constant,True,H&E,11.001881113189224,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184316,,,train,hesrt,samples/GSE263034/GSM8184316,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8184317,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,Alzheimer's disease,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.62915681510146,platform_constant,True,H&E,10.62915681510146,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184317,,,train,hesrt,samples/GSE263034/GSM8184317,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8184318,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,,,normal,luna,,Non-Neurological Disease (NND),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,12.98669571985796,platform_constant,True,H&E,12.98669571985796,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184318,,,train,hesrt,samples/GSE263034/GSM8184318,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8184319,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,,,normal,luna,,Non-Neurological Disease (NND),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.45014130511858,platform_constant,True,H&E,10.45014130511858,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184319,,,train,hesrt,samples/GSE263034/GSM8184319,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8184319,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,,,normal,luna,,Non-Neurological Disease (NND),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.450141305118581,platform_constant,True,H&E,10.450141305118581,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184319,,,train,hesrt,samples/GSE263034/GSM8184319,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8184320,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,,,normal,luna,,Non-Neurological Disease (NND),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4488,18085,counts,pixel,8.891429813877663,platform_constant,True,H&E,8.891429813877663,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184320,,,train,hesrt,samples/GSE263034/GSM8184320,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8184321,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,,,normal,luna,,Non-Neurological Disease (NND),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4687,18085,counts,pixel,13.215280191943878,platform_constant,True,H&E,13.215280191943878,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184321,,,train,hesrt,samples/GSE263034/GSM8184321,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8184322,GSE263034,GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001870,frontal cortex,Frontal Cortex,primary tissue,,,normal,luna,,Non-Neurological Disease (NND),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4332,18085,counts,pixel,12.133697678222337,platform_constant,True,H&E,12.133697678222337,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40050704,,GSM8184322,,,train,hesrt,samples/GSE263034/GSM8184322,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3906,9 +3906,9 @@ GSM8675579,GSE263079,GSE263079,Microglial mechanisms drive amyloid-β clearance GSM8675582,GSE263079,GSE263079,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006088,inferior parietal cortex,Left Inferior Parietal Lobule,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13299,18120,counts,um,1.0,verified,False,,,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,,,,40050704,,CG-3c3335769421,library_alias,GSM8675590,train,sda-all,samples/GSE263079/GSM8675582,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8675583,GSE263079,GSE263079,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Posterior Hippocampus,primary tissue,MONDO:0004975;MONDO:0019065,Alzheimer disease;amyloidosis,disease,luna,,Non-Immunized AD (nAD),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10003,18120,counts,um,1.0,verified,False,,,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,,,,40050704,,CG-cc036fae2592,library_alias,GSM8675591,train,sda-all,samples/GSE263079/GSM8675583,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM8185653,GSE263088,GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Vehicle,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2716,19465,counts,um,1.0,verified,True,H&E-like (heuristic),3.8958036958173055,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8185653,,,train,sda-all,samples/GSE263088/GSM8185653,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8185654,GSE263088,GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019338,sarcoidosis,disease,mondo_predicate (Luna: perturbation),,"Rapamycin, 8h",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2276,19465,counts,um,1.0,verified,True,H&E-like (heuristic),3.92669046131196,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8185654,,,train,sda-all,samples/GSE263088/GSM8185654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8185654,GSE263088,GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019338,sarcoidosis,disease,mondo_predicate (Luna: perturbation),,"Rapamycin, 8h",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2276,19465,counts,um,1.0,verified,True,H&E-like (heuristic),3.9266904613119595,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8185654,,,train,sda-all,samples/GSE263088/GSM8185654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8185655,GSE263088,GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019338,sarcoidosis,disease,mondo_predicate (Luna: perturbation),,"Rapamycin, 2h",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2791,19465,counts,um,1.0,verified,True,H&E-like (heuristic),4.001259568355681,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8185655,,,train,sda-all,samples/GSE263088/GSM8185655,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8185656,GSE263088,GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019338,sarcoidosis,disease,mondo_predicate (Luna: perturbation),,Vehicle,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2174,19465,counts,um,1.0,verified,True,H&E-like (heuristic),3.896028411279148,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8185656,,,train,sda-all,samples/GSE263088/GSM8185656,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM8185656,GSE263088,GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019338,sarcoidosis,disease,mondo_predicate (Luna: perturbation),,Vehicle,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2174,19465,counts,um,1.0,verified,True,H&E-like (heuristic),3.8960284112791475,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8185656,,,train,sda-all,samples/GSE263088/GSM8185656,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8187469,GSE263196,GSE263196,Spatial transcriptomic sequencing data of human small cell lung cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,tumour tissue,MONDO:0008433,small cell lung carcinoma,disease,luna,small cell lung cancer,No treatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3860,33542,counts,um,1.0,verified,True,undetermined,13.590174146641075,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8187469,,,train,sda-all,samples/GSE263196/GSM8187469,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8187470,GSE263196,GSE263196,Spatial transcriptomic sequencing data of human small cell lung cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,tumour tissue,MONDO:0008433,small cell lung carcinoma,disease,luna,small cell lung cancer,No treatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2709,33542,counts,um,1.0,verified,True,H&E-like (heuristic),14.042014367231154,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8187470,,,train,sda-all,samples/GSE263196/GSM8187470,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8187471,GSE263196,GSE263196,Spatial transcriptomic sequencing data of human small cell lung cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,tumour tissue,MONDO:0008433,small cell lung carcinoma,disease,luna,small cell lung cancer,No treatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3030,33542,counts,um,1.0,verified,True,H&E-like (heuristic),13.835421726948812,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8187471,,,train,sda-all,samples/GSE263196/GSM8187471,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -3947,10 +3947,10 @@ GSM8199188,GSE263793,GSE263793,Microglia - astrocyte cross-talk in the amyloid p GSM8199189,GSE263793,GSE263793,Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer's disease mouse model as revealed by spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,,primary tissue,MONDO:0019065,amyloidosis,disease,luna,AD,,aged,age rule: age with unit,aged,18M,male,male,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,21404,960,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,38819990,,GSM8199189,,,train,sda-all,samples/GSE263793/GSM8199189,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8200276,GSE263860,GSE263860,"Multi-omics sequencing reveals the signature of the genome, cell composition and transcriptome of nodal RDD [ST]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,RDD lesion,tumour tissue,,,disease,luna,Rosai-Dorfman disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3472,58825,counts,pixel,4.056830777646162,platform_constant,True,H&E,4.056830777646162,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8200276,,,train,hesrt,samples/GSE263860/GSM8200276,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.55, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8207499,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Non-recurrent,adult,age rule: bare number read as years,adult,51,female,female,GSE263920:GSM8207499,GSM8207499,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3496,36601,counts,pixel,2.7236735535142165,platform_constant,True,H&E,2.7236735535142165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207499,,,val,hesrt,samples/GSE263920/GSM8207499,sda-tissue-disease-2.3,"{""organ"": 0.71, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8207500,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,,,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Non-recurrent,aged,age rule: bare number read as years,aged,65,female,female,GSE263920:GSM8207500,GSM8207500,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3598,36601,counts,pixel,2.631578947368421,platform_constant,True,H&E,2.631578947368421,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207500,,,val,hesrt,samples/GSE263920/GSM8207500,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8207500,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,,,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Non-recurrent,aged,age rule: bare number read as years,aged,65,female,female,GSE263920:GSM8207500,GSM8207500,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3598,36601,counts,pixel,2.6315789473684212,platform_constant,True,H&E,2.6315789473684212,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207500,,,val,hesrt,samples/GSE263920/GSM8207500,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8207501,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Non-recurrent,adult,age rule: bare number read as years,adult,64,female,female,GSE263920:GSM8207501,GSM8207501,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2632,36601,counts,pixel,2.7236735535142165,platform_constant,True,H&E,2.7236735535142165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207501,,,val,hesrt,samples/GSE263920/GSM8207501,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.30000000000000004, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8207502,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,45,female,female,GSE263920:GSM8207502,GSM8207502,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3613,36601,counts,pixel,2.789641763258353,platform_constant,True,H&E,2.789641763258353,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207502,,,val,hesrt,samples/GSE263920/GSM8207502,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8207503,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,61,female,female,GSE263920:GSM8207503,GSM8207503,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4033,36601,counts,pixel,2.789641763258353,platform_constant,True,H&E,2.789641763258353,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207503,,,val,hesrt,samples/GSE263920/GSM8207503,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.92, ""disease_status"": 0.99, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8207502,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,45,female,female,GSE263920:GSM8207502,GSM8207502,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3613,36601,counts,pixel,2.7896417632583534,platform_constant,True,H&E,2.7896417632583534,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207502,,,val,hesrt,samples/GSE263920/GSM8207502,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8207503,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,61,female,female,GSE263920:GSM8207503,GSM8207503,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4033,36601,counts,pixel,2.7896417632583534,platform_constant,True,H&E,2.7896417632583534,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207503,,,val,hesrt,samples/GSE263920/GSM8207503,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.92, ""disease_status"": 0.99, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8207504,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,,,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,49,female,female,GSE263920:GSM8207504,GSM8207504,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4555,36601,counts,pixel,2.9411764705882355,platform_constant,True,H&E,2.9411764705882355,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207504,,,val,hesrt,samples/GSE263920/GSM8207504,sda-tissue-disease-2.3,"{""organ"": 0.43, ""sample_kind"": 0.74, ""disease_status"": 1.0, ""uberon"": 0.49, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation GSM8207505,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,,,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,49,female,female,GSE263920:GSM8207505,GSM8207505,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3100,36601,counts,pixel,2.7236735535142165,platform_constant,True,H&E,2.7236735535142165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207505,,,val,hesrt,samples/GSE263920/GSM8207505,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 0.76, ""disease_status"": 1.0, ""uberon"": 0.31, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8207506,GSE263920,GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,high-grade serous ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,high-grade serous ovarian cancer,Recurrent,adult,age rule: bare number read as years,adult,34,female,female,GSE263920:GSM8207506,GSM8207506,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4520,36601,counts,pixel,2.7777777777777777,platform_constant,True,H&E,2.7777777777777777,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39135097,,GSM8207506,,,val,hesrt,samples/GSE263920/GSM8207506,sda-tissue-disease-2.3,"{""organ"": 0.53, ""sample_kind"": 0.93, ""disease_status"": 1.0, ""uberon"": 0.41000000000000003, ""life_stage"": 0.98}",organ;uberon,low_confidence_annotation @@ -3967,19 +3967,19 @@ GSM8216248,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gen GSM8216249,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1681,36601,counts,pixel,4.142251447535965,platform_constant,True,H&E,4.142251447535965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216249,,,train,hesrt,samples/GSE264331/GSM8216249,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8216252,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005148,type 2 diabetes mellitus,disease,luna,T2D,T2D,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,702,36601,counts,pixel,0.2923926611579401,platform_constant,True,H&E,0.500010119615907,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216252,,,train,hesrt,samples/GSE264331/GSM8216252,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8216253,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005148,type 2 diabetes mellitus,disease,luna,T2D,T2D,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,721,36601,counts,pixel,0.2923926611579401,platform_constant,True,H&E,0.5000054916841026,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216253,,,train,hesrt,samples/GSE264331/GSM8216253,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8216254,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1690,36601,counts,pixel,0.2923864119426126,platform_constant,True,H&E,0.5000125783953269,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216254,,,train,hesrt,samples/GSE264331/GSM8216254,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8216254,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1690,36601,counts,pixel,0.29238641194261267,platform_constant,True,H&E,0.5000125783953269,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216254,,,train,hesrt,samples/GSE264331/GSM8216254,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8216255,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1575,36601,counts,pixel,0.2923926611579401,platform_constant,True,H&E,0.4999980259939613,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216255,,,train,hesrt,samples/GSE264331/GSM8216255,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8216256,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2168,36601,counts,pixel,0.2923964108794761,platform_constant,True,H&E,0.50000159555097,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216256,,,train,hesrt,samples/GSE264331/GSM8216256,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8216257,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1934,36601,counts,pixel,0.2923964108794761,platform_constant,True,H&E,0.4999992844196634,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216257,,,train,hesrt,samples/GSE264331/GSM8216257,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8216256,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2168,36601,counts,pixel,0.29239641087947615,platform_constant,True,H&E,0.50000159555097,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216256,,,train,hesrt,samples/GSE264331/GSM8216256,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8216257,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,NGT,NGT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1934,36601,counts,pixel,0.29239641087947615,platform_constant,True,H&E,0.4999992844196634,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216257,,,train,hesrt,samples/GSE264331/GSM8216257,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8216258,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005148,type 2 diabetes mellitus,disease,luna,T2D,T2D,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2284,36601,counts,pixel,0.2915439504656608,platform_constant,True,H&E,0.5000054280006929,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216258,,,train,hesrt,samples/GSE264331/GSM8216258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8216259,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005148,type 2 diabetes mellitus,disease,luna,T2D,T2D,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2257,36601,counts,pixel,0.2923964108794761,platform_constant,True,H&E,0.4999941301106646,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216259,,,train,hesrt,samples/GSE264331/GSM8216259,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8216268,GSE264334,GSE264334,Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Renal Biopsy,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,Renal Disease Biopsy: IgAN,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,30802,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999558063638835,VERIFIED,ABSENT,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,38898271,,GSM8216268,,,train,sda-all,samples/GSE264334/GSM8216268,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8216259,GSE264331,GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005148,type 2 diabetes mellitus,disease,luna,T2D,T2D,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2257,36601,counts,pixel,0.29239641087947615,platform_constant,True,H&E,0.4999941301106646,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40890166,,GSM8216259,,,train,hesrt,samples/GSE264331/GSM8216259,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8216268,GSE264334,GSE264334,Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Renal Biopsy,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,Renal Disease Biopsy: IgAN,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,30802,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49995580636388354,VERIFIED,ABSENT,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,38898271,,GSM8216268,,,train,sda-all,samples/GSE264334/GSM8216268,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8217624,GSE264398,GSE264398,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Fetal lung tissue,primary tissue,,,normal,luna,,,fetal,luna,fetal,15 gestational weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3949,18085,counts,pixel,5.732491793201414,platform_constant,True,H&E,5.732491793201414,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003323,,GSM8217624,,,train,hesrt,samples/GSE264398/GSM8217624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8217625,GSE264398,GSE264398,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Fetal lung tissue,primary tissue,,,normal,luna,,,fetal,luna,fetal,18 gestational weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4002,18085,counts,pixel,6.537362568589588,platform_constant,True,H&E,6.537362568589588,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39003323,,GSM8217625,,,train,hesrt,samples/GSE264398/GSM8217625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8217893,GSE264425,GSE264425,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,fetal lung tissue,primary tissue,,,normal,luna,,,fetal,luna,fetal,GW 15,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,864688,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999942768188269,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39003323,,GSM8217893,,,train,sda-all,samples/GSE264425/GSM8217893,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8217893,GSE264425,GSE264425,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,fetal lung tissue,primary tissue,,,normal,luna,,,fetal,luna,fetal,GW 15,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,864688,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999427681882697,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39003323,,GSM8217893,,,train,sda-all,samples/GSE264425/GSM8217893,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8217894,GSE264425,GSE264425,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,fetal lung tissue,primary tissue,,,normal,luna,,,fetal,luna,fetal,GW 18,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,980410,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896351575456,VERIFIED,ABSENT,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,39003323,,GSM8217894,,,train,sda-all,samples/GSE264425/GSM8217894,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8226199,GSE264692,GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,normal,neurotypical,not stated,luna,not stated,,unknown,,GSE264692:Br2720,Br2720,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3762,36601,counts,pixel,4.451057817558416,platform_constant,True,H&E,4.451057817558416,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8226199,,,train,hesrt,samples/GSE264692/GSM8226199,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8226200,GSE264692,GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,normal,neurotypical,not stated,luna,not stated,,unknown,,GSE264692:Br2743,Br2743,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2618,36601,counts,pixel,4.548916972217151,platform_constant,True,H&E,4.548916972217151,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8226200,,,train,hesrt,samples/GSE264692/GSM8226200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8226200,GSE264692,GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,normal,neurotypical,not stated,luna,not stated,,unknown,,GSE264692:Br2743,Br2743,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2618,36601,counts,pixel,4.5489169722171505,platform_constant,True,H&E,4.5489169722171505,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8226200,,,train,hesrt,samples/GSE264692/GSM8226200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8226201,GSE264692,GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,normal,neurotypical,not stated,luna,not stated,,unknown,,GSE264692:Br3942,Br3942,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,36601,counts,pixel,4.548706784421283,platform_constant,True,H&E,4.548706784421283,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8226201,,,train,hesrt,samples/GSE264692/GSM8226201,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8226202,GSE264692,GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,normal,neurotypical,not stated,luna,not stated,,unknown,,GSE264692:Br6423,Br6423,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3675,36601,counts,pixel,5.259746926708571,platform_constant,True,H&E,5.259746926708571,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8226202,,,train,hesrt,samples/GSE264692/GSM8226202,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8226203,GSE264692,GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,hippocampus,primary tissue,,,normal,luna,normal,neurotypical,not stated,luna,not stated,,unknown,,GSE264692:Br6432,Br6432,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4697,36601,counts,pixel,4.548736425703956,platform_constant,True,H&E,4.548736425703956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8226203,,,train,hesrt,samples/GSE264692/GSM8226203,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -4056,14 +4056,14 @@ GSM8253803,GSE266688,GSE266688,Single cell approaches define forebrain neural st GSM8253804,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,normal,luna,,control,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.4.0.6,cell,118939,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999963510752165,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8253804,,,train,sda-all,samples/GSE266689/GSM8253804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM8253805,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,normal,luna,,control,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.4.0.6,cell,111183,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999939169789284,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8253805,,,train,sda-all,samples/GSE266689/GSM8253805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8253806,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,disease,luna,,cuprizone-rapamycin,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.4.0.6,cell,127215,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948328424534,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8253806,,,train,sda-all,samples/GSE266689/GSM8253806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8253807,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,disease,luna,,cuprizone-rapamycin,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.4.0.6,cell,120337,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917314370762,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8253807,,,train,sda-all,samples/GSE266689/GSM8253807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.91, ""life_stage"": 0.99}",, +GSM8253807,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,disease,luna,,cuprizone-rapamycin,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.4.0.6,cell,120337,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999173143707626,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8253807,,,train,sda-all,samples/GSE266689/GSM8253807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.91, ""life_stage"": 0.99}",, GSM8647384,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,normal,luna,,,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,116173,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999993908975733,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647384,,,train,sda-all,samples/GSE266689/GSM8647384,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8647385,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,normal,luna,,,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,116358,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000097456388266,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647385,,,train,sda-all,samples/GSE266689/GSM8647385,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8647386,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,normal,luna,,,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,110739,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000097059737032,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647386,,,train,sda-all,samples/GSE266689/GSM8647386,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM8647387,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,disease,luna,,cuprizone-rapamycin,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,135899,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647387,,,train,sda-all,samples/GSE266689/GSM8647387,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8647388,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,disease,luna,,cuprizone-rapamycin,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,122729,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000096519772764,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647388,,,train,sda-all,samples/GSE266689/GSM8647388,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8647389,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,disease,luna,,cuprizone-rapamycin,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,159849,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500009697439876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647389,,,train,sda-all,samples/GSE266689/GSM8647389,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8647390,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,perturbation,luna,,BSA infused,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,133619,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999951726801279,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647390,,,train,sda-all,samples/GSE266689/GSM8647390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8647390,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,perturbation,luna,,BSA infused,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,133619,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999517268012794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647390,,,train,sda-all,samples/GSE266689/GSM8647390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8647391,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,perturbation,luna,,BSA infused,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,123765,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499998620917917,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647391,,,train,sda-all,samples/GSE266689/GSM8647391,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8647392,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,perturbation,luna,,BSA infused,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,121071,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000110344827586,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647392,,,train,sda-all,samples/GSE266689/GSM8647392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8647393,GSE266689,GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,brain,primary tissue,,,perturbation,luna,,BSA infused,adult,luna,adult,adult,mixed,M/F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.9.0.0,cell,121843,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000036907995749,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39823226;40780964,,GSM8647393,,,train,sda-all,samples/GSE266689/GSM8647393,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -4077,14 +4077,14 @@ GSM8257562,GSE266969,GSE266969,Spatial transcriptomics profile at single cell le GSM8257563,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37985,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000129172264132,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257563,,,train,sda-all,samples/GSE266969/GSM8257563,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.74}",, GSM8257564,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,juvenile,luna,juvenile,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23109,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000167785234899,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257564,,,train,sda-all,samples/GSE266969/GSM8257564,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.56}",life_stage,low_confidence_annotation GSM8257565,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,98705,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500010350742296,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257565,,,train,sda-all,samples/GSE266969/GSM8257565,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.86}",, -GSM8257566,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38244,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999879807692308,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257566,,,train,sda-all,samples/GSE266969/GSM8257566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, +GSM8257566,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38244,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998798076923084,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257566,,,train,sda-all,samples/GSE266969/GSM8257566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM8257567,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,91954,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025815778604,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257567,,,train,sda-all,samples/GSE266969/GSM8257567,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.86}",, GSM8257568,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,83416,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999862372694742,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257568,,,train,sda-all,samples/GSE266969/GSM8257568,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8257569,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60974,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257569,,,train,sda-all,samples/GSE266969/GSM8257569,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8257570,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,112292,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999827839500504,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257570,,,train,sda-all,samples/GSE266969/GSM8257570,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8257571,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,124619,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000012903891814,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257571,,,train,sda-all,samples/GSE266969/GSM8257571,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8257572,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,39076,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000236155390246,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257572,,,train,sda-all,samples/GSE266969/GSM8257572,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8257573,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,134142,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999870947759652,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257573,,,train,sda-all,samples/GSE266969/GSM8257573,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8257573,GSE266969,GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,Glioblastoma,Ntva-INK4a_ARF−/−,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,134142,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998709477596526,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,39255775,,GSM8257573,,,train,sda-all,samples/GSE266969/GSM8257573,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8263823,GSE267315,GSE267315,Spatial transcriptomic characteristics of the aging human ovary,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,ovary,luna,UBERON:0000992,ovary,ovary,primary tissue,,,normal,luna,,,juvenile,age rule: bare number read as years,juvenile,12,unknown,,,,,,Stereo-seq,release v3,scStereo-seq,sequencing-based,scStereo-seq,,,bin,78790,29825,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41243550,,GSM8263823,,,train,sda-all,samples/GSE267315/GSM8263823,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8263824,GSE267315,GSE267315,Spatial transcriptomic characteristics of the aging human ovary,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,ovary,luna,UBERON:0000992,ovary,ovary,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32,unknown,,,,,,Stereo-seq,release v3,scStereo-seq,sequencing-based,scStereo-seq,,,bin,61577,31922,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41243550,,GSM8263824,,,train,sda-all,samples/GSE267315/GSM8263824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8263825,GSE267315,GSE267315,Spatial transcriptomic characteristics of the aging human ovary,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,ovary,luna,UBERON:0000992,ovary,ovary,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,34,unknown,,,,,,Stereo-seq,release v3,scStereo-seq,sequencing-based,scStereo-seq,,,bin,50340,31016,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41243550,,GSM8263825,,,train,sda-all,samples/GSE267315/GSM8263825,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4097,8 +4097,8 @@ GSM8268371,GSE267534,GSE267534,TLR4-dependent fibroblast-monocyte axis in tumor- GSM8268372,GSE267534,GSE267534,TLR4-dependent fibroblast-monocyte axis in tumor-draining lymph nodes contributes to metastasis in triple-negative breast cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0001097,axillary lymph node,Lymph node (axillary),primary tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,,Tumor mice 67NR,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1954,32285,counts,um,1.0,verified,True,"fluorescence: single channel, grayscale (heuristic)",4.306185796326132,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,the stain / fluorescence should be stated,40957419,,GSM8268372,,,train,sda-all,samples/GSE267534/GSM8268372,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8268373,GSE267534,GSE267534,TLR4-dependent fibroblast-monocyte axis in tumor-draining lymph nodes contributes to metastasis in triple-negative breast cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0001097,axillary lymph node,Lymph node (axillary),primary tissue,MONDO:0005494,triple-negative breast carcinoma,disease,luna,,Tumor mice 4T1,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1652,32285,counts,um,1.0,verified,True,"fluorescence: single channel, grayscale (heuristic)",4.271101254152593,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,the stain / fluorescence should be stated,40957419,,GSM8268373,,,train,sda-all,samples/GSE267534/GSM8268373,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8279107,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4240,17943,counts,pixel,3.9622128599461375,platform_constant,True,H&E,3.9622128599461375,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279107,,,train,hesrt,samples/GSE267806/GSM8279107,sda-tissue-disease-2.3,"{""organ"": 0.61, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8279108,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3452,17943,counts,pixel,3.997444851476677,platform_constant,True,H&E,3.997444851476677,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279108,,,train,hesrt,samples/GSE267806/GSM8279108,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM8279109,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3583,17943,counts,pixel,4.091742232403528,platform_constant,True,H&E,4.091742232403528,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279109,,,train,hesrt,samples/GSE267806/GSM8279109,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8279108,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3452,17943,counts,pixel,3.9974448514766765,platform_constant,True,H&E,3.9974448514766765,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279108,,,train,hesrt,samples/GSE267806/GSM8279108,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM8279109,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3583,17943,counts,pixel,4.0917422324035275,platform_constant,True,H&E,4.0917422324035275,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279109,,,train,hesrt,samples/GSE267806/GSM8279109,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8279110,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3537,17943,counts,pixel,4.06203675876404,platform_constant,True,H&E,4.06203675876404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279110,,,train,hesrt,samples/GSE267806/GSM8279110,sda-tissue-disease-2.3,"{""organ"": 0.6000000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8279111,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3215,17943,counts,pixel,4.053448175843248,platform_constant,True,H&E,4.053448175843248,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279111,,,train,hesrt,samples/GSE267806/GSM8279111,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8279112,GSE267806,GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Desmoplastic Small Round Cell Tumor,tumour tissue,MONDO:0019373,desmoplastic small round cell tumor,disease,luna,Desmoplastic Small Round Cell Tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3697,17943,counts,pixel,4.301034700347972,platform_constant,True,H&E,4.301034700347972,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38781959;40088092,,GSM8279112,,,train,hesrt,samples/GSE267806/GSM8279112,sda-tissue-disease-2.3,"{""organ"": 0.49, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation @@ -4110,7 +4110,7 @@ GSM8281388,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in huma GSM8281389,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4104,32285,counts,pixel,4.094265730366453,platform_constant,True,H&E,4.094265730366453,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281389,,,train,hesrt,samples/GSE267904/GSM8281389,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8281390,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4050,32285,counts,pixel,4.098691971774496,platform_constant,True,H&E,4.098691971774496,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281390,,,train,hesrt,samples/GSE267904/GSM8281390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8281391,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4166,32285,counts,pixel,4.069575883406268,platform_constant,True,H&E,4.069575883406268,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281391,,,train,hesrt,samples/GSE267904/GSM8281391,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8281392,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3831,32285,counts,pixel,3.9941703975375114,platform_constant,True,H&E,3.9941703975375114,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281392,,,train,hesrt,samples/GSE267904/GSM8281392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8281392,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3831,32285,counts,pixel,3.9941703975375105,platform_constant,True,H&E,3.9941703975375105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281392,,,train,hesrt,samples/GSE267904/GSM8281392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8281393,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4444,32285,counts,pixel,4.006204793980877,platform_constant,True,H&E,4.006204793980877,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281393,,,train,hesrt,samples/GSE267904/GSM8281393,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8281394,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3881,32285,counts,pixel,4.033026602886546,platform_constant,True,H&E,4.033026602886546,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281394,,,train,hesrt,samples/GSE267904/GSM8281394,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8281395,GSE267904,GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,pulmonary fibrosis,Bleomycin,not stated,luna,not stated,8 weeks + 5 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3931,32285,counts,pixel,4.031603548868118,platform_constant,True,H&E,4.031603548868118,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38951642;41501078,,GSM8281395,,,train,hesrt,samples/GSE267904/GSM8281395,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4259,33 +4259,33 @@ GSM8289551,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PD GSM8289552,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2991,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.986661333911779,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289552,,,train,sda-all,samples/GSE268312/GSM8289552,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289553,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2563,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.92133822598847,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289553,,,train,sda-all,samples/GSE268312/GSM8289553,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289554,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3461,68886,counts,um,1.0,verified,True,H&E-like (heuristic),4.09295384059742,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289554,,,train,sda-all,samples/GSE268312/GSM8289554,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8289555,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3670,68886,counts,um,1.0,verified,True,H&E-like (heuristic),4.094493674395141,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289555,,,train,sda-all,samples/GSE268312/GSM8289555,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8289555,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3670,68886,counts,um,1.0,verified,True,H&E-like (heuristic),4.0944936743951414,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289555,,,train,sda-all,samples/GSE268312/GSM8289555,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289556,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4043,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.880142847860696,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289556,,,train,sda-all,samples/GSE268312/GSM8289556,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8289557,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3973,68886,counts,um,1.0,verified,True,H&E-like (heuristic),4.01898030954403,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289557,,,train,sda-all,samples/GSE268312/GSM8289557,sda-tissue-disease-2.4,"{""organ"": 0.98, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM8289558,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3137,68886,counts,um,1.0,verified,True,H&E-like (heuristic),4.110725302303756,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289558,,,train,sda-all,samples/GSE268312/GSM8289558,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289559,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2839,68886,counts,um,1.0,verified,True,H&E-like (heuristic),4.11203517045289,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289559,,,train,sda-all,samples/GSE268312/GSM8289559,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8289560,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2789,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9274236364735726,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289560,,,train,sda-all,samples/GSE268312/GSM8289560,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8289561,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3633,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.961619460709787,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289561,,,train,sda-all,samples/GSE268312/GSM8289561,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8289561,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3633,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9616194607097874,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289561,,,train,sda-all,samples/GSE268312/GSM8289561,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289562,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2695,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9160169941909313,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289562,,,train,sda-all,samples/GSE268312/GSM8289562,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289563,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3516,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9165007623954353,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289563,,,train,sda-all,samples/GSE268312/GSM8289563,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289564,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3261,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.916405626523529,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289564,,,train,sda-all,samples/GSE268312/GSM8289564,sda-tissue-disease-2.4,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8289565,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3364,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.915008513292004,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289565,,,train,sda-all,samples/GSE268312/GSM8289565,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8289566,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3515,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.999599621775,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289566,,,train,sda-all,samples/GSE268312/GSM8289566,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8289567,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3641,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.975377584113092,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289567,,,train,sda-all,samples/GSE268312/GSM8289567,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8289566,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3515,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9995996217750003,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289566,,,train,sda-all,samples/GSE268312/GSM8289566,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8289567,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,True,True,GEO organism field,Homo sapiens/Mus musculus xenograft,,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3641,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9753775841130916,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289567,,,train,sda-all,samples/GSE268312/GSM8289567,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8289568,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4126,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.92916736123975,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289568,,,train,sda-all,samples/GSE268312/GSM8289568,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8289569,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3510,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.97596015379836,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8289569,,,train,sda-all,samples/GSE268312/GSM8289569,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8764276,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3511,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.913264070524145,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764276,,,train,sda-all,samples/GSE268312/GSM8764276,sda-tissue-disease-2.4,"{""organ"": 0.96, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM8764277,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens -Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3291,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.915680673511965,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764277,,,train,sda-all,samples/GSE268312/GSM8764277,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3291,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9156806735119645,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764277,,,train,sda-all,samples/GSE268312/GSM8764277,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8764278,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens -Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4181,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.903965335265884,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764278,,,train,sda-all,samples/GSE268312/GSM8764278,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4181,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9039653352658843,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764278,,,train,sda-all,samples/GSE268312/GSM8764278,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM8764279,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3845,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.91900502829734,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764279,,,train,sda-all,samples/GSE268312/GSM8764279,sda-tissue-disease-2.4,"{""organ"": 0.98, ""sample_kind"": 0.9, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8764280,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens -Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3329,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.900445403441108,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764280,,,train,sda-all,samples/GSE268312/GSM8764280,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.93}",, +Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3329,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9004454034411076,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764280,,,train,sda-all,samples/GSE268312/GSM8764280,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.93}",, GSM8764281,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens -Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2509,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9032682091849695,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764281,,,train,sda-all,samples/GSE268312/GSM8764281,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2509,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.9032682091849704,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764281,,,train,sda-all,samples/GSE268312/GSM8764281,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8764282,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens Mus musculus",,brain,luna,UBERON:0000955,brain,Brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3287,68886,counts,um,1.0,verified,True,H&E-like (heuristic),3.902184198336741,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40836081,,GSM8764282,,,train,sda-all,samples/GSE268312/GSM8764282,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8764283,GSE268312,GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,Homo sapiens,9606,human,Homo sapiens;Mus musculus,9606;10090,,False,True,GEO organism field,"Homo sapiens @@ -4305,9 +4305,9 @@ GSM8294434,GSE268577,GSE268577,Spatial transcriptomics of 3 H3.3K27M pDMG sample GSM8294435,GSE268577,GSE268577,Spatial transcriptomics of 3 H3.3K27M pDMG samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Midline,tumour tissue,MONDO:0021042,glioma,disease,luna,Diffusion Midline Glioma (DMG),H3.3 K27M,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,856,17943,counts,pixel,4.032895034268122,platform_constant,True,H&E,4.032895034268122,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39373720,10.7554/elife.91313.3,GSM8294435,,,train,hesrt,samples/GSE268577/GSM8294435,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8294436,GSE268577,GSE268577,Spatial transcriptomics of 3 H3.3K27M pDMG samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Midline,tumour tissue,MONDO:0021042,glioma,disease,luna,Diffusion Midline Glioma (DMG),H3.3 K27M,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,217,17943,counts,pixel,3.936842092665259,platform_constant,True,H&E,3.936842092665259,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39373720,10.7554/elife.91313.3,GSM8294436,,,train,hesrt,samples/GSE268577/GSM8294436,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8299015,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797;MONDO:0043975,spinal cord injury;autonomic dysreflexia,disease,mondo_predicate (Luna: perturbation),,"Spinal cord injury, subjected to autonomic dysreflexia",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3746,32285,counts,pixel,3.943705260611831,platform_constant,True,H&E,3.943705260611831,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299015,,,train,hesrt,samples/GSE268779/GSM8299015,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8299016,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797;MONDO:0043975,spinal cord injury;autonomic dysreflexia,disease,mondo_predicate (Luna: perturbation),,"Spinal cord injury, subjected to autonomic dysreflexia",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4243,32285,counts,pixel,3.886951422278512,platform_constant,True,H&E,3.886951422278512,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299016,,,train,hesrt,samples/GSE268779/GSM8299016,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8299016,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797;MONDO:0043975,spinal cord injury;autonomic dysreflexia,disease,mondo_predicate (Luna: perturbation),,"Spinal cord injury, subjected to autonomic dysreflexia",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4243,32285,counts,pixel,3.8869514222785115,platform_constant,True,H&E,3.8869514222785115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299016,,,train,hesrt,samples/GSE268779/GSM8299016,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8299017,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797;MONDO:0043975,spinal cord injury;autonomic dysreflexia,disease,luna,,"Spinal cord injury, subjected to autonomic dysreflexia",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3842,32285,counts,pixel,3.965889055538643,platform_constant,True,H&E,3.965889055538643,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299017,,,train,hesrt,samples/GSE268779/GSM8299017,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8299018,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,Spinal cord injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3985,32285,counts,pixel,3.950318133877457,platform_constant,True,H&E,3.950318133877457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299018,,,train,hesrt,samples/GSE268779/GSM8299018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8299018,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,luna,,Spinal cord injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3985,32285,counts,pixel,3.9503181338774565,platform_constant,True,H&E,3.9503181338774565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299018,,,train,hesrt,samples/GSE268779/GSM8299018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8299019,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,Spinal cord injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3291,32285,counts,pixel,3.9640658728068594,platform_constant,True,H&E,3.9640658728068594,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299019,,,train,hesrt,samples/GSE268779/GSM8299019,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8299020,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797,spinal cord injury,disease,mondo_predicate (Luna: perturbation),,Spinal cord injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3578,32285,counts,pixel,3.9814246036086542,platform_constant,True,H&E,3.9814246036086542,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299020,,,train,hesrt,samples/GSE268779/GSM8299020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8299021,GSE268779,GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,spinal cord,primary tissue,MONDO:0043797;MONDO:0043975,spinal cord injury;autonomic dysreflexia,disease,mondo_predicate (Luna: perturbation),,"Spinal cord injury, subjected to autonomic dysreflexia",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2448,32285,counts,pixel,3.9749923646678087,platform_constant,True,H&E,3.9749923646678087,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8299021,,,train,hesrt,samples/GSE268779/GSM8299021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -4322,14 +4322,14 @@ GSM8305459,GSE269043+GSE269045,GSE269043,Dissecting tissue-specific microenviron GSM8305460,GSE269043+GSE269045,GSE269043,Dissecting tissue-specific microenvironments in acute myeloid leukemia (Spatial),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874,acute myeloid leukemia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1839,19465,counts,um,1.0,verified,True,H&E-like (heuristic),4.108255471479863,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8305460,,,train,sda-all,samples/GSE269043/GSM8305460,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.13, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8305461,GSE269043+GSE269045,GSE269043,Dissecting tissue-specific microenvironments in acute myeloid leukemia (Spatial),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874,acute myeloid leukemia,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2208,19465,counts,um,1.0,verified,True,H&E-like (heuristic),4.296015375569938,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8305461,,,train,sda-all,samples/GSE269043/GSM8305461,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8305462,GSE269043+GSE269045,GSE269043,Dissecting tissue-specific microenvironments in acute myeloid leukemia (Spatial),Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874,acute myeloid leukemia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1794,19465,counts,um,1.0,verified,True,H&E-like (heuristic),4.202606006506583,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8305462,,,train,sda-all,samples/GSE269043/GSM8305462,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.93, ""disease_status"": 0.19, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8305629,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2579,32285,counts,pixel,4.275062588111664,platform_constant,True,H&E,4.275062588111664,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305629,,,train,hesrt,samples/GSE269054/GSM8305629,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8305633,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,,,perturbation,luna,myocardial infarction,30 min I/R surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2757,32285,counts,pixel,4.472597797003624,platform_constant,True,H&E,4.472597797003624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305633,,,train,hesrt,samples/GSE269054/GSM8305633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8305634,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2148,32285,counts,pixel,4.275062588111664,platform_constant,True,H&E,4.275062588111664,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305634,,,train,hesrt,samples/GSE269054/GSM8305634,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8305629,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2579,32285,counts,pixel,4.2750625881116635,platform_constant,True,H&E,4.2750625881116635,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305629,,,train,hesrt,samples/GSE269054/GSM8305629,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8305633,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,,,perturbation,luna,myocardial infarction,30 min I/R surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2757,32285,counts,pixel,4.4725977970036235,platform_constant,True,H&E,4.4725977970036235,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305633,,,train,hesrt,samples/GSE269054/GSM8305633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8305634,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2148,32285,counts,pixel,4.2750625881116635,platform_constant,True,H&E,4.2750625881116635,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305634,,,train,hesrt,samples/GSE269054/GSM8305634,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8305635,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2215,32285,counts,pixel,4.275062588111642,platform_constant,True,H&E,4.275062588111642,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305635,,,train,hesrt,samples/GSE269054/GSM8305635,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8305639,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1052,32285,counts,pixel,4.244223770924469,platform_constant,True,H&E,4.244223770924469,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305639,,,train,hesrt,samples/GSE269054/GSM8305639,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8305640,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2526,32285,counts,pixel,4.18690910740551,platform_constant,True,H&E,4.18690910740551,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305640,,,train,hesrt,samples/GSE269054/GSM8305640,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8305641,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2530,32285,counts,pixel,4.1869091074055005,platform_constant,True,H&E,4.1869091074055005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305641,,,train,hesrt,samples/GSE269054/GSM8305641,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8305642,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2280,32285,counts,pixel,4.472597797003624,platform_constant,True,H&E,4.472597797003624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305642,,,train,hesrt,samples/GSE269054/GSM8305642,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8305642,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2280,32285,counts,pixel,4.4725977970036235,platform_constant,True,H&E,4.4725977970036235,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305642,,,train,hesrt,samples/GSE269054/GSM8305642,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8305643,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2435,32285,counts,pixel,4.275090852894863,platform_constant,True,H&E,4.275090852894863,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305643,,,train,hesrt,samples/GSE269054/GSM8305643,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8305644,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,,,perturbation,luna,myocardial infarction,30 min I/R surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2045,32285,counts,pixel,4.7673042609998415,platform_constant,True,H&E,4.7673042609998415,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305644,,,train,hesrt,samples/GSE269054/GSM8305644,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8305645,GSE269054,GSE269054,Spatially clustered type I interferon responses at injury borderzones,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,myocardial infarction,MI surgery,adult,age rule: age with unit,not stated,10–12 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2409,32285,counts,pixel,4.122810398176053,platform_constant,True,H&E,4.122810398176053,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39198639,,GSM8305645,,,train,hesrt,samples/GSE269054/GSM8305645,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4378,12 +4378,12 @@ GSM8321864,GSE269543,GSE269543,Multi-omics Analysis Revealing the Impact of Exce GSM8321865,GSE269543,GSE269543,Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,high folate,neonatal or infant,age rule: postnatal day,not stated,21 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3202,19465,counts,pixel,4.243684086780514,platform_constant,True,H&E,4.243684086780514,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321865,,,train,hesrt,samples/GSE269543/GSM8321865,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8321866,GSE269543,GSE269543,Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,high folate,neonatal or infant,age rule: postnatal day,not stated,21 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3350,19465,counts,pixel,4.37789481043452,platform_constant,True,H&E,4.37789481043452,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321866,,,train,hesrt,samples/GSE269543/GSM8321866,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8321875,GSE269545,GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,1x PBS injection,adult,age rule: age with unit,not stated,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2208,32285,counts,pixel,3.903846054298088,platform_constant,True,H&E,3.903846054298088,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321875,,,train,hesrt,samples/GSE269545/GSM8321875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.27, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8321876,GSE269545,GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,1x PBS injection,adult,age rule: age with unit,not stated,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2673,32285,counts,pixel,3.893538881057754,platform_constant,True,H&E,3.893538881057754,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321876,,,train,hesrt,samples/GSE269545/GSM8321876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8321876,GSE269545,GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,1x PBS injection,adult,age rule: age with unit,not stated,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2673,32285,counts,pixel,3.8935388810577543,platform_constant,True,H&E,3.8935388810577543,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321876,,,train,hesrt,samples/GSE269545/GSM8321876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8321877,GSE269545,GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0021042,glioma,disease,luna,glioma,"1x 80,000 GL261 cells injection",adult,age rule: age with unit,not stated,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2327,32285,counts,pixel,3.9661318724347616,platform_constant,True,H&E,3.9661318724347616,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321877,,,train,hesrt,samples/GSE269545/GSM8321877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.54, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8321878,GSE269545,GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0021042,glioma,disease,luna,glioma,"1x 80,000 GL261 cells injection",adult,age rule: age with unit,not stated,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2769,32285,counts,pixel,4.050515534656392,platform_constant,True,H&E,4.050515534656392,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8321878,,,train,hesrt,samples/GSE269545/GSM8321878,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.5700000000000001, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM8322399,GSE269576,GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0001828,gingiva,Gingival mucosa,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,126,32285,counts,pixel,3.943223742348813,platform_constant,True,H&E,3.943223742348813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627243,,GSM8322399,,,train,hesrt,samples/GSE269576/GSM8322399,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM8322399,GSE269576,GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0001828,gingiva,Gingival mucosa,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,126,32285,counts,pixel,3.9432237423488132,platform_constant,True,H&E,3.9432237423488132,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627243,,GSM8322399,,,train,hesrt,samples/GSE269576/GSM8322399,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM8322400,GSE269576,GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0001828,gingiva,Gingival mucosa,primary tissue,,,normal,luna,,GF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,128,32285,counts,pixel,3.9178841007178096,platform_constant,True,H&E,3.9178841007178096,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627243,,GSM8322400,,,train,hesrt,samples/GSE269576/GSM8322400,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.79, ""life_stage"": 1.0}",, -GSM8322401,GSE269576,GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0001828,gingiva,Gingival mucosa,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,139,32285,counts,pixel,3.897070294163548,platform_constant,True,H&E,3.897070294163548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627243,,GSM8322401,,,train,hesrt,samples/GSE269576/GSM8322401,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8322401,GSE269576,GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0001828,gingiva,Gingival mucosa,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,139,32285,counts,pixel,3.8970702941635476,platform_constant,True,H&E,3.8970702941635476,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627243,,GSM8322401,,,train,hesrt,samples/GSE269576/GSM8322401,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8322402,GSE269576,GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0001828,gingiva,Gingival mucosa,primary tissue,,,normal,luna,,SPF,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,144,32285,counts,pixel,3.9927598365655967,platform_constant,True,H&E,3.9927598365655967,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627243,,GSM8322402,,,train,hesrt,samples/GSE269576/GSM8322402,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8323030,GSE269617,GSE269617,The Maternal Gut-Immune Axis Programs the Neuroimmune Landscape of the Developing Brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Whole embryonic brain,primary tissue,,,normal,luna,,Control (PBS treated),embryonic,age rule: embryonic day,embryonic,Embryonic day 18,male,male,,,fresh frozen,Fresh frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,392559,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,UNRESOLVED,,zero_count_observations;near_duplicate_observations,VERIFIED,,,,,,GSM8323030,,,train,sda-all,samples/GSE269617/GSM8323030,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.81}",, GSM8323031,GSE269617,GSE269617,The Maternal Gut-Immune Axis Programs the Neuroimmune Landscape of the Developing Brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Whole embryonic brain,primary tissue,,,normal,luna,,Control (PBS treated),embryonic,age rule: embryonic day,embryonic,Embryonic day 18,male,male,,,fresh frozen,Fresh frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,377651,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,UNRESOLVED,,zero_count_observations;near_duplicate_observations,VERIFIED,,,,,,GSM8323031,,,train,sda-all,samples/GSE269617/GSM8323031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.98, ""life_stage"": 0.63}",, @@ -4424,12 +4424,12 @@ GSM8324905,GSE269695,GSE269695,Patient-derived lymphomoids preserve the tumor ar GSM8324906,GSE269695,GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,UBERON:0001744,lymphoid tissue,Primary lymphoid tissue,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,DLBCL,Original biopsy,not stated,luna,not stated,,unknown,,GSE269695:patient 08,patient 08,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,349,17943,counts,pixel,3.948260899453538,platform_constant,True,H&E,3.948260899453538,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39653701,,GSM8324906,,,val,hesrt,samples/GSE269695/GSM8324906,sda-tissue-disease-2.3,"{""organ"": 0.5700000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.85, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8324907,GSE269695,GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001744,lymphoid tissue,Lymphoid tissue explants,organoid,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,DLBCL,Control,not stated,luna,not stated,,unknown,,GSE269695:patient 08,patient 08,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,378,17943,counts,pixel,4.038830716445008,platform_constant,True,H&E,4.038830716445008,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39653701,,GSM8324907,,,val,hesrt,samples/GSE269695/GSM8324907,sda-tissue-disease-2.3,"{""organ"": 0.45, ""sample_kind"": 0.49, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 0.98}",organ;sample_kind,low_confidence_annotation GSM8324908,GSE269695,GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,UBERON:0001744,lymphoid tissue,Lymphoid tissue explants,organoid,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,DLBCL,Ibrutinib,not stated,luna,not stated,,unknown,,GSE269695:patient 08,patient 08,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,135,17943,counts,pixel,4.024990096144494,platform_constant,True,H&E,4.024990096144494,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39653701,,GSM8324908,,,val,hesrt,samples/GSE269695/GSM8324908,sda-tissue-disease-2.3,"{""organ"": 0.4, ""sample_kind"": 0.74, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM8324909,GSE269695,GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,UBERON:0001744,lymphoid tissue,Lymphoid tissue explants,organoid,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,DLBCL,Idelalisib,not stated,luna,not stated,,unknown,,GSE269695:patient 08,patient 08,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,191,17943,counts,pixel,3.976521930560199,platform_constant,True,H&E,3.976521930560199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39653701,,GSM8324909,,,val,hesrt,samples/GSE269695/GSM8324909,sda-tissue-disease-2.3,"{""organ"": 0.4, ""sample_kind"": 0.6000000000000001, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 0.99}",organ,low_confidence_annotation -GSM8325615,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,111858,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922608605922,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325615,,,val,sda-all,samples/GSE269719/GSM8325615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8325616,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,84419,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999808553251649,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325616,,,val,sda-all,samples/GSE269719/GSM8325616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8324909,GSE269695,GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,UBERON:0001744,lymphoid tissue,Lymphoid tissue explants,organoid,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,DLBCL,Idelalisib,not stated,luna,not stated,,unknown,,GSE269695:patient 08,patient 08,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,191,17943,counts,pixel,3.9765219305601986,platform_constant,True,H&E,3.9765219305601986,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39653701,,GSM8324909,,,val,hesrt,samples/GSE269695/GSM8324909,sda-tissue-disease-2.3,"{""organ"": 0.4, ""sample_kind"": 0.6000000000000001, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 0.99}",organ,low_confidence_annotation +GSM8325615,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,111858,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999226086059223,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325615,,,val,sda-all,samples/GSE269719/GSM8325615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8325616,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,84419,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998085532516495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325616,,,val,sda-all,samples/GSE269719/GSM8325616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8325617,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,99904,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999837892006602,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325617,,,val,sda-all,samples/GSE269719/GSM8325617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8325618,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,114493,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000250501002004,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325618,,,val,sda-all,samples/GSE269719/GSM8325618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8325619,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,108869,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845233182005,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325619,,,val,sda-all,samples/GSE269719/GSM8325619,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8325619,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,108869,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998452331820054,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325619,,,val,sda-all,samples/GSE269719/GSM8325619,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8325620,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,112097,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000064486174165,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325620,,,val,sda-all,samples/GSE269719/GSM8325620,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8325621,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,101456,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961268332989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325621,,,val,sda-all,samples/GSE269719/GSM8325621,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.59, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8325622,GSE269719,GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_300g,xenium-1.4.0.7,cell,96671,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000265330188679,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40813851,,GSM8325622,,,val,sda-all,samples/GSE269719/GSM8325622,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -4467,7 +4467,7 @@ GSM8330071,GSE269906,GSE269906,Stereo-seq on human prefrontal cortex from six AD GSM8341551,GSE270389,GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,uninjected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3047,31053,counts,pixel,4.357633515253452,platform_constant,True,H&E,4.357633515253452,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592224,,GSM8341551,,,train,hesrt,samples/GSE270389/GSM8341551,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8341552,GSE270389,GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,uninjected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3040,31053,counts,pixel,4.358015139616476,platform_constant,True,H&E,4.358015139616476,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592224,,GSM8341552,,,train,hesrt,samples/GSE270389/GSM8341552,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8341553,GSE270389,GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,injected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2610,31053,counts,pixel,4.358015139616476,platform_constant,True,H&E,4.358015139616476,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592224,,GSM8341553,,,train,hesrt,samples/GSE270389/GSM8341553,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8341554,GSE270389,GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,injected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2581,31053,counts,pixel,4.794274863359592,platform_constant,True,H&E,4.794274863359592,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592224,,GSM8341554,,,train,hesrt,samples/GSE270389/GSM8341554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8341554,GSE270389,GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,Alzheimer's disease,injected,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2581,31053,counts,pixel,4.7942748633595915,platform_constant,True,H&E,4.7942748633595915,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592224,,GSM8341554,,,train,hesrt,samples/GSE270389/GSM8341554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8349861,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 01,Donor 01,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1453,36601,counts,pixel,4.5079234171845375,platform_constant,True,H&E,4.5079234171845375,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349861,,,train,hesrt,samples/GSE270678/GSM8349861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8349862,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 01,Donor 01,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1390,36601,counts,pixel,4.526502847127605,platform_constant,True,H&E,4.526502847127605,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349862,,,train,hesrt,samples/GSE270678/GSM8349862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8349863,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 02,Donor 02,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1618,36601,counts,pixel,4.461166078631851,platform_constant,True,H&E,4.461166078631851,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349863,,,train,hesrt,samples/GSE270678/GSM8349863,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -4487,8 +4487,8 @@ GSM8349876,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer char GSM8349877,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1359,36601,counts,pixel,4.815934116742177,platform_constant,True,H&E,4.815934116742177,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349877,,,train,hesrt,samples/GSE270678/GSM8349877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8349878,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1520,36601,counts,pixel,4.789617536869264,platform_constant,True,H&E,4.789617536869264,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349878,,,train,hesrt,samples/GSE270678/GSM8349878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM8349879,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 18,Donor 18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3166,36601,counts,pixel,4.4450895109334025,platform_constant,True,H&E,4.4450895109334025,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349879,,,train,hesrt,samples/GSE270678/GSM8349879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8349880,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 20,Donor 20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1067,36601,counts,pixel,4.523497122374367,platform_constant,True,H&E,4.523497122374367,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349880,,,train,hesrt,samples/GSE270678/GSM8349880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8349881,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 20,Donor 20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3037,36601,counts,pixel,4.523497122374367,platform_constant,True,H&E,4.523497122374367,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349881,,,train,hesrt,samples/GSE270678/GSM8349881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8349880,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 20,Donor 20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1067,36601,counts,pixel,4.5234971223743665,platform_constant,True,H&E,4.5234971223743665,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349880,,,train,hesrt,samples/GSE270678/GSM8349880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8349881,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 20,Donor 20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3037,36601,counts,pixel,4.5234971223743665,platform_constant,True,H&E,4.5234971223743665,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349881,,,train,hesrt,samples/GSE270678/GSM8349881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8349882,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1949,36601,counts,pixel,4.513008999491088,platform_constant,True,H&E,4.513008999491088,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349882,,,train,hesrt,samples/GSE270678/GSM8349882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8349883,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,794,36601,counts,pixel,4.513053178625199,platform_constant,True,H&E,4.513053178625199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349883,,,train,hesrt,samples/GSE270678/GSM8349883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8349884,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 22,Donor 22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1593,36601,counts,pixel,4.30666676709813,platform_constant,True,H&E,4.30666676709813,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349884,,,train,hesrt,samples/GSE270678/GSM8349884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -4499,7 +4499,7 @@ GSM8349888,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer char GSM8349889,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 26,Donor 26,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2834,36601,counts,pixel,4.698068051856702,platform_constant,True,H&E,4.698068051856702,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349889,,,train,hesrt,samples/GSE270678/GSM8349889,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8349890,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 26,Donor 26,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2282,36601,counts,pixel,4.770591243121117,platform_constant,True,H&E,4.770591243121117,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349890,,,train,hesrt,samples/GSE270678/GSM8349890,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8349891,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 27,Donor 27,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1369,36601,counts,pixel,4.505000115395577,platform_constant,True,H&E,4.505000115395577,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349891,,,train,hesrt,samples/GSE270678/GSM8349891,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8349892,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 27,Donor 27,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2047,36601,counts,pixel,4.342777589127532,platform_constant,True,H&E,4.342777589127532,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349892,,,train,hesrt,samples/GSE270678/GSM8349892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8349892,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 27,Donor 27,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2047,36601,counts,pixel,4.3427775891275315,platform_constant,True,H&E,4.3427775891275315,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349892,,,train,hesrt,samples/GSE270678/GSM8349892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8349893,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 28,Donor 28,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2044,36601,counts,pixel,4.271110808716454,platform_constant,True,H&E,4.271110808716454,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349893,,,train,hesrt,samples/GSE270678/GSM8349893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8349894,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 01,Donor 01,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1762,36601,counts,pixel,4.559444392307212,platform_constant,True,H&E,4.559444392307212,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349894,,,train,hesrt,samples/GSE270678/GSM8349894,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.76}",, GSM8349895,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 01,Donor 01,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1666,36601,counts,pixel,4.414999926931739,platform_constant,True,H&E,4.414999926931739,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349895,,,train,hesrt,samples/GSE270678/GSM8349895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, @@ -4514,23 +4514,23 @@ GSM8349903,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer char GSM8349904,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 11,Donor 11,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1342,36601,counts,pixel,4.721666718132831,platform_constant,True,H&E,4.721666718132831,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349904,,,train,hesrt,samples/GSE270678/GSM8349904,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 0.84}",, GSM8349905,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 15,Donor 15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2675,36601,counts,pixel,5.091666545739547,platform_constant,True,H&E,5.091666545739547,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349905,,,train,hesrt,samples/GSE270678/GSM8349905,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8349906,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 15,Donor 15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1845,36601,counts,pixel,5.091666545739547,platform_constant,True,H&E,5.091666545739547,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349906,,,train,hesrt,samples/GSE270678/GSM8349906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.97}",, -GSM8349907,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,613,36601,counts,pixel,4.811666813879628,platform_constant,True,H&E,4.811666813879628,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349907,,,train,hesrt,samples/GSE270678/GSM8349907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8349907,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,613,36601,counts,pixel,4.8116668138796275,platform_constant,True,H&E,4.8116668138796275,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349907,,,train,hesrt,samples/GSE270678/GSM8349907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8349908,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,650,36601,counts,pixel,4.77555548258507,platform_constant,True,H&E,4.77555548258507,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349908,,,train,hesrt,samples/GSE270678/GSM8349908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8349909,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2182,36601,counts,pixel,4.811666813879628,platform_constant,True,H&E,4.811666813879628,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349909,,,train,hesrt,samples/GSE270678/GSM8349909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.98}",, +GSM8349909,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2182,36601,counts,pixel,4.8116668138796275,platform_constant,True,H&E,4.8116668138796275,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349909,,,train,hesrt,samples/GSE270678/GSM8349909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.98}",, GSM8349910,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 16,Donor 16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1962,36601,counts,pixel,4.77555548258507,platform_constant,True,H&E,4.77555548258507,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349910,,,train,hesrt,samples/GSE270678/GSM8349910,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM8349911,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 18,Donor 18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3072,36601,counts,pixel,4.721666718132844,platform_constant,True,H&E,4.721666718132844,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349911,,,train,hesrt,samples/GSE270678/GSM8349911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8349912,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 18,Donor 18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2140,36601,counts,pixel,4.672405056236847,platform_constant,True,H&E,4.672405056236847,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349912,,,train,hesrt,samples/GSE270678/GSM8349912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM8349913,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 20,Donor 20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,984,36601,counts,pixel,5.537777904039106,platform_constant,True,H&E,5.537777904039106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349913,,,train,hesrt,samples/GSE270678/GSM8349913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8349914,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 20,Donor 20,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2883,36601,counts,pixel,5.537777904039106,platform_constant,True,H&E,5.537777904039106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349914,,,train,hesrt,samples/GSE270678/GSM8349914,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",, -GSM8349915,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1655,36601,counts,pixel,4.798333435153968,platform_constant,True,H&E,4.798333435153968,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349915,,,train,hesrt,samples/GSE270678/GSM8349915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.8200000000000001}",, +GSM8349915,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1655,36601,counts,pixel,4.7983334351539675,platform_constant,True,H&E,4.7983334351539675,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349915,,,train,hesrt,samples/GSE270678/GSM8349915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.8200000000000001}",, GSM8349916,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1924,36601,counts,pixel,4.711111243022193,platform_constant,True,H&E,4.711111243022193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349916,,,train,hesrt,samples/GSE270678/GSM8349916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.8200000000000001}",, GSM8349917,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1291,36601,counts,pixel,4.798333435153994,platform_constant,True,H&E,4.798333435153994,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349917,,,train,hesrt,samples/GSE270678/GSM8349917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8349918,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 21,Donor 21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1395,36601,counts,pixel,4.711111243022193,platform_constant,True,H&E,4.711111243022193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349918,,,train,hesrt,samples/GSE270678/GSM8349918,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8349919,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 22,Donor 22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1338,36601,counts,pixel,4.654636926778667,platform_constant,True,H&E,4.654636926778667,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349919,,,train,hesrt,samples/GSE270678/GSM8349919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8349920,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 23,Donor 23,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2005,36601,counts,pixel,4.617435479847994,platform_constant,True,H&E,4.617435479847994,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349920,,,train,hesrt,samples/GSE270678/GSM8349920,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.89}",, GSM8349921,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 24,Donor 24,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3960,36601,counts,pixel,4.834444496559747,platform_constant,True,H&E,4.834444496559747,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349921,,,train,hesrt,samples/GSE270678/GSM8349921,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.9400000000000001}",, -GSM8349922,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 24,Donor 24,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2759,36601,counts,pixel,4.342777589127532,platform_constant,True,H&E,4.342777589127532,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349922,,,train,hesrt,samples/GSE270678/GSM8349922,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8349923,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 26,Donor 26,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3706,36601,counts,pixel,4.874143681076919,platform_constant,True,H&E,4.874143681076919,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349923,,,train,hesrt,samples/GSE270678/GSM8349923,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8349922,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 24,Donor 24,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2759,36601,counts,pixel,4.3427775891275315,platform_constant,True,H&E,4.3427775891275315,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349922,,,train,hesrt,samples/GSE270678/GSM8349922,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8349923,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 26,Donor 26,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3706,36601,counts,pixel,4.8741436810769185,platform_constant,True,H&E,4.8741436810769185,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349923,,,train,hesrt,samples/GSE270678/GSM8349923,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8349924,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,In-between,not stated,luna,not stated,,unknown,,GSE270678:Donor 26,Donor 26,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3505,36601,counts,pixel,4.529720414242332,platform_constant,True,H&E,4.529720414242332,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349924,,,train,hesrt,samples/GSE270678/GSM8349924,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM8349925,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Edge,not stated,luna,not stated,,unknown,,GSE270678:Donor 26,Donor 26,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2812,36601,counts,pixel,4.620270435391185,platform_constant,True,H&E,4.620270435391185,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349925,,,train,hesrt,samples/GSE270678/GSM8349925,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8349926,GSE270678,GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Gastric cancer tumor,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,gastric cancer,Core,not stated,luna,not stated,,unknown,,GSE270678:Donor 27,Donor 27,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2534,36601,counts,pixel,4.746373628925057,platform_constant,True,H&E,4.746373628925057,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41593079,10.1038/s41467-026-68612-z,GSM8349926,,,train,hesrt,samples/GSE270678/GSM8349926,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4597,9 +4597,9 @@ GSM8370825,GSE271150,GSE271150,Spatial mapping reveals erythroid niches in human GSM8370826,GSE271150,GSE271150,Spatial mapping reveals erythroid niches in human during development and stress,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow clot,primary tissue,MONDO:0018881,myelodysplastic syndrome,disease,luna,,No treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,visium,,,spot,2971,36945,counts,um,1.0,verified,True,H&E-like (heuristic),4.919549640307393,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42393220,,GSM8370826,,,train,sda-all,samples/GSE271150/GSM8370826,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8940307,GSE271150,GSE271150,Spatial mapping reveals erythroid niches in human during development and stress,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow clot,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,visium,,,spot,3382,37082,counts,um,1.0,verified,True,H&E-like (heuristic),5.132637810025819,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42393220,,GSM8940307,,,train,sda-all,samples/GSE271150/GSM8940307,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9745612,GSE271150,GSE271150,Spatial mapping reveals erythroid niches in human during development and stress,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,fetal liver,primary tissue,,,normal,luna,,No treatment,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,visium,,,spot,2155,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.422394891397117,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42393220,,GSM9745612,,,train,sda-all,samples/GSE271150/GSM9745612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.77, ""life_stage"": 0.98}",, -GSM8375640,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4683,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.97794836100872,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8375640,,,test,sda-all,samples/GSE271370/GSM8375640,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8375640,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4683,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9779483610087203,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8375640,,,test,sda-all,samples/GSE271370/GSM8375640,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8375641,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3649,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.921036428580514,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8375641,,,test,sda-all,samples/GSE271370/GSM8375641,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM8375642,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4768,17943,counts,um,1.0,verified,True,other bright-field stain (see review notes),4.191300440929116,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8375642,,,test,sda-all,samples/GSE271370/GSM8375642,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8375642,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4768,17943,counts,um,1.0,verified,True,other bright-field stain (see review notes),4.1913004409291155,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8375642,,,test,sda-all,samples/GSE271370/GSM8375642,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8375643,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2204,17943,counts,um,1.0,verified,True,other bright-field stain (see review notes),4.235897075204899,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8375643,,,test,sda-all,samples/GSE271370/GSM8375643,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8387358,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4409,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.200465971071704,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387358,,,test,sda-all,samples/GSE271370/GSM8387358,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, GSM8387359,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3963,17943,counts,um,1.0,verified,True,other bright-field stain (heuristic),4.291432367138355,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387359,,,test,sda-all,samples/GSE271370/GSM8387359,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4610,15 +4610,15 @@ GSM8387363,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellu GSM8387364,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3849,17943,counts,um,1.0,verified,True,other bright-field stain (see review notes),4.268687229154004,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387364,,,test,sda-all,samples/GSE271370/GSM8387364,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8387365,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4212,17943,counts,um,1.0,verified,True,other bright-field stain (see review notes),4.277671357939148,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387365,,,test,sda-all,samples/GSE271370/GSM8387365,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8387366,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Proliferative DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4498,17943,counts,um,1.0,verified,True,other bright-field stain (see review notes),4.151952103388087,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387366,,,test,sda-all,samples/GSE271370/GSM8387366,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8387367,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3717,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.897165327339757,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387367,,,test,sda-all,samples/GSE271370/GSM8387367,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8387367,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3717,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.8971653273397564,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387367,,,test,sda-all,samples/GSE271370/GSM8387367,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8387368,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3643,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9518118693154496,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387368,,,test,sda-all,samples/GSE271370/GSM8387368,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.97}",, -GSM8387369,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3264,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.92735352518068,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387369,,,test,sda-all,samples/GSE271370/GSM8387369,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, +GSM8387369,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3264,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.9273535251806795,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387369,,,test,sda-all,samples/GSE271370/GSM8387369,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM8387370,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4620,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.094136098593613,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387370,,,test,sda-all,samples/GSE271370/GSM8387370,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8387371,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4619,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.207434820821884,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387371,,,test,sda-all,samples/GSE271370/GSM8387371,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM8387372,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4602,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.235773512219491,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387372,,,test,sda-all,samples/GSE271370/GSM8387372,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8387373,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005275;MONDO:0100096,lung disorder;COVID-19,disease,luna,Acute DAD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4561,17943,counts,um,1.0,verified,True,other bright-field stain (heuristic),4.226008892608912,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,reviewer could not judge any sample of GSE271370,,,GSM8387373,,,test,sda-all,samples/GSE271370/GSM8387373,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM8387374,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4542,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.913108283085134,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387374,,,test,sda-all,samples/GSE271370/GSM8387374,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8387375,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3517,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.8981134943626174,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387375,,,test,sda-all,samples/GSE271370/GSM8387375,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8387375,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3517,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),3.8981134943626183,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387375,,,test,sda-all,samples/GSE271370/GSM8387375,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8387376,GSE271370,GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Control,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4086,17943,counts,um,1.0,verified,True,grayscale bright-field (heuristic),4.085333504092165,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8387376,,,test,sda-all,samples/GSE271370/GSM8387376,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8376639,GSE271422,GSE271422,spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain melanoma metastasis,metastasis,MONDO:0005105,melanoma,disease,luna,melanoma metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1732,36601,counts,pixel,4.996153721050163,platform_constant,True,H&E,4.996153721050163,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39636739,,GSM8376639,,,train,hesrt,samples/GSE271422/GSM8376639,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8376640,GSE271422,GSE271422,spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain melanoma metastasis,metastasis,MONDO:0005105,melanoma,disease,luna,melanoma metastasis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1302,36601,counts,pixel,4.057692301605761,platform_constant,True,H&E,4.057692301605761,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39636739,,GSM8376640,,,train,hesrt,samples/GSE271422/GSM8376640,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -4628,7 +4628,7 @@ GSM8382627,GSE271693,GSE271693,High resolution mapping of erythroid niches in mi GSM8382628,GSE271693,GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Adult WT mice spleen,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,108338,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000308641975308,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42393220,,GSM8382628,,,train,sda-all,samples/GSE271693/GSM8382628,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM8382629,GSE271693,GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,PHZ treated mice spleen,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,94582,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077407369181,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42393220,,GSM8382629,,,train,sda-all,samples/GSE271693/GSM8382629,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8945653,GSE271693,GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,WT mice embryo E13.5 days fetal liver,primary tissue,,,normal,luna,,,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5285,13617,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999488543371522,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42393220,,GSM8945653,,,train,sda-all,samples/GSE271693/GSM8945653,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.48}",life_stage,low_confidence_annotation -GSM8945654,GSE271693,GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone marrow,luna,UBERON:0002371,bone marrow,89 weeks old WT mice bone marrow,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,143810,13617,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999981203007518,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42393220,,GSM8945654,,,train,sda-all,samples/GSE271693/GSM8945654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.71}",, +GSM8945654,GSE271693,GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone marrow,luna,UBERON:0002371,bone marrow,89 weeks old WT mice bone marrow,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,143810,13617,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999812030075186,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42393220,,GSM8945654,,,train,sda-all,samples/GSE271693/GSM8945654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.71}",, GSM8383560,GSE271725,GSE271725,A soil-grown wheat root atlas with validated cross-species cluster annotations allows to delineate conserved tissue specific marker genes [Spatial Transcriptomics],Triticum aestivum,4565,bread wheat,Triticum aestivum,4565,,False,False,GEO organism field,Triticum aestivum,,plant,luna,,,Root,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,159278,77502,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,39893633,,GSM8383560,,,val,sda-all,samples/GSE271725/GSM8383560,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8383561,GSE271725,GSE271725,A soil-grown wheat root atlas with validated cross-species cluster annotations allows to delineate conserved tissue specific marker genes [Spatial Transcriptomics],Triticum aestivum,4565,bread wheat,Triticum aestivum,4565,,False,False,GEO organism field,Triticum aestivum,,plant,luna,,,Root,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,167120,96646,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,39893633,,GSM8383561,,,val,sda-all,samples/GSE271725/GSM8383561,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8385442,GSE271795,GSE271795,Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,esophagus,luna,UBERON:0001043,esophagus,mouse embryo,primary tissue,,,normal,luna,,not treated,embryonic,age rule: embryonic day,embryonic,E13.5,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3228,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.680371432066744,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39164270,,GSM8385442,,,train,sda-all,samples/GSE271795/GSM8385442,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -4645,17 +4645,17 @@ GSM8396159,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microen GSM8396160,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1398,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.248756506898975,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41339360,,GSM8396160,,,train,sda-all,samples/GSE272236/GSM8396160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8396161,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2723,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.232015608494873,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396161,,,train,sda-all,samples/GSE272236/GSM8396161,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8396162,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1921,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.224432986778781,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396162,,,train,sda-all,samples/GSE272236/GSM8396162,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8396163,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2301,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.231771598122712,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396163,,,train,sda-all,samples/GSE272236/GSM8396163,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8396163,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2301,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.2317715981227115,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396163,,,train,sda-all,samples/GSE272236/GSM8396163,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8396164,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2383,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.226974064634488,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396164,,,train,sda-all,samples/GSE272236/GSM8396164,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8396165,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2725,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.236681021294811,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396165,,,train,sda-all,samples/GSE272236/GSM8396165,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM8396166,GSE272236,GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,no treatment applied,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2887,21834,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.234191405533975,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41339360,,GSM8396166,,,train,sda-all,samples/GSE272236/GSM8396166,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8398121,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,luna,adult,7,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,57703,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999905172413791,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398121,,,test,sda-all,samples/GSE272303/GSM8398121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8398121,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,luna,adult,7,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,57703,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999051724137916,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398121,,,test,sda-all,samples/GSE272303/GSM8398121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8398122,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,luna,adult,7,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,60632,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999939675973803,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398122,,,test,sda-all,samples/GSE272303/GSM8398122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8398123,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,luna,adult,7,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,61273,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999962422967082,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398123,,,test,sda-all,samples/GSE272303/GSM8398123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8398123,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,luna,adult,7,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,61273,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999624229670825,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398123,,,test,sda-all,samples/GSE272303/GSM8398123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8398124,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,,,normal,luna,,,adult,luna,adult,7,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,59214,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000017247326665,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398124,,,test,sda-all,samples/GSE272303/GSM8398124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8398125,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,MONDO:0000510,synucleinopathy,disease,luna,,,adult,luna,adult,7,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,51863,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999803881090007,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398125,,,test,sda-all,samples/GSE272303/GSM8398125,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8398126,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,MONDO:0000510,synucleinopathy,disease,luna,,,adult,luna,adult,7,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,55349,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000187941662908,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398126,,,test,sda-all,samples/GSE272303/GSM8398126,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8398127,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,MONDO:0000510,synucleinopathy,disease,luna,,,adult,luna,adult,7,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,52795,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999887328175467,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398127,,,test,sda-all,samples/GSE272303/GSM8398127,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8398127,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,MONDO:0000510,synucleinopathy,disease,luna,,,adult,luna,adult,7,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,52795,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998873281754674,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398127,,,test,sda-all,samples/GSE272303/GSM8398127,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8398128,GSE272303,GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Coronal brain section,primary tissue,MONDO:0000510,synucleinopathy,disease,luna,,,adult,luna,adult,7,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,56900,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000187941662908,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41545426,,GSM8398128,,,test,sda-all,samples/GSE272303/GSM8398128,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8398717,GSE272334,GSE272334,The inflammatory micro-environment induced by targeted CNS radiotherapy is underpined by disruption of DNA methylation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,Radiotherapy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1903,17943,counts,pixel,4.400369126900356,platform_constant,True,H&E,4.400369126900356,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40298030,,GSM8398717,,,train,hesrt,samples/GSE272334/GSM8398717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8398718,GSE272334,GSE272334,The inflammatory micro-environment induced by targeted CNS radiotherapy is underpined by disruption of DNA methylation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,Radiotherapy,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2215,17943,counts,pixel,4.400339168674096,platform_constant,True,H&E,4.400339168674096,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40298030,,GSM8398718,,,train,hesrt,samples/GSE272334/GSM8398718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -4703,7 +4703,7 @@ GSM8427439,GSE273378,GSE273378,Vascular invasion-associated gene expression is d GSM8427440,GSE273378,GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,NST,adult,age rule: bare number read as years,adult,63,female,female,GSE273378:13034,13034,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3604,17943,counts,pixel,4.279743380674974,platform_constant,True,H&E,4.279743380674974,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41876493,,GSM8427440,,,train,hesrt,samples/GSE273378/GSM8427440,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8427441,GSE273378,GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,NST,aged,age rule: bare number read as years,aged,65,female,female,GSE273378:915,915,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2912,17943,counts,pixel,4.122927155623384,platform_constant,True,H&E,4.122927155623384,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41876493,,GSM8427441,,,train,hesrt,samples/GSE273378/GSM8427441,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8427442,GSE273378,GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,NST,aged,age rule: bare number read as years,aged,72,female,female,GSE273378:22809,22809,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1915,17943,counts,pixel,4.198178671948288,platform_constant,True,H&E,4.198178671948288,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41876493,,GSM8427442,,,train,hesrt,samples/GSE273378/GSM8427442,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8427443,GSE273378,GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,NST,aged,age rule: bare number read as years,aged,75,female,female,GSE273378:25115,25115,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1744,17943,counts,pixel,4.17317912697006,platform_constant,True,H&E,4.17317912697006,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41876493,,GSM8427443,,,train,hesrt,samples/GSE273378/GSM8427443,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8427443,GSE273378,GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,NST,aged,age rule: bare number read as years,aged,75,female,female,GSE273378:25115,25115,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1744,17943,counts,pixel,4.1731791269700595,platform_constant,True,H&E,4.1731791269700595,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41876493,,GSM8427443,,,train,hesrt,samples/GSE273378/GSM8427443,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8428199,GSE273432,GSE273432,The roles of glioma-associated macrophages/microglia in human GBM,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,5.355519526324199,platform_constant,True,H&E,5.355519526324199,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39921277,,GSM8428199,,,train,hesrt,samples/GSE273432/GSM8428199,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8428200,GSE273432,GSE273432,The roles of glioma-associated macrophages/microglia in human GBM,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3638,18085,counts,pixel,4.7759914035569775,platform_constant,True,H&E,4.7759914035569775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39921277,,GSM8428200,,,train,hesrt,samples/GSE273432/GSM8428200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8428201,GSE273432,GSE273432,The roles of glioma-associated macrophages/microglia in human GBM,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4437,18085,counts,pixel,6.263487657307462,platform_constant,True,H&E,6.263487657307462,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39921277,,GSM8428201,,,train,hesrt,samples/GSE273432/GSM8428201,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -4756,7 +4756,7 @@ GSM8442777,GSE274059,GSE274059,Hif2α–Lox mediated collagen remodelling is cru GSM8442778,GSE274059,GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Lox-flox/flox,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,662,32285,counts,pixel,4.299999935930002,platform_constant,True,H&E,4.299999935930002,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41803091,,GSM8442778,,,train,hesrt,samples/GSE274059/GSM8442778,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 0.79}",disease_status,low_confidence_annotation GSM8442779,GSE274059,GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Lox-flox/flox,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,436,32285,counts,pixel,4.2996182326834935,platform_constant,True,H&E,4.2996182326834935,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41803091,,GSM8442779,,,train,hesrt,samples/GSE274059/GSM8442779,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 0.85}",, GSM8442780,GSE274059,GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Lox-flox/flox; Pgr-Cre/+,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,454,32285,counts,pixel,4.301526457314896,platform_constant,True,H&E,4.301526457314896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41803091,,GSM8442780,,,train,hesrt,samples/GSE274059/GSM8442780,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.64}",, -GSM8442781,GSE274059,GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Lox-flox/flox; Pgr-Cre/+,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,408,32285,counts,pixel,4.300763545775808,platform_constant,True,H&E,4.300763545775808,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41803091,,GSM8442781,,,train,hesrt,samples/GSE274059/GSM8442781,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.51}",life_stage,low_confidence_annotation +GSM8442781,GSE274059,GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Lox-flox/flox; Pgr-Cre/+,adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,408,32285,counts,pixel,4.3007635457758076,platform_constant,True,H&E,4.3007635457758076,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41803091,,GSM8442781,,,train,hesrt,samples/GSE274059/GSM8442781,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.51}",life_stage,low_confidence_annotation GSM8443449,GSE274103,GSE274103,Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,78.9,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4987,17943,counts,pixel,4.650537450014783,platform_constant,True,H&E,4.650537450014783,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40154487,,GSM8443449,,,train,hesrt,samples/GSE274103/GSM8443449,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8443450,GSE274103,GSE274103,Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,80.9,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4380,17943,counts,pixel,4.477304139549158,platform_constant,True,H&E,4.477304139549158,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40154487,,GSM8443450,,,train,hesrt,samples/GSE274103/GSM8443450,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8443451,GSE274103,GSE274103,Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,78.2,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4134,17943,counts,pixel,4.464487715384358,platform_constant,True,H&E,4.464487715384358,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40154487,,GSM8443451,,,train,hesrt,samples/GSE274103/GSM8443451,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -4774,75 +4774,75 @@ GSM8447277,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping GSM8447278,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,APA,tumour tissue,MONDO:0001422;MONDO:0004972,primary aldosteronism;adenoma,disease,luna,primary aldosteronism,KCNJ5_MUT,not stated,luna,not stated,,unknown,,GSE274314:Patient5,Patient5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1005,36601,counts,pixel,4.339678235324803,platform_constant,True,H&E,4.339678235324803,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37125608;39826326,,GSM8447278,,,train,hesrt,samples/GSE274314/GSM8447278,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM8447279,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adjacent,primary tissue,MONDO:0003009,hyperaldosteronism,disease,mondo_predicate,,adjacent,not stated,luna,not stated,,unknown,,GSE274314:Patient6,Patient6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1906,36601,counts,pixel,4.218614830370244,platform_constant,True,H&E,4.218614830370244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37125608;39826326,,GSM8447279,,,train,hesrt,samples/GSE274314/GSM8447279,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8447280,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,APA,tumour tissue,MONDO:0001422;MONDO:0004972,primary aldosteronism;adenoma,disease,luna,primary aldosteronism,KCNJ5_WT,not stated,luna,not stated,,unknown,,GSE274314:Patient6,Patient6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1608,36601,counts,pixel,4.359023129524562,platform_constant,True,H&E,4.359023129524562,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37125608;39826326,,GSM8447280,,,train,hesrt,samples/GSE274314/GSM8447280,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8447281,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adjacent,primary tissue,MONDO:0001422,primary aldosteronism,disease,mondo_predicate,,adjacent,not stated,luna,not stated,,unknown,,GSE274314:Patient7,Patient7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1945,36601,counts,pixel,4.249402502626023,platform_constant,True,H&E,4.249402502626023,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37125608;39826326,,GSM8447281,,,train,hesrt,samples/GSE274314/GSM8447281,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.27, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8447281,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,Adjacent,primary tissue,MONDO:0001422,primary aldosteronism,disease,mondo_predicate,,adjacent,not stated,luna,not stated,,unknown,,GSE274314:Patient7,Patient7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1945,36601,counts,pixel,4.2494025026260225,platform_constant,True,H&E,4.2494025026260225,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37125608;39826326,,GSM8447281,,,train,hesrt,samples/GSE274314/GSM8447281,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.27, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8447282,GSE274314,GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,APA,tumour tissue,MONDO:0001422;MONDO:0004972,primary aldosteronism;adenoma,disease,luna,primary aldosteronism,KCNJ5_MUT,not stated,luna,not stated,,unknown,,GSE274314:Patient7,Patient7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1380,36601,counts,pixel,4.237732365145434,platform_constant,True,H&E,4.237732365145434,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37125608;39826326,,GSM8447282,,,train,hesrt,samples/GSE274314/GSM8447282,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8449354,GSE274447,GSE274447,In vivo Spatial Perturb-Seq in the mouse brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001869,cerebral hemisphere,brain coronal hemisphere,primary tissue,,,perturbation,luna,,Injected,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,STOMICS,,,cell,39862,26280,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41723140,,GSM8449354,,,train,sda-all,samples/GSE274447/GSM8449354,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.64, ""life_stage"": 1.0}",, GSM8450059,GSE274489,GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018824,pyoderma gangrenosum,disease,luna,pyoderma gangrenosum,Untreated,not stated,luna,not stated,,unknown,,GSE274489:DP22,DP22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1616,18085,counts,pixel,2.909064555617312,platform_constant,True,H&E,2.909064555617312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39393505,,GSM8450059,,,train,hesrt,samples/GSE274489/GSM8450059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.91, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8450060,GSE274489,GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018824,pyoderma gangrenosum,disease,luna,pyoderma gangrenosum,Untreated,not stated,luna,not stated,,unknown,,GSE274489:DP22,DP22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1304,18085,counts,pixel,5.167862986124308,platform_constant,True,H&E,5.167862986124308,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39393505,,GSM8450060,,,train,hesrt,samples/GSE274489/GSM8450060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.55, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8450061,GSE274489,GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018824,pyoderma gangrenosum,disease,luna,pyoderma gangrenosum,ustekinumab,not stated,luna,not stated,,unknown,,GSE274489:DP23,DP23,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,919,18085,counts,pixel,2.9049645985007717,platform_constant,True,H&E,2.9049645985007717,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39393505,,GSM8450061,,,train,hesrt,samples/GSE274489/GSM8450061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.91, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8450061,GSE274489,GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018824,pyoderma gangrenosum,disease,luna,pyoderma gangrenosum,ustekinumab,not stated,luna,not stated,,unknown,,GSE274489:DP23,DP23,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,919,18085,counts,pixel,2.9049645985007713,platform_constant,True,H&E,2.9049645985007713,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39393505,,GSM8450061,,,train,hesrt,samples/GSE274489/GSM8450061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.91, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8450062,GSE274489,GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018824,pyoderma gangrenosum,disease,luna,pyoderma gangrenosum,ustekinumab,not stated,luna,not stated,,unknown,,GSE274489:DP23,DP23,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1838,18085,counts,pixel,3.3846617139460684,platform_constant,True,H&E,3.3846617139460684,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39393505,,GSM8450062,,,train,hesrt,samples/GSE274489/GSM8450062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.49, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8450394,GSE274497,GSE274497,Spatial transcriptomics of murine eyelid,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0001711,eyelid,eyelid,primary tissue,,,normal,luna,,wild type,adult,age rule: age with unit,adult,8 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,375,32285,counts,pixel,5.83384571514098,platform_constant,True,H&E,5.83384571514098,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39955307,,GSM8450394,,,train,hesrt,samples/GSE274497/GSM8450394,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8450578,GSE274509,GSE274509,Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,ovarian cancer,Untreated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2823,19465,counts,pixel,3.986277110945238,platform_constant,True,H&E,3.986277110945238,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39372930;41679728,,GSM8450578,,,train,hesrt,samples/GSE274509/GSM8450578,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 0.56, ""disease_status"": 1.0, ""uberon"": 0.25, ""life_stage"": 1.0}",organ;sample_kind;uberon,low_confidence_annotation GSM8450579,GSE274509,GSE274509,Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,ovarian cancer,metastasis,MONDO:0008170,ovarian cancer,disease,luna,ovarian cancer,ACT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2312,19465,counts,pixel,4.004158773964351,platform_constant,True,H&E,4.004158773964351,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39372930;41679728,,GSM8450579,,,train,hesrt,samples/GSE274509/GSM8450579,sda-tissue-disease-2.3,"{""organ"": 0.66, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.28, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8450580,GSE274509,GSE274509,Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,ovarian cancer,OV-FC + ACT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1676,19465,counts,pixel,3.940793294660439,platform_constant,True,H&E,3.940793294660439,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39372930;41679728,,GSM8450580,,,train,hesrt,samples/GSE274509/GSM8450580,sda-tissue-disease-2.3,"{""organ"": 0.44, ""sample_kind"": 0.51, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",organ;sample_kind;uberon,low_confidence_annotation GSM8450581,GSE274509,GSE274509,Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,ovarian cancer,OV-CXCR4 + ACT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2329,19465,counts,pixel,3.974449856511901,platform_constant,True,H&E,3.974449856511901,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39372930;41679728,,GSM8450581,,,train,hesrt,samples/GSE274509/GSM8450581,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 0.39, ""disease_status"": 1.0, ""uberon"": 0.53, ""life_stage"": 1.0}",sample_kind;uberon,low_confidence_annotation -GSM8452847,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,83,female,female,GSE274557:Pt-1,Pt-1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2753,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999927144634293,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452847,,,train,hesrt,samples/GSE274557/GSM8452847,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452848,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,83,female,female,GSE274557:Pt-1,Pt-1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2956,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000058427649042,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452848,,,train,hesrt,samples/GSE274557/GSM8452848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8452849,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,83,female,female,GSE274557:Pt-1,Pt-1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3047,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000149192692016,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452849,,,train,hesrt,samples/GSE274557/GSM8452849,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452850,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-2,Pt-2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2674,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000118152387497,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452850,,,train,hesrt,samples/GSE274557/GSM8452850,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452851,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-2,Pt-2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2867,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999995348625193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452851,,,train,hesrt,samples/GSE274557/GSM8452851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8452852,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-2,Pt-2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2322,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000152423169756,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452852,,,train,hesrt,samples/GSE274557/GSM8452852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452853,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2999,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000115204718785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452853,,,train,hesrt,samples/GSE274557/GSM8452853,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452854,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2696,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000127304900693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452854,,,train,hesrt,samples/GSE274557/GSM8452854,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8452855,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2537,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999857108665287,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452855,,,train,hesrt,samples/GSE274557/GSM8452855,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8452856,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3155,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000059724147943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452856,,,train,hesrt,samples/GSE274557/GSM8452856,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452857,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2773,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000087145489853,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452857,,,train,hesrt,samples/GSE274557/GSM8452857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8452858,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2623,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999995407581715,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452858,,,train,hesrt,samples/GSE274557/GSM8452858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8452859,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3493,36601,counts,pixel,0.3633961810714298,platform_constant,True,H&E,0.4999894283204744,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452859,,,train,hesrt,samples/GSE274557/GSM8452859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452860,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,84,female,female,GSE274557:Pt-5,Pt-5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2931,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000100504532755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452860,,,train,hesrt,samples/GSE274557/GSM8452860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452861,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,84,female,female,GSE274557:Pt-5,Pt-5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2772,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999963613473203,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452861,,,train,hesrt,samples/GSE274557/GSM8452861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8452862,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,84,female,female,GSE274557:Pt-5,Pt-5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2397,36601,counts,pixel,0.3623093282773527,platform_constant,True,H&E,0.5000022098220016,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452862,,,train,hesrt,samples/GSE274557/GSM8452862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8452847,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,83,female,female,GSE274557:Pt-1,Pt-1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2753,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999927144634293,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452847,,,train,hesrt,samples/GSE274557/GSM8452847,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452848,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,83,female,female,GSE274557:Pt-1,Pt-1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2956,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000058427649042,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452848,,,train,hesrt,samples/GSE274557/GSM8452848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8452849,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,83,female,female,GSE274557:Pt-1,Pt-1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3047,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000149192692016,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452849,,,train,hesrt,samples/GSE274557/GSM8452849,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452850,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-2,Pt-2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2674,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000118152387497,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452850,,,train,hesrt,samples/GSE274557/GSM8452850,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452851,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-2,Pt-2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2867,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.49999953486251936,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452851,,,train,hesrt,samples/GSE274557/GSM8452851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8452852,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-2,Pt-2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2322,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000152423169756,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452852,,,train,hesrt,samples/GSE274557/GSM8452852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452853,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2999,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000115204718785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452853,,,train,hesrt,samples/GSE274557/GSM8452853,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452854,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2696,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000127304900693,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452854,,,train,hesrt,samples/GSE274557/GSM8452854,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8452855,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2537,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999857108665287,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452855,,,train,hesrt,samples/GSE274557/GSM8452855,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8452856,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3155,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000059724147943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452856,,,train,hesrt,samples/GSE274557/GSM8452856,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452857,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2773,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000087145489853,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452857,,,train,hesrt,samples/GSE274557/GSM8452857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8452858,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2623,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999995407581715,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452858,,,train,hesrt,samples/GSE274557/GSM8452858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8452859,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,79,female,female,GSE274557:Pt-4,Pt-4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3493,36601,counts,pixel,0.36339618107142985,platform_constant,True,H&E,0.4999894283204744,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452859,,,train,hesrt,samples/GSE274557/GSM8452859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452860,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,84,female,female,GSE274557:Pt-5,Pt-5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2931,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000100504532755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452860,,,train,hesrt,samples/GSE274557/GSM8452860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452861,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,84,female,female,GSE274557:Pt-5,Pt-5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2772,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.49999636134732034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452861,,,train,hesrt,samples/GSE274557/GSM8452861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8452862,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,84,female,female,GSE274557:Pt-5,Pt-5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2397,36601,counts,pixel,0.36230932827735274,platform_constant,True,H&E,0.5000022098220016,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452862,,,train,hesrt,samples/GSE274557/GSM8452862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM8452863,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1758,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.4999985487332786,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452863,,,train,hesrt,samples/GSE274557/GSM8452863,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452864,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2686,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999967594302893,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452864,,,train,hesrt,samples/GSE274557/GSM8452864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452865,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2260,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999912310579313,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452865,,,train,hesrt,samples/GSE274557/GSM8452865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452866,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2660,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.4999989961622919,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452866,,,train,hesrt,samples/GSE274557/GSM8452866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452867,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3954,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000038501323162,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452867,,,train,hesrt,samples/GSE274557/GSM8452867,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452868,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3435,36601,counts,pixel,0.36234500327489,platform_constant,True,H&E,0.500003313116337,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452868,,,train,hesrt,samples/GSE274557/GSM8452868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8452869,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2731,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999865879944379,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452869,,,train,hesrt,samples/GSE274557/GSM8452869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8452864,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2686,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999967594302893,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452864,,,train,hesrt,samples/GSE274557/GSM8452864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452865,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2260,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.49999123105793136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452865,,,train,hesrt,samples/GSE274557/GSM8452865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452866,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2660,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.49999899616229193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452866,,,train,hesrt,samples/GSE274557/GSM8452866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452867,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3954,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000038501323162,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452867,,,train,hesrt,samples/GSE274557/GSM8452867,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452868,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3435,36601,counts,pixel,0.36234500327489005,platform_constant,True,H&E,0.500003313116337,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452868,,,train,hesrt,samples/GSE274557/GSM8452868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8452869,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2731,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999865879944379,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452869,,,train,hesrt,samples/GSE274557/GSM8452869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM8452870,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, ADH1, cisplatin",adult,age rule: bare number read as years,adult,57,male,male,GSE274557:Pt-7,Pt-7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3226,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.500000568265801,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452870,,,train,hesrt,samples/GSE274557/GSM8452870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452871,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3952,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000100504532755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452871,,,train,hesrt,samples/GSE274557/GSM8452871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.97}",, -GSM8452872,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2531,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000050510198927,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452872,,,train,hesrt,samples/GSE274557/GSM8452872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.9500000000000001}",, -GSM8452873,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2915,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000128514410137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452873,,,train,hesrt,samples/GSE274557/GSM8452873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, +GSM8452871,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3952,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000100504532755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452871,,,train,hesrt,samples/GSE274557/GSM8452871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.97}",, +GSM8452872,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2531,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000050510198927,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452872,,,train,hesrt,samples/GSE274557/GSM8452872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.9500000000000001}",, +GSM8452873,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2915,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000128514410137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452873,,,train,hesrt,samples/GSE274557/GSM8452873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, GSM8452874,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2327,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.500000568265801,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452874,,,train,hesrt,samples/GSE274557/GSM8452874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8452875,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3177,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000149990864193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452875,,,train,hesrt,samples/GSE274557/GSM8452875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452876,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2887,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999991194097932,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452876,,,train,hesrt,samples/GSE274557/GSM8452876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8452877,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3271,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999967901893513,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452877,,,train,hesrt,samples/GSE274557/GSM8452877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8452875,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3177,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000149990864193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452875,,,train,hesrt,samples/GSE274557/GSM8452875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452876,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2887,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.49999911940979325,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452876,,,train,hesrt,samples/GSE274557/GSM8452876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8452877,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3271,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999967901893513,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452877,,,train,hesrt,samples/GSE274557/GSM8452877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8452878,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"Cisplatin, gemcitabine, ADH-1, 5-FU (Clinical trial)",adult,age rule: bare number read as years,adult,60,female,female,GSE274557:Pt-9,Pt-9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2169,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.5000145114779667,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452878,,,train,hesrt,samples/GSE274557/GSM8452878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452879,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2225,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000035966630161,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452879,,,train,hesrt,samples/GSE274557/GSM8452879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452880,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2686,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000132927400555,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452880,,,train,hesrt,samples/GSE274557/GSM8452880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8452881,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1873,36601,counts,pixel,0.3636363636363636,platform_constant,True,H&E,0.4999972622691409,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452881,,,train,hesrt,samples/GSE274557/GSM8452881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452882,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2008,36601,counts,pixel,0.3622594009787176,platform_constant,True,H&E,0.4999964636307883,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452882,,,train,hesrt,samples/GSE274557/GSM8452882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8452883,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, Oxaliplatin, leucovorin-modulated 5-FU, irinotecan,",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-11,Pt-11,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3563,36601,counts,pixel,0.3622023664750022,platform_constant,True,H&E,0.5000070934717877,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452883,,,train,hesrt,samples/GSE274557/GSM8452883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452879,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2225,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000035966630161,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452879,,,train,hesrt,samples/GSE274557/GSM8452879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452880,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2686,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000132927400555,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452880,,,train,hesrt,samples/GSE274557/GSM8452880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8452881,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1873,36601,counts,pixel,0.36363636363636365,platform_constant,True,H&E,0.4999972622691409,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452881,,,train,hesrt,samples/GSE274557/GSM8452881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452882,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2008,36601,counts,pixel,0.36225940097871767,platform_constant,True,H&E,0.4999964636307883,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452882,,,train,hesrt,samples/GSE274557/GSM8452882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8452883,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, Oxaliplatin, leucovorin-modulated 5-FU, irinotecan,",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-11,Pt-11,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3563,36601,counts,pixel,0.36220236647500226,platform_constant,True,H&E,0.5000070934717877,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452883,,,train,hesrt,samples/GSE274557/GSM8452883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8452884,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, Oxaliplatin, leucovorin-modulated 5-FU, irinotecan,",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-11,Pt-11,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2741,36601,counts,pixel,0.3636339594528438,platform_constant,True,H&E,0.4999995075326099,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452884,,,train,hesrt,samples/GSE274557/GSM8452884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.86}",, GSM8452885,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, Oxaliplatin, leucovorin-modulated 5-FU, irinotecan,",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-11,Pt-11,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2635,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.5000138767150525,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452885,,,train,hesrt,samples/GSE274557/GSM8452885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8452886,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, Oxaliplatin, leucovorin-modulated 5-FU, irinotecan,",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-11,Pt-11,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2845,36601,counts,pixel,0.3634825919587946,platform_constant,True,H&E,0.5000044411668702,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452886,,,train,hesrt,samples/GSE274557/GSM8452886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.91}",, -GSM8452887,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2892,36601,counts,pixel,0.3623093282773527,platform_constant,True,H&E,0.5000143475559576,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452887,,,train,hesrt,samples/GSE274557/GSM8452887,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452888,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2123,36601,counts,pixel,0.3623093282773527,platform_constant,True,H&E,0.4999907230539818,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452888,,,train,hesrt,samples/GSE274557/GSM8452888,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452889,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3361,36601,counts,pixel,0.3623093282773527,platform_constant,True,H&E,0.4999907230539818,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452889,,,train,hesrt,samples/GSE274557/GSM8452889,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452890,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2696,36601,counts,pixel,0.3622332568202595,platform_constant,True,H&E,0.5000146957989255,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452890,,,train,hesrt,samples/GSE274557/GSM8452890,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8452887,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2892,36601,counts,pixel,0.36230932827735274,platform_constant,True,H&E,0.5000143475559576,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452887,,,train,hesrt,samples/GSE274557/GSM8452887,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452888,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2123,36601,counts,pixel,0.36230932827735274,platform_constant,True,H&E,0.4999907230539818,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452888,,,train,hesrt,samples/GSE274557/GSM8452888,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452889,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3361,36601,counts,pixel,0.36230932827735274,platform_constant,True,H&E,0.4999907230539818,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452889,,,train,hesrt,samples/GSE274557/GSM8452889,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452890,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,gemcitabine,aged,age rule: bare number read as years,aged,78,female,female,GSE274557:Pt-12,Pt-12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2696,36601,counts,pixel,0.36223325682025953,platform_constant,True,H&E,0.5000146957989255,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452890,,,train,hesrt,samples/GSE274557/GSM8452890,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8452891,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3073,36601,counts,pixel,0.362316462433881,platform_constant,True,H&E,0.4999885772321251,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452891,,,train,hesrt,samples/GSE274557/GSM8452891,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452892,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2815,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.5000095108155265,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452892,,,train,hesrt,samples/GSE274557/GSM8452892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8452893,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2622,36601,counts,pixel,0.3623188405797101,platform_constant,True,H&E,0.4999936419356128,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452893,,,train,hesrt,samples/GSE274557/GSM8452893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452894,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2160,36601,counts,pixel,0.3622332568202595,platform_constant,True,H&E,0.5000057348416402,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452894,,,train,hesrt,samples/GSE274557/GSM8452894,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8452895,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2883,36601,counts,pixel,0.3623093282773527,platform_constant,True,H&E,0.5000031942562603,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452895,,,train,hesrt,samples/GSE274557/GSM8452895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8714177,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,444,36601,counts,pixel,0.3644299380820759,platform_constant,True,H&E,0.5000051644949799,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714177,,,train,hesrt,samples/GSE274557/GSM8714177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8452892,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver metastasis,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2815,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.5000095108155265,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452892,,,train,hesrt,samples/GSE274557/GSM8452892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8452893,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2622,36601,counts,pixel,0.36231884057971014,platform_constant,True,H&E,0.4999936419356128,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452893,,,train,hesrt,samples/GSE274557/GSM8452893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452894,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2160,36601,counts,pixel,0.36223325682025953,platform_constant,True,H&E,0.5000057348416402,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452894,,,train,hesrt,samples/GSE274557/GSM8452894,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8452895,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneal metastasis,metastasis,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2883,36601,counts,pixel,0.36230932827735274,platform_constant,True,H&E,0.5000031942562603,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8452895,,,train,hesrt,samples/GSE274557/GSM8452895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8714177,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,No treatment,aged,age rule: bare number read as years,aged,89,female,female,GSE274557:Pt-3,Pt-3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,444,36601,counts,pixel,0.36442993808207597,platform_constant,True,H&E,0.5000051644949799,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714177,,,train,hesrt,samples/GSE274557/GSM8714177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8714178,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,660,36601,counts,pixel,0.8308846776785371,platform_constant,True,H&E,0.8308846776785371,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714178,,,train,hesrt,samples/GSE274557/GSM8714178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8714179,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"gemcitabine, AVN944, erlotinib",adult,age rule: bare number read as years,adult,60,male,male,GSE274557:Pt-6,Pt-6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1829,36601,counts,pixel,0.8308846776785371,platform_constant,True,H&E,0.8308846776785371,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714179,,,train,hesrt,samples/GSE274557/GSM8714179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8714180,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1453,36601,counts,pixel,0.3726262461981637,platform_constant,True,H&E,0.4999869298271294,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714180,,,train,hesrt,samples/GSE274557/GSM8714180,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8714181,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,419,36601,counts,pixel,0.3584229390681003,platform_constant,True,H&E,0.4999909943985158,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714181,,,train,hesrt,samples/GSE274557/GSM8714181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8714182,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1701,36601,counts,pixel,0.3584229390681003,platform_constant,True,H&E,0.4999909943985158,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714182,,,train,hesrt,samples/GSE274557/GSM8714182,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8714180,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, FOLFIRI, Abraxane/Gemcitabine",aged,age rule: bare number read as years,aged,67,male,male,GSE274557:Pt-8,Pt-8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1453,36601,counts,pixel,0.3726262461981637,platform_constant,True,H&E,0.49998692982712944,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714180,,,train,hesrt,samples/GSE274557/GSM8714180,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8714181,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,419,36601,counts,pixel,0.35842293906810035,platform_constant,True,H&E,0.49999099439851585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714181,,,train,hesrt,samples/GSE274557/GSM8714181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8714182,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1701,36601,counts,pixel,0.35842293906810035,platform_constant,True,H&E,0.49999099439851585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714182,,,train,hesrt,samples/GSE274557/GSM8714182,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8714183,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,PDX for primary PDAC,xenograft,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, carboplatin/FOLFOX, gemcitabine/abraxane",adult,age rule: bare number read as years,adult,64,male,male,GSE274557:Pt-10,Pt-10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4339,18085,counts,pixel,0.2499617275404812,platform_constant,True,H&E,0.4999957924351921,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714183,,,train,hesrt,samples/GSE274557/GSM8714183,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.42, ""life_stage"": 0.98}",uberon,low_confidence_annotation -GSM8714184,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,PDX for primary PDAC,xenograft,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2108,18085,counts,pixel,0.2493695801182258,platform_constant,True,H&E,0.4999967740736797,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714184,,,train,hesrt,samples/GSE274557/GSM8714184,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.91, ""disease_status"": 0.97, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, +GSM8714184,GSE274557,GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,PDX for primary PDAC,xenograft,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,"FOLFIRINOX, Capecitabine, gemcitabine/abraxane/ denosumab",aged,age rule: bare number read as years,aged,82,female,female,GSE274557:Pt-13,Pt-13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2108,18085,counts,pixel,0.24936958011822588,platform_constant,True,H&E,0.49999677407367976,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40269162,,GSM8714184,,,train,hesrt,samples/GSE274557/GSM8714184,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.91, ""disease_status"": 0.97, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, GSM8453028,GSE274572,GSE274572,Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0000947,aorta,Plaque section from human aorta,primary tissue,,,disease,luna,atherosclerosis,,adult,age rule: age in years,not stated,54 years,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2329,33538,counts,pixel,4.42231342594175,platform_constant,True,H&E,4.42231342594175,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1093/cvr/cvaf112,GSM8453028,,,train,hesrt,samples/GSE274572/GSM8453028,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8453029,GSE274572,GSE274572,Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0000947,aorta,Plaque section from human aorta,primary tissue,,,disease,luna,atherosclerosis,,adult,age rule: age in years,not stated,54 years,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2497,33538,counts,pixel,4.422313425941773,platform_constant,True,H&E,4.422313425941773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1093/cvr/cvaf112,GSM8453029,,,train,hesrt,samples/GSE274572/GSM8453029,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8453030,GSE274572,GSE274572,Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0000947,aorta,Plaque section from human aorta,primary tissue,,,disease,luna,atherosclerosis,,adult,age rule: age in years,not stated,54 years,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2426,33538,counts,pixel,4.422313425941749,platform_constant,True,H&E,4.422313425941749,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.1093/cvr/cvaf112,GSM8453030,,,train,hesrt,samples/GSE274572/GSM8453030,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4861,19 +4861,19 @@ GSM8453749,GSE274623,GSE274623,Single-cell resolution spatial analysis of antige GSM8453750,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,138417,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051627292252,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453750,,,train,sda-all,samples/GSE274623/GSM8453750,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8453751,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,46399,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453751,,,train,sda-all,samples/GSE274623/GSM8453751,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8453752,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,103438,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000144675925925,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453752,,,train,sda-all,samples/GSE274623/GSM8453752,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8453753,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,164762,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948355643694,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453753,,,train,sda-all,samples/GSE274623/GSM8453753,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8453753,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,164762,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999483556436947,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453753,,,train,sda-all,samples/GSE274623/GSM8453753,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8453754,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,81602,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000111968579894,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453754,,,train,sda-all,samples/GSE274623/GSM8453754,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8453755,GSE274623,GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,46807,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000011456328476,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8453755,,,train,sda-all,samples/GSE274623/GSM8453755,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8454077,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,Normal,Patho-DBiT Protocol,embryonic,luna,embryonic,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1408,21093,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454077,,,train,sda-all,samples/GSE274641/GSM8454077,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.67, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8454078,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,Normal,Patho-DBiT Protocol,embryonic,luna,embryonic,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1369,25201,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454078,,,train,sda-all,samples/GSE274641/GSM8454078,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.5700000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM8454079,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,primary tissue,,,normal,luna,Normal,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2003,25047,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454079,,,train,sda-all,samples/GSE274641/GSM8454079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8454080,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,Normal,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1455,25104,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454080,,,train,sda-all,samples/GSE274641/GSM8454080,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8454081,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0005062,lymph node disorder;lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2497,26397,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454081,,,train,sda-all,samples/GSE274641/GSM8454081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8454082,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0005062,lymph node disorder;lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,8632,67517,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454082,,,train,sda-all,samples/GSE274641/GSM8454082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8454083,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,primary tissue,,,normal,luna,Normal,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2365,25735,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454083,,,train,sda-all,samples/GSE274641/GSM8454083,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8454084,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0018905,lymph node disorder;diffuse large B-cell lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2116,26147,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454084,,,train,sda-all,samples/GSE274641/GSM8454084,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8454085,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0018905,lymph node disorder;diffuse large B-cell lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2170,25172,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454085,,,train,sda-all,samples/GSE274641/GSM8454085,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8454234,GSE274657+GSE274659,GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,JAK1_high,adult,age rule: bare number read as years,adult,60,unknown,,GSE274657:Patient_2,Patient_2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1534,18085,counts,pixel,3.590300329793876,platform_constant,True,H&E,3.590300329793876,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40883550,,GSM8454234,,,train,hesrt,samples/GSE274657/GSM8454234,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.72, ""life_stage"": 1.0}",, +GSM8454077,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,Normal,Patho-DBiT Protocol,embryonic,luna,embryonic,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1408,21093,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454077,,,train,sda-all,samples/GSE274641/GSM8454077,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.67, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8454078,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,Normal,Patho-DBiT Protocol,embryonic,luna,embryonic,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1369,25201,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454078,,,train,sda-all,samples/GSE274641/GSM8454078,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.5700000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM8454079,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,primary tissue,,,normal,luna,Normal,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2003,25047,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454079,,,train,sda-all,samples/GSE274641/GSM8454079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8454080,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,Normal,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1455,25104,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454080,,,train,sda-all,samples/GSE274641/GSM8454080,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8454081,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0005062,lymph node disorder;lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2497,26397,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454081,,,train,sda-all,samples/GSE274641/GSM8454081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8454082,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0005062,lymph node disorder;lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,8632,67517,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454082,,,train,sda-all,samples/GSE274641/GSM8454082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8454083,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,primary tissue,,,normal,luna,Normal,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2365,25735,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454083,,,train,sda-all,samples/GSE274641/GSM8454083,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8454084,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0018905,lymph node disorder;diffuse large B-cell lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2116,26147,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454084,,,train,sda-all,samples/GSE274641/GSM8454084,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8454085,GSE274641,GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,tumour tissue,MONDO:0004928;MONDO:0018905,lymph node disorder;diffuse large B-cell lymphoma,disease,luna,Lymphoma,Patho-DBiT Protocol,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2170,25172,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,39353436,,GSM8454085,,,train,sda-all,samples/GSE274641/GSM8454085,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8454234,GSE274657+GSE274659,GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,JAK1_high,adult,age rule: bare number read as years,adult,60,unknown,,GSE274657:Patient_2,Patient_2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1534,18085,counts,pixel,3.5903003297938754,platform_constant,True,H&E,3.5903003297938754,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40883550,,GSM8454234,,,train,hesrt,samples/GSE274657/GSM8454234,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.72, ""life_stage"": 1.0}",, GSM8454235,GSE274657+GSE274659,GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,JAK1_high,adult,age rule: bare number read as years,adult,58,unknown,,GSE274657:Patient_8,Patient_8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4116,18085,counts,pixel,4.785282332147371,platform_constant,True,H&E,4.785282332147371,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40883550,,GSM8454235,,,train,hesrt,samples/GSE274657/GSM8454235,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM8454236,GSE274657+GSE274659,GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,JAK1_low,adult,age rule: bare number read as years,adult,43,unknown,,GSE274657:Patient_16,Patient_16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4592,18085,counts,pixel,7.315563969495602,platform_constant,True,H&E,7.315563969495602,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40883550,,GSM8454236,,,train,hesrt,samples/GSE274657/GSM8454236,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.8, ""life_stage"": 1.0}",, GSM8454237,GSE274657+GSE274659,GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,JAK1_low,aged,age rule: bare number read as years,aged,69,unknown,,GSE274657:Patient_17,Patient_17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,7.315038519907406,platform_constant,True,H&E,7.315038519907406,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40883550,,GSM8454237,,,train,hesrt,samples/GSE274657/GSM8454237,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.85, ""life_stage"": 1.0}",, @@ -4882,11 +4882,11 @@ GSM8454388,GSE246459+GSE274665,GSE274665,Differential Activity of MAPK signallin GSM8454389,GSE246459+GSE274665,GSE274665,Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2932,17943,counts,pixel,4.438143042897383,platform_constant,True,H&E,4.438143042897383,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627211,,GSM8454389,,,train,hesrt,samples/GSE274665/GSM8454389,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8454390,GSE246459+GSE274665,GSE274665,Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3966,17943,counts,pixel,4.433568913264562,platform_constant,True,H&E,4.433568913264562,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39627211,,GSM8454390,,,train,hesrt,samples/GSE274665/GSM8454390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8454446,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),treatment-naïve,not stated,luna,not stated,,unknown,,GSE274673:Patient 1,Patient 1,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,166982,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000125502008033,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454446,,,train,sda-all,samples/GSE274673/GSM8454446,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8454447,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),chemoradiotherapy-treated,not stated,luna,not stated,,unknown,,GSE274673:Patient 2,Patient 2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,97229,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999918706397067,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454447,,,train,sda-all,samples/GSE274673/GSM8454447,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8454447,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),chemoradiotherapy-treated,not stated,luna,not stated,,unknown,,GSE274673:Patient 2,Patient 2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,97229,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999187063970674,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454447,,,train,sda-all,samples/GSE274673/GSM8454447,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8454448,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),chemoradiotherapy-treated,not stated,luna,not stated,,unknown,,GSE274673:Patient 3,Patient 3,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,28375,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999931394072447,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454448,,,train,sda-all,samples/GSE274673/GSM8454448,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8454449,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),treatment-naïve,not stated,luna,not stated,,unknown,,GSE274673:Patient 4,Patient 4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,102797,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454449,,,train,sda-all,samples/GSE274673/GSM8454449,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8454450,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),treatment-naïve,not stated,luna,not stated,,unknown,,GSE274673:Patient 5,Patient 5,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,273201,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025815778604,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454450,,,train,sda-all,samples/GSE274673/GSM8454450,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8454451,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),chemoradiotherapy-treated,not stated,luna,not stated,,unknown,,GSE274673:Patient 6,Patient 6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,42116,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999720226175049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454451,,,train,sda-all,samples/GSE274673/GSM8454451,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8454451,GSE274673,GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic ductal adenocarcinoma (PDAC),tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic ductal adenocarcinoma (PDAC),chemoradiotherapy-treated,not stated,luna,not stated,,unknown,,GSE274673:Patient 6,Patient 6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_480g,xenium-2.0.0.10,cell,42116,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997202261750495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8454451,,,train,sda-all,samples/GSE274673/GSM8454451,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8455199,GSE274697,GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,GBM,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4180,19465,counts,um,1.0,verified,True,H&E-like (heuristic),5.12046255811988,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain has some problems,41559043,,GSM8455199,,,val,sda-all,samples/GSE274697/GSM8455199,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8455200,GSE274697,GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,GBM,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3954,19465,counts,um,1.0,verified,True,H&E-like (heuristic),5.261251954141597,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain has some problems,41559043,,GSM8455200,,,val,sda-all,samples/GSE274697/GSM8455200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8455201,GSE274697,GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,GBM,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4362,19465,counts,um,1.0,verified,True,H&E-like (heuristic),5.525835186226113,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain has some problems,41559043,,GSM8455201,,,val,sda-all,samples/GSE274697/GSM8455201,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4894,7 +4894,7 @@ GSM8455202,GSE274697,GSE274697,The Mechanism Study of Intermittent Fasting in Gl GSM8455203,GSE274697,GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,GBM+IF,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3786,19465,counts,um,1.0,verified,True,H&E-like (heuristic),5.6973764882012095,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),background may not be typical H&E,41559043,,GSM8455203,,,val,sda-all,samples/GSE274697/GSM8455203,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8455204,GSE274697,GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,,GBM+IF,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3894,19465,counts,um,1.0,verified,True,H&E-like (heuristic),5.568355332286101,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),background may not be typical H&E,41559043,,GSM8455204,,,val,sda-all,samples/GSE274697/GSM8455204,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8457566,GSE274767,GSE274767,Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,,Day 0,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2218,32589,counts,pixel,7.142856785714311,platform_constant,True,H&E,7.142856785714311,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39611685,10.1128/mbio.02562-24,GSM8457566,,,val,hesrt,samples/GSE274767/GSM8457566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8457567,GSE274767,GSE274767,Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,,Day 14,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3982,32589,counts,pixel,7.142856785714296,platform_constant,True,H&E,7.142856785714296,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39611685,10.1128/mbio.02562-24,GSM8457567,,,val,hesrt,samples/GSE274767/GSM8457567,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8457567,GSE274767,GSE274767,Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,,Day 14,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3982,32589,counts,pixel,7.1428567857142955,platform_constant,True,H&E,7.1428567857142955,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39611685,10.1128/mbio.02562-24,GSM8457567,,,val,hesrt,samples/GSE274767/GSM8457567,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8457833,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,iTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2349,32285,counts,pixel,4.400262376240797,platform_constant,True,H&E,4.400262376240797,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457833,,,train,hesrt,samples/GSE274782/GSM8457833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8457834,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,cTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2162,32285,counts,pixel,4.410406430999422,platform_constant,True,H&E,4.410406430999422,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457834,,,train,hesrt,samples/GSE274782/GSM8457834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8457835,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,sham,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2225,32285,counts,pixel,4.409465345055363,platform_constant,True,H&E,4.409465345055363,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457835,,,train,hesrt,samples/GSE274782/GSM8457835,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -4905,7 +4905,7 @@ GSM8457839,GSE274782,GSE274782,Spatially profiling the molecular effects of repe GSM8457840,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,cTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2082,32285,counts,pixel,4.409827690667172,platform_constant,True,H&E,4.409827690667172,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457840,,,train,hesrt,samples/GSE274782/GSM8457840,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8457841,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,iTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2142,32285,counts,pixel,4.40652784225494,platform_constant,True,H&E,4.40652784225494,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457841,,,train,hesrt,samples/GSE274782/GSM8457841,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8457842,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,sham,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1609,32285,counts,pixel,4.347282542040089,platform_constant,True,H&E,4.347282542040089,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457842,,,train,hesrt,samples/GSE274782/GSM8457842,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM8457843,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,iTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1895,32285,counts,pixel,4.343419182796271,platform_constant,True,H&E,4.343419182796271,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457843,,,train,hesrt,samples/GSE274782/GSM8457843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8457843,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,iTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1895,32285,counts,pixel,4.3434191827962705,platform_constant,True,H&E,4.3434191827962705,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457843,,,train,hesrt,samples/GSE274782/GSM8457843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8457844,GSE274782,GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,perturbation,luna,,cTBS,adult,age rule: age with unit,aged,57–72 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2125,32285,counts,pixel,4.343177555359486,platform_constant,True,H&E,4.343177555359486,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40888470,,GSM8457844,,,train,hesrt,samples/GSE274782/GSM8457844,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8463210,GSE274970,GSE274970,Morphogenic accommodations for unidirectional airflow in the chicken lung,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,Gallus gallus,lung,luna,UBERON:0002048,lung,E20 lung,primary tissue,,,normal,luna,,Leghorn,fetal,luna,fetal,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,315012,27771,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM8463210,,,train,sda-all,samples/GSE274970/GSM8463210,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.67}",, GSM8464544,GSE275026,GSE275026,Plaque-induced transcriptional reprogramming of microglia towards lymphoid receptor expression protects against Alzheimer’s disease.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Cx3cr1CreErt2/+(Litt),adult,age rule: age with unit,adult,8 months,male,M,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,112993,462,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41193812,,GSM8464544,,,val,sda-all,samples/GSE275026/GSM8464544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -4929,7 +4929,7 @@ GSM8471389,GSE275144,GSE275144,Creeping fat-derived mechanosensitive fibroblasts GSM8472671,GSE275201,GSE275201,Spatial Transcriptomics of Brains Infected with VEEV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Uninfected controls,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2757,32589,counts,pixel,7.142856785714311,platform_constant,True,H&E,7.142856785714311,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39749347,,GSM8472671,,,val,hesrt,samples/GSE275201/GSM8472671,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8472672,GSE275201,GSE275201,Spatial Transcriptomics of Brains Infected with VEEV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005550,infectious disease,disease,luna,,Infected with VEEV,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2798,32589,counts,pixel,7.142856785714311,platform_constant,True,H&E,7.142856785714311,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39749347,,GSM8472672,,,val,hesrt,samples/GSE275201/GSM8472672,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8473629,GSE275252,GSE275252,The G Protein-Coupled Receptor ADGRG6 Maintains Mouse Growth Plate Homeostasis by Negatively Regulating IHH Signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002103,hindlimb,hindlimb,primary tissue,,,perturbation,luna,,WT & Adgrg6 mutant,neonatal or infant,age rule: postnatal day,not stated,20 postnatal days,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1852,19465,counts,pixel,4.788324088563911,platform_constant,True,H&E,4.788324088563911,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39236220,,GSM8473629,,,train,hesrt,samples/GSE275252/GSM8473629,sda-tissue-disease-2.3,"{""organ"": 0.47000000000000003, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.92, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM8476393,GSE275405+GSE275406,GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0004286,pancreatic intraductal papillary-mucinous neoplasm,disease,luna,,normal feed,adult,luna,adult,5 Months 7 days,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3645,19465,counts,pixel,14.921828364186496,platform_constant,True,H&E,14.921828364186496,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39277181,,GSM8476393,,,train,hesrt,samples/GSE275405/GSM8476393,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8476393,GSE275405+GSE275406,GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0004286,pancreatic intraductal papillary-mucinous neoplasm,disease,luna,,normal feed,adult,luna,adult,5 Months 7 days,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3645,19465,counts,pixel,14.921828364186497,platform_constant,True,H&E,14.921828364186497,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39277181,,GSM8476393,,,train,hesrt,samples/GSE275405/GSM8476393,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8476394,GSE275405+GSE275406,GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0004286,pancreatic intraductal papillary-mucinous neoplasm,disease,luna,,normal feed,adult,luna,adult,5 Months 7 days,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4047,19465,counts,pixel,8.463687503554567,platform_constant,True,H&E,8.463687503554567,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39277181,,GSM8476394,,,train,hesrt,samples/GSE275405/GSM8476394,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8476395,GSE275405+GSE275406,GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0004286,pancreatic intraductal papillary-mucinous neoplasm,disease,luna,,doxycycline feed,adult,luna,adult,5 Months 4 days,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3677,19465,counts,pixel,8.911183380186221,platform_constant,True,H&E,8.911183380186221,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39277181,,GSM8476395,,,train,hesrt,samples/GSE275405/GSM8476395,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8476396,GSE275405+GSE275406,GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0004286,pancreatic intraductal papillary-mucinous neoplasm,disease,luna,,doxycycline feed,adult,luna,adult,5 Months 4 days,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3236,19465,counts,pixel,9.696456075364956,platform_constant,True,H&E,9.696456075364956,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39277181,,GSM8476396,,,train,hesrt,samples/GSE275405/GSM8476396,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.44, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation @@ -4951,18 +4951,18 @@ GSM8490675,GSE276083,GSE276083,Single cell spatial transcriptome and RNA-seq ana GSM8490676,GSE276083,GSE276083,Single cell spatial transcriptome and RNA-seq analysis in human lung tissues with mycobacterial infection: Single cell spatial transcriptome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,mycobacteria-infected lung tissue,primary tissue,MONDO:0020590,mycobacterial infectious disease,disease,luna,MTB,,adult,age rule: bare number read as years,adult,64,male,M,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,45717,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM8490676,,,train,sda-all,samples/GSE276083/GSM8490676,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8490677,GSE276083,GSE276083,Single cell spatial transcriptome and RNA-seq analysis in human lung tissues with mycobacterial infection: Single cell spatial transcriptome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,mycobacteria-infected lung tissue,primary tissue,MONDO:0020590,mycobacterial infectious disease,disease,luna,NTM,,adult,age rule: bare number read as years,adult,56,female,F,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,62491,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM8490677,,,train,sda-all,samples/GSE276083/GSM8490677,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8490678,GSE276083,GSE276083,Single cell spatial transcriptome and RNA-seq analysis in human lung tissues with mycobacterial infection: Single cell spatial transcriptome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,mycobacteria-infected lung tissue,primary tissue,MONDO:0020590,mycobacterial infectious disease,disease,luna,NTM,,adult,age rule: bare number read as years,adult,63,female,F,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,52676,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM8490678,,,train,sda-all,samples/GSE276083/GSM8490678,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8494455,GSE276273,GSE276273,Mouse Skin Xenium In Situ Spatial Gene Expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,disease,luna,,MmuPV1,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,295245,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991374154667,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,39672169,,GSM8494455,,,train,sda-all,samples/GSE276273/GSM8494455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.58, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8494455,GSE276273,GSE276273,Mouse Skin Xenium In Situ Spatial Gene Expression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,disease,luna,,MmuPV1,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,295245,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999137415466705,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,39672169,,GSM8494455,,,train,sda-all,samples/GSE276273/GSM8494455,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.58, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8500534,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,lymph node,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3384,17943,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.319136050715769,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500534,,,train,sda-all,samples/GSE276542/GSM8500534,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8500535,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,tonsil,luna,UBERON:0002372,tonsil,tonsil,primary tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3318,17943,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.323414332541781,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500535,,,train,sda-all,samples/GSE276542/GSM8500535,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.32, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8500536,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL biopsies,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1197,17943,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.324173730530275,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500536,,,train,sda-all,samples/GSE276542/GSM8500536,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8500537,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL biopsies,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1723,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.502847217991357,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500537,,,train,sda-all,samples/GSE276542/GSM8500537,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8500538,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL biopsies,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1827,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8206545925621063,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500538,,,train,sda-all,samples/GSE276542/GSM8500538,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8500538,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL biopsies,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1827,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8206545925621067,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500538,,,train,sda-all,samples/GSE276542/GSM8500538,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8500539,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL resection,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.004534803968728,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500539,,,train,sda-all,samples/GSE276542/GSM8500539,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8500540,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL resection,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.923332635762713,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500540,,,train,sda-all,samples/GSE276542/GSM8500540,sda-tissue-disease-2.3,"{""organ"": 0.72, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8500541,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,lymph node,tumour tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4674,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.912354148114175,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500541,,,train,sda-all,samples/GSE276542/GSM8500541,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.72, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8500542,GSE276542,GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,tonsil,luna,UBERON:0002372,tonsil,tonsil,primary tissue,MONDO:0018905;MONDO:0968974,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4923,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8665118377579377,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42010788,,GSM8500542,,,train,sda-all,samples/GSE276542/GSM8500542,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.58, ""disease_status"": 0.16, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation -GSM8506649,GSE276841,GSE276841,Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4501,18085,counts,pixel,10.012246384262356,platform_constant,True,H&E,10.012246384262356,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39818911,,GSM8506649,,,train,hesrt,samples/GSE276841/GSM8506649,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8506650,GSE276841,GSE276841,Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3128,18085,counts,pixel,11.727189033715636,platform_constant,True,H&E,11.727189033715636,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39818911,,GSM8506650,,,train,hesrt,samples/GSE276841/GSM8506650,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8506649,GSE276841,GSE276841,Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4501,18085,counts,pixel,10.012246384262355,platform_constant,True,H&E,10.012246384262355,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39818911,,GSM8506649,,,train,hesrt,samples/GSE276841/GSM8506649,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8506650,GSE276841,GSE276841,Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,glioblastoma,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3128,18085,counts,pixel,11.727189033715637,platform_constant,True,H&E,11.727189033715637,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39818911,,GSM8506650,,,train,hesrt,samples/GSE276841/GSM8506650,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8507225,GSE276866,GSE276866,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002108,small intestine,Proximal Small Intestine,primary tissue,,,disease,luna,,ApcMin/+,adult,age rule: age with unit,adult,13 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4975,56953,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41792309,,GSM8507225,,,test,sda-all,samples/GSE276866/GSM8507225,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.85, ""disease_status"": 0.97, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM8507226,GSE276866,GSE276866,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,,,disease,luna,,ApcMin/+,adult,age rule: age with unit,adult,13 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4973,56953,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41792309,,GSM8507226,,,test,sda-all,samples/GSE276866/GSM8507226,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8507227,GSE276866,GSE276866,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0000059,large intestine,Large Intestine,primary tissue,,,disease,luna,,ApcMin/+,adult,age rule: age with unit,adult,13 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4810,56953,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41792309,,GSM8507227,,,test,sda-all,samples/GSE276866/GSM8507227,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.98, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -5043,10 +5043,10 @@ GSM8524873,GSE277577,GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype R GSM8524874,GSE277577,GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,disease,luna,,(NBH) Non-infectious Brain Homogenate,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2787,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.888090154837266,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42120390,,GSM8524874,,,train,sda-all,samples/GSE277577/GSM8524874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation GSM8524875,GSE277577,GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,(NBH) Non-infectious Brain Homogenate,adult,luna,adult,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2725,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.076473409072862,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42120390,,GSM8524875,,,train,sda-all,samples/GSE277577/GSM8524875,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 0.91}",, GSM8524879,GSE277577,GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,(NBH) Non-infectious Brain Homogenate,adult,luna,adult,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2678,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.886224719076924,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42120390,,GSM8524879,,,train,sda-all,samples/GSE277577/GSM8524879,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, -GSM8524880,GSE277577,GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005429,prion disease,disease,luna,,(RML6) Prion-containing brain homogenate,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2071,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.084759178289231,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42120390,,GSM8524880,,,train,sda-all,samples/GSE277577/GSM8524880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.74}",, -GSM8534862,GSE277936,GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,fixed frozen mouse lung section,primary tissue,,,normal,luna,,littermate Egln1f/f (WT) control,not stated,luna,not stated,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Tissue Atlassing Gene Expression,xenium-2.0.0.10,cell,89453,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999884223525778,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8534862,,,train,sda-all,samples/GSE277936/GSM8534862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8524880,GSE277577,GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005429,prion disease,disease,luna,,(RML6) Prion-containing brain homogenate,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2071,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.0847591782892305,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42120390,,GSM8524880,,,train,sda-all,samples/GSE277577/GSM8524880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.74}",, +GSM8534862,GSE277936,GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,fixed frozen mouse lung section,primary tissue,,,normal,luna,,littermate Egln1f/f (WT) control,not stated,luna,not stated,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Tissue Atlassing Gene Expression,xenium-2.0.0.10,cell,89453,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998842235257784,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8534862,,,train,sda-all,samples/GSE277936/GSM8534862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8534863,GSE277936,GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,littermate Egln1f/f (WT) control,adult,age rule: age with unit,not stated,2–3.5 months,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,10x Genomics Xenium In Situ,,,cell,39594,541,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8534863,,,train,hesrt,samples/GSE277936/GSM8534863,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8534864,GSE277936,GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,fixed frozen mouse lung section,primary tissue,MONDO:0005149,pulmonary hypertension,disease,luna,,Egln1Tie2Cre (KO),not stated,luna,not stated,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Tissue Atlassing Gene Expression,xenium-2.0.0.10,cell,87805,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999870947759652,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8534864,,,train,sda-all,samples/GSE277936/GSM8534864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8534864,GSE277936,GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,fixed frozen mouse lung section,primary tissue,MONDO:0005149,pulmonary hypertension,disease,luna,,Egln1Tie2Cre (KO),not stated,luna,not stated,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Tissue Atlassing Gene Expression,xenium-2.0.0.10,cell,87805,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998709477596526,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8534864,,,train,sda-all,samples/GSE277936/GSM8534864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8534865,GSE277936,GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,fixed frozen mouse lung section,primary tissue,MONDO:0005149,pulmonary hypertension,disease,luna,,Egln1Tie2Cre (KO),not stated,luna,not stated,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse Tissue Atlassing Gene Expression,xenium-2.0.0.10,cell,83996,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000257785110332,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8534865,,,train,sda-all,samples/GSE277936/GSM8534865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8540632,GSE278133,GSE278133,Defective ventral neurogenesis due to midfetal Chd8 mutation drives autistic-like behavior in mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,,adult,luna,adult,8 weeks of age,male,Male,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,58826,1207,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42203765,,GSM8540632,,,test,sda-all,samples/GSE278133/GSM8540632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8541068,GSE278169,GSE278169,Multi-omic analysis reveals retinoic acid molecular drivers for fibrosis and regenerative repair in skin fibrosis [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,,unwounded control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1427,32285,counts,pixel,4.363613416336368,platform_constant,True,H&E,4.363613416336368,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40816279,,GSM8541068,,,train,hesrt,samples/GSE278169/GSM8541068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.44, ""life_stage"": 0.99}",uberon,low_confidence_annotation @@ -5070,35 +5070,35 @@ GSM9046245,GSE278603,GSE278603,Digital reconstruction of spatiotemporal atlas un GSM9046246,GSE278603,GSE278603,Digital reconstruction of spatiotemporal atlas unveils the cellular origins and signaling networks underlying early mouse organogenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Whole embryo,whole embryo/organism,,,normal,luna,,WT,embryonic,age rule: embryonic day,embryonic,E7.75,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,23736,18790,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9046246,,,train,sda-all,samples/GSE278603/GSM9046246,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9046247,GSE278603,GSE278603,Digital reconstruction of spatiotemporal atlas unveils the cellular origins and signaling networks underlying early mouse organogenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Whole embryo,whole embryo/organism,,,normal,luna,,WT,embryonic,age rule: embryonic day,embryonic,E8.0,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,11048,16636,counts,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9046247,,,train,sda-all,samples/GSE278603/GSM9046247,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9046248,GSE278603,GSE278603,Digital reconstruction of spatiotemporal atlas unveils the cellular origins and signaling networks underlying early mouse organogenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Whole embryo,whole embryo/organism,,,normal,luna,,WT,embryonic,age rule: embryonic day,embryonic,E8.0,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,27266,19046,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9046248,,,train,sda-all,samples/GSE278603/GSM9046248,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8551250,GSE278611,GSE278611,Clearance of p21-highly-expressing senescent cells accelerates wound healing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,dorsal cutaneous skin wound,primary tissue,,,perturbation,luna,,"tamoxifen, 6 doses",not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_100g,xenium-1.7.1.0,cell,332833,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999985240288109,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39537987,,GSM8551250,,,val,sda-all,samples/GSE278611/GSM8551250,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.71, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM8551250,GSE278611,GSE278611,Clearance of p21-highly-expressing senescent cells accelerates wound healing,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,dorsal cutaneous skin wound,primary tissue,,,perturbation,luna,,"tamoxifen, 6 doses",not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_100g,xenium-1.7.1.0,cell,332833,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999852402881095,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39537987,,GSM8551250,,,val,sda-all,samples/GSE278611/GSM8551250,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.71, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8551262,GSE278614,GSE278614,Single-Cell Spatial Mapping of Human Kidney Development Reveals Cellular Niches and Lineage Dynamics [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Fetal Kidney,primary tissue,,,normal,luna,,,fetal,luna,fetal,18w5d,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,230538,995,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42533102,,GSM8551262,,,test,sda-all,samples/GSE278614/GSM8551262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8551263,GSE278614,GSE278614,Single-Cell Spatial Mapping of Human Kidney Development Reveals Cellular Niches and Lineage Dynamics [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Fetal Kidney,primary tissue,,,normal,luna,,,fetal,luna,fetal,15w6d,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,127023,995,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42533102,,GSM8551263,,,test,sda-all,samples/GSE278614/GSM8551263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8551264,GSE278614,GSE278614,Single-Cell Spatial Mapping of Human Kidney Development Reveals Cellular Niches and Lineage Dynamics [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Fetal Kidney,primary tissue,,,normal,luna,,,fetal,luna,fetal,19w0d,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,118197,995,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42533102,,GSM8551264,,,test,sda-all,samples/GSE278614/GSM8551264,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8551438,GSE278621,GSE278621,Spatial transcriptome profile of liver tissue from a patient with metabolic dysfunction-associated steatotic liver disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,primary tissue,MONDO:0013209,metabolic dysfunction-associated steatotic liver disease,disease,luna,Metabolic dysfunction-associated steatotic liver disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3738,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.786319673502356,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42329773,,GSM8551438,,,train,sda-all,samples/GSE278621/GSM8551438,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8552410,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,non-ALD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,2940,37117,counts,pixel,4.110784330476935,platform_constant,True,H&E,4.110784330476935,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-9da209a12422,library_alias,GSM8552414,train,hesrt,samples/GSE278662/GSM8552410,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8552411,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,non-ALD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,3774,37117,counts,pixel,3.946803292271359,platform_constant,True,H&E,3.946803292271359,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-534189bba4e9,library_alias,GSM8552415,train,hesrt,samples/GSE278662/GSM8552411,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8552410,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,non-ALD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,2940,37117,counts,pixel,4.1107843304769345,platform_constant,True,H&E,4.1107843304769345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-9da209a12422,library_alias,GSM8552414,train,hesrt,samples/GSE278662/GSM8552410,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8552411,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,non-ALD,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,3774,37117,counts,pixel,3.9468032922713587,platform_constant,True,H&E,3.9468032922713587,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-534189bba4e9,library_alias,GSM8552415,train,hesrt,samples/GSE278662/GSM8552411,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552412,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0002251,hepatitis,disease,luna,alcohol-associated hepatitis,AH,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,3947,37117,counts,pixel,4.690671941871225,platform_constant,True,H&E,4.690671941871225,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-c786341f7290,library_alias,GSM8552416,train,hesrt,samples/GSE278662/GSM8552412,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8552413,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0002251,hepatitis,disease,luna,alcohol-associated hepatitis,AH,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,3352,37117,counts,pixel,3.67839413015074,platform_constant,True,H&E,3.67839413015074,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-10014ebce83b,library_alias,GSM8552417,train,hesrt,samples/GSE278662/GSM8552413,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8552413,GSE278662,GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0002251,hepatitis,disease,luna,alcohol-associated hepatitis,AH,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium CytAssist,,,spot,3352,37117,counts,pixel,3.6783941301507395,platform_constant,True,H&E,3.6783941301507395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39592394,,CG-10014ebce83b,library_alias,GSM8552417,train,hesrt,samples/GSE278662/GSM8552413,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8552940,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4351,17943,counts,pixel,3.9924453479905457,platform_constant,True,H&E,3.9924453479905457,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552940,,,train,hesrt,samples/GSE278694/GSM8552940,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552941,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1389,36601,counts,pixel,3.965247517586142,platform_constant,True,H&E,3.965247517586142,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552941,,,train,hesrt,samples/GSE278694/GSM8552941,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8552942,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4579,36601,counts,pixel,4.38409344544115,platform_constant,True,H&E,4.38409344544115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552942,,,train,hesrt,samples/GSE278694/GSM8552942,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552943,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2276,17943,counts,pixel,4.137362538727917,platform_constant,True,H&E,4.137362538727917,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552943,,,train,hesrt,samples/GSE278694/GSM8552943,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8552944,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3088,36601,counts,pixel,3.9523351479784634,platform_constant,True,H&E,3.9523351479784634,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552944,,,train,hesrt,samples/GSE278694/GSM8552944,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8552945,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2247,17943,counts,pixel,3.987500035927388,platform_constant,True,H&E,3.987500035927388,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552945,,,train,hesrt,samples/GSE278694/GSM8552945,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8552944,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3088,36601,counts,pixel,3.9523351479784625,platform_constant,True,H&E,3.9523351479784625,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552944,,,train,hesrt,samples/GSE278694/GSM8552944,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8552945,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2247,17943,counts,pixel,3.9875000359273876,platform_constant,True,H&E,3.9875000359273876,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552945,,,train,hesrt,samples/GSE278694/GSM8552945,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552946,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,4.156992658426844,platform_constant,True,H&E,4.156992658426844,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552946,,,train,hesrt,samples/GSE278694/GSM8552946,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8552947,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2580,17943,counts,pixel,4.022390291239577,platform_constant,True,H&E,4.022390291239577,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552947,,,train,hesrt,samples/GSE278694/GSM8552947,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552948,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2677,36601,counts,pixel,3.9162090297059153,platform_constant,True,H&E,3.9162090297059153,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552948,,,train,hesrt,samples/GSE278694/GSM8552948,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552949,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1824,36601,counts,pixel,3.906456089974096,platform_constant,True,H&E,3.906456089974096,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552949,,,train,hesrt,samples/GSE278694/GSM8552949,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552950,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4990,18085,counts,pixel,3.8980887098282313,platform_constant,True,H&E,3.8980887098282313,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552950,,,train,hesrt,samples/GSE278694/GSM8552950,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8552951,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4855,18085,counts,pixel,3.983878797799961,platform_constant,True,H&E,3.983878797799961,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552951,,,train,hesrt,samples/GSE278694/GSM8552951,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8552951,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4855,18085,counts,pixel,3.9838787977999606,platform_constant,True,H&E,3.9838787977999606,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552951,,,train,hesrt,samples/GSE278694/GSM8552951,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8552952,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4325,18085,counts,pixel,4.1464770449210535,platform_constant,True,H&E,4.1464770449210535,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552952,,,train,hesrt,samples/GSE278694/GSM8552952,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552953,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4322,18085,counts,pixel,4.1690117447806285,platform_constant,True,H&E,4.1690117447806285,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552953,,,train,hesrt,samples/GSE278694/GSM8552953,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8552954,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4701,18085,counts,pixel,3.8416780286341714,platform_constant,True,H&E,3.8416780286341714,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552954,,,train,hesrt,samples/GSE278694/GSM8552954,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8552955,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,3.9086379713019688,platform_constant,True,H&E,3.9086379713019688,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552955,,,train,hesrt,samples/GSE278694/GSM8552955,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8552956,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4851,18085,counts,pixel,3.841226693734361,platform_constant,True,H&E,3.841226693734361,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552956,,,train,hesrt,samples/GSE278694/GSM8552956,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8552956,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4851,18085,counts,pixel,3.8412266937343613,platform_constant,True,H&E,3.8412266937343613,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552956,,,train,hesrt,samples/GSE278694/GSM8552956,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552957,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4012,18085,counts,pixel,3.898045768064406,platform_constant,True,H&E,3.898045768064406,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552957,,,train,hesrt,samples/GSE278694/GSM8552957,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552958,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4980,18085,counts,pixel,3.841508759403753,platform_constant,True,H&E,3.841508759403753,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552958,,,train,hesrt,samples/GSE278694/GSM8552958,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8552959,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4823,18085,counts,pixel,3.83129541881766,platform_constant,True,H&E,3.83129541881766,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552959,,,train,hesrt,samples/GSE278694/GSM8552959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8552959,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4823,18085,counts,pixel,3.8312954188176596,platform_constant,True,H&E,3.8312954188176596,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552959,,,train,hesrt,samples/GSE278694/GSM8552959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8552960,GSE278694,GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,3.897974201611597,platform_constant,True,H&E,3.897974201611597,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40680743,10.1016/j.ccell.2025.06.020,GSM8552960,,,train,hesrt,samples/GSE278694/GSM8552960,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8554642,GSE278766,GSE278766,Comparison of CosMx and GeoMx profiling performed on the same human kidney tissues [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,human kidney tissues,tumour tissue,MONDO:0021163,kidney neoplasm,disease,luna,kidney tumor,,not stated,luna,not stated,,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,283682,1207,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40311874,,GSM8554642,,,train,sda-all,samples/GSE278766/GSM8554642,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8555878,GSE278848,GSE278848,Visium Spatial Transcriptomics of the Human Hypothalamus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9830,18085,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,39910307,,GSM8555878,,,test,sda-all,samples/GSE278848/GSM8555878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -5170,24 +5170,24 @@ GSM8559003,GSE278969,GSE278969,Distinct cellular and spatial niches within the i GSM8559004,GSE278969,GSE278969,Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,UBERON:0007616,layer of synovial tissue,synovial tissue,primary tissue,MONDO:0005578,arthritic joint disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,3442,397,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40601776,,GSM8559004,,,train,sda-all,samples/GSE278969/GSM8559004,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",, GSM8559005,GSE278969,GSE278969,Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,UBERON:0007616,layer of synovial tissue,synovial tissue,primary tissue,MONDO:0005578,arthritic joint disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50959,527,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40601776,,GSM8559005,,,train,sda-all,samples/GSE278969/GSM8559005,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.96, ""life_stage"": 0.89}",, GSM8559006,GSE278969,GSE278969,Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,UBERON:0007616,layer of synovial tissue,synovial tissue,primary tissue,MONDO:0005578,arthritic joint disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,82341,534,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40601776,,GSM8559006,,,train,sda-all,samples/GSE278969/GSM8559006,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8563697,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,84,male,male,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4010,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563697,,,train,hesrt,samples/GSE279181/GSM8563697,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563698,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,61,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4005,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563698,,,train,hesrt,samples/GSE279181/GSM8563698,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563699,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,54,male,male,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4524,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563699,,,train,hesrt,samples/GSE279181/GSM8563699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563700,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,84,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,3006,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563700,,,train,hesrt,samples/GSE279181/GSM8563700,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563701,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,81,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4489,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563701,,,train,hesrt,samples/GSE279181/GSM8563701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563702,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,68,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4384,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563702,,,train,hesrt,samples/GSE279181/GSM8563702,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563703,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,42,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,3858,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563703,,,train,hesrt,samples/GSE279181/GSM8563703,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563704,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,52,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,3585,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563704,,,train,hesrt,samples/GSE279181/GSM8563704,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8563705,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,52,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4108,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563705,,,train,hesrt,samples/GSE279181/GSM8563705,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8563706,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,53,male,male,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,3726,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563706,,,train,hesrt,samples/GSE279181/GSM8563706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8563707,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4163,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563707,,,train,hesrt,samples/GSE279181/GSM8563707,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8563708,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,3877,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563708,,,train,hesrt,samples/GSE279181/GSM8563708,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8563709,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4691,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563709,,,train,hesrt,samples/GSE279181/GSM8563709,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563710,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,61,male,male,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,2826,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563710,,,train,hesrt,samples/GSE279181/GSM8563710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563711,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,60,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4509,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563711,,,train,hesrt,samples/GSE279181/GSM8563711,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8563712,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,60,female,female,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,4733,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563712,,,train,hesrt,samples/GSE279181/GSM8563712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8563713,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,male,male,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,3598,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563713,,,train,hesrt,samples/GSE279181/GSM8563713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8563714,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,male,male,,,,,Visium,GEO series text (assay_final.csv),10x Visium,sequencing-based,high-throughput sequencing,,,,2811,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563714,,,train,hesrt,samples/GSE279181/GSM8563714,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8563697,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,84,male,male,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4010,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563697,,,train,hesrt,samples/GSE279181/GSM8563697,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563698,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,61,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4005,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563698,,,train,hesrt,samples/GSE279181/GSM8563698,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563699,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,54,male,male,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4524,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563699,,,train,hesrt,samples/GSE279181/GSM8563699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563700,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,84,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,3006,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563700,,,train,hesrt,samples/GSE279181/GSM8563700,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563701,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,81,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4489,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563701,,,train,hesrt,samples/GSE279181/GSM8563701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563702,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,68,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4384,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563702,,,train,hesrt,samples/GSE279181/GSM8563702,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563703,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,42,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,3858,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563703,,,train,hesrt,samples/GSE279181/GSM8563703,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563704,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,52,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,3585,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563704,,,train,hesrt,samples/GSE279181/GSM8563704,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8563705,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,52,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4108,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563705,,,train,hesrt,samples/GSE279181/GSM8563705,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8563706,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,53,male,male,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,3726,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563706,,,train,hesrt,samples/GSE279181/GSM8563706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8563707,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4163,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563707,,,train,hesrt,samples/GSE279181/GSM8563707,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM8563708,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,3877,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563708,,,train,hesrt,samples/GSE279181/GSM8563708,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8563709,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4691,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563709,,,train,hesrt,samples/GSE279181/GSM8563709,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563710,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,61,male,male,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,2826,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563710,,,train,hesrt,samples/GSE279181/GSM8563710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563711,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,60,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4509,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563711,,,train,hesrt,samples/GSE279181/GSM8563711,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8563712,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,60,female,female,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,4733,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563712,,,train,hesrt,samples/GSE279181/GSM8563712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8563713,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,male,male,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,3598,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563713,,,train,hesrt,samples/GSE279181/GSM8563713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8563714,GSE279181+GSE279183,GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,MS,adult,age rule: bare number read as years,adult,50,male,male,,,,,Visium,GEO series text (assay_final.csv),Visium,sequencing-based,high-throughput sequencing,,,,2811,36601,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39501036,10.1038/s41593-024-01796-z,GSM8563714,,,train,hesrt,samples/GSE279181/GSM8563714,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8565271,GSE279255,GSE279255,Tissue-resident memory CD8 T Cell Diversity is Spatiotemporally Imprinted,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002108,small intestine,Small Intestine,primary tissue,MONDO:0005550,infectious disease,disease,luna,,LCMV infection and P14 CD8 T cell transfer,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,399177,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39843748,,GSM8565271,,,train,hesrt,samples/GSE279255/GSM8565271,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8565626,GSE279273,GSE279273,Spatially Resolved Transcriptomic Signatures of Hippocampal Subregions and Arc-Expressing Ensembles in Active Place Avoidance Memory [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,Coronal Mouse Brain with Bilateral Dorsal Hippocampus,primary tissue,,,perturbation,luna,,trained,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4152,32285,counts,pixel,4.006060881677566,platform_constant,True,H&E,4.006060881677566,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38260257,,GSM8565626,,,train,hesrt,samples/GSE279273/GSM8565626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.72, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8565627,GSE279273,GSE279273,Spatially Resolved Transcriptomic Signatures of Hippocampal Subregions and Arc-Expressing Ensembles in Active Place Avoidance Memory [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002421,hippocampal formation,Coronal Mouse Brain with Bilateral Dorsal Hippocampus,primary tissue,,,perturbation,luna,,untrained,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3738,32285,counts,pixel,4.003989241547924,platform_constant,True,H&E,4.003989241547924,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38260257,,GSM8565627,,,train,hesrt,samples/GSE279273/GSM8565627,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.5, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation @@ -5253,7 +5253,7 @@ GSM9460459,GSE280376,GSE280376,Spatiotemporal dynamics of the cardioimmune niche GSM9460460,GSE280376,GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002084,heart left ventricle,heart left ventricles,primary tissue,,,perturbation,luna,,Cryoablation,not stated,luna,not stated,,unknown,,,,FFPE,formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47536,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999814936667215,VERIFIED,PARTIAL,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,zero_count_observations,VERIFIED,PASS,,,41184578,,GSM9460460,,,train,sda-all,samples/GSE280376/GSM9460460,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9460461,GSE280376,GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002084,heart left ventricle,heart left ventricles,primary tissue,,,perturbation,luna,,Cryoablation,not stated,luna,not stated,,unknown,,,,FFPE,formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38903,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965668772315,VERIFIED,PARTIAL,FAILED,,zero_count_observations,VERIFIED,PASS,,,41184578,,GSM9460461,,,train,sda-all,samples/GSE280376/GSM9460461,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9460462,GSE280376,GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002084,heart left ventricle,heart left ventricles,primary tissue,,,disease,luna,,Cryoablation,not stated,luna,not stated,,unknown,,,,FFPE,formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46213,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000235682300259,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,41184578,,GSM9460462,,,train,sda-all,samples/GSE280376/GSM9460462,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9460463,GSE280376,GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002084,heart left ventricle,heart left ventricles,primary tissue,,,perturbation,luna,,Cryoablation,not stated,luna,not stated,,unknown,,,,FFPE,formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,61437,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999808553251649,VERIFIED,PARTIAL,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41184578,,GSM9460463,,,train,sda-all,samples/GSE280376/GSM9460463,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9460463,GSE280376,GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0002084,heart left ventricle,heart left ventricles,primary tissue,,,perturbation,luna,,Cryoablation,not stated,luna,not stated,,unknown,,,,FFPE,formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,61437,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998085532516495,VERIFIED,PARTIAL,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41184578,,GSM9460463,,,train,sda-all,samples/GSE280376/GSM9460463,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8598169,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,38.99,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69884,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000098052032945,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598169,,,train,sda-all,samples/GSE280460/GSM8598169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8598170,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,38.99,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,70592,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999923717361929,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598170,,,train,sda-all,samples/GSE280460/GSM8598170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8598171,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,37.33333,female,Female,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,74669,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000010904174117,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598171,,,train,sda-all,samples/GSE280460/GSM8598171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5264,7 +5264,7 @@ GSM8598175,GSE280460,GSE280460,Spatially-resolved molecular sex differences at s GSM8598176,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,31.54,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52813,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500005995465248,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598176,,,train,sda-all,samples/GSE280460/GSM8598176,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8598177,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,27.34839,female,Female,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102252,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000081677992682,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598177,,,train,sda-all,samples/GSE280460/GSM8598177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8598178,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32.67,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,97498,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961880282304,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598178,,,train,sda-all,samples/GSE280460/GSM8598178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8598179,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32.67,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,72990,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989109600976,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598179,,,train,sda-all,samples/GSE280460/GSM8598179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8598179,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32.67,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,72990,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999891096009763,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598179,,,train,sda-all,samples/GSE280460/GSM8598179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8598180,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,28.19439,female,Female,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,62834,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845450049456,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598180,,,train,sda-all,samples/GSE280460/GSM8598180,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8598181,GSE280460,GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,28.19439,female,Female,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55902,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965668772315,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8598181,,,train,sda-all,samples/GSE280460/GSM8598181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8599602,GSE280515,GSE280515,Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,PBS,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1790,32285,counts,pixel,4.501372546294116,platform_constant,True,H&E,4.501372546294116,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39862865,,GSM8599602,,,train,hesrt,samples/GSE280515/GSM8599602,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -5300,7 +5300,7 @@ GSM8605246,GSE280737,GSE280737,Functional Integration of Autologous Tissue-Engin GSM8605279,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,metastasis,MONDO:0005105;MONDO:0024880,melanoma;metastatic malignant neoplasm,disease,luna,,humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,163281,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092661230541,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39831781,,GSM8605279,,,train,sda-all,samples/GSE280741/GSM8605279,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.38, ""disease_status"": 0.28, ""uberon"": 0.97, ""life_stage"": 1.0}",sample_kind;disease_status,feature_species_differs;low_confidence_annotation GSM8605280,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,non-humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,121496,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000086278299282,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,39831781,,GSM8605280,,,train,sda-all,samples/GSE280741/GSM8605280,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.53, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,feature_species_differs;low_confidence_annotation GSM8605281,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,metastasis,MONDO:1060297;MONDO:0005105,metastatic malignant neoplasm in the liver;melanoma,disease,luna,,humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,154482,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999919417967491,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39831781,,GSM8605281,,,train,sda-all,samples/GSE280741/GSM8605281,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.73, ""disease_status"": 0.5700000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,feature_species_differs;low_confidence_annotation -GSM8605282,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,non-humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,189840,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999902190923317,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,39831781,,GSM8605282,,,train,sda-all,samples/GSE280741/GSM8605282,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.81, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",,feature_species_differs +GSM8605282,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,non-humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,189840,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999021909233177,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,39831781,,GSM8605282,,,train,sda-all,samples/GSE280741/GSM8605282,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.81, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",,feature_species_differs GSM8605283,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,not stated,luna,,humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,315017,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000074870991522,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39831781,,GSM8605283,,,train,sda-all,samples/GSE280741/GSM8605283,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 0.8, ""disease_status"": 0.24, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,feature_species_differs;low_confidence_annotation GSM8605284,GSE280741,GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,,non-humanized,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,117935,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000085320072156,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,39831781,,GSM8605284,,,train,sda-all,samples/GSE280741/GSM8605284,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.97, ""disease_status"": 0.67, ""uberon"": 0.98, ""life_stage"": 1.0}",,feature_species_differs GSM8607200,GSE280895,GSE280895,Tissue-resident memory CD8 T Cell Diversity is Spatiotemporally Imprinted,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0002108,small intestine,Small Intestine,primary tissue,MONDO:0005550,infectious disease,disease,luna,,infection with LCMV,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,451265,541,counts,um,1.0,verified,False,,,ABSENT,ABSENT,FAILED,,,VERIFIED,PASS,,,39843748,,GSM8607200,,,test,sda-all,samples/GSE280895/GSM8607200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -5328,12 +5328,12 @@ GSM8608417,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated B GSM8608418,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,5.130743545277269,platform_constant,True,H&E,5.130743545277269,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608418,,,train,hesrt,samples/GSE280990/GSM8608418,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8608419,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3127,18085,counts,pixel,6.59926078646137,platform_constant,True,H&E,6.59926078646137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608419,,,train,hesrt,samples/GSE280990/GSM8608419,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8608420,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000958,medulla of organ,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1958,17943,counts,pixel,3.9249862496150274,platform_constant,True,H&E,3.9249862496150274,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608420,,,train,hesrt,samples/GSE280990/GSM8608420,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8608421,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000958,medulla of organ,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2712,17943,counts,pixel,3.911702309455914,platform_constant,True,H&E,3.911702309455914,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608421,,,train,hesrt,samples/GSE280990/GSM8608421,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.38, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8608421,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000958,medulla of organ,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2712,17943,counts,pixel,3.9117023094559134,platform_constant,True,H&E,3.9117023094559134,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608421,,,train,hesrt,samples/GSE280990/GSM8608421,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.38, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8608422,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002298,brainstem,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3171,18085,counts,pixel,5.130597207322755,platform_constant,True,H&E,5.130597207322755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608422,,,train,hesrt,samples/GSE280990/GSM8608422,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8608423,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002240,spinal cord,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3423,18085,counts,pixel,5.538935407241965,platform_constant,True,H&E,5.538935407241965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608423,,,train,hesrt,samples/GSE280990/GSM8608423,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM8608424,GSE280990,GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002240,spinal cord,DIPG tumor-infiltrated brainstem,tumour tissue,MONDO:0006033,diffuse intrinsic pontine glioma,disease,luna,diffuse intrinsic pontine glioma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2744,18085,counts,pixel,5.16136529592397,platform_constant,True,H&E,5.16136529592397,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39972389,,GSM8608424,,,train,hesrt,samples/GSE280990/GSM8608424,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM8610676,GSE281086,GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1650,32286,counts,pixel,4.198575707421534,platform_constant,True,H&E,4.198575707421534,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40627455,,GSM8610676,,,train,hesrt,samples/GSE281086/GSM8610676,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8610677,GSE281086,GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1752,32286,counts,pixel,4.32526826917784,platform_constant,True,H&E,4.32526826917784,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40627455,,GSM8610677,,,train,hesrt,samples/GSE281086/GSM8610677,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.67, ""life_stage"": 1.0}",, +GSM8610677,GSE281086,GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1752,32286,counts,pixel,4.3252682691778395,platform_constant,True,H&E,4.3252682691778395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40627455,,GSM8610677,,,train,hesrt,samples/GSE281086/GSM8610677,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.67, ""life_stage"": 1.0}",, GSM8610678,GSE281086,GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1556,32286,counts,pixel,4.327040201438236,platform_constant,True,H&E,4.327040201438236,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40627455,,GSM8610678,,,train,hesrt,samples/GSE281086/GSM8610678,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8610679,GSE281086,GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1462,32286,counts,pixel,4.3208384592939,platform_constant,True,H&E,4.3208384592939,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40627455,,GSM8610679,,,train,hesrt,samples/GSE281086/GSM8610679,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.74, ""life_stage"": 1.0}",, GSM8616489,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 42 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,88480,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000267225785232,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616489,,,val,sda-all,samples/GSE281265/GSM8616489,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.98}",, @@ -5345,11 +5345,11 @@ GSM8616494,GSE281265,GSE281265,A specific gene expression program underlies anti GSM8616495,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 42 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,89614,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041118421052,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616495,,,val,sda-all,samples/GSE281265/GSM8616495,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8616496,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 42 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,99372,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041118421052,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616496,,,val,sda-all,samples/GSE281265/GSM8616496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 0.89}",disease_status,low_confidence_annotation GSM8616497,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 21 and 42 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8954,504,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616497,,,val,sda-all,samples/GSE281265/GSM8616497,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 0.87}",, -GSM8616498,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 21 and 42 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,91045,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999591725639629,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616498,,,val,sda-all,samples/GSE281265/GSM8616498,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8616498,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 21 and 42 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,91045,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49995917256396294,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616498,,,val,sda-all,samples/GSE281265/GSM8616498,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8616499,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 21 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,149417,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999671214861088,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616499,,,val,sda-all,samples/GSE281265/GSM8616499,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8616500,GSE281265,GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lymph node,luna,UBERON:0000029,lymph node,lymph node,primary tissue,,,perturbation,luna,,Immunized 21 days prior to harvest,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52971,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000408719346049,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40998762,,GSM8616500,,,val,sda-all,samples/GSE281265/GSM8616500,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8651954,GSE281288,GSE281288,NFE2-driven neutrophil polarization promotes pancreatic cancer liver metastasis progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0009831;MONDO:0024880,malignant pancreatic neoplasm;metastatic malignant neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3717,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8307021331391615,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39827463,,GSM8651954,,,train,sda-all,samples/GSE281288/GSM8651954,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8651955,GSE281288,GSE281288,NFE2-driven neutrophil polarization promotes pancreatic cancer liver metastasis progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2806,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.437409516179234,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39827463,,GSM8651955,,,train,sda-all,samples/GSE281288/GSM8651955,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8651955,GSE281288,GSE281288,NFE2-driven neutrophil polarization promotes pancreatic cancer liver metastasis progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,metastasis,MONDO:1060297;MONDO:0009831,metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2806,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.4374095161792346,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,39827463,,GSM8651955,,,train,sda-all,samples/GSE281288/GSM8651955,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8618646,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1327,32738,counts,um,1.0,verified,True,H&E,4.576557648643502,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618646,,,test,sda-all,samples/GSE281317/GSM8618646,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8618647,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,907,32738,counts,um,1.0,verified,True,H&E-like (heuristic),4.661522166134551,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618647,,,test,sda-all,samples/GSE281317/GSM8618647,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8618648,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1401,32738,counts,um,1.0,verified,True,H&E-like (heuristic),4.672414014584598,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618648,,,test,sda-all,samples/GSE281317/GSM8618648,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.77}",, @@ -5358,7 +5358,7 @@ GSM8618650,GSE281317,GSE281317,single-cell multiomics data for the developing hu GSM8618651,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1684,36601,counts,um,1.0,verified,True,H&E,6.846725050419788,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618651,,,test,sda-all,samples/GSE281317/GSM8618651,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8618652,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,907,36601,counts,um,1.0,verified,True,H&E,6.782591530401471,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618652,,,test,sda-all,samples/GSE281317/GSM8618652,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8618653,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,152,36601,counts,um,1.0,verified,True,undetermined,13.117375656409834,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618653,,,test,sda-all,samples/GSE281317/GSM8618653,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8618654,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1133,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.876693338647976,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618654,,,test,sda-all,samples/GSE281317/GSM8618654,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8618654,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1133,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.8766933386479763,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618654,,,test,sda-all,samples/GSE281317/GSM8618654,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8618655,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,771,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.7658785039160425,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618655,,,test,sda-all,samples/GSE281317/GSM8618655,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8618656,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,436,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.806928994368646,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618656,,,test,sda-all,samples/GSE281317/GSM8618656,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8618657,GSE281317,GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001273,ilium,ilium,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,150,36601,counts,um,1.0,verified,True,H&E,4.090698532680941,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40866708,,GSM8618657,,,test,sda-all,samples/GSE281317/GSM8618657,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.97}",, @@ -5391,25 +5391,25 @@ GSM8621906,GSE281489+GSE281492,GSE281489,In situ single-cell profiling of lung m GSM8627601,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,normal adjacent liver tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1714,36601,counts,pixel,4.015060633494453,platform_constant,True,H&E,4.015060633494453,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627601,,,val,hesrt,samples/GSE281759/GSM8627601,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.46, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM8627602,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1762,36601,counts,pixel,3.8760854559127633,platform_constant,True,H&E,3.8760854559127633,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627602,,,val,hesrt,samples/GSE281759/GSM8627602,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8627603,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1565,36601,counts,pixel,4.015060633494461,platform_constant,True,H&E,4.015060633494461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627603,,,val,hesrt,samples/GSE281759/GSM8627603,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8627604,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1329,36601,counts,pixel,3.8760854559127695,platform_constant,True,H&E,3.8760854559127695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627604,,,val,hesrt,samples/GSE281759/GSM8627604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8627604,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1329,36601,counts,pixel,3.8760854559127704,platform_constant,True,H&E,3.8760854559127704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627604,,,val,hesrt,samples/GSE281759/GSM8627604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8627605,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2356,36601,counts,pixel,4.015060633494461,platform_constant,True,H&E,4.015060633494461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627605,,,val,hesrt,samples/GSE281759/GSM8627605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8627606,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1936,36601,counts,pixel,3.8760854559127695,platform_constant,True,H&E,3.8760854559127695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627606,,,val,hesrt,samples/GSE281759/GSM8627606,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8627607,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1187,36601,counts,pixel,3.8760854559127695,platform_constant,True,H&E,3.8760854559127695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627607,,,val,hesrt,samples/GSE281759/GSM8627607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8627608,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1265,36601,counts,pixel,3.8760854559127695,platform_constant,True,H&E,3.8760854559127695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627608,,,val,hesrt,samples/GSE281759/GSM8627608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8627606,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:A009,A009,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1936,36601,counts,pixel,3.8760854559127704,platform_constant,True,H&E,3.8760854559127704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627606,,,val,hesrt,samples/GSE281759/GSM8627606,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8627607,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1187,36601,counts,pixel,3.8760854559127704,platform_constant,True,H&E,3.8760854559127704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627607,,,val,hesrt,samples/GSE281759/GSM8627607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8627608,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1265,36601,counts,pixel,3.8760854559127704,platform_constant,True,H&E,3.8760854559127704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627608,,,val,hesrt,samples/GSE281759/GSM8627608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8627609,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1485,36601,counts,pixel,4.015060633494471,platform_constant,True,H&E,4.015060633494471,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627609,,,val,hesrt,samples/GSE281759/GSM8627609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8627610,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1898,36601,counts,pixel,4.015060633494461,platform_constant,True,H&E,4.015060633494461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627610,,,val,hesrt,samples/GSE281759/GSM8627610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8627611,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1490,36601,counts,pixel,3.8760854559127695,platform_constant,True,H&E,3.8760854559127695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627611,,,val,hesrt,samples/GSE281759/GSM8627611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8627612,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:C004,C004,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1489,36601,counts,pixel,3.8760854559127615,platform_constant,True,H&E,3.8760854559127615,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627612,,,val,hesrt,samples/GSE281759/GSM8627612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8627611,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:B0013,B0013,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1490,36601,counts,pixel,3.8760854559127704,platform_constant,True,H&E,3.8760854559127704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627611,,,val,hesrt,samples/GSE281759/GSM8627611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8627612,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:C004,C004,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1489,36601,counts,pixel,3.8760854559127624,platform_constant,True,H&E,3.8760854559127624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627612,,,val,hesrt,samples/GSE281759/GSM8627612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8627613,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,female,female,GSE281759:C004,C004,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,937,36601,counts,pixel,3.9828311742323046,platform_constant,True,H&E,3.9828311742323046,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627613,,,val,hesrt,samples/GSE281759/GSM8627613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8627614,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:C008,C008,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2276,36601,counts,pixel,3.8760854559127615,platform_constant,True,H&E,3.8760854559127615,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627614,,,val,hesrt,samples/GSE281759/GSM8627614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8627614,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:C008,C008,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2276,36601,counts,pixel,3.8760854559127624,platform_constant,True,H&E,3.8760854559127624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627614,,,val,hesrt,samples/GSE281759/GSM8627614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8627615,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:C008,C008,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1310,36601,counts,pixel,3.876085455912768,platform_constant,True,H&E,3.876085455912768,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627615,,,val,hesrt,samples/GSE281759/GSM8627615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8627616,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:C008,C008,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1494,36601,counts,pixel,4.015060633494461,platform_constant,True,H&E,4.015060633494461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627616,,,val,hesrt,samples/GSE281759/GSM8627616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8627617,GSE281759,GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,hepatocellular carcinoma tumor tissue,not stated,luna,not stated,,male,male,GSE281759:C008,C008,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1731,36601,counts,pixel,3.8760854559127633,platform_constant,True,H&E,3.8760854559127633,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41950768,,GSM8627617,,,val,hesrt,samples/GSE281759/GSM8627617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8630048,GSE281796,GSE281796,A blueprint for local and distal glioblastoma invasion programs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,invasion,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1986,68886,counts,pixel,4.4197672886271455,platform_constant,True,H&E,4.4197672886271455,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41844611,,GSM8630048,,,test,hesrt,samples/GSE281796/GSM8630048,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.7000000000000001, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.9500000000000001}",, GSM8630049,GSE281796,GSE281796,A blueprint for local and distal glioblastoma invasion programs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2330,68886,counts,pixel,4.420349133107466,platform_constant,True,H&E,4.420349133107466,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41844611,,GSM8630049,,,test,hesrt,samples/GSE281796/GSM8630049,sda-tissue-disease-2.3,"{""organ"": 0.75, ""sample_kind"": 0.56, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM8633891,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-negative, PT2",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1187,36601,counts,pixel,3.986346259635048,platform_constant,True,H&E,3.986346259635048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633891,,,train,hesrt,samples/GSE281978/GSM8633891,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.67, ""life_stage"": 0.99}",, +GSM8633891,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-negative, PT2",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1187,36601,counts,pixel,3.9863462596350483,platform_constant,True,H&E,3.9863462596350483,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633891,,,train,hesrt,samples/GSE281978/GSM8633891,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.67, ""life_stage"": 0.99}",, GSM8633892,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-negative, LNMT2",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1579,36601,counts,pixel,3.892751871846451,platform_constant,True,H&E,3.892751871846451,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633892,,,train,hesrt,samples/GSE281978/GSM8633892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.84, ""life_stage"": 1.0}",, -GSM8633893,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-positive, PT3",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1359,36601,counts,pixel,3.856036002083416,platform_constant,True,H&E,3.856036002083416,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633893,,,train,hesrt,samples/GSE281978/GSM8633893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.78, ""life_stage"": 0.99}",, +GSM8633893,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-positive, PT3",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1359,36601,counts,pixel,3.8560360020834157,platform_constant,True,H&E,3.8560360020834157,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633893,,,train,hesrt,samples/GSE281978/GSM8633893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.78, ""life_stage"": 0.99}",, GSM8633894,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-positive, LNMT3",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1908,36601,counts,pixel,3.8675632995753024,platform_constant,True,H&E,3.8675632995753024,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633894,,,train,hesrt,samples/GSE281978/GSM8633894,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 1.0, ""uberon"": 0.75, ""life_stage"": 1.0}",, GSM8633895,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-negative, PT1",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1195,36601,counts,pixel,3.869164456483085,platform_constant,True,H&E,3.869164456483085,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633895,,,train,hesrt,samples/GSE281978/GSM8633895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.68, ""life_stage"": 0.99}",, GSM8633896,GSE281978,GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,HNSCC primary tumor,tumour tissue,MONDO:0021310;MONDO:0010150,malignant tumor of neck;head and neck squamous cell carcinoma,disease,luna,,"HPV-negative, LNMT1",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1439,36601,counts,pixel,3.851873151854416,platform_constant,True,H&E,3.851873151854416,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,38235919,10.1002/jmv.29386,GSM8633896,,,train,hesrt,samples/GSE281978/GSM8633896,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.71, ""life_stage"": 1.0}",, @@ -5420,19 +5420,19 @@ GSM8634193,GSE282002,GSE282002,Cell competition drives bronchiolization and pulm GSM8634194,GSE282002,GSE282002,Cell competition drives bronchiolization and pulmonary fibrosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0002771,pulmonary fibrosis,disease,luna,,Bleomycin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3735,19465,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.042369069617337,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,clearly fluorescence; the fluorescence type should be stated,39639058,,GSM8634194,,,val,sda-all,samples/GSE282002/GSM8634194,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8634986,GSE282057,GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skeletal muscle,luna,UBERON:0000376,hindlimb stylopod,ASPS thigh primary tumor,tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,76899,18086,counts,um,1.0,verified,True,H&E-like (heuristic),3.73656463214597,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8634986,,,train,sda-all,samples/GSE282057/GSM8634986,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8634987,GSE282057,GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,ASPS lung needle biopsy,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,1700,18086,counts,um,1.0,verified,True,H&E-like (heuristic),0.5000146493582549,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8634987,,,train,sda-all,samples/GSE282057/GSM8634987,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8634988,GSE282057,GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,ASPS lung needle biopsy,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,3048,18086,counts,um,1.0,verified,True,H&E-like (heuristic),0.4999638739328748,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8634988,,,train,sda-all,samples/GSE282057/GSM8634988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8634988,GSE282057,GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,ASPS lung needle biopsy,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,3048,18086,counts,um,1.0,verified,True,H&E-like (heuristic),0.49996387393287484,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8634988,,,train,sda-all,samples/GSE282057/GSM8634988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8634989,GSE282057,GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Intramuscular tumor of a PDX-derived ASPS cell line,xenograft,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,23134,18086,counts,um,1.0,verified,True,H&E-like (heuristic),0.8554409143218548,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8634989,,,train,sda-all,samples/GSE282057/GSM8634989,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",,feature_species_differs GSM8635038,GSE282059,GSE282059,"Nanostring CosMx 6,000-plex RNA profiling of human kidney nephrectomy specimens",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,"Ureteral obstruction (UUO, n=5) and healthy kidneys (n=2)",primary tissue,MONDO:0003329,ureteral obstruction,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,523855,5749,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,40399382,,GSM8635038,,,train,sda-all,samples/GSE282059/GSM8635038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.65, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM8636483,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_290g,xenium-1.6.0.8,cell,434666,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999930964653903,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM8636483,,,val,sda-all,samples/GSE282123/GSM8636483,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8636484,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_290g,xenium-1.6.0.8,cell,424230,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000065413632201,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM8636484,,,val,sda-all,samples/GSE282123/GSM8636484,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.9, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9282953,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_112g,xenium-3.0.0.8,cell,372549,10870,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282953,,,val,sda-all,samples/GSE282123/GSM9282953,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9282954,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_290g,xenium-2.0.0.10,cell,424697,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499988174077578,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282954,,,val,sda-all,samples/GSE282123/GSM9282954,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9282955,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005292,colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_290g,xenium-2.0.0.10,cell,454968,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944787985865,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282955,,,val,sda-all,samples/GSE282123/GSM9282955,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9282954,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_290g,xenium-2.0.0.10,cell,424697,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998817407757806,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282954,,,val,sda-all,samples/GSE282123/GSM9282954,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9282955,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005292,colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hColon_290g,xenium-2.0.0.10,cell,454968,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999447879858655,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282955,,,val,sda-all,samples/GSE282123/GSM9282955,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9282956,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-3.3.0.1,cell,729135,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999884287454324,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282956,,,val,sda-all,samples/GSE282123/GSM9282956,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.23, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9282957,GSE282123,GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-3.3.0.1,cell,744823,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000016346279587,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42262875,,GSM9282957,,,val,sda-all,samples/GSE282123/GSM9282957,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8636485,GSE282124,GSE282124,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Merscope]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,colon,luna,UBERON:0001155,colon,FFPE mucosal biopsies,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,Merscope,,,cell,124938,315,counts,um,1.0,verified,False,,,,,,,zero_count_observations,VERIFIED,,,,42262875,,GSM8636485,,,train,sda-all,samples/GSE282124/GSM8636485,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 0.44, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM8637961,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP23,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3499,32286,counts,pixel,7.260528444724705,platform_constant,True,H&E,7.260528444724705,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637961,,,train,hesrt,samples/GSE282203/GSM8637961,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8637962,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP23,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3697,32286,counts,pixel,7.680000491520007,platform_constant,True,H&E,7.680000491520007,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637962,,,train,hesrt,samples/GSE282203/GSM8637962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8637962,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP23,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3697,32286,counts,pixel,7.6800004915200075,platform_constant,True,H&E,7.6800004915200075,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637962,,,train,hesrt,samples/GSE282203/GSM8637962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8637963,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP23,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3584,32286,counts,pixel,6.209523936198103,platform_constant,True,H&E,6.209523936198103,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637963,,,train,hesrt,samples/GSE282203/GSM8637963,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8637964,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP23,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3646,32286,counts,pixel,7.2605284447247005,platform_constant,True,H&E,7.2605284447247005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637964,,,train,hesrt,samples/GSE282203/GSM8637964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8637965,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0004975,Alzheimer disease,disease,luna,,APP23,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3552,32286,counts,pixel,6.209523936198103,platform_constant,True,H&E,6.209523936198103,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637965,,,train,hesrt,samples/GSE282203/GSM8637965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5469,7 +5469,7 @@ GSM8637995,GSE282203,GSE282203,Spatial transcriptomics identifies regional disru GSM8637996,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4221,32286,counts,pixel,7.680000491520024,platform_constant,True,H&E,7.680000491520024,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637996,,,train,hesrt,samples/GSE282203/GSM8637996,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8637997,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3344,32286,counts,pixel,7.260528444724758,platform_constant,True,H&E,7.260528444724758,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637997,,,train,hesrt,samples/GSE282203/GSM8637997,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8637998,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3740,32286,counts,pixel,6.520000133008002,platform_constant,True,H&E,6.520000133008002,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637998,,,train,hesrt,samples/GSE282203/GSM8637998,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8637999,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3431,32286,counts,pixel,7.680000491520007,platform_constant,True,H&E,7.680000491520007,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637999,,,train,hesrt,samples/GSE282203/GSM8637999,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8637999,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3431,32286,counts,pixel,7.6800004915200075,platform_constant,True,H&E,7.6800004915200075,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8637999,,,train,hesrt,samples/GSE282203/GSM8637999,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8638000,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3403,32286,counts,pixel,7.260528444724758,platform_constant,True,H&E,7.260528444724758,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8638000,,,train,hesrt,samples/GSE282203/GSM8638000,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8638001,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3735,32286,counts,pixel,6.520000133008002,platform_constant,True,H&E,6.520000133008002,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8638001,,,train,hesrt,samples/GSE282203/GSM8638001,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8638002,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,14 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3516,32286,counts,pixel,7.536842346442062,platform_constant,True,H&E,7.536842346442062,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8638002,,,train,hesrt,samples/GSE282203/GSM8638002,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5496,111 +5496,111 @@ GSM8638022,GSE282203,GSE282203,Spatial transcriptomics identifies regional disru GSM8638023,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3725,32286,counts,pixel,19.200001228799938,platform_constant,True,H&E,19.200001228799938,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8638023,,,train,hesrt,samples/GSE282203/GSM8638023,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8638024,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3657,32286,counts,pixel,19.200001228799938,platform_constant,True,H&E,19.200001228799938,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8638024,,,train,hesrt,samples/GSE282203/GSM8638024,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8638025,GSE282203,GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,WT,adult,age rule: age with unit,adult,7 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3775,32286,counts,pixel,19.200001228799938,platform_constant,True,H&E,19.200001228799938,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41659563,,GSM8638025,,,train,hesrt,samples/GSE282203/GSM8638025,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641003,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3150,19144,counts,pixel,3.988683011081388,platform_constant,True,H&E,3.988683011081388,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641003,,,train,hesrt,samples/GSE282302/GSM8641003,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641004,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3826,19144,counts,pixel,4.020328180773349,platform_constant,True,H&E,4.020328180773349,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641004,,,train,hesrt,samples/GSE282302/GSM8641004,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641005,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3536,19144,counts,pixel,4.116695863365288,platform_constant,True,H&E,4.116695863365288,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641005,,,train,hesrt,samples/GSE282302/GSM8641005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM8641006,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3664,19144,counts,pixel,4.05640377866306,platform_constant,True,H&E,4.05640377866306,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641006,,,train,hesrt,samples/GSE282302/GSM8641006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641007,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4440,19144,counts,pixel,3.9676706393586105,platform_constant,True,H&E,3.9676706393586105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641007,,,train,hesrt,samples/GSE282302/GSM8641007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641008,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3706,19144,counts,pixel,3.988683011081379,platform_constant,True,H&E,3.988683011081379,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641008,,,train,hesrt,samples/GSE282302/GSM8641008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641009,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4105,19144,counts,pixel,4.025898047555061,platform_constant,True,H&E,4.025898047555061,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641009,,,train,hesrt,samples/GSE282302/GSM8641009,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641010,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4647,19144,counts,pixel,4.057669575962961,platform_constant,True,H&E,4.057669575962961,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641010,,,train,hesrt,samples/GSE282302/GSM8641010,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641011,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3824,19144,counts,pixel,3.999189169151017,platform_constant,True,H&E,3.999189169151017,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641011,,,train,hesrt,samples/GSE282302/GSM8641011,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM8641012,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4261,19144,counts,pixel,3.978215142121785,platform_constant,True,H&E,3.978215142121785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641012,,,train,hesrt,samples/GSE282302/GSM8641012,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641013,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3343,19144,counts,pixel,3.988683011081352,platform_constant,True,H&E,3.988683011081352,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641013,,,train,hesrt,samples/GSE282302/GSM8641013,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641014,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,1861,19144,counts,pixel,3.9993546036853536,platform_constant,True,H&E,3.9993546036853536,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641014,,,train,hesrt,samples/GSE282302/GSM8641014,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641015,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2302,19144,counts,pixel,4.0203668311475305,platform_constant,True,H&E,4.0203668311475305,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641015,,,train,hesrt,samples/GSE282302/GSM8641015,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641016,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2141,19144,counts,pixel,3.9360634796841993,platform_constant,True,H&E,3.9360634796841993,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641016,,,train,hesrt,samples/GSE282302/GSM8641016,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641017,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2979,19144,counts,pixel,4.035429926823896,platform_constant,True,H&E,4.035429926823896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641017,,,train,hesrt,samples/GSE282302/GSM8641017,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641018,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3119,19144,counts,pixel,3.98872135722725,platform_constant,True,H&E,3.98872135722725,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641018,,,train,hesrt,samples/GSE282302/GSM8641018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641019,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3249,19144,counts,pixel,3.999227616300329,platform_constant,True,H&E,3.999227616300329,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641019,,,train,hesrt,samples/GSE282302/GSM8641019,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641020,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3923,19144,counts,pixel,4.066909991022587,platform_constant,True,H&E,4.066909991022587,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641020,,,train,hesrt,samples/GSE282302/GSM8641020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641021,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3743,19144,counts,pixel,4.009860754768263,platform_constant,True,H&E,4.009860754768263,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641021,,,train,hesrt,samples/GSE282302/GSM8641021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641022,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3689,19144,counts,pixel,3.978215142121785,platform_constant,True,H&E,3.978215142121785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641022,,,train,hesrt,samples/GSE282302/GSM8641022,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641023,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3671,19144,counts,pixel,4.057708585327462,platform_constant,True,H&E,4.057708585327462,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641023,,,train,hesrt,samples/GSE282302/GSM8641023,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641024,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3477,19144,counts,pixel,3.9939997523883695,platform_constant,True,H&E,3.9939997523883695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641024,,,train,hesrt,samples/GSE282302/GSM8641024,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641025,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2387,19144,counts,pixel,4.086816343251943,platform_constant,True,H&E,4.086816343251943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641025,,,train,hesrt,samples/GSE282302/GSM8641025,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641026,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3901,19144,counts,pixel,4.186310399854576,platform_constant,True,H&E,4.186310399854576,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641026,,,train,hesrt,samples/GSE282302/GSM8641026,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641027,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3760,19144,counts,pixel,4.002726878226908,platform_constant,True,H&E,4.002726878226908,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641027,,,train,hesrt,samples/GSE282302/GSM8641027,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641028,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4086,19144,counts,pixel,4.11156380928372,platform_constant,True,H&E,4.11156380928372,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641028,,,train,hesrt,samples/GSE282302/GSM8641028,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641029,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4305,19144,counts,pixel,3.9451518927521656,platform_constant,True,H&E,3.9451518927521656,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641029,,,train,hesrt,samples/GSE282302/GSM8641029,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641030,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2572,19144,counts,pixel,4.1072707953331165,platform_constant,True,H&E,4.1072707953331165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641030,,,train,hesrt,samples/GSE282302/GSM8641030,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8641031,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,1854,19144,counts,pixel,4.1389413274549645,platform_constant,True,H&E,4.1389413274549645,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641031,,,train,hesrt,samples/GSE282302/GSM8641031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641032,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3379,19144,counts,pixel,4.363580739679716,platform_constant,True,H&E,4.363580739679716,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641032,,,train,hesrt,samples/GSE282302/GSM8641032,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641033,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3100,19144,counts,pixel,4.120402033426829,platform_constant,True,H&E,4.120402033426829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641033,,,train,hesrt,samples/GSE282302/GSM8641033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641034,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2516,19144,counts,pixel,4.29892609639909,platform_constant,True,H&E,4.29892609639909,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641034,,,train,hesrt,samples/GSE282302/GSM8641034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641035,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2508,19144,counts,pixel,4.091866822735055,platform_constant,True,H&E,4.091866822735055,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641035,,,train,hesrt,samples/GSE282302/GSM8641035,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM8641036,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2255,19144,counts,pixel,4.16206802830189,platform_constant,True,H&E,4.16206802830189,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641036,,,train,hesrt,samples/GSE282302/GSM8641036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641037,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2243,19144,counts,pixel,3.98858545794071,platform_constant,True,H&E,3.98858545794071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641037,,,train,hesrt,samples/GSE282302/GSM8641037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641040,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3064,19144,counts,pixel,4.076968251989538,platform_constant,True,H&E,4.076968251989538,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641040,,,train,hesrt,samples/GSE282302/GSM8641040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641041,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3345,19144,counts,pixel,4.086816343251924,platform_constant,True,H&E,4.086816343251924,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641041,,,train,hesrt,samples/GSE282302/GSM8641041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641042,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3899,19144,counts,pixel,4.086816343251943,platform_constant,True,H&E,4.086816343251943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641042,,,train,hesrt,samples/GSE282302/GSM8641042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641044,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3419,19144,counts,pixel,4.534659850912342,platform_constant,True,H&E,4.534659850912342,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641044,,,train,hesrt,samples/GSE282302/GSM8641044,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641045,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3623,19144,counts,pixel,4.009544772666975,platform_constant,True,H&E,4.009544772666975,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641045,,,train,hesrt,samples/GSE282302/GSM8641045,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641046,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3733,19144,counts,pixel,3.991110508714546,platform_constant,True,H&E,3.991110508714546,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641046,,,train,hesrt,samples/GSE282302/GSM8641046,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8641047,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4210,19144,counts,pixel,3.979747326692424,platform_constant,True,H&E,3.979747326692424,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641047,,,train,hesrt,samples/GSE282302/GSM8641047,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641048,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4154,19144,counts,pixel,4.421660603335733,platform_constant,True,H&E,4.421660603335733,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641048,,,train,hesrt,samples/GSE282302/GSM8641048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641049,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2534,19144,counts,pixel,4.177724584352066,platform_constant,True,H&E,4.177724584352066,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641049,,,train,hesrt,samples/GSE282302/GSM8641049,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641050,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2487,19144,counts,pixel,3.936313232896295,platform_constant,True,H&E,3.936313232896295,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641050,,,train,hesrt,samples/GSE282302/GSM8641050,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641051,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2776,19144,counts,pixel,4.033534224628903,platform_constant,True,H&E,4.033534224628903,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641051,,,train,hesrt,samples/GSE282302/GSM8641051,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641052,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2694,19144,counts,pixel,3.998181293867032,platform_constant,True,H&E,3.998181293867032,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641052,,,train,hesrt,samples/GSE282302/GSM8641052,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641053,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2364,19144,counts,pixel,3.979494577842634,platform_constant,True,H&E,3.979494577842634,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641053,,,train,hesrt,samples/GSE282302/GSM8641053,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8641054,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2395,19144,counts,pixel,3.962323271167784,platform_constant,True,H&E,3.962323271167784,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641054,,,train,hesrt,samples/GSE282302/GSM8641054,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641055,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2303,19144,counts,pixel,4.137878894925712,platform_constant,True,H&E,4.137878894925712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641055,,,train,hesrt,samples/GSE282302/GSM8641055,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8641056,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2247,19144,counts,pixel,4.148767234101986,platform_constant,True,H&E,4.148767234101986,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641056,,,train,hesrt,samples/GSE282302/GSM8641056,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8641057,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2346,19144,counts,pixel,4.03858458009644,platform_constant,True,H&E,4.03858458009644,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641057,,,train,hesrt,samples/GSE282302/GSM8641057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641058,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2375,19144,counts,pixel,3.924950183596106,platform_constant,True,H&E,3.924950183596106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641058,,,train,hesrt,samples/GSE282302/GSM8641058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641059,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4257,19144,counts,pixel,3.9621390268453593,platform_constant,True,H&E,3.9621390268453593,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641059,,,train,hesrt,samples/GSE282302/GSM8641059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641060,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3564,19144,counts,pixel,3.9263886251730096,platform_constant,True,H&E,3.9263886251730096,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641060,,,train,hesrt,samples/GSE282302/GSM8641060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM8641061,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3228,19144,counts,pixel,3.936316235184092,platform_constant,True,H&E,3.936316235184092,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641061,,,train,hesrt,samples/GSE282302/GSM8641061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM8641062,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3568,19144,counts,pixel,3.9878350725232745,platform_constant,True,H&E,3.9878350725232745,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641062,,,train,hesrt,samples/GSE282302/GSM8641062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641063,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4431,19144,counts,pixel,3.9935315978398167,platform_constant,True,H&E,3.9935315978398167,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641063,,,train,hesrt,samples/GSE282302/GSM8641063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, -GSM8641064,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4300,19144,counts,pixel,3.96213902684536,platform_constant,True,H&E,3.96213902684536,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641064,,,train,hesrt,samples/GSE282302/GSM8641064,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, -GSM8641065,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4270,19144,counts,pixel,3.983151964424773,platform_constant,True,H&E,3.983151964424773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641065,,,train,hesrt,samples/GSE282302/GSM8641065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641066,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3775,19144,counts,pixel,3.983025126561429,platform_constant,True,H&E,3.983025126561429,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641066,,,train,hesrt,samples/GSE282302/GSM8641066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641067,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3337,19144,counts,pixel,3.951632793775664,platform_constant,True,H&E,3.951632793775664,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641067,,,train,hesrt,samples/GSE282302/GSM8641067,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641068,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4145,19144,counts,pixel,4.143784132125744,platform_constant,True,H&E,4.143784132125744,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641068,,,train,hesrt,samples/GSE282302/GSM8641068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641069,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3240,19144,counts,pixel,3.993658223745644,platform_constant,True,H&E,3.993658223745644,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641069,,,train,hesrt,samples/GSE282302/GSM8641069,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641070,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3295,19144,counts,pixel,4.068467810807136,platform_constant,True,H&E,4.068467810807136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641070,,,train,hesrt,samples/GSE282302/GSM8641070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641071,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3498,19144,counts,pixel,4.014544272414712,platform_constant,True,H&E,4.014544272414712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641071,,,train,hesrt,samples/GSE282302/GSM8641071,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641072,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2590,19144,counts,pixel,4.043910920763264,platform_constant,True,H&E,4.043910920763264,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641072,,,train,hesrt,samples/GSE282302/GSM8641072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641073,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3477,19144,counts,pixel,3.993658223745626,platform_constant,True,H&E,3.993658223745626,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641073,,,train,hesrt,samples/GSE282302/GSM8641073,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641074,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2691,19144,counts,pixel,4.159733603386881,platform_constant,True,H&E,4.159733603386881,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641074,,,train,hesrt,samples/GSE282302/GSM8641074,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8641075,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2783,19144,counts,pixel,4.004164574345208,platform_constant,True,H&E,4.004164574345208,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641075,,,train,hesrt,samples/GSE282302/GSM8641075,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641076,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2470,19144,counts,pixel,4.004177406129048,platform_constant,True,H&E,4.004177406129048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641076,,,train,hesrt,samples/GSE282302/GSM8641076,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641077,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2559,19144,counts,pixel,4.014557137461431,platform_constant,True,H&E,4.014557137461431,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641077,,,train,hesrt,samples/GSE282302/GSM8641077,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, -GSM8641078,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2684,19144,counts,pixel,3.993544395549137,platform_constant,True,H&E,3.993544395549137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641078,,,train,hesrt,samples/GSE282302/GSM8641078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641079,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3089,19144,counts,pixel,4.061467020805752,platform_constant,True,H&E,4.061467020805752,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641079,,,train,hesrt,samples/GSE282302/GSM8641079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641080,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2672,19144,counts,pixel,4.061467020805734,platform_constant,True,H&E,4.061467020805734,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641080,,,train,hesrt,samples/GSE282302/GSM8641080,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641081,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3089,19144,counts,pixel,4.116656286918105,platform_constant,True,H&E,4.116656286918105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641081,,,train,hesrt,samples/GSE282302/GSM8641081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8641082,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3364,19144,counts,pixel,4.024758781142124,platform_constant,True,H&E,4.024758781142124,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641082,,,train,hesrt,samples/GSE282302/GSM8641082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641083,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3340,19144,counts,pixel,4.097708435801431,platform_constant,True,H&E,4.097708435801431,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641083,,,train,hesrt,samples/GSE282302/GSM8641083,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641084,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3177,19144,counts,pixel,3.981379598877977,platform_constant,True,H&E,3.981379598877977,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641084,,,train,hesrt,samples/GSE282302/GSM8641084,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641085,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3862,19144,counts,pixel,4.04593635481292,platform_constant,True,H&E,4.04593635481292,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641085,,,train,hesrt,samples/GSE282302/GSM8641085,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641086,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,1940,19144,counts,pixel,4.020113763774046,platform_constant,True,H&E,4.020113763774046,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641086,,,train,hesrt,samples/GSE282302/GSM8641086,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641087,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2927,19144,counts,pixel,3.993531597839808,platform_constant,True,H&E,3.993531597839808,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641087,,,train,hesrt,samples/GSE282302/GSM8641087,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641088,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4060,19144,counts,pixel,4.014544272414712,platform_constant,True,H&E,4.014544272414712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641088,,,train,hesrt,samples/GSE282302/GSM8641088,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 0.99}",, -GSM8641089,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2364,19144,counts,pixel,4.035429926823896,platform_constant,True,H&E,4.035429926823896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641089,,,train,hesrt,samples/GSE282302/GSM8641089,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641090,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3894,19144,counts,pixel,4.00441936691234,platform_constant,True,H&E,4.00441936691234,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641090,,,train,hesrt,samples/GSE282302/GSM8641090,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8641091,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3577,19144,counts,pixel,4.061506066677896,platform_constant,True,H&E,4.061506066677896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641091,,,train,hesrt,samples/GSE282302/GSM8641091,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM8641092,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3040,19144,counts,pixel,4.061506066677896,platform_constant,True,H&E,4.061506066677896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641092,,,train,hesrt,samples/GSE282302/GSM8641092,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, -GSM8641093,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3091,19144,counts,pixel,4.043277984841253,platform_constant,True,H&E,4.043277984841253,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641093,,,train,hesrt,samples/GSE282302/GSM8641093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641094,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3347,19144,counts,pixel,4.079986827282776,platform_constant,True,H&E,4.079986827282776,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641094,,,train,hesrt,samples/GSE282302/GSM8641094,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641095,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3509,19144,counts,pixel,4.095429830501896,platform_constant,True,H&E,4.095429830501896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641095,,,train,hesrt,samples/GSE282302/GSM8641095,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641096,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4216,19144,counts,pixel,4.063762678319425,platform_constant,True,H&E,4.063762678319425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641096,,,train,hesrt,samples/GSE282302/GSM8641096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641097,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3336,19144,counts,pixel,4.063277984338962,platform_constant,True,H&E,4.063277984338962,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641097,,,train,hesrt,samples/GSE282302/GSM8641097,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8641098,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2649,19144,counts,pixel,4.106439329901525,platform_constant,True,H&E,4.106439329901525,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641098,,,train,hesrt,samples/GSE282302/GSM8641098,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641099,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,2760,19144,counts,pixel,3.9993546036853727,platform_constant,True,H&E,3.9993546036853727,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641099,,,train,hesrt,samples/GSE282302/GSM8641099,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641100,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3147,19144,counts,pixel,4.05201226698438,platform_constant,True,H&E,4.05201226698438,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641100,,,train,hesrt,samples/GSE282302/GSM8641100,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641101,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3651,19144,counts,pixel,4.0203668311475305,platform_constant,True,H&E,4.0203668311475305,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641101,,,train,hesrt,samples/GSE282302/GSM8641101,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM8641102,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4152,19144,counts,pixel,3.935088197669137,platform_constant,True,H&E,3.935088197669137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641102,,,train,hesrt,samples/GSE282302/GSM8641102,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8641103,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3840,19144,counts,pixel,4.090856921359118,platform_constant,True,H&E,4.090856921359118,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641103,,,train,hesrt,samples/GSE282302/GSM8641103,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641104,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4561,19144,counts,pixel,4.060049271516082,platform_constant,True,H&E,4.060049271516082,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641104,,,train,hesrt,samples/GSE282302/GSM8641104,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8641105,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,4399,19144,counts,pixel,4.136816112781218,platform_constant,True,H&E,4.136816112781218,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641105,,,train,hesrt,samples/GSE282302/GSM8641105,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641106,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3094,19144,counts,pixel,4.144644158690165,platform_constant,True,H&E,4.144644158690165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641106,,,train,hesrt,samples/GSE282302/GSM8641106,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641107,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3571,19144,counts,pixel,4.330247698226404,platform_constant,True,H&E,4.330247698226404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641107,,,train,hesrt,samples/GSE282302/GSM8641107,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, -GSM8641108,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3996,19144,counts,pixel,4.293884765081034,platform_constant,True,H&E,4.293884765081034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641108,,,train,hesrt,samples/GSE282302/GSM8641108,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM8641109,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3156,19144,counts,pixel,4.100452681821582,platform_constant,True,H&E,4.100452681821582,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641109,,,train,hesrt,samples/GSE282302/GSM8641109,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8641110,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium (FFPE),sequencing-based,10x Genomics Visium for FFPE,,,spot,3064,19144,counts,pixel,4.477302668532266,platform_constant,True,H&E,4.477302668532266,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641110,,,train,hesrt,samples/GSE282302/GSM8641110,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 0.99}",, +GSM8641003,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3150,19144,counts,pixel,3.988683011081388,platform_constant,True,H&E,3.988683011081388,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641003,,,train,hesrt,samples/GSE282302/GSM8641003,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641004,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3826,19144,counts,pixel,4.020328180773349,platform_constant,True,H&E,4.020328180773349,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641004,,,train,hesrt,samples/GSE282302/GSM8641004,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641005,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3536,19144,counts,pixel,4.116695863365288,platform_constant,True,H&E,4.116695863365288,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641005,,,train,hesrt,samples/GSE282302/GSM8641005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM8641006,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3664,19144,counts,pixel,4.05640377866306,platform_constant,True,H&E,4.05640377866306,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641006,,,train,hesrt,samples/GSE282302/GSM8641006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641007,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4440,19144,counts,pixel,3.9676706393586105,platform_constant,True,H&E,3.9676706393586105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641007,,,train,hesrt,samples/GSE282302/GSM8641007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641008,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3706,19144,counts,pixel,3.988683011081379,platform_constant,True,H&E,3.988683011081379,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641008,,,train,hesrt,samples/GSE282302/GSM8641008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641009,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4105,19144,counts,pixel,4.025898047555061,platform_constant,True,H&E,4.025898047555061,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641009,,,train,hesrt,samples/GSE282302/GSM8641009,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641010,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4647,19144,counts,pixel,4.057669575962961,platform_constant,True,H&E,4.057669575962961,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641010,,,train,hesrt,samples/GSE282302/GSM8641010,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641011,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3824,19144,counts,pixel,3.999189169151017,platform_constant,True,H&E,3.999189169151017,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641011,,,train,hesrt,samples/GSE282302/GSM8641011,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM8641012,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4261,19144,counts,pixel,3.978215142121785,platform_constant,True,H&E,3.978215142121785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641012,,,train,hesrt,samples/GSE282302/GSM8641012,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641013,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3343,19144,counts,pixel,3.9886830110813514,platform_constant,True,H&E,3.9886830110813514,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641013,,,train,hesrt,samples/GSE282302/GSM8641013,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641014,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,1861,19144,counts,pixel,3.9993546036853544,platform_constant,True,H&E,3.9993546036853544,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641014,,,train,hesrt,samples/GSE282302/GSM8641014,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641015,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2302,19144,counts,pixel,4.0203668311475305,platform_constant,True,H&E,4.0203668311475305,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641015,,,train,hesrt,samples/GSE282302/GSM8641015,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641016,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2141,19144,counts,pixel,3.9360634796841993,platform_constant,True,H&E,3.9360634796841993,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641016,,,train,hesrt,samples/GSE282302/GSM8641016,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641017,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2979,19144,counts,pixel,4.035429926823896,platform_constant,True,H&E,4.035429926823896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641017,,,train,hesrt,samples/GSE282302/GSM8641017,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641018,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3119,19144,counts,pixel,3.98872135722725,platform_constant,True,H&E,3.98872135722725,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641018,,,train,hesrt,samples/GSE282302/GSM8641018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641019,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3249,19144,counts,pixel,3.999227616300329,platform_constant,True,H&E,3.999227616300329,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641019,,,train,hesrt,samples/GSE282302/GSM8641019,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641020,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3923,19144,counts,pixel,4.066909991022587,platform_constant,True,H&E,4.066909991022587,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641020,,,train,hesrt,samples/GSE282302/GSM8641020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641021,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3743,19144,counts,pixel,4.009860754768263,platform_constant,True,H&E,4.009860754768263,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641021,,,train,hesrt,samples/GSE282302/GSM8641021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641022,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3689,19144,counts,pixel,3.978215142121785,platform_constant,True,H&E,3.978215142121785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641022,,,train,hesrt,samples/GSE282302/GSM8641022,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641023,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3671,19144,counts,pixel,4.057708585327462,platform_constant,True,H&E,4.057708585327462,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641023,,,train,hesrt,samples/GSE282302/GSM8641023,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641024,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3477,19144,counts,pixel,3.9939997523883704,platform_constant,True,H&E,3.9939997523883704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641024,,,train,hesrt,samples/GSE282302/GSM8641024,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641025,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2387,19144,counts,pixel,4.086816343251943,platform_constant,True,H&E,4.086816343251943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641025,,,train,hesrt,samples/GSE282302/GSM8641025,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641026,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3901,19144,counts,pixel,4.186310399854576,platform_constant,True,H&E,4.186310399854576,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641026,,,train,hesrt,samples/GSE282302/GSM8641026,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641027,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3760,19144,counts,pixel,4.002726878226908,platform_constant,True,H&E,4.002726878226908,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641027,,,train,hesrt,samples/GSE282302/GSM8641027,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641028,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4086,19144,counts,pixel,4.1115638092837195,platform_constant,True,H&E,4.1115638092837195,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641028,,,train,hesrt,samples/GSE282302/GSM8641028,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641029,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4305,19144,counts,pixel,3.9451518927521656,platform_constant,True,H&E,3.9451518927521656,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641029,,,train,hesrt,samples/GSE282302/GSM8641029,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641030,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2572,19144,counts,pixel,4.1072707953331165,platform_constant,True,H&E,4.1072707953331165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641030,,,train,hesrt,samples/GSE282302/GSM8641030,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8641031,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,1854,19144,counts,pixel,4.1389413274549645,platform_constant,True,H&E,4.1389413274549645,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641031,,,train,hesrt,samples/GSE282302/GSM8641031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641032,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3379,19144,counts,pixel,4.3635807396797155,platform_constant,True,H&E,4.3635807396797155,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641032,,,train,hesrt,samples/GSE282302/GSM8641032,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641033,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3100,19144,counts,pixel,4.120402033426829,platform_constant,True,H&E,4.120402033426829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641033,,,train,hesrt,samples/GSE282302/GSM8641033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641034,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2516,19144,counts,pixel,4.29892609639909,platform_constant,True,H&E,4.29892609639909,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641034,,,train,hesrt,samples/GSE282302/GSM8641034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641035,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2508,19144,counts,pixel,4.091866822735055,platform_constant,True,H&E,4.091866822735055,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641035,,,train,hesrt,samples/GSE282302/GSM8641035,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM8641036,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2255,19144,counts,pixel,4.16206802830189,platform_constant,True,H&E,4.16206802830189,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641036,,,train,hesrt,samples/GSE282302/GSM8641036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641037,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2243,19144,counts,pixel,3.98858545794071,platform_constant,True,H&E,3.98858545794071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641037,,,train,hesrt,samples/GSE282302/GSM8641037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641040,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3064,19144,counts,pixel,4.076968251989538,platform_constant,True,H&E,4.076968251989538,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641040,,,train,hesrt,samples/GSE282302/GSM8641040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641041,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3345,19144,counts,pixel,4.086816343251924,platform_constant,True,H&E,4.086816343251924,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641041,,,train,hesrt,samples/GSE282302/GSM8641041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641042,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3899,19144,counts,pixel,4.086816343251943,platform_constant,True,H&E,4.086816343251943,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641042,,,train,hesrt,samples/GSE282302/GSM8641042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641044,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3419,19144,counts,pixel,4.534659850912342,platform_constant,True,H&E,4.534659850912342,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641044,,,train,hesrt,samples/GSE282302/GSM8641044,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641045,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3623,19144,counts,pixel,4.009544772666975,platform_constant,True,H&E,4.009544772666975,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641045,,,train,hesrt,samples/GSE282302/GSM8641045,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641046,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3733,19144,counts,pixel,3.991110508714546,platform_constant,True,H&E,3.991110508714546,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641046,,,train,hesrt,samples/GSE282302/GSM8641046,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8641047,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4210,19144,counts,pixel,3.979747326692424,platform_constant,True,H&E,3.979747326692424,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641047,,,train,hesrt,samples/GSE282302/GSM8641047,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641048,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4154,19144,counts,pixel,4.421660603335733,platform_constant,True,H&E,4.421660603335733,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641048,,,train,hesrt,samples/GSE282302/GSM8641048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641049,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2534,19144,counts,pixel,4.177724584352066,platform_constant,True,H&E,4.177724584352066,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641049,,,train,hesrt,samples/GSE282302/GSM8641049,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641050,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2487,19144,counts,pixel,3.936313232896295,platform_constant,True,H&E,3.936313232896295,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641050,,,train,hesrt,samples/GSE282302/GSM8641050,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641051,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2776,19144,counts,pixel,4.0335342246289025,platform_constant,True,H&E,4.0335342246289025,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641051,,,train,hesrt,samples/GSE282302/GSM8641051,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641052,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2694,19144,counts,pixel,3.998181293867032,platform_constant,True,H&E,3.998181293867032,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641052,,,train,hesrt,samples/GSE282302/GSM8641052,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641053,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2364,19144,counts,pixel,3.979494577842634,platform_constant,True,H&E,3.979494577842634,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641053,,,train,hesrt,samples/GSE282302/GSM8641053,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8641054,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2395,19144,counts,pixel,3.962323271167784,platform_constant,True,H&E,3.962323271167784,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641054,,,train,hesrt,samples/GSE282302/GSM8641054,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641055,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2303,19144,counts,pixel,4.137878894925712,platform_constant,True,H&E,4.137878894925712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641055,,,train,hesrt,samples/GSE282302/GSM8641055,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8641056,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2247,19144,counts,pixel,4.148767234101986,platform_constant,True,H&E,4.148767234101986,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641056,,,train,hesrt,samples/GSE282302/GSM8641056,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8641057,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2346,19144,counts,pixel,4.0385845800964395,platform_constant,True,H&E,4.0385845800964395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641057,,,train,hesrt,samples/GSE282302/GSM8641057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641058,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2375,19144,counts,pixel,3.9249501835961054,platform_constant,True,H&E,3.9249501835961054,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641058,,,train,hesrt,samples/GSE282302/GSM8641058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641059,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4257,19144,counts,pixel,3.9621390268453593,platform_constant,True,H&E,3.9621390268453593,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641059,,,train,hesrt,samples/GSE282302/GSM8641059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641060,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3564,19144,counts,pixel,3.9263886251730096,platform_constant,True,H&E,3.9263886251730096,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641060,,,train,hesrt,samples/GSE282302/GSM8641060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM8641061,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3228,19144,counts,pixel,3.9363162351840923,platform_constant,True,H&E,3.9363162351840923,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641061,,,train,hesrt,samples/GSE282302/GSM8641061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM8641062,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3568,19144,counts,pixel,3.9878350725232745,platform_constant,True,H&E,3.9878350725232745,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641062,,,train,hesrt,samples/GSE282302/GSM8641062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641063,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4431,19144,counts,pixel,3.9935315978398167,platform_constant,True,H&E,3.9935315978398167,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641063,,,train,hesrt,samples/GSE282302/GSM8641063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, +GSM8641064,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4300,19144,counts,pixel,3.9621390268453602,platform_constant,True,H&E,3.9621390268453602,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641064,,,train,hesrt,samples/GSE282302/GSM8641064,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, +GSM8641065,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4270,19144,counts,pixel,3.983151964424773,platform_constant,True,H&E,3.983151964424773,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641065,,,train,hesrt,samples/GSE282302/GSM8641065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641066,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3775,19144,counts,pixel,3.9830251265614285,platform_constant,True,H&E,3.9830251265614285,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641066,,,train,hesrt,samples/GSE282302/GSM8641066,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641067,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3337,19144,counts,pixel,3.951632793775664,platform_constant,True,H&E,3.951632793775664,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641067,,,train,hesrt,samples/GSE282302/GSM8641067,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641068,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4145,19144,counts,pixel,4.143784132125744,platform_constant,True,H&E,4.143784132125744,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641068,,,train,hesrt,samples/GSE282302/GSM8641068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641069,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3240,19144,counts,pixel,3.993658223745644,platform_constant,True,H&E,3.993658223745644,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641069,,,train,hesrt,samples/GSE282302/GSM8641069,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641070,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3295,19144,counts,pixel,4.068467810807136,platform_constant,True,H&E,4.068467810807136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641070,,,train,hesrt,samples/GSE282302/GSM8641070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641071,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3498,19144,counts,pixel,4.014544272414712,platform_constant,True,H&E,4.014544272414712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641071,,,train,hesrt,samples/GSE282302/GSM8641071,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641072,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2590,19144,counts,pixel,4.043910920763264,platform_constant,True,H&E,4.043910920763264,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641072,,,train,hesrt,samples/GSE282302/GSM8641072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641073,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3477,19144,counts,pixel,3.993658223745626,platform_constant,True,H&E,3.993658223745626,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641073,,,train,hesrt,samples/GSE282302/GSM8641073,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641074,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2691,19144,counts,pixel,4.159733603386881,platform_constant,True,H&E,4.159733603386881,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641074,,,train,hesrt,samples/GSE282302/GSM8641074,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8641075,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2783,19144,counts,pixel,4.004164574345208,platform_constant,True,H&E,4.004164574345208,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641075,,,train,hesrt,samples/GSE282302/GSM8641075,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641076,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2470,19144,counts,pixel,4.004177406129048,platform_constant,True,H&E,4.004177406129048,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641076,,,train,hesrt,samples/GSE282302/GSM8641076,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641077,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2559,19144,counts,pixel,4.014557137461431,platform_constant,True,H&E,4.014557137461431,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641077,,,train,hesrt,samples/GSE282302/GSM8641077,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, +GSM8641078,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2684,19144,counts,pixel,3.993544395549137,platform_constant,True,H&E,3.993544395549137,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641078,,,train,hesrt,samples/GSE282302/GSM8641078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641079,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3089,19144,counts,pixel,4.061467020805752,platform_constant,True,H&E,4.061467020805752,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641079,,,train,hesrt,samples/GSE282302/GSM8641079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641080,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2672,19144,counts,pixel,4.061467020805734,platform_constant,True,H&E,4.061467020805734,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641080,,,train,hesrt,samples/GSE282302/GSM8641080,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641081,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3089,19144,counts,pixel,4.116656286918105,platform_constant,True,H&E,4.116656286918105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641081,,,train,hesrt,samples/GSE282302/GSM8641081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8641082,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3364,19144,counts,pixel,4.024758781142124,platform_constant,True,H&E,4.024758781142124,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641082,,,train,hesrt,samples/GSE282302/GSM8641082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641083,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3340,19144,counts,pixel,4.097708435801431,platform_constant,True,H&E,4.097708435801431,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641083,,,train,hesrt,samples/GSE282302/GSM8641083,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641084,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3177,19144,counts,pixel,3.9813795988779765,platform_constant,True,H&E,3.9813795988779765,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641084,,,train,hesrt,samples/GSE282302/GSM8641084,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641085,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3862,19144,counts,pixel,4.04593635481292,platform_constant,True,H&E,4.04593635481292,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641085,,,train,hesrt,samples/GSE282302/GSM8641085,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641086,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,1940,19144,counts,pixel,4.020113763774046,platform_constant,True,H&E,4.020113763774046,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641086,,,train,hesrt,samples/GSE282302/GSM8641086,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641087,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2927,19144,counts,pixel,3.9935315978398074,platform_constant,True,H&E,3.9935315978398074,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641087,,,train,hesrt,samples/GSE282302/GSM8641087,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641088,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4060,19144,counts,pixel,4.014544272414712,platform_constant,True,H&E,4.014544272414712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641088,,,train,hesrt,samples/GSE282302/GSM8641088,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 0.99}",, +GSM8641089,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2364,19144,counts,pixel,4.035429926823896,platform_constant,True,H&E,4.035429926823896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641089,,,train,hesrt,samples/GSE282302/GSM8641089,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641090,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3894,19144,counts,pixel,4.00441936691234,platform_constant,True,H&E,4.00441936691234,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641090,,,train,hesrt,samples/GSE282302/GSM8641090,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8641091,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3577,19144,counts,pixel,4.061506066677896,platform_constant,True,H&E,4.061506066677896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641091,,,train,hesrt,samples/GSE282302/GSM8641091,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM8641092,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3040,19144,counts,pixel,4.061506066677896,platform_constant,True,H&E,4.061506066677896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641092,,,train,hesrt,samples/GSE282302/GSM8641092,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, +GSM8641093,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3091,19144,counts,pixel,4.043277984841253,platform_constant,True,H&E,4.043277984841253,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641093,,,train,hesrt,samples/GSE282302/GSM8641093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641094,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3347,19144,counts,pixel,4.079986827282776,platform_constant,True,H&E,4.079986827282776,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641094,,,train,hesrt,samples/GSE282302/GSM8641094,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641095,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3509,19144,counts,pixel,4.095429830501896,platform_constant,True,H&E,4.095429830501896,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641095,,,train,hesrt,samples/GSE282302/GSM8641095,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641096,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4216,19144,counts,pixel,4.063762678319425,platform_constant,True,H&E,4.063762678319425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641096,,,train,hesrt,samples/GSE282302/GSM8641096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641097,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3336,19144,counts,pixel,4.063277984338962,platform_constant,True,H&E,4.063277984338962,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641097,,,train,hesrt,samples/GSE282302/GSM8641097,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8641098,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2649,19144,counts,pixel,4.106439329901525,platform_constant,True,H&E,4.106439329901525,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641098,,,train,hesrt,samples/GSE282302/GSM8641098,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641099,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,2760,19144,counts,pixel,3.9993546036853727,platform_constant,True,H&E,3.9993546036853727,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641099,,,train,hesrt,samples/GSE282302/GSM8641099,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641100,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3147,19144,counts,pixel,4.05201226698438,platform_constant,True,H&E,4.05201226698438,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641100,,,train,hesrt,samples/GSE282302/GSM8641100,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641101,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3651,19144,counts,pixel,4.0203668311475305,platform_constant,True,H&E,4.0203668311475305,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641101,,,train,hesrt,samples/GSE282302/GSM8641101,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8641102,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4152,19144,counts,pixel,3.9350881976691365,platform_constant,True,H&E,3.9350881976691365,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641102,,,train,hesrt,samples/GSE282302/GSM8641102,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8641103,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3840,19144,counts,pixel,4.090856921359118,platform_constant,True,H&E,4.090856921359118,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641103,,,train,hesrt,samples/GSE282302/GSM8641103,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641104,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4561,19144,counts,pixel,4.060049271516082,platform_constant,True,H&E,4.060049271516082,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641104,,,train,hesrt,samples/GSE282302/GSM8641104,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8641105,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,4399,19144,counts,pixel,4.136816112781218,platform_constant,True,H&E,4.136816112781218,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641105,,,train,hesrt,samples/GSE282302/GSM8641105,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641106,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3094,19144,counts,pixel,4.144644158690165,platform_constant,True,H&E,4.144644158690165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641106,,,train,hesrt,samples/GSE282302/GSM8641106,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641107,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3571,19144,counts,pixel,4.330247698226404,platform_constant,True,H&E,4.330247698226404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641107,,,train,hesrt,samples/GSE282302/GSM8641107,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, +GSM8641108,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3996,19144,counts,pixel,4.293884765081034,platform_constant,True,H&E,4.293884765081034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641108,,,train,hesrt,samples/GSE282302/GSM8641108,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8641109,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3156,19144,counts,pixel,4.100452681821582,platform_constant,True,H&E,4.100452681821582,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641109,,,train,hesrt,samples/GSE282302/GSM8641109,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM8641110,GSE282302+GSE310353,GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,"post-neoadjuvant, resected PDAC tumor",tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,neoadjuvant FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium for FFPE,,,spot,3064,19144,counts,pixel,4.477302668532266,platform_constant,True,H&E,4.477302668532266,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41533516,,GSM8641110,,,train,hesrt,samples/GSE282302/GSM8641110,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 0.99}",, GSM8645793,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,CD1 wildtype,embryonic,luna,embryonic,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,741,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.14967109386816,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42141139,,GSM8645793,,,train,sda-all,samples/GSE282547/GSM8645793,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8645794,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,CD1 wildtype,embryonic,luna,embryonic,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,621,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.141410479219055,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42141139,,GSM8645794,,,train,sda-all,samples/GSE282547/GSM8645794,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.6000000000000001}",, GSM8645795,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,CD1 wildtype,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1293,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.154472187548012,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42141139,,GSM8645795,,,train,sda-all,samples/GSE282547/GSM8645795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5618,7 +5618,7 @@ GSM8645806,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hea GSM8645807,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,perturbation,luna,,tamoxifen,embryonic,luna,embryonic,,unknown,,,,,,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,21639,30069,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42141139,,GSM8645807,,,train,sda-all,samples/GSE282547/GSM8645807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9065771,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,CD1 wildtype,embryonic,luna,embryonic,,unknown,,,,,,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,21975,22731,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42141139,,GSM9065771,,,train,sda-all,samples/GSE282547/GSM9065771,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9065772,GSE282547,GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,CD1 wildtype,embryonic,luna,embryonic,,unknown,,,,,,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,18028,21471,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42141139,,GSM9065772,,,train,sda-all,samples/GSE282547/GSM9065772,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8647873,GSE242821+GSE282635,GSE282635,Atf3 controls transitioning in female mitochondrial cardiomyopathy as identified by single-cell transcriptomics [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0004994,cardiomyopathy,disease,luna,mitochondrial cardiomyopathy,mitochondrial cardiomyopathy,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,400,18085,counts,pixel,2.7634184595142437,platform_constant,True,H&E,2.7634184595142437,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40184463,,GSM8647873,,,train,hesrt,samples/GSE282635/GSM8647873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8647873,GSE242821+GSE282635,GSE282635,Atf3 controls transitioning in female mitochondrial cardiomyopathy as identified by single-cell transcriptomics [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0004994,cardiomyopathy,disease,luna,mitochondrial cardiomyopathy,mitochondrial cardiomyopathy,not stated,luna,not stated,,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,400,18085,counts,pixel,2.7634184595142433,platform_constant,True,H&E,2.7634184595142433,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40184463,,GSM8647873,,,train,hesrt,samples/GSE282635/GSM8647873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8647884,GSE282639,GSE282639,Ectopic expression of MUC5B in the respiratory bronchiole initiates ER stress in the IPF lung,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,lung tissue FFPE,primary tissue,,,normal,luna,Control,GG,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,cosmx,,,cell,1620,985,counts,pixel,,unresolved,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,41091081,,GSM8647884,,,train,sda-all,samples/GSE282639/GSM8647884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8647885,GSE282639,GSE282639,Ectopic expression of MUC5B in the respiratory bronchiole initiates ER stress in the IPF lung,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,lung tissue FFPE,primary tissue,MONDO:0800504,idiopathic pulmonary fibrosis,disease,luna,IPF,GT,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,cosmx,,,cell,4605,985,counts,pixel,,unresolved,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,41091081,,GSM8647885,,,train,sda-all,samples/GSE282639/GSM8647885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8647886,GSE282639,GSE282639,Ectopic expression of MUC5B in the respiratory bronchiole initiates ER stress in the IPF lung,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,lung tissue FFPE,primary tissue,,,normal,luna,Control,GT,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,cosmx,,,cell,1933,985,counts,pixel,,unresolved,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,41091081,,GSM8647886,,,train,sda-all,samples/GSE282639/GSM8647886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5729,16 +5729,16 @@ GSM8659163,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659164,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2214,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.020913427001122,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659164,,,test,sda-all,samples/GSE283283/GSM8659164,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659165,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3219,32285,counts,um,1.0,verified,True,H&E,3.995006980606368,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659165,,,test,sda-all,samples/GSE283283/GSM8659165,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659166,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2665,32285,counts,um,1.0,verified,True,H&E,4.005304742036996,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659166,,,test,sda-all,samples/GSE283283/GSM8659166,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8659167,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1032,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.987269560736917,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659167,,,test,sda-all,samples/GSE283283/GSM8659167,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8659167,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1032,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.9872695607369173,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659167,,,test,sda-all,samples/GSE283283/GSM8659167,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659168,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2773,32285,counts,um,1.0,verified,True,H&E,4.052053105511029,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659168,,,test,sda-all,samples/GSE283283/GSM8659168,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659169,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2799,32285,counts,um,1.0,verified,True,H&E,4.030167548135657,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659169,,,test,sda-all,samples/GSE283283/GSM8659169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8659170,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2647,32285,counts,um,1.0,verified,True,H&E,4.127875593632909,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659170,,,test,sda-all,samples/GSE283283/GSM8659170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8659171,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2320,32285,counts,um,1.0,verified,True,H&E,3.985244816885922,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659171,,,test,sda-all,samples/GSE283283/GSM8659171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8659171,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2320,32285,counts,um,1.0,verified,True,H&E,3.9852448168859222,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659171,,,test,sda-all,samples/GSE283283/GSM8659171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659172,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2064,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.0162838805809145,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659172,,,test,sda-all,samples/GSE283283/GSM8659172,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8659173,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3163,32285,counts,um,1.0,verified,True,H&E,4.014430204865883,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659173,,,test,sda-all,samples/GSE283283/GSM8659173,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8659174,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2976,32285,counts,um,1.0,verified,True,H&E,4.015328159684176,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659174,,,test,sda-all,samples/GSE283283/GSM8659174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.97}",, +GSM8659174,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2976,32285,counts,um,1.0,verified,True,H&E,4.0153281596841754,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659174,,,test,sda-all,samples/GSE283283/GSM8659174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8659175,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1993,32285,counts,um,1.0,verified,True,H&E,3.979841000495759,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659175,,,test,sda-all,samples/GSE283283/GSM8659175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8659176,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,916,32285,counts,um,1.0,verified,True,H&E,4.018090609272679,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659176,,,test,sda-all,samples/GSE283283/GSM8659176,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8659176,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:2,2,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,916,32285,counts,um,1.0,verified,True,H&E,4.0180906092726785,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659176,,,test,sda-all,samples/GSE283283/GSM8659176,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659177,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:3,3,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2333,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.029211787317144,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659177,,,test,sda-all,samples/GSE283283/GSM8659177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659178,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:3,3,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3059,32285,counts,um,1.0,verified,True,H&E,4.021103656322361,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659178,,,test,sda-all,samples/GSE283283/GSM8659178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8659179,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:3,3,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3221,32285,counts,um,1.0,verified,True,H&E,4.008234930794761,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659179,,,test,sda-all,samples/GSE283283/GSM8659179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -5746,8 +5746,8 @@ GSM8659180,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659181,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:3,3,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,572,32285,counts,um,1.0,verified,True,H&E,4.021334872913344,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659181,,,test,sda-all,samples/GSE283283/GSM8659181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8659182,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2835,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.042111357124931,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659182,,,test,sda-all,samples/GSE283283/GSM8659182,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659183,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2745,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.038919627461689,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659183,,,test,sda-all,samples/GSE283283/GSM8659183,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8659184,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2693,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.035750501219948,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659184,,,test,sda-all,samples/GSE283283/GSM8659184,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8659185,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2492,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.034028360912616,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659185,,,test,sda-all,samples/GSE283283/GSM8659185,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8659184,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2693,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.0357505012199475,VERIFIED,ABSENT,ABSENT,,,VERIFIED,,,,,,GSM8659184,,,test,sda-all,samples/GSE283283/GSM8659184,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8659185,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2492,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.0340283609126155,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659185,,,test,sda-all,samples/GSE283283/GSM8659185,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659186,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1484,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.991489196645646,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659186,,,test,sda-all,samples/GSE283283/GSM8659186,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659187,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2592,32285,counts,um,1.0,verified,True,H&E,3.992359003194768,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659187,,,test,sda-all,samples/GSE283283/GSM8659187,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659188,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:4,4,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2694,32285,counts,um,1.0,verified,True,H&E,3.984012573125066,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659188,,,test,sda-all,samples/GSE283283/GSM8659188,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5759,7 +5759,7 @@ GSM8659193,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659194,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:5,5,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2302,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.0524509419472885,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659194,,,test,sda-all,samples/GSE283283/GSM8659194,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659195,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:5,5,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3365,32285,counts,um,1.0,verified,True,H&E,4.034059713959665,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659195,,,test,sda-all,samples/GSE283283/GSM8659195,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659196,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:5,5,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2765,32285,counts,um,1.0,verified,True,H&E,3.9434008171543127,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659196,,,test,sda-all,samples/GSE283283/GSM8659196,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM8659197,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:5,5,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1067,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),3.989920010760751,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659197,,,test,sda-all,samples/GSE283283/GSM8659197,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8659197,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:5,5,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1067,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),3.9899200107607506,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659197,,,test,sda-all,samples/GSE283283/GSM8659197,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8659198,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:6,6,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3029,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.02291587134598,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659198,,,test,sda-all,samples/GSE283283/GSM8659198,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8659199,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:6,6,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3075,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.061809670019915,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659199,,,test,sda-all,samples/GSE283283/GSM8659199,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659200,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:6,6,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2856,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.035970158569859,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659200,,,test,sda-all,samples/GSE283283/GSM8659200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.93}",, @@ -5775,7 +5775,7 @@ GSM8659209,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659210,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:7,7,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2206,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.041382802662724,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659210,,,test,sda-all,samples/GSE283283/GSM8659210,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659211,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:7,7,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3615,32285,counts,um,1.0,verified,True,H&E,3.972410883913362,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659211,,,test,sda-all,samples/GSE283283/GSM8659211,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659212,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:7,7,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2478,32285,counts,um,1.0,verified,True,H&E,4.064442111041482,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659212,,,test,sda-all,samples/GSE283283/GSM8659212,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8659213,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:7,7,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2407,32285,counts,um,1.0,verified,True,H&E,3.941695640542697,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659213,,,test,sda-all,samples/GSE283283/GSM8659213,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8659213,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:7,7,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2407,32285,counts,um,1.0,verified,True,H&E,3.9416956405426973,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659213,,,test,sda-all,samples/GSE283283/GSM8659213,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659214,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:7,7,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,884,32285,counts,um,1.0,verified,True,H&E,4.0233232257919225,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659214,,,test,sda-all,samples/GSE283283/GSM8659214,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8659215,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:8,8,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2625,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.0929276804509405,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659215,,,test,sda-all,samples/GSE283283/GSM8659215,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659216,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:8,8,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2854,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.047272234794894,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659216,,,test,sda-all,samples/GSE283283/GSM8659216,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5788,15 +5788,15 @@ GSM8659222,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659223,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3094,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.04325342364886,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659223,,,test,sda-all,samples/GSE283283/GSM8659223,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659224,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3001,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.048136137708625,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659224,,,test,sda-all,samples/GSE283283/GSM8659224,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8659225,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2985,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.069257421806186,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659225,,,test,sda-all,samples/GSE283283/GSM8659225,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM8659226,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2451,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.035135292679216,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659226,,,test,sda-all,samples/GSE283283/GSM8659226,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.93}",, -GSM8659227,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1371,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.992012846733436,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659227,,,test,sda-all,samples/GSE283283/GSM8659227,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8659226,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2451,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.0351352926792154,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659226,,,test,sda-all,samples/GSE283283/GSM8659226,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.93}",, +GSM8659227,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1371,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.9920128467334357,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659227,,,test,sda-all,samples/GSE283283/GSM8659227,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659228,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3406,32285,counts,um,1.0,verified,True,H&E,4.025798211134232,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659228,,,test,sda-all,samples/GSE283283/GSM8659228,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659229,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3306,32285,counts,um,1.0,verified,True,H&E,3.9706314276995385,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659229,,,test,sda-all,samples/GSE283283/GSM8659229,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8659230,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3127,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.024445774953519,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659230,,,test,sda-all,samples/GSE283283/GSM8659230,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, -GSM8659231,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2926,32285,counts,um,1.0,verified,True,H&E,3.990951329477364,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659231,,,test,sda-all,samples/GSE283283/GSM8659231,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM8659232,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,806,32285,counts,um,1.0,verified,True,H&E,3.996511670316284,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659232,,,test,sda-all,samples/GSE283283/GSM8659232,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8659231,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2926,32285,counts,um,1.0,verified,True,H&E,3.9909513294773635,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659231,,,test,sda-all,samples/GSE283283/GSM8659231,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8659232,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:9,9,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,806,32285,counts,um,1.0,verified,True,H&E,3.9965116703162837,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659232,,,test,sda-all,samples/GSE283283/GSM8659232,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659233,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2679,32285,counts,um,1.0,verified,True,H&E,4.05236308565057,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659233,,,test,sda-all,samples/GSE283283/GSM8659233,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8659234,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3822,32285,counts,um,1.0,verified,True,H&E,3.947119174806157,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659234,,,test,sda-all,samples/GSE283283/GSM8659234,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8659234,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3822,32285,counts,um,1.0,verified,True,H&E,3.9471191748061574,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659234,,,test,sda-all,samples/GSE283283/GSM8659234,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659235,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3170,32285,counts,um,1.0,verified,True,H&E,3.997431384529482,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659235,,,test,sda-all,samples/GSE283283/GSM8659235,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659236,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,567,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.007675062428843,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659236,,,test,sda-all,samples/GSE283283/GSM8659236,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659237,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:11,11,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3178,32285,counts,um,1.0,verified,True,H&E,4.0126444822144265,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659237,,,test,sda-all,samples/GSE283283/GSM8659237,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5825,11 +5825,11 @@ GSM8659259,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659260,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:14,14,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3502,32285,counts,um,1.0,verified,True,H&E,3.9651629801421935,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659260,,,test,sda-all,samples/GSE283283/GSM8659260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659261,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:14,14,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3407,32285,counts,um,1.0,verified,True,H&E,4.014785412842418,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659261,,,test,sda-all,samples/GSE283283/GSM8659261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.91}",, GSM8659262,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:14,14,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1185,32285,counts,um,1.0,verified,True,H&E,3.981572733662267,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659262,,,test,sda-all,samples/GSE283283/GSM8659262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.99}",, -GSM8659263,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:14,14,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,973,32285,counts,um,1.0,verified,True,H&E,4.03609405679356,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659263,,,test,sda-all,samples/GSE283283/GSM8659263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8659263,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,73 weeks,male,male,GSE283283:14,14,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,973,32285,counts,um,1.0,verified,True,H&E,4.0360940567935595,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659263,,,test,sda-all,samples/GSE283283/GSM8659263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659264,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3018,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.02102724930815,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659264,,,test,sda-all,samples/GSE283283/GSM8659264,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, -GSM8659265,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3012,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.987898360902965,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659265,,,test,sda-all,samples/GSE283283/GSM8659265,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8659265,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3012,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.9878983609029652,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659265,,,test,sda-all,samples/GSE283283/GSM8659265,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8659266,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2997,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.022621045548528,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659266,,,test,sda-all,samples/GSE283283/GSM8659266,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8659267,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2593,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.989429043159215,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659267,,,test,sda-all,samples/GSE283283/GSM8659267,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.97}",, +GSM8659267,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2593,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.9894290431592148,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659267,,,test,sda-all,samples/GSE283283/GSM8659267,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM8659268,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1640,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),3.969364028775509,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659268,,,test,sda-all,samples/GSE283283/GSM8659268,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.92}",, GSM8659269,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3179,32285,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.027942530706114,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659269,,,test,sda-all,samples/GSE283283/GSM8659269,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",, GSM8659270,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:15,15,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3489,32285,counts,um,1.0,verified,True,H&E,3.930112519263687,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659270,,,test,sda-all,samples/GSE283283/GSM8659270,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -5857,9 +5857,9 @@ GSM8659291,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659292,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,Olfactory bulb,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H307,BNI-H307,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,450,38514,counts,um,1.0,verified,True,H&E,4.024027507549883,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659292,,,test,sda-all,samples/GSE283283/GSM8659292,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 0.87}",, GSM8659293,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H307,BNI-H307,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3254,38514,counts,um,1.0,verified,True,H&E,4.016868904122183,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659293,,,test,sda-all,samples/GSE283283/GSM8659293,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.92}",, GSM8659294,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H307,BNI-H307,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3614,38514,counts,um,1.0,verified,True,H&E,4.010260847111578,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659294,,,test,sda-all,samples/GSE283283/GSM8659294,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 0.86}",, -GSM8659295,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H307,BNI-H307,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3200,38514,counts,um,1.0,verified,True,H&E,3.99024445412864,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659295,,,test,sda-all,samples/GSE283283/GSM8659295,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 0.93}",, +GSM8659295,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H307,BNI-H307,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3200,38514,counts,um,1.0,verified,True,H&E,3.9902444541286397,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659295,,,test,sda-all,samples/GSE283283/GSM8659295,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 0.93}",, GSM8659296,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H308,BNI-H308,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3722,38514,counts,um,1.0,verified,True,H&E,4.017251306789092,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659296,,,test,sda-all,samples/GSE283283/GSM8659296,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.87}",, -GSM8659297,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H308,BNI-H308,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4295,38514,counts,um,1.0,verified,True,H&E,3.978709858115956,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659297,,,test,sda-all,samples/GSE283283/GSM8659297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 0.87}",, +GSM8659297,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H308,BNI-H308,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4295,38514,counts,um,1.0,verified,True,H&E,3.9787098581159563,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659297,,,test,sda-all,samples/GSE283283/GSM8659297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 0.87}",, GSM8659298,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H308,BNI-H308,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3730,38514,counts,um,1.0,verified,True,H&E,4.043616680812108,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659298,,,test,sda-all,samples/GSE283283/GSM8659298,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.98, ""life_stage"": 0.9500000000000001}",, GSM8659299,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H309,BNI-H309,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3197,38514,counts,um,1.0,verified,True,H&E,4.026619238742295,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659299,,,test,sda-all,samples/GSE283283/GSM8659299,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",, GSM8659300,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,Olfactory bulb,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H309,BNI-H309,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1142,38514,counts,um,1.0,verified,True,H&E,3.991560606043408,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659300,,,test,sda-all,samples/GSE283283/GSM8659300,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.89}",, @@ -5874,7 +5874,7 @@ GSM8659308,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659309,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0002264,olfactory bulb,Olfactory bulb,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H311,BNI-H311,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,871,38514,counts,um,1.0,verified,True,H&E,4.036632683389745,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659309,,,test,sda-all,samples/GSE283283/GSM8659309,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8659310,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H311,BNI-H311,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3391,38514,counts,um,1.0,verified,True,H&E,4.0347052986355605,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659310,,,test,sda-all,samples/GSE283283/GSM8659310,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.76}",, GSM8659311,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H311,BNI-H311,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4157,38514,counts,um,1.0,verified,True,H&E,4.070035861129638,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659311,,,test,sda-all,samples/GSE283283/GSM8659311,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.81}",, -GSM8659312,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H311,BNI-H311,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2919,38514,counts,um,1.0,verified,True,H&E,3.991639891402604,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659312,,,test,sda-all,samples/GSE283283/GSM8659312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.98}",, +GSM8659312,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005625,cerebral malaria,disease,luna,Cerebral malaria,Plasmodium berghei ANKA infection,adult,age rule: age with unit,adult,2 months,female,female,GSE283283:BNI-H311,BNI-H311,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2919,38514,counts,um,1.0,verified,True,H&E,3.9916398914026043,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8659312,,,test,sda-all,samples/GSE283283/GSM8659312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM8659313,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,StereoSeq,,,bin,42298,24082,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8659313,,,test,sda-all,samples/GSE283283/GSM8659313,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659314,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,StereoSeq,,,bin,42518,24758,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8659314,,,test,sda-all,samples/GSE283283/GSM8659314,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8659315,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,adult,age rule: age with unit,adult,17 weeks,male,male,GSE283283:10,10,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,StereoSeq,,,bin,38115,25457,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8659315,,,test,sda-all,samples/GSE283283/GSM8659315,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5891,8 +5891,8 @@ GSM8659325,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complemen GSM8659326,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:12,12,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,StereoSeq,,,bin,35887,25560,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8659326,,,test,sda-all,samples/GSE283283/GSM8659326,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM8659327,GSE283283,GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wildtype,aged,age rule: age with unit,aged,112 weeks,male,male,GSE283283:12,12,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,StereoSeq,,,bin,31460,25180,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8659327,,,test,sda-all,samples/GSE283283/GSM8659327,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8659692,GSE283302,GSE283302,Spatial Transcriptomic Profiling of the Mouse Adrenal Gland and Adjacent Adipose Tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,adrenal gland,luna,UBERON:0018303,adrenal tissue,adrenal gland with adjacent adipose tissue,primary tissue,,,normal,luna,,intact,adult,age rule: age with unit,adult,10 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,992,19465,counts,pixel,2.823022150545312,platform_constant,True,H&E,2.823022150545312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41442035,,GSM8659692,,,train,hesrt,samples/GSE283302/GSM8659692,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8660262,GSE283333,GSE283333,Comprehensive immune profiling reveals IFN-γ signaling in T cells mediates parasite phagocytosis in a rodent malaria model : Spatial transcriptomics data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,noninfection,not stated,luna,not stated,,unknown,,,,,,BMK S1000,release v3,BMK S1000,sequencing-based,BMKMANU Spatial Transcriptomics,,,,16340,54838,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8660262,,,train,hesrt,samples/GSE283333/GSM8660262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8660263,GSE283333,GSE283333,Comprehensive immune profiling reveals IFN-γ signaling in T cells mediates parasite phagocytosis in a rodent malaria model : Spatial transcriptomics data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005136,malaria,disease,luna,,Pb NK65-E infection,not stated,luna,not stated,,unknown,,,,,,BMK S1000,release v3,BMK S1000,sequencing-based,BMKMANU Spatial Transcriptomics,,,,37716,54838,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8660263,,,train,hesrt,samples/GSE283333/GSM8660263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8660262,GSE283333,GSE283333,Comprehensive immune profiling reveals IFN-γ signaling in T cells mediates parasite phagocytosis in a rodent malaria model : Spatial transcriptomics data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,noninfection,not stated,luna,not stated,,unknown,,,,,,BMK S1000,release v3,BMKMANU S1000,sequencing-based,BMKMANU Spatial Transcriptomics,,,,16340,54838,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8660262,,,train,hesrt,samples/GSE283333/GSM8660262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8660263,GSE283333,GSE283333,Comprehensive immune profiling reveals IFN-γ signaling in T cells mediates parasite phagocytosis in a rodent malaria model : Spatial transcriptomics data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005136,malaria,disease,luna,,Pb NK65-E infection,not stated,luna,not stated,,unknown,,,,,,BMK S1000,release v3,BMKMANU S1000,sequencing-based,BMKMANU Spatial Transcriptomics,,,,37716,54838,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8660263,,,train,hesrt,samples/GSE283333/GSM8660263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8662111,GSE283411,GSE283411,Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0001890,forebrain,forebrain,primary tissue,,,normal,luna,,wild-type,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Slide-seq,release v3,Curio Seeker,sequencing-based,Curio Seeker,,,bead,68890,24102,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,39952245,,GSM8662111,,,train,sda-all,samples/GSE283411/GSM8662111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8662112,GSE283411,GSE283411,Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0001890,forebrain,forebrain,primary tissue,,,normal,luna,,wild-type,juvenile,luna,juvenile,,unknown,,,,,,Slide-seq,release v3,Curio Seeker,sequencing-based,Curio Seeker,,,bead,65031,23626,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,39952245,,GSM8662112,,,train,sda-all,samples/GSE283411/GSM8662112,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM8662113,GSE283412,GSE283412,Integrated Methylation and Spatial Transcriptomic Profiling of Metaplastic Breast Cancer to Investigate Intra-tumoral Heterogeneity.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,MpBC,tumour tissue,MONDO:0007254,breast cancer,disease,luna,metaplastic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4238,17943,counts,pixel,0.8333043996551018,platform_constant,True,H&E,0.8333043996551018,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40790295,10.1038/s41523-025-00807-x,GSM8662113,,,train,hesrt,samples/GSE283412/GSM8662113,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -5915,9 +5915,9 @@ GSM8662294,GSE283418,GSE283418,Spatial molecular profiling of amygdalar neurons GSM8662295,GSE283418,GSE283418,Spatial molecular profiling of amygdalar neurons enables precision pharmacology against pain unpleasantness,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0001876,amygdala,amygdala brain tissue,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,,,Molecular Cartography,release v3,Molecular Cartography,imaging-based,Resolve Biosciences Molecular Cartography,,,cell,7418,99,counts,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM8662295,,,train,sda-all,samples/GSE283418/GSM8662295,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8662446,GSE283435,GSE283435,Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,perturbation,luna,,Six2-TGCtg/+;Enl+/+ and Six2-TGCtg/+;EnlT1/+,embryonic,luna,embryonic,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visiumHD,,,bin,302036,19059,counts,um,1.0,verified,True,H&E,1.3381432859179192,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40087269,,GSM8662446,,,train,sda-all,samples/GSE283435/GSM8662446,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 0.72}",, GSM8662447,GSE283435,GSE283435,Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,perturbation,luna,,Foxd1GC/+;Enl+/+ and Foxd1GC/+;EnlT1/+,embryonic,luna,embryonic,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visiumHD,,,bin,232640,19059,counts,um,1.0,verified,True,H&E,1.333983123513762,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40087269,,GSM8662447,,,train,sda-all,samples/GSE283435/GSM8662447,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.88}",, -GSM8664001,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Whole brain organoid,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,44302,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999855919644326,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664001,,,train,sda-all,samples/GSE283497/GSM8664001,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM8664001,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Whole brain organoid,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,44302,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998559196443265,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664001,,,train,sda-all,samples/GSE283497/GSM8664001,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8664002,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Whole brain section,organoid,MONDO:0016680,high grade astrocytic tumor,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,69800,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000006467970609,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664002,,,train,sda-all,samples/GSE283497/GSM8664002,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.39, ""disease_status"": 0.35000000000000003, ""uberon"": 0.84, ""life_stage"": 0.99}",sample_kind;disease_status,low_confidence_annotation -GSM8664003,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,uberon_chain,UBERON:0000955,brain,Whole brain organoid,organoid,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,29567,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999923013754875,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664003,,,train,sda-all,samples/GSE283497/GSM8664003,sda-tissue-disease-2.3,"{""organ"": 0.5, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.56, ""life_stage"": 1.0}",organ;disease_status;uberon,low_confidence_annotation +GSM8664003,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,uberon_chain,UBERON:0000955,brain,Whole brain organoid,organoid,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,29567,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999230137548756,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664003,,,train,sda-all,samples/GSE283497/GSM8664003,sda-tissue-disease-2.3,"{""organ"": 0.5, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.56, ""life_stage"": 1.0}",organ;disease_status;uberon,low_confidence_annotation GSM8664004,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Whole brain section,primary tissue,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,69218,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000120606478291,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664004,,,train,sda-all,samples/GSE283497/GSM8664004,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.75, ""disease_status"": 0.55, ""uberon"": 0.65, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8664005,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Whole brain organoid,organoid,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,13735,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000443141532589,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664005,,,train,sda-all,samples/GSE283497/GSM8664005,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 1.0, ""disease_status"": 0.15, ""uberon"": 0.58, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM8664006,GSE283497,GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Whole brain section,organoid,MONDO:0018177,glioblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Brain Gene Expression,xenium-1.4.0.6,cell,39391,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000064486174165,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39836549,,GSM8664006,,,train,sda-all,samples/GSE283497/GSM8664006,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.65, ""disease_status"": 0.41000000000000003, ""uberon"": 0.73, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -5933,7 +5933,7 @@ GSM8673673,GSE283872,GSE283872,Prior High Fiber Intake Impinges on the Cellular GSM8673674,GSE283872,GSE283872,Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0004921,subdivision of digestive tract,duodenum tissue and colon tissue,primary tissue,,,perturbation,luna,,"CD or HfiD feed 5w, HFD feed 4w",not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo-seq,,,bin,11454,22679,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,PASS,,,41520334,,GSM8673674,,,test,sda-all,samples/GSE283872/GSM8673674,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.64, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8673675,GSE283872,GSE283872,Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0004921,subdivision of digestive tract,duodenum tissue and colon tissue,primary tissue,,,perturbation,luna,,"CD or HfiD feed 5w, HFD feed 8w",not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo-seq,,,bin,7013,20514,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,PASS,,,41520334,,GSM8673675,,,test,sda-all,samples/GSE283872/GSM8673675,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.37, ""uberon"": 0.53, ""life_stage"": 0.59}",disease_status;uberon;life_stage,low_confidence_annotation GSM9093371,GSE283872,GSE283872,Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0004921,subdivision of digestive tract,duodenum tissue and colon tissue,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo-seq,,,bin,7045,23902,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,PASS,,,41520334,,GSM9093371,,,test,sda-all,samples/GSE283872/GSM9093371,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.42, ""life_stage"": 0.42}",uberon;life_stage,low_confidence_annotation -GSM8673819,GSE283883,GSE283883,Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,,adult,luna,adult,Adult,male,Male,,,fresh frozen,Fresh frozen,Other,release v3,"other (named, not in list)",sequencing-based,other,,,bin,25000000,18617,counts,native_grid,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM8673819,,,train,sda-all,samples/GSE283883/GSM8673819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8673819,GSE283883,GSE283883,Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,,adult,luna,adult,Adult,male,Male,,,fresh frozen,Fresh frozen,Other,release v3,"other (named in GEO, not in list)",sequencing-based,other,,,bin,25000000,18617,counts,native_grid,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM8673819,,,train,sda-all,samples/GSE283883/GSM8673819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8674625,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3807,36945,counts,pixel,4.180973644906514,platform_constant,True,H&E,4.180973644906514,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674625,,,test,hesrt,samples/GSE283945/GSM8674625,sda-tissue-disease-2.3,"{""organ"": 0.5700000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.36, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation GSM8674626,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,intestine,primary tissue,,,normal,luna,NON_CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4609,36945,counts,pixel,4.542581539458849,platform_constant,True,H&E,4.542581539458849,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674626,,,test,hesrt,samples/GSE283945/GSM8674626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 0.68, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8674627,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4922,36945,counts,pixel,4.504416950558462,platform_constant,True,H&E,4.504416950558462,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674627,,,test,hesrt,samples/GSE283945/GSM8674627,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.59, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -5944,7 +5944,7 @@ GSM8674631,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Croh GSM8674632,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,intestine,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,DIVERTICULAR,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2526,36945,counts,pixel,4.502654878783435,platform_constant,True,H&E,4.502654878783435,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674632,,,test,hesrt,samples/GSE283945/GSM8674632,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.55, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8674633,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4987,36945,counts,pixel,4.091303775696442,platform_constant,True,H&E,4.091303775696442,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674633,,,test,hesrt,samples/GSE283945/GSM8674633,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 0.99}",, GSM8674634,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,intestine,primary tissue,MONDO:0005020,intestinal disorder,disease,luna,DIVERTICULAR,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4053,36945,counts,pixel,4.1626467922476005,platform_constant,True,H&E,4.1626467922476005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674634,,,test,hesrt,samples/GSE283945/GSM8674634,sda-tissue-disease-2.3,"{""organ"": 0.32, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.46, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation -GSM8674635,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005020,intestinal disorder,disease,luna,DIVERTICULAR,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2349,36945,counts,pixel,4.50088489895106,platform_constant,True,H&E,4.50088489895106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674635,,,test,hesrt,samples/GSE283945/GSM8674635,sda-tissue-disease-2.3,"{""organ"": 0.37, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.74, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM8674635,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005020,intestinal disorder,disease,luna,DIVERTICULAR,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2349,36945,counts,pixel,4.5008848989510595,platform_constant,True,H&E,4.5008848989510595,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674635,,,test,hesrt,samples/GSE283945/GSM8674635,sda-tissue-disease-2.3,"{""organ"": 0.37, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.74, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8674636,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,healthy,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1906,36945,counts,pixel,4.503539817874815,platform_constant,True,H&E,4.503539817874815,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674636,,,test,hesrt,samples/GSE283945/GSM8674636,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM8674637,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,NON_CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2446,36945,counts,pixel,4.181817592994338,platform_constant,True,H&E,4.181817592994338,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674637,,,test,hesrt,samples/GSE283945/GSM8674637,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.81, ""life_stage"": 1.0}",organ;disease_status,low_confidence_annotation GSM8674638,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3523,36945,counts,pixel,4.501106270646435,platform_constant,True,H&E,4.501106270646435,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674638,,,test,hesrt,samples/GSE283945/GSM8674638,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 1.0}",, @@ -5968,14 +5968,14 @@ GSM8674655,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Croh GSM8674656,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1335,36945,counts,pixel,4.184349571110809,platform_constant,True,H&E,4.184349571110809,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674656,,,test,hesrt,samples/GSE283945/GSM8674656,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8674657,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3812,36945,counts,pixel,4.181194495233687,platform_constant,True,H&E,4.181194495233687,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674657,,,test,hesrt,samples/GSE283945/GSM8674657,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.61, ""life_stage"": 1.0}",, GSM8674658,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,,,normal,luna,healthy,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4619,36945,counts,pixel,4.479912358574608,platform_constant,True,H&E,4.479912358574608,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674658,,,test,hesrt,samples/GSE283945/GSM8674658,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8674660,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3928,36945,counts,pixel,4.4814543143129,platform_constant,True,H&E,4.4814543143129,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674660,,,test,hesrt,samples/GSE283945/GSM8674660,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.74, ""life_stage"": 1.0}",, +GSM8674660,GSE283945,GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0000160,intestine,intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,CD,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3928,36945,counts,pixel,4.4814543143128995,platform_constant,True,H&E,4.4814543143128995,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41224999,,GSM8674660,,,test,hesrt,samples/GSE283945/GSM8674660,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.74, ""life_stage"": 1.0}",, GSM8674927,GSE283959,GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3894,31253,counts,pixel,4.248884419718703,platform_constant,True,H&E,4.248884419718703,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40991701,,GSM8674927,,,train,hesrt,samples/GSE283959/GSM8674927,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8674928,GSE283959,GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0018177,glioblastoma,disease,luna,glioblastoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2116,31253,counts,pixel,3.9445902670833455,platform_constant,True,H&E,3.9445902670833455,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40991701,,GSM8674928,,,train,hesrt,samples/GSE283959/GSM8674928,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM8674929,GSE283959,GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0021042,glioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2263,31253,counts,pixel,3.944590267083312,platform_constant,True,H&E,3.944590267083312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40991701,,GSM8674929,,,train,hesrt,samples/GSE283959/GSM8674929,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.34, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM8674930,GSE283959,GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0021042,glioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2255,31253,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40991701,,GSM8674930,,,train,hesrt,samples/GSE283959/GSM8674930,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.35000000000000003, ""disease_status"": 0.44, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM8675019,GSE283967,GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,,embryonic,age rule: post-conception / gestational weeks,embryonic,8.4 post-conception weeks,male,male,GSE283967:HEF_DN_F0000476,HEF_DN_F0000476,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2161,36601,counts,pixel,0.4310304787039547,platform_constant,True,H&E,0.5000046197883382,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39927812,10.1242/dev.204555,GSM8675019,,,train,hesrt,samples/GSE283967/GSM8675019,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.45}",life_stage,low_confidence_annotation GSM8675020,GSE283967,GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,,embryonic,age rule: post-conception / gestational weeks,embryonic,8.4 post-conception weeks,male,male,GSE283967:HEF_DN_F0000476,HEF_DN_F0000476,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1900,36601,counts,pixel,0.4310304787039547,platform_constant,True,H&E,0.49999349770685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39927812,10.1242/dev.204555,GSM8675020,,,train,hesrt,samples/GSE283967/GSM8675020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.6000000000000001}",, -GSM8675021,GSE283967,GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,,fetal,age rule: post-conception / gestational weeks,fetal,9.7 post-conception weeks,female,female,GSE283967:HEF_DN_F0000298,HEF_DN_F0000298,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2318,36601,counts,pixel,3.903130592631004,platform_constant,True,H&E,3.903130592631004,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39927812,10.1242/dev.204555,GSM8675021,,,train,hesrt,samples/GSE283967/GSM8675021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.97}",, +GSM8675021,GSE283967,GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,,,normal,luna,,,fetal,age rule: post-conception / gestational weeks,fetal,9.7 post-conception weeks,female,female,GSE283967:HEF_DN_F0000298,HEF_DN_F0000298,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2318,36601,counts,pixel,3.9031305926310043,platform_constant,True,H&E,3.9031305926310043,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39927812,10.1242/dev.204555,GSM8675021,,,train,hesrt,samples/GSE283967/GSM8675021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.97}",, GSM8675811,GSE284005,GSE284005,A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0002316,white matter,"White Matter, fresh frozen",primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,adult,age rule: bare number read as years,adult,54,male,Male,,,fresh frozen,fresh frozen,MERFISH/MERSCOPE,release v3,MERFISH,imaging-based,MERFISH,,,cell,26082,500,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8675811,,,train,sda-all,samples/GSE284005/GSM8675811,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8675812,GSE284005,GSE284005,A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0002316,white matter,"White Matter, fresh frozen",primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,adult,age rule: bare number read as years,adult,53,female,Female,,,fresh frozen,fresh frozen,MERFISH/MERSCOPE,release v3,MERFISH,imaging-based,MERFISH,,,cell,31404,500,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8675812,,,train,sda-all,samples/GSE284005/GSM8675812,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8675813,GSE284005,GSE284005,A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0002316,white matter,"White Matter, fresh frozen",primary tissue,MONDO:0005301,multiple sclerosis,disease,luna,multiple sclerosis,,adult,age rule: bare number read as years,adult,47,female,Female,,,fresh frozen,fresh frozen,MERFISH/MERSCOPE,release v3,MERFISH,imaging-based,MERFISH,,,cell,31244,500,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM8675813,,,train,sda-all,samples/GSE284005/GSM8675813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6398,7 +6398,7 @@ GSM8682763,GSE284353,GSE284353,Comprehensive sequencing of the lung neuroimmune GSM8682764,GSE284353,GSE284353,Comprehensive sequencing of the lung neuroimmune landscape in response to asthmatic induction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0005362,vagus X ganglion,Vagal Ganglia,primary tissue,MONDO:0004979,asthma,disease,luna,,,adult,luna,adult,Adult,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,mMulti_91g,xenium-1.7.1.0,cell,3344,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896935550365,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40181989,,GSM8682764,,,train,sda-all,samples/GSE284353/GSM8682764,sda-tissue-disease-2.5,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8682765,GSE284353,GSE284353,Comprehensive sequencing of the lung neuroimmune landscape in response to asthmatic induction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0005362,vagus X ganglion,Vagal Ganglia,primary tissue,MONDO:0004979,asthma,disease,luna,,,adult,luna,adult,Adult,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,mMulti_91g,xenium-1.7.1.0,cell,2791,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000154469312097,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40181989,,GSM8682765,,,train,sda-all,samples/GSE284353/GSM8682765,sda-tissue-disease-2.5,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8682766,GSE284353,GSE284353,Comprehensive sequencing of the lung neuroimmune landscape in response to asthmatic induction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0005362,vagus X ganglion,Vagal Ganglia,primary tissue,MONDO:0004979,asthma,disease,luna,,,adult,luna,adult,Adult,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,mMulti_91g,xenium-1.7.1.0,cell,3959,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000343218012081,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40181989,,GSM8682766,,,train,sda-all,samples/GSE284353/GSM8682766,sda-tissue-disease-2.5,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8686962,GSE284571,GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,prostate,primary tissue,,,normal,luna,,Intact,adult,age rule: age with unit,not stated,10–18 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2690,19465,counts,pixel,4.762285342288664,platform_constant,True,H&E,4.762285342288664,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39763898;40974890,,GSM8686962,,,train,hesrt,samples/GSE284571/GSM8686962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8686962,GSE284571,GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,prostate,primary tissue,,,normal,luna,,Intact,adult,age rule: age with unit,not stated,10–18 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2690,19465,counts,pixel,4.7622853422886635,platform_constant,True,H&E,4.7622853422886635,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39763898;40974890,,GSM8686962,,,train,hesrt,samples/GSE284571/GSM8686962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8686963,GSE284571,GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,prostate,primary tissue,,,normal,luna,,Intact,adult,age rule: age with unit,not stated,10–18 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2433,19465,counts,pixel,4.898061586657095,platform_constant,True,H&E,4.898061586657095,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39763898;40974890,,GSM8686963,,,train,hesrt,samples/GSE284571/GSM8686963,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8686964,GSE284571,GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,prostate,primary tissue,,,normal,luna,,Intact,adult,age rule: age with unit,not stated,10–18 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2668,19465,counts,pixel,4.781811593608017,platform_constant,True,H&E,4.781811593608017,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39763898;40974890,,GSM8686964,,,train,hesrt,samples/GSE284571/GSM8686964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8686965,GSE284571,GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,prostate,primary tissue,,,normal,luna,,Intact,adult,age rule: age with unit,not stated,10–18 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2770,19465,counts,pixel,4.748223514450942,platform_constant,True,H&E,4.748223514450942,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39763898;40974890,,GSM8686965,,,train,hesrt,samples/GSE284571/GSM8686965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -6428,7 +6428,7 @@ GSM8689389,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and GSM8689390,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,normal,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4173,32293,counts,pixel,4.230873107665135,platform_constant,True,H&E,4.230873107665135,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689390,,,train,hesrt,samples/GSE284625/GSM8689390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.13, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8689391,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,perturbation,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3199,32293,counts,pixel,4.131459267345747,platform_constant,True,H&E,4.131459267345747,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689391,,,train,hesrt,samples/GSE284625/GSM8689391,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.13, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8689392,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,normal,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2478,32293,counts,pixel,4.222856130949868,platform_constant,True,H&E,4.222856130949868,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689392,,,train,hesrt,samples/GSE284625/GSM8689392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.2, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8689393,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,perturbation,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3522,32293,counts,pixel,4.231514552644343,platform_constant,True,H&E,4.231514552644343,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689393,,,train,hesrt,samples/GSE284625/GSM8689393,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8689393,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,perturbation,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3522,32293,counts,pixel,4.2315145526443425,platform_constant,True,H&E,4.2315145526443425,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689393,,,train,hesrt,samples/GSE284625/GSM8689393,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8689394,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,perturbation,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3281,32293,counts,pixel,4.503460481254349,platform_constant,True,H&E,4.503460481254349,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689394,,,train,hesrt,samples/GSE284625/GSM8689394,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8689395,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,perturbation,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2841,32293,counts,pixel,4.231835348076849,platform_constant,True,H&E,4.231835348076849,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689395,,,train,hesrt,samples/GSE284625/GSM8689395,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8689396,GSE284625,GSE284625,spatial transcriptomics of mouse brain before and after activation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,mouse brain,primary tissue,,,perturbation,luna,,activated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2852,32293,counts,pixel,4.231514552644333,platform_constant,True,H&E,4.231514552644333,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42000729,,GSM8689396,,,train,hesrt,samples/GSE284625/GSM8689396,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -6449,10 +6449,10 @@ GSM8690713,GSE284695,GSE284695,Obesity-mediated intratumoral innervation increas GSM8691718,GSE284741,GSE284741,The XCL1-XCR1 axis supports intestinal tissue residency and anti-tumor immunity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0002108,small intestine,Small Intestine,primary tissue,MONDO:0005550,infectious disease,disease,luna,,LCMV infection and P14 CD8 T cell transfer. 500 ng/mouse of DT was administered by intraperitoneal injection days 4-7 after infection.,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219239,350,counts,um,1.0,verified,False,,,ABSENT,ABSENT,UNRESOLVED,,,VERIFIED,,,,39841133,,GSM8691718,,,train,sda-all,samples/GSE284741/GSM8691718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8691759,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51820,7280,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000206334468172,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691759,,,train,sda-all,samples/GSE284747/GSM8691759,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8691760,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55811,7025,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000011474205984,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691760,,,train,sda-all,samples/GSE284747/GSM8691760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8691761,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,96419,8261,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999906064477342,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691761,,,train,sda-all,samples/GSE284747/GSM8691761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8691761,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,96419,8261,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999060644773424,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691761,,,train,sda-all,samples/GSE284747/GSM8691761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8691762,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64442,6929,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691762,,,train,sda-all,samples/GSE284747/GSM8691762,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.85, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8691763,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874,acute myeloid leukemia,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26713,6227,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041118421052,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691763,,,train,sda-all,samples/GSE284747/GSM8691763,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8691764,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874,acute myeloid leukemia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,211889,8082,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999987104095738,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691764,,,train,sda-all,samples/GSE284747/GSM8691764,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8691764,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874,acute myeloid leukemia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,211889,8082,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999871040957383,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691764,,,train,sda-all,samples/GSE284747/GSM8691764,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8691765,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,80583,6377,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999823217442545,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691765,,,train,sda-all,samples/GSE284747/GSM8691765,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8691766,GSE284747,GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,105123,6675,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999844870380585,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8691766,,,train,sda-all,samples/GSE284747/GSM8691766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8694491,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3258,20551,counts,pixel,3.984330669085371,platform_constant,True,H&E,3.984330669085371,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694491,,,train,hesrt,samples/GSE284989/GSM8694491,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, @@ -6462,18 +6462,18 @@ GSM8694494,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism a GSM8694495,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2535,20551,counts,pixel,4.030366853653612,platform_constant,True,H&E,4.030366853653612,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694495,,,train,hesrt,samples/GSE284989/GSM8694495,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM8694496,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1978,20551,counts,pixel,3.984457031277133,platform_constant,True,H&E,3.984457031277133,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694496,,,train,hesrt,samples/GSE284989/GSM8694496,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694497,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2593,20551,counts,pixel,4.088594601140091,platform_constant,True,H&E,4.088594601140091,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694497,,,train,hesrt,samples/GSE284989/GSM8694497,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.99}",, -GSM8694498,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3241,20551,counts,pixel,3.924861448162,platform_constant,True,H&E,3.924861448162,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694498,,,train,hesrt,samples/GSE284989/GSM8694498,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8694498,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3241,20551,counts,pixel,3.9248614481619994,platform_constant,True,H&E,3.9248614481619994,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694498,,,train,hesrt,samples/GSE284989/GSM8694498,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694499,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2918,20551,counts,pixel,3.940113919699788,platform_constant,True,H&E,3.940113919699788,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694499,,,train,hesrt,samples/GSE284989/GSM8694499,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694500,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2435,20551,counts,pixel,4.046199298899556,platform_constant,True,H&E,4.046199298899556,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694500,,,train,hesrt,samples/GSE284989/GSM8694500,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694501,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3211,20551,counts,pixel,4.024355806277597,platform_constant,True,H&E,4.024355806277597,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694501,,,train,hesrt,samples/GSE284989/GSM8694501,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694502,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3484,20551,counts,pixel,4.035719409050836,platform_constant,True,H&E,4.035719409050836,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694502,,,train,hesrt,samples/GSE284989/GSM8694502,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8694503,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1772,20551,counts,pixel,3.929480948967071,platform_constant,True,H&E,3.929480948967071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694503,,,train,hesrt,samples/GSE284989/GSM8694503,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8694504,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2590,20551,counts,pixel,3.929480948967071,platform_constant,True,H&E,3.929480948967071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694504,,,train,hesrt,samples/GSE284989/GSM8694504,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8694503,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1772,20551,counts,pixel,3.9294809489670706,platform_constant,True,H&E,3.9294809489670706,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694503,,,train,hesrt,samples/GSE284989/GSM8694503,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8694504,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2590,20551,counts,pixel,3.9294809489670706,platform_constant,True,H&E,3.9294809489670706,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694504,,,train,hesrt,samples/GSE284989/GSM8694504,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694505,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3815,20551,counts,pixel,3.946962314984007,platform_constant,True,H&E,3.946962314984007,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694505,,,train,hesrt,samples/GSE284989/GSM8694505,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8694506,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3530,20551,counts,pixel,3.909113978762585,platform_constant,True,H&E,3.909113978762585,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694506,,,train,hesrt,samples/GSE284989/GSM8694506,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8694506,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3530,20551,counts,pixel,3.9091139787625853,platform_constant,True,H&E,3.9091139787625853,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694506,,,train,hesrt,samples/GSE284989/GSM8694506,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694507,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2527,20551,counts,pixel,4.3200619456568665,platform_constant,True,H&E,4.3200619456568665,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694507,,,train,hesrt,samples/GSE284989/GSM8694507,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8694508,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1818,20551,counts,pixel,3.929480948967071,platform_constant,True,H&E,3.929480948967071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694508,,,train,hesrt,samples/GSE284989/GSM8694508,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.89, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8694509,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1980,20551,counts,pixel,3.941645468201705,platform_constant,True,H&E,3.941645468201705,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694509,,,train,hesrt,samples/GSE284989/GSM8694509,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8694508,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1818,20551,counts,pixel,3.9294809489670706,platform_constant,True,H&E,3.9294809489670706,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694508,,,train,hesrt,samples/GSE284989/GSM8694508,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.89, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8694509,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1980,20551,counts,pixel,3.9416454682017052,platform_constant,True,H&E,3.9416454682017052,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694509,,,train,hesrt,samples/GSE284989/GSM8694509,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694510,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1947,20551,counts,pixel,3.925303821185173,platform_constant,True,H&E,3.925303821185173,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694510,,,train,hesrt,samples/GSE284989/GSM8694510,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694511,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,aPD-1,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2965,20551,counts,pixel,3.9506199424562256,platform_constant,True,H&E,3.9506199424562256,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694511,,,train,hesrt,samples/GSE284989/GSM8694511,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8694512,GSE284989,GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,MC38 Tumor,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,IgG Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2007,20551,counts,pixel,4.025618747283734,platform_constant,True,H&E,4.025618747283734,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40171265,,GSM8694512,,,train,hesrt,samples/GSE284989/GSM8694512,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 0.74, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -6483,7 +6483,7 @@ GSM8695243,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy GSM8695244,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Virgin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,154693,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000128945739634,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695244,,,train,sda-all,samples/GSE285027/GSM8695244,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8695245,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Pregnant (day 7),adult,luna,adult,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,290140,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499992892220212,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695245,,,train,sda-all,samples/GSE285027/GSM8695245,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.64}",, GSM8695246,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Lactating (day 7),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,321746,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999976217656013,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695246,,,train,sda-all,samples/GSE285027/GSM8695246,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.79}",, -GSM8695247,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Virgin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,180241,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999991401843444,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695247,,,train,sda-all,samples/GSE285027/GSM8695247,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8695247,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Virgin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,180241,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999914018434444,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695247,,,train,sda-all,samples/GSE285027/GSM8695247,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8695248,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Pregnant (day 7),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,239458,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000055718288335,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695248,,,train,sda-all,samples/GSE285027/GSM8695248,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.5}",life_stage,low_confidence_annotation GSM8695249,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Lactating (day 7),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,390141,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948328424534,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695249,,,train,sda-all,samples/GSE285027/GSM8695249,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.76}",, GSM8695250,GSE285027,GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Virgin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_300g,xenium-2.0.0.10,cell,252319,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103092783506,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40112802,,GSM8695250,,,train,sda-all,samples/GSE285027/GSM8695250,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, @@ -6518,7 +6518,7 @@ GSM8700486,GSE285304,GSE285304,Spatially resolved m6A profiling using m6A-ARTR-D GSM8700487,GSE285304,GSE285304,Spatially resolved m6A profiling using m6A-ARTR-DBiT [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,m6A-ARTR-DBiT protocol,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,release v3,m6A-ARTR-DBiT,sequencing-based,m6A-ARTR-DBiT,,,spot,2401,15862,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42265211,,GSM8700487,,,train,sda-all,samples/GSE285304/GSM8700487,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8700488,GSE285304,GSE285304,Spatially resolved m6A profiling using m6A-ARTR-DBiT [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,m6A-ARTR-DBiT protocol,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,release v3,m6A-ARTR-DBiT,sequencing-based,m6A-ARTR-DBiT,,,spot,2500,15178,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42265211,,GSM8700488,,,train,sda-all,samples/GSE285304/GSM8700488,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9438232,GSE285304,GSE285304,Spatially resolved m6A profiling using m6A-ARTR-DBiT [spatial],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,embryo (whole),luna,UBERON:0000922,embryo,Embryo E11,whole embryo/organism,,,normal,luna,,DBiT-seq protocol,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,release v3,DBiT-seq,sequencing-based,DBiT-seq,,,spot,1776,17021,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42265211,,GSM9438232,,,train,sda-all,samples/GSE285304/GSM9438232,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8701050,GSE285341,GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,LLC1 cancer tissue in syngeneic mouse model,xenograft,MONDO:0021117;MONDO:0004992,lung neoplasm;cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,198792,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999880588460068,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,40172969,,GSM8701050,,,train,sda-all,samples/GSE285341/GSM8701050,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM8701050,GSE285341,GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,LLC1 cancer tissue in syngeneic mouse model,xenograft,MONDO:0021117;MONDO:0004992,lung neoplasm;cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,198792,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998805884600683,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,40172969,,GSM8701050,,,train,sda-all,samples/GSE285341/GSM8701050,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8701051,GSE285341,GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,LLC1 cancer tissue in syngeneic mouse model,xenograft,MONDO:0021117;MONDO:0004992,lung neoplasm;cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,397786,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000155193819837,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,40172969,,GSM8701051,,,train,sda-all,samples/GSE285341/GSM8701051,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8701052,GSE285341,GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,LLC1 cancer tissue in syngeneic mouse model,xenograft,MONDO:0021117;MONDO:0004992,lung neoplasm;cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,342508,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000044341965235,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,40172969,,GSM8701052,,,train,sda-all,samples/GSE285341/GSM8701052,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8701053,GSE285341,GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,LLC1 cancer tissue in syngeneic mouse model,xenograft,MONDO:0021117;MONDO:0004992,lung neoplasm;cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,217301,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000075165363801,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,40172969,,GSM8701053,,,train,sda-all,samples/GSE285341/GSM8701053,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -6529,7 +6529,7 @@ GSM8703566,GSE285505,GSE285505,Fibroblast-Derived Thrombospondin 2 Shapes the Im GSM8707234,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,bladder cancer,tumour tissue,MONDO:0004992,cancer,disease,luna,bladder cancer,tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4293,18085,counts,pixel,6.594917248478929,platform_constant,True,H&E,6.594917248478929,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707234,,,val,hesrt,samples/GSE285715/GSM8707234,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8707235,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,bladder cancer,tumour tissue,MONDO:0004992,cancer,disease,luna,bladder cancer,tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3989,18085,counts,pixel,4.766761671783493,platform_constant,True,H&E,4.766761671783493,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707235,,,val,hesrt,samples/GSE285715/GSM8707235,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8707236,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,bladder cancer,tumour tissue,MONDO:0004992,cancer,disease,luna,bladder cancer,tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3344,18085,counts,pixel,4.917109735769261,platform_constant,True,H&E,4.917109735769261,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707236,,,val,hesrt,samples/GSE285715/GSM8707236,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8707237,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Normal tissue adjacent to bladder cancer,primary tissue,,,normal,luna,bladder cancer,normal,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1417,18085,counts,pixel,3.390729099486236,platform_constant,True,H&E,3.390729099486236,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707237,,,val,hesrt,samples/GSE285715/GSM8707237,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,normal_but_disease_text;low_confidence_annotation +GSM8707237,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Normal tissue adjacent to bladder cancer,primary tissue,,,normal,luna,bladder cancer,normal,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1417,18085,counts,pixel,3.3907290994862356,platform_constant,True,H&E,3.3907290994862356,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707237,,,val,hesrt,samples/GSE285715/GSM8707237,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,normal_but_disease_text;low_confidence_annotation GSM8707238,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Normal tissue adjacent to bladder cancer,primary tissue,,,normal,luna,bladder cancer,normal,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1811,18085,counts,pixel,7.266297203166238,platform_constant,True,H&E,7.266297203166238,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707238,,,val,hesrt,samples/GSE285715/GSM8707238,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.44, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,normal_but_disease_text;low_confidence_annotation GSM8707239,GSE285715,GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Normal tissue adjacent to bladder cancer,primary tissue,,,normal,luna,bladder cancer,normal,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2510,18085,counts,pixel,6.063000394580036,platform_constant,True,H&E,6.063000394580036,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,10.21203/rs.3.rs-5894269/v1,GSM8707239,,,val,hesrt,samples/GSE285715/GSM8707239,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.96, ""life_stage"": 1.0}",,normal_but_disease_text GSM8711459,GSE285858,GSE285858,Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,"Brain, male, postnatal day 0",primary tissue,,,normal,luna,,Non-transgenic (NT),neonatal or infant,luna,neonatal or infant,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,728,32285,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.281017027089828,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,40482637;41456279,,GSM8711459,,,train,sda-all,samples/GSE285858/GSM8711459,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6552,17 +6552,17 @@ GSM8714492,GSE285984,GSE285984,Multi-omic characterization of human sural nerves GSM8714493,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,,,disease,luna,CIAP,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16248,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041349652663,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714493,,,val,sda-all,samples/GSE285984/GSM8714493,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8714494,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,MONDO:0006702;MONDO:0100169,"chronic inflammatory demyelinating polyradiculoneuropathy;polyneuropathy, inflammatory demyelinating, chronic",disease,luna,CIDP,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20286,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051793536167,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714494,,,val,sda-all,samples/GSE285984/GSM8714494,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8714495,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,,,disease,luna,CIAP,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6411,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000193718359335,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714495,,,val,sda-all,samples/GSE285984/GSM8714495,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8714496,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,,,normal,luna,CTRL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4784,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999794619018278,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714496,,,val,sda-all,samples/GSE285984/GSM8714496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",,normal_but_disease_text +GSM8714496,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,,,normal,luna,CTRL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4784,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997946190182785,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714496,,,val,sda-all,samples/GSE285984/GSM8714496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",,normal_but_disease_text GSM8714497,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,,,normal,luna,CTRL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,9899,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000090336568243,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714497,,,val,sda-all,samples/GSE285984/GSM8714497,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",,normal_but_disease_text GSM8714498,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,MONDO:0001824,polyneuropathy,disease,luna,VN,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6858,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000206213912566,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714498,,,val,sda-all,samples/GSE285984/GSM8714498,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8714499,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,MONDO:0001824,polyneuropathy,disease,luna,Vn,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7592,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999780701754385,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714499,,,val,sda-all,samples/GSE285984/GSM8714499,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8714499,GSE285984,GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0015488,sural nerve,sural nerve,primary tissue,MONDO:0001824,polyneuropathy,disease,luna,Vn,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7592,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997807017543855,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40849297,,GSM8714499,,,val,sda-all,samples/GSE285984/GSM8714499,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8714610,GSE285990,GSE285990,Chemotherapy triggers immune evasion by fostering LEPR+ Kupffer cell differentiation in liver metastases [RNA-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,liver metastases,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,,FOLFOX regimen for 5 days,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,57446,37885,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41687606,,GSM8714610,,,train,sda-all,samples/GSE285990/GSM8714610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8714611,GSE285990,GSE285990,Chemotherapy triggers immune evasion by fostering LEPR+ Kupffer cell differentiation in liver metastases [RNA-seq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,liver metastases,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,,FOLFOX regimen for 15 days,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,51464,32171,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41687606,,GSM8714611,,,train,sda-all,samples/GSE285990/GSM8714611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM8714858,GSE286008,GSE286008,Spatial transcriptomics reveals the immunomodulatory activities of an oncolytic adenovirus armed with a type I interferon in a replication-permissive immunocompetent pancreatic cancer model,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,Mesocricetus auratus,pancreas,uberon_chain,UBERON:0001264,pancreas,HP-1 pancreatic cancer cell line-derived tumor,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,OAd-Luc,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2556,18296,counts,pixel,4.046779493503515,platform_constant,True,H&E,4.046779493503515,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8714858,,,train,hesrt,samples/GSE286008/GSM8714858,sda-tissue-disease-2.4,"{""organ"": 0.91, ""sample_kind"": 0.64, ""disease_status"": 0.93, ""uberon"": 0.6000000000000001, ""life_stage"": 0.92}",, GSM8714859,GSE286008,GSE286008,Spatial transcriptomics reveals the immunomodulatory activities of an oncolytic adenovirus armed with a type I interferon in a replication-permissive immunocompetent pancreatic cancer model,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,Mesocricetus auratus,pancreas,uberon_chain,UBERON:0001264,pancreas,HP-1 pancreatic cancer cell line-derived tumor,xenograft,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,OAd-IFN,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2910,18296,counts,pixel,4.522564505967935,platform_constant,True,H&E,4.522564505967935,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8714859,,,train,hesrt,samples/GSE286008/GSM8714859,sda-tissue-disease-2.4,"{""organ"": 0.79, ""sample_kind"": 0.5700000000000001, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8714860,GSE286008,GSE286008,Spatial transcriptomics reveals the immunomodulatory activities of an oncolytic adenovirus armed with a type I interferon in a replication-permissive immunocompetent pancreatic cancer model,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,Mesocricetus auratus,pancreas,uberon_chain,UBERON:0001264,pancreas,HP-1 pancreatic cancer cell line-derived tumor,xenograft,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,OAd-IFN,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3106,18296,counts,pixel,4.252350734411144,platform_constant,True,H&E,4.252350734411144,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8714860,,,train,hesrt,samples/GSE286008/GSM8714860,sda-tissue-disease-2.4,"{""organ"": 0.9, ""sample_kind"": 0.52, ""disease_status"": 0.96, ""uberon"": 0.96, ""life_stage"": 0.88}",sample_kind,low_confidence_annotation GSM8714861,GSE286008,GSE286008,Spatial transcriptomics reveals the immunomodulatory activities of an oncolytic adenovirus armed with a type I interferon in a replication-permissive immunocompetent pancreatic cancer model,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,Mesocricetus auratus,pancreas,uberon_chain,UBERON:0001264,pancreas,HP-1 pancreatic cancer cell line-derived tumor,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,OAd-IFN,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3722,18296,counts,pixel,4.573555569648775,platform_constant,True,H&E,4.573555569648775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8714861,,,train,hesrt,samples/GSE286008/GSM8714861,sda-tissue-disease-2.4,"{""organ"": 0.79, ""sample_kind"": 0.64, ""disease_status"": 0.96, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM8717006,GSE286051,GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidneys,primary tissue,,,normal,luna,,,aged,age rule: age with unit,adult,92 weeks,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,397721,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999912907159031,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8717006,,,train,sda-all,samples/GSE286051/GSM8717006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, +GSM8717006,GSE286051,GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidneys,primary tissue,,,normal,luna,,,aged,age rule: age with unit,adult,92 weeks,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,397721,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999129071590315,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8717006,,,train,sda-all,samples/GSE286051/GSM8717006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM8717007,GSE286051,GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidneys,primary tissue,,,normal,luna,,,aged,age rule: age with unit,adult,92 weeks,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,421140,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103391232423,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8717007,,,train,sda-all,samples/GSE286051/GSM8717007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.93}",, GSM8717008,GSE286051,GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidneys,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,12 weeks,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,336623,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000130976672366,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8717008,,,train,sda-all,samples/GSE286051/GSM8717008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8717009,GSE286051,GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,kidneys,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,12 weeks,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,320131,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499989054290718,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8717009,,,train,sda-all,samples/GSE286051/GSM8717009,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6596,9 +6596,9 @@ GSM8721641,GSE286250,GSE286250,Decoding transcriptional identity during Neuron-A GSM8721642,GSE286250,GSE286250,Decoding transcriptional identity during Neuron-Astroglia Cell Fate driven by RAR-specific agonists [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain organoid,organoid,,,perturbation,luna,,BMS753 (3 months),not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial transcriptomics,,,spot,469,20987,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,41255712,,GSM8721642,,,train,sda-all,samples/GSE286250/GSM8721642,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM8721643,GSE286250,GSE286250,Decoding transcriptional identity during Neuron-Astroglia Cell Fate driven by RAR-specific agonists [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain organoid,organoid,,,perturbation,luna,,BMS961+BMS641 (3 months),not stated,luna,not stated,,unknown,,,,,,ST (legacy),release v3,ST (legacy),sequencing-based,Spatial transcriptomics,,,spot,365,20800,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,41255712,,GSM8721643,,,train,sda-all,samples/GSE286250/GSM8721643,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8721777,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0001114,right lobe of liver,,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,7-12,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.6.0.8,cell,76708,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.50001315492746,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721777,,,train,sda-all,samples/GSE286254/GSM8721777,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.78, ""life_stage"": 1.0}",, -GSM8721778,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,7-12,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.6.0.8,cell,77666,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982766940097,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721778,,,train,sda-all,samples/GSE286254/GSM8721778,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8721778,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,7-12,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.6.0.8,cell,77666,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999827669400976,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721778,,,train,sda-all,samples/GSE286254/GSM8721778,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8721779,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,,primary tissue,MONDO:0006499,hamartoma,disease,luna,,,adult,age rule: bare number read as years,adult,38,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.5.0.3,cell,49666,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499993548720066,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721779,,,train,sda-all,samples/GSE286254/GSM8721779,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.79, ""disease_status"": 1.0, ""uberon"": 0.88, ""life_stage"": 1.0}",, -GSM8721780,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,38,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.5.0.3,cell,42255,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999855312112443,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721780,,,train,sda-all,samples/GSE286254/GSM8721780,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.58, ""life_stage"": 0.97}",uberon,low_confidence_annotation +GSM8721780,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,38,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.5.0.3,cell,42255,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998553121124434,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721780,,,train,sda-all,samples/GSE286254/GSM8721780,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.58, ""life_stage"": 0.97}",uberon,low_confidence_annotation GSM8721781,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,38,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.5.0.3,cell,55698,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000047006618532,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721781,,,train,sda-all,samples/GSE286254/GSM8721781,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.67, ""life_stage"": 0.84}",, GSM8721782,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,47,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.7.1.0,cell,142659,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000018268621815,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721782,,,train,sda-all,samples/GSE286254/GSM8721782,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.76, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8721783,GSE286254,GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0000353,parenchyma,,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,43,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_100g,xenium-1.6.0.8,cell,125967,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000143266475644,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8721783,,,train,sda-all,samples/GSE286254/GSM8721783,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 0.42, ""life_stage"": 0.99}",uberon,low_confidence_annotation @@ -6617,9 +6617,9 @@ GSM8728270,GSE286477,GSE286477,Dendritic Cell Immunotherapy with Homologous Anti GSM8728273,GSE286477,GSE286477,Dendritic Cell Immunotherapy with Homologous Antigenic Loading as Adjuvant Treatment for Glioblastoma: Phase I Trial Analysis [Spatial Transcriptome],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,glioblastoma,pretreatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1858,18087,counts,pixel,4.740454631399772,platform_constant,True,H&E,4.740454631399772,HESRT_HUMAN_REVIEW,,,summary_features_in_matrix,summary_features_in_matrix,human_visual_review,,,,,,CG-a625342a3f13,library_alias,GSM8728274;GSM8728275,train,hesrt,samples/GSE286477/GSM8728273,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8728276,GSE286477,GSE286477,Dendritic Cell Immunotherapy with Homologous Antigenic Loading as Adjuvant Treatment for Glioblastoma: Phase I Trial Analysis [Spatial Transcriptome],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,glioblastoma,posttreatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,470,18087,counts,pixel,4.740454631399772,platform_constant,True,H&E,4.740454631399772,HESRT_HUMAN_REVIEW,,,summary_features_in_matrix,summary_features_in_matrix,human_visual_review,,,,,,CG-134ac3fea6be,library_alias,GSM8728277;GSM8728278,train,hesrt,samples/GSE286477/GSM8728276,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, GSM8734558,GSE286935,GSE286935,Analysis of B cell neighborhoods via single cell spatial transcriptomics in head and neck cancer patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,head and neck,luna,UBERON:0006562,pharynx,Pharynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CoSMX,,,cell,103159,979,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,39970232,,GSM8734558,,,train,sda-all,samples/GSE286935/GSM8734558,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8734926,GSE286964,GSE286964,Somatic mutations distinguish melanocyte subpopulations in human skin,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Non-cancerous skin,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,63 years,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,148741,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499987821512081,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8734926,,,train,sda-all,samples/GSE286964/GSM8734926,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.71, ""life_stage"": 1.0}",, +GSM8734926,GSE286964,GSE286964,Somatic mutations distinguish melanocyte subpopulations in human skin,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Non-cancerous skin,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,63 years,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,148741,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998782151208104,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8734926,,,train,sda-all,samples/GSE286964/GSM8734926,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.71, ""life_stage"": 1.0}",, GSM8734927,GSE286964,GSE286964,Somatic mutations distinguish melanocyte subpopulations in human skin,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Non-cancerous skin,primary tissue,,,normal,luna,,,adult,age rule: age in years,adult,63 years,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,145489,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077475337017,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8734927,,,train,sda-all,samples/GSE286964/GSM8734927,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.8, ""life_stage"": 1.0}",, -GSM8741261,GSE287202,GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (coronal section),primary tissue,,,normal,luna,,aged 28 months,aged,age rule: age with unit,aged,28 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3680,19465,counts,pixel,7.022417455752152,platform_constant,True,H&E,7.022417455752152,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40563967,,GSM8741261,,,test,hesrt,samples/GSE287202/GSM8741261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8741261,GSE287202,GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (coronal section),primary tissue,,,normal,luna,,aged 28 months,aged,age rule: age with unit,aged,28 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3680,19465,counts,pixel,7.0224174557521515,platform_constant,True,H&E,7.0224174557521515,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40563967,,GSM8741261,,,test,hesrt,samples/GSE287202/GSM8741261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8741262,GSE287202,GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (coronal section),primary tissue,,,normal,luna,,aged 28 months,aged,age rule: age with unit,aged,28 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3570,19465,counts,pixel,6.951251719262127,platform_constant,True,H&E,6.951251719262127,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40563967,,GSM8741262,,,test,hesrt,samples/GSE287202/GSM8741262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8741263,GSE287202,GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (coronal section),primary tissue,,,normal,luna,,adult 12-15 weeks,adult,age rule: age with unit,adult,12–15 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2919,19465,counts,pixel,4.243157726241051,platform_constant,True,H&E,4.243157726241051,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40563967,,GSM8741263,,,test,hesrt,samples/GSE287202/GSM8741263,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 0.93}",, GSM8741264,GSE287202,GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (coronal section),primary tissue,,,normal,luna,,adult 12-15 weeks,adult,age rule: age with unit,adult,12–15 weeks,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3261,19465,counts,pixel,4.243157726241051,platform_constant,True,H&E,4.243157726241051,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40563967,,GSM8741264,,,test,hesrt,samples/GSE287202/GSM8741264,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",, @@ -6636,16 +6636,16 @@ GSM8745173,GSE287384,GSE287384,Gas6-Axl signaling drives oral regenerative wound GSM8745174,GSE287384,GSE287384,Gas6-Axl signaling drives oral regenerative wound repair,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,perturbation,luna,,POD4,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1141,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.784592540135621,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40601775,,GSM8745174,,,train,sda-all,samples/GSE287384/GSM8745174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8745175,GSE287384,GSE287384,Gas6-Axl signaling drives oral regenerative wound repair,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,oral cavity,luna,UBERON:0003729,mouth mucosa,Oral Mucosa,primary tissue,,,perturbation,luna,,POD4,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,430,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.785507439696275,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40601775,,GSM8745175,,,train,sda-all,samples/GSE287384/GSM8745175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8746067,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3124,37082,counts,pixel,15.635177205572653,platform_constant,True,H&E,15.635177205572653,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746067,,,test,hesrt,samples/GSE287459/GSM8746067,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8746068,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3153,37082,counts,pixel,10.727272564218111,platform_constant,True,H&E,10.727272564218111,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746068,,,test,hesrt,samples/GSE287459/GSM8746068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8746069,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3813,37082,counts,pixel,9.775140255181537,platform_constant,True,H&E,9.775140255181537,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746069,,,test,hesrt,samples/GSE287459/GSM8746069,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8746068,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3153,37082,counts,pixel,10.727272564218113,platform_constant,True,H&E,10.727272564218113,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746068,,,test,hesrt,samples/GSE287459/GSM8746068,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8746069,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3813,37082,counts,pixel,9.775140255181535,platform_constant,True,H&E,9.775140255181535,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746069,,,test,hesrt,samples/GSE287459/GSM8746069,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8746070,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4007,37082,counts,pixel,11.614647182315492,platform_constant,True,H&E,11.614647182315492,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746070,,,test,hesrt,samples/GSE287459/GSM8746070,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8746071,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2421,37082,counts,pixel,15.061177085665513,platform_constant,True,H&E,15.061177085665513,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746071,,,test,hesrt,samples/GSE287459/GSM8746071,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8746072,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2365,37082,counts,pixel,10.320081769890296,platform_constant,True,H&E,10.320081769890296,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746072,,,test,hesrt,samples/GSE287459/GSM8746072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8746072,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2365,37082,counts,pixel,10.320081769890297,platform_constant,True,H&E,10.320081769890297,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746072,,,test,hesrt,samples/GSE287459/GSM8746072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8746073,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4743,37082,counts,pixel,9.554020222913394,platform_constant,True,H&E,9.554020222913394,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746073,,,test,hesrt,samples/GSE287459/GSM8746073,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8746074,GSE287459,GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,pulmonary LAM,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,lymphangioleiomyomatosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3811,37082,counts,pixel,11.73459613734569,platform_constant,True,H&E,11.73459613734569,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8746074,,,test,hesrt,samples/GSE287459/GSM8746074,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8746298,GSE287472,GSE287472,LUAD spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,LUAD,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,64420,1207,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42358378,,GSM8746298,,,train,sda-all,samples/GSE287472/GSM8746298,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8746576,GSE287499,GSE287499,Spatial transcriptomics of Slc16a1-Col2a1CreERT2 mouse spinal motion segments reveals compartment-distinct differences in the intervertebral disc,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001066,intervertebral disk,spinal motion segment,primary tissue,,,normal,luna,,CTR,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visium_hd,,,bin,140810,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.775132370875076,UNRESOLVED,ABSENT,ABSENT,,zero_count_observations,VERIFIED,PASS,,,42236482,,GSM8746576,,,train,sda-all,samples/GSE287499/GSM8746576,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.93, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8746577,GSE287499,GSE287499,Spatial transcriptomics of Slc16a1-Col2a1CreERT2 mouse spinal motion segments reveals compartment-distinct differences in the intervertebral disc,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001066,intervertebral disk,spinal motion segment,primary tissue,,,perturbation,luna,,cKO,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visium_hd,,,bin,141538,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.4359579495765877,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42236482,,GSM8746577,,,train,sda-all,samples/GSE287499/GSM8746577,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM8746577,GSE287499,GSE287499,Spatial transcriptomics of Slc16a1-Col2a1CreERT2 mouse spinal motion segments reveals compartment-distinct differences in the intervertebral disc,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001066,intervertebral disk,spinal motion segment,primary tissue,,,perturbation,luna,,cKO,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visium_hd,,,bin,141538,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.4359579495765873,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42236482,,GSM8746577,,,train,sda-all,samples/GSE287499/GSM8746577,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8756693,GSE287979,GSE287979,Systematic inference of super-resolution cell spatial profiles from histology images,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,stomach,luna,UBERON:0000945,stomach,Pre-cancerours gastric,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2182,18085,counts,pixel,6.777358882473598,platform_constant,True,H&E,6.777358882473598,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,39984438,,GSM8756693,,,train,hesrt,samples/GSE287979/GSM8756693,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8760701,GSE288178,GSE288178,Spatially resolving chromatin landscapes in formalin-fixed paraffin-embedded tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,human lymph node DLBCL,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,release v3,Patho-DBiT,sequencing-based,Patho-DBiT,,,spot,2500,31525,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42067542,,GSM8760701,,,train,sda-all,samples/GSE288178/GSM8760701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8761144,GSE288200,GSE288200,A rewired myeloid niche in spleen establishes stress erythropoiesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spleen,luna,UBERON:0002106,spleen,spleen,primary tissue,,,perturbation,luna,,IL18m-day5,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,1058,19479,counts,um,1.0,verified,True,H&E-like (heuristic),4.80136417387274,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8761144,,,train,sda-all,samples/GSE288200/GSM8761144,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6674,7 +6674,7 @@ GSM8768679,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ova GSM8768680,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0003889,fallopian tube,Fallopian tube,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IVB,aged,age rule: bare number read as years,aged,68,unknown,,GSE288483:Patient2,Patient2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1131,17943,counts,pixel,4.370101910188587,platform_constant,True,H&E,4.370101910188587,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768680,,,train,hesrt,samples/GSE288483/GSM8768680,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.9, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8768681,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IVA,adult,age rule: bare number read as years,adult,49,unknown,,GSE288483:Patient3,Patient3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2002,17943,counts,pixel,4.370101910188565,platform_constant,True,H&E,4.370101910188565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768681,,,train,hesrt,samples/GSE288483/GSM8768681,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8768682,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Vaginal stump,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IIIB,adult,age rule: bare number read as years,adult,56,unknown,,GSE288483:Patient4,Patient4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1393,17943,counts,pixel,4.370101910188565,platform_constant,True,H&E,4.370101910188565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768682,,,train,hesrt,samples/GSE288483/GSM8768682,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.56, ""disease_status"": 1.0, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM8768683,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneum,metastasis,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IIIC,aged,age rule: bare number read as years,aged,77,unknown,,GSE288483:Patient5,Patient5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1833,17943,counts,pixel,4.823318709277316,platform_constant,True,H&E,4.823318709277316,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768683,,,train,hesrt,samples/GSE288483/GSM8768683,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.64, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8768683,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0002358,peritoneum,Peritoneum,metastasis,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IIIC,aged,age rule: bare number read as years,aged,77,unknown,,GSE288483:Patient5,Patient5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1833,17943,counts,pixel,4.8233187092773155,platform_constant,True,H&E,4.8233187092773155,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768683,,,train,hesrt,samples/GSE288483/GSM8768683,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.64, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8768684,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IIIC,adult,age rule: bare number read as years,adult,38,unknown,,GSE288483:Patient6,Patient6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2026,17943,counts,pixel,4.822934330802071,platform_constant,True,H&E,4.822934330802071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768684,,,train,hesrt,samples/GSE288483/GSM8768684,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8768685,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IIIC,adult,age rule: bare number read as years,adult,56,unknown,,GSE288483:Patient7,Patient7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2119,17943,counts,pixel,4.822934330802071,platform_constant,True,H&E,4.822934330802071,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768685,,,train,hesrt,samples/GSE288483/GSM8768685,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8768686,GSE288483,GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,high-grade serous ovarian carcinoma,Stage IVB,adult,age rule: bare number read as years,adult,53,unknown,,GSE288483:Patient8,Patient8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3284,17943,counts,pixel,4.7962931398204285,platform_constant,True,H&E,4.7962931398204285,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41219363,,GSM8768686,,,train,hesrt,samples/GSE288483/GSM8768686,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -6684,7 +6684,7 @@ GSM8770955,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pul GSM8770956,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4443,37082,counts,pixel,4.549987889181838,platform_constant,True,H&E,4.549987889181838,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770956,,,val,hesrt,samples/GSE288607/GSM8770956,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8770957,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3923,37082,counts,pixel,4.266666754047988,platform_constant,True,H&E,4.266666754047988,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770957,,,val,hesrt,samples/GSE288607/GSM8770957,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8770958,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3332,37082,counts,pixel,4.117466871137884,platform_constant,True,H&E,4.117466871137884,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770958,,,val,hesrt,samples/GSE288607/GSM8770958,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8770959,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2285,37082,counts,pixel,1.190391840301395,platform_constant,True,H&E,1.190391840301395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770959,,,val,hesrt,samples/GSE288607/GSM8770959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8770959,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2285,37082,counts,pixel,1.1903918403013953,platform_constant,True,H&E,1.1903918403013953,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770959,,,val,hesrt,samples/GSE288607/GSM8770959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8770960,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,37082,counts,pixel,0.5473313553908552,platform_constant,True,H&E,0.5473313553908552,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,,,GSM8770960,,,val,hesrt,samples/GSE288607/GSM8770960,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8770961,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3043,37082,counts,pixel,0.502487185955009,platform_constant,True,H&E,0.502487185955009,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770961,,,val,hesrt,samples/GSE288607/GSM8770961,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8770962,GSE288607,GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0001708,pulmonary sarcoidosis,disease,luna,sarcoidosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4112,37082,counts,pixel,0.5024554702869775,platform_constant,True,H&E,0.5024554702869775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8770962,,,val,hesrt,samples/GSE288607/GSM8770962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6693,7 +6693,7 @@ GSM8772706,GSE288663,GSE288663,Role of progesterone receptor in inguinal hernia GSM8772707,GSE288663,GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0002378,muscle of abdomen,Lower abdominal muscle,primary tissue,,,perturbation,luna,,E2+P4,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5055,4892,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000061708079644,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40504614,,GSM8772707,,,val,sda-all,samples/GSE288663/GSM8772707,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.77, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8772708,GSE288663,GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0002378,muscle of abdomen,Lower abdominal muscle,primary tissue,,,perturbation,luna,,E2+P4,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8609,5101,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000235682300259,VERIFIED,ABSENT,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,40504614,,GSM8772708,,,val,sda-all,samples/GSE288663/GSM8772708,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.79, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8772709,GSE288663,GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0002378,muscle of abdomen,Lower abdominal muscle,primary tissue,,,perturbation,luna,,E2+P4+RU486,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6188,4984,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000185154707044,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40504614,,GSM8772709,,,val,sda-all,samples/GSE288663/GSM8772709,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.78, ""life_stage"": 1.0}",, -GSM8772710,GSE288663,GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0002378,muscle of abdomen,Lower abdominal muscle,primary tissue,,,perturbation,luna,,E2+P4+RU486,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5076,4749,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999743589743589,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40504614,,GSM8772710,,,val,sda-all,samples/GSE288663/GSM8772710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, +GSM8772710,GSE288663,GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skeletal muscle,luna,UBERON:0002378,muscle of abdomen,Lower abdominal muscle,primary tissue,,,perturbation,luna,,E2+P4+RU486,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5076,4749,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997435897435893,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40504614,,GSM8772710,,,val,sda-all,samples/GSE288663/GSM8772710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM8774701,GSE288758,GSE288758,Spatial dynamics of the tumor microenvironment associated with emerging resistance to targeted therapy in EGFR-mutated non–small cell lung cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,non-small cell lung cancer,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,67850,18085,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41152910,,GSM8774701,,,train,hesrt,samples/GSE288758/GSM8774701,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.78, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8774702,GSE288758,GSE288758,Spatial dynamics of the tumor microenvironment associated with emerging resistance to targeted therapy in EGFR-mutated non–small cell lung cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,non-small cell lung cancer,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,39313,18085,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41152910,,GSM8774702,,,train,hesrt,samples/GSE288758/GSM8774702,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.7000000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8778056,GSE288888,GSE288888,"Spatial Transcriptomics, Histopathology, and Magnetic Resonance Subfield Segmentation of Hippocampal Sclerosis Compared to Normal Hippocampus: A Proof-of-Concept Study",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus on autopsy,primary tissue,,,normal,luna,,Healthy human control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1518,18085,counts,pixel,4.273846181198778,platform_constant,True,H&E,4.273846181198778,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8778056,,,train,hesrt,samples/GSE288888/GSM8778056,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -6802,7 +6802,7 @@ GSM8788016,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metaboli GSM8788017,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4835,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999778813259407,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788017,,,train,sda-all,samples/GSE289263/GSM8788017,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.42, ""life_stage"": 0.8200000000000001}",uberon,low_confidence_annotation GSM8788018,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1949,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000245249896736,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788018,,,train,sda-all,samples/GSE289263/GSM8788018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.37, ""life_stage"": 0.92}",uberon,low_confidence_annotation GSM8788019,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6918,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999882449747267,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788019,,,train,sda-all,samples/GSE289263/GSM8788019,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.33, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8788020,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11970,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499973538751029,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788020,,,train,sda-all,samples/GSE289263/GSM8788020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.31, ""life_stage"": 0.99}",uberon,low_confidence_annotation +GSM8788020,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11970,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997353875102907,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788020,,,train,sda-all,samples/GSE289263/GSM8788020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.31, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM8788021,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10239,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000160462130937,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788021,,,train,sda-all,samples/GSE289263/GSM8788021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.81, ""uberon"": 0.35000000000000003, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM8788022,GSE289263,GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10310,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999919732134667,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40715139,,GSM8788022,,,train,sda-all,samples/GSE289263/GSM8788022,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.59, ""uberon"": 0.37, ""life_stage"": 0.98}",disease_status;uberon,low_confidence_annotation GSM8788640,GSE289299,GSE289299,Syrah: a pipeline to maximize spatial transcriptomics data output,Schmidtea mediterranea,79327,freshwater planarian,Schmidtea mediterranea,79327,,False,False,GEO organism field,Schmidtea mediterranea,,other,luna,,,worm fragments,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT embedded,Slide-seq,release v3,Slide-seqV2,sequencing-based,Slide-seqV2,,,bead,31731,21923,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42081452,,SS-GSM8788640,same_section_within_series,GSM8788641,train,sda-all,samples/GSE289299/GSM8788640,sda-tissue-disease-2.4,"{""organ"": 0.96, ""sample_kind"": 0.89, ""disease_status"": 0.52, ""uberon"": NaN, ""life_stage"": 0.98}",disease_status,low_confidence_annotation @@ -6822,9 +6822,9 @@ GSM8797980,GSE289745,GSE289745,Cancer-induced nerve injury promotes resistance t GSM8797981,GSE289745,GSE289745,Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous squamous cell carcinoma,tumour tissue,MONDO:0002529,skin squamous cell carcinoma,disease,luna,cutaneous squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2748,17943,counts,pixel,4.167567160881076,platform_constant,True,H&E,4.167567160881076,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40836096,10.1038/s41586-025-09370-8,GSM8797981,,,train,hesrt,samples/GSE289745/GSM8797981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.38, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8797982,GSE289745,GSE289745,Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous squamous cell carcinoma,tumour tissue,MONDO:0002529,skin squamous cell carcinoma,disease,luna,cutaneous squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2163,17943,counts,pixel,4.167567160881085,platform_constant,True,H&E,4.167567160881085,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40836096,10.1038/s41586-025-09370-8,GSM8797982,,,train,hesrt,samples/GSE289745/GSM8797982,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.62, ""life_stage"": 1.0}",, GSM8797983,GSE289745,GSE289745,Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous squamous cell carcinoma,tumour tissue,MONDO:0002529,skin squamous cell carcinoma,disease,luna,cutaneous squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4271,17943,counts,pixel,4.093146363419655,platform_constant,True,H&E,4.093146363419655,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40836096,10.1038/s41586-025-09370-8,GSM8797983,,,train,hesrt,samples/GSE289745/GSM8797983,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.53, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8801844,GSE289934,GSE289934,Glioma-neuronal circuit remodeling induces regional immunosuppression [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0021042,glioma,disease,luna,glioma,SB28 glioma inoculated,adult,age rule: age with unit,adult,8–10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1975,19465,counts,pixel,3.9900500119079214,platform_constant,True,H&E,3.9900500119079214,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404658,,GSM8801844,,,train,hesrt,samples/GSE289934/GSM8801844,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8801844,GSE289934,GSE289934,Glioma-neuronal circuit remodeling induces regional immunosuppression [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0021042,glioma,disease,luna,glioma,SB28 glioma inoculated,adult,age rule: age with unit,adult,8–10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1975,19465,counts,pixel,3.9900500119079223,platform_constant,True,H&E,3.9900500119079223,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404658,,GSM8801844,,,train,hesrt,samples/GSE289934/GSM8801844,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8801845,GSE289934,GSE289934,Glioma-neuronal circuit remodeling induces regional immunosuppression [visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,xenograft,MONDO:0021042,glioma,disease,luna,glioma,SB28 glioma inoculated,adult,age rule: age with unit,adult,8–10 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1782,19465,counts,pixel,4.0831800026274605,platform_constant,True,H&E,4.0831800026274605,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404658,,GSM8801845,,,train,hesrt,samples/GSE289934/GSM8801845,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8804262,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28962,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999907001735967,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804262,,,train,sda-all,samples/GSE290041/GSM8804262,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 1.0}",, +GSM8804262,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28962,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999070017359676,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804262,,,train,sda-all,samples/GSE290041/GSM8804262,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 1.0}",, GSM8804263,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52757,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999823217442545,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804263,,,train,sda-all,samples/GSE290041/GSM8804263,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8804264,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,94727,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000117744024491,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804264,,,train,sda-all,samples/GSE290041/GSM8804264,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.4, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8804265,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57680,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999882214369847,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804265,,,train,sda-all,samples/GSE290041/GSM8804265,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 1.0}",, @@ -6832,7 +6832,7 @@ GSM8804266,GSE290041,GSE290041,single-cell spatial analysis reveals molecular me GSM8804267,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,98303,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000235682300259,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804267,,,train,sda-all,samples/GSE290041/GSM8804267,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.4, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8804268,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,74147,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999911598302687,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804268,,,train,sda-all,samples/GSE290041/GSM8804268,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8804269,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38029,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000073659398939,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804269,,,train,sda-all,samples/GSE290041/GSM8804269,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8804270,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,146569,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999705605275553,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804270,,,train,sda-all,samples/GSE290041/GSM8804270,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM8804270,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,146569,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997056052755534,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804270,,,train,sda-all,samples/GSE290041/GSM8804270,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8804271,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77326,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804271,,,train,sda-all,samples/GSE290041/GSM8804271,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.75, ""life_stage"": 1.0}",, GSM8804272,GSE290041,GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000033,head,orophyngeal carcinoma,tumour tissue,MONDO:0044926,oropharyngeal carcinoma,disease,luna,,treatment-naïve,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37874,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999862693944803,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42288489,,GSM8804272,,,train,sda-all,samples/GSE290041/GSM8804272,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM8806098,GSE290094,GSE290094,Spatial Transcriptomic Profiling of the Type 2 Diabetic Coronary Microcirculation Reveals Heterogeneity Varied by Regions of the Heart [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,Db/db,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2223,19465,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.2800337631637735,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41203872,,GSM8806098,,,train,sda-all,samples/GSE290094/GSM8806098,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, @@ -6879,29 +6879,29 @@ GSM8830704,GSE291200,GSE291200,Topological velocity inference from spatial trans GSM8830801,GSE291210,GSE291210,Spatial transcriptomics profile of mammary gland tumours in MMTV-PyMT mouse model of breast cancer [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,breast,luna,UBERON:0000310,breast,FFPE Embedded Tumor,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,663145,285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41781391,,GSM8830801,,,train,sda-all,samples/GSE291210/GSM8830801,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, GSM8830802,GSE291210,GSE291210,Spatial transcriptomics profile of mammary gland tumours in MMTV-PyMT mouse model of breast cancer [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,breast,luna,UBERON:0000310,breast,FFPE Embedded Tumor,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,513963,285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41781391,,GSM8830802,,,train,sda-all,samples/GSE291210/GSM8830802,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8830803,GSE291210,GSE291210,Spatial transcriptomics profile of mammary gland tumours in MMTV-PyMT mouse model of breast cancer [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,breast,luna,UBERON:0000310,breast,FFPE Embedded Tumor,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,786165,285,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41781391,,GSM8830803,,,train,sda-all,samples/GSE291210/GSM8830803,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8831617,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su001 Post Tumor 1 rep 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,484917,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999992611419788,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831617,,,train,sda-all,samples/GSE291246/GSM8831617,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 0.66, ""disease_status"": 0.9500000000000001, ""uberon"": 0.85, ""life_stage"": 0.99}",, +GSM8831617,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su001 Post Tumor 1 rep 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,484917,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999926114197885,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831617,,,train,sda-all,samples/GSE291246/GSM8831617,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 0.66, ""disease_status"": 0.9500000000000001, ""uberon"": 0.85, ""life_stage"": 0.99}",, GSM8831627,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su001 Post Tumor 1 rep 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,480219,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000014785025726,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831627,,,train,sda-all,samples/GSE291246/GSM8831627,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM8831637,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su005 Post Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,70598,533,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999734857412208,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831637,,,train,sda-all,samples/GSE291246/GSM8831637,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 0.96, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM8831638,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su007 Post Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,15087,527,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000609013398294,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831638,,,train,sda-all,samples/GSE291246/GSM8831638,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.92, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 0.99}",, GSM8831639,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su002 Pre Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16562,497,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000185154707044,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831639,,,train,sda-all,samples/GSE291246/GSM8831639,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.91, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8831640,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su006 Pre Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10137,526,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068194217131,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831640,,,train,sda-all,samples/GSE291246/GSM8831640,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8831641,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su005 Post Tumor 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,62334,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500006867188573,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831641,,,train,sda-all,samples/GSE291246/GSM8831641,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.87, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, -GSM8831642,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su005 Post Tumor 3,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69023,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999776816371377,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831642,,,train,sda-all,samples/GSE291246/GSM8831642,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.88, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM8831642,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su005 Post Tumor 3,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69023,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997768163713774,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831642,,,train,sda-all,samples/GSE291246/GSM8831642,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.88, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8831643,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,,primary tissue,MONDO:0005070,neoplasm,disease,luna,,su005 Post Node 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,217331,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.500006867188573,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831643,,,train,sda-all,samples/GSE291246/GSM8831643,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8831644,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,,primary tissue,MONDO:0005070,neoplasm,disease,luna,,su005 Post Node 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64126,532,counts,um,1.0,verified,True,fluorescence: DAPI,0.500006867188573,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831644,,,train,sda-all,samples/GSE291246/GSM8831644,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8831645,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su002 Pre Tumor 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26752,539,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000179487179487,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831645,,,train,sda-all,samples/GSE291246/GSM8831645,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.93, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8831646,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su002 Post Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10049,527,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999829700272479,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831646,,,train,sda-all,samples/GSE291246/GSM8831646,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.91, ""disease_status"": 0.9500000000000001, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM8831647,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su007 Pre Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51534,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137249519626,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831647,,,train,sda-all,samples/GSE291246/GSM8831647,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.93, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8831648,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su008 Post Tumor 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45256,539,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000240219629375,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831648,,,train,sda-all,samples/GSE291246/GSM8831648,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.89, ""disease_status"": 0.93, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM8831649,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su008 Post Tumor 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34270,535,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845594290419,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831649,,,train,sda-all,samples/GSE291246/GSM8831649,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.85, ""disease_status"": 0.97, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM8831649,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su008 Post Tumor 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34270,535,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998455942904196,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831649,,,train,sda-all,samples/GSE291246/GSM8831649,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.85, ""disease_status"": 0.97, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM8831650,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su008 Post Tumor 3,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,70943,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999742692466035,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831650,,,train,sda-all,samples/GSE291246/GSM8831650,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.88, ""disease_status"": 0.96, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM8831651,GSE291246,GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,su008 Post Tumor 4,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55549,526,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137249519626,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40314973,,GSM8831651,,,train,sda-all,samples/GSE291246/GSM8831651,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 0.99}",, GSM8833258,GSE291308,GSE291308,"Site-specific phosphorylation of ERα determines sex-dependent metabolic, reproductive, and body compositional phenotypes in mice",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,uterus,luna,UBERON:0000995,uterus,uterus,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,female,Female,,,FFPE,"formalin-fixed, paraffin-embedded",CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,136343,1010,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,PASS,,,41438071,,GSM8833258,,,train,sda-all,samples/GSE291308/GSM8833258,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8834057,GSE291378,GSE291378,Xenium-based spatial transcriptomics of brains following chronic plastic exposure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,PBS,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64124,503,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999915438965724,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8834057,,,train,sda-all,samples/GSE291378/GSM8834057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8834058,GSE291378,GSE291378,Xenium-based spatial transcriptomics of brains following chronic plastic exposure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,50 nm,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60707,502,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999868608754411,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8834058,,,train,sda-all,samples/GSE291378/GSM8834058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8834058,GSE291378,GSE291378,Xenium-based spatial transcriptomics of brains following chronic plastic exposure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,50 nm,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60707,502,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998686087544114,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8834058,,,train,sda-all,samples/GSE291378/GSM8834058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8834059,GSE291378,GSE291378,Xenium-based spatial transcriptomics of brains following chronic plastic exposure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,500 nm,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,61914,534,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000144472880376,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8834059,,,train,sda-all,samples/GSE291378/GSM8834059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8834155,GSE291385,GSE291385,Hepatic hematopoiesis hijacked by tumor metastasis promotes immunosuppression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,liver metastasis,metastasis,MONDO:1060297,metastatic malignant neoplasm in the liver,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,31135,30357,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM8834155,,,train,sda-all,samples/GSE291385/GSM8834155,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.7000000000000001, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM8836004,GSE291460,GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 16.5,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,mEmbryonic_spinal_cord_100g,xenium-2.0.0.10,cell,292151,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999918218694116,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41505538,,GSM8836004,,,train,sda-all,samples/GSE291460/GSM8836004,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.9400000000000001}",, +GSM8836004,GSE291460,GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 16.5,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,mEmbryonic_spinal_cord_100g,xenium-2.0.0.10,cell,292151,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999182186941166,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41505538,,GSM8836004,,,train,sda-all,samples/GSE291460/GSM8836004,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.9400000000000001}",, GSM8836005,GSE291460,GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 16.5,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,mEmbryonic_spinal_cord_100g,xenium-2.0.0.10,cell,173767,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000094814508343,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41505538,,GSM8836005,,,train,sda-all,samples/GSE291460/GSM8836005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.84}",, GSM8836006,GSE291460,GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 16.5,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,mEmbryonic_spinal_cord_100g,xenium-2.0.0.10,cell,102452,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000487379437718,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41505538,,GSM8836006,,,train,sda-all,samples/GSE291460/GSM8836006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.89}",, GSM8836007,GSE291460,GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,Spinal cord,primary tissue,,,normal,luna,,,embryonic,age rule: embryonic day,embryonic,Embryonic day 16.5,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,mEmbryonic_spinal_cord_100g,xenium-2.0.0.10,cell,145727,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000329380764164,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41505538,,GSM8836007,,,train,sda-all,samples/GSE291460/GSM8836007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.9500000000000001}",, @@ -6932,7 +6932,7 @@ GSM8850438,GSE292123,GSE292123,Spatial transcriptomics analysis of urticarial ra GSM8850439,GSE292123,GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,urticarial rash,primary tissue,MONDO:0018304,Schnitzler syndrome,disease,luna,Schnitzler syndrome,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27541,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000060286619815,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40393905,,GSM8850439,,,train,sda-all,samples/GSE292123/GSM8850439,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8850440,GSE292123,GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,urticarial rash,primary tissue,MONDO:0018304,Schnitzler syndrome,disease,luna,Schnitzler syndrome,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12554,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137249519626,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40393905,,GSM8850440,,,train,sda-all,samples/GSE292123/GSM8850440,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8850441,GSE292123,GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,urticarial rash,primary tissue,MONDO:0018304,Schnitzler syndrome,disease,luna,Schnitzler syndrome,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27359,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40393905,,GSM8850441,,,train,sda-all,samples/GSE292123/GSM8850441,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8850442,GSE292123,GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,urticarial rash,primary tissue,MONDO:0018304,Schnitzler syndrome,disease,luna,Schnitzler syndrome,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16706,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999987104095738,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40393905,,GSM8850442,,,train,sda-all,samples/GSE292123/GSM8850442,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8850442,GSE292123,GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,urticarial rash,primary tissue,MONDO:0018304,Schnitzler syndrome,disease,luna,Schnitzler syndrome,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16706,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999871040957383,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,40393905,,GSM8850442,,,train,sda-all,samples/GSE292123/GSM8850442,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8851325,GSE292156,GSE292156,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0001821,sebaceous gland,Skin,primary tissue,,,normal,luna,,Healthy,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,28526,35127,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,40449655,,GSM8851325,,,train,sda-all,samples/GSE292156/GSM8851325,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.9500000000000001}",, GSM8851326,GSE292156,GSE292156,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0001821,sebaceous gland,Skin,primary tissue,,,normal,luna,,Healthy,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,25242,33379,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,40449655,,GSM8851326,,,train,sda-all,samples/GSE292156/GSM8851326,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8851327,GSE292156,GSE292156,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0001821,sebaceous gland,Skin,primary tissue,,,normal,luna,,Healthy,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,24557,33785,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,40449655,,GSM8851327,,,train,sda-all,samples/GSE292156/GSM8851327,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -6946,7 +6946,7 @@ GSM8855707,GSE292299,GSE292299,Conserved principles of spatial biology define tu GSM8855708,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10078,18120,counts,um,1.0,verified,True,H&E-like (heuristic),14.433796117110576,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855708,,,train,sda-all,samples/GSE292299/GSM8855708,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8855709,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5705,18120,counts,um,1.0,verified,True,H&E-like (heuristic),7.828303642780515,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855709,,,train,sda-all,samples/GSE292299/GSM8855709,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8855710,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,NSCLC tumor,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5218,18120,counts,um,1.0,verified,True,H&E-like (heuristic),5.984771810625042,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855710,,,train,sda-all,samples/GSE292299/GSM8855710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8855711,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12242,18120,counts,um,1.0,verified,True,H&E-like (heuristic),13.690222177208891,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855711,,,train,sda-all,samples/GSE292299/GSM8855711,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8855711,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12242,18120,counts,um,1.0,verified,True,H&E-like (heuristic),13.690222177208893,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855711,,,train,sda-all,samples/GSE292299/GSM8855711,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8855712,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8862,18120,counts,um,1.0,verified,True,H&E-like (heuristic),19.22920996493311,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855712,,,train,sda-all,samples/GSE292299/GSM8855712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8855713,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13202,18120,counts,um,1.0,verified,True,H&E-like (heuristic),12.527683653278112,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855713,,,train,sda-all,samples/GSE292299/GSM8855713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8855714,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,NSCLC tumor,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2131,18120,counts,um,1.0,verified,True,H&E-like (heuristic),7.657900547001402,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855714,,,train,sda-all,samples/GSE292299/GSM8855714,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6955,11 +6955,11 @@ GSM8855716,GSE292299,GSE292299,Conserved principles of spatial biology define tu GSM8855717,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,NSCLC tumor,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13002,18120,counts,um,1.0,verified,True,H&E-like (heuristic),14.591720756366335,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855717,,,train,sda-all,samples/GSE292299/GSM8855717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8855718,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0000977,pleura,NSCLC tumor,metastasis,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5351,18120,counts,um,1.0,verified,True,H&E-like (heuristic),11.166434273112843,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855718,,,train,sda-all,samples/GSE292299/GSM8855718,sda-tissue-disease-2.3,"{""organ"": 0.44, ""sample_kind"": 0.65, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8855719,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,DLBCL tumor,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12413,18085,counts,um,1.0,verified,True,H&E-like (heuristic),8.264852912214588,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855719,,,train,sda-all,samples/GSE292299/GSM8855719,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8855720,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,DLBCL tumor,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13713,18085,counts,um,1.0,verified,True,H&E-like (heuristic),10.23052049026852,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855720,,,train,sda-all,samples/GSE292299/GSM8855720,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8855720,GSE292299,GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,DLBCL tumor,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13713,18085,counts,um,1.0,verified,True,H&E-like (heuristic),10.230520490268521,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8855720,,,train,sda-all,samples/GSE292299/GSM8855720,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8858311,GSE292394,GSE292394,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation [MERFISH],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:1000021,skin of face,,primary tissue,,,normal,luna,,Healthy,adult,age rule: age in years,adult,49 y,female,Female,,,fresh frozen,Fresh frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,69492,315,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,,,,40449655,,GSM8858311,,,test,sda-all,samples/GSE292394/GSM8858311,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8863903,GSE292706,GSE292706,TMPRSS11B promotes an acidified microenvironment and immune suppression in squamous lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005097;MONDO:0005061,squamous cell lung carcinoma;lung adenocarcinoma,disease,luna,lung squamous cell carcinoma,"SNL LUSC GEMM, 11 months post Ad-Cre",adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4282,19465,counts,pixel,1.219421521699385,platform_constant,True,H&E,1.219421521699385,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41214366,,GSM8863903,,,train,hesrt,samples/GSE292706/GSM8863903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM8865417,GSE292791,GSE292791,Cosmx Spatial Analysis of whole brain slices and ventral pallidum,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0001890,forebrain,Whole Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,8 week old,male,male,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,Cosmx,,,cell,131548,1000,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40240618,,GSM8865417,,,train,sda-all,samples/GSE292791/GSM8865417,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.97, ""life_stage"": 0.99}",, -GSM8870977,GSE292956,GSE292956,Spatial transcriptomic comparison between IPF and donor lung distal explant tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Donor,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3433,18085,counts,um,1.0,verified,True,H&E-like (heuristic),10.220516044355596,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8870977,,,train,sda-all,samples/GSE292956/GSM8870977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8870977,GSE292956,GSE292956,Spatial transcriptomic comparison between IPF and donor lung distal explant tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Donor,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3433,18085,counts,um,1.0,verified,True,H&E-like (heuristic),10.220516044355595,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8870977,,,train,sda-all,samples/GSE292956/GSM8870977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8870978,GSE292956,GSE292956,Spatial transcriptomic comparison between IPF and donor lung distal explant tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Donor,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.9639538071879965,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),cluttered background,,,GSM8870978,,,train,sda-all,samples/GSE292956/GSM8870978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8870979,GSE292956,GSE292956,Spatial transcriptomic comparison between IPF and donor lung distal explant tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,Donor,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4257,18085,counts,um,1.0,verified,True,H&E-like (heuristic),10.131067602646484,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),background may not be typical H&E,,,GSM8870979,,,train,sda-all,samples/GSE292956/GSM8870979,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8870980,GSE292956,GSE292956,Spatial transcriptomic comparison between IPF and donor lung distal explant tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0800504,idiopathic pulmonary fibrosis,disease,luna,,IPF,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4595,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.95719831774099,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8870980,,,train,sda-all,samples/GSE292956/GSM8870980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -6990,7 +6990,7 @@ GSM8875099,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteos GSM8875100,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,842,17943,counts,um,1.0,verified,True,H&E,4.020298117928821,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875100,,,train,sda-all,samples/GSE293065/GSM8875100,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8875101,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1805,17943,counts,um,1.0,verified,True,H&E,3.934482783578301,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875101,,,train,sda-all,samples/GSE293065/GSM8875101,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.68, ""life_stage"": 1.0}",, GSM8875102,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,461,17943,counts,um,1.0,verified,True,H&E,3.9747045810137713,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875102,,,train,sda-all,samples/GSE293065/GSM8875102,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.52, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8875103,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,754,17943,counts,um,1.0,verified,True,H&E,3.948057095232772,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875103,,,train,sda-all,samples/GSE293065/GSM8875103,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 0.99}",uberon,low_confidence_annotation +GSM8875103,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,754,17943,counts,um,1.0,verified,True,H&E,3.9480570952327723,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875103,,,train,sda-all,samples/GSE293065/GSM8875103,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM8875104,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2191,17943,counts,um,1.0,verified,True,H&E,3.952768127673753,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875104,,,train,sda-all,samples/GSE293065/GSM8875104,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8875105,GSE293065,GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Primary bone osteosarcoma,tumour tissue,MONDO:0002629,bone osteosarcoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,876,17943,counts,um,1.0,verified,True,H&E,3.989067994291891,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42399228,,GSM8875105,,,train,sda-all,samples/GSE293065/GSM8875105,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8876950,GSE293124,GSE293124,Concurrent genetic and non-genetic resistance mechanisms to KRAS inhibition in CRC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,colorectal cancer,metastasis,MONDO:0024331,colorectal carcinoma,disease,luna,Metastatic,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,61418,1207,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42167227,,GSM8876950,,,train,sda-all,samples/GSE293124/GSM8876950,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation @@ -7010,10 +7010,10 @@ GSM8876963,GSE293124,GSE293124,Concurrent genetic and non-genetic resistance mec GSM8877284,GSE293144,GSE293144,A Deep Dive into the Functional and Spatial Heterogeneity of Lung Interstitial Macrophages [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,LPS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1717519,541,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,42358977,,GSM8877284,,,test,sda-all,samples/GSE293144/GSM8877284,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8877285,GSE293144,GSE293144,A Deep Dive into the Functional and Spatial Heterogeneity of Lung Interstitial Macrophages [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,Naïve,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mLung_100g,xenium-2.0.0.10,cell,1183880,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999945645084141,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42358977,,GSM8877285,,,test,sda-all,samples/GSE293144/GSM8877285,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8878529,GSE293199,GSE293199,A visual–omics foundation model to bridge histopathology image with transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,uberon_chain,UBERON:0000310,breast,breast,xenograft,MONDO:0005494,triple-negative breast carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human Breast Gene Expression,xenium-2.0.0.10,cell,189598,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890452310239,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40442373,,GSM8878529,,,train,sda-all,samples/GSE293199/GSM8878529,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8881930,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,601,36601,counts,pixel,4.840892208451948,platform_constant,True,H&E,4.840892208451948,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881930,,,train,hesrt,samples/GSE293427/GSM8881930,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8881930,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,601,36601,counts,pixel,4.8408922084519475,platform_constant,True,H&E,4.8408922084519475,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881930,,,train,hesrt,samples/GSE293427/GSM8881930,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8881931,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,711,36601,counts,pixel,4.83955890369402,platform_constant,True,H&E,4.83955890369402,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881931,,,train,hesrt,samples/GSE293427/GSM8881931,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8881932,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,669,36601,counts,pixel,4.842558993454119,platform_constant,True,H&E,4.842558993454119,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881932,,,train,hesrt,samples/GSE293427/GSM8881932,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8881933,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,701,36601,counts,pixel,4.604588505868295,platform_constant,True,H&E,4.604588505868295,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881933,,,train,hesrt,samples/GSE293427/GSM8881933,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8881933,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,701,36601,counts,pixel,4.6045885058682945,platform_constant,True,H&E,4.6045885058682945,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881933,,,train,hesrt,samples/GSE293427/GSM8881933,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8881934,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,,,normal,luna,,Non-Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,645,36601,counts,pixel,4.6070795153609065,platform_constant,True,H&E,4.6070795153609065,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881934,,,train,hesrt,samples/GSE293427/GSM8881934,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8881935,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,734,36601,counts,pixel,4.627990437672536,platform_constant,True,H&E,4.627990437672536,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881935,,,train,hesrt,samples/GSE293427/GSM8881935,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8881936,GSE293427,GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005616,mesenteric artery,Blood Vessel,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,Diabetic,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,851,36601,counts,pixel,5.511288946579142,platform_constant,True,H&E,5.511288946579142,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42018669,,GSM8881936,,,train,hesrt,samples/GSE293427/GSM8881936,sda-tissue-disease-2.5,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7033,7 +7033,7 @@ GSM8890018,GSE293783,GSE293783,An organoid model of the human adrenal cortex ide GSM8890214,GSE293800,GSE293800,Cancer agnostic potential of CAR T cells targeting the urokinase plasminogen activator receptor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77695,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999920402445237,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41916312,,GSM8890214,,,train,sda-all,samples/GSE293800/GSM8890214,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8893111,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,,,normal,luna,,Control brain with APOE3/3,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13235,18085,counts,pixel,14.41080866726264,platform_constant,True,H&E,14.41080866726264,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893111,,,train,hesrt,samples/GSE293896/GSM8893111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8893112,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,,,normal,luna,,Control brain with APOE3/3,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,12985,18085,counts,pixel,15.402003571160476,platform_constant,True,H&E,15.402003571160476,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893112,,,train,hesrt,samples/GSE293896/GSM8893112,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8893113,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,,,normal,luna,,Control brain with APOE3/4,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13079,18085,counts,pixel,13.146702987539175,platform_constant,True,H&E,13.146702987539175,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893113,,,train,hesrt,samples/GSE293896/GSM8893113,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8893113,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,,,normal,luna,,Control brain with APOE3/4,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13079,18085,counts,pixel,13.146702987539177,platform_constant,True,H&E,13.146702987539177,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893113,,,train,hesrt,samples/GSE293896/GSM8893113,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8893114,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,,,normal,luna,,Control brain with APOE3/4,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,11931,18085,counts,pixel,13.905166136701354,platform_constant,True,H&E,13.905166136701354,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893114,,,train,hesrt,samples/GSE293896/GSM8893114,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8893115,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,MONDO:0007488,Lewy body dementia,disease,luna,Lewy Body Dementia,LBD brain with APOE3/3,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,12011,18085,counts,pixel,14.442856741427088,platform_constant,True,H&E,14.442856741427088,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893115,,,train,hesrt,samples/GSE293896/GSM8893115,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8893116,GSE293896,GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,Postmortem temporal cortex,primary tissue,MONDO:0007488,Lewy body dementia,disease,luna,Lewy Body Dementia,LBD brain with APOE3/3,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,11447,18085,counts,pixel,14.151968621545176,platform_constant,True,H&E,14.151968621545176,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41588135,,GSM8893116,,,train,hesrt,samples/GSE293896/GSM8893116,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7053,12 +7053,12 @@ GSM8898656,GSE294097,GSE294097,P301S Mutant Tau-Driven Zebrafish Platform Enable GSM8898657,GSE294097,GSE294097,P301S Mutant Tau-Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3β Inhibitors with Anti-Neurodegenerative Efficacy,Danio rerio,7955,zebrafish,Danio rerio,7955,,False,False,GEO organism field,Danio rerio,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,5609,25973,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM8898657,,,val,sda-all,samples/GSE294097/GSM8898657,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8898959,GSE294120,GSE294120,Study on the Effects of Retinoids on UVR-Induced Skin Photoaging [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,"UVR skin of SKH-1 mice (upper), and normal skin of SKH-1 mice (lower)",adult,age rule: age with unit,not stated,10–12 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1404,19465,counts,pixel,6.109423838294563,platform_constant,True,H&E,6.109423838294563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41644086,,GSM8898959,,,val,hesrt,samples/GSE294120/GSM8898959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 0.51, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM8898960,GSE294120,GSE294120,Study on the Effects of Retinoids on UVR-Induced Skin Photoaging [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,perturbation,luna,,"UVR and treated with 0.1% Retinol skin of SKH-1 mice (upper), UVR and treated with 0.03% 9-cis HPR skin of SKH-1 mice (lower)",adult,age rule: age with unit,not stated,10–12 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1771,19465,counts,pixel,5.021750002741895,platform_constant,True,H&E,5.021750002741895,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41644086,,GSM8898960,,,val,hesrt,samples/GSE294120/GSM8898960,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.55, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8900422,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002102,forelimb,15 micrometer cryosection from whole forelimb,primary tissue,,,normal,luna,,0 (Mature limb),adult,luna,adult,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64426,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944839759501,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900422,,,train,sda-all,samples/GSE294212/GSM8900422,sda-tissue-disease-2.4,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 0.91}",disease_status,low_confidence_annotation +GSM8900422,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002102,forelimb,15 micrometer cryosection from whole forelimb,primary tissue,,,normal,luna,,0 (Mature limb),adult,luna,adult,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64426,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999448397595014,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900422,,,train,sda-all,samples/GSE294212/GSM8900422,sda-tissue-disease-2.4,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 0.91}",disease_status,low_confidence_annotation GSM8900423,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002472,stylopod,15 micrometer cryosection from whole stylopod,primary tissue,,,perturbation,luna,,3 dpa,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12823,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000012903891814,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900423,,,train,sda-all,samples/GSE294212/GSM8900423,sda-tissue-disease-2.4,"{""organ"": 0.48, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.87}",organ,low_confidence_annotation GSM8900424,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002472,stylopod,15 micrometer cryosection from whole stylopod,primary tissue,,,perturbation,luna,,5 dpa,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5869,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051303098707,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900424,,,train,sda-all,samples/GSE294212/GSM8900424,sda-tissue-disease-2.4,"{""organ"": 0.45, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 0.87}",organ,low_confidence_annotation GSM8900425,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002472,stylopod,15 micrometer cryosection from whole stylopod,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17002,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500003759681179,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900425,,,train,sda-all,samples/GSE294212/GSM8900425,sda-tissue-disease-2.4,"{""organ"": 0.6000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.93}",, GSM8900426,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002472,stylopod,15 micrometer cryosection from whole stylopod,primary tissue,,,perturbation,luna,,10 dpa,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5400,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999589827727645,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900426,,,train,sda-all,samples/GSE294212/GSM8900426,sda-tissue-disease-2.4,"{""organ"": 0.64, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",, -GSM8900427,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002472,stylopod,15 micrometer cryosection from whole stylopod,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,13166,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922608605922,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900427,,,train,sda-all,samples/GSE294212/GSM8900427,sda-tissue-disease-2.4,"{""organ"": 0.45, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",organ,low_confidence_annotation +GSM8900427,GSE294212,GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,other,luna,UBERON:0002472,stylopod,15 micrometer cryosection from whole stylopod,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,13166,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999226086059223,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8900427,,,train,sda-all,samples/GSE294212/GSM8900427,sda-tissue-disease-2.4,"{""organ"": 0.45, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",organ,low_confidence_annotation GSM8900554,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,Naïve,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1992,57010,counts,pixel,4.225625123768563,platform_constant,True,H&E,4.225625123768563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40336950,,GSM8900554,,,train,hesrt,samples/GSE294222/GSM8900554,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8900555,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,Naïve,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2614,57010,counts,pixel,4.2385592182814165,platform_constant,True,H&E,4.2385592182814165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40336950,,GSM8900555,,,train,hesrt,samples/GSE294222/GSM8900555,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8900556,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,Vaccinated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2013,57010,counts,pixel,4.225625123768563,platform_constant,True,H&E,4.225625123768563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40336950,,GSM8900556,,,train,hesrt,samples/GSE294222/GSM8900556,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7067,7 +7067,7 @@ GSM8900558,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immun GSM8900559,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,Naïve,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2054,57010,counts,pixel,4.2385592182814165,platform_constant,True,H&E,4.2385592182814165,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40336950,,GSM8900559,,,train,hesrt,samples/GSE294222/GSM8900559,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8900560,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,Vaccinated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1722,57010,counts,pixel,4.225625123768563,platform_constant,True,H&E,4.225625123768563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40336950,,GSM8900560,,,train,hesrt,samples/GSE294222/GSM8900560,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8900561,GSE294222,GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,Vaccinated,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2881,57010,counts,pixel,4.225625123768563,platform_constant,True,H&E,4.225625123768563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40336950,,GSM8900561,,,train,hesrt,samples/GSE294222/GSM8900561,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8900775,GSE294237,GSE294237,Single-Cell Multimodal Profiling Highlights Persistent Aortic Smooth Muscle Cell Changes in Diabetic Mice Despite Glycemic Control,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0000947,aorta,Aorta tissue,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,either saline or DAPA,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17160,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999939068973921,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41641545,,GSM8900775,,,test,sda-all,samples/GSE294237/GSM8900775,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8900775,GSE294237,GSE294237,Single-Cell Multimodal Profiling Highlights Persistent Aortic Smooth Muscle Cell Changes in Diabetic Mice Despite Glycemic Control,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0000947,aorta,Aorta tissue,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,either saline or DAPA,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17160,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999390689739215,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41641545,,GSM8900775,,,test,sda-all,samples/GSE294237/GSM8900775,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9262941,GSE294277,GSE294277,Integrative single cell RNA-sequencing and spatial transcriptomics uncovers distinct macrophage-fibroblast cross-talk in human hip synovium between patients with femoroacetabular impingement and osteoarthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,,,disease,luna,FAI,FAI,not stated,luna,not stated,,unknown,,GSE294277:FAI patient #1,FAI patient #1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1876,17943,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41524472,,GSM9262941,,,test,hesrt,samples/GSE294277/GSM9262941,sda-tissue-disease-2.3,"{""organ"": 0.58, ""sample_kind"": 0.54, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",organ;sample_kind,low_confidence_annotation GSM9262942,GSE294277,GSE294277,Integrative single cell RNA-sequencing and spatial transcriptomics uncovers distinct macrophage-fibroblast cross-talk in human hip synovium between patients with femoroacetabular impingement and osteoarthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,,,disease,luna,FAI,FAI,not stated,luna,not stated,,unknown,,GSE294277:FAI patient #2,FAI patient #2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1766,17943,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41524472,,GSM9262942,,,test,hesrt,samples/GSE294277/GSM9262942,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 0.66, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9262943,GSE294277,GSE294277,Integrative single cell RNA-sequencing and spatial transcriptomics uncovers distinct macrophage-fibroblast cross-talk in human hip synovium between patients with femoroacetabular impingement and osteoarthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,,,disease,luna,FAI,FAI,not stated,luna,not stated,,unknown,,GSE294277:FAI patient #5,FAI patient #5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2721,17943,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41524472,,GSM9262943,,,test,hesrt,samples/GSE294277/GSM9262943,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.78, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7087,7 +7087,7 @@ GSM8903662,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cance GSM8903663,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12266,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.0121420651635455,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain looks slightly off; check whether it is H&E,42425074,,GSM8903663,,,train,sda-all,samples/GSE294385/GSM8903663,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903664,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11406,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.566735750760095,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain looks slightly off; check whether it is H&E,42425074,,GSM8903664,,,train,sda-all,samples/GSE294385/GSM8903664,sda-tissue-disease-2.3,"{""organ"": 0.81, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903665,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,6746,18085,counts,um,1.0,verified,True,H&E-like (heuristic),5.129020729416923,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain looks slightly off; check whether it is H&E,42425074,,GSM8903665,,,train,sda-all,samples/GSE294385/GSM8903665,sda-tissue-disease-2.3,"{""organ"": 0.67, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8903666,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8774,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.726061343515815,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain looks slightly off; check whether it is H&E,42425074,,GSM8903666,,,train,sda-all,samples/GSE294385/GSM8903666,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8903666,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8774,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.7260613435158145,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain looks slightly off; check whether it is H&E,42425074,,GSM8903666,,,train,sda-all,samples/GSE294385/GSM8903666,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903667,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3398,18085,counts,um,1.0,verified,True,H&E-like (heuristic),5.746976137153565,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903667,,,train,sda-all,samples/GSE294385/GSM8903667,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903668,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7746,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.289740530581422,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903668,,,train,sda-all,samples/GSE294385/GSM8903668,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903669,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10148,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.820624938205231,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903669,,,train,sda-all,samples/GSE294385/GSM8903669,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -7105,7 +7105,7 @@ GSM8903680,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cance GSM8903681,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11911,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.294745267766111,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903681,,,train,sda-all,samples/GSE294385/GSM8903681,sda-tissue-disease-2.3,"{""organ"": 0.74, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903682,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12528,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.354309247181917,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903682,,,train,sda-all,samples/GSE294385/GSM8903682,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903683,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11599,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.149834790894239,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903683,,,train,sda-all,samples/GSE294385/GSM8903683,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8903684,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10876,18085,counts,um,1.0,verified,True,H&E-like (heuristic),7.284911318736293,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903684,,,train,sda-all,samples/GSE294385/GSM8903684,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8903684,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10876,18085,counts,um,1.0,verified,True,H&E-like (heuristic),7.2849113187362935,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903684,,,train,sda-all,samples/GSE294385/GSM8903684,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903685,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,6240,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.044379100047982,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903685,,,train,sda-all,samples/GSE294385/GSM8903685,sda-tissue-disease-2.3,"{""organ"": 0.74, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903686,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4330,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.555858683174352,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903686,,,train,sda-all,samples/GSE294385/GSM8903686,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8903687,GSE294385,GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Colorectal cancer metastasis,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7238,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.13774628043069,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42425074,,GSM8903687,,,train,sda-all,samples/GSE294385/GSM8903687,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -7155,29 +7155,29 @@ GSM8907602,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid a GSM8907603,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient1,Patient1,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,9829,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907603,,,train,sda-all,samples/GSE294466/GSM8907603,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8907604,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient1,Patient1,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,6576,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020664572656,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907604,,,train,sda-all,samples/GSE294466/GSM8907604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907605,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient1,Patient1,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,6342,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907605,,,train,sda-all,samples/GSE294466/GSM8907605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8907606,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient2,Patient2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,20537,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999958577267204,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907606,,,train,sda-all,samples/GSE294466/GSM8907606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8907606,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient2,Patient2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,20537,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999585772672045,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907606,,,train,sda-all,samples/GSE294466/GSM8907606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8907607,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient2,Patient2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,21723,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000133041627247,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907607,,,train,sda-all,samples/GSE294466/GSM8907607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8907608,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient2,Patient2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,6665,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999935259995856,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907608,,,train,sda-all,samples/GSE294466/GSM8907608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8907608,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient2,Patient2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,6665,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999352599958563,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907608,,,train,sda-all,samples/GSE294466/GSM8907608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907609,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient2,Patient2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,6776,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000097145225636,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907609,,,train,sda-all,samples/GSE294466/GSM8907609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907610,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient3,Patient3,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,12829,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000124120810923,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907610,,,train,sda-all,samples/GSE294466/GSM8907610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907611,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient3,Patient3,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,11521,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999844797616091,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907611,,,train,sda-all,samples/GSE294466/GSM8907611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8907612,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient3,Patient3,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,10396,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000185935046689,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907612,,,train,sda-all,samples/GSE294466/GSM8907612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8907613,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient3,Patient3,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,9878,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020664572656,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907613,,,train,sda-all,samples/GSE294466/GSM8907613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM8907614,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,26134,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068961712457,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907614,,,train,sda-all,samples/GSE294466/GSM8907614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8907615,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,25207,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999993103448275,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907615,,,train,sda-all,samples/GSE294466/GSM8907615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8907616,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,19853,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917314370762,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907616,,,train,sda-all,samples/GSE294466/GSM8907616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM8907617,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,18784,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999855312112443,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907617,,,train,sda-all,samples/GSE294466/GSM8907617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM8907615,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,25207,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999931034482753,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907615,,,train,sda-all,samples/GSE294466/GSM8907615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8907616,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.5.0.3,cell,19853,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999173143707626,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907616,,,train,sda-all,samples/GSE294466/GSM8907616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM8907617,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,GSE294466:Patient4,Patient4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.5.0.3,cell,18784,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998553121124434,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907617,,,train,sda-all,samples/GSE294466/GSM8907617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8907618,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient5,Patient5,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,30205,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999915438965724,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907618,,,train,sda-all,samples/GSE294466/GSM8907618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8907619,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient5,Patient5,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,30228,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000075165363801,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907619,,,train,sda-all,samples/GSE294466/GSM8907619,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8907620,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient6,Patient6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,35183,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000178504321684,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907620,,,train,sda-all,samples/GSE294466/GSM8907620,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8907621,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient6,Patient6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,34998,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999803881090008,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907621,,,train,sda-all,samples/GSE294466/GSM8907621,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907622,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient7,Patient7,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,14547,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000122125356982,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907622,,,train,sda-all,samples/GSE294466/GSM8907622,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8907623,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient7,Patient7,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,14638,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000169071235347,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907623,,,train,sda-all,samples/GSE294466/GSM8907623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8907624,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient8,Patient8,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,24028,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948230978581,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907624,,,train,sda-all,samples/GSE294466/GSM8907624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8907624,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient8,Patient8,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,24028,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999482309785814,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907624,,,train,sda-all,samples/GSE294466/GSM8907624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8907625,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient8,Patient8,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,24963,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999933463449254,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907625,,,train,sda-all,samples/GSE294466/GSM8907625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8907626,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient9,Patient9,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,49626,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999933463449254,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907626,,,train,sda-all,samples/GSE294466/GSM8907626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907627,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient9,Patient9,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,48629,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999977819837937,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907627,,,train,sda-all,samples/GSE294466/GSM8907627,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8907628,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient10,Patient10,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,16043,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999887328175467,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907628,,,train,sda-all,samples/GSE294466/GSM8907628,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8907628,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient10,Patient10,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,16043,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998873281754674,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907628,,,train,sda-all,samples/GSE294466/GSM8907628,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8907629,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient10,Patient10,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,16496,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000169071235347,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41413386,,GSM8907629,,,train,sda-all,samples/GSE294466/GSM8907629,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8907630,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient11,Patient11,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_314g,xenium-1.7.1.0,cell,16417,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999770768384375,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907630,,,train,sda-all,samples/GSE294466/GSM8907630,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM8907631,GSE294466,GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0005396,carotid artery segment,human carotid artery tissue,primary tissue,,,disease,luna,,Plaque,not stated,luna,not stated,,unknown,,GSE294466:Patient11,Patient11,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hArtery_345g,xenium-1.7.1.0,cell,15532,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965615257656,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41413386,,GSM8907631,,,train,sda-all,samples/GSE294466/GSM8907631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -7226,11 +7226,11 @@ GSM8925218,GSE294844,GSE294844,Transcriptional signature for dysplastic epiderma GSM8925219,GSE294844,GSE294844,Transcriptional signature for dysplastic epidermal development in human pre-malignant skin,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism is a metagenome label; host species given,human skin metagenome,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,actinic keratosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium v2 CytAssist Spatial Gene Expression,,,spot,921,18085,counts,pixel,4.761904761904762,platform_constant,True,H&E,4.761904761904762,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8925219,,,test,hesrt,samples/GSE294844/GSM8925219,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.28, ""uberon"": 0.54, ""life_stage"": 1.0}",disease_status;uberon,normal_but_disease_text;low_confidence_annotation GSM8925221,GSE294844,GSE294844,Transcriptional signature for dysplastic epidermal development in human pre-malignant skin,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism is a metagenome label; host species given,human skin metagenome,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,normal,luna,actinic keratosis,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium CytAssist,sequencing-based,10x Genomics Visium v2 CytAssist Spatial Gene Expression,,,spot,2289,18085,counts,pixel,4.761904761904762,platform_constant,True,H&E,4.761904761904762,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8925221,,,test,hesrt,samples/GSE294844/GSM8925221,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.24, ""uberon"": 0.46, ""life_stage"": 0.99}",disease_status;uberon,normal_but_disease_text;low_confidence_annotation GSM8933087,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,435381,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000109841827768,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933087,,,train,sda-all,samples/GSE294965/GSM8933087,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8933088,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,412356,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890813801135,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933088,,,train,sda-all,samples/GSE294965/GSM8933088,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM8933089,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,351827,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999975646583215,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933089,,,train,sda-all,samples/GSE294965/GSM8933089,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8933090,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,441503,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999910606227308,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933090,,,train,sda-all,samples/GSE294965/GSM8933090,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8933088,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,412356,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998908138011355,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933088,,,train,sda-all,samples/GSE294965/GSM8933088,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM8933089,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,351827,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999756465832157,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933089,,,train,sda-all,samples/GSE294965/GSM8933089,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8933090,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,441503,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999106062273085,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933090,,,train,sda-all,samples/GSE294965/GSM8933090,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8933091,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,339498,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000012167226359,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933091,,,train,sda-all,samples/GSE294965/GSM8933091,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8933092,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,334451,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999903220811396,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933092,,,train,sda-all,samples/GSE294965/GSM8933092,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM8933092,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,334451,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999032208113964,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933092,,,train,sda-all,samples/GSE294965/GSM8933092,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM8933093,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,10x Genomics Xenium In Situ,,,cell,317414,541,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40393992,10.1101/2024.12.18.629206,GSM8933093,,,train,hesrt,samples/GSE294965/GSM8933093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8933094,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,481717,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000032303080423,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933094,,,train,sda-all,samples/GSE294965/GSM8933094,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8933095,GSE294965,GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_480g,xenium-1.7.1.0,cell,307653,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000115027146407,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40393992,,GSM8933095,,,train,sda-all,samples/GSE294965/GSM8933095,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -7246,8 +7246,8 @@ GSM8941355,GSE295060,GSE295060,Gain-of-function PPM1D mutations attenuate ischem GSM8941356,GSE295060,GSE295060,Gain-of-function PPM1D mutations attenuate ischemic stroke,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0000944;MONDO:1060198,cerebral artery occlusion;ischemic stroke,disease,luna,ischemic stroke,Wild-type; middle cerebral artery occlusion (MCAO) model induction,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2846,31053,counts,pixel,4.007650296628716,platform_constant,True,H&E,4.007650296628716,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM8941356,,,train,hesrt,samples/GSE295060/GSM8941356,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.65, ""life_stage"": 1.0}",, GSM8941357,GSE295061,GSE295061,Utx (Kdm6a) promotes differentiation non-catalytically in somatic self-renewing epithelia [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,40371,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000091352009742,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40372430,,GSM8941357,,,train,sda-all,samples/GSE295061/GSM8941357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.31, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM8941358,GSE295061,GSE295061,Utx (Kdm6a) promotes differentiation non-catalytically in somatic self-renewing epithelia [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52308,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999882739212007,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40372430,,GSM8941358,,,train,sda-all,samples/GSE295061/GSM8941358,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.4, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM8943583,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1753,58288,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999895588832697,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943583,,,train,hesrt,samples/GSE295206/GSM8943583,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8943584,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2087,58288,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999895588832697,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943584,,,train,hesrt,samples/GSE295206/GSM8943584,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943583,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1753,58288,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49998955888326974,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943583,,,train,hesrt,samples/GSE295206/GSM8943583,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943584,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2087,58288,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49998955888326974,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943584,,,train,hesrt,samples/GSE295206/GSM8943584,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8943585,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3526,36601,counts,pixel,1.3888888888888888,platform_constant,True,H&E,1.3888888888888888,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943585,,,train,hesrt,samples/GSE295206/GSM8943585,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8943586,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3586,36601,counts,pixel,1.3888888888888888,platform_constant,True,H&E,1.3888888888888888,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943586,,,train,hesrt,samples/GSE295206/GSM8943586,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.99, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8943587,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1967,36601,counts,pixel,1.3888888888888888,platform_constant,True,H&E,1.3888888888888888,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943587,,,train,hesrt,samples/GSE295206/GSM8943587,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7256,16 +7256,16 @@ GSM8943589,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root gang GSM8943590,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3396,36601,counts,pixel,1.3888888888888888,platform_constant,True,H&E,1.3888888888888888,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943590,,,train,hesrt,samples/GSE295206/GSM8943590,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8943591,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2701,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999957162054191,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943591,,,train,hesrt,samples/GSE295206/GSM8943591,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8943592,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2412,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999997784474572,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943592,,,train,hesrt,samples/GSE295206/GSM8943592,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.19, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8943593,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2833,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999946875011067,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943593,,,train,hesrt,samples/GSE295206/GSM8943593,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 0.99, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8943594,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3089,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999909952582982,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943594,,,train,hesrt,samples/GSE295206/GSM8943594,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8943595,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3273,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999877941106259,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943595,,,train,hesrt,samples/GSE295206/GSM8943595,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8943596,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3987,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999982417644245,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943596,,,train,hesrt,samples/GSE295206/GSM8943596,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8943597,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3315,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.4999877941106259,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943597,,,train,hesrt,samples/GSE295206/GSM8943597,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943593,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2833,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49999468750110676,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943593,,,train,hesrt,samples/GSE295206/GSM8943593,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 0.99, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943594,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3089,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49999099525829827,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943594,,,train,hesrt,samples/GSE295206/GSM8943594,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943595,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3273,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49998779411062594,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943595,,,train,hesrt,samples/GSE295206/GSM8943595,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943596,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3987,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49999824176442453,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943596,,,train,hesrt,samples/GSE295206/GSM8943596,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8943597,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3315,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.49998779411062594,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943597,,,train,hesrt,samples/GSE295206/GSM8943597,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8943598,GSE295206,GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3907,36601,counts,pixel,0.3460207612456747,platform_constant,True,H&E,0.5000053563585332,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40325011,,GSM8943598,,,train,hesrt,samples/GSE295206/GSM8943598,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8944108,GSE295237,GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,"temporal neocortex,nonepileptic",primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4185,33538,counts,um,1.0,verified,True,H&E,3.9674883836863017,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42068085,,GSM8944108,,,train,sda-all,samples/GSE295237/GSM8944108,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8944109,GSE295237,GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,"temporal neocortex,nonepileptic",primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4338,33538,counts,um,1.0,verified,True,H&E,3.987701931773198,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42068085,,GSM8944109,,,train,sda-all,samples/GSE295237/GSM8944109,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8944110,GSE295237,GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,"temporal neocortex,epileptogenic",primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2571,33538,counts,um,1.0,verified,True,H&E,4.065557313238917,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42068085,,GSM8944110,,,train,sda-all,samples/GSE295237/GSM8944110,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8944111,GSE295237,GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,"temporal neocortex,epileptogenic",primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2709,33538,counts,um,1.0,verified,True,H&E,3.987632466646288,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42068085,,GSM8944111,,,train,sda-all,samples/GSE295237/GSM8944111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8944111,GSE295237,GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016538,temporal cortex,"temporal neocortex,epileptogenic",primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2709,33538,counts,um,1.0,verified,True,H&E,3.9876324666462875,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42068085,,GSM8944111,,,train,sda-all,samples/GSE295237/GSM8944111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9684470,GSE295275,GSE295275,"Genomic and transcriptomic feature of HBV integration in treatment-naïve, HBeAg-positive children with chronic HBV infection",Homo sapiens,9606,human,Homo sapiens,9606,Hepatitis B virus,False,False,GEO lists only a non-host organism; host from the features' Ensembl gene IDs,Hepatitis B virus,Homo sapiens,liver,luna,UBERON:0002107,liver,liver tissue,primary tissue,MONDO:0005550,infectious disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,999,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.409785507339969,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9684470,,,val,sda-all,samples/GSE295275/GSM9684470,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 0.45}",life_stage,low_confidence_annotation GSM9684471,GSE295275,GSE295275,"Genomic and transcriptomic feature of HBV integration in treatment-naïve, HBeAg-positive children with chronic HBV infection",Homo sapiens,9606,human,Homo sapiens,9606,Hepatitis B virus,False,False,GEO lists only a non-host organism; host from the features' Ensembl gene IDs,Hepatitis B virus,Homo sapiens,liver,luna,UBERON:0002107,liver,liver tissue,primary tissue,MONDO:0005550,infectious disease,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,822,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.408772131960675,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9684471,,,val,sda-all,samples/GSE295275/GSM9684471,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 0.92}",, GSM8953673,GSE295606,GSE295606,Dermal adipocytes activate hair follicle stem cells through metabolic communication [SP],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,676589,32285,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41130201,,GSM8953673,,,train,sda-all,samples/GSE295606/GSM8953673,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.63, ""life_stage"": 1.0}",, @@ -7276,12 +7276,12 @@ GSM8956239,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glyce GSM8956240,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.0.0.15,cell,101272,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999883510225213,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956240,,,train,sda-all,samples/GSE295730/GSM8956240,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8956241,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.0.0.15,cell,109734,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999909420289855,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956241,,,train,sda-all,samples/GSE295730/GSM8956241,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8956242,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.0.0.15,cell,94906,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103528242504,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956242,,,train,sda-all,samples/GSE295730/GSM8956242,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8956243,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.0.0.15,cell,106573,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999861985204814,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956243,,,train,sda-all,samples/GSE295730/GSM8956243,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8956243,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.0.0.15,cell,106573,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998619852048143,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956243,,,train,sda-all,samples/GSE295730/GSM8956243,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8956244,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.0.0.15,cell,105300,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922336129233,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956244,,,train,sda-all,samples/GSE295730/GSM8956244,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8956245,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,102812,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999954700766204,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956245,,,train,sda-all,samples/GSE295730/GSM8956245,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8956245,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,102812,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999547007662043,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956245,,,train,sda-all,samples/GSE295730/GSM8956245,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8956246,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,89177,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999979297780722,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956246,,,train,sda-all,samples/GSE295730/GSM8956246,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8956247,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,92567,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944787985865,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956247,,,train,sda-all,samples/GSE295730/GSM8956247,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8956248,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,97669,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999993528345844,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956248,,,train,sda-all,samples/GSE295730/GSM8956248,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8956247,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,92567,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999447879858655,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956247,,,train,sda-all,samples/GSE295730/GSM8956247,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8956248,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,97669,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999935283458447,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956248,,,train,sda-all,samples/GSE295730/GSM8956248,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8956249,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,151579,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500002760905577,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956249,,,train,sda-all,samples/GSE295730/GSM8956249,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8956250,GSE295730,GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,94784,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922336129233,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40903586,,GSM8956250,,,train,sda-all,samples/GSE295730/GSM8956250,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8958026,GSE295815,GSE295815,The DLX/Notch axis is necessary for spatiotemporal regulation of neural cell fate,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0001890,forebrain,head; forebrain,primary tissue,,,normal,luna,,wildtype,embryonic,age rule: embryonic day,embryonic,E12.5,unknown,,,,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,STOmics,,,bin,11578,31170,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM8958026,,,train,sda-all,samples/GSE295815/GSM8958026,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 1.0}",, @@ -7304,10 +7304,10 @@ GSM8959877,GSE295862,GSE295862,Selective remodelling of the adipose niche in obe GSM8959878,GSE295862,GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adipose tissue,luna,UBERON:0001013,adipose tissue,Periumbilical Adipose Tissue,primary tissue,,,normal,luna,,Lean,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6059,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40634602,,GSM8959878,,,train,sda-all,samples/GSE295862/GSM8959878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM8959879,GSE295862,GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adipose tissue,luna,UBERON:0001013,adipose tissue,Periumbilical Adipose Tissue,primary tissue,,,normal,luna,,Lean,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,2711,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000250501002004,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40634602,,GSM8959879,,,train,sda-all,samples/GSE295862/GSM8959879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8959880,GSE295862,GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adipose tissue,luna,UBERON:0001013,adipose tissue,Periumbilical Adipose Tissue,primary tissue,,,normal,luna,,Lean,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4144,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499983977293536,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40634602,,GSM8959880,,,train,sda-all,samples/GSE295862/GSM8959880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM8959881,GSE295862,GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adipose tissue,luna,UBERON:0001013,adipose tissue,Periumbilical Adipose Tissue,primary tissue,,,normal,luna,,Lean,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5663,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948464234178,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40634602,,GSM8959881,,,train,sda-all,samples/GSE295862/GSM8959881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8959881,GSE295862,GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adipose tissue,luna,UBERON:0001013,adipose tissue,Periumbilical Adipose Tissue,primary tissue,,,normal,luna,,Lean,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5663,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999484642341785,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40634602,,GSM8959881,,,train,sda-all,samples/GSE295862/GSM8959881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8962609,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,Vehicle,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2987,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.3496786098020666,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962609,,,train,sda-all,samples/GSE295967/GSM8962609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM8962610,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,Vehicle,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2951,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.787454116576571,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962610,,,train,sda-all,samples/GSE295967/GSM8962610,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM8962611,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,AMG 510,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2830,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.786481013843607,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962611,,,train,sda-all,samples/GSE295967/GSM8962611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM8962611,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,AMG 510,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2830,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.7864810138436065,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962611,,,train,sda-all,samples/GSE295967/GSM8962611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8962612,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,AMG 510,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2552,32285,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.784932514314309,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962612,,,train,sda-all,samples/GSE295967/GSM8962612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8962613,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,AMG 510 + anti-PD-1,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1992,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.542941496166603,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962613,,,train,sda-all,samples/GSE295967/GSM8962613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM8962614,GSE295967,GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Implanted CT26-KRAS-G12C tumors into Balb/C mice,xenograft,MONDO:0005070,neoplasm,disease,luna,,AMG 510 + anti-PD-1,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2325,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.543027236420451,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8962614,,,train,sda-all,samples/GSE295967/GSM8962614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -7328,15 +7328,15 @@ GSM9394261,GSE296053,GSE296053,Eosinophils Orchestrate Intestinal Remodeling and GSM8965605,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,81675,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500015060240964,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965605,,,test,sda-all,samples/GSE296134/GSM8965605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.84, ""life_stage"": 0.98}",, GSM8965606,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-1.7.1.0,cell,101394,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000088422541853,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965606,,,test,sda-all,samples/GSE296134/GSM8965606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 0.99}",, GSM8965607,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,99608,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941023826374,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965607,,,test,sda-all,samples/GSE296134/GSM8965607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 0.99}",, -GSM8965608,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,93700,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944891436129,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965608,,,test,sda-all,samples/GSE296134/GSM8965608,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.89, ""life_stage"": 0.99}",, +GSM8965608,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,93700,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999448914361294,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965608,,,test,sda-all,samples/GSE296134/GSM8965608,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.89, ""life_stage"": 0.99}",, GSM8965609,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,97546,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890158172232,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965609,,,test,sda-all,samples/GSE296134/GSM8965609,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.96, ""life_stage"": 0.99}",, GSM8965610,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,99260,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500001376121539,VERIFIED,VERIFIED,FAILED,,,VERIFIED,PASS,,,40780964,,GSM8965610,,,test,sda-all,samples/GSE296134/GSM8965610,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 0.99}",, -GSM8965611,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.9.0.0,cell,128859,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999959733087896,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965611,,,test,sda-all,samples/GSE296134/GSM8965611,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM8965611,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,male,M,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.9.0.0,cell,128859,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999597330878964,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965611,,,test,sda-all,samples/GSE296134/GSM8965611,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM8965612,GSE296134,GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001890,forebrain,"brain, forebrain",primary tissue,,,normal,luna,,,adult,luna,adult,adult,female,F,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.9.0.0,cell,126621,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499992892220212,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40780964,,GSM8965612,,,test,sda-all,samples/GSE296134/GSM8965612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM8967906,GSE296275,GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,primary tissue,,,perturbation,luna,,LCMV Armstrong,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,43522,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103637682661,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8967906,,,train,sda-all,samples/GSE296275/GSM8967906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8967907,GSE296275,GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,primary tissue,,,perturbation,luna,,LCMV Armstrong,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34077,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000059999127285,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8967907,,,train,sda-all,samples/GSE296275/GSM8967907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8967908,GSE296275,GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,primary tissue,,,perturbation,luna,,LCMV Armstrong,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55204,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999882739212007,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8967908,,,train,sda-all,samples/GSE296275/GSM8967908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8967909,GSE296275,GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,primary tissue,,,perturbation,luna,,LCMV Armstrong,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59574,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999902046147148,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8967909,,,train,sda-all,samples/GSE296275/GSM8967909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8967909,GSE296275,GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,Prostate,primary tissue,,,perturbation,luna,,LCMV Armstrong,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59574,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999020461471483,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM8967909,,,train,sda-all,samples/GSE296275/GSM8967909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8968321,GSE296301,GSE296301,Transient Senescence Following Myocardial Infarction: Characterization and Functional Implications in Cardiac Remodeling [SpatialTranscriptome],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,frozen heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3177,19465,counts,um,1.0,verified,True,fluorescence: red (heuristic),3.5033931959358457,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain and modality should be stated; this is not H&E,,,GSM8968321,,,train,sda-all,samples/GSE296301/GSM8968321,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8968322,GSE296301,GSE296301,Transient Senescence Following Myocardial Infarction: Characterization and Functional Implications in Cardiac Remodeling [SpatialTranscriptome],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,frozen heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2972,19465,counts,um,1.0,verified,True,fluorescence: green (heuristic),3.657975293332807,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,stain and modality should be stated; this is not H&E,,,GSM8968322,,,train,sda-all,samples/GSE296301/GSM8968322,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8968701,GSE296331,GSE296331,Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small Intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219675,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000095401640908,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40967215,,GSM8968701,,,val,sda-all,samples/GSE296331/GSM8968701,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7363,11 +7363,11 @@ GSM8972327,GSE296545,GSE296545,Spatial transcriptomic profiling of gene expressi GSM8972328,GSE296545,GSE296545,Spatial transcriptomic profiling of gene expression alterations following ACBP/DBI inhibition in a MASH-Driven HCC mouse model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007027;MONDO:0007256,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,Dbi-/-,not stated,luna,not stated,,male,male,GSE296545:donor_Dbi_minus,donor_Dbi_minus,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4395,32589,counts,pixel,7.321293005268512,platform_constant,True,H&E,7.321293005268512,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40628264,10.1016/j.xcrm.2025.102232,GSM8972328,,,train,hesrt,samples/GSE296545/GSM8972328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.72, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8972329,GSE296545,GSE296545,Spatial transcriptomic profiling of gene expression alterations following ACBP/DBI inhibition in a MASH-Driven HCC mouse model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,tumour tissue,MONDO:0007256;MONDO:0007027,hepatocellular carcinoma;metabolic dysfunction-associated steatohepatitis,disease,luna,hepatocellular carcinoma,KLH,not stated,luna,not stated,,male,male,GSE296545:donor_KLH,donor_KLH,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,32589,counts,pixel,8.029829257599834,platform_constant,True,H&E,8.029829257599834,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40628264,10.1016/j.xcrm.2025.102232,GSM8972329,,,train,hesrt,samples/GSE296545/GSM8972329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM8972330,GSE296545,GSE296545,Spatial transcriptomic profiling of gene expression alterations following ACBP/DBI inhibition in a MASH-Driven HCC mouse model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007027;MONDO:0007256,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma,disease,luna,hepatocellular carcinoma,KLH-ACBP,not stated,luna,not stated,,male,male,GSE296545:donor_KLH_ACBP,donor_KLH_ACBP,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4664,32589,counts,pixel,7.193718704158121,platform_constant,True,H&E,7.193718704158121,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40628264,10.1016/j.xcrm.2025.102232,GSM8972330,,,train,hesrt,samples/GSE296545/GSM8972330,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 0.75, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9448977,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,6701,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999923013754875,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448977,,,train,sda-all,samples/GSE296577/GSM9448977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9448978,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,2945,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999923013754875,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448978,,,train,sda-all,samples/GSE296577/GSM9448978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9448977,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,6701,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999230137548756,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448977,,,train,sda-all,samples/GSE296577/GSM9448977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9448978,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,2945,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999230137548756,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448978,,,train,sda-all,samples/GSE296577/GSM9448978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9448979,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,CAN-3110,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-2.0.0.10,cell,57012,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000155012056493,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448979,,,train,sda-all,samples/GSE296577/GSM9448979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9448980,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,11762,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000102613216582,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448980,,,train,sda-all,samples/GSE296577/GSM9448980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9448981,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,2424,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999558063638835,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448981,,,train,sda-all,samples/GSE296577/GSM9448981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9448981,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,2424,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49995580636388354,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448981,,,train,sda-all,samples/GSE296577/GSM9448981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9448982,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,1089,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000455097087378,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448982,,,train,sda-all,samples/GSE296577/GSM9448982,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9448983,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,CAN-3110,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-2.0.0.10,cell,284177,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999959858702633,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448983,,,train,sda-all,samples/GSE296577/GSM9448983,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9448984,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,24116,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999778881480474,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448984,,,train,sda-all,samples/GSE296577/GSM9448984,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -7375,7 +7375,7 @@ GSM9448985,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity aga GSM9448986,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.3.0.1,cell,8105,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000487379437718,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448986,,,train,sda-all,samples/GSE296577/GSM9448986,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9448987,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,CAN-3110,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.3.0.1,cell,180768,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,41679299,,GSM9448987,,,train,sda-all,samples/GSE296577/GSM9448987,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9448988,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,1997,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500091389114541,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448988,,,train,sda-all,samples/GSE296577/GSM9448988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9448989,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,69302,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999861942015646,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448989,,,train,sda-all,samples/GSE296577/GSM9448989,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9448989,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.0.0.15,cell,69302,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998619420156465,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448989,,,train,sda-all,samples/GSE296577/GSM9448989,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9448990,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,recurrent glioblastoma,CAN-3110,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-2.0.0.10,cell,785959,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.50000859421552,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448990,,,train,sda-all,samples/GSE296577/GSM9448990,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9448991,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.3.0.1,cell,28554,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998903615632,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448991,,,train,sda-all,samples/GSE296577/GSM9448991,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9448992,GSE296577,GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain tumor,tumour tissue,MONDO:0021211;MONDO:0018177,brain neoplasm;glioblastoma,disease,luna,,CAN-3110,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hBrain_100g,xenium-3.3.0.1,cell,346305,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999971364427746,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41679299,,GSM9448992,,,train,sda-all,samples/GSE296577/GSM9448992,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, @@ -7388,7 +7388,7 @@ GSM8972900,GSE296581,GSE296581,Mouse uterine gene expressions during decidual pr GSM8972901,GSE296581,GSE296581,Mouse uterine gene expressions during decidual processes [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Wwtr1-flox/flox;Pgr-Cre/+,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,946,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.279248130479928,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42154563,,GSM8972901,,,train,sda-all,samples/GSE296581/GSM8972901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 0.49}",life_stage,low_confidence_annotation GSM8972902,GSE296581,GSE296581,Mouse uterine gene expressions during decidual processes [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Mouse uterus,primary tissue,,,perturbation,luna,,Wwtr1-flox/flox;Pgr-Cre/+,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,854,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.27894061130153,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42154563,,GSM8972902,,,train,sda-all,samples/GSE296581/GSM8972902,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 0.78}",, GSM8972903,GSE296582,GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,pancreatitis,"HBP1flox/flox, 24hrs after cerulein",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,353,19465,counts,pixel,3.506609184699931,platform_constant,True,H&E,3.506609184699931,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404099,,GSM8972903,,,train,hesrt,samples/GSE296582/GSM8972903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8972904,GSE296582,GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,pancreatitis,"HBP1flox/flox, 24hrs after cerulein",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,324,19465,counts,pixel,3.504882973574376,platform_constant,True,H&E,3.504882973574376,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404099,,GSM8972904,,,train,hesrt,samples/GSE296582/GSM8972904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8972904,GSE296582,GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,pancreatitis,"HBP1flox/flox, 24hrs after cerulein",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,324,19465,counts,pixel,3.5048829735743756,platform_constant,True,H&E,3.5048829735743756,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404099,,GSM8972904,,,train,hesrt,samples/GSE296582/GSM8972904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8972905,GSE296582,GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,pancreatitis,"HBP1flox/flox, 48hrs after cerulein",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,714,19465,counts,pixel,3.512246796993695,platform_constant,True,H&E,3.512246796993695,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404099,,GSM8972905,,,train,hesrt,samples/GSE296582/GSM8972905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8972906,GSE296582,GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,pancreatitis,"p48Cre; HBP1flox/flox, 24hrs after cerulein",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1323,19465,counts,pixel,3.5153807535271304,platform_constant,True,H&E,3.5153807535271304,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404099,,GSM8972906,,,train,hesrt,samples/GSE296582/GSM8972906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8972907,GSE296582,GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0006515,acute pancreatitis,disease,luna,pancreatitis,"p48Cre; HBP1flox/flox, 24hrs after cerulein",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1646,19465,counts,pixel,3.5846816930593994,platform_constant,True,H&E,3.5846816930593994,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40404099,,GSM8972907,,,train,hesrt,samples/GSE296582/GSM8972907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7422,14 +7422,14 @@ GSM8973764,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and GSM8973765,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,,,normal,luna,Non-Diabetic,Non-Diabetic,not stated,luna,not stated,,unknown,,GSE296626:HPAP034,HPAP034,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,699,18085,counts,pixel,2.863753053567416,platform_constant,True,H&E,2.863753053567416,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973765,,,train,hesrt,samples/GSE296626/GSM8973765,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8973766,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,,,normal,luna,Non-Diabetic,Non-Diabetic,not stated,luna,not stated,,unknown,,GSE296626:HPAP036,HPAP036,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2632,18085,counts,pixel,6.321206058987416,platform_constant,True,H&E,6.321206058987416,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973766,,,train,hesrt,samples/GSE296626/GSM8973766,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8973767,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,,,normal,luna,Non-Diabetic,Non-Diabetic,not stated,luna,not stated,,unknown,,GSE296626:HPAP095,HPAP095,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1532,18085,counts,pixel,2.8708074975117897,platform_constant,True,H&E,2.8708074975117897,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973767,,,train,hesrt,samples/GSE296626/GSM8973767,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM8973768,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,,,normal,luna,Non-Diabetic,Non-Diabetic,not stated,luna,not stated,,unknown,,GSE296626:HPAP110,HPAP110,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1816,18085,counts,pixel,3.268640122455212,platform_constant,True,H&E,3.268640122455212,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,40475580;41875135,,GSM8973768,,,train,hesrt,samples/GSE296626/GSM8973768,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8973768,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,,,normal,luna,Non-Diabetic,Non-Diabetic,not stated,luna,not stated,,unknown,,GSE296626:HPAP110,HPAP110,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1816,18085,counts,pixel,3.2686401224552117,platform_constant,True,H&E,3.2686401224552117,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,40475580;41875135,,GSM8973768,,,train,hesrt,samples/GSE296626/GSM8973768,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8973769,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0000569,autoimmune disorder of endocrine system,disease,mondo_predicate,Non-Diabetic Single Autoantibody Positive,Non-Diabetic Single Autoantibody Positive,not stated,luna,not stated,,unknown,,GSE296626:HPAP019,HPAP019,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1637,18085,counts,pixel,4.517508931631093,platform_constant,True,H&E,4.517508931631093,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973769,,,train,hesrt,samples/GSE296626/GSM8973769,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.32, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8973770,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0000569,autoimmune disorder of endocrine system,disease,mondo_predicate,Non-Diabetic Single Autoantibody Positive,Non-Diabetic Single Autoantibody Positive,not stated,luna,not stated,,unknown,,GSE296626:HPAP072,HPAP072,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1071,18085,counts,pixel,3.256766849992147,platform_constant,True,H&E,3.256766849992147,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973770,,,train,hesrt,samples/GSE296626/GSM8973770,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8973771,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,,,normal,luna,Non-Diabetic Single Autoantibody Positive,Non-Diabetic Single Autoantibody Positive,not stated,luna,not stated,,unknown,,GSE296626:HPAP114,HPAP114,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,883,18085,counts,pixel,2.4495947264696727,platform_constant,True,H&E,2.4495947264696727,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973771,,,train,hesrt,samples/GSE296626/GSM8973771,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8973772,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0000569,autoimmune disorder of endocrine system,disease,luna,Non-Diabetic Multiple Autoantibody Positive,Non-Diabetic Multiple Autoantibody Positive,not stated,luna,not stated,,unknown,,GSE296626:HPAP043,HPAP043,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1977,18085,counts,pixel,5.426861760266212,platform_constant,True,H&E,5.426861760266212,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973772,,,train,hesrt,samples/GSE296626/GSM8973772,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM8973772,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0000569,autoimmune disorder of endocrine system,disease,luna,Non-Diabetic Multiple Autoantibody Positive,Non-Diabetic Multiple Autoantibody Positive,not stated,luna,not stated,,unknown,,GSE296626:HPAP043,HPAP043,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1977,18085,counts,pixel,5.4268617602662115,platform_constant,True,H&E,5.4268617602662115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973772,,,train,hesrt,samples/GSE296626/GSM8973772,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8973773,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0000569,autoimmune disorder of endocrine system,disease,luna,Non-Diabetic Multiple Autoantibody Positive,Non-Diabetic Multiple Autoantibody Positive,not stated,luna,not stated,,unknown,,GSE296626:HPAP148,HPAP148,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3648,18085,counts,pixel,4.703517448715571,platform_constant,True,H&E,4.703517448715571,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973773,,,train,hesrt,samples/GSE296626/GSM8973773,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8973774,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0005147,type 1 diabetes mellitus,disease,luna,type 1 diabetes,Type 1 Diabetes,not stated,luna,not stated,,unknown,,GSE296626:HPAP020,HPAP020,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2364,18085,counts,pixel,3.256398687335534,platform_constant,True,H&E,3.256398687335534,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973774,,,train,hesrt,samples/GSE296626/GSM8973774,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8973775,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0005147,type 1 diabetes mellitus,disease,luna,type 1 diabetes,Type 1 Diabetes,not stated,luna,not stated,,unknown,,GSE296626:HPAP149,HPAP149,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2128,18085,counts,pixel,3.376500846766913,platform_constant,True,H&E,3.376500846766913,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973775,,,train,hesrt,samples/GSE296626/GSM8973775,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8973775,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0005147,type 1 diabetes mellitus,disease,luna,type 1 diabetes,Type 1 Diabetes,not stated,luna,not stated,,unknown,,GSE296626:HPAP149,HPAP149,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2128,18085,counts,pixel,3.3765008467669135,platform_constant,True,H&E,3.3765008467669135,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973775,,,train,hesrt,samples/GSE296626/GSM8973775,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8973776,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0005147,type 1 diabetes mellitus,disease,luna,type 1 diabetes,Type 1 Diabetes,not stated,luna,not stated,,unknown,,GSE296626:HPAP032,HPAP032,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,600,18085,counts,pixel,2.249358479650756,platform_constant,True,H&E,2.249358479650756,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973776,,,train,hesrt,samples/GSE296626/GSM8973776,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8973777,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0005147,type 1 diabetes mellitus,disease,luna,type 1 diabetes,Type 1 Diabetes,not stated,luna,not stated,,unknown,,GSE296626:HPAP123,HPAP123,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2475,18085,counts,pixel,3.7762069381402656,platform_constant,True,H&E,3.7762069381402656,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973777,,,train,hesrt,samples/GSE296626/GSM8973777,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8973778,GSE296626,GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002527,pancreatic lymph node,Pancreatic Lymph Node,primary tissue,MONDO:0005147,type 1 diabetes mellitus,disease,luna,type 1 diabetes,Type 1 Diabetes,not stated,luna,not stated,,unknown,,GSE296626:HPAP102,HPAP102,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1528,18085,counts,pixel,3.2682632010574983,platform_constant,True,H&E,3.2682632010574983,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40475580;41875135,,GSM8973778,,,train,hesrt,samples/GSE296626/GSM8973778,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7451,7 +7451,7 @@ GSM8976801,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal GSM8976802,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE296789:Br6522,Br6522,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4974,36601,counts,pixel,6.152667685351862,platform_constant,True,H&E,6.152667685351862,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42241279,,GSM8976802,,,train,hesrt,samples/GSE296789/GSM8976802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM8976803,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE296789:Br6522,Br6522,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4940,36601,counts,pixel,5.380650595137188,platform_constant,True,H&E,5.380650595137188,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42241279,,GSM8976803,,,train,hesrt,samples/GSE296789/GSM8976803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM8976804,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE296789:Br8325,Br8325,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3528,36601,counts,pixel,4.664590578628688,platform_constant,True,H&E,4.664590578628688,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42241279,,GSM8976804,,,train,hesrt,samples/GSE296789/GSM8976804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.85, ""life_stage"": 1.0}",, -GSM8976805,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE296789:Br8492,Br8492,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4151,36601,counts,pixel,4.890432938325239,platform_constant,True,H&E,4.890432938325239,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42241279,,GSM8976805,,,train,hesrt,samples/GSE296789/GSM8976805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.86, ""life_stage"": 1.0}",, +GSM8976805,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE296789:Br8492,Br8492,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4151,36601,counts,pixel,4.8904329383252385,platform_constant,True,H&E,4.8904329383252385,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42241279,,GSM8976805,,,train,hesrt,samples/GSE296789/GSM8976805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.86, ""life_stage"": 1.0}",, GSM8976806,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE296789:Br8667,Br8667,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3908,36601,counts,pixel,4.681491047670626,platform_constant,True,H&E,4.681491047670626,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42241279,,GSM8976806,,,train,hesrt,samples/GSE296789/GSM8976806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.87, ""life_stage"": 1.0}",, GSM8976807,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4249,36601,counts,um,1.0,verified,True,fluorescence: green (heuristic),4.5139635676624215,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,42241279,,GSM8976807,,,train,sda-all,samples/GSE296789/GSM8976807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM8976808,GSE296789,GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain (dACC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4301,36601,counts,um,1.0,verified,True,fluorescence: green (heuristic),4.5115823170404585,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,42241279,,GSM8976808,,,train,sda-all,samples/GSE296789/GSM8976808,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.93, ""life_stage"": 1.0}",, @@ -7465,7 +7465,7 @@ GSM9034881,GSE296797,GSE296797,CD38+CD93+ microglia and macrophages drive neuroi GSM8978581,GSE296852,GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001335,prostatic urethra,prostatic urethra,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,905209,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8978581,,,train,sda-all,samples/GSE296852/GSM8978581,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 0.97}",organ,low_confidence_annotation GSM8978582,GSE296852,GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,prostate,luna,UBERON:0001335,prostatic urethra,prostatic urethra,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,792876,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999891190807799,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8978582,,,train,sda-all,samples/GSE296852/GSM8978582,sda-tissue-disease-2.3,"{""organ"": 0.48, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8978583,GSE296852,GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001334,female urethra,female urethra,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,364870,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092592592592,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8978583,,,train,sda-all,samples/GSE296852/GSM8978583,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8978584,GSE296852,GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001334,female urethra,female urethra,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,870474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999994554088789,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8978584,,,train,sda-all,samples/GSE296852/GSM8978584,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM8978584,GSE296852,GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001334,female urethra,female urethra,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,870474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999945540887897,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM8978584,,,train,sda-all,samples/GSE296852/GSM8978584,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8979564,GSE296896,GSE296896,High-resolution spatial transcriptomics of mouse intestine [Spatial-RNAseq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0000160,intestine,Intestine (proximal),primary tissue,,,perturbation,luna,,Dox induction for 1 week,adult,age rule: age with unit,adult,8 weeks,unknown,,,,fresh frozen,Fresh frozen,BMK S1000,release v3,BMKMANU S3000,sequencing-based,BMKMANU S3000,,,cell,180902,54752,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42373956,,GSM8979564,,,test,sda-all,samples/GSE296896/GSM8979564,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.36, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM8979565,GSE296896,GSE296896,High-resolution spatial transcriptomics of mouse intestine [Spatial-RNAseq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0000160,intestine,Intestine (proximal),primary tissue,,,perturbation,luna,,Dox induction for 1 week,juvenile,age rule: age with unit,juvenile,4 weeks,unknown,,,,fresh frozen,Fresh frozen,BMK S1000,release v3,BMKMANU S3000,sequencing-based,BMKMANU S3000,,,cell,180167,54752,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42373956,,GSM8979565,,,test,sda-all,samples/GSE296896/GSM8979565,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 0.30000000000000004, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM8979566,GSE296896,GSE296896,High-resolution spatial transcriptomics of mouse intestine [Spatial-RNAseq],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0000160,intestine,Intestine (proximal),primary tissue,,,perturbation,luna,,Dox induction for 1 week,juvenile,age rule: age with unit,juvenile,4 weeks,unknown,,,,fresh frozen,Fresh frozen,BMK S1000,release v3,BMKMANU S3000,sequencing-based,BMKMANU S3000,,,cell,147797,54752,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42373956,,GSM8979566,,,test,sda-all,samples/GSE296896/GSM8979566,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -7530,10 +7530,10 @@ GSM9577757,GSE297068,GSE297068,A spatial code governs olfactory receptor choice GSM9579157,GSE297068,GSE297068,A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,luna,UBERON:0005386,olfactory segment of nasal mucosa,whole olfactory mucosa,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,77023,45100,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,42054991,,GSM9579157,,,train,sda-all,samples/GSE297068/GSM9579157,sda-tissue-disease-2.3,"{""organ"": 0.55, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9579158,GSE297068,GSE297068,A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,head and neck,uberon_chain,UBERON:0005386,olfactory segment of nasal mucosa,whole olfactory mucosa,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,98274,39848,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,42054991,,GSM9579158,,,train,sda-all,samples/GSE297068/GSM9579158,sda-tissue-disease-2.3,"{""organ"": 0.55, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM8983431,GSE297081,GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007027;MONDO:0007256,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma,disease,mondo_predicate (Luna: perturbation),hepatocellular carcinoma,EVT0185 treatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4525,19465,counts,pixel,4.692055456682389,platform_constant,True,H&E,4.692055456682389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40739358,,GSM8983431,,,test,hesrt,samples/GSE297081/GSM8983431,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.74, ""disease_status"": 0.31, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8983432,GSE297081,GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,hepatocellular carcinoma,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,19465,counts,pixel,4.465991028877792,platform_constant,True,H&E,4.465991028877792,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40739358,,GSM8983432,,,test,hesrt,samples/GSE297081/GSM8983432,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",,normal_but_disease_text +GSM8983432,GSE297081,GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,hepatocellular carcinoma,Control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,19465,counts,pixel,4.4659910288777915,platform_constant,True,H&E,4.4659910288777915,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40739358,,GSM8983432,,,test,hesrt,samples/GSE297081/GSM8983432,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",,normal_but_disease_text GSM8983433,GSE297081,GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,hepatocellular carcinoma,"wild type, non treatment",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4699,19465,counts,pixel,4.714599598587771,platform_constant,True,H&E,4.714599598587771,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40739358,,GSM8983433,,,test,hesrt,samples/GSE297081/GSM8983433,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",,normal_but_disease_text GSM8983434,GSE297081,GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0007027,metabolic dysfunction-associated steatohepatitis,disease,mondo_predicate (Luna: perturbation),hepatocellular carcinoma,"Acly knockout, non treatment",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4970,19465,counts,pixel,5.401377172552009,platform_constant,True,H&E,5.401377172552009,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40739358,,GSM8983434,,,test,hesrt,samples/GSE297081/GSM8983434,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM8984115,GSE297119,GSE297119,Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002515,periosteum,periosteum,primary tissue,MONDO:0005315,bone fracture,disease,mondo_predicate (Luna: perturbation),,d0,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,10146,19059,counts,pixel,4.215066496421319,platform_constant,True,H&E,4.215066496421319,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40483363,,GSM8984115,,,train,hesrt,samples/GSE297119/GSM8984115,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8984115,GSE297119,GSE297119,Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002515,periosteum,periosteum,primary tissue,MONDO:0005315,bone fracture,disease,mondo_predicate (Luna: perturbation),,d0,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,10146,19059,counts,pixel,4.2150664964213185,platform_constant,True,H&E,4.2150664964213185,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40483363,,GSM8984115,,,train,hesrt,samples/GSE297119/GSM8984115,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8984116,GSE297119,GSE297119,Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002515,periosteum,periosteum,primary tissue,MONDO:0005315,bone fracture,disease,mondo_predicate (Luna: perturbation),,d5,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,6812,19465,counts,pixel,8.094048852977227,platform_constant,True,H&E,8.094048852977227,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40483363,,GSM8984116,,,train,hesrt,samples/GSE297119/GSM8984116,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8984117,GSE297119,GSE297119,Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002515,periosteum,periosteum,primary tissue,MONDO:0005315,bone fracture,disease,mondo_predicate (Luna: perturbation),,d15,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,7260,19465,counts,pixel,9.068572631055238,platform_constant,True,H&E,9.068572631055238,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40483363,,GSM8984117,,,train,hesrt,samples/GSE297119/GSM8984117,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8984652,GSE297144,GSE297144,The HFE H63D variant in pancreatic cancer promotes epithelial-to-mesenchymal transition at the expense of cell cycle,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,HFE WT,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3432,17943,counts,um,1.0,verified,True,fluorescence: magenta (heuristic),4.152719153733554,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8984652,,,train,sda-all,samples/GSE297144/GSM8984652,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.79, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7549,13 +7549,13 @@ GSM8989876,GSE297388,GSE297388,Spatial transcriptomics and scRNA-sequencing on g GSM8989877,GSE297388,GSE297388,Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,C57BL/6J-mdx,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2511,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.511266052437389,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42067923,,GSM8989877,,,train,sda-all,samples/GSE297388/GSM8989877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8989878,GSE297388,GSE297388,Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,Skeletal Muscle,primary tissue,MONDO:0010679,Duchenne muscular dystrophy,disease,luna,,D2.B10-mdx,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1574,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.506525192801236,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42067923,,GSM8989878,,,train,sda-all,samples/GSE297388/GSM8989878,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM8992213,GSE297459,GSE297459,Human bladder cell spatial mapping,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,bladder,primary tissue,,,not stated,luna,,,adult,age rule: age in years,adult,42 years,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,528538,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000059999127285,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8992213,,,val,sda-all,samples/GSE297459/GSM8992213,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM8995843,GSE297621,GSE297621,Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,,"Atg7 WT (Atg7fl/fl LysM-Cre-/-), NTM infection",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3170,19465,counts,pixel,4.565989593846719,platform_constant,True,H&E,4.565989593846719,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40730835,,GSM8995843,,,train,hesrt,samples/GSE297621/GSM8995843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM8995843,GSE297621,GSE297621,Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,,"Atg7 WT (Atg7fl/fl LysM-Cre-/-), NTM infection",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3170,19465,counts,pixel,4.5659895938467185,platform_constant,True,H&E,4.5659895938467185,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40730835,,GSM8995843,,,train,hesrt,samples/GSE297621/GSM8995843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM8995844,GSE297621,GSE297621,Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005550,infectious disease,disease,luna,,"Atg7 cKO (Atg7fl/fl LysM-Cre+/+), NTM infection",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3801,19465,counts,pixel,5.351522940037312,platform_constant,True,H&E,5.351522940037312,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,40730835,,GSM8995844,,,train,hesrt,samples/GSE297621/GSM8995844,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM8996339,GSE297667,GSE297667,Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,disease,luna,,Lecanemab,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Other,release v3,Nova-ST,sequencing-based,other,,,bin,57800,51348,unknown,um,1.0,verified,False,,,,,,,zero_count_observations,VERIFIED,,,,41286448,,GSM8996339,,,train,sda-all,samples/GSE297667/GSM8996339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.55, ""disease_status"": 0.87, ""uberon"": 0.97, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8996340,GSE297667,GSE297667,Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,disease,luna,,Lecanemab,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Other,release v3,Nova-ST,sequencing-based,other,,,bin,57800,52120,unknown,um,1.0,verified,False,,,,,,,zero_count_observations,VERIFIED,,,,41286448,,GSM8996340,,,train,sda-all,samples/GSE297667/GSM8996340,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.79, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM8996341,GSE297667,GSE297667,Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Brain,xenograft,,,disease,luna,,Lecanemab LALA-PG,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Other,release v3,Nova-ST,sequencing-based,other,,,bin,57800,51589,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41286448,,GSM8996341,,,train,sda-all,samples/GSE297667/GSM8996341,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.62, ""disease_status"": 0.72, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM8996342,GSE297667,GSE297667,Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Brain,xenograft,,,disease,luna,,Lecanemab LALA-PG,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Other,release v3,Nova-ST,sequencing-based,other,,,bin,57800,52343,unknown,um,1.0,verified,False,,,,,,,zero_count_observations,VERIFIED,,,,41286448,,GSM8996342,,,train,sda-all,samples/GSE297667/GSM8996342,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.39, ""disease_status"": 0.71, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM8998316,GSE297745,GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,luna,,anti-PD-1 + anti-CTLA-4,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2503,19465,counts,um,1.0,verified,True,H&E,6.974768160573452,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8998316,,,train,sda-all,samples/GSE297745/GSM8998316,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM8998316,GSE297745,GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,luna,,anti-PD-1 + anti-CTLA-4,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2503,19465,counts,um,1.0,verified,True,H&E,6.9747681605734515,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8998316,,,train,sda-all,samples/GSE297745/GSM8998316,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8998317,GSE297745,GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,luna,,anti-PD-1 + anti-CTLA-4,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3052,19465,counts,um,1.0,verified,True,H&E,6.912943084682962,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8998317,,,train,sda-all,samples/GSE297745/GSM8998317,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8998318,GSE297745,GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,luna,,anti-PD-1 + anti-CTLA-4 + IL-17A neutralizing antbody,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2604,19465,counts,um,1.0,verified,True,H&E,6.97278777450552,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8998318,,,train,sda-all,samples/GSE297745/GSM8998318,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM8998319,GSE297745,GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,mondo_predicate (Luna: perturbation),,anti-PD-1 + anti-CTLA-4 + IL-17A neutralizing antbody,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2585,19465,counts,um,1.0,verified,True,H&E,6.908094803096151,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM8998319,,,train,sda-all,samples/GSE297745/GSM8998319,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7564,7 +7564,7 @@ GSM9002270,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal GSM9002271,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,disease,luna,,,fetal,luna,fetal,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,118634,343,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40502191,,GSM9002271,,,train,sda-all,samples/GSE297945/GSM9002271,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 0.81}",disease_status,low_confidence_annotation GSM9002272,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,disease,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,19020,343,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40502191,,GSM9002272,,,train,sda-all,samples/GSE297945/GSM9002272,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 0.8200000000000001}",, GSM9002273,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,19655,343,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000171303275318,VERIFIED,UNRESOLVED,VERIFIED,,,VERIFIED,PASS,,,40502191,,GSM9002273,,,train,sda-all,samples/GSE297945/GSM9002273,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 0.48}",life_stage,low_confidence_annotation -GSM9002274,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,disease,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,13900,343,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999421296296296,VERIFIED,UNRESOLVED,VERIFIED,,,VERIFIED,PASS,,,40502191,,GSM9002274,,,train,sda-all,samples/GSE297945/GSM9002274,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.98, ""life_stage"": 0.6900000000000001}",, +GSM9002274,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,disease,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,13900,343,counts,um,1.0,verified,True,fluorescence: DAPI,0.49994212962962964,VERIFIED,UNRESOLVED,VERIFIED,,,VERIFIED,PASS,,,40502191,,GSM9002274,,,train,sda-all,samples/GSE297945/GSM9002274,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.98, ""life_stage"": 0.6900000000000001}",, GSM9002275,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0800133,pulmonary hypoplasia,disease,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,45376,343,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40502191,,GSM9002275,,,train,sda-all,samples/GSE297945/GSM9002275,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",, GSM9002276,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0019091,bronchopulmonary dysplasia,disease,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,15367,343,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40502191,,GSM9002276,,,train,sda-all,samples/GSE297945/GSM9002276,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM9002277,GSE297945,GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005453,congenital heart disease,disease,luna,,,neonatal or infant,luna,neonatal or infant,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,24418,343,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000308641975308,VERIFIED,UNRESOLVED,VERIFIED,,,VERIFIED,PASS,,,40502191,,GSM9002277,,,train,sda-all,samples/GSE297945/GSM9002277,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.99}",, @@ -7607,14 +7607,14 @@ GSM9011362,GSE298286,GSE298286,In silico reconstruction of primary and metastati GSM9011363,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1567,18085,counts,pixel,7.308179487351373,platform_constant,True,H&E,7.308179487351373,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011363,,,train,hesrt,samples/GSE298286/GSM9011363,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9011364,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1703,18085,counts,pixel,4.390778009073881,platform_constant,True,H&E,4.390778009073881,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011364,,,train,hesrt,samples/GSE298286/GSM9011364,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9011365,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0002481,bone tissue,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4027,18085,counts,pixel,6.338528946747309,platform_constant,True,H&E,6.338528946747309,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011365,,,train,hesrt,samples/GSE298286/GSM9011365,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9011366,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0002481,bone tissue,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,483,18085,counts,pixel,3.6054826743426394,platform_constant,True,H&E,3.6054826743426394,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011366,,,train,hesrt,samples/GSE298286/GSM9011366,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9011366,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0002481,bone tissue,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,483,18085,counts,pixel,3.6054826743426385,platform_constant,True,H&E,3.6054826743426385,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011366,,,train,hesrt,samples/GSE298286/GSM9011366,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9011367,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4102,18085,counts,pixel,4.85423643425462,platform_constant,True,H&E,4.85423643425462,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011367,,,train,hesrt,samples/GSE298286/GSM9011367,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9011368,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0001474,bone element,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,metastatic breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,816,18085,counts,pixel,3.2174916738739565,platform_constant,True,H&E,3.2174916738739565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011368,,,train,hesrt,samples/GSE298286/GSM9011368,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9011369,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,978,18085,counts,pixel,7.985869972222098,platform_constant,True,H&E,7.985869972222098,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011369,,,train,hesrt,samples/GSE298286/GSM9011369,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9011370,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1911,18085,counts,pixel,6.571618986493895,platform_constant,True,H&E,6.571618986493895,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011370,,,train,hesrt,samples/GSE298286/GSM9011370,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9011370,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1911,18085,counts,pixel,6.5716189864938945,platform_constant,True,H&E,6.5716189864938945,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011370,,,train,hesrt,samples/GSE298286/GSM9011370,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9011371,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.81124004738677,platform_constant,True,H&E,10.81124004738677,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011371,,,train,hesrt,samples/GSE298286/GSM9011371,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9011372,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,10.733673573182411,platform_constant,True,H&E,10.733673573182411,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011372,,,train,hesrt,samples/GSE298286/GSM9011372,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9011373,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4651,18085,counts,pixel,3.291112197472273,platform_constant,True,H&E,3.291112197472273,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,41734374,,GSM9011373,,,train,hesrt,samples/GSE298286/GSM9011373,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9011373,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,breast cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4651,18085,counts,pixel,3.2911121974722732,platform_constant,True,H&E,3.2911121974722732,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,41734374,,GSM9011373,,,train,hesrt,samples/GSE298286/GSM9011373,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9011374,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0002481,bone tissue,Bone metastatic breast tumor,metastasis,MONDO:0021100;MONDO:0024883,breast neoplasm;metastatic neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1211,18120,counts,pixel,6.961064969034329,platform_constant,True,H&E,6.961064969034329,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011374,,,train,hesrt,samples/GSE298286/GSM9011374,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9011376,GSE298286,GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,Primary breast tumor,tumour tissue,MONDO:0021100,breast neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4926,18120,counts,pixel,6.254582672007621,platform_constant,True,H&E,6.254582672007621,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41734374,,GSM9011376,,,train,hesrt,samples/GSE298286/GSM9011376,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9011925,GSE298314,GSE298314,Microglia-astrocyte crosstalk regulates synapse remodeling via Wnt signaling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0010415,barrel cortex,Barrel cortex,primary tissue,,,perturbation,luna,,Whisker lesioning of right snout at P4,neonatal or infant,age rule: postnatal day,neonatal or infant,P5,male,Male,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,210307,180,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40934914,,GSM9011925,,,val,sda-all,samples/GSE298314/GSM9011925,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7700,7 +7700,7 @@ GSM9031089,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sap GSM9031090,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,823,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.6182607082662974,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9031090,,,val,sda-all,samples/GSE299027/GSM9031090,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9031091,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2022,18085,counts,um,1.0,verified,True,H&E-like (heuristic),5.533402568801713,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9031091,,,val,sda-all,samples/GSE299027/GSM9031091,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9031092,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,805,18085,counts,um,1.0,verified,True,H&E-like (heuristic),1.835548268003098,UNRESOLVED,ABSENT,ABSENT,image_partial_coverage,zero_count_observations,VERIFIED,PASS,,,,,GSM9031092,,,val,sda-all,samples/GSE299027/GSM9031092,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9031093,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2465,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.376315615494447,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9031093,,,val,sda-all,samples/GSE299027/GSM9031093,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.86, ""life_stage"": 1.0}",, +GSM9031093,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2465,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.3763156154944465,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9031093,,,val,sda-all,samples/GSE299027/GSM9031093,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.86, ""life_stage"": 1.0}",, GSM9031094,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2268,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.34479370439839,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9031094,,,val,sda-all,samples/GSE299027/GSM9031094,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 1.0}",, GSM9031095,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2471,18085,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9031095,,,val,sda-all,samples/GSE299027/GSM9031095,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 1.0}",, GSM9031096,GSE299027,GSE299027,Molecular Characterization of Meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Fresh frozen human surgical samples,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1196,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.7933869625432814,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9031096,,,val,sda-all,samples/GSE299027/GSM9031096,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -7720,22 +7720,22 @@ GSM9035024,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of m GSM9035025,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,primary tissue,,,normal,luna,,Ctrl,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75265,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000064770195346,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035025,,,train,sda-all,samples/GSE299193/GSM9035025,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9035026,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,primary tissue,,,normal,luna,,Ctrl,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,98646,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.499966958113054,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035026,,,train,sda-all,samples/GSE299193/GSM9035026,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9035027,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,primary tissue,MONDO:0004225;MONDO:0000621;MONDO:0004959,monoclonal gammopathy of uncertain significance;immune system cancer;plasma cell neoplasm,disease,luna,,MGUS,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,162109,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917159109737,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035027,,,train,sda-all,samples/GSE299193/GSM9035027,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.62, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9035028,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,primary tissue,MONDO:0004225;MONDO:0000621;MONDO:0004959,monoclonal gammopathy of uncertain significance;immune system cancer;plasma cell neoplasm,disease,luna,,MGUS,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,172708,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999793899422918,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035028,,,train,sda-all,samples/GSE299193/GSM9035028,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.62, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9035028,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,primary tissue,MONDO:0004225;MONDO:0000621;MONDO:0004959,monoclonal gammopathy of uncertain significance;immune system cancer;plasma cell neoplasm,disease,luna,,MGUS,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,172708,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997938994229185,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035028,,,train,sda-all,samples/GSE299193/GSM9035028,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.62, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9035029,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,160479,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991935483871,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035029,,,train,sda-all,samples/GSE299193/GSM9035029,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9035030,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,150922,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000017027652909,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035030,,,train,sda-all,samples/GSE299193/GSM9035030,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9035031,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,124488,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999861985204814,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035031,,,train,sda-all,samples/GSE299193/GSM9035031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9035031,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,124488,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998619852048143,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035031,,,train,sda-all,samples/GSE299193/GSM9035031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9035032,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68334,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000029491565412,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035032,,,train,sda-all,samples/GSE299193/GSM9035032,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9035033,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,42857,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000154830718414,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035033,,,train,sda-all,samples/GSE299193/GSM9035033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9035034,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,136914,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.499969304229195,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035034,,,train,sda-all,samples/GSE299193/GSM9035034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9035034,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,136914,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996930422919506,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035034,,,train,sda-all,samples/GSE299193/GSM9035034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9035035,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57291,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000350140056022,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035035,,,train,sda-all,samples/GSE299193/GSM9035035,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9035036,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,99208,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982719690337,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035036,,,train,sda-all,samples/GSE299193/GSM9035036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9035036,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,99208,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999827196903374,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035036,,,train,sda-all,samples/GSE299193/GSM9035036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9035037,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69669,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000056420672534,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035037,,,train,sda-all,samples/GSE299193/GSM9035037,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9035038,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,31873,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.499988623200397,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035038,,,train,sda-all,samples/GSE299193/GSM9035038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9035038,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,MM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,31873,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998862320039705,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035038,,,train,sda-all,samples/GSE299193/GSM9035038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9035039,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,65476,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896983682216,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035039,,,train,sda-all,samples/GSE299193/GSM9035039,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.73, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9035040,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,89052,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999632533072023,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035040,,,train,sda-all,samples/GSE299193/GSM9035040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.75, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9035041,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27271,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999846311475409,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035041,,,train,sda-all,samples/GSE299193/GSM9035041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9035040,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,89052,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996325330720237,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035040,,,train,sda-all,samples/GSE299193/GSM9035040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.75, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9035041,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27271,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998463114754094,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035041,,,train,sda-all,samples/GSE299193/GSM9035041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9035042,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102798,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000234741784038,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035042,,,train,sda-all,samples/GSE299193/GSM9035042,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.88, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9035043,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,29613,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999952204945194,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035043,,,train,sda-all,samples/GSE299193/GSM9035043,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9035043,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0005235,smoldering plasma cell myeloma,disease,luna,,SM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,29613,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999522049451944,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035043,,,train,sda-all,samples/GSE299193/GSM9035043,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9035044,GSE299193+GSE299207,GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,bone marrow,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,RM,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54315,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917776681466,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035044,,,train,sda-all,samples/GSE299193/GSM9035044,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9035090,GSE299207,GSE299207,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone marrow,luna,UBERON:0002371,bone marrow,,primary tissue,,,normal,luna,,Ctrl,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,246079,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961200206932,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,40643106,,GSM9035090,,,train,sda-all,samples/GSE299207/GSM9035090,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM8983566,GSE299256,GSE299256,Positionally distinct interferon-stimulated dermal immune-acting fibroblasts promote neutrophil recruitment in Sweet's syndrome.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,cosmx,,,cell,71399,1013,counts,pixel,,unresolved,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,40516577,,GSM8983566,,,train,sda-all,samples/GSE299256/GSM8983566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.21, ""uberon"": 0.34, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation @@ -7807,7 +7807,7 @@ GSM9043135,GSE299660,GSE299660,Spatial transcriptomic profiling of seborrhoeic k GSM9043136,GSE299660,GSE299660,Spatial transcriptomic profiling of seborrhoeic keratoses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,tumour tissue,MONDO:0006566,keratosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3808,18085,counts,um,1.0,verified,True,H&E-like (heuristic),8.045761447701388,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42413572,,GSM9043136,,,train,sda-all,samples/GSE299660/GSM9043136,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.99, ""uberon"": 0.55, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9045881,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0020683,acute disease,disease,mondo_predicate (Luna: perturbation),,intracoronary infusion of saline,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3269,25399,counts,pixel,4.781624464973892,platform_constant,True,H&E,4.781624464973892,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045881,,,train,hesrt,samples/GSE299772/GSM9045881,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9045882,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0020683,acute disease,disease,mondo_predicate,,intracoronary infusion of saline,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3880,25399,counts,pixel,4.769565365247829,platform_constant,True,H&E,4.769565365247829,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045882,,,train,hesrt,samples/GSE299772/GSM9045882,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9045883,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0004781,acute myocardial infarction,disease,luna,,intracoronary infusion of iECM,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4465,25399,counts,pixel,4.678623380907752,platform_constant,True,H&E,4.678623380907752,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045883,,,train,hesrt,samples/GSE299772/GSM9045883,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9045883,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0004781,acute myocardial infarction,disease,luna,,intracoronary infusion of iECM,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4465,25399,counts,pixel,4.6786233809077515,platform_constant,True,H&E,4.6786233809077515,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045883,,,train,hesrt,samples/GSE299772/GSM9045883,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9045884,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0004781,acute myocardial infarction,disease,luna,,intracoronary infusion of iECM,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3553,25399,counts,pixel,5.114827085110209,platform_constant,True,H&E,5.114827085110209,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045884,,,train,hesrt,samples/GSE299772/GSM9045884,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9045885,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,MONDO:0020683,acute disease,disease,mondo_predicate,,intracoronary infusion of saline,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3787,25399,counts,pixel,4.515328489278397,platform_constant,True,H&E,4.515328489278397,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045885,,,train,hesrt,samples/GSE299772/GSM9045885,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9045886,GSE299772,GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,heart,luna,UBERON:0000948,heart,cardiac,primary tissue,,,normal,luna,,intracoronary infusion of saline,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3685,25399,counts,pixel,5.567004586422417,platform_constant,True,H&E,5.567004586422417,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41292930;41414646,,GSM9045886,,,train,hesrt,samples/GSE299772/GSM9045886,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7843,17 +7843,17 @@ GSM9052319,GSE300007,GSE300007,Comparison of imaging based single-cell resolutio GSM9052320,GSE300007,GSE300007,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,134530,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,ABSENT,,,VERIFIED,,,,41006245,,GSM9052320,,,train,sda-all,samples/GSE300007/GSM9052320,sda-tissue-disease-2.3,"{""organ"": 0.62, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9052321,GSE300007,GSE300007,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86150,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,ABSENT,,,VERIFIED,,,,41006245,,GSM9052321,,,train,sda-all,samples/GSE300007/GSM9052321,sda-tissue-disease-2.3,"{""organ"": 0.34, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.24, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation GSM9052322,GSE300007,GSE300007,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,72028,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,ABSENT,,,VERIFIED,,,,41006245,,GSM9052322,,,train,sda-all,samples/GSE300007/GSM9052322,sda-tissue-disease-2.3,"{""organ"": 0.48, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM9052535,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,mondo_predicate,,Control,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2196,19465,counts,um,1.0,verified,True,H&E-like (heuristic),13.552991489582968,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052535,,,train,sda-all,samples/GSE300023/GSM9052535,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9052535,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,mondo_predicate,,Control,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2196,19465,counts,um,1.0,verified,True,H&E-like (heuristic),13.552991489582967,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052535,,,train,sda-all,samples/GSE300023/GSM9052535,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9052536,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,luna,,mAb pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2334,19465,counts,um,1.0,verified,True,H&E-like (heuristic),13.552515488600005,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052536,,,train,sda-all,samples/GSE300023/GSM9052536,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9052537,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,luna,,SARS-CoV-2 virus challenge,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2445,19465,counts,um,1.0,verified,True,H&E-like (heuristic),15.245612526168024,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052537,,,train,sda-all,samples/GSE300023/GSM9052537,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9052538,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,luna,,mAb pre-treatment & SARS-CoV-2 virus challenge,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2225,19465,counts,um,1.0,verified,True,H&E-like (heuristic),13.550725978414862,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052538,,,train,sda-all,samples/GSE300023/GSM9052538,sda-tissue-disease-2.4,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9052539,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,mondo_predicate,,Control,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2237,19465,counts,um,1.0,verified,True,H&E-like (heuristic),13.542627441460256,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052539,,,train,sda-all,samples/GSE300023/GSM9052539,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9052540,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,luna,,mAb pre-treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2245,19465,counts,um,1.0,verified,True,H&E-like (heuristic),14.257446163582312,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052540,,,train,sda-all,samples/GSE300023/GSM9052540,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9052542,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,luna,,mAb pre-treatment & SARS-CoV-2 virus challenge,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2393,19465,counts,um,1.0,verified,True,H&E-like (heuristic),14.272105748643597,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052542,,,train,sda-all,samples/GSE300023/GSM9052542,sda-tissue-disease-2.4,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9053839,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,44,female,female,GSE300112:P020,P020,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2966,36601,counts,pixel,4.053700433331335,platform_constant,True,H&E,4.053700433331335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053839,,,train,hesrt,samples/GSE300112/GSM9053839,sda-tissue-disease-2.3,"{""organ"": 0.75, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9053840,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,47,female,female,GSE300112:P045,P045,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,697,36601,counts,pixel,4.053700433331335,platform_constant,True,H&E,4.053700433331335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053840,,,train,hesrt,samples/GSE300112/GSM9053840,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9053841,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,30,female,female,GSE300112:P050,P050,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1692,36601,counts,pixel,4.053700433331335,platform_constant,True,H&E,4.053700433331335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053841,,,train,hesrt,samples/GSE300112/GSM9053841,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9053842,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,32,female,female,GSE300112:P057,P057,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2387,36601,counts,pixel,4.053700433331335,platform_constant,True,H&E,4.053700433331335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053842,,,train,hesrt,samples/GSE300112/GSM9053842,sda-tissue-disease-2.3,"{""organ"": 0.52, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM9052542,GSE300023,GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0100096,COVID-19,disease,luna,,mAb pre-treatment & SARS-CoV-2 virus challenge,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2393,19465,counts,um,1.0,verified,True,H&E-like (heuristic),14.272105748643595,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9052542,,,train,sda-all,samples/GSE300023/GSM9052542,sda-tissue-disease-2.4,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9053839,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,44,female,female,GSE300112:P020,P020,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2966,36601,counts,pixel,4.0537004333313345,platform_constant,True,H&E,4.0537004333313345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053839,,,train,hesrt,samples/GSE300112/GSM9053839,sda-tissue-disease-2.3,"{""organ"": 0.75, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9053840,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,47,female,female,GSE300112:P045,P045,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,697,36601,counts,pixel,4.0537004333313345,platform_constant,True,H&E,4.0537004333313345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053840,,,train,hesrt,samples/GSE300112/GSM9053840,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9053841,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,30,female,female,GSE300112:P050,P050,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1692,36601,counts,pixel,4.0537004333313345,platform_constant,True,H&E,4.0537004333313345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053841,,,train,hesrt,samples/GSE300112/GSM9053841,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9053842,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L1,adult,age rule: bare number read as years,not stated,32,female,female,GSE300112:P057,P057,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2387,36601,counts,pixel,4.0537004333313345,platform_constant,True,H&E,4.0537004333313345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053842,,,train,hesrt,samples/GSE300112/GSM9053842,sda-tissue-disease-2.3,"{""organ"": 0.52, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9053843,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L3,adult,age rule: bare number read as years,not stated,43,female,female,GSE300112:P001,P001,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1379,36601,counts,pixel,4.185886509912579,platform_constant,True,H&E,4.185886509912579,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053843,,,train,hesrt,samples/GSE300112/GSM9053843,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9053844,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L3,adult,age rule: bare number read as years,not stated,48,female,female,GSE300112:P014,P014,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1988,36601,counts,pixel,4.185886509912564,platform_constant,True,H&E,4.185886509912564,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053844,,,train,hesrt,samples/GSE300112/GSM9053844,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9053845,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,uberon_chain,UBERON:0012249,ectocervix,ectocervix,primary tissue,,,normal,luna,,L3,adult,age rule: bare number read as years,not stated,48,female,female,GSE300112:P018,P018,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1808,36601,counts,pixel,4.185886509912559,platform_constant,True,H&E,4.185886509912559,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41218071,,GSM9053845,,,train,hesrt,samples/GSE300112/GSM9053845,sda-tissue-disease-2.3,"{""organ"": 0.5700000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",organ,low_confidence_annotation @@ -7865,32 +7865,32 @@ GSM9053850,GSE217237+GSE300112,GSE300112,The cervicovaginal microbiome associate GSM9054471,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27775,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999914277876834,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054471,,,train,sda-all,samples/GSE300147/GSM9054471,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054472,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,175174,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092890760466,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054472,,,train,sda-all,samples/GSE300147/GSM9054472,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9054473,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,268328,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000008611780916,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054473,,,train,sda-all,samples/GSE300147/GSM9054473,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9054474,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,63982,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845594290419,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054474,,,train,sda-all,samples/GSE300147/GSM9054474,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9054474,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,63982,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998455942904196,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054474,,,train,sda-all,samples/GSE300147/GSM9054474,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054475,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,43759,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999814936667215,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054475,,,train,sda-all,samples/GSE300147/GSM9054475,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054476,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34060,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020549071181,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054476,,,train,sda-all,samples/GSE300147/GSM9054476,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9054477,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,29743,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999589827727645,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054477,,,train,sda-all,samples/GSE300147/GSM9054477,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9054478,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,31707,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000147284081536,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054478,,,train,sda-all,samples/GSE300147/GSM9054478,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9054479,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,62220,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999865802295812,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054479,,,train,sda-all,samples/GSE300147/GSM9054479,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9054480,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86435,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896875322264,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054480,,,train,sda-all,samples/GSE300147/GSM9054480,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9054479,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,62220,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998658022958126,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054479,,,train,sda-all,samples/GSE300147/GSM9054479,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9054480,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86435,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998968753222645,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054480,,,train,sda-all,samples/GSE300147/GSM9054480,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9054481,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23496,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000164500740253,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054481,,,train,sda-all,samples/GSE300147/GSM9054481,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9054482,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59995,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961336220228,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054482,,,train,sda-all,samples/GSE300147/GSM9054482,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9054482,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59995,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999613362202283,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054482,,,train,sda-all,samples/GSE300147/GSM9054482,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054483,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001051,hypopharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24109,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041118421052,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054483,,,train,sda-all,samples/GSE300147/GSM9054483,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9054484,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001051,hypopharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37878,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000220874072329,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054484,,,train,sda-all,samples/GSE300147/GSM9054484,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054485,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,88466,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000176512120499,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054485,,,train,sda-all,samples/GSE300147/GSM9054485,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9054486,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,39583,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999926453283125,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054486,,,train,sda-all,samples/GSE300147/GSM9054486,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9054486,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,39583,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999264532831256,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054486,,,train,sda-all,samples/GSE300147/GSM9054486,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054487,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51534,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000146370023419,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054487,,,train,sda-all,samples/GSE300147/GSM9054487,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9054488,GSE300147,GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,,tumour tissue,MONDO:0017795;MONDO:0004992,ameloblastoma;cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38672,540,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941141848146,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41961948,,GSM9054488,,,train,sda-all,samples/GSE300147/GSM9054488,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9057740,GSE300289,GSE300289,Early lineage divergence segregates sensory-related and motor-associative identities in the thalamus [Spatial Transcriptomics E17],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Thalamus,primary tissue,,,normal,luna,,ICR/CD-1,embryonic,age rule: embryonic day,embryonic,Embryonic day 17.5,unknown,,,,,,Slide-seq,release v3,Slide-seq,sequencing-based,slide_seq,,,bead,822395,32361,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9057740,,,train,sda-all,samples/GSE300289/GSM9057740,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9057760,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,11 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3277,19465,counts,pixel,4.324497375281349,platform_constant,True,H&E,4.324497375281349,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057760,,,train,hesrt,samples/GSE300293/GSM9057760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9057761,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2957,19465,counts,pixel,4.19722297954308,platform_constant,True,H&E,4.19722297954308,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057761,,,train,hesrt,samples/GSE300293/GSM9057761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9057761,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2957,19465,counts,pixel,4.1972229795430795,platform_constant,True,H&E,4.1972229795430795,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057761,,,train,hesrt,samples/GSE300293/GSM9057761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9057762,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3262,19465,counts,pixel,4.21443390400474,platform_constant,True,H&E,4.21443390400474,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057762,,,train,hesrt,samples/GSE300293/GSM9057762,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.79, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9057763,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2477,19465,counts,pixel,4.369207408724802,platform_constant,True,H&E,4.369207408724802,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057763,,,train,hesrt,samples/GSE300293/GSM9057763,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9057764,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1772,19465,counts,pixel,4.180011995646503,platform_constant,True,H&E,4.180011995646503,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057764,,,train,hesrt,samples/GSE300293/GSM9057764,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9057765,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2495,19465,counts,pixel,4.24885601013164,platform_constant,True,H&E,4.24885601013164,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057765,,,train,hesrt,samples/GSE300293/GSM9057765,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9057766,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1935,19465,counts,pixel,4.24885601013164,platform_constant,True,H&E,4.24885601013164,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057766,,,train,hesrt,samples/GSE300293/GSM9057766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9057764,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1772,19465,counts,pixel,4.1800119956465025,platform_constant,True,H&E,4.1800119956465025,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057764,,,train,hesrt,samples/GSE300293/GSM9057764,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9057765,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2495,19465,counts,pixel,4.2488560101316395,platform_constant,True,H&E,4.2488560101316395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057765,,,train,hesrt,samples/GSE300293/GSM9057765,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9057766,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1935,19465,counts,pixel,4.2488560101316395,platform_constant,True,H&E,4.2488560101316395,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057766,,,train,hesrt,samples/GSE300293/GSM9057766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9057767,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2908,19465,counts,pixel,4.094082424778427,platform_constant,True,H&E,4.094082424778427,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057767,,,train,hesrt,samples/GSE300293/GSM9057767,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.74, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9057768,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,NNK,adult,age rule: age with unit,adult,4 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3195,19465,counts,pixel,4.042449544515902,platform_constant,True,H&E,4.042449544515902,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057768,,,train,hesrt,samples/GSE300293/GSM9057768,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9057769,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,11 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3658,19465,counts,pixel,4.21983594180178,platform_constant,True,H&E,4.21983594180178,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057769,,,train,hesrt,samples/GSE300293/GSM9057769,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9057769,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,11 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3658,19465,counts,pixel,4.2198359418017795,platform_constant,True,H&E,4.2198359418017795,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057769,,,train,hesrt,samples/GSE300293/GSM9057769,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9057770,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,11 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1884,19465,counts,pixel,4.25463458565372,platform_constant,True,H&E,4.25463458565372,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057770,,,train,hesrt,samples/GSE300293/GSM9057770,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9057771,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,Saline,adult,age rule: age with unit,adult,11 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2705,19465,counts,pixel,4.115187963412145,platform_constant,True,H&E,4.115187963412145,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057771,,,train,hesrt,samples/GSE300293/GSM9057771,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.85, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9057772,GSE300293,GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,mondo_predicate (Luna: perturbation),,Saline,adult,age rule: age with unit,adult,11 months,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3137,19465,counts,pixel,3.9932030148361006,platform_constant,True,H&E,3.9932030148361006,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9057772,,,train,hesrt,samples/GSE300293/GSM9057772,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7911,7 +7911,7 @@ GSM9059353,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi S GSM9059354,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous KS tumor,tumour tissue,MONDO:0005055,Kaposi's sarcoma,disease,luna,Kaposi sarcoma,cutaneous KS tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1332,18066,counts,pixel,4.740454631399772,platform_constant,True,H&E,4.740454631399772,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41342328,,GSM9059354,,,val,hesrt,samples/GSE300380/GSM9059354,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.68, ""life_stage"": 1.0}",, GSM9059355,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous KS tumor,tumour tissue,MONDO:0005055,Kaposi's sarcoma,disease,luna,Kaposi sarcoma,cutaneous KS tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1566,18066,counts,pixel,4.761904761904762,platform_constant,True,H&E,4.761904761904762,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41342328,,GSM9059355,,,val,hesrt,samples/GSE300380/GSM9059355,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9059356,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous KS tumor,tumour tissue,MONDO:0005055,Kaposi's sarcoma,disease,luna,Kaposi sarcoma,cutaneous KS tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1293,36945,counts,pixel,0.3076908511710158,platform_constant,True,H&E,0.5000106371052493,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41342328,,GSM9059356,,,val,hesrt,samples/GSE300380/GSM9059356,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.79, ""life_stage"": 1.0}",, -GSM9059357,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous KS tumor,tumour tissue,MONDO:0005055,Kaposi's sarcoma,disease,luna,Kaposi sarcoma,cutaneous KS tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,989,36945,counts,pixel,0.3086360952378595,platform_constant,True,H&E,0.4999970627756526,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41342328,,GSM9059357,,,val,hesrt,samples/GSE300380/GSM9059357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 0.99}",uberon,low_confidence_annotation +GSM9059357,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous KS tumor,tumour tissue,MONDO:0005055,Kaposi's sarcoma,disease,luna,Kaposi sarcoma,cutaneous KS tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,989,36945,counts,pixel,0.3086360952378595,platform_constant,True,H&E,0.49999706277565265,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41342328,,GSM9059357,,,val,hesrt,samples/GSE300380/GSM9059357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM9059358,GSE300380,GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,cutaneous KS tumor,tumour tissue,MONDO:0005055,Kaposi's sarcoma,disease,luna,Kaposi sarcoma,cutaneous KS tumor,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1089,36945,counts,pixel,0.3076908511710158,platform_constant,True,H&E,0.5000106371052493,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41342328,,GSM9059358,,,val,hesrt,samples/GSE300380/GSM9059358,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.38, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9060605,GSE300434,GSE300434,Migratory astrocyte subset drives CNS regeneration after astrocyte loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0008930,somatosensory cortex,Somatosensory cortex,primary tissue,,,disease,luna,,AQP4-IgG injection,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,234275,19040,counts,um,1.0,verified,True,"fluorescence: single channel, grayscale (heuristic)",0.62351823392168,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42493549,,GSM9060605,,,train,sda-all,samples/GSE300434/GSM9060605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9060606,GSE300434,GSE300434,Migratory astrocyte subset drives CNS regeneration after astrocyte loss,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0008930,somatosensory cortex,Somatosensory cortex,primary tissue,,,perturbation,luna,,AQP4-IgG injection,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,371062,19040,counts,um,1.0,verified,True,"fluorescence: single channel, grayscale (heuristic)",0.6240029316095352,VERIFIED,ABSENT,ABSENT,image_partial_coverage,,VERIFIED,PASS,,,42493549,,GSM9060606,,,train,sda-all,samples/GSE300434/GSM9060606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -7940,7 +7940,7 @@ GSM9066292,GSE300676,GSE300676,Identification of key molecules promoting lepidic GSM9066293,GSE300676,GSE300676,Identification of key molecules promoting lepidic–filigree micropapillary–conventional/overt micropapillary progression in lung adenocarcinoma: A comprehensive gene expression analysis study using the spatial gene expression solution methodology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4463,17943,counts,pixel,4.724179663161129,platform_constant,True,H&E,4.724179663161129,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41040912,,GSM9066293,,,train,hesrt,samples/GSE300676/GSM9066293,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9066294,GSE300676,GSE300676,Identification of key molecules promoting lepidic–filigree micropapillary–conventional/overt micropapillary progression in lung adenocarcinoma: A comprehensive gene expression analysis study using the spatial gene expression solution methodology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4729,17943,counts,pixel,4.7619845044983125,platform_constant,True,H&E,4.7619845044983125,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41040912,,GSM9066294,,,train,hesrt,samples/GSE300676/GSM9066294,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9066295,GSE300676,GSE300676,Identification of key molecules promoting lepidic–filigree micropapillary–conventional/overt micropapillary progression in lung adenocarcinoma: A comprehensive gene expression analysis study using the spatial gene expression solution methodology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3897,17943,counts,um,1.0,verified,False,,,WITHHELD,ABSENT,ABSENT,hesrt_review_fail,,VERIFIED,FAIL,,,41040912,,GSM9066295,,,train,sda-all,samples/GSE300676/GSM9066295,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9066380,GSE300692,GSE300692,Thor: a platform for cell-level investigation of spatial transcriptomics and histology [Bladder Cancer],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Bladder,tumour tissue,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,400147,18085,counts,um,1.0,verified,True,H&E-like (heuristic),5.591354423359999,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40764306,,GSM9066380,,,train,sda-all,samples/GSE300692/GSM9066380,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9066380,GSE300692,GSE300692,Thor: a platform for cell-level investigation of spatial transcriptomics and histology [Bladder Cancer],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Bladder,tumour tissue,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,400147,18085,counts,um,1.0,verified,True,H&E-like (heuristic),5.5913544233599985,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40764306,,GSM9066380,,,train,sda-all,samples/GSE300692/GSM9066380,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9293137,GSE300851,GSE300851,DGAT: A Dual-Graph Attention Network for Inferring Spatial Protein Landscapes from Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,Chronic kidney disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4264,17923,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9293137,,,train,sda-all,samples/GSE300851/GSM9293137,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9293138,GSE300851,GSE300851,DGAT: A Dual-Graph Attention Network for Inferring Spatial Protein Landscapes from Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,Chronic kidney disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4505,17945,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9293138,,,train,sda-all,samples/GSE300851/GSM9293138,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9293139,GSE300851,GSE300851,DGAT: A Dual-Graph Attention Network for Inferring Spatial Protein Landscapes from Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,luna,Chronic kidney disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4928,17925,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9293139,,,train,sda-all,samples/GSE300851/GSM9293139,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -7959,17 +7959,17 @@ GSM9078931,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals reg GSM9078932,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2889,35236,counts,pixel,3.9409912747590097,platform_constant,True,H&E,3.9409912747590097,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078932,,,train,hesrt,samples/GSE301260/GSM9078932,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM9078933,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3205,35236,counts,pixel,3.95358805997216,platform_constant,True,H&E,3.95358805997216,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078933,,,train,hesrt,samples/GSE301260/GSM9078933,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.88}",, GSM9078934,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3405,35236,counts,pixel,3.946389871041147,platform_constant,True,H&E,3.946389871041147,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078934,,,train,hesrt,samples/GSE301260/GSM9078934,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.99, ""life_stage"": 0.8200000000000001}",disease_status,low_confidence_annotation -GSM9078935,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3184,35236,counts,pixel,3.951788525354656,platform_constant,True,H&E,3.951788525354656,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078935,,,train,hesrt,samples/GSE301260/GSM9078935,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.99, ""life_stage"": 0.92}",disease_status,low_confidence_annotation +GSM9078935,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3184,35236,counts,pixel,3.9517885253546563,platform_constant,True,H&E,3.9517885253546563,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078935,,,train,hesrt,samples/GSE301260/GSM9078935,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.99, ""life_stage"": 0.92}",disease_status,low_confidence_annotation GSM9078936,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2658,35236,counts,pixel,3.9553875824027167,platform_constant,True,H&E,3.9553875824027167,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078936,,,train,hesrt,samples/GSE301260/GSM9078936,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 0.85}",disease_status,low_confidence_annotation GSM9078937,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3268,35236,counts,pixel,3.951788525354653,platform_constant,True,H&E,3.951788525354653,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078937,,,train,hesrt,samples/GSE301260/GSM9078937,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.99, ""life_stage"": 0.74}",disease_status,low_confidence_annotation GSM9078938,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3480,35236,counts,pixel,3.939191718031696,platform_constant,True,H&E,3.939191718031696,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078938,,,train,hesrt,samples/GSE301260/GSM9078938,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.44}",life_stage,low_confidence_annotation GSM9078939,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2907,35236,counts,pixel,3.9553875824027167,platform_constant,True,H&E,3.9553875824027167,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078939,,,train,hesrt,samples/GSE301260/GSM9078939,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.98, ""life_stage"": 0.49}",life_stage,low_confidence_annotation GSM9078940,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3583,35236,counts,pixel,3.942790878283373,platform_constant,True,H&E,3.942790878283373,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078940,,,train,hesrt,samples/GSE301260/GSM9078940,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 0.58}",life_stage,low_confidence_annotation -GSM9078941,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2901,35236,counts,pixel,3.944590267083328,platform_constant,True,H&E,3.944590267083328,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078941,,,train,hesrt,samples/GSE301260/GSM9078941,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.37}",life_stage,low_confidence_annotation +GSM9078941,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,status epilepticus,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2901,35236,counts,pixel,3.9445902670833277,platform_constant,True,H&E,3.9445902670833277,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078941,,,train,hesrt,samples/GSE301260/GSM9078941,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.37}",life_stage,low_confidence_annotation GSM9078942,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3027,35236,counts,pixel,3.937392080997424,platform_constant,True,H&E,3.937392080997424,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078942,,,train,hesrt,samples/GSE301260/GSM9078942,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.53, ""uberon"": 0.99, ""life_stage"": 0.28}",disease_status;life_stage,low_confidence_annotation GSM9078943,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3484,35236,counts,pixel,3.9373920809974257,platform_constant,True,H&E,3.9373920809974257,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078943,,,train,hesrt,samples/GSE301260/GSM9078943,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.98, ""life_stage"": 0.38}",disease_status;life_stage,low_confidence_annotation GSM9078944,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3162,35236,counts,pixel,3.942790878283373,platform_constant,True,H&E,3.942790878283373,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078944,,,train,hesrt,samples/GSE301260/GSM9078944,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 0.6000000000000001}",, -GSM9078945,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3098,35236,counts,pixel,3.946389871041149,platform_constant,True,H&E,3.946389871041149,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078945,,,train,hesrt,samples/GSE301260/GSM9078945,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.99, ""life_stage"": 0.34}",disease_status;life_stage,low_confidence_annotation +GSM9078945,GSE301260,GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3098,35236,counts,pixel,3.9463898710411485,platform_constant,True,H&E,3.9463898710411485,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41540500,,GSM9078945,,,train,hesrt,samples/GSE301260/GSM9078945,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.99, ""life_stage"": 0.34}",disease_status;life_stage,low_confidence_annotation GSM9078977,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small intestinal neuroendocrine tumor,tumour tissue,MONDO:0019496,neuroendocrine neoplasm,disease,luna,Small intestinal neuroendocrine tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,979,17943,counts,pixel,4.17327567468889,platform_constant,True,H&E,4.17327567468889,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41779010,10.1158/1078-0432.ccr-25-2854,GSM9078977,,,train,hesrt,samples/GSE301265/GSM9078977,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM9078978,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small intestinal neuroendocrine tumor,tumour tissue,MONDO:0019496,neuroendocrine neoplasm,disease,luna,Small intestinal neuroendocrine tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,972,17943,counts,pixel,4.166379339259518,platform_constant,True,H&E,4.166379339259518,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41779010,10.1158/1078-0432.ccr-25-2854,GSM9078978,,,train,hesrt,samples/GSE301265/GSM9078978,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.77, ""life_stage"": 1.0}",, GSM9078979,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small intestinal neuroendocrine tumor,tumour tissue,MONDO:0019496,neuroendocrine neoplasm,disease,luna,Small intestinal neuroendocrine tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1177,17943,counts,pixel,4.225431196084384,platform_constant,True,H&E,4.225431196084384,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41779010,10.1158/1078-0432.ccr-25-2854,GSM9078979,,,train,hesrt,samples/GSE301265/GSM9078979,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, @@ -7978,14 +7978,14 @@ GSM9078981,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Spe GSM9078982,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small intestinal neuroendocrine tumor,tumour tissue,MONDO:0019496,neuroendocrine neoplasm,disease,luna,Small intestinal neuroendocrine tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1099,17943,counts,pixel,4.167308539584607,platform_constant,True,H&E,4.167308539584607,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41779010,10.1158/1078-0432.ccr-25-2854,GSM9078982,,,train,hesrt,samples/GSE301265/GSM9078982,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.79, ""life_stage"": 1.0}",, GSM9078983,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small intestinal neuroendocrine tumor,tumour tissue,MONDO:0019496,neuroendocrine neoplasm,disease,luna,Small intestinal neuroendocrine tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1015,17943,counts,pixel,4.234051662384297,platform_constant,True,H&E,4.234051662384297,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41779010,10.1158/1078-0432.ccr-25-2854,GSM9078983,,,train,hesrt,samples/GSE301265/GSM9078983,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.76, ""life_stage"": 1.0}",, GSM9078984,GSE301265,GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,Small intestinal neuroendocrine tumor,tumour tissue,MONDO:0019496,neuroendocrine neoplasm,disease,luna,Small intestinal neuroendocrine tumor,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,823,17943,counts,pixel,4.233702579004229,platform_constant,True,H&E,4.233702579004229,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41779010,10.1158/1078-0432.ccr-25-2854,GSM9078984,,,train,hesrt,samples/GSE301265/GSM9078984,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.86, ""life_stage"": 1.0}",, -GSM9079610,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Skin,primary tissue,,,normal,luna,Healthy,,adult,age rule: bare number read as years,adult,47,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,9960,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499967213114754,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079610,,,train,sda-all,samples/GSE301280/GSM9079610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9079610,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Skin,primary tissue,,,normal,luna,Healthy,,adult,age rule: bare number read as years,adult,47,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,9960,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996721311475406,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079610,,,train,sda-all,samples/GSE301280/GSM9079610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079611,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,24,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6800,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000353107344632,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079611,,,train,sda-all,samples/GSE301280/GSM9079611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.52, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9079612,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,32,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5914,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499993881546745,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079612,,,train,sda-all,samples/GSE301280/GSM9079612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9079613,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Healthy,,adult,age rule: bare number read as years,adult,27,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10079,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999773048214646,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079613,,,train,sda-all,samples/GSE301280/GSM9079613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9079612,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,32,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5914,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999388154674507,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079612,,,train,sda-all,samples/GSE301280/GSM9079612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9079613,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Healthy,,adult,age rule: bare number read as years,adult,27,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10079,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997730482146463,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079613,,,train,sda-all,samples/GSE301280/GSM9079613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079614,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Healthy,,adult,age rule: bare number read as years,adult,27,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10662,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000309363398872,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079614,,,train,sda-all,samples/GSE301280/GSM9079614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079615,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Healthy,,adult,age rule: bare number read as years,adult,48,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11535,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999725010312113,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079615,,,train,sda-all,samples/GSE301280/GSM9079615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079616,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,21,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11195,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000389535837297,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9079616,,,train,sda-all,samples/GSE301280/GSM9079616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9079617,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,22048,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999760306807286,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9079617,,,train,sda-all,samples/GSE301280/GSM9079617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, +GSM9079617,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,22048,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997603068072866,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9079617,,,train,sda-all,samples/GSE301280/GSM9079617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, GSM9079618,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19931,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000272851296044,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9079618,,,train,sda-all,samples/GSE301280/GSM9079618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.58, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079619,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,22670,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000061194516972,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9079619,,,train,sda-all,samples/GSE301280/GSM9079619,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.59, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079620,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Pustule,,adult,age rule: bare number read as years,adult,18,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,42558,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000143466141991,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079620,,,train,sda-all,samples/GSE301280/GSM9079620,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.45, ""life_stage"": 0.9500000000000001}",uberon,low_confidence_annotation @@ -7993,7 +7993,7 @@ GSM9079621,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lip GSM9079622,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,18,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17841,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000353107344632,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079622,,,train,sda-all,samples/GSE301280/GSM9079622,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079623,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Pustule,,adult,age rule: bare number read as years,adult,19,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20595,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000102171882297,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079623,,,train,sda-all,samples/GSE301280/GSM9079623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.68, ""life_stage"": 0.99}",, GSM9079624,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,19,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11718,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000285527818567,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079624,,,train,sda-all,samples/GSE301280/GSM9079624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.42, ""life_stage"": 0.99}",uberon,low_confidence_annotation -GSM9079625,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11937,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999614448051948,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079625,,,train,sda-all,samples/GSE301280/GSM9079625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.59, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9079625,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11937,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996144480519483,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079625,,,train,sda-all,samples/GSE301280/GSM9079625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.59, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079626,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10314,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999565972222222,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079626,,,train,sda-all,samples/GSE301280/GSM9079626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.58, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9079627,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0011438,acne,disease,luna,Comedo,,adult,age rule: bare number read as years,adult,21,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11011,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000226523887973,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079627,,,train,sda-all,samples/GSE301280/GSM9079627,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, GSM9079628,GSE301280,GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,,,normal,luna,Non-lesional,,adult,age rule: bare number read as years,adult,21,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7106,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025370407957,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9079628,,,train,sda-all,samples/GSE301280/GSM9079628,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -8029,7 +8029,7 @@ GSM9096728,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resis GSM9096729,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,oral cavity,luna,UBERON:0001723,tongue,tongue,tumour tissue,MONDO:0021351,neoplasm of neck,disease,luna,,Saline,not stated,luna,not stated,,female,Female,GSE302128:738,738,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,142943,9880,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000060907274765,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41053162,,GSM9096729,,,test,sda-all,samples/GSE302128/GSM9096729,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.67, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",,feature_species_differs GSM9096730,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,oral cavity,luna,UBERON:0001723,tongue,tongue,tumour tissue,MONDO:0021351,neoplasm of neck,disease,luna,,Gedatolisib,not stated,luna,not stated,,female,Female,GSE302128:732,732,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54469,9880,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999873806901616,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41053162,,GSM9096730,,,test,sda-all,samples/GSE302128/GSM9096730,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.81, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",,feature_species_differs GSM9096731,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,oral cavity,luna,UBERON:0001723,tongue,tongue,tumour tissue,MONDO:0021351,neoplasm of neck,disease,luna,,Gedatolisib,not stated,luna,not stated,,female,Female,GSE302128:734,734,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52889,9880,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999873806901616,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41053162,,GSM9096731,,,test,sda-all,samples/GSE302128/GSM9096731,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.63, ""disease_status"": 0.99, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",,feature_species_differs -GSM9096732,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,oral cavity,luna,UBERON:0001723,tongue,tongue,tumour tissue,MONDO:0021351,neoplasm of neck,disease,luna,,Gedatolisib,not stated,luna,not stated,,female,Female,GSE302128:735,735,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50212,9880,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999832387828777,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41053162,,GSM9096732,,,test,sda-all,samples/GSE302128/GSM9096732,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 0.61, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",,feature_species_differs +GSM9096732,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,oral cavity,luna,UBERON:0001723,tongue,tongue,tumour tissue,MONDO:0021351,neoplasm of neck,disease,luna,,Gedatolisib,not stated,luna,not stated,,female,Female,GSE302128:735,735,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50212,9880,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998323878287776,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41053162,,GSM9096732,,,test,sda-all,samples/GSE302128/GSM9096732,sda-tissue-disease-2.3,"{""organ"": 0.88, ""sample_kind"": 0.61, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",,feature_species_differs GSM9096733,GSE302128,GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,oral cavity,luna,UBERON:0001723,tongue,tongue,tumour tissue,MONDO:0021351,neoplasm of neck,disease,luna,,Gedatolisib,not stated,luna,not stated,,female,Female,GSE302128:737,737,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75178,9880,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000325922876355,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41053162,,GSM9096733,,,test,sda-all,samples/GSE302128/GSM9096733,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.96, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",,feature_species_differs GSM9097318,GSE302160,GSE302160,4R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001384,primary motor cortex,brain:primary motor cortex,primary tissue,MONDO:0010997;MONDO:0006496,"supranuclear palsy, progressive, 1;palsy",disease,luna,PSP (low seeder),low seeder,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4763,18085,counts,pixel,3.037184984800885,platform_constant,True,H&E,3.037184984800885,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41476155,,GSM9097318,,,val,hesrt,samples/GSE302160/GSM9097318,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9097319,GSE302160,GSE302160,4R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001384,primary motor cortex,brain:primary motor cortex,primary tissue,MONDO:0010997;MONDO:0006496,"supranuclear palsy, progressive, 1;palsy",disease,luna,PSP (low seeder),,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3837,18085,counts,um,1.0,verified,True,fluorescence: blue (heuristic),4.545880211325501,VERIFIED,ABSENT,ABSENT,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,41476155,,GSM9097319,,,val,sda-all,samples/GSE302160/GSM9097319,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -8040,30 +8040,30 @@ Mus musculus",,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:000 GSM9098124,GSE302187,GSE302187,Murine model of MRSA-induced kidney injury (spatial transcriptomics),Mus musculus,10090,house mouse,Mus musculus,10090,Staphylococcus aureus,False,False,GEO organism field,"Staphylococcus aureus Mus musculus",,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0006939,pyelonephritis,disease,luna,,MRSA_day2_and_day4,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5338,19812,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,,,GSM9098124,,,train,sda-all,samples/GSE302187/GSM9098124,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.92}",, GSM9100631,GSE302264,GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,scrambled,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,166847,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000055202870549,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9100631,,,train,sda-all,samples/GSE302264/GSM9100631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9100632,GSE302264,GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,perturbation,luna,,siRNA,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,90617,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999588680487001,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9100632,,,train,sda-all,samples/GSE302264/GSM9100632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9100632,GSE302264,GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,perturbation,luna,,siRNA,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,90617,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49995886804870016,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9100632,,,train,sda-all,samples/GSE302264/GSM9100632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9100633,GSE302264,GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,day 19,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11229,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000287923659098,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9100633,,,train,sda-all,samples/GSE302264/GSM9100633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9100634,GSE302264,GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,day 25,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,106751,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000143266475644,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9100634,,,train,sda-all,samples/GSE302264/GSM9100634,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation GSM9226654,GSE302356,GSE302356,Decoding Lymphangioleiomyomatosis (LAM) Niche Environment via Integrative Analysis of Single Cell Multiomics and Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,268206,18085,counts,um,1.0,verified,True,H&E,2.5183210102795384,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9226654,,,test,sda-all,samples/GSE302356/GSM9226654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9226655,GSE302356,GSE302356,Decoding Lymphangioleiomyomatosis (LAM) Niche Environment via Integrative Analysis of Single Cell Multiomics and Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,173579,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999980860511407,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9226655,,,test,sda-all,samples/GSE302356/GSM9226655,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9226655,GSE302356,GSE302356,Decoding Lymphangioleiomyomatosis (LAM) Niche Environment via Integrative Analysis of Single Cell Multiomics and Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,173579,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999808605114077,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9226655,,,test,sda-all,samples/GSE302356/GSM9226655,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9226656,GSE302356,GSE302356,Decoding Lymphangioleiomyomatosis (LAM) Niche Environment via Integrative Analysis of Single Cell Multiomics and Spatial Transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0011705,lymphangioleiomyomatosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2311,18085,counts,um,1.0,verified,True,H&E,9.636023739276627,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9226656,,,test,sda-all,samples/GSE302356/GSM9226656,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9104197,GSE302449,GSE302449,Rod-shaped microglia interact with neuronal dendrites to regulate cortical excitability in TDP-43 related neurodegeneration,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: age with unit,adult,11 weeks old,female,Female,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3962,19465,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.243176547838095,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40975067,,GSM9104197,,,test,sda-all,samples/GSE302449/GSM9104197,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9104198,GSE302449,GSE302449,Rod-shaped microglia interact with neuronal dendrites to regulate cortical excitability in TDP-43 related neurodegeneration,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Control,adult,age rule: age with unit,adult,11 weeks old,male,Male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3343,19465,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.240801371385965,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40975067,,GSM9104198,,,test,sda-all,samples/GSE302449/GSM9104198,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9104199,GSE302449,GSE302449,Rod-shaped microglia interact with neuronal dendrites to regulate cortical excitability in TDP-43 related neurodegeneration,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,rNLS8,adult,age rule: age with unit,adult,11 weeks old,female,Female,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3033,19465,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.245788498644368,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40975067,,GSM9104199,,,test,sda-all,samples/GSE302449/GSM9104199,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9104200,GSE302449,GSE302449,Rod-shaped microglia interact with neuronal dendrites to regulate cortical excitability in TDP-43 related neurodegeneration,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,,rNLS8,adult,age rule: age with unit,adult,11 weeks old,male,Male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2656,19465,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.242327988565199,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,40975067,,GSM9104200,,,test,sda-all,samples/GSE302449/GSM9104200,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9104597,GSE302470,GSE302470,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium embryo],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,uberon_chain,UBERON:0002097,skin of body,,whole embryo/organism,,,normal,luna,,Krt14Cre -; Lsd1 fl/fl,embryonic,luna,embryonic,embryo,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-3.3.0.1,cell,286053,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999967321685329,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104597,,,train,sda-all,samples/GSE302470/GSM9104597,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 0.96, ""disease_status"": 0.44, ""uberon"": 0.31, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation +GSM9104597,GSE302470,GSE302470,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium embryo],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,uberon_chain,UBERON:0002097,skin of body,,whole embryo/organism,,,normal,luna,,Krt14Cre -; Lsd1 fl/fl,embryonic,luna,embryonic,embryo,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-3.3.0.1,cell,286053,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999673216853296,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104597,,,train,sda-all,samples/GSE302470/GSM9104597,sda-tissue-disease-2.3,"{""organ"": 0.65, ""sample_kind"": 0.96, ""disease_status"": 0.44, ""uberon"": 0.31, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9104598,GSE302470,GSE302470,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium embryo],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,,whole embryo/organism,,,perturbation,luna,,Krt14Cre +; Lsd1 fl/fl,embryonic,luna,embryonic,embryo,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-3.3.0.1,cell,386062,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961880282304,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104598,,,train,sda-all,samples/GSE302470/GSM9104598,sda-tissue-disease-2.3,"{""organ"": 0.52, ""sample_kind"": 0.93, ""disease_status"": 0.92, ""uberon"": 0.37, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation -GSM9104735,GSE302473,GSE302473,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium tumor],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0002529,skin squamous cell carcinoma,disease,luna,Squamous cell carcinoma,DMSO,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,277947,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944839759501,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104735,,,train,sda-all,samples/GSE302473/GSM9104735,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9104735,GSE302473,GSE302473,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium tumor],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0002529,skin squamous cell carcinoma,disease,luna,Squamous cell carcinoma,DMSO,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,277947,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999448397595014,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104735,,,train,sda-all,samples/GSE302473/GSM9104735,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9104736,GSE302473,GSE302473,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium tumor],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0002529,skin squamous cell carcinoma,disease,luna,Squamous cell carcinoma,LSD1i,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,149237,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999972427484283,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104736,,,train,sda-all,samples/GSE302473/GSM9104736,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.45, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9104737,GSE302474,GSE302474,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium CreERT],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,Whole dorsal skin,primary tissue,,,perturbation,luna,,Corn Oil,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,37990,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500001379995584,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104737,,,train,sda-all,samples/GSE302474/GSM9104737,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9104738,GSE302474,GSE302474,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium CreERT],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Whole dorsal skin,primary tissue,MONDO:0005093,skin disorder,disease,mondo_predicate (Luna: perturbation),,Tamoxifen,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,95388,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999986222099751,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104738,,,train,sda-all,samples/GSE302474/GSM9104738,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9104738,GSE302474,GSE302474,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium CreERT],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Whole dorsal skin,primary tissue,MONDO:0005093,skin disorder,disease,mondo_predicate (Luna: perturbation),,Tamoxifen,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-1.7.1.0,cell,95388,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999862220997515,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41817619,,GSM9104738,,,train,sda-all,samples/GSE302474/GSM9104738,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9105216,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:377,377,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12085,534,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000117861983617,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105216,,,train,sda-all,samples/GSE302502/GSM9105216,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105217,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:210,210,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,15316,508,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000034522439586,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105217,,,train,sda-all,samples/GSE302502/GSM9105217,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105218,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:569,569,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17561,535,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000038076588338,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105218,,,train,sda-all,samples/GSE302502/GSM9105218,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105219,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:351,351,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1757,472,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103092783506,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105219,,,train,sda-all,samples/GSE302502/GSM9105219,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105220,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:496,496,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4394,499,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845450049456,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105220,,,train,sda-all,samples/GSE302502/GSM9105220,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105221,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:567,567,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10532,503,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999911686782455,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105221,,,train,sda-all,samples/GSE302502/GSM9105221,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9105222,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:157,157,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,3532,489,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999908821241003,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105222,,,train,sda-all,samples/GSE302502/GSM9105222,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9105223,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:548,548,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1196,474,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999993919050398,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105223,,,train,sda-all,samples/GSE302502/GSM9105223,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9105222,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:157,157,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,3532,489,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999088212410037,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105222,,,train,sda-all,samples/GSE302502/GSM9105222,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9105223,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:548,548,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1196,474,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999939190503984,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105223,,,train,sda-all,samples/GSE302502/GSM9105223,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105224,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:484,484,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1291,480,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000032331488283,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105224,,,train,sda-all,samples/GSE302502/GSM9105224,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105225,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:565,565,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,419,471,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999974193548387,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105225,,,train,sda-all,samples/GSE302502/GSM9105225,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9105226,GSE302502,GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0021042,glioma,disease,luna,Glioma,,not stated,luna,not stated,,unknown,,GSE302502:511,511,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4736,504,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000054996425233,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41125076,,GSM9105226,,,train,sda-all,samples/GSE302502/GSM9105226,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -8076,18 +8076,18 @@ GSM9107840,GSE302642,GSE302642,IDH-mutant gliomas arise from glial progenitor ce GSM9107841,GSE302642,GSE302642,IDH-mutant gliomas arise from glial progenitor cells harboring the initial driver mutation (Related accession no. GSE275791) - Spatial transcriptomics dataset,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Patient-derived peritumoral tissue,primary tissue,,,normal,luna,"Astrocytoma, IDH-mutant, 1p/19q-non-codel",,adult,age rule: age in years,adult,42 years,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23123,541,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41505555,,GSM9107841,,,train,sda-all,samples/GSE302642/GSM9107841,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,normal_but_disease_text;low_confidence_annotation GSM9107842,GSE302642,GSE302642,IDH-mutant gliomas arise from glial progenitor cells harboring the initial driver mutation (Related accession no. GSE275791) - Spatial transcriptomics dataset,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Patient-derived peritumoral tissue,primary tissue,,,disease,luna,"Oligodendroglioma, IDH-mutant, 1p/19q-codel",,adult,age rule: age in years,adult,48 years,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4411,541,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41505555,,GSM9107842,,,train,sda-all,samples/GSE302642/GSM9107842,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9107843,GSE302642,GSE302642,IDH-mutant gliomas arise from glial progenitor cells harboring the initial driver mutation (Related accession no. GSE275791) - Spatial transcriptomics dataset,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Patient-derived peritumoral tissue,primary tissue,MONDO:0021636,astrocytic tumor,disease,mondo_predicate,"Astrocytoma, IDH-mutant, 1p/19q-non-codel",,adult,age rule: age in years,adult,61 years,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,9615,541,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41505555,,GSM9107843,,,train,sda-all,samples/GSE302642/GSM9107843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9108683,GSE302677,GSE302677,Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001225,cortex of kidney,kidney cortex_control,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1413,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.418061425304988,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42602048,,GSM9108683,,,train,sda-all,samples/GSE302677/GSM9108683,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9108683,GSE302677,GSE302677,Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001225,cortex of kidney,kidney cortex_control,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1413,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.4180614253049875,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42602048,,GSM9108683,,,train,sda-all,samples/GSE302677/GSM9108683,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9108684,GSE302677,GSE302677,Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001225,cortex of kidney,kidney cortex_mild AAV,primary tissue,MONDO:0015492,anti-neutrophil cytoplasmic antibody-associated vasculitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,892,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.041496270119149,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42602048,,GSM9108684,,,train,sda-all,samples/GSE302677/GSM9108684,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9108685,GSE302677,GSE302677,Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001225,cortex of kidney,kidney cortex_severe AAV,primary tissue,MONDO:0015492,anti-neutrophil cytoplasmic antibody-associated vasculitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1277,36601,counts,um,1.0,verified,True,H&E-like (heuristic),3.93296089418714,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42602048,,GSM9108685,,,train,sda-all,samples/GSE302677/GSM9108685,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9111711,GSE302815,GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2082,32285,counts,pixel,4.300638244931022,platform_constant,True,H&E,4.300638244931022,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41706888,,GSM9111711,,,train,hesrt,samples/GSE302815/GSM9111711,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation GSM9111712,GSE302815,GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2895,32285,counts,pixel,4.299874657332631,platform_constant,True,H&E,4.299874657332631,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41706888,,GSM9111712,,,train,hesrt,samples/GSE302815/GSM9111712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9111713,GSE302815,GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2804,32285,counts,pixel,4.29911158296532,platform_constant,True,H&E,4.29911158296532,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41706888,,GSM9111713,,,train,hesrt,samples/GSE302815/GSM9111713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.59, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation +GSM9111713,GSE302815,GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2804,32285,counts,pixel,4.2991115829653195,platform_constant,True,H&E,4.2991115829653195,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41706888,,GSM9111713,,,train,hesrt,samples/GSE302815/GSM9111713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.59, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation GSM9111714,GSE302815,GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3073,32285,counts,pixel,4.298729784212042,platform_constant,True,H&E,4.298729784212042,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41706888,,GSM9111714,,,train,hesrt,samples/GSE302815/GSM9111714,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.76, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation GSM9116169,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,950,36601,counts,um,1.0,verified,True,H&E,4.524229088305471,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116169,,,train,sda-all,samples/GSE303036/GSM9116169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9116170,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1036,36601,counts,um,1.0,verified,True,H&E,4.50663821541671,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116170,,,train,sda-all,samples/GSE303036/GSM9116170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9116171,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1575,36601,counts,um,1.0,verified,True,H&E,4.569285892976008,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116171,,,train,sda-all,samples/GSE303036/GSM9116171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9116172,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1065,36601,counts,um,1.0,verified,True,H&E,4.570839681022168,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116172,,,train,sda-all,samples/GSE303036/GSM9116172,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9116173,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1226,36601,counts,um,1.0,verified,True,H&E,4.564502419201816,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116173,,,train,sda-all,samples/GSE303036/GSM9116173,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9116173,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1226,36601,counts,um,1.0,verified,True,H&E,4.5645024192018155,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116173,,,train,sda-all,samples/GSE303036/GSM9116173,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9116174,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1291,36601,counts,um,1.0,verified,True,H&E,4.571432165775176,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116174,,,train,sda-all,samples/GSE303036/GSM9116174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9116175,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,MONDO:0015486,keratoconus,disease,luna,Keratoconus,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1646,36601,counts,um,1.0,verified,True,H&E,4.56942597974196,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116175,,,train,sda-all,samples/GSE303036/GSM9116175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9116176,GSE303036,GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,eye,luna,UBERON:0000964,cornea,Cornea,primary tissue,,,normal,luna,non-affected,,not stated,luna,not stated,,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1505,36601,counts,um,1.0,verified,True,H&E,4.5710234903688285,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41931003,,GSM9116176,,,train,sda-all,samples/GSE303036/GSM9116176,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -8451,17 +8451,17 @@ GSM9117239,GSE303070,GSE303070,A spatial atlas of colorectal cancer reveals the GSM9119669,GSE303162+GSE303166,GSE303162,A novel CAF population coordinates hyper-suppressive regulatory T cell recruitment and localization in lung cancer [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0000101,lobe of lung,Lung,metastasis,MONDO:0008903,lung cancer,disease,luna,,C57B6J,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1858,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.375420575746022,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42581185,,GSM9119669,,,train,sda-all,samples/GSE303162/GSM9119669,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.74, ""disease_status"": 1.0, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9119670,GSE303162+GSE303166,GSE303162,A novel CAF population coordinates hyper-suppressive regulatory T cell recruitment and localization in lung cancer [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,metastasis,MONDO:0008903,lung cancer,disease,luna,,C57B6J,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2697,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.381088199956986,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42581185,,GSM9119670,,,train,sda-all,samples/GSE303162/GSM9119670,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 1.0, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9128541,GSE303530,GSE303530,Inhibition of HIF1 signaling as a therapeutic option for metastatic castration-resistant prostate cancer.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,prostate,luna,UBERON:0002367,prostate gland,prostate,tumour tissue,MONDO:0008315,prostate cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2936,19465,counts,um,1.0,verified,True,H&E,5.827803279007619,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41896221,,GSM9128541,,,train,sda-all,samples/GSE303530/GSM9128541,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9130427,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,582846,18085,counts,um,1.0,verified,True,H&E,3.859980636094957,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130427,,,test,sda-all,samples/GSE303546/GSM9130427,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9130427,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,582846,18085,counts,um,1.0,verified,True,H&E,3.8599806360949565,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130427,,,test,sda-all,samples/GSE303546/GSM9130427,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9130428,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,701837,18085,counts,um,1.0,verified,True,H&E,3.808561369496922,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130428,,,test,sda-all,samples/GSE303546/GSM9130428,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9130429,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,625873,18085,counts,um,1.0,verified,True,H&E,4.110354230625786,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130429,,,test,sda-all,samples/GSE303546/GSM9130429,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9130430,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,631346,18085,counts,um,1.0,verified,True,H&E,2.5879650587565317,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130430,,,test,sda-all,samples/GSE303546/GSM9130430,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9130430,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,631346,18085,counts,um,1.0,verified,True,H&E,2.5879650587565313,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130430,,,test,sda-all,samples/GSE303546/GSM9130430,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9130431,GSE303546,GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph Node,tumour tissue,MONDO:0004928;MONDO:0018906,lymph node disorder;follicular lymphoma,disease,luna,admixed FL and tFL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,681787,18085,counts,um,1.0,verified,True,H&E,4.520696008095351,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9130431,,,test,sda-all,samples/GSE303546/GSM9130431,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9134407,GSE303705,GSE303705,A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum of small intestine,primary tissue,,,perturbation,luna,,"Day 0, Day 0, Day 1, Day 3, Day 5 post-IR",not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,415262,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9134407,,,val,hesrt,samples/GSE303705/GSM9134407,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9134408,GSE303705,GSE303705,A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum of small intestine,primary tissue,,,perturbation,luna,,"Day 0, Day 1, Day 2, Day 3, Day 4, Day 5 post-IR",not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,397346,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9134408,,,val,hesrt,samples/GSE303705/GSM9134408,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9134409,GSE303705,GSE303705,A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum of small intestine,primary tissue,,,perturbation,luna,,"Day 0, Day 1, Day 2, Day 3, Day 4, Day 5 post-IR (rep3)",not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,398382,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9134409,,,val,hesrt,samples/GSE303705/GSM9134409,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9134410,GSE303705,GSE303705,A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum of small intestine,primary tissue,,,perturbation,luna,,"Day 0, Day 1, Day 2, Day 3, Day 4, Day 5 post-IR (rep4)",not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,433274,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9134410,,,val,hesrt,samples/GSE303705/GSM9134410,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9135513,GSE303764,GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,Cavia porcellus,10141,domestic guinea pig,Cavia porcellus,10141,,False,False,GEO organism field,Cavia porcellus,,placenta,luna,UBERON:0001987,placenta,Maternal-fetal interface,primary tissue,,,disease,luna,,GPCMV-infected,fetal,luna,fetal,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3201,31681,counts,um,1.0,verified,True,H&E-like (heuristic),4.913027310586708,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9135513,,,test,sda-all,samples/GSE303764/GSM9135513,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.46}",life_stage,low_confidence_annotation -GSM9135514,GSE303764,GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,Cavia porcellus,10141,domestic guinea pig,Cavia porcellus,10141,,False,False,GEO organism field,Cavia porcellus,,placenta,luna,UBERON:0001987,placenta,Maternal-fetal interface,primary tissue,,,disease,luna,,GPCMV-infected,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1942,31681,counts,um,1.0,verified,True,H&E-like (heuristic),4.31807555337774,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9135514,,,test,sda-all,samples/GSE303764/GSM9135514,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.53}",life_stage,low_confidence_annotation +GSM9135514,GSE303764,GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,Cavia porcellus,10141,domestic guinea pig,Cavia porcellus,10141,,False,False,GEO organism field,Cavia porcellus,,placenta,luna,UBERON:0001987,placenta,Maternal-fetal interface,primary tissue,,,disease,luna,,GPCMV-infected,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1942,31681,counts,um,1.0,verified,True,H&E-like (heuristic),4.3180755533777395,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9135514,,,test,sda-all,samples/GSE303764/GSM9135514,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.53}",life_stage,low_confidence_annotation GSM9135515,GSE303764,GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,Cavia porcellus,10141,domestic guinea pig,Cavia porcellus,10141,,False,False,GEO organism field,Cavia porcellus,,placenta,luna,UBERON:0001987,placenta,Maternal-fetal interface,primary tissue,,,normal,luna,,Mock-infected,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1967,31681,counts,um,1.0,verified,True,H&E-like (heuristic),4.2057383226824125,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9135515,,,test,sda-all,samples/GSE303764/GSM9135515,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",disease_status,low_confidence_annotation GSM9135516,GSE303764,GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,Cavia porcellus,10141,domestic guinea pig,Cavia porcellus,10141,,False,False,GEO organism field,Cavia porcellus,,placenta,luna,UBERON:0001987,placenta,Maternal-fetal interface,primary tissue,,,normal,luna,,Mock-infected,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2583,31681,counts,um,1.0,verified,True,H&E-like (heuristic),4.332160721111343,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9135516,,,test,sda-all,samples/GSE303764/GSM9135516,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 0.5}",life_stage,low_confidence_annotation GSM9135517,GSE303764,GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,Cavia porcellus,10141,domestic guinea pig,Cavia porcellus,10141,,False,False,GEO organism field,Cavia porcellus,,placenta,luna,UBERON:0001987,placenta,Maternal-fetal interface,primary tissue,,,disease,luna,,GPCMV-infected,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3317,31681,counts,um,1.0,verified,True,H&E-like (heuristic),4.668131156785954,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9135517,,,test,sda-all,samples/GSE303764/GSM9135517,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.78}",, @@ -8481,8 +8481,8 @@ GSM9138356,GSE303933,GSE303933,Obstetric complications in pregnant people with F GSM9138357,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,disease,luna,,Growth restricted (FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4791,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.930560781298076,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138357,,,train,sda-all,samples/GSE303933/GSM9138357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.98, ""life_stage"": 0.43}",life_stage,low_confidence_annotation GSM9138358,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,normal,luna,,Well-grown (non FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4961,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.977224193538518,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138358,,,train,sda-all,samples/GSE303933/GSM9138358,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 0.52}",life_stage,low_confidence_annotation GSM9138359,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,disease,luna,,Growth restricted (FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4982,18085,counts,um,1.0,verified,True,H&E-like (heuristic),7.031750386098033,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138359,,,train,sda-all,samples/GSE303933/GSM9138359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.98, ""life_stage"": 0.67}",, -GSM9138360,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,normal,luna,,Well-grown (non FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),7.037286067401356,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138360,,,train,sda-all,samples/GSE303933/GSM9138360,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 0.71}",, -GSM9138361,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,disease,luna,,Growth restricted (FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4053,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.952728632742351,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138361,,,train,sda-all,samples/GSE303933/GSM9138361,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 0.56}",life_stage,low_confidence_annotation +GSM9138360,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,normal,luna,,Well-grown (non FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),7.0372860674013555,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138360,,,train,sda-all,samples/GSE303933/GSM9138360,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 0.71}",, +GSM9138361,GSE303933,GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,placenta,primary tissue,,,disease,luna,,Growth restricted (FGR),not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4053,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.9527286327423505,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42597080,,GSM9138361,,,train,sda-all,samples/GSE303933/GSM9138361,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 0.56}",life_stage,low_confidence_annotation GSM9143736,GSE304111,GSE304111,Spatial transcriptomics analysis of mouse liver tissue during Alcohol-associated liver disease development and resolution,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154,liver disorder,disease,luna,,,not stated,luna,not stated,,male,male,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,44347,1010,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9143736,,,train,sda-all,samples/GSE304111/GSM9143736,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.13, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9144067,GSE304124,GSE304124,Mapping Cellular Senescence in Human Dental Follicle and Odontogenic Keratocyst,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Fresh frozen odontogenic keratocyst tissue,tumour tissue,MONDO:0018648,Keratocystic odontogenic tumor,disease,luna,,no treatment,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,724,36945,counts,um,1.0,verified,True,H&E-like (heuristic),4.103808316358437,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42123694,,GSM9144067,,,train,sda-all,samples/GSE304124/GSM9144067,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 0.93, ""disease_status"": 1.0, ""uberon"": 0.76, ""life_stage"": 1.0}",, GSM9144566,GSE304160,GSE304160,Targeting CyclinD1-CDK6 to Mitigate Senescence-Driven Inflammation and Age Associated Functional Decline,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,,aged,luna,aged,,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,73622,1194,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,40766702;41509421,,GSM9144566,,,train,sda-all,samples/GSE304160/GSM9144566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 0.52}",disease_status;life_stage,low_confidence_annotation @@ -8499,14 +8499,14 @@ GSM9152865,GSE304561,GSE304561,Heterogeneity in B- and epithelial-cell senescenc GSM9152866,GSE304561,GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,aged,age rule: bare number read as years,aged,72,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3465,36601,counts,um,1.0,verified,True,H&E,4.063583455861538,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9152866,,,train,sda-all,samples/GSE304561/GSM9152866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9152867,GSE304561,GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1871,36601,counts,um,1.0,verified,True,H&E,3.94900436372168,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9152867,,,train,sda-all,samples/GSE304561/GSM9152867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9152868,GSE304561,GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3485,36601,counts,um,1.0,verified,True,H&E,4.055388210329012,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9152868,,,train,sda-all,samples/GSE304561/GSM9152868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9152869,GSE304561,GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,62,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2591,36601,counts,um,1.0,verified,True,H&E,3.973856311689143,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9152869,,,train,sda-all,samples/GSE304561/GSM9152869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9152869,GSE304561,GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,62,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2591,36601,counts,um,1.0,verified,True,H&E,3.9738563116891426,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9152869,,,train,sda-all,samples/GSE304561/GSM9152869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9155022,GSE304669,GSE304669,Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney allograft biopsy tissue,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1052,18061,counts,pixel,6.497887774507204,platform_constant,True,H&E,6.497887774507204,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41030449,,GSM9155022,,,val,hesrt,samples/GSE304669/GSM9155022,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.5700000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9155023,GSE304669,GSE304669,Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney allograft biopsy tissue,primary tissue,MONDO:1010185,transplant rejection,disease,luna,,active AMR,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1348,18061,counts,pixel,5.198064834750562,platform_constant,True,H&E,5.198064834750562,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41030449,,GSM9155023,,,val,hesrt,samples/GSE304669/GSM9155023,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9155024,GSE304669,GSE304669,Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney allograft biopsy tissue,primary tissue,MONDO:1010185,transplant rejection,disease,luna,,acute TCMR,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,992,18061,counts,pixel,5.177104462707727,platform_constant,True,H&E,5.177104462707727,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41030449,,GSM9155024,,,val,hesrt,samples/GSE304669/GSM9155024,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.84, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9155025,GSE304669,GSE304669,Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney allograft biopsy tissue,primary tissue,MONDO:1010185,transplant rejection,disease,luna,,chronic active AMR,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1129,18061,counts,pixel,5.991509661738318,platform_constant,True,H&E,5.991509661738318,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41030449,,GSM9155025,,,val,hesrt,samples/GSE304669/GSM9155025,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9156518,GSE304762,GSE304762,Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,esophagus,luna,UBERON:0001043,esophagus,Normal esophagus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4270,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999876094498596,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41337486;42239047,,GSM9156518,,,train,sda-all,samples/GSE304762/GSM9156518,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9156519,GSE304762,GSE304762,Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,ESCC,xenograft,MONDO:0005580,esophageal squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,172251,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000084472142964,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41337486;42239047,,GSM9156519,,,train,sda-all,samples/GSE304762/GSM9156519,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.87, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM9157703,GSE304811,GSE304811,RHOAY42C-driven cell lineage plasticity and immune remodeling of diffuse gastric cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Diffuse gastric cancer,xenograft,MONDO:0957519,diffuse gastric cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,261111,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499999205239064,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9157703,,,train,sda-all,samples/GSE304811/GSM9157703,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.96, ""uberon"": 0.61, ""life_stage"": 1.0}",, +GSM9157703,GSE304811,GSE304811,RHOAY42C-driven cell lineage plasticity and immune remodeling of diffuse gastric cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Diffuse gastric cancer,xenograft,MONDO:0957519,diffuse gastric cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,261111,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999920523906405,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9157703,,,train,sda-all,samples/GSE304811/GSM9157703,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 0.96, ""uberon"": 0.61, ""life_stage"": 1.0}",, GSM9157704,GSE304811,GSE304811,RHOAY42C-driven cell lineage plasticity and immune remodeling of diffuse gastric cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,Diffuse gastric cancer,xenograft,MONDO:0957519,diffuse gastric cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,255744,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999984107812599,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9157704,,,train,sda-all,samples/GSE304811/GSM9157704,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8, ""disease_status"": 0.96, ""uberon"": 0.74, ""life_stage"": 1.0}",, GSM9160367,GSE304962,GSE304962,Multi-omics analyses reveal DjTcf4 critical for proper timing of differentiation in planarian regeneration,Dugesia japonica,6161,,Dugesia japonica,6161,,False,False,GEO organism field,Dugesia japonica,,other,luna,UBERON:0005306,blastema,Head blastema,primary tissue,,,perturbation,luna,,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,180,38792,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9160367,,,train,hesrt,samples/GSE304962/GSM9160367,sda-tissue-disease-2.4,"{""organ"": 0.72, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.9, ""life_stage"": 0.5}",life_stage,low_confidence_annotation GSM9160368,GSE304962,GSE304962,Multi-omics analyses reveal DjTcf4 critical for proper timing of differentiation in planarian regeneration,Dugesia japonica,6161,,Dugesia japonica,6161,,False,False,GEO organism field,Dugesia japonica,,other,luna,UBERON:0005306,blastema,Head blastema,primary tissue,,,perturbation,luna,,WT,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,201,38792,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9160368,,,train,hesrt,samples/GSE304962/GSM9160368,sda-tissue-disease-2.4,"{""organ"": 0.5700000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.9400000000000001, ""life_stage"": 0.48}",organ;life_stage,low_confidence_annotation @@ -8541,19 +8541,19 @@ GSM9193796,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in GSM9193797,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,87249,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000028227324049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193797,,,train,sda-all,samples/GSE306130/GSM9193797,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9193798,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0020804,skin carcinoma;basal cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,190755,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051741470048,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193798,,,train,sda-all,samples/GSE306130/GSM9193798,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9193799,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,64284,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077407369181,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193799,,,train,sda-all,samples/GSE306130/GSM9193799,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9193800,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,73107,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922608605922,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193800,,,train,sda-all,samples/GSE306130/GSM9193800,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM9193800,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,73107,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999226086059223,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193800,,,train,sda-all,samples/GSE306130/GSM9193800,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9193801,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0020804,skin carcinoma;basal cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,116786,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000123946455131,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193801,,,train,sda-all,samples/GSE306130/GSM9193801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9193802,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0020804,skin carcinoma;basal cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,150455,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917159109737,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193802,,,train,sda-all,samples/GSE306130/GSM9193802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9193803,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,92520,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999977034723498,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193803,,,train,sda-all,samples/GSE306130/GSM9193803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9193803,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,92520,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999770347234984,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193803,,,train,sda-all,samples/GSE306130/GSM9193803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9193804,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,248639,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000079557026477,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193804,,,train,sda-all,samples/GSE306130/GSM9193804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9193805,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,187335,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499999061138651,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193805,,,train,sda-all,samples/GSE306130/GSM9193805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM9193805,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096,skin carcinoma;squamous cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,187335,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999906113865106,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193805,,,train,sda-all,samples/GSE306130/GSM9193805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9193806,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096;MONDO:0020804,skin carcinoma;squamous cell carcinoma;basal cell carcinoma,disease,luna,,IC/IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,125749,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989085352543,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193806,,,train,sda-all,samples/GSE306130/GSM9193806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9193807,GSE306130,GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Tumor,tumour tissue,MONDO:0002656;MONDO:0005096;MONDO:0020804,skin carcinoma;squamous cell carcinoma;basal cell carcinoma,disease,luna,,IS,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,XENIUM,,,cell,247159,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000054537521815,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42556334,,GSM9193807,,,train,sda-all,samples/GSE306130/GSM9193807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9194119,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA1,GCA1,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55867,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500010294844342,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194119,,,train,sda-all,samples/GSE306150/GSM9194119,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9194120,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA1,GCA1,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,58078,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499987644151565,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194120,,,train,sda-all,samples/GSE306150/GSM9194120,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, +GSM9194120,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA1,GCA1,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,58078,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998764415156505,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194120,,,train,sda-all,samples/GSE306150/GSM9194120,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9194121,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA2,GCA2,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45520,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991258359194,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194121,,,train,sda-all,samples/GSE306150/GSM9194121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9194122,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA2,GCA2,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,49028,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999884669547904,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194122,,,train,sda-all,samples/GSE306150/GSM9194122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9194123,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA3,GCA3,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38722,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999901630129285,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194123,,,train,sda-all,samples/GSE306150/GSM9194123,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9194122,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA2,GCA2,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,49028,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998846695479043,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194122,,,train,sda-all,samples/GSE306150/GSM9194122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9194123,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA3,GCA3,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38722,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999016301292853,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194123,,,train,sda-all,samples/GSE306150/GSM9194123,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9194124,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0006656,aortitis,disease,luna,Giant Cell Aortitis,,not stated,luna,not stated,,female,Female,GSE306150:GCA3,GCA3,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45053,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000274122807018,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194124,,,train,sda-all,samples/GSE306150/GSM9194124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9194125,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001496,ascending aorta,ascending aorta,primary tissue,MONDO:0018672;MONDO:0006656,IgG4-related aortitis;aortitis,disease,luna,IgG4-related Aortitis,,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59298,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999908670238675,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9194125,,,train,sda-all,samples/GSE306150/GSM9194125,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9485373,GSE306150,GSE306150,Spatial gene expression profiling of aortitis samples.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0000947,aorta,Aorta,primary tissue,MONDO:0042981,aortic valve stenosis,disease,luna,Aortic Stenosis,,not stated,luna,not stated,,female,Female,GSE306150:AS1,AS1,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35491,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41948935,,GSM9485373,,,train,sda-all,samples/GSE306150/GSM9485373,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -8576,7 +8576,7 @@ GSM9202343,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Disco GSM9202344,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,"pediatric medulloblastoma, SHH",tumour tissue,MONDO:0002797,childhood medulloblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2714,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.230161778382331,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42449993,,GSM9202344,,,train,sda-all,samples/GSE306506/GSM9202344,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.97}",, GSM9202345,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,"pediatric medulloblastoma, SHH",tumour tissue,MONDO:0002797,childhood medulloblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3817,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.953643722375171,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42449993,,GSM9202345,,,train,sda-all,samples/GSE306506/GSM9202345,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.49, ""life_stage"": 0.7000000000000001}",uberon,low_confidence_annotation GSM9202346,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,"pediatric medulloblastoma, SHH",tumour tissue,MONDO:0002797,childhood medulloblastoma,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3613,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.93711650704432,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42449993,,GSM9202346,,,train,sda-all,samples/GSE306506/GSM9202346,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.62}",, -GSM9202347,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,"pediatric medulloblastoma, Group 4",tumour tissue,MONDO:0002797,childhood medulloblastoma,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3984,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.950817693058717,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42449993,,GSM9202347,,,train,sda-all,samples/GSE306506/GSM9202347,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.51}",life_stage,low_confidence_annotation +GSM9202347,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,"pediatric medulloblastoma, Group 4",tumour tissue,MONDO:0002797,childhood medulloblastoma,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3984,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.9508176930587173,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42449993,,GSM9202347,,,train,sda-all,samples/GSE306506/GSM9202347,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.51}",life_stage,low_confidence_annotation GSM9202348,GSE306506,GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,"pediatric medulloblastoma, Group 4",tumour tissue,MONDO:0002797,childhood medulloblastoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2385,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.2310882110207455,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42449993,,GSM9202348,,,train,sda-all,samples/GSE306506/GSM9202348,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9204000,GSE306575,GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5484,18095,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41810427,,GSM9204000,,,train,sda-all,samples/GSE306575/GSM9204000,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.21, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9204001,GSE306575,GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5289,18085,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41810427,,GSM9204001,,,train,sda-all,samples/GSE306575/GSM9204001,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.51, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -8587,12 +8587,12 @@ GSM9204005,GSE306575,GSE306575,Spatial and single-nucleus transcriptomic profili GSM9204006,GSE306575,GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8640,37120,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41810427,,GSM9204006,,,train,sda-all,samples/GSE306575/GSM9204006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9204007,GSE306575,GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13348,37120,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41810427,,GSM9204007,,,train,sda-all,samples/GSE306575/GSM9204007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9204008,GSE306575,GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10732,37120,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41810427,,GSM9204008,,,train,sda-all,samples/GSE306575/GSM9204008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9204716,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4242,18085,counts,um,1.0,verified,True,H&E-like (heuristic),14.67039401947168,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204716,,,val,sda-all,samples/GSE306617/GSM9204716,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9204717,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4537,18085,counts,um,1.0,verified,True,H&E-like (heuristic),14.780835720822203,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204717,,,val,sda-all,samples/GSE306617/GSM9204717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9204716,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4242,18085,counts,um,1.0,verified,True,H&E-like (heuristic),14.670394019471681,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204716,,,val,sda-all,samples/GSE306617/GSM9204716,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9204717,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4537,18085,counts,um,1.0,verified,True,H&E-like (heuristic),14.780835720822205,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204717,,,val,sda-all,samples/GSE306617/GSM9204717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9204718,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3565,18085,counts,um,1.0,verified,True,H&E-like (heuristic),17.120759614244278,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204718,,,val,sda-all,samples/GSE306617/GSM9204718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9204719,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3844,18085,counts,um,1.0,verified,True,H&E-like (heuristic),15.880780262708464,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204719,,,val,sda-all,samples/GSE306617/GSM9204719,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9204719,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3844,18085,counts,um,1.0,verified,True,H&E-like (heuristic),15.880780262708463,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204719,,,val,sda-all,samples/GSE306617/GSM9204719,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9204720,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4126,18085,counts,um,1.0,verified,True,H&E-like (heuristic),16.56777555422276,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204720,,,val,sda-all,samples/GSE306617/GSM9204720,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9204721,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3884,18085,counts,um,1.0,verified,True,H&E-like (heuristic),18.84330176170037,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204721,,,val,sda-all,samples/GSE306617/GSM9204721,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9204721,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3884,18085,counts,um,1.0,verified,True,H&E-like (heuristic),18.843301761700374,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204721,,,val,sda-all,samples/GSE306617/GSM9204721,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9204722,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4715,18085,counts,um,1.0,verified,True,H&E-like (heuristic),16.28339388545875,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204722,,,val,sda-all,samples/GSE306617/GSM9204722,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9204723,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),15.531534060944814,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204723,,,val,sda-all,samples/GSE306617/GSM9204723,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9204724,GSE306617,GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreas,tumour tissue,MONDO:0005614,pancreatic adenosquamous carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4710,18085,counts,um,1.0,verified,True,H&E-like (heuristic),13.84612528585095,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9204724,,,val,sda-all,samples/GSE306617/GSM9204724,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -8609,7 +8609,7 @@ GSM9210725,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmun GSM9210726,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32584,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999898593834505,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210726,,,train,sda-all,samples/GSE306852/GSM9210726,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9210727,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,89371,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500008607629803,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210727,,,train,sda-all,samples/GSE306852/GSM9210727,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9210728,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41251,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000164500740253,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210728,,,train,sda-all,samples/GSE306852/GSM9210728,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9210729,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26648,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999832387828777,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210729,,,train,sda-all,samples/GSE306852/GSM9210729,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9210729,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26648,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998323878287776,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210729,,,train,sda-all,samples/GSE306852/GSM9210729,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9210730,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50960,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999742692466035,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210730,,,train,sda-all,samples/GSE306852/GSM9210730,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9210731,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54143,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000072314049586,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210731,,,train,sda-all,samples/GSE306852/GSM9210731,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9210732,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44621,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000090178295372,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210732,,,train,sda-all,samples/GSE306852/GSM9210732,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -8617,14 +8617,14 @@ GSM9210733,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmun GSM9210734,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41112,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000058788947678,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210734,,,train,sda-all,samples/GSE306852/GSM9210734,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9210735,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,15441,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499985632183908,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210735,,,train,sda-all,samples/GSE306852/GSM9210735,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9210736,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34980,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499967461296068,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210736,,,train,sda-all,samples/GSE306852/GSM9210736,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9210737,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44598,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499975,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210737,,,train,sda-all,samples/GSE306852/GSM9210737,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9211260,GSE306881,GSE306881,Peptidoglycan from Bifidobacterium adolescentis enhances IL-10 production in regulatory B cells to alleviate gut inflammation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,Crohn's disease,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,477376,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896846768589,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,CG-17739d1ad2a9,cross_gse_redeposit,GSM8803514,val,sda-all,samples/GSE306881/GSM9211260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9211261,GSE306881,GSE306881,Peptidoglycan from Bifidobacterium adolescentis enhances IL-10 production in regulatory B cells to alleviate gut inflammation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,Crohn's disease,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,381551,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999933862433862,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9211261,,,val,sda-all,samples/GSE306881/GSM9211261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9210737,GSE306852,GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0005240,kidney disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44598,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997500000000006,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42228574,,GSM9210737,,,train,sda-all,samples/GSE306852/GSM9210737,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9211260,GSE306881,GSE306881,Peptidoglycan from Bifidobacterium adolescentis enhances IL-10 production in regulatory B cells to alleviate gut inflammation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,Crohn's disease,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,477376,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998968467685895,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,CG-17739d1ad2a9,cross_gse_redeposit,GSM8803514,val,sda-all,samples/GSE306881/GSM9211260,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9211261,GSE306881,GSE306881,Peptidoglycan from Bifidobacterium adolescentis enhances IL-10 production in regulatory B cells to alleviate gut inflammation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002108,small intestine,small intestine,primary tissue,MONDO:0005011,Crohn disease,disease,luna,Crohn's disease,,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,381551,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999338624338624,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9211261,,,val,sda-all,samples/GSE306881/GSM9211261,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9214538,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,95887,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103476821192,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214538,,,train,sda-all,samples/GSE307031/GSM9214538,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9214539,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,70558,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890452310239,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214539,,,train,sda-all,samples/GSE307031/GSM9214539,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.65}",, GSM9214540,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,normal,luna,,,aged,luna,aged,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,54628,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103455410718,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214540,,,train,sda-all,samples/GSE307031/GSM9214540,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM9214541,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,normal,luna,,,aged,luna,aged,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,64265,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.500008173852391,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214541,,,train,sda-all,samples/GSE307031/GSM9214541,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.97}",, -GSM9214542,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,65560,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.499998854996794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214542,,,train,sda-all,samples/GSE307031/GSM9214542,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9214542,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,65560,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999885499679403,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214542,,,train,sda-all,samples/GSE307031/GSM9214542,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9214543,GSE307031,GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000966,retina,Retina,primary tissue,,,perturbation,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Mouse 5K Pan Tissue & Pathways Panel,xenium-3.1.0.4,cell,92464,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000043145105619,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9214543,,,train,sda-all,samples/GSE307031/GSM9214543,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9216987,GSE307128+GSE307351,GSE307128,Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions [II],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,disease,luna,,Bleomycin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,192895,19059,counts,um,1.0,verified,True,H&E,4.691560238912609,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42418498,,GSM9216987,,,train,sda-all,samples/GSE307128/GSM9216987,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9216988,GSE307128+GSE307351,GSE307128,Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions [II],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,disease,luna,,Bleomycin,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,178431,19059,counts,um,1.0,verified,True,H&E,4.69163305777653,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42418498,,GSM9216988,,,train,sda-all,samples/GSE307128/GSM9216988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -8638,15 +8638,15 @@ GSM9219226,GSE307215,GSE307215,Spatiotemporal Single-Cell Profiling Reveals T Ce GSM9219227,GSE307215,GSE307215,Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001007,digestive system,gut,primary tissue,MONDO:0013730,graft versus host disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,221682,18085,counts,um,1.0,verified,False,,,UNRESOLVED,ABSENT,ABSENT,,zero_count_observations,VERIFIED,FAIL,,,42754741,,GSM9219227,,,val,sda-all,samples/GSE307215/GSM9219227,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.96, ""life_stage"": 1.0}",organ;disease_status,low_confidence_annotation GSM9219228,GSE307215,GSE307215,Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0001007,digestive system,gut,primary tissue,MONDO:0013730,graft versus host disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,168857,18085,counts,um,1.0,verified,True,H&E-like (heuristic),1.041369508157627,VERIFIED,ABSENT,ABSENT,image_partial_coverage,zero_count_observations,VERIFIED,PASS,,,42754741,,GSM9219228,,,val,sda-all,samples/GSE307215/GSM9219228,sda-tissue-disease-2.3,"{""organ"": 0.4, ""sample_kind"": 0.98, ""disease_status"": 0.6900000000000001, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9219229,GSE307215,GSE307215,Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0001007,digestive system,gut,primary tissue,MONDO:0013730,graft versus host disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,272298,18085,counts,um,1.0,verified,True,H&E-like (heuristic),1.59109527903929,VERIFIED,ABSENT,ABSENT,,zero_count_observations,VERIFIED,PASS,,,42754741,,GSM9219229,,,val,sda-all,samples/GSE307215/GSM9219229,sda-tissue-disease-2.3,"{""organ"": 0.5, ""sample_kind"": 0.98, ""disease_status"": 0.53, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",organ;disease_status,low_confidence_annotation -GSM9223468,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45898,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999918706397067,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223468,,,train,sda-all,samples/GSE307404/GSM9223468,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9223468,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45898,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999187063970674,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223468,,,train,sda-all,samples/GSE307404/GSM9223468,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223469,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,61222,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999976980801989,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223469,,,train,sda-all,samples/GSE307404/GSM9223469,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223470,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41266,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999868440835964,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223470,,,train,sda-all,samples/GSE307404/GSM9223470,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223471,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57508,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000132908027645,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223471,,,train,sda-all,samples/GSE307404/GSM9223471,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223472,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,66560,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020683949256,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223472,,,train,sda-all,samples/GSE307404/GSM9223472,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223473,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,56715,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000013787018143,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223473,,,train,sda-all,samples/GSE307404/GSM9223473,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223474,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46917,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000048294513743,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223474,,,train,sda-all,samples/GSE307404/GSM9223474,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9223475,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,71389,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999972744319915,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223475,,,train,sda-all,samples/GSE307404/GSM9223475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9223476,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59787,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965480738251,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223476,,,train,sda-all,samples/GSE307404/GSM9223476,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9223475,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,71389,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999727443199155,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223475,,,train,sda-all,samples/GSE307404/GSM9223475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9223476,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59787,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999654807382515,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223476,,,train,sda-all,samples/GSE307404/GSM9223476,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223477,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48542,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000013787018143,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223477,,,train,sda-all,samples/GSE307404/GSM9223477,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.12, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223478,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,62396,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000089610676078,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223478,,,train,sda-all,samples/GSE307404/GSM9223478,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.19, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9223479,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45675,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999870720860482,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223479,,,train,sda-all,samples/GSE307404/GSM9223479,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -8656,16 +8656,16 @@ GSM9223482,GSE307404,GSE307404,Schizophrenia-linked gene expression changes acro GSM9223483,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59962,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999934646218195,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223483,,,train,sda-all,samples/GSE307404/GSM9223483,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9223484,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44655,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000047697786822,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223484,,,train,sda-all,samples/GSE307404/GSM9223484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9223485,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68976,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999945244816509,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223485,,,train,sda-all,samples/GSE307404/GSM9223485,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9223486,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46286,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999975646583215,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223486,,,train,sda-all,samples/GSE307404/GSM9223486,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9223486,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46286,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999756465832157,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223486,,,train,sda-all,samples/GSE307404/GSM9223486,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223487,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45793,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000116423470972,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223487,,,train,sda-all,samples/GSE307404/GSM9223487,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223488,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59438,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500013109958048,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223488,,,train,sda-all,samples/GSE307404/GSM9223488,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9223489,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67472,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999975666731555,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223489,,,train,sda-all,samples/GSE307404/GSM9223489,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9223489,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67472,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999756667315554,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223489,,,train,sda-all,samples/GSE307404/GSM9223489,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9223490,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47384,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000055151114052,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223490,,,train,sda-all,samples/GSE307404/GSM9223490,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9223491,GSE307404,GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0009834,dorsolateral prefrontal cortex,dorsolateral prefrontal cortex,primary tissue,MONDO:0005090,schizophrenia,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,53201,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000064656287176,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9223491,,,train,sda-all,samples/GSE307404/GSM9223491,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9225625,GSE307496,GSE307496,Dissecting the development of bovine testicular tissue using spatial transcriptomics,Bos taurus,9913,domestic cattle,Bos taurus,9913,,False,False,GEO organism field,Bos taurus,,testis,luna,UBERON:0000473,testis,testis,primary tissue,,,normal,luna,,calves,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,538856,20845,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,41639718,,GSM9225625,,,train,sda-all,samples/GSE307496/GSM9225625,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9225626,GSE307496,GSE307496,Dissecting the development of bovine testicular tissue using spatial transcriptomics,Bos taurus,9913,domestic cattle,Bos taurus,9913,,False,False,GEO organism field,Bos taurus,,testis,luna,UBERON:0000473,testis,testis,primary tissue,,,normal,luna,,adult bovine,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,394125,20491,counts,um,1.0,verified,False,,,WITHHELD,,,hesrt_review_fail,,VERIFIED,,,,41639718,,GSM9225626,,,train,sda-all,samples/GSE307496/GSM9225626,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.63}",, GSM9225693,GSE307504,GSE307504,Single-cell and spatial transcriptomic atlas of pathological scars uncovers neuro-fibroblast crosstalk mechanisms across scar types,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,hypertrophic scar tissue,primary tissue,,,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1981,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.370789328404686,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9225693,,,train,sda-all,samples/GSE307504/GSM9225693,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, -GSM9225694,GSE307504,GSE307504,Single-cell and spatial transcriptomic atlas of pathological scars uncovers neuro-fibroblast crosstalk mechanisms across scar types,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,keloid tissue,primary tissue,MONDO:0005348,keloid,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4062,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.266661769213648,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9225694,,,train,sda-all,samples/GSE307504/GSM9225694,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9225694,GSE307504,GSE307504,Single-cell and spatial transcriptomic atlas of pathological scars uncovers neuro-fibroblast crosstalk mechanisms across scar types,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,keloid tissue,primary tissue,MONDO:0005348,keloid,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4062,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.2666617692136475,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9225694,,,train,sda-all,samples/GSE307504/GSM9225694,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9226168,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0024276,glandular cell neoplasm,disease,luna,atypical adenomatous hyperplasia,AAH,aged,age rule: bare number read as years,aged,65,female,female,GSE307534:P1,P1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,10108,18085,counts,pixel,5.701564845196209,platform_constant,True,H&E,5.701564845196209,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226168,,,train,hesrt,samples/GSE307534/GSM9226168,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.52, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM9226169,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,LUAD,aged,age rule: bare number read as years,aged,65,female,female,GSE307534:P1,P1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,6603,18085,counts,pixel,5.217514893973237,platform_constant,True,H&E,5.217514893973237,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,41202811,,GSM9226169,,,train,hesrt,samples/GSE307534/GSM9226169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9226170,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0024276,glandular cell neoplasm,disease,luna,atypical adenomatous hyperplasia,AAH,aged,age rule: bare number read as years,aged,73,male,male,GSE307534:P2,P2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,11782,18085,counts,pixel,6.429312925613559,platform_constant,True,H&E,6.429312925613559,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226170,,,train,hesrt,samples/GSE307534/GSM9226170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.47000000000000003, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation @@ -8702,7 +8702,7 @@ GSM9226200,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung GSM9226201,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,,aged,age rule: bare number read as years,aged,68,female,Female,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13454,18120,counts,um,1.0,verified,True,H&E,6.486557174094152,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41202811,,GSM9226201,,,train,sda-all,samples/GSE307534/GSM9226201,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9226202,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,LUAD,aged,age rule: bare number read as years,aged,68,female,female,GSE307534:P16,P16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,7736,18120,counts,pixel,6.601779429085135,platform_constant,True,H&E,6.601779429085135,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226202,,,train,hesrt,samples/GSE307534/GSM9226202,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9226203,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,,,aged,age rule: bare number read as years,aged,72,male,Male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,14336,18120,counts,um,1.0,verified,True,H&E,6.527022078176779,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41202811,,GSM9226203,,,train,sda-all,samples/GSE307534/GSM9226203,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9226204,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,LUAD,aged,age rule: bare number read as years,aged,72,male,male,GSE307534:P17,P17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13515,18120,counts,pixel,7.499406185739683,platform_constant,True,H&E,7.499406185739683,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226204,,,train,hesrt,samples/GSE307534/GSM9226204,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9226204,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,LUAD,aged,age rule: bare number read as years,aged,72,male,male,GSE307534:P17,P17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13515,18120,counts,pixel,7.4994061857396845,platform_constant,True,H&E,7.4994061857396845,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226204,,,train,hesrt,samples/GSE307534/GSM9226204,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9226205,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,minimally invasive adenocarcinoma,MIA,aged,age rule: bare number read as years,aged,77,female,female,GSE307534:P18,P18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13006,18120,counts,pixel,6.564095601730838,platform_constant,True,H&E,6.564095601730838,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226205,,,train,hesrt,samples/GSE307534/GSM9226205,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9226206,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,LUAD,aged,age rule: bare number read as years,aged,77,female,female,GSE307534:P18,P18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,11971,18120,counts,pixel,6.389858722339835,platform_constant,True,H&E,6.389858722339835,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226206,,,train,hesrt,samples/GSE307534/GSM9226206,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9226207,GSE307534,GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,adenocarcinoma in situ,AIS,aged,age rule: bare number read as years,aged,76,male,male,GSE307534:P19,P19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,13899,18120,counts,pixel,6.568188705411009,platform_constant,True,H&E,6.568188705411009,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41202811,,GSM9226207,,,train,hesrt,samples/GSE307534/GSM9226207,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.85, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, @@ -8785,7 +8785,7 @@ GSM9227507,GSE307588,GSE307588,Spatial profiling of hypoxic injury in human kidn GSM9227508,GSE307588,GSE307588,Spatial profiling of hypoxic injury in human kidney organoids,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,Normoxia,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51637,380,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42613631,,GSM9227508,,,train,sda-all,samples/GSE307588/GSM9227508,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.8, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9227509,GSE307588,GSE307588,Spatial profiling of hypoxic injury in human kidney organoids,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,Normoxia,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52196,380,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42613631,,GSM9227509,,,train,sda-all,samples/GSE307588/GSM9227509,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9227510,GSE307588,GSE307588,Spatial profiling of hypoxic injury in human kidney organoids,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,kidney,luna,UBERON:0002113,kidney,kidney organoid,organoid,,,normal,luna,,Normoxia,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12626,380,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42613631,,GSM9227510,,,train,sda-all,samples/GSE307588/GSM9227510,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.9, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9228905,GSE307661,GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow trephine,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE307661:MM00075,MM00075,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,185674,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999858086489833,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9228905,,,test,sda-all,samples/GSE307661/GSM9228905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9228905,GSE307661,GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow trephine,tumour tissue,MONDO:0009693,plasma cell myeloma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE307661:MM00075,MM00075,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,185674,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998580864898334,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9228905,,,test,sda-all,samples/GSE307661/GSM9228905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9228906,GSE307661,GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow trephine,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,,,not stated,luna,not stated,,unknown,,GSE307661:MM00075,MM00075,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35664,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020664572656,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9228906,,,test,sda-all,samples/GSE307661/GSM9228906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9228907,GSE307661,GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow trephine,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,,,not stated,luna,not stated,,unknown,,GSE307661:MM00263,MM00263,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,73464,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000089779005524,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9228907,,,test,sda-all,samples/GSE307661/GSM9228907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9229872,GSE307719,GSE307719,Cellular and molecular signatures of the vascular microenvironment define the pre-metastatic brain and meninges [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,control (non-tumour bearing),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,150779,550,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,zero_count_observations;near_duplicate_observations,VERIFIED,,,,,,GSM9229872,,,train,sda-all,samples/GSE307719/GSM9229872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -8801,7 +8801,7 @@ GSM9231917,GSE307817,GSE307817,A MEF2C transcription factor network regulates pr GSM9231918,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1373,17943,counts,um,1.0,verified,True,H&E,4.164228098503857,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231918,,,train,sda-all,samples/GSE307817/GSM9231918,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.2, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9231919,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,437,18085,counts,um,1.0,verified,True,H&E,6.709905157284522,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231919,,,train,sda-all,samples/GSE307817/GSM9231919,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9231920,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,977,18085,counts,um,1.0,verified,True,H&E,4.681758251060366,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231920,,,train,sda-all,samples/GSE307817/GSM9231920,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9231921,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,531,18085,counts,um,1.0,verified,True,H&E,2.641609372268705,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231921,,,train,sda-all,samples/GSE307817/GSM9231921,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9231921,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,531,18085,counts,um,1.0,verified,True,H&E,2.6416093722687055,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231921,,,train,sda-all,samples/GSE307817/GSM9231921,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9231922,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1203,18085,counts,um,1.0,verified,True,H&E,3.4090359724508272,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231922,,,train,sda-all,samples/GSE307817/GSM9231922,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9231923,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005300,chronic kidney disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1682,18085,counts,um,1.0,verified,True,H&E,2.653114304899212,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231923,,,train,sda-all,samples/GSE307817/GSM9231923,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.24, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9231924,GSE307817,GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Kidney,primary tissue,MONDO:0005016;MONDO:0005015,diabetic kidney disease;diabetes mellitus,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1394,17943,counts,um,1.0,verified,True,H&E,4.176040421818985,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42055320,,GSM9231924,,,train,sda-all,samples/GSE307817/GSM9231924,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.23, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -8826,7 +8826,7 @@ GSM9233004,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and GSM9233005,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3043,36601,counts,pixel,5.283137075548274,platform_constant,True,H&E,5.283137075548274,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233005,,,train,hesrt,samples/GSE307866/GSM9233005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9233006,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3796,36601,counts,pixel,4.934155788780548,platform_constant,True,H&E,4.934155788780548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233006,,,train,hesrt,samples/GSE307866/GSM9233006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9233007,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3527,36601,counts,pixel,4.937846889128565,platform_constant,True,H&E,4.937846889128565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233007,,,train,hesrt,samples/GSE307866/GSM9233007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9233008,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3027,36601,counts,pixel,4.9327783346118,platform_constant,True,H&E,4.9327783346118,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233008,,,train,hesrt,samples/GSE307866/GSM9233008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9233008,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3027,36601,counts,pixel,4.9327783346117995,platform_constant,True,H&E,4.9327783346117995,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233008,,,train,hesrt,samples/GSE307866/GSM9233008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9233009,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3755,36601,counts,pixel,4.934639360363995,platform_constant,True,H&E,4.934639360363995,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233009,,,train,hesrt,samples/GSE307866/GSM9233009,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9233010,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4056,36601,counts,pixel,4.812995669656054,platform_constant,True,H&E,4.812995669656054,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233010,,,train,hesrt,samples/GSE307866/GSM9233010,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9233011,GSE307866,GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000988,pons,pons,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3640,36601,counts,pixel,4.814508403322837,platform_constant,True,H&E,4.814508403322837,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41278831,,GSM9233011,,,train,hesrt,samples/GSE307866/GSM9233011,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -8886,7 +8886,7 @@ GSM9235047,GSE307990,GSE307990,Spatial and single cell transcriptomics in the hu GSM9235048,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3406,36601,counts,pixel,4.992237791612399,platform_constant,True,H&E,4.992237791612399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235048,,,train,hesrt,samples/GSE307990/GSM9235048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9235049,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2843,36601,counts,pixel,4.992237791612399,platform_constant,True,H&E,4.992237791612399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235049,,,train,hesrt,samples/GSE307990/GSM9235049,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9235050,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3989,36601,counts,pixel,4.952887996883904,platform_constant,True,H&E,4.952887996883904,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235050,,,train,hesrt,samples/GSE307990/GSM9235050,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation -GSM9235051,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4840,36601,counts,pixel,4.952887996883876,platform_constant,True,H&E,4.952887996883876,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235051,,,train,hesrt,samples/GSE307990/GSM9235051,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9235051,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4840,36601,counts,pixel,4.9528879968838755,platform_constant,True,H&E,4.9528879968838755,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235051,,,train,hesrt,samples/GSE307990/GSM9235051,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9235052,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3754,36601,counts,pixel,4.952887996883904,platform_constant,True,H&E,4.952887996883904,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235052,,,train,hesrt,samples/GSE307990/GSM9235052,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9235053,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4059,36601,counts,pixel,4.95288799688389,platform_constant,True,H&E,4.95288799688389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235053,,,train,hesrt,samples/GSE307990/GSM9235053,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9235054,GSE307990,GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002728,entorhinal cortex,entorhinal cortex (ERC),primary tissue,MONDO:0004975,Alzheimer disease,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4677,36601,counts,pixel,4.864621121051455,platform_constant,True,H&E,4.864621121051455,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41332786,,GSM9235054,,,train,hesrt,samples/GSE307990/GSM9235054,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -8909,11 +8909,11 @@ GSM9238738,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transc GSM9238739,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,tumor,tumour tissue,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,395955,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999956375692536,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41266321,,GSM9238739,,,train,sda-all,samples/GSE308148/GSM9238739,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9238740,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,tumor,tumour tissue,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,395341,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999956375692536,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41266321,,GSM9238740,,,train,sda-all,samples/GSE308148/GSM9238740,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9238741,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,normal tissue,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,301975,538,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000055537924467,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,41266321,,GSM9238741,,,train,sda-all,samples/GSE308148/GSM9238741,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 0.97}",, -GSM9238742,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,normal tissue,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,251298,520,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999936366528794,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,41266321,,GSM9238742,,,train,sda-all,samples/GSE308148/GSM9238742,sda-tissue-disease-2.3,"{""organ"": 0.67, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.56, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9238742,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,normal tissue,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,251298,520,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999363665287944,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,41266321,,GSM9238742,,,train,sda-all,samples/GSE308148/GSM9238742,sda-tissue-disease-2.3,"{""organ"": 0.67, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.56, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9238743,GSE308148,GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,normal tissue,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,291023,534,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922472606988,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,41266321,,GSM9238743,,,train,sda-all,samples/GSE308148/GSM9238743,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM9239732,GSE308167,GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,other,10255,9742,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41540123,,GSM9239732,,,train,sda-all,samples/GSE308167/GSM9239732,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9239733,GSE308167,GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node (lymphoma),tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,other,5972,9699,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41540123,,GSM9239733,,,train,sda-all,samples/GSE308167/GSM9239733,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9239734,GSE308167,GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node (lymphoma),tumour tissue,MONDO:0004948;MONDO:0018905,B-cell chronic lymphocytic leukemia;diffuse large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,other,4547,9329,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41540123,,GSM9239734,,,train,sda-all,samples/GSE308167/GSM9239734,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9239732,GSE308167,GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,other,10255,9742,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41540123,,GSM9239732,,,train,sda-all,samples/GSE308167/GSM9239732,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9239733,GSE308167,GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node (lymphoma),tumour tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,other,5972,9699,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41540123,,GSM9239733,,,train,sda-all,samples/GSE308167/GSM9239733,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9239734,GSE308167,GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lymph node,luna,UBERON:0000029,lymph node,Lymph node (lymphoma),tumour tissue,MONDO:0004948;MONDO:0018905,B-cell chronic lymphocytic leukemia;diffuse large B-cell lymphoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,other,4547,9329,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,41540123,,GSM9239734,,,train,sda-all,samples/GSE308167/GSM9239734,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9241214,GSE308260,GSE308260,Spatial transcriptomics for intrathoracic adhesion in mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,Saline-based talc solution was administered into the left thoracic cavity.,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2042,19465,counts,um,1.0,verified,True,H&E-like (heuristic),6.94384056711138,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42230567,,GSM9241214,,,train,sda-all,samples/GSE308260/GSM9241214,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9241521,GSE308275,GSE308275,Integrated single-cell and spatial transcriptomics of ovarian immune landscape reveal role of distinct macrophages in classic galactosemia associated with premature ovarian insufficiency,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1785,18085,counts,um,1.0,verified,True,H&E,4.6644411731959305,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42226209,,GSM9241521,,,train,sda-all,samples/GSE308275/GSM9241521,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9241523,GSE308275,GSE308275,Integrated single-cell and spatial transcriptomics of ovarian immune landscape reveal role of distinct macrophages in classic galactosemia associated with premature ovarian insufficiency,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1660,18085,counts,um,1.0,verified,True,H&E,7.0154489088096,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42226209,,GSM9241523,,,train,sda-all,samples/GSE308275/GSM9241523,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9027,31 +9027,31 @@ GSM9249356,GSE308624,GSE308624,Spatial and functional dissection of cancer-assoc GSM9249357,GSE308624,GSE308624,Spatial and functional dissection of cancer-associated fibroblasts-mediated immune modulation in H. pylori-associated gastric cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,stomach,luna,UBERON:0000945,stomach,gastric cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,,,aged,age rule: bare number read as years,aged,77,unknown,2,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,228,1000,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41194113,,GSM9249357,,,train,sda-all,samples/GSE308624/GSM9249357,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9249358,GSE308624,GSE308624,Spatial and functional dissection of cancer-associated fibroblasts-mediated immune modulation in H. pylori-associated gastric cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,stomach,luna,UBERON:0000945,stomach,gastric cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,,,aged,age rule: bare number read as years,aged,82,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,202,1000,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41194113,,GSM9249358,,,train,sda-all,samples/GSE308624/GSM9249358,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9249359,GSE308624,GSE308624,Spatial and functional dissection of cancer-associated fibroblasts-mediated immune modulation in H. pylori-associated gastric cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,stomach,luna,UBERON:0000945,stomach,gastric cancer,tumour tissue,MONDO:0001056,gastric cancer,disease,luna,,,adult,age rule: bare number read as years,adult,42,unknown,2,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,101,1000,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41194113,,GSM9249359,,,train,sda-all,samples/GSE308624/GSM9249359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.44, ""disease_status"": 0.99, ""uberon"": 0.68, ""life_stage"": 0.99}",sample_kind,low_confidence_annotation -GSM9251639,GSE308697,GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20879,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999870947759652,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251639,,,train,sda-all,samples/GSE308697/GSM9251639,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9251639,GSE308697,GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20879,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998709477596526,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251639,,,train,sda-all,samples/GSE308697/GSM9251639,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9251640,GSE308697,GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,13841,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999837892006602,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251640,,,train,sda-all,samples/GSE308697/GSM9251640,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.68, ""life_stage"": 1.0}",, -GSM9251641,GSE308697,GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8629,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965561575902,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251641,,,train,sda-all,samples/GSE308697/GSM9251641,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9251641,GSE308697,GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8629,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999655615759026,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251641,,,train,sda-all,samples/GSE308697/GSM9251641,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9251642,GSE308697,GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8409,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000171703296703,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251642,,,train,sda-all,samples/GSE308697/GSM9251642,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9251661,GSE308699,GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004992,cancer,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,21943,494,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000140457744396,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251661,,,train,sda-all,samples/GSE308699/GSM9251661,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.42, ""disease_status"": 0.31, ""uberon"": 0.97, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM9251662,GSE308699,GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Retroperitoneal,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,25228,499,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999931072511718,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251662,,,train,sda-all,samples/GSE308699/GSM9251662,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 0.87, ""disease_status"": 0.59, ""uberon"": 0.92, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9251663,GSE308699,GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,bone,luna,UBERON:0001474,bone element,Bone,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5300,422,counts,um,1.0,verified,True,fluorescence: DAPI,0.499997941370224,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251663,,,train,sda-all,samples/GSE308699/GSM9251663,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8, ""disease_status"": 0.31, ""uberon"": 0.53, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9251664,GSE308699,GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,colon,luna,UBERON:0001155,colon,Colon,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,56993,499,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999821200030114,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251664,,,train,sda-all,samples/GSE308699/GSM9251664,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.64, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9251665,GSE308699,GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,Liver,metastasis,MONDO:0005575,colorectal cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7414,422,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998504784689,VERIFIED,FAILED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9251665,,,train,sda-all,samples/GSE308699/GSM9251665,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9256395,GSE308929,GSE308929,An Integrated Transcriptomics Atlas of Healthy Human Skin Focusing on the Pilosebaceous Unit,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0011932,pilosebaceous unit,Skin,primary tissue,,,normal,luna,Healthy,,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,284341,18085,counts,um,1.0,verified,True,H&E,1.2772974850995895,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9256395,,,train,sda-all,samples/GSE308929/GSM9256395,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9256396,GSE308929,GSE308929,An Integrated Transcriptomics Atlas of Healthy Human Skin Focusing on the Pilosebaceous Unit,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0011932,pilosebaceous unit,Skin,primary tissue,,,normal,luna,Healthy,,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,269006,18085,counts,um,1.0,verified,True,H&E,1.0742431304774085,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9256396,,,train,sda-all,samples/GSE308929/GSM9256396,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM9256395,GSE308929,GSE308929,An Integrated Transcriptomics Atlas of Healthy Human Skin Focusing on the Pilosebaceous Unit,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0011932,pilosebaceous unit,Skin,primary tissue,,,normal,luna,Healthy,,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,284341,18085,counts,um,1.0,verified,True,H&E,1.2772974850995897,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9256395,,,train,sda-all,samples/GSE308929/GSM9256395,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9256396,GSE308929,GSE308929,An Integrated Transcriptomics Atlas of Healthy Human Skin Focusing on the Pilosebaceous Unit,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0011932,pilosebaceous unit,Skin,primary tissue,,,normal,luna,Healthy,,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,269006,18085,counts,um,1.0,verified,True,H&E,1.0742431304774083,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9256396,,,train,sda-all,samples/GSE308929/GSM9256396,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9256713,GSE308952,GSE308952,Peripheral glia constitute a pro-reparative niche triggering skin wound healing [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,Regenerating skin wound,primary tissue,,,perturbation,luna,,Tmx intraperitoneal,adult,luna,adult,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,68159,46499,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41512873,,GSM9256713,,,train,sda-all,samples/GSE308952/GSM9256713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.87, ""life_stage"": 1.0}",, GSM9256795,GSE308959,GSE308959,The origin of hepatocellular carcinoma is regulated by metabolic zonation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,MONDO:0007256,hepatocellular carcinoma,disease,mondo_predicate (Luna: perturbation),,Gls2-CreERT2; Ctnnb1(ex3)fl/+; Arid2fl/+; Rosa26LSL-tdTomato/+,juvenile,luna,juvenile,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,162483,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999974125439868,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41196951,,GSM9256795,,,train,sda-all,samples/GSE308959/GSM9256795,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.81, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 0.24}",disease_status;life_stage,low_confidence_annotation GSM9256796,GSE308959,GSE308959,The origin of hepatocellular carcinoma is regulated by metabolic zonation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,MONDO:0007256,hepatocellular carcinoma,disease,mondo_predicate (Luna: perturbation),,Cyp1a2-CreERT2; Ctnnb1(ex3)fl/+; Arid2fl/+; Rosa26LSL-tdTomato/+,adult,luna,adult,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,121919,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000090575021996,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41196951,,GSM9256796,,,train,sda-all,samples/GSE308959/GSM9256796,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 0.34}",life_stage,low_confidence_annotation GSM9256797,GSE308959,GSE308959,The origin of hepatocellular carcinoma is regulated by metabolic zonation [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,WT,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,156456,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999930964653903,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41196951,,GSM9256797,,,train,sda-all,samples/GSE308959/GSM9256797,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.26}",life_stage,low_confidence_annotation GSM9264148,GSE309269,GSE309269,Transcriptional programs dictating tumor cell fate decisions in neuroblastoma lymph node metastasis [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,adrenal gland,luna,UBERON:0002369,adrenal gland,neuroblastoma (primary),tumour tissue,MONDO:0005072,neuroblastoma,disease,luna,neuroblastoma,primary,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,7064,18085,counts,pixel,4.827746402951347,platform_constant,True,H&E,4.827746402951347,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,41279557;42467756,,GSM9264148,,,test,hesrt,samples/GSE309269/GSM9264148,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.86, ""life_stage"": 1.0}",, GSM9264149,GSE309269,GSE309269,Transcriptional programs dictating tumor cell fate decisions in neuroblastoma lymph node metastasis [spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0002429,cervical lymph node,neuroblastoma (lymph node metastasis),metastasis,MONDO:0005072,neuroblastoma,disease,luna,neuroblastoma,lymph node metastasis,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4705,18085,counts,pixel,4.012619659462263,platform_constant,True,H&E,4.012619659462263,HESRT_HUMAN_REVIEW,,,image_partial_coverage,zero_count_observations,human_visual_review,,,,41279557;42467756,,GSM9264149,,,test,hesrt,samples/GSE309269/GSM9264149,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9266971,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Anolis carolinensis,28377,green anole,Anolis carolinensis,28377,,False,False,GEO organism field,Anolis carolinensis,Anolis carolinensis,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,636,21554,counts,pixel,0.3436405826598165,platform_constant,True,H&E,0.5000138771828966,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266971,,,train,hesrt,samples/GSE309408/GSM9266971,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, +GSM9266971,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Anolis carolinensis,28377,green anole,Anolis carolinensis,28377,,False,False,GEO organism field,Anolis carolinensis,Anolis carolinensis,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,636,21554,counts,pixel,0.34364058265981656,platform_constant,True,H&E,0.5000138771828966,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266971,,,train,hesrt,samples/GSE309408/GSM9266971,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, GSM9266972,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Anolis carolinensis,28377,green anole,Anolis carolinensis,28377,,False,False,GEO organism field,Anolis carolinensis,Anolis carolinensis,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,505,21554,counts,pixel,0.3436426116838488,platform_constant,True,H&E,0.5000008426743788,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266972,,,train,hesrt,samples/GSE309408/GSM9266972,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.68, ""life_stage"": 1.0}",, GSM9266973,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Taeniopygia guttata,59729,zebra finch,Taeniopygia guttata,59729,,False,False,GEO organism field,Taeniopygia guttata,Taeniopygia guttata,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1025,16619,counts,pixel,0.3436344958033582,platform_constant,True,H&E,0.5000013281685175,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266973,,,train,hesrt,samples/GSE309408/GSM9266973,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.48, ""life_stage"": 0.97}",uberon,low_confidence_annotation -GSM9266974,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Taeniopygia guttata,59729,zebra finch,Taeniopygia guttata,59729,,False,False,GEO organism field,Taeniopygia guttata,Taeniopygia guttata,eye,luna,UBERON:0000966,retina,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,777,16619,counts,pixel,0.3436344958033582,platform_constant,True,H&E,0.4999933179126438,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266974,,,train,hesrt,samples/GSE309408/GSM9266974,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.71, ""life_stage"": 0.99}",, +GSM9266974,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Taeniopygia guttata,59729,zebra finch,Taeniopygia guttata,59729,,False,False,GEO organism field,Taeniopygia guttata,Taeniopygia guttata,eye,luna,UBERON:0000966,retina,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,777,16619,counts,pixel,0.3436344958033582,platform_constant,True,H&E,0.49999331791264384,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266974,,,train,hesrt,samples/GSE309408/GSM9266974,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.71, ""life_stage"": 0.99}",, GSM9266975,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Taeniopygia guttata,59729,zebra finch,Taeniopygia guttata,59729,,False,False,GEO organism field,Taeniopygia guttata,Taeniopygia guttata,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1109,16619,counts,pixel,0.3436344958033582,platform_constant,True,H&E,0.5000022912852732,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266975,,,train,hesrt,samples/GSE309408/GSM9266975,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9266976,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Taeniopygia guttata,59729,zebra finch,Taeniopygia guttata,59729,,False,False,GEO organism field,Taeniopygia guttata,Taeniopygia guttata,eye,luna,UBERON:0000966,retina,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,479,16619,counts,pixel,0.3436344958033582,platform_constant,True,H&E,0.49999603693032,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266976,,,train,hesrt,samples/GSE309408/GSM9266976,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.51, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM9266977,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Columba livia,8932,rock pigeon,Columba livia,8932,,False,False,GEO organism field,Columba livia,,eye,luna,UBERON:0000966,retina,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1563,15392,counts,pixel,0.3424657534246575,platform_constant,True,H&E,0.4999871395674658,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266977,,,train,hesrt,samples/GSE309408/GSM9266977,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9266978,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,Gallus gallus,eye,luna,UBERON:0000966,retina,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1522,17007,counts,pixel,0.3436405826598165,platform_constant,True,H&E,0.49999460250972,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266978,,,train,hesrt,samples/GSE309408/GSM9266978,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.75, ""life_stage"": 1.0}",, +GSM9266978,GSE309408,GSE309408,Comparative Eye Transcriptome Atlas,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,Gallus gallus,eye,luna,UBERON:0000966,retina,Eye,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1522,17007,counts,pixel,0.34364058265981656,platform_constant,True,H&E,0.49999460250972005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41565811,,GSM9266978,,,train,hesrt,samples/GSE309408/GSM9266978,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.75, ""life_stage"": 1.0}",, GSM9268669,GSE309522,GSE309522,Eosinophils enhance granuloma-mediated control of persistent Salmonella infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0002509,mesenteric lymph node,MLN,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19329,541,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41272146,,GSM9268669,,,train,sda-all,samples/GSE309522/GSM9268669,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9268670,GSE309522,GSE309522,Eosinophils enhance granuloma-mediated control of persistent Salmonella infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0002509,mesenteric lymph node,MLN,primary tissue,,,normal,luna,,No treatment,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32791,541,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41272146,,GSM9268670,,,train,sda-all,samples/GSE309522/GSM9268670,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9268671,GSE309522,GSE309522,Eosinophils enhance granuloma-mediated control of persistent Salmonella infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0002509,mesenteric lymph node,MLN,primary tissue,MONDO:0000827,salmonellosis,disease,luna,,STm SL1344 1e8 CFU oral,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,105002,541,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,PASS,,,41272146,,GSM9268671,,,train,sda-all,samples/GSE309522/GSM9268671,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -9078,27 +9078,27 @@ GSM9287769,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regener GSM9287770,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,"Oligomer-treated volumetric muscle loss, 8 weeks",adult,luna,adult,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1877,25627,counts,pixel,5.044573995940105,platform_constant,True,H&E,5.044573995940105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41796221,,GSM9287770,,,train,hesrt,samples/GSE310073/GSM9287770,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.61, ""uberon"": 0.91, ""life_stage"": 0.37}",life_stage,low_confidence_annotation GSM9287771,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,"Oligomer-treated volumetric muscle loss, 2 weeks",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2159,25627,counts,pixel,5.00897396334364,platform_constant,True,H&E,5.00897396334364,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41796221,,GSM9287771,,,train,hesrt,samples/GSE310073/GSM9287771,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.48, ""uberon"": 0.96, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9287772,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,"Oligomer-treated volumetric muscle loss, 2 weeks",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1941,25627,counts,pixel,5.039860635012982,platform_constant,True,H&E,5.039860635012982,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41796221,,GSM9287772,,,train,hesrt,samples/GSE310073/GSM9287772,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.53, ""uberon"": 0.91, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9287773,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,"Oligomer-treated volumetric muscle loss, 2 weeks",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2538,25627,counts,pixel,4.468891131108268,platform_constant,True,H&E,4.468891131108268,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41796221,,GSM9287773,,,train,hesrt,samples/GSE310073/GSM9287773,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.44, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9287773,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,"Oligomer-treated volumetric muscle loss, 2 weeks",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2538,25627,counts,pixel,4.4688911311082675,platform_constant,True,H&E,4.4688911311082675,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41796221,,GSM9287773,,,train,hesrt,samples/GSE310073/GSM9287773,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.44, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9287774,GSE310073,GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,"Oligomer-treated volumetric muscle loss, 2 weeks",not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1865,25627,counts,pixel,4.468891131108228,platform_constant,True,H&E,4.468891131108228,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41796221,,GSM9287774,,,train,hesrt,samples/GSE310073/GSM9287774,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.68, ""uberon"": 0.96, ""life_stage"": 0.99}",, -GSM9288671,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,perturbation,luna,,GLA-3M-052-LS+OVA,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),"Curio Trekker (single-cell, Slide-seq beads)",sequencing-based,other,,,cell,18948,30881,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41712698,,GSM9288671,,,train,sda-all,samples/GSE310116/GSM9288671,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9288673,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,perturbation,luna,,anti-cd4cd8 treatment,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),"Curio Trekker (single-cell, Slide-seq beads)",sequencing-based,other,,,cell,19873,31188,counts,unstated,,unresolved,False,,,,,,units_unstated,near_duplicate_observations,VERIFIED,,,,41712698,,GSM9288673,,,train,sda-all,samples/GSE310116/GSM9288673,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9288675,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,NAÏVE,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),"Curio Trekker (single-cell, Slide-seq beads)",sequencing-based,other,,,cell,14317,31617,counts,unstated,,unresolved,False,,,,,,units_unstated,near_duplicate_observations,VERIFIED,,,,41712698,,GSM9288675,,,train,sda-all,samples/GSE310116/GSM9288675,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9288677,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,perturbation,luna,,"GLA-3M-052-LS+OVA, and anti-cd4cd8 treatment",not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),"Curio Trekker (single-cell, Slide-seq beads)",sequencing-based,other,,,cell,13617,30694,counts,unstated,,unresolved,False,,,,,,units_unstated,near_duplicate_observations,VERIFIED,,,,41712698,,GSM9288677,,,train,sda-all,samples/GSE310116/GSM9288677,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9288671,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,perturbation,luna,,GLA-3M-052-LS+OVA,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),Curio Trekker,sequencing-based,other,,,cell,18948,30881,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,41712698,,GSM9288671,,,train,sda-all,samples/GSE310116/GSM9288671,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9288673,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,perturbation,luna,,anti-cd4cd8 treatment,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),Curio Trekker,sequencing-based,other,,,cell,19873,31188,counts,unstated,,unresolved,False,,,,,,units_unstated,near_duplicate_observations,VERIFIED,,,,41712698,,GSM9288673,,,train,sda-all,samples/GSE310116/GSM9288673,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9288675,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,NAÏVE,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),Curio Trekker,sequencing-based,other,,,cell,14317,31617,counts,unstated,,unresolved,False,,,,,,units_unstated,near_duplicate_observations,VERIFIED,,,,41712698,,GSM9288675,,,train,sda-all,samples/GSE310116/GSM9288675,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9288677,GSE310116,GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,perturbation,luna,,"GLA-3M-052-LS+OVA, and anti-cd4cd8 treatment",not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),Curio Trekker,sequencing-based,other,,,cell,13617,30694,counts,unstated,,unresolved,False,,,,,,units_unstated,near_duplicate_observations,VERIFIED,,,,41712698,,GSM9288677,,,train,sda-all,samples/GSE310116/GSM9288677,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9289223,GSE310129,GSE310129,Spatial transcriptome sequencing of chicken and duck beaks,Anas platyrhynchos,8839,mallard,Anas platyrhynchos,8839,,False,False,GEO organism field,Anas platyrhynchos,,head and neck,uberon_chain,UBERON:0005094,beak,Embryo beak,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,22674,20858,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9289223,,,train,sda-all,samples/GSE310129/GSM9289223,sda-tissue-disease-2.4,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9289224,GSE310129,GSE310129,Spatial transcriptome sequencing of chicken and duck beaks,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,Gallus gallus,head and neck,uberon_chain,UBERON:0005094,beak,Embryo beak,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,43687,20150,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9289224,,,train,sda-all,samples/GSE310129/GSM9289224,sda-tissue-disease-2.4,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9289225,GSE310129,GSE310129,Spatial transcriptome sequencing of chicken and duck beaks,Anas platyrhynchos,8839,mallard,Anas platyrhynchos,8839,,False,False,GEO organism field,Anas platyrhynchos,,head and neck,uberon_chain,UBERON:0005094,beak,Embryo beak,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,46306,21658,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9289225,,,train,sda-all,samples/GSE310129/GSM9289225,sda-tissue-disease-2.4,"{""organ"": 0.77, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9290277,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,61,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60275,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051036031438,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9290277,,,train,sda-all,samples/GSE310162/GSM9290277,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9290278,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,61,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46291,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999988620846607,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9290278,,,train,sda-all,samples/GSE310162/GSM9290278,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9290278,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,61,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46291,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999886208466077,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9290278,,,train,sda-all,samples/GSE310162/GSM9290278,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9290279,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,aged,age rule: bare number read as years,aged,72,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86009,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000203832042397,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9290279,,,train,sda-all,samples/GSE310162/GSM9290279,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9290280,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,60,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55869,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999846578705124,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9290280,,,train,sda-all,samples/GSE310162/GSM9290280,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9290280,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,60,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55869,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998465787051244,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9290280,,,train,sda-all,samples/GSE310162/GSM9290280,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714910,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,184435,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999927181638122,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714910,,,train,sda-all,samples/GSE310162/GSM9714910,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9714911,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,142916,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999949235142817,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714911,,,train,sda-all,samples/GSE310162/GSM9714911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9714911,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,142916,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999492351428176,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714911,,,train,sda-all,samples/GSE310162/GSM9714911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714912,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,47,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,279263,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714912,,,train,sda-all,samples/GSE310162/GSM9714912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714913,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,47,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,315205,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000102634918265,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714913,,,train,sda-all,samples/GSE310162/GSM9714913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9714914,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,51,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,168520,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499996523593214,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714914,,,train,sda-all,samples/GSE310162/GSM9714914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9714914,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,51,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,168520,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999652359321406,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714914,,,train,sda-all,samples/GSE310162/GSM9714914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714915,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,51,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,117403,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025725457913,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714915,,,train,sda-all,samples/GSE310162/GSM9714915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9714916,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,58,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32382,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499978336221837,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714916,,,train,sda-all,samples/GSE310162/GSM9714916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9714917,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,58,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,97685,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999878147847278,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714917,,,train,sda-all,samples/GSE310162/GSM9714917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9714916,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,58,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32382,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997833622183707,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714916,,,train,sda-all,samples/GSE310162/GSM9714916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9714917,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,58,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,97685,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998781478472787,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714917,,,train,sda-all,samples/GSE310162/GSM9714917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9714918,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,50,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,70695,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500028801843318,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714918,,,train,sda-all,samples/GSE310162/GSM9714918,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714919,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,50,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,133729,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965668772315,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714919,,,train,sda-all,samples/GSE310162/GSM9714919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714920,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,aged,age rule: bare number read as years,aged,72,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,143969,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999959638359703,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714920,,,train,sda-all,samples/GSE310162/GSM9714920,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -9108,7 +9108,7 @@ GSM9714923,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescenc GSM9714924,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67502,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961268332989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714924,,,train,sda-all,samples/GSE310162/GSM9714924,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714925,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0004849,pulmonary emphysema,disease,luna,COPD,,adult,age rule: bare number read as years,adult,57,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67326,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000117980179329,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714925,,,train,sda-all,samples/GSE310162/GSM9714925,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9714926,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,56,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,106542,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000085875240451,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714926,,,train,sda-all,samples/GSE310162/GSM9714926,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9714927,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,56,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,71688,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845233182005,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714927,,,train,sda-all,samples/GSE310162/GSM9714927,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9714927,GSE310162,GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,Normal,,adult,age rule: bare number read as years,adult,56,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,71688,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998452331820054,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9714927,,,train,sda-all,samples/GSE310162/GSM9714927,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9294393,GSE310351,GSE310351,Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0007318,saphenous vein,Human saphenous vein,primary tissue,,,disease,luna,,Day 0,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1101,37082,counts,pixel,4.062508830758159,platform_constant,True,H&E,4.062508830758159,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41569144,,GSM9294393,,,train,hesrt,samples/GSE310351/GSM9294393,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9294394,GSE310351,GSE310351,Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0007318,saphenous vein,Human saphenous vein,primary tissue,,,disease,luna,,Day 7,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1009,37082,counts,pixel,4.980981506829042,platform_constant,True,H&E,4.980981506829042,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41569144,,GSM9294394,,,train,hesrt,samples/GSE310351/GSM9294394,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM9294395,GSE310351,GSE310351,Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0007318,saphenous vein,Human saphenous vein,primary tissue,,,disease,luna,,Day 0,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,897,37082,counts,pixel,4.067206418711963,platform_constant,True,H&E,4.067206418711963,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41569144,,GSM9294395,,,train,hesrt,samples/GSE310351/GSM9294395,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 0.97}",disease_status,low_confidence_annotation @@ -9132,20 +9132,20 @@ GSM9295077,GSE310386,GSE310386,Oral bacterial dysbiosis drives autoimmune heart GSM9295078,GSE310386,GSE310386,Oral bacterial dysbiosis drives autoimmune heart disease via molecular mimicry,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005267,heart disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8945,541,counts,um,1.0,verified,False,,,WITHHELD,VERIFIED,VERIFIED,hesrt_review_fail,,VERIFIED,PASS,,,,,GSM9295078,,,train,sda-all,samples/GSE310386/GSM9295078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation GSM9295079,GSE310386,GSE310386,Oral bacterial dysbiosis drives autoimmune heart disease via molecular mimicry,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005267,heart disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26990,541,counts,um,1.0,verified,False,,,WITHHELD,VERIFIED,VERIFIED,hesrt_review_fail,,VERIFIED,PASS,,,,,GSM9295079,,,train,sda-all,samples/GSE310386/GSM9295079,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation GSM9295276,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,neonatal or infant,luna,neonatal or infant,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,194740,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.499984952223309,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295276,,,train,sda-all,samples/GSE310392/GSM9295276,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.99, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation -GSM9295277,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,139935,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989660876757,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295277,,,train,sda-all,samples/GSE310392/GSM9295277,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.86}",disease_status,low_confidence_annotation +GSM9295277,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,139935,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999896608767574,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295277,,,train,sda-all,samples/GSE310392/GSM9295277,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.86}",disease_status,low_confidence_annotation GSM9295278,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,188213,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896562100354,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295278,,,train,sda-all,samples/GSE310392/GSM9295278,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9295279,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,93791,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999780701754385,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295279,,,train,sda-all,samples/GSE310392/GSM9295279,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9295279,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,93791,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997807017543855,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295279,,,train,sda-all,samples/GSE310392/GSM9295279,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9295280,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,173043,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999821428571428,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295280,,,train,sda-all,samples/GSE310392/GSM9295280,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9295281,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,128030,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077634393761,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295281,,,train,sda-all,samples/GSE310392/GSM9295281,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.99, ""life_stage"": 0.92}",, -GSM9295282,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,203086,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999888527931714,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295282,,,train,sda-all,samples/GSE310392/GSM9295282,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, +GSM9295282,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,203086,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998885279317146,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295282,,,train,sda-all,samples/GSE310392/GSM9295282,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM9295283,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,225989,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000063690210814,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295283,,,train,sda-all,samples/GSE310392/GSM9295283,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9295284,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,237982,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922381675176,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295284,,,train,sda-all,samples/GSE310392/GSM9295284,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.99, ""life_stage"": 0.98}",disease_status,low_confidence_annotation -GSM9295285,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,83621,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999879807692308,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295285,,,train,sda-all,samples/GSE310392/GSM9295285,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9295284,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,237982,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999223816751764,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295284,,,train,sda-all,samples/GSE310392/GSM9295284,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.99, ""life_stage"": 0.98}",disease_status,low_confidence_annotation +GSM9295285,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,83621,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998798076923084,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295285,,,train,sda-all,samples/GSE310392/GSM9295285,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9295286,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,tumour tissue,MONDO:0004992,cancer,disease,luna,,sbr,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,85999,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.499979353773098,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295286,,,train,sda-all,samples/GSE310392/GSM9295286,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9295287,GSE310392,GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,sham,adult,luna,adult,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,166376,13590,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137892995036,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41576948,,GSM9295287,,,train,sda-all,samples/GSE310392/GSM9295287,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.99, ""life_stage"": 0.9400000000000001}",disease_status,low_confidence_annotation GSM9301207,GSE310443,GSE310443,Single-cell Spatial Transcriptomics Reveals Hepatocyte Metabolic Reprogramming in Fontan Associated Liver Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,63442,6175,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41734025,,GSM9301207,,,train,sda-all,samples/GSE310443/GSM9301207,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9301208,GSE310443,GSE310443,Single-cell Spatial Transcriptomics Reveals Hepatocyte Metabolic Reprogramming in Fontan Associated Liver Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,Liver,primary tissue,MONDO:0979326,Fontan-associated liver disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,291840,6175,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41734025,,GSM9301208,,,train,sda-all,samples/GSE310443/GSM9301208,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9304326,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,whole embryo section,whole embryo/organism,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E12.5,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,87360,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999870947759652,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304326,,,val,sda-all,samples/GSE310599/GSM9304326,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9304326,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,whole embryo section,whole embryo/organism,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E12.5,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,87360,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998709477596526,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304326,,,val,sda-all,samples/GSE310599/GSM9304326,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9304327,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,whole embryo section,whole embryo/organism,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E12.5,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,83239,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025815778604,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304327,,,val,sda-all,samples/GSE310599/GSM9304327,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9304328,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,whole embryo section,whole embryo/organism,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E12.5,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77076,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000088422541853,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304328,,,val,sda-all,samples/GSE310599/GSM9304328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9304329,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,whole embryo section,whole embryo/organism,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E12.5,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,85639,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999837892006602,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304329,,,val,sda-all,samples/GSE310599/GSM9304329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9156,12 +9156,12 @@ GSM9304333,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neu GSM9304334,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E18.5,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,83051,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000124120810923,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304334,,,val,sda-all,samples/GSE310599/GSM9304334,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.86}",, GSM9304335,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E18.5,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,123258,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500017686593562,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304335,,,val,sda-all,samples/GSE310599/GSM9304335,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.89}",, GSM9304336,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E18.5,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,115479,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499984952223309,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304336,,,val,sda-all,samples/GSE310599/GSM9304336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9304337,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E18.5,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,111474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999839272593681,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304337,,,val,sda-all,samples/GSE310599/GSM9304337,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.77}",, +GSM9304337,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,embryonic,age rule: embryonic day,embryonic,E18.5,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,111474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998392725936813,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304337,,,val,sda-all,samples/GSE310599/GSM9304337,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.77}",, GSM9304338,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,neonatal or infant,age rule: postnatal day,neonatal or infant,P1,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,123209,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000091827364554,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304338,,,val,sda-all,samples/GSE310599/GSM9304338,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9304339,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,neonatal or infant,age rule: postnatal day,neonatal or infant,P1,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,118278,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000154830718414,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304339,,,val,sda-all,samples/GSE310599/GSM9304339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9304340,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,neonatal or infant,age rule: postnatal day,neonatal or infant,P1,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,115109,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000235682300259,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304340,,,val,sda-all,samples/GSE310599/GSM9304340,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9304341,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,neonatal or infant,age rule: postnatal day,neonatal or infant,P1,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,107596,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999720226175049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304341,,,val,sda-all,samples/GSE310599/GSM9304341,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9304473,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,No Lung Disease,fetal,luna,fetal,13 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,838,17943,counts,pixel,3.990434422338111,platform_constant,True,H&E,3.990434422338111,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304473,,,train,hesrt,samples/GSE310610/GSM9304473,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9304341,GSE310599,GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,whole-brain section,primary tissue,,,normal,luna,,WT mouse,neonatal or infant,age rule: postnatal day,neonatal or infant,P1,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,107596,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997202261750495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9304341,,,val,sda-all,samples/GSE310599/GSM9304341,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9304473,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,No Lung Disease,fetal,luna,fetal,13 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,838,17943,counts,pixel,3.9904344223381107,platform_constant,True,H&E,3.9904344223381107,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304473,,,train,hesrt,samples/GSE310610/GSM9304473,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9304474,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,No Lung Disease,fetal,luna,fetal,13 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3792,17943,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304474,,,train,hesrt,samples/GSE310610/GSM9304474,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM9304475,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,No Lung Disease,fetal,luna,fetal,15 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3271,17943,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304475,,,train,hesrt,samples/GSE310610/GSM9304475,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9304476,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0700126,trisomy 21,disease,luna,Trisomy 21,Trisomy 21,fetal,luna,fetal,16 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4411,17943,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304476,,,train,hesrt,samples/GSE310610/GSM9304476,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9174,7 +9174,7 @@ GSM9304482,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo GSM9304483,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0700126,trisomy 21,disease,luna,Trisomy 21,Trisomy 21,fetal,luna,fetal,19 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4558,17943,counts,pixel,3.9133024009741617,platform_constant,True,H&E,3.9133024009741617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304483,,,train,hesrt,samples/GSE310610/GSM9304483,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9304484,GSE310610,GSE310610,Spatial Transcriptomics of Human Fetal Lungs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,No Lung Disease,fetal,luna,fetal,20 weeks,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4399,17943,counts,pixel,4.0,platform_constant,True,H&E,4.0,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41484334,,GSM9304484,,,train,hesrt,samples/GSE310610/GSM9304484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9305563,GSE310658,GSE310658,Xenium In Situ analysis of mouse skin mock-treated or treated with SspA and HDM,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skin,luna,UBERON:0000014,zone of skin,Whole dorsal skin,primary tissue,,,normal,luna,,Mock (epicutaneous PBS),not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,15908,501,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000120230843219,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9305563,,,train,sda-all,samples/GSE310658/GSM9305563,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation -GSM9305564,GSE310658,GSE310658,Xenium In Situ analysis of mouse skin mock-treated or treated with SspA and HDM,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skin,luna,UBERON:0002097,skin of body,Whole dorsal skin,primary tissue,,,perturbation,luna,,Epicutaneous SspA+HDM,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46097,539,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999888326384752,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9305564,,,train,sda-all,samples/GSE310658/GSM9305564,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9305564,GSE310658,GSE310658,Xenium In Situ analysis of mouse skin mock-treated or treated with SspA and HDM,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skin,luna,UBERON:0002097,skin of body,Whole dorsal skin,primary tissue,,,perturbation,luna,,Epicutaneous SspA+HDM,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46097,539,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998883263847527,VERIFIED,VERIFIED,VERIFIED,hesrt_review_fail;hesrt_fail_image_released,,VERIFIED,PASS,,,,,GSM9305564,,,train,sda-all,samples/GSE310658/GSM9305564,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9309230,GSE310797,GSE310797,Single cell and Spatial RNA-seq in Oral Squamous Cell Carcinoma with Different Stage,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,oral cavity,luna,UBERON:0000167,oral cavity,OSCC tumor,tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1171,18085,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41851114,,GSM9309230,,,train,sda-all,samples/GSE310797/GSM9309230,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9309231,GSE310797,GSE310797,Single cell and Spatial RNA-seq in Oral Squamous Cell Carcinoma with Different Stage,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,oral cavity,luna,UBERON:0000167,oral cavity,OSCC tumor,tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,2338,18085,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41851114,,GSM9309231,,,train,sda-all,samples/GSE310797/GSM9309231,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 1.0}",, GSM9309232,GSE310797,GSE310797,Single cell and Spatial RNA-seq in Oral Squamous Cell Carcinoma with Different Stage,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,oral cavity,luna,UBERON:0000167,oral cavity,OSCC tumor,tumour tissue,MONDO:0004958,oral cavity squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,1990,18085,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,41851114,,GSM9309232,,,train,sda-all,samples/GSE310797/GSM9309232,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, @@ -9182,29 +9182,29 @@ GSM9312233,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skel GSM9312234,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001377,quadriceps femoris,Quadriceps Muscle,primary tissue,,,normal,luna,,Immediate Freeze (CTR),not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2818,32285,counts,um,1.0,verified,True,H&E,4.00696585313117,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312234,,,train,sda-all,samples/GSE310921/GSM9312234,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.8, ""life_stage"": 1.0}",, GSM9312235,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001377,quadriceps femoris,Quadriceps Muscle,primary tissue,,,perturbation,luna,,Transplant Solution 24hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2718,32285,counts,um,1.0,verified,True,H&E,3.9799359186422136,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312235,,,train,sda-all,samples/GSE310921/GSM9312235,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.92, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9312236,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001377,quadriceps femoris,Quadriceps Muscle,primary tissue,,,perturbation,luna,,Transplant Solution 24hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2736,32285,counts,um,1.0,verified,True,H&E,3.9836025352406006,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312236,,,train,sda-all,samples/GSE310921/GSM9312236,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.49, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation -GSM9312237,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001377,quadriceps femoris,Quadriceps Muscle,primary tissue,,,perturbation,luna,,Postmortem 48hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2745,32285,counts,um,1.0,verified,True,H&E,3.929829145537272,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312237,,,train,sda-all,samples/GSE310921/GSM9312237,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.61, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9312237,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001377,quadriceps femoris,Quadriceps Muscle,primary tissue,,,perturbation,luna,,Postmortem 48hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2745,32285,counts,um,1.0,verified,True,H&E,3.9298291455372714,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312237,,,train,sda-all,samples/GSE310921/GSM9312237,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.61, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9312238,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skeletal muscle,luna,UBERON:0001377,quadriceps femoris,Quadriceps Muscle,primary tissue,,,perturbation,luna,,Postmortem 48hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2684,32285,counts,um,1.0,verified,True,H&E,3.971653797229367,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312238,,,train,sda-all,samples/GSE310921/GSM9312238,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.8300000000000001, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9312239,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skeletal muscle,luna,UBERON:0002381,pectoralis major,Pectoralis Major,primary tissue,,,perturbation,luna,,Transplant Solution 24hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2168,36601,counts,um,1.0,verified,True,H&E,4.179825593540337,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312239,,,train,sda-all,samples/GSE310921/GSM9312239,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9312240,GSE310921,GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skeletal muscle,luna,UBERON:0002381,pectoralis major,Pectoralis Major,primary tissue,,,perturbation,luna,,Transplant Solution 24hr,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1939,36601,counts,um,1.0,verified,True,H&E,4.218754565904826,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9312240,,,train,sda-all,samples/GSE310921/GSM9312240,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9317397,GSE311123,GSE311123,Spatial analysis revealed localization of osteblastogenesis-inhibitory factors in Giant Cell Tumor of Bone,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone,luna,UBERON:0000981,femur,Distal femur,tumour tissue,MONDO:0005674;MONDO:0002171,bone giant cell tumor;giant cell tumor,disease,luna,Giant Cell Tumor of Bone,surgical curettage,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,18085,counts,pixel,8.883456876836373,platform_constant,True,H&E,8.883456876836373,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41872383,,GSM9317397,,,val,hesrt,samples/GSE311123/GSM9317397,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.72, ""life_stage"": 1.0}",, -GSM9320917,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,6275,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320917,,,train,sda-all,samples/GSE311199/GSM9320917,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9320919,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,6199,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320919,,,train,sda-all,samples/GSE311199/GSM9320919,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9320921,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Mouse embryo,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,32799,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320921,,,train,sda-all,samples/GSE311199/GSM9320921,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM9320923,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Human melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,6268,62700,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320923,,,train,sda-all,samples/GSE311199/GSM9320923,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, -GSM9738330,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Human melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,tissue,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,6381,62700,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9738330,,,train,sda-all,samples/GSE311199/GSM9738330,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, -GSM9738332,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Mouse embryo,primary tissue,,,normal,luna,,tissue,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,17278,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9738332,,,train,sda-all,samples/GSE311199/GSM9738332,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6000000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9738334,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Mouse embryo,primary tissue,,,normal,luna,,tissue,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,14784,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9738334,,,train,sda-all,samples/GSE311199/GSM9738334,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9320917,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,6275,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320917,,,train,sda-all,samples/GSE311199/GSM9320917,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9320919,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Mouse brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,6199,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320919,,,train,sda-all,samples/GSE311199/GSM9320919,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9320921,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Mouse embryo,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,32799,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320921,,,train,sda-all,samples/GSE311199/GSM9320921,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM9320923,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Human melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,6268,62700,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9320923,,,train,sda-all,samples/GSE311199/GSM9320923,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, +GSM9738330,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Human melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,tissue,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,6381,62700,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9738330,,,train,sda-all,samples/GSE311199/GSM9738330,sda-tissue-disease-2.3,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, +GSM9738332,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Mouse embryo,primary tissue,,,normal,luna,,tissue,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,17278,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9738332,,,train,sda-all,samples/GSE311199/GSM9738332,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6000000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9738334,GSE311199,GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Mouse embryo,primary tissue,,,normal,luna,,tissue,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,14784,48440,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42641604,,GSM9738334,,,train,sda-all,samples/GSE311199/GSM9738334,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9322957,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3742,18085,counts,pixel,7.0061248594673,platform_constant,True,H&E,7.0061248594673,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9322957,,,train,hesrt,samples/GSE311294/GSM9322957,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9322958,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4732,18085,counts,pixel,6.953015733910887,platform_constant,True,H&E,6.953015733910887,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9322958,,,train,hesrt,samples/GSE311294/GSM9322958,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9322959,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3673,18085,counts,pixel,12.641669245169885,platform_constant,True,H&E,12.641669245169885,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9322959,,,train,hesrt,samples/GSE311294/GSM9322959,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9322960,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4362,18085,counts,pixel,12.79207274373086,platform_constant,True,H&E,12.79207274373086,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,,,GSM9322960,,,train,hesrt,samples/GSE311294/GSM9322960,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9322961,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4564,18085,counts,pixel,12.698463345892325,platform_constant,True,H&E,12.698463345892325,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9322961,,,train,hesrt,samples/GSE311294/GSM9322961,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9322960,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4362,18085,counts,pixel,12.792072743730861,platform_constant,True,H&E,12.792072743730861,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,,,GSM9322960,,,train,hesrt,samples/GSE311294/GSM9322960,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9322961,GSE311294,GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,primary colorectal cancer,tumour tissue,MONDO:0005575,colorectal cancer,disease,luna,colorectal cancer,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4564,18085,counts,pixel,12.698463345892323,platform_constant,True,H&E,12.698463345892323,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9322961,,,train,hesrt,samples/GSE311294/GSM9322961,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9324190,GSE311369,GSE311369,A Complete Spatial Map of Mouse Retinal Ganglion Cells Reveals Density and Gene Expression Specializations [RGC_CrossSection],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,eye,luna,UBERON:0000966,retina,retina,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,14886,5027,unknown,um,1.0,verified,True,fluorescence: DAPI,0.5000103576854025,VERIFIED,FAILED,FAILED,,,VERIFIED,PASS,,,41452983,,GSM9324190,,,train,sda-all,samples/GSE311369/GSM9324190,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9324328,GSE311383,GSE311383,High-resolution spatial transcriptomics of human liver with VisiumHD,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver Caudate,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,51,male,Male,,,FFPE,Formalin-fixed paraffin-embedded,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,640313,18085,counts,um,1.0,verified,True,H&E-like (heuristic),2.4739122790263584,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42342734,,GSM9324328,,,train,sda-all,samples/GSE311383/GSM9324328,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.73, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9324329,GSE311383,GSE311383,High-resolution spatial transcriptomics of human liver with VisiumHD,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver Caudate,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,47,female,Female,,,FFPE,Formalin-fixed paraffin-embedded,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,466284,18085,counts,um,1.0,verified,True,H&E-like (heuristic),1.7851266739931295,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42342734,,GSM9324329,,,train,sda-all,samples/GSE311383/GSM9324329,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.77, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9324330,GSE311383,GSE311383,High-resolution spatial transcriptomics of human liver with VisiumHD,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0001114,right lobe of liver,Liver Right Lobe,primary tissue,,,normal,luna,,,juvenile,luna,juvenile,15-19,male,Male,,,FFPE,Formalin-fixed paraffin-embedded,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,452402,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.622251882262378,VERIFIED,ABSENT,ABSENT,,zero_count_observations,VERIFIED,PASS,,,42342734,,GSM9324330,,,train,sda-all,samples/GSE311383/GSM9324330,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.98}",disease_status,low_confidence_annotation GSM9509134,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,Adenocarcinoma with mixed subtypes,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67705,6684,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000265330188679,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509134,,,val,sda-all,samples/GSE311609/GSM9509134,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9509135,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,"Adenocarcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219228,6446,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941724941724,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509135,,,val,sda-all,samples/GSE311609/GSM9509135,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9509135,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,"Adenocarcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219228,6446,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999417249417244,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509135,,,val,sda-all,samples/GSE311609/GSM9509135,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509136,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0004965;MONDO:0005233,acinar cell carcinoma;non-small cell lung carcinoma,disease,luna,Acinar cell carcinoma,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64883,5606,counts,um,1.0,verified,True,fluorescence: DAPI,0.500017686593562,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509136,,,val,sda-all,samples/GSE311609/GSM9509136,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509137,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,"Sq. cell carcinoma, keratinizing, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64819,6210,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000045934772622,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509137,,,val,sda-all,samples/GSE311609/GSM9509137,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509138,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,"Adenocarcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,36829,5335,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999862372694742,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509138,,,val,sda-all,samples/GSE311609/GSM9509138,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9222,13 +9222,13 @@ GSM9509149,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival H GSM9509150,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,"Sq. cell carcinoma, keratinizing, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,677474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999875862068965,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509150,,,val,sda-all,samples/GSE311609/GSM9509150,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509151,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0004965;MONDO:0005233,acinar cell carcinoma;non-small cell lung carcinoma,disease,luna,Acinar cell carcinoma,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50050,520,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999985269856233,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509151,,,val,sda-all,samples/GSE311609/GSM9509151,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509152,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,"Sq. cell carcinoma, keratinizing, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57588,535,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999985269856233,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509152,,,val,sda-all,samples/GSE311609/GSM9509152,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9509153,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,"Adenocarcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,43887,511,counts,um,1.0,verified,True,fluorescence: DAPI,0.499993548720066,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509153,,,val,sda-all,samples/GSE311609/GSM9509153,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9509153,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,"Adenocarcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,43887,511,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999354872006607,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509153,,,val,sda-all,samples/GSE311609/GSM9509153,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509154,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233;MONDO:0004970,non-small cell lung carcinoma;adenocarcinoma,disease,luna,"Adenocarcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16837,442,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000112849834486,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509154,,,val,sda-all,samples/GSE311609/GSM9509154,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509155,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,primary NSCLC,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,"Sq. cell carcinoma, keratinizing, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,63674,528,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000172239573765,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509155,,,val,sda-all,samples/GSE311609/GSM9509155,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509156,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Infiltrating duct carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69009,498,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000112849834486,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509156,,,val,sda-all,samples/GSE311609/GSM9509156,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509157,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Infiltrating duct carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16589,446,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941023826374,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509157,,,val,sda-all,samples/GSE311609/GSM9509157,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509158,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0000552,breast lobular carcinoma,disease,luna,"Lobular carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38023,457,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077407369181,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509158,,,val,sda-all,samples/GSE311609/GSM9509158,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9509159,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,Infiltr. duct mixed with other types of carcinoma,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77463,532,counts,um,1.0,verified,True,fluorescence: DAPI,0.499995297923563,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509159,,,val,sda-all,samples/GSE311609/GSM9509159,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9509159,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,Infiltr. duct mixed with other types of carcinoma,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77463,532,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999529792356306,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509159,,,val,sda-all,samples/GSE311609/GSM9509159,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9509160,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Infiltrating duct carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,145946,525,counts,um,1.0,verified,True,fluorescence: DAPI,0.500011932035128,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509160,,,val,sda-all,samples/GSE311609/GSM9509160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509161,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Infiltrating duct carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45496,456,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000134308620546,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509161,,,val,sda-all,samples/GSE311609/GSM9509161,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9509162,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0003214,breast cancer;apocrine adenocarcinoma,disease,luna,Apocrine adenocarcinoma,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,153365,536,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051741470048,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509162,,,val,sda-all,samples/GSE311609/GSM9509162,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9236,7 +9236,7 @@ GSM9509163,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival H GSM9509164,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,66381,529,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077407369181,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509164,,,val,sda-all,samples/GSE311609/GSM9509164,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9509165,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Infiltrating duct carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38496,525,counts,um,1.0,verified,True,fluorescence: DAPI,0.50001036116045,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509165,,,val,sda-all,samples/GSE311609/GSM9509165,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9509166,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Infiltrating duct carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,98420,536,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137892995036,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509166,,,val,sda-all,samples/GSE311609/GSM9509166,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9509167,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48542,514,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999650837988827,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509167,,,val,sda-all,samples/GSE311609/GSM9509167,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9509167,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48542,514,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996508379888277,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509167,,,val,sda-all,samples/GSE311609/GSM9509167,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9509168,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52999,517,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103422339225,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509168,,,val,sda-all,samples/GSE311609/GSM9509168,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9509169,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254;MONDO:0004993,breast cancer;carcinoma,disease,luna,"Carcinoma, NOS",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,96077,514,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068913238233,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509169,,,val,sda-all,samples/GSE311609/GSM9509169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9509170,GSE311609,GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,breast,luna,UBERON:0000310,breast,primary breast cancer,tumour tissue,MONDO:0007254,breast cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,135290,529,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068913238233,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42062553,,GSM9509170,,,val,sda-all,samples/GSE311609/GSM9509170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, @@ -9264,7 +9264,7 @@ Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,disease,luna,, GSM9330228,GSE311717,GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis;Sus scrofa,9541;9823,,False,True,GEO organism field,"Macaca fascicularis Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,disease,luna,,aCD154 (C10)+ Abatacept,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,219,74220,counts,um,1.0,verified,True,H&E,4.355436691476438,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9330228,,,train,sda-all,samples/GSE311717/GSM9330228,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.74, ""disease_status"": 0.52, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9330229,GSE311717,GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis;Sus scrofa,9541;9823,,False,True,GEO organism field,"Macaca fascicularis -Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,perturbation,luna,,CD154 (PG405) +MD3,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,226,74220,counts,um,1.0,verified,True,H&E,4.360100953366207,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9330229,,,train,sda-all,samples/GSE311717/GSM9330229,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,perturbation,luna,,CD154 (PG405) +MD3,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,226,74220,counts,um,1.0,verified,True,H&E,4.3601009533662065,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9330229,,,train,sda-all,samples/GSE311717/GSM9330229,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9330230,GSE311717,GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis;Sus scrofa,9541;9823,,False,True,GEO organism field,"Macaca fascicularis Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,disease,luna,,CD154 (PG405) +MD3,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,111,74220,counts,um,1.0,verified,True,H&E,4.257821642750977,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9330230,,,train,sda-all,samples/GSE311717/GSM9330230,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.39, ""uberon"": 0.96, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9330231,GSE311717,GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis;Sus scrofa,9541;9823,,False,True,GEO organism field,"Macaca fascicularis @@ -9277,16 +9277,16 @@ GSM9330234,GSE311717,GSE311717,Lipid-Associated Macrophage Polarization Drives C Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,disease,luna,,CD154 (PG405) + Abatacept + Tocilizumab,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,519,74220,counts,um,1.0,verified,True,H&E,4.04184106768196,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9330234,,,train,sda-all,samples/GSE311717/GSM9330234,sda-tissue-disease-2.4,"{""organ"": 0.92, ""sample_kind"": 0.78, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9330235,GSE311717,GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis;Sus scrofa,9541;9823,,False,True,GEO organism field,"Macaca fascicularis Sus scrofa",,kidney,luna,UBERON:0002113,kidney,kidney,xenograft,,,perturbation,luna,,aCD154 (5C8) + Abatacept + Tocilizumab,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,563,74220,counts,um,1.0,verified,True,H&E,4.022573615282892,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9330235,,,train,sda-all,samples/GSE311717/GSM9330235,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.36, ""uberon"": 0.98, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9331952,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0002127,inferior olivary complex,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,988,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331952,,,train,sda-all,samples/GSE311781/GSM9331952,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.31, ""life_stage"": 0.98}",disease_status;uberon,low_confidence_annotation -GSM9331953,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,996,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331953,,,train,sda-all,samples/GSE311781/GSM9331953,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.41000000000000003, ""life_stage"": 0.99}",disease_status;uberon,low_confidence_annotation -GSM9331954,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,902,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331954,,,train,sda-all,samples/GSE311781/GSM9331954,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.33, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9331955,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,1052,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331955,,,train,sda-all,samples/GSE311781/GSM9331955,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.38, ""life_stage"": 0.98}",disease_status;uberon,low_confidence_annotation -GSM9331956,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,765,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331956,,,train,sda-all,samples/GSE311781/GSM9331956,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9331957,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,903,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331957,,,train,sda-all,samples/GSE311781/GSM9331957,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.44, ""life_stage"": 0.99}",uberon,low_confidence_annotation -GSM9331958,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,832,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331958,,,train,sda-all,samples/GSE311781/GSM9331958,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.65, ""life_stage"": 1.0}",, -GSM9331961,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,840,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331961,,,train,sda-all,samples/GSE311781/GSM9331961,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.53, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation -GSM9331962,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,865,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331962,,,train,sda-all,samples/GSE311781/GSM9331962,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.55, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9331963,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,cell,827,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331963,,,train,sda-all,samples/GSE311781/GSM9331963,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.5, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation +GSM9331952,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0002127,inferior olivary complex,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,988,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331952,,,train,sda-all,samples/GSE311781/GSM9331952,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.31, ""life_stage"": 0.98}",disease_status;uberon,low_confidence_annotation +GSM9331953,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,996,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331953,,,train,sda-all,samples/GSE311781/GSM9331953,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.41000000000000003, ""life_stage"": 0.99}",disease_status;uberon,low_confidence_annotation +GSM9331954,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,902,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331954,,,train,sda-all,samples/GSE311781/GSM9331954,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.33, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9331955,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,normal,luna,,Saline injection in the caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,1052,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331955,,,train,sda-all,samples/GSE311781/GSM9331955,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.38, ""life_stage"": 0.98}",disease_status;uberon,low_confidence_annotation +GSM9331956,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,765,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331956,,,train,sda-all,samples/GSE311781/GSM9331956,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9331957,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,903,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331957,,,train,sda-all,samples/GSE311781/GSM9331957,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.44, ""life_stage"": 0.99}",uberon,low_confidence_annotation +GSM9331958,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,832,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331958,,,train,sda-all,samples/GSE311781/GSM9331958,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.65, ""life_stage"": 1.0}",, +GSM9331961,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,840,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331961,,,train,sda-all,samples/GSE311781/GSM9331961,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.53, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation +GSM9331962,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,865,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331962,,,train,sda-all,samples/GSE311781/GSM9331962,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.55, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9331963,GSE311781,GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,brain,luna,UBERON:0007416,cerebellar peduncle,Caudal cerebellar preduncle (ccp) and Inferior Olive,primary tissue,,,disease,luna,,lesion at caudal cerebellar peduncle (ccp),adult,age rule: age with unit,adult,9-12 week old,female,Female,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,cell,827,34034,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42020752,,GSM9331963,,,train,sda-all,samples/GSE311781/GSM9331963,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.5, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9331988,GSE311783+GSE311789,GSE311783,DeCAF redefines fibroblast states uncovering multidimensional tumor-stroma relationships driving clinical tumor progression and immunotherapy response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,288,18085,counts,pixel,3.0476066595333484,platform_constant,True,H&E,3.0476066595333484,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41707654,,GSM9331988,,,train,hesrt,samples/GSE311783/GSM9331988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9331989,GSE311783+GSE311789,GSE311783,DeCAF redefines fibroblast states uncovering multidimensional tumor-stroma relationships driving clinical tumor progression and immunotherapy response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1268,18085,counts,pixel,4.0078764943144485,platform_constant,True,H&E,4.0078764943144485,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41707654,,GSM9331989,,,train,hesrt,samples/GSE311783/GSM9331989,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9331990,GSE311783+GSE311789,GSE311783,DeCAF redefines fibroblast states uncovering multidimensional tumor-stroma relationships driving clinical tumor progression and immunotherapy response [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Primary PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,pancreatic ductal adenocarcinoma,FOLFIRINOX,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,924,18085,counts,pixel,4.009138974147024,platform_constant,True,H&E,4.009138974147024,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41707654,,GSM9331990,,,train,hesrt,samples/GSE311783/GSM9331990,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -9344,14 +9344,14 @@ GSM9336966,GSE312053,GSE312053,Bridge to transplant using a flow-adaptive extrac GSM9338171,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc1,SSc1,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1082,37082,counts,pixel,4.524676684126069,platform_constant,True,H&E,4.524676684126069,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338171,,,train,hesrt,samples/GSE312129/GSM9338171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.34, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338172,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc2,SSc2,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1016,37082,counts,pixel,3.7725347806420624,platform_constant,True,H&E,3.7725347806420624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338172,,,train,hesrt,samples/GSE312129/GSM9338172,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338173,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc3,SSc3,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,581,37082,counts,pixel,5.669671451015597,platform_constant,True,H&E,5.669671451015597,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338173,,,train,hesrt,samples/GSE312129/GSM9338173,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9338174,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc4,SSc4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,628,37082,counts,pixel,1.94605071943636,platform_constant,True,H&E,1.94605071943636,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338174,,,train,hesrt,samples/GSE312129/GSM9338174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9338174,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc4,SSc4,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,628,37082,counts,pixel,1.9460507194363599,platform_constant,True,H&E,1.9460507194363599,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338174,,,train,hesrt,samples/GSE312129/GSM9338174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338175,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc5,SSc5,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1228,37082,counts,pixel,5.7847743574767785,platform_constant,True,H&E,5.7847743574767785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338175,,,train,hesrt,samples/GSE312129/GSM9338175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338176,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc6,SSc6,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,931,37082,counts,pixel,2.4761107424653304,platform_constant,True,H&E,2.4761107424653304,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338176,,,train,hesrt,samples/GSE312129/GSM9338176,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338177,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc7,SSc7,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1294,37082,counts,pixel,4.078824596312873,platform_constant,True,H&E,4.078824596312873,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338177,,,train,hesrt,samples/GSE312129/GSM9338177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338178,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc8,SSc8,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,783,37082,counts,pixel,2.012532061730178,platform_constant,True,H&E,2.012532061730178,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338178,,,train,hesrt,samples/GSE312129/GSM9338178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.49, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9338179,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc9,SSc9,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1850,37082,counts,pixel,3.269655478689401,platform_constant,True,H&E,3.269655478689401,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338179,,,train,hesrt,samples/GSE312129/GSM9338179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9338180,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc10,SSc10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,824,37082,counts,pixel,2.262223069549857,platform_constant,True,H&E,2.262223069549857,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338180,,,train,hesrt,samples/GSE312129/GSM9338180,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9339560,GSE312168,GSE312168,Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,AZX,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4057,25199,counts,pixel,4.087857517914975,platform_constant,True,H&E,4.087857517914975,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41501078,,GSM9339560,,,train,hesrt,samples/GSE312168/GSM9339560,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9338180,GSE312129,GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Whole skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,systemic sclerosis,,not stated,luna,not stated,,unknown,,GSE312129:SSc10,SSc10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,824,37082,counts,pixel,2.2622230695498575,platform_constant,True,H&E,2.2622230695498575,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41411065,,GSM9338180,,,train,hesrt,samples/GSE312129/GSM9338180,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9339560,GSE312168,GSE312168,Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,perturbation,luna,,AZX,not stated,luna,not stated,,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4057,25199,counts,pixel,4.0878575179149745,platform_constant,True,H&E,4.0878575179149745,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41501078,,GSM9339560,,,train,hesrt,samples/GSE312168/GSM9339560,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9340363,GSE312204,GSE312204,Clonal biases dictate availability of colonic cancer driver mutations for transformation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,normal colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,7269,18085,counts,pixel,7.142856785714368,platform_constant,True,H&E,7.142856785714368,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41991531,,GSM9340363,,,test,hesrt,samples/GSE312204/GSM9340363,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9340364,GSE312204,GSE312204,Clonal biases dictate availability of colonic cancer driver mutations for transformation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,normal colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,11346,18085,counts,pixel,7.284643603447287,platform_constant,True,H&E,7.284643603447287,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41991531,,GSM9340364,,,test,hesrt,samples/GSE312204/GSM9340364,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9340365,GSE312204,GSE312204,Clonal biases dictate availability of colonic cancer driver mutations for transformation,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,normal colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,9022,18085,counts,pixel,7.142856785714368,platform_constant,True,H&E,7.142856785714368,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41991531,,GSM9340365,,,test,hesrt,samples/GSE312204/GSM9340365,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -9437,38 +9437,38 @@ GSM9345456,GSE312415,GSE312415,Performance differences in spatial transcriptomic GSM9345457,GSE312415,GSE312415,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,14159,1157,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42049732,,GSM9345457,,,train,sda-all,samples/GSE312415/GSM9345457,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345458,GSE312415,GSE312415,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,19046,1204,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42049732,,GSM9345458,,,train,sda-all,samples/GSE312415/GSM9345458,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345459,GSE312415,GSE312415,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [CosMx],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,20559,1202,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42049732,,GSM9345459,,,train,sda-all,samples/GSE312415/GSM9345459,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345477,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,18573,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499990814733168,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345477,,,train,sda-all,samples/GSE312420/GSM9345477,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345477,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,18573,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999081473316803,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345477,,,train,sda-all,samples/GSE312420/GSM9345477,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345478,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,MONDO:0005020;MONDO:0005046,intestinal disorder;immune system disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,43530,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020549071181,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345478,,,train,sda-all,samples/GSE312420/GSM9345478,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9345479,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,14746,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000304383116884,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345479,,,train,sda-all,samples/GSE312420/GSM9345479,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9345480,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,39289,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000281762295081,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345480,,,train,sda-all,samples/GSE312420/GSM9345480,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345481,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37372,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999853458382179,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345481,,,train,sda-all,samples/GSE312420/GSM9345481,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345481,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37372,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998534583821796,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345481,,,train,sda-all,samples/GSE312420/GSM9345481,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345482,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,18004,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999690891605989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345482,,,train,sda-all,samples/GSE312420/GSM9345482,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345483,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,29364,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345483,,,train,sda-all,samples/GSE312420/GSM9345483,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM9345484,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005046,immune system disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,33863,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999749498997995,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345484,,,train,sda-all,samples/GSE312420/GSM9345484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9345484,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005046,immune system disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,33863,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997494989979957,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345484,,,train,sda-all,samples/GSE312420/GSM9345484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9345485,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,MONDO:0005020;MONDO:0005046,intestinal disorder;immune system disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32830,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000162069778405,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345485,,,train,sda-all,samples/GSE312420/GSM9345485,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345486,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Ileum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38405,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000154830718414,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345486,,,train,sda-all,samples/GSE312420/GSM9345486,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345487,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50568,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948524365133,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345487,,,train,sda-all,samples/GSE312420/GSM9345487,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9345488,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60961,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000232270052648,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345488,,,train,sda-all,samples/GSE312420/GSM9345488,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345489,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32860,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948373773876,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345489,,,train,sda-all,samples/GSE312420/GSM9345489,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345489,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32860,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999483737738765,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345489,,,train,sda-all,samples/GSE312420/GSM9345489,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345490,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23801,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999759747391543,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345490,,,train,sda-all,samples/GSE312420/GSM9345490,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345491,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19288,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999909737982256,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345491,,,train,sda-all,samples/GSE312420/GSM9345491,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345492,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55979,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999827839500504,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345492,,,train,sda-all,samples/GSE312420/GSM9345492,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345493,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32120,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999879807692308,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345493,,,train,sda-all,samples/GSE312420/GSM9345493,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345493,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32120,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998798076923084,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345493,,,train,sda-all,samples/GSE312420/GSM9345493,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345494,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27515,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000232270052648,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345494,,,train,sda-all,samples/GSE312420/GSM9345494,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345495,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,49481,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999827839500504,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345495,,,train,sda-all,samples/GSE312420/GSM9345495,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345496,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26216,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999421296296296,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345496,,,train,sda-all,samples/GSE312420/GSM9345496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345497,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,33821,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982827311443,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345497,,,train,sda-all,samples/GSE312420/GSM9345497,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345496,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26216,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49994212962962964,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345496,,,train,sda-all,samples/GSE312420/GSM9345496,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345497,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,33821,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999828273114433,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345497,,,train,sda-all,samples/GSE312420/GSM9345497,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345498,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28223,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999954094748439,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345498,,,train,sda-all,samples/GSE312420/GSM9345498,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9345499,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48947,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499979332010582,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345499,,,train,sda-all,samples/GSE312420/GSM9345499,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345500,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24369,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999589827727645,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345500,,,train,sda-all,samples/GSE312420/GSM9345500,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345501,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26686,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000265330188679,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345501,,,train,sda-all,samples/GSE312420/GSM9345501,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345502,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24852,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077407369181,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345502,,,train,sda-all,samples/GSE312420/GSM9345502,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9345503,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,36654,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965561575902,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345503,,,train,sda-all,samples/GSE312420/GSM9345503,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345504,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23741,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999421296296296,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345504,,,train,sda-all,samples/GSE312420/GSM9345504,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345503,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,36654,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999655615759026,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42049732,,GSM9345503,,,train,sda-all,samples/GSE312420/GSM9345503,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345504,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23741,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49994212962962964,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345504,,,train,sda-all,samples/GSE312420/GSM9345504,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9345505,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37399,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345505,,,train,sda-all,samples/GSE312420/GSM9345505,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345506,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35904,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965561575902,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345506,,,train,sda-all,samples/GSE312420/GSM9345506,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9345506,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35904,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999655615759026,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345506,,,train,sda-all,samples/GSE312420/GSM9345506,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.48, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9345507,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,39937,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000149192067572,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345507,,,train,sda-all,samples/GSE312420/GSM9345507,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9345508,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34047,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999879807692308,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345508,,,train,sda-all,samples/GSE312420/GSM9345508,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9345508,GSE312420,GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin-fixed, paraffin-embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34047,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998798076923084,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42049732,,GSM9345508,,,train,sda-all,samples/GSE312420/GSM9345508,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9347312,GSE312493,GSE312493,early neurogenic inflammation requires stepwise DC aggregation for optimal induction of immune response,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skin,luna,UBERON:0001068,skin of back,back skin,primary tissue,,,perturbation,luna,,compoun 48/80 (2-step control),not stated,luna,not stated,,unknown,,GSE312493:mouse 1,mouse 1,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,9742,5003,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42580342,,GSM9347312,,,test,sda-all,samples/GSE312493/GSM9347312,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9347313,GSE312493,GSE312493,early neurogenic inflammation requires stepwise DC aggregation for optimal induction of immune response,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skin,luna,UBERON:0001068,skin of back,back skin,primary tissue,,,normal,luna,,untreated (UT),not stated,luna,not stated,,unknown,,GSE312493:mouse 2,mouse 2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,21135,5003,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42580342,,GSM9347313,,,test,sda-all,samples/GSE312493/GSM9347313,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9347314,GSE312493,GSE312493,early neurogenic inflammation requires stepwise DC aggregation for optimal induction of immune response,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,skin,luna,UBERON:0001068,skin of back,back skin,primary tissue,,,perturbation,luna,,compound 48/80 + capsaicin (2-step activation),not stated,luna,not stated,,unknown,,GSE312493:mouse 4,mouse 4,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,12543,5003,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42580342,,GSM9347314,,,test,sda-all,samples/GSE312493/GSM9347314,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9491,28 +9491,28 @@ GSM9351704,GSE312698,GSE312698,NanoString CosMx SMI (human) on ten human MASLD s GSM9351705,GSE312698,GSE312698,NanoString CosMx SMI (human) on ten human MASLD samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0013209,metabolic dysfunction-associated steatotic liver disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,70886,1176,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42151416,,GSM9351705,,,train,sda-all,samples/GSE312698/GSM9351705,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9351706,GSE312698,GSE312698,NanoString CosMx SMI (human) on ten human MASLD samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0013209,metabolic dysfunction-associated steatotic liver disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,35537,1176,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42151416,,GSM9351706,,,train,sda-all,samples/GSE312698/GSM9351706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9351707,GSE312698,GSE312698,NanoString CosMx SMI (human) on ten human MASLD samples,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0013209,metabolic dysfunction-associated steatotic liver disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,40313,1176,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42151416,,GSM9351707,,,train,sda-all,samples/GSE312698/GSM9351707,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356905,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,962,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.4999993440721683,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356905,,,train,hesrt,samples/GSE312910/GSM9356905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356906,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1157,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.4999863080122431,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356906,,,train,hesrt,samples/GSE312910/GSM9356906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356905,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,962,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.49999934407216834,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356905,,,train,hesrt,samples/GSE312910/GSM9356905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356906,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1157,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.4999863080122431,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356906,,,train,hesrt,samples/GSE312910/GSM9356906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9356907,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1098,32285,counts,pixel,0.4907033630543836,platform_constant,True,H&E,0.5000085081408399,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356907,,,train,hesrt,samples/GSE312910/GSM9356907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9356908,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1429,32285,counts,pixel,0.4907033630543836,platform_constant,True,H&E,0.5000008356462918,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356908,,,train,hesrt,samples/GSE312910/GSM9356908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356909,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,900,32285,counts,pixel,0.4901960784313725,platform_constant,True,H&E,0.5000065802146106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356909,,,train,hesrt,samples/GSE312910/GSM9356909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356910,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1196,32285,counts,pixel,0.4901960784313725,platform_constant,True,H&E,0.4999865161636023,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356910,,,train,hesrt,samples/GSE312910/GSM9356910,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356911,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,987,32285,counts,pixel,0.4901960784313725,platform_constant,True,H&E,0.4999950385012304,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356911,,,train,hesrt,samples/GSE312910/GSM9356911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356912,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1394,32285,counts,pixel,0.4901960784313725,platform_constant,True,H&E,0.4999873076658072,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356912,,,train,hesrt,samples/GSE312910/GSM9356912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356913,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,975,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.4999903797727705,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356913,,,train,hesrt,samples/GSE312910/GSM9356913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356914,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1241,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.5000120069115641,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356914,,,train,hesrt,samples/GSE312910/GSM9356914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356909,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,900,32285,counts,pixel,0.49019607843137253,platform_constant,True,H&E,0.5000065802146106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356909,,,train,hesrt,samples/GSE312910/GSM9356909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356910,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1196,32285,counts,pixel,0.49019607843137253,platform_constant,True,H&E,0.49998651616360235,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356910,,,train,hesrt,samples/GSE312910/GSM9356910,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356911,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,987,32285,counts,pixel,0.49019607843137253,platform_constant,True,H&E,0.49999503850123045,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356911,,,train,hesrt,samples/GSE312910/GSM9356911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356912,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1394,32285,counts,pixel,0.49019607843137253,platform_constant,True,H&E,0.4999873076658072,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356912,,,train,hesrt,samples/GSE312910/GSM9356912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356913,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,975,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.4999903797727705,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356913,,,train,hesrt,samples/GSE312910/GSM9356913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356914,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1241,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.5000120069115641,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356914,,,train,hesrt,samples/GSE312910/GSM9356914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9356915,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,968,32285,counts,pixel,0.4907033630543836,platform_constant,True,H&E,0.4999914083336366,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356915,,,train,hesrt,samples/GSE312910/GSM9356915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356916,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1426,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.5000129052963515,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356916,,,train,hesrt,samples/GSE312910/GSM9356916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356917,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1010,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.5000131401251899,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356917,,,train,hesrt,samples/GSE312910/GSM9356917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356916,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1426,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.5000129052963515,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356916,,,train,hesrt,samples/GSE312910/GSM9356916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.27, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356917,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1010,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.5000131401251899,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356917,,,train,hesrt,samples/GSE312910/GSM9356917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9356918,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1273,32285,counts,pixel,0.4907033630543836,platform_constant,True,H&E,0.5000041011184725,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356918,,,train,hesrt,samples/GSE312910/GSM9356918,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.15, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356919,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1127,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.4999976596837136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356919,,,train,hesrt,samples/GSE312910/GSM9356919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9356920,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,disease,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1551,32285,counts,pixel,0.492604860565991,platform_constant,True,H&E,0.5000019672173606,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356920,,,train,hesrt,samples/GSE312910/GSM9356920,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356919,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Lumbar spinal cord,primary tissue,,,perturbation,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1127,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.4999976596837136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356919,,,train,hesrt,samples/GSE312910/GSM9356919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9356920,GSE312910,GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0003038,thoracic spinal cord,Thoracic spinal cord,primary tissue,,,disease,luna,,uninjured/3/7/28 days post injury,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1551,32285,counts,pixel,0.49260486056599107,platform_constant,True,H&E,0.5000019672173606,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41407858,,GSM9356920,,,train,hesrt,samples/GSE312910/GSM9356920,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9357155,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,11788,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896562100354,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357155,,,train,sda-all,samples/GSE312932/GSM9357155,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9357156,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,13706,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000196313440238,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357156,,,train,sda-all,samples/GSE312932/GSM9357156,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9357157,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,14700,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999907001735967,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357157,,,train,sda-all,samples/GSE312932/GSM9357157,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9357158,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,6953,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.499993830207305,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357158,,,train,sda-all,samples/GSE312932/GSM9357158,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9357157,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,14700,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999070017359676,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357157,,,train,sda-all,samples/GSE312932/GSM9357157,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9357158,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,6953,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999383020730503,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357158,,,train,sda-all,samples/GSE312932/GSM9357158,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9357159,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,10967,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999793577981651,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357159,,,train,sda-all,samples/GSE312932/GSM9357159,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9357160,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,9956,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999742090784043,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41411065,,GSM9357160,,,train,sda-all,samples/GSE312932/GSM9357160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9357160,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,9956,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997420907840434,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41411065,,GSM9357160,,,train,sda-all,samples/GSE312932/GSM9357160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9357161,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,16147,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999885247406591,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41411065,,GSM9357161,,,train,sda-all,samples/GSE312932/GSM9357161,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9357162,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,6431,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000359269143912,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357162,,,train,sda-all,samples/GSE312932/GSM9357162,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9357163,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0005100,systemic sclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hSkin_100g,xenium-3.0.0.15,cell,15011,9392,counts,um,1.0,verified,True,fluorescence: DAPI,0.50001953125,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41411065,,GSM9357163,,,train,sda-all,samples/GSE312932/GSM9357163,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -9520,19 +9520,19 @@ GSM9357164,GSE312932,GSE312932,"Spatial analyses of early, untreated SSc skin id GSM9358871,GSE313006,GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,COPD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,261504,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999911863211704,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41578022;42395348,,GSM9358871,,,train,sda-all,samples/GSE313006/GSM9358871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9358872,GSE313006,GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,COPD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,316562,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000019324916258,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41578022;42395348,,GSM9358872,,,train,sda-all,samples/GSE313006/GSM9358872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9358873,GSE313006,GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,COPD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,269706,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999889777202986,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41578022;42395348,,GSM9358873,,,train,sda-all,samples/GSE313006/GSM9358873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9358874,GSE313006,GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,COPD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219246,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999903925336261,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41578022;42395348,,GSM9358874,,,train,sda-all,samples/GSE313006/GSM9358874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9358874,GSE313006,GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,COPD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219246,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999039253362615,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41578022;42395348,,GSM9358874,,,train,sda-all,samples/GSE313006/GSM9358874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9360613,GSE313081,GSE313081,The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,metastasis,MONDO:0021117;MONDO:0004992;MONDO:0005105,lung neoplasm;cancer;melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mLung_300g,xenium-3.2.0.7,cell,426641,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499998850521863,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9360613,,,train,sda-all,samples/GSE313081/GSM9360613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9360614,GSE313081,GSE313081,The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,metastasis,MONDO:0021117;MONDO:0004992;MONDO:0005105,lung neoplasm;cancer;melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mLung_300g,xenium-3.2.0.7,cell,517413,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982760205957,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9360614,,,train,sda-all,samples/GSE313081/GSM9360614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.61, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9360615,GSE313081,GSE313081,The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0021117;MONDO:0004970,lung neoplasm;adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mLung_100g,xenium-3.0.0.15,cell,876258,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000021781746896,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9360615,,,train,sda-all,samples/GSE313081/GSM9360615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9360616,GSE313081,GSE313081,The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0021117;MONDO:0004970,lung neoplasm;adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mLung_100g,xenium-3.0.0.15,cell,678432,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999956440301433,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9360616,,,train,sda-all,samples/GSE313081/GSM9360616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9366444,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6072,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366444,,,train,sda-all,samples/GSE313338/GSM9366444,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.56, ""life_stage"": 0.58}",uberon;life_stage,low_confidence_annotation GSM9366445,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10349,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999879526366515,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366445,,,train,sda-all,samples/GSE313338/GSM9366445,sda-tissue-disease-2.4,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.81, ""life_stage"": 0.56}",life_stage,low_confidence_annotation -GSM9366446,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,13102,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499975,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366446,,,train,sda-all,samples/GSE313338/GSM9366446,sda-tissue-disease-2.4,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.78, ""life_stage"": 0.93}",, +GSM9366446,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,13102,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997500000000006,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366446,,,train,sda-all,samples/GSE313338/GSM9366446,sda-tissue-disease-2.4,"{""organ"": 0.9, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.78, ""life_stage"": 0.93}",, GSM9366447,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7375,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000255990169977,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366447,,,train,sda-all,samples/GSE313338/GSM9366447,sda-tissue-disease-2.4,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.81, ""life_stage"": 0.77}",, -GSM9366448,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7703,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999761969532099,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366448,,,train,sda-all,samples/GSE313338/GSM9366448,sda-tissue-disease-2.4,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.79, ""life_stage"": 0.71}",, +GSM9366448,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7703,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997619695320994,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366448,,,train,sda-all,samples/GSE313338/GSM9366448,sda-tissue-disease-2.4,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.79, ""life_stage"": 0.71}",, GSM9366449,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,14 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,36333,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500002876472754,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366449,,,train,sda-all,samples/GSE313338/GSM9366449,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.58, ""life_stage"": 0.63}",uberon,low_confidence_annotation -GSM9366450,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1951,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999835418038182,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366450,,,train,sda-all,samples/GSE313338/GSM9366450,sda-tissue-disease-2.4,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.77, ""life_stage"": 0.78}",, -GSM9366451,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,2125,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499965921483097,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366451,,,train,sda-all,samples/GSE313338/GSM9366451,sda-tissue-disease-2.4,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.73, ""life_stage"": 0.92}",, +GSM9366450,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1951,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998354180381827,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366450,,,train,sda-all,samples/GSE313338/GSM9366450,sda-tissue-disease-2.4,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.77, ""life_stage"": 0.78}",, +GSM9366451,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,2125,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996592148309704,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366451,,,train,sda-all,samples/GSE313338/GSM9366451,sda-tissue-disease-2.4,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.73, ""life_stage"": 0.92}",, GSM9366452,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,2170,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000408719346049,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366452,,,train,sda-all,samples/GSE313338/GSM9366452,sda-tissue-disease-2.4,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.5700000000000001, ""life_stage"": 0.8}",uberon,low_confidence_annotation GSM9366453,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,2290,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000578703703704,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366453,,,train,sda-all,samples/GSE313338/GSM9366453,sda-tissue-disease-2.4,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.87, ""life_stage"": 0.88}",, GSM9366454,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,7 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1742,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948644207067,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366454,,,train,sda-all,samples/GSE313338/GSM9366454,sda-tissue-disease-2.4,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.77, ""life_stage"": 0.89}",, @@ -9543,11 +9543,11 @@ GSM9366458,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embry GSM9366459,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,10 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38930,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366459,,,train,sda-all,samples/GSE313338/GSM9366459,sda-tissue-disease-2.4,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.72, ""life_stage"": 0.81}",, GSM9366460,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,10 dpa,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,25364,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999840357598978,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366460,,,train,sda-all,samples/GSE313338/GSM9366460,sda-tissue-disease-2.4,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.87, ""life_stage"": 0.89}",, GSM9366461,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,mature,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6240,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000370919881306,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366461,,,train,sda-all,samples/GSE313338/GSM9366461,sda-tissue-disease-2.4,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.55, ""life_stage"": 0.56}",uberon;life_stage,low_confidence_annotation -GSM9366462,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,mature,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11342,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845504171387,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366462,,,train,sda-all,samples/GSE313338/GSM9366462,sda-tissue-disease-2.4,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.77, ""life_stage"": 0.48}",life_stage,low_confidence_annotation +GSM9366462,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,mature,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11342,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998455041713874,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366462,,,train,sda-all,samples/GSE313338/GSM9366462,sda-tissue-disease-2.4,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.77, ""life_stage"": 0.48}",life_stage,low_confidence_annotation GSM9366463,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,mature,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10770,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000029373751615,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366463,,,train,sda-all,samples/GSE313338/GSM9366463,sda-tissue-disease-2.4,"{""organ"": 0.88, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.55, ""life_stage"": 0.59}",uberon;life_stage,low_confidence_annotation GSM9366464,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,mature,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6880,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214876,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366464,,,train,sda-all,samples/GSE313338/GSM9366464,sda-tissue-disease-2.4,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.59, ""life_stage"": 0.51}",uberon;life_stage,low_confidence_annotation GSM9366465,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,skeletal muscle,luna,UBERON:0003082,myotome,Tail 5 myotome post amputation,primary tissue,,,perturbation,luna,,mature,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,46943,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999926843542723,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9366465,,,train,sda-all,samples/GSE313338/GSM9366465,sda-tissue-disease-2.4,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.78, ""life_stage"": 0.5}",life_stage,low_confidence_annotation -GSM9366466,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,embryo (whole),luna,UBERON:0000922,embryo,whole_embryo,whole embryo/organism,,,normal,luna,,embryo,embryonic,luna,embryonic,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,3114,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499987821512081,VERIFIED,ABSENT,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9366466,,,train,sda-all,samples/GSE313338/GSM9366466,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.43, ""uberon"": 0.45, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation +GSM9366466,GSE313338,GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",Ambystoma mexicanum,8296,axolotl,Ambystoma mexicanum,8296,,False,False,GEO organism field,Ambystoma mexicanum,,embryo (whole),luna,UBERON:0000922,embryo,whole_embryo,whole embryo/organism,,,normal,luna,,embryo,embryonic,luna,embryonic,,unknown,,,,fresh frozen,fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,3114,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998782151208104,VERIFIED,ABSENT,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,,,GSM9366466,,,train,sda-all,samples/GSE313338/GSM9366466,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.43, ""uberon"": 0.45, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9366858,GSE313353,GSE313353,Intestinal BMP SMADs impart the mid-villus pattern via direct targeting of villus zonation genes and by controlling a transcription factor hierarchy [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,small intestine,luna,UBERON:0002115,jejunum,Jejunum of small intestine,primary tissue,,,perturbation,luna,,tamoxifen,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,300700,19059,counts,um,1.0,verified,True,H&E-like (heuristic),4.322969879576025,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9366858,,,train,sda-all,samples/GSE313353/GSM9366858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9367517,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_None_7DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:149,149,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2939,32285,counts,pixel,4.143864679945749,platform_constant,True,H&E,4.143864679945749,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367517,,,train,hesrt,samples/GSE313407/GSM9367517,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9367518,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_None_7DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:147,147,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3027,32285,counts,pixel,4.142214835346103,platform_constant,True,H&E,4.142214835346103,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367518,,,train,hesrt,samples/GSE313407/GSM9367518,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, @@ -9561,7 +9561,7 @@ GSM9367525,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spa GSM9367526,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_None_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:181,181,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2294,32285,counts,pixel,4.16681401389106,platform_constant,True,H&E,4.16681401389106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367526,,,train,hesrt,samples/GSE313407/GSM9367526,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9367527,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_None_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:176,176,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2514,32285,counts,pixel,4.325936731858362,platform_constant,True,H&E,4.325936731858362,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367527,,,train,hesrt,samples/GSE313407/GSM9367527,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.86}",, GSM9367528,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Sham_None_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:182,182,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2602,32285,counts,pixel,4.167536048583823,platform_constant,True,H&E,4.167536048583823,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367528,,,train,hesrt,samples/GSE313407/GSM9367528,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9367529,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Sham_None_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:183,183,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2345,32285,counts,pixel,4.167093506470208,platform_constant,True,H&E,4.167093506470208,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367529,,,train,hesrt,samples/GSE313407/GSM9367529,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9367529,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,Sham_None_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:183,183,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2345,32285,counts,pixel,4.1670935064702075,platform_constant,True,H&E,4.1670935064702075,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367529,,,train,hesrt,samples/GSE313407/GSM9367529,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9367530,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_GR_7DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:223,223,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2732,32285,counts,pixel,4.325936731858362,platform_constant,True,H&E,4.325936731858362,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367530,,,train,hesrt,samples/GSE313407/GSM9367530,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 0.89}",, GSM9367531,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_GR_7DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:224,224,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2620,32285,counts,pixel,4.328318715824808,platform_constant,True,H&E,4.328318715824808,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367531,,,train,hesrt,samples/GSE313407/GSM9367531,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.93}",, GSM9367532,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_Ctrl_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:206,206,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2858,32285,counts,pixel,4.168863257100049,platform_constant,True,H&E,4.168863257100049,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367532,,,train,hesrt,samples/GSE313407/GSM9367532,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 0.97}",, @@ -9576,7 +9576,7 @@ GSM9367540,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spa GSM9367541,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_GR_7DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:239,239,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2459,32285,counts,pixel,4.167536048583823,platform_constant,True,H&E,4.167536048583823,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367541,,,train,hesrt,samples/GSE313407/GSM9367541,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 0.9500000000000001}",, GSM9367542,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_Ctrl_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:248,248,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2706,32285,counts,pixel,4.169469038035548,platform_constant,True,H&E,4.169469038035548,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367542,,,train,hesrt,samples/GSE313407/GSM9367542,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, GSM9367543,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_Ctrl_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:249,249,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2750,32285,counts,pixel,4.167978488390885,platform_constant,True,H&E,4.167978488390885,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367543,,,train,hesrt,samples/GSE313407/GSM9367543,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.97, ""life_stage"": 0.99}",, -GSM9367544,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_Ctrl_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:247,247,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2635,32285,counts,pixel,4.168584046847927,platform_constant,True,H&E,4.168584046847927,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367544,,,train,hesrt,samples/GSE313407/GSM9367544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.97, ""life_stage"": 0.97}",, +GSM9367544,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_Ctrl_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:247,247,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2635,32285,counts,pixel,4.1685840468479265,platform_constant,True,H&E,4.1685840468479265,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367544,,,train,hesrt,samples/GSE313407/GSM9367544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.97, ""life_stage"": 0.97}",, GSM9367545,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_GR_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:256,256,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2730,32285,counts,pixel,4.166650862145138,platform_constant,True,H&E,4.166650862145138,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367545,,,train,hesrt,samples/GSE313407/GSM9367545,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9367546,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_GR_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:263,263,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2660,32285,counts,pixel,4.323451329292707,platform_constant,True,H&E,4.323451329292707,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367546,,,train,hesrt,samples/GSE313407/GSM9367546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9367547,GSE313407,GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,disease,luna,CCI,CCI_GR_2DPI,adult,age rule: age with unit,not stated,15–20 weeks,unknown,,GSE313407:264,264,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2717,32285,counts,pixel,4.323893885128808,platform_constant,True,H&E,4.323893885128808,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41250842,10.1177/08977151251390528,GSM9367547,,,train,hesrt,samples/GSE313407/GSM9367547,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -9604,7 +9604,7 @@ GSM9369738,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human prim GSM9369739,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1777,22000,counts,um,1.0,verified,True,H&E,4.100155321459233,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369739,,,train,sda-all,samples/GSE313530/GSM9369739,sda-tissue-disease-2.4,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9369740,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2171,22000,counts,um,1.0,verified,True,H&E,4.08535352945828,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369740,,,train,sda-all,samples/GSE313530/GSM9369740,sda-tissue-disease-2.4,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9369741,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,female,Female,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2092,22000,counts,um,1.0,verified,True,H&E,4.08454301024371,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369741,,,train,sda-all,samples/GSE313530/GSM9369741,sda-tissue-disease-2.4,"{""organ"": 0.77, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9369742,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2077,22000,counts,um,1.0,verified,True,H&E,4.084960725242167,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369742,,,train,sda-all,samples/GSE313530/GSM9369742,sda-tissue-disease-2.4,"{""organ"": 0.88, ""sample_kind"": 0.99, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9369742,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2077,22000,counts,um,1.0,verified,True,H&E,4.0849607252421665,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369742,,,train,sda-all,samples/GSE313530/GSM9369742,sda-tissue-disease-2.4,"{""organ"": 0.88, ""sample_kind"": 0.99, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9369743,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,Male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,895,22000,counts,um,1.0,verified,True,H&E,4.084327046602387,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369743,,,train,sda-all,samples/GSE313530/GSM9369743,sda-tissue-disease-2.4,"{""organ"": 0.85, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9369744,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Papio anubis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,not stated,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2258,20842,counts,um,1.0,verified,True,H&E,4.066693913351573,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369744,,,train,sda-all,samples/GSE313530/GSM9369744,sda-tissue-disease-2.4,"{""organ"": 0.77, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,feature_species_differs;low_confidence_annotation GSM9369745,GSE313530,GSE313530,Spatial transcriptomics dataset of non-human primates,Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Papio anubis,peripheral nerve,luna,UBERON:0000044,dorsal root ganglion,dorsal root ganglia,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3119,20842,counts,um,1.0,verified,True,H&E,4.066194509313726,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42146464,,GSM9369745,,,train,sda-all,samples/GSE313530/GSM9369745,sda-tissue-disease-2.4,"{""organ"": 0.88, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,feature_species_differs;low_confidence_annotation @@ -9621,9 +9621,9 @@ GSM9372004,GSE313662,GSE313662,Neoadjuvant modified FOLFIRINOX plus nivolumab in GSM9372005,GSE313662,GSE313662,Neoadjuvant modified FOLFIRINOX plus nivolumab in borderline-resectable pancreatic ductal adenocarcinoma: a pilot phase 1 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic adenocarcinoma,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic adenocarcinoma,Neoadjuvant treatment with FOLFIRINOX and nivolumab,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_100g,xenium-3.0.0.15,cell,238408,9656,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000011492139377,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41620440,,GSM9372005,,,train,sda-all,samples/GSE313662/GSM9372005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9372006,GSE313662,GSE313662,Neoadjuvant modified FOLFIRINOX plus nivolumab in borderline-resectable pancreatic ductal adenocarcinoma: a pilot phase 1 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,Pancreatic adenocarcinoma,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,Pancreatic adenocarcinoma,Neoadjuvant treatment with FOLFIRINOX and nivolumab,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,hPancreas_100g,xenium-3.0.0.15,cell,159670,9656,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000048671274214,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41620440,,GSM9372006,,,train,sda-all,samples/GSE313662/GSM9372006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9372543,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3698,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.175395199567525,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372543,,,train,sda-all,samples/GSE313694/GSM9372543,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9372544,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3054,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.219232362851487,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372544,,,train,sda-all,samples/GSE313694/GSM9372544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9372544,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3054,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.2192323628514865,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372544,,,train,sda-all,samples/GSE313694/GSM9372544,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372545,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2302,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.040612423173297,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372545,,,train,sda-all,samples/GSE313694/GSM9372545,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9372546,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3493,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.286785489946484,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372546,,,train,sda-all,samples/GSE313694/GSM9372546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9372546,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3493,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.2867854899464835,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372546,,,train,sda-all,samples/GSE313694/GSM9372546,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372547,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3985,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.157346838373332,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372547,,,train,sda-all,samples/GSE313694/GSM9372547,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372548,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4309,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.2729320208546735,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372548,,,train,sda-all,samples/GSE313694/GSM9372548,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372549,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3802,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.26400534128472,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks bluish),41663806,,GSM9372549,,,train,sda-all,samples/GSE313694/GSM9372549,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -9642,13 +9642,13 @@ GSM9372561,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meni GSM9372562,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3751,36945,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.135570428079463,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372562,,,train,sda-all,samples/GSE313694/GSM9372562,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9372563,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11713,37082,counts,um,1.0,verified,True,H&E-like (heuristic),8.392331364970364,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372563,,,train,sda-all,samples/GSE313694/GSM9372563,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372564,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9303,37082,counts,um,1.0,verified,True,H&E-like (heuristic),8.122254313409469,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372564,,,train,sda-all,samples/GSE313694/GSM9372564,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9372565,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8458,37082,counts,um,1.0,verified,True,H&E-like (heuristic),9.798943841105364,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372565,,,train,sda-all,samples/GSE313694/GSM9372565,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9372565,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8458,37082,counts,um,1.0,verified,True,H&E-like (heuristic),9.798943841105363,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372565,,,train,sda-all,samples/GSE313694/GSM9372565,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372566,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5422,37082,counts,um,1.0,verified,True,H&E-like (heuristic),8.108547110779067,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372566,,,train,sda-all,samples/GSE313694/GSM9372566,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372567,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10195,37082,counts,um,1.0,verified,True,H&E-like (heuristic),6.191881460301188,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372567,,,train,sda-all,samples/GSE313694/GSM9372567,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9372568,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9062,37082,counts,um,1.0,verified,True,H&E-like (heuristic),6.5584263079215335,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372568,,,train,sda-all,samples/GSE313694/GSM9372568,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9372569,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8745,37082,counts,um,1.0,verified,True,H&E-like (heuristic),6.338722548571736,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372569,,,train,sda-all,samples/GSE313694/GSM9372569,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9372570,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9589,37082,counts,um,1.0,verified,True,H&E-like (heuristic),7.868280656388722,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372570,,,train,sda-all,samples/GSE313694/GSM9372570,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9372571,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10201,37082,counts,um,1.0,verified,True,H&E-like (heuristic),10.493769731502557,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),,41663806,,GSM9372571,,,train,sda-all,samples/GSE313694/GSM9372571,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9372571,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10201,37082,counts,um,1.0,verified,True,H&E-like (heuristic),10.493769731502555,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),,41663806,,GSM9372571,,,train,sda-all,samples/GSE313694/GSM9372571,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9372572,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11314,37082,counts,um,1.0,verified,True,H&E-like (heuristic),6.743186204194192,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372572,,,train,sda-all,samples/GSE313694/GSM9372572,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9372573,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9285,37082,counts,um,1.0,verified,True,H&E-like (heuristic),6.0862985251214,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372573,,,train,sda-all,samples/GSE313694/GSM9372573,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9372574,GSE313694,GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,meninges,luna,UBERON:0002360,meninx,Meningioma,tumour tissue,MONDO:0016642,meningioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,6515,37082,counts,um,1.0,verified,True,H&E-like (heuristic),6.371688870454235,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41663806,,GSM9372574,,,train,sda-all,samples/GSE313694/GSM9372574,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -9726,88 +9726,88 @@ GSM9375928,GSE313808,GSE313808,"High resolution mapping of human skin chronic wo GSM9375929,GSE313808,GSE313808,"High resolution mapping of human skin chronic wound tissues biofilm infected using integrated single-cell, spatial and in situ analysis [Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,,primary tissue,,,disease,luna,chronic wound skin,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hmxskin_470g,xenium-3.2.0.7,cell,32254,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000349162011173,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9375929,,,val,sda-all,samples/GSE313808/GSM9375929,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9376204,GSE313828,GSE313828,Spatial transcriptomics of MRGPRX4-driven melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,dorsal skin,primary tissue,MONDO:0005105,melanoma,disease,luna,,tamoxifen,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,462,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.101629401668687,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks reddish),,,GSM9376204,,,train,sda-all,samples/GSE313828/GSM9376204,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.51, ""disease_status"": 0.55, ""uberon"": 0.38, ""life_stage"": 1.0}",sample_kind;disease_status;uberon,low_confidence_annotation GSM9376205,GSE313828,GSE313828,Spatial transcriptomics of MRGPRX4-driven melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,dorsal skin,primary tissue,MONDO:0005105,melanoma,disease,luna,,tamoxifen,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,498,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.023243905026211,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks reddish),,,GSM9376205,,,train,sda-all,samples/GSE313828/GSM9376205,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.45, ""disease_status"": 0.39, ""uberon"": 0.46, ""life_stage"": 1.0}",sample_kind;disease_status;uberon,low_confidence_annotation -GSM9376206,GSE313828,GSE313828,Spatial transcriptomics of MRGPRX4-driven melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,dorsal skin,primary tissue,MONDO:0005105,melanoma,disease,mondo_predicate (Luna: perturbation),,tamoxifen,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,386,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.983145110644032,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks reddish),,,GSM9376206,,,train,sda-all,samples/GSE313828/GSM9376206,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.49, ""disease_status"": 0.35000000000000003, ""uberon"": 0.38, ""life_stage"": 1.0}",sample_kind;disease_status;uberon,low_confidence_annotation +GSM9376206,GSE313828,GSE313828,Spatial transcriptomics of MRGPRX4-driven melanoma,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,dorsal skin,primary tissue,MONDO:0005105,melanoma,disease,mondo_predicate (Luna: perturbation),,tamoxifen,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,386,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9831451106440317,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,check whether the stain is H&E (looks reddish),,,GSM9376206,,,train,sda-all,samples/GSE313828/GSM9376206,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.49, ""disease_status"": 0.35000000000000003, ""uberon"": 0.38, ""life_stage"": 1.0}",sample_kind;disease_status;uberon,low_confidence_annotation GSM9376740,GSE313858,GSE313858,Spatial transcriptomic data from longitudinal tumor samples from one patient undergoing neoadjuvant BO-112 and hypofractionated radiation therapy in soft tissue carcoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,soft tissue sarcoma,"None (baseline T1, Cohort -2, batch 1)",not stated,luna,not stated,,unknown,,GSE313858:Patient 004,Patient 004,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,7915,18085,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9376740,,,train,hesrt,samples/GSE313858/GSM9376740,sda-tissue-disease-2.3,"{""organ"": 0.76, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, GSM9376741,GSE313858,GSE313858,Spatial transcriptomic data from longitudinal tumor samples from one patient undergoing neoadjuvant BO-112 and hypofractionated radiation therapy in soft tissue carcoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,soft tissue sarcoma,"BO-112 (1 dose) (pre-RT T2, Cohort -2, batch 1)",not stated,luna,not stated,,unknown,,GSE313858:Patient 004,Patient 004,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,13427,18085,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9376741,,,train,hesrt,samples/GSE313858/GSM9376741,sda-tissue-disease-2.3,"{""organ"": 0.61, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9376742,GSE313858,GSE313858,Spatial transcriptomic data from longitudinal tumor samples from one patient undergoing neoadjuvant BO-112 and hypofractionated radiation therapy in soft tissue carcoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0005070,neoplasm,disease,luna,soft tissue sarcoma,"Radiation (6 Gy x 5), BO-112 (2 doses) (post-RT T3, Cohort -2, batch 1)",not stated,luna,not stated,,unknown,,GSE313858:Patient 004,Patient 004,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,17060,18085,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9376742,,,train,hesrt,samples/GSE313858/GSM9376742,sda-tissue-disease-2.3,"{""organ"": 0.48, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9377774,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,51,male,male,GSE313918:SD013/17,SD013/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3767,36601,counts,pixel,3.939046960370584,platform_constant,True,H&E,3.939046960370584,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377774,,,test,hesrt,samples/GSE313918/GSM9377774,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377775,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,51,male,male,GSE313918:SD013/17,SD013/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3290,36601,counts,pixel,3.925613353765105,platform_constant,True,H&E,3.925613353765105,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377775,,,test,hesrt,samples/GSE313918/GSM9377775,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377776,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,51,male,male,GSE313918:SD013/17,SD013/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3352,36601,counts,pixel,3.887646006573097,platform_constant,True,H&E,3.887646006573097,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377776,,,test,hesrt,samples/GSE313918/GSM9377776,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377776,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,51,male,male,GSE313918:SD013/17,SD013/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3352,36601,counts,pixel,3.8876460065730973,platform_constant,True,H&E,3.8876460065730973,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377776,,,test,hesrt,samples/GSE313918/GSM9377776,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377777,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,51,male,male,GSE313918:SD013/17,SD013/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3665,36601,counts,pixel,3.904023953163207,platform_constant,True,H&E,3.904023953163207,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377777,,,test,hesrt,samples/GSE313918/GSM9377777,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377778,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD016/10,SD016/10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4488,36601,counts,pixel,3.918254576071747,platform_constant,True,H&E,3.918254576071747,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377778,,,test,hesrt,samples/GSE313918/GSM9377778,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377779,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD016/10,SD016/10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4162,36601,counts,pixel,3.923509563358224,platform_constant,True,H&E,3.923509563358224,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377779,,,test,hesrt,samples/GSE313918/GSM9377779,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377779,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD016/10,SD016/10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4162,36601,counts,pixel,3.9235095633582238,platform_constant,True,H&E,3.9235095633582238,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377779,,,test,hesrt,samples/GSE313918/GSM9377779,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377780,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD016/10,SD016/10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4490,36601,counts,pixel,3.9291734325264094,platform_constant,True,H&E,3.9291734325264094,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377780,,,test,hesrt,samples/GSE313918/GSM9377780,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377781,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD016/10,SD016/10,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3996,36601,counts,pixel,3.954497043029661,platform_constant,True,H&E,3.954497043029661,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377781,,,test,hesrt,samples/GSE313918/GSM9377781,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377782,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3553,36601,counts,pixel,3.917634064650677,platform_constant,True,H&E,3.917634064650677,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377782,,,test,hesrt,samples/GSE313918/GSM9377782,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377782,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3553,36601,counts,pixel,3.9176340646506764,platform_constant,True,H&E,3.9176340646506764,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377782,,,test,hesrt,samples/GSE313918/GSM9377782,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377783,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4504,36601,counts,pixel,3.946682190711057,platform_constant,True,H&E,3.946682190711057,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377783,,,test,hesrt,samples/GSE313918/GSM9377783,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377784,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4217,36601,counts,pixel,3.948084333460404,platform_constant,True,H&E,3.948084333460404,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377784,,,test,hesrt,samples/GSE313918/GSM9377784,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377784,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4217,36601,counts,pixel,3.9480843334604043,platform_constant,True,H&E,3.9480843334604043,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377784,,,test,hesrt,samples/GSE313918/GSM9377784,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377785,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4315,36601,counts,pixel,3.9134147723990655,platform_constant,True,H&E,3.9134147723990655,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377785,,,test,hesrt,samples/GSE313918/GSM9377785,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377786,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4239,36601,counts,pixel,3.851657905598814,platform_constant,True,H&E,3.851657905598814,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377786,,,test,hesrt,samples/GSE313918/GSM9377786,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377787,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3564,36601,counts,pixel,3.853693558164793,platform_constant,True,H&E,3.853693558164793,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377787,,,test,hesrt,samples/GSE313918/GSM9377787,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377787,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3564,36601,counts,pixel,3.8536935581647933,platform_constant,True,H&E,3.8536935581647933,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377787,,,test,hesrt,samples/GSE313918/GSM9377787,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377788,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4784,36601,counts,pixel,3.86974050435398,platform_constant,True,H&E,3.86974050435398,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377788,,,test,hesrt,samples/GSE313918/GSM9377788,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377789,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4908,36601,counts,pixel,3.8725312469404702,platform_constant,True,H&E,3.8725312469404702,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377789,,,test,hesrt,samples/GSE313918/GSM9377789,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377790,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4104,36601,counts,pixel,3.8709387799914072,platform_constant,True,H&E,3.8709387799914072,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377790,,,test,hesrt,samples/GSE313918/GSM9377790,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377791,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3385,36601,counts,pixel,3.833175811459324,platform_constant,True,H&E,3.833175811459324,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377791,,,test,hesrt,samples/GSE313918/GSM9377791,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377792,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3553,36601,counts,pixel,3.852232525424234,platform_constant,True,H&E,3.852232525424234,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377792,,,test,hesrt,samples/GSE313918/GSM9377792,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377793,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4749,36601,counts,pixel,3.817412945757873,platform_constant,True,H&E,3.817412945757873,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377793,,,test,hesrt,samples/GSE313918/GSM9377793,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377792,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3553,36601,counts,pixel,3.8522325254242347,platform_constant,True,H&E,3.8522325254242347,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377792,,,test,hesrt,samples/GSE313918/GSM9377792,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377793,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4749,36601,counts,pixel,3.8174129457578725,platform_constant,True,H&E,3.8174129457578725,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377793,,,test,hesrt,samples/GSE313918/GSM9377793,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377794,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4550,36601,counts,pixel,3.8757290213577575,platform_constant,True,H&E,3.8757290213577575,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377794,,,test,hesrt,samples/GSE313918/GSM9377794,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377795,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4151,36601,counts,pixel,3.8699373307704574,platform_constant,True,H&E,3.8699373307704574,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377795,,,test,hesrt,samples/GSE313918/GSM9377795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377796,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4389,36601,counts,pixel,3.864871753131244,platform_constant,True,H&E,3.864871753131244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377796,,,test,hesrt,samples/GSE313918/GSM9377796,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377797,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4550,36601,counts,pixel,3.86612752787788,platform_constant,True,H&E,3.86612752787788,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377797,,,test,hesrt,samples/GSE313918/GSM9377797,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377798,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3615,36601,counts,pixel,3.8832818470047834,platform_constant,True,H&E,3.8832818470047834,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377798,,,test,hesrt,samples/GSE313918/GSM9377798,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377799,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3854,36601,counts,pixel,3.859950245567776,platform_constant,True,H&E,3.859950245567776,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377799,,,test,hesrt,samples/GSE313918/GSM9377799,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377800,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3754,36601,counts,pixel,3.869089775653208,platform_constant,True,H&E,3.869089775653208,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377800,,,test,hesrt,samples/GSE313918/GSM9377800,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377801,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3597,36601,counts,pixel,3.8128343739498423,platform_constant,True,H&E,3.8128343739498423,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377801,,,test,hesrt,samples/GSE313918/GSM9377801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377802,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD032/12,SD032/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4863,36601,counts,pixel,3.8711562131959294,platform_constant,True,H&E,3.8711562131959294,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377802,,,test,hesrt,samples/GSE313918/GSM9377802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377795,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4151,36601,counts,pixel,3.8699373307704583,platform_constant,True,H&E,3.8699373307704583,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377795,,,test,hesrt,samples/GSE313918/GSM9377795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377796,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4389,36601,counts,pixel,3.8648717531312435,platform_constant,True,H&E,3.8648717531312435,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377796,,,test,hesrt,samples/GSE313918/GSM9377796,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377797,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4550,36601,counts,pixel,3.8661275278778797,platform_constant,True,H&E,3.8661275278778797,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377797,,,test,hesrt,samples/GSE313918/GSM9377797,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377798,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3615,36601,counts,pixel,3.8832818470047825,platform_constant,True,H&E,3.8832818470047825,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377798,,,test,hesrt,samples/GSE313918/GSM9377798,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377799,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3854,36601,counts,pixel,3.8599502455677754,platform_constant,True,H&E,3.8599502455677754,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377799,,,test,hesrt,samples/GSE313918/GSM9377799,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377800,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3754,36601,counts,pixel,3.8690897756532077,platform_constant,True,H&E,3.8690897756532077,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377800,,,test,hesrt,samples/GSE313918/GSM9377800,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377801,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3597,36601,counts,pixel,3.8128343739498427,platform_constant,True,H&E,3.8128343739498427,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377801,,,test,hesrt,samples/GSE313918/GSM9377801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377802,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD032/12,SD032/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4863,36601,counts,pixel,3.8711562131959303,platform_constant,True,H&E,3.8711562131959303,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377802,,,test,hesrt,samples/GSE313918/GSM9377802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377803,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD032/12,SD032/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4516,36601,counts,pixel,3.854118062950984,platform_constant,True,H&E,3.854118062950984,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377803,,,test,hesrt,samples/GSE313918/GSM9377803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377804,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4862,36601,counts,pixel,3.86359713374106,platform_constant,True,H&E,3.86359713374106,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377804,,,test,hesrt,samples/GSE313918/GSM9377804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377804,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4862,36601,counts,pixel,3.8635971337410595,platform_constant,True,H&E,3.8635971337410595,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377804,,,test,hesrt,samples/GSE313918/GSM9377804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377805,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4829,36601,counts,pixel,3.8334008022939776,platform_constant,True,H&E,3.8334008022939776,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377805,,,test,hesrt,samples/GSE313918/GSM9377805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377806,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4011,36601,counts,pixel,3.8728886463724,platform_constant,True,H&E,3.8728886463724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377806,,,test,hesrt,samples/GSE313918/GSM9377806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377806,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4011,36601,counts,pixel,3.8728886463723997,platform_constant,True,H&E,3.8728886463723997,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377806,,,test,hesrt,samples/GSE313918/GSM9377806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377807,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3898,36601,counts,pixel,3.88195546903982,platform_constant,True,H&E,3.88195546903982,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377807,,,test,hesrt,samples/GSE313918/GSM9377807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377808,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,58,female,female,GSE313918:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4608,36601,counts,pixel,3.853260114116427,platform_constant,True,H&E,3.853260114116427,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377808,,,test,hesrt,samples/GSE313918/GSM9377808,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377809,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,58,female,female,GSE313918:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4513,36601,counts,pixel,3.8630444426336688,platform_constant,True,H&E,3.8630444426336688,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377809,,,test,hesrt,samples/GSE313918/GSM9377809,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377810,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4614,36601,counts,pixel,3.85495884086234,platform_constant,True,H&E,3.85495884086234,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377810,,,test,hesrt,samples/GSE313918/GSM9377810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9377810,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4614,36601,counts,pixel,3.8549588408623396,platform_constant,True,H&E,3.8549588408623396,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377810,,,test,hesrt,samples/GSE313918/GSM9377810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9377811,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4533,36601,counts,pixel,3.8647268265921846,platform_constant,True,H&E,3.8647268265921846,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377811,,,test,hesrt,samples/GSE313918/GSM9377811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377812,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4238,36601,counts,pixel,3.871460768472568,platform_constant,True,H&E,3.871460768472568,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377812,,,test,hesrt,samples/GSE313918/GSM9377812,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377813,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3557,36601,counts,pixel,3.8370920473216072,platform_constant,True,H&E,3.8370920473216072,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377813,,,test,hesrt,samples/GSE313918/GSM9377813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377814,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2382,36601,counts,pixel,3.8746843455864393,platform_constant,True,H&E,3.8746843455864393,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377814,,,test,hesrt,samples/GSE313918/GSM9377814,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377815,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3355,36601,counts,pixel,3.8696624701339912,platform_constant,True,H&E,3.8696624701339912,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377815,,,test,hesrt,samples/GSE313918/GSM9377815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377816,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4524,36601,counts,pixel,3.848355973857111,platform_constant,True,H&E,3.848355973857111,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377816,,,test,hesrt,samples/GSE313918/GSM9377816,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377816,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4524,36601,counts,pixel,3.8483559738571107,platform_constant,True,H&E,3.8483559738571107,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377816,,,test,hesrt,samples/GSE313918/GSM9377816,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377817,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4940,36601,counts,pixel,3.85157870184496,platform_constant,True,H&E,3.85157870184496,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377817,,,test,hesrt,samples/GSE313918/GSM9377817,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377818,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,76,female,female,GSE313918:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4215,36601,counts,pixel,3.8900884468687726,platform_constant,True,H&E,3.8900884468687726,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377818,,,test,hesrt,samples/GSE313918/GSM9377818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377819,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,76,female,female,GSE313918:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3995,36601,counts,pixel,3.8896245322393863,platform_constant,True,H&E,3.8896245322393863,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377819,,,test,hesrt,samples/GSE313918/GSM9377819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377820,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4906,36601,counts,pixel,3.925538414707193,platform_constant,True,H&E,3.925538414707193,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377820,,,test,hesrt,samples/GSE313918/GSM9377820,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377819,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,76,female,female,GSE313918:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3995,36601,counts,pixel,3.8896245322393868,platform_constant,True,H&E,3.8896245322393868,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377819,,,test,hesrt,samples/GSE313918/GSM9377819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377820,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4906,36601,counts,pixel,3.9255384147071926,platform_constant,True,H&E,3.9255384147071926,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377820,,,test,hesrt,samples/GSE313918/GSM9377820,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377821,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3715,36601,counts,pixel,3.868594905528229,platform_constant,True,H&E,3.868594905528229,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377821,,,test,hesrt,samples/GSE313918/GSM9377821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377822,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4822,36601,counts,pixel,3.8852786985418,platform_constant,True,H&E,3.8852786985418,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377822,,,test,hesrt,samples/GSE313918/GSM9377822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377822,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4822,36601,counts,pixel,3.8852786985418004,platform_constant,True,H&E,3.8852786985418004,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377822,,,test,hesrt,samples/GSE313918/GSM9377822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377823,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4889,36601,counts,pixel,3.850546769472652,platform_constant,True,H&E,3.850546769472652,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377823,,,test,hesrt,samples/GSE313918/GSM9377823,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377824,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4682,36601,counts,pixel,3.8630288823161,platform_constant,True,H&E,3.8630288823161,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377824,,,test,hesrt,samples/GSE313918/GSM9377824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9377825,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4248,36601,counts,pixel,3.846960759072081,platform_constant,True,H&E,3.846960759072081,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377825,,,test,hesrt,samples/GSE313918/GSM9377825,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377826,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4173,36601,counts,pixel,3.851718070741293,platform_constant,True,H&E,3.851718070741293,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377826,,,test,hesrt,samples/GSE313918/GSM9377826,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377827,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4751,36601,counts,pixel,3.836969185906685,platform_constant,True,H&E,3.836969185906685,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377827,,,test,hesrt,samples/GSE313918/GSM9377827,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377827,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4751,36601,counts,pixel,3.8369691859066846,platform_constant,True,H&E,3.8369691859066846,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377827,,,test,hesrt,samples/GSE313918/GSM9377827,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377828,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4777,36601,counts,pixel,3.850044948332677,platform_constant,True,H&E,3.850044948332677,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377828,,,test,hesrt,samples/GSE313918/GSM9377828,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377829,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4143,36601,counts,pixel,3.8545683164236975,platform_constant,True,H&E,3.8545683164236975,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377829,,,test,hesrt,samples/GSE313918/GSM9377829,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377830,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4477,36601,counts,pixel,3.845694624182645,platform_constant,True,H&E,3.845694624182645,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377830,,,test,hesrt,samples/GSE313918/GSM9377830,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377831,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4526,36601,counts,pixel,3.848867565253802,platform_constant,True,H&E,3.848867565253802,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377831,,,test,hesrt,samples/GSE313918/GSM9377831,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377831,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4526,36601,counts,pixel,3.8488675652538022,platform_constant,True,H&E,3.8488675652538022,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377831,,,test,hesrt,samples/GSE313918/GSM9377831,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377832,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4784,36601,counts,pixel,3.832905012357335,platform_constant,True,H&E,3.832905012357335,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377832,,,test,hesrt,samples/GSE313918/GSM9377832,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377833,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3441,36601,counts,pixel,3.893409838721608,platform_constant,True,H&E,3.893409838721608,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377833,,,test,hesrt,samples/GSE313918/GSM9377833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377833,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3441,36601,counts,pixel,3.8934098387216074,platform_constant,True,H&E,3.8934098387216074,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377833,,,test,hesrt,samples/GSE313918/GSM9377833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377834,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,66,female,female,GSE313918:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3306,36601,counts,pixel,3.872144455374275,platform_constant,True,H&E,3.872144455374275,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377834,,,test,hesrt,samples/GSE313918/GSM9377834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377835,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4176,36601,counts,pixel,3.879672701266336,platform_constant,True,H&E,3.879672701266336,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377835,,,test,hesrt,samples/GSE313918/GSM9377835,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377836,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4412,36601,counts,pixel,3.912477137407136,platform_constant,True,H&E,3.912477137407136,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377836,,,test,hesrt,samples/GSE313918/GSM9377836,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377835,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4176,36601,counts,pixel,3.8796727012663355,platform_constant,True,H&E,3.8796727012663355,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377835,,,test,hesrt,samples/GSE313918/GSM9377835,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377836,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4412,36601,counts,pixel,3.9124771374071354,platform_constant,True,H&E,3.9124771374071354,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377836,,,test,hesrt,samples/GSE313918/GSM9377836,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377837,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD032/12,SD032/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4607,36601,counts,pixel,3.8662136690075326,platform_constant,True,H&E,3.8662136690075326,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377837,,,test,hesrt,samples/GSE313918/GSM9377837,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377838,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD032/12,SD032/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4581,36601,counts,pixel,3.883896049961605,platform_constant,True,H&E,3.883896049961605,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377838,,,test,hesrt,samples/GSE313918/GSM9377838,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377839,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4909,36601,counts,pixel,3.8660290877746712,platform_constant,True,H&E,3.8660290877746712,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377839,,,test,hesrt,samples/GSE313918/GSM9377839,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377840,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4774,36601,counts,pixel,3.86687668169045,platform_constant,True,H&E,3.86687668169045,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377840,,,test,hesrt,samples/GSE313918/GSM9377840,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377841,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4085,36601,counts,pixel,3.8608129304370618,platform_constant,True,H&E,3.8608129304370618,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377841,,,test,hesrt,samples/GSE313918/GSM9377841,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377842,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3263,36601,counts,pixel,3.856249455409408,platform_constant,True,H&E,3.856249455409408,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377842,,,test,hesrt,samples/GSE313918/GSM9377842,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377842,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3263,36601,counts,pixel,3.8562494554094076,platform_constant,True,H&E,3.8562494554094076,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377842,,,test,hesrt,samples/GSE313918/GSM9377842,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377843,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,58,female,female,GSE313918:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4062,36601,counts,pixel,3.854341178949003,platform_constant,True,H&E,3.854341178949003,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377843,,,test,hesrt,samples/GSE313918/GSM9377843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377844,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,58,female,female,GSE313918:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4988,36601,counts,pixel,3.877974743720206,platform_constant,True,H&E,3.877974743720206,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377844,,,test,hesrt,samples/GSE313918/GSM9377844,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377845,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2571,36601,counts,pixel,3.872950780521547,platform_constant,True,H&E,3.872950780521547,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377845,,,test,hesrt,samples/GSE313918/GSM9377845,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377846,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3705,36601,counts,pixel,3.860354150607412,platform_constant,True,H&E,3.860354150607412,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377846,,,test,hesrt,samples/GSE313918/GSM9377846,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377846,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,66,male,male,GSE313918:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3705,36601,counts,pixel,3.8603541506074115,platform_constant,True,H&E,3.8603541506074115,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377846,,,test,hesrt,samples/GSE313918/GSM9377846,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377847,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4598,36601,counts,pixel,3.855167439768347,platform_constant,True,H&E,3.855167439768347,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377847,,,test,hesrt,samples/GSE313918/GSM9377847,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377848,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4532,36601,counts,pixel,3.856012157202504,platform_constant,True,H&E,3.856012157202504,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377848,,,test,hesrt,samples/GSE313918/GSM9377848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377848,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD033/15,SD033/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4532,36601,counts,pixel,3.8560121572025037,platform_constant,True,H&E,3.8560121572025037,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377848,,,test,hesrt,samples/GSE313918/GSM9377848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377849,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3583,36601,counts,pixel,3.856840619937172,platform_constant,True,H&E,3.856840619937172,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377849,,,test,hesrt,samples/GSE313918/GSM9377849,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377850,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD032/16,SD032/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3507,36601,counts,pixel,3.864762328050569,platform_constant,True,H&E,3.864762328050569,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377850,,,test,hesrt,samples/GSE313918/GSM9377850,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377851,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3134,36601,counts,pixel,3.85689741674884,platform_constant,True,H&E,3.85689741674884,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377851,,,test,hesrt,samples/GSE313918/GSM9377851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377851,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3134,36601,counts,pixel,3.8568974167488403,platform_constant,True,H&E,3.8568974167488403,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377851,,,test,hesrt,samples/GSE313918/GSM9377851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377852,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,48,female,female,GSE313918:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3189,36601,counts,pixel,3.872138738716417,platform_constant,True,H&E,3.872138738716417,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377852,,,test,hesrt,samples/GSE313918/GSM9377852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377853,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4931,36601,counts,pixel,3.850450717264517,platform_constant,True,H&E,3.850450717264517,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377853,,,test,hesrt,samples/GSE313918/GSM9377853,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377854,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,63,male,male,GSE313918:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4299,36601,counts,pixel,3.838408716194233,platform_constant,True,H&E,3.838408716194233,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377854,,,test,hesrt,samples/GSE313918/GSM9377854,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9815,21 +9815,21 @@ GSM9377855,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underl GSM9377856,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3065,36601,counts,pixel,3.859243372928389,platform_constant,True,H&E,3.859243372928389,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377856,,,test,hesrt,samples/GSE313918/GSM9377856,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377857,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4260,36601,counts,pixel,3.853591057178849,platform_constant,True,H&E,3.853591057178849,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377857,,,test,hesrt,samples/GSE313918/GSM9377857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377858,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,50,female,female,GSE313918:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3841,36601,counts,pixel,3.845456521314276,platform_constant,True,H&E,3.845456521314276,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377858,,,test,hesrt,samples/GSE313918/GSM9377858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377859,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4378,36601,counts,pixel,3.849536235141564,platform_constant,True,H&E,3.849536235141564,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377859,,,test,hesrt,samples/GSE313918/GSM9377859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377860,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4649,36601,counts,pixel,3.850231600924295,platform_constant,True,H&E,3.850231600924295,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377860,,,test,hesrt,samples/GSE313918/GSM9377860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377861,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3794,36601,counts,pixel,3.842344127276936,platform_constant,True,H&E,3.842344127276936,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377861,,,test,hesrt,samples/GSE313918/GSM9377861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377859,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4378,36601,counts,pixel,3.8495362351415636,platform_constant,True,H&E,3.8495362351415636,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377859,,,test,hesrt,samples/GSE313918/GSM9377859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377860,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4649,36601,counts,pixel,3.8502316009242947,platform_constant,True,H&E,3.8502316009242947,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377860,,,test,hesrt,samples/GSE313918/GSM9377860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377861,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3794,36601,counts,pixel,3.8423441272769363,platform_constant,True,H&E,3.8423441272769363,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377861,,,test,hesrt,samples/GSE313918/GSM9377861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377862,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3601,36601,counts,pixel,3.85433930820267,platform_constant,True,H&E,3.85433930820267,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377862,,,test,hesrt,samples/GSE313918/GSM9377862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377863,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4832,36601,counts,pixel,3.829544378602588,platform_constant,True,H&E,3.829544378602588,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377863,,,test,hesrt,samples/GSE313918/GSM9377863,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377864,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3655,36601,counts,pixel,3.84302037768617,platform_constant,True,H&E,3.84302037768617,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377864,,,test,hesrt,samples/GSE313918/GSM9377864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377865,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4910,36601,counts,pixel,3.839759391701174,platform_constant,True,H&E,3.839759391701174,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377865,,,test,hesrt,samples/GSE313918/GSM9377865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377866,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4929,36601,counts,pixel,3.841775249170965,platform_constant,True,H&E,3.841775249170965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377866,,,test,hesrt,samples/GSE313918/GSM9377866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377867,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4566,36601,counts,pixel,3.814020512957848,platform_constant,True,H&E,3.814020512957848,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377867,,,test,hesrt,samples/GSE313918/GSM9377867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377866,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4929,36601,counts,pixel,3.8417752491709654,platform_constant,True,H&E,3.8417752491709654,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377866,,,test,hesrt,samples/GSE313918/GSM9377866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377867,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4566,36601,counts,pixel,3.8140205129578475,platform_constant,True,H&E,3.8140205129578475,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377867,,,test,hesrt,samples/GSE313918/GSM9377867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377868,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3328,36601,counts,pixel,3.802257473915326,platform_constant,True,H&E,3.802257473915326,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377868,,,test,hesrt,samples/GSE313918/GSM9377868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377869,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4759,36601,counts,pixel,3.8236996005548822,platform_constant,True,H&E,3.8236996005548822,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377869,,,test,hesrt,samples/GSE313918/GSM9377869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377869,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4759,36601,counts,pixel,3.8236996005548827,platform_constant,True,H&E,3.8236996005548827,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377869,,,test,hesrt,samples/GSE313918/GSM9377869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377870,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,55,male,male,GSE313918:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4081,36601,counts,pixel,3.9525648421814816,platform_constant,True,H&E,3.9525648421814816,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377870,,,test,hesrt,samples/GSE313918/GSM9377870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377871,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,55,male,male,GSE313918:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4979,36601,counts,pixel,3.9481300417716754,platform_constant,True,H&E,3.9481300417716754,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377871,,,test,hesrt,samples/GSE313918/GSM9377871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377872,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,55,male,male,GSE313918:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4984,36601,counts,pixel,3.947688900663155,platform_constant,True,H&E,3.947688900663155,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377872,,,test,hesrt,samples/GSE313918/GSM9377872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377873,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,55,male,male,GSE313918:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4867,36601,counts,pixel,3.918546950052345,platform_constant,True,H&E,3.918546950052345,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377873,,,test,hesrt,samples/GSE313918/GSM9377873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377873,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,55,male,male,GSE313918:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4867,36601,counts,pixel,3.9185469500523453,platform_constant,True,H&E,3.9185469500523453,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377873,,,test,hesrt,samples/GSE313918/GSM9377873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377874,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4510,36601,counts,pixel,3.8519419795526577,platform_constant,True,H&E,3.8519419795526577,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377874,,,test,hesrt,samples/GSE313918/GSM9377874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377875,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,female,female,GSE313918:SD010/18,SD010/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4950,36601,counts,pixel,3.846337779711802,platform_constant,True,H&E,3.846337779711802,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377875,,,test,hesrt,samples/GSE313918/GSM9377875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377876,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,female,female,GSE313918:SD010/18,SD010/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,36601,counts,pixel,3.8608654879049022,platform_constant,True,H&E,3.8608654879049022,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377876,,,test,hesrt,samples/GSE313918/GSM9377876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9838,26 +9838,26 @@ GSM9377878,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underl GSM9377879,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,female,female,GSE313918:SD010/18,SD010/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4986,36601,counts,pixel,3.858466407850609,platform_constant,True,H&E,3.858466407850609,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377879,,,test,hesrt,samples/GSE313918/GSM9377879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377880,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4133,36601,counts,pixel,3.862575980265974,platform_constant,True,H&E,3.862575980265974,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377880,,,test,hesrt,samples/GSE313918/GSM9377880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377881,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4520,36601,counts,pixel,3.8415558809815655,platform_constant,True,H&E,3.8415558809815655,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377881,,,test,hesrt,samples/GSE313918/GSM9377881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377882,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,76,female,female,GSE313918:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4158,36601,counts,pixel,3.8387788626836,platform_constant,True,H&E,3.8387788626836,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377882,,,test,hesrt,samples/GSE313918/GSM9377882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377882,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,76,female,female,GSE313918:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4158,36601,counts,pixel,3.8387788626835997,platform_constant,True,H&E,3.8387788626835997,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377882,,,test,hesrt,samples/GSE313918/GSM9377882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377883,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,76,female,female,GSE313918:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4601,36601,counts,pixel,3.852024443329089,platform_constant,True,H&E,3.852024443329089,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377883,,,test,hesrt,samples/GSE313918/GSM9377883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377884,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD014/14,SD014/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4755,36601,counts,pixel,3.847837165054053,platform_constant,True,H&E,3.847837165054053,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377884,,,test,hesrt,samples/GSE313918/GSM9377884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377885,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4411,36601,counts,pixel,3.873831416104325,platform_constant,True,H&E,3.873831416104325,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377885,,,test,hesrt,samples/GSE313918/GSM9377885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377884,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD014/14,SD014/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4755,36601,counts,pixel,3.8478371650540524,platform_constant,True,H&E,3.8478371650540524,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377884,,,test,hesrt,samples/GSE313918/GSM9377884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377885,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4411,36601,counts,pixel,3.8738314161043244,platform_constant,True,H&E,3.8738314161043244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377885,,,test,hesrt,samples/GSE313918/GSM9377885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377886,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4288,36601,counts,pixel,3.851183770957679,platform_constant,True,H&E,3.851183770957679,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377886,,,test,hesrt,samples/GSE313918/GSM9377886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377887,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4268,36601,counts,pixel,3.8528138062034794,platform_constant,True,H&E,3.8528138062034794,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377887,,,test,hesrt,samples/GSE313918/GSM9377887,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377887,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4268,36601,counts,pixel,3.8528138062034785,platform_constant,True,H&E,3.8528138062034785,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377887,,,test,hesrt,samples/GSE313918/GSM9377887,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377888,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4636,36601,counts,pixel,3.883805126537965,platform_constant,True,H&E,3.883805126537965,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377888,,,test,hesrt,samples/GSE313918/GSM9377888,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377889,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD014/14,SD014/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4487,36601,counts,pixel,3.869651391526983,platform_constant,True,H&E,3.869651391526983,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377889,,,test,hesrt,samples/GSE313918/GSM9377889,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377890,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD014/14,SD014/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4519,36601,counts,pixel,3.85516332197855,platform_constant,True,H&E,3.85516332197855,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377890,,,test,hesrt,samples/GSE313918/GSM9377890,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377891,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3689,36601,counts,pixel,3.9250575046617375,platform_constant,True,H&E,3.9250575046617375,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377891,,,test,hesrt,samples/GSE313918/GSM9377891,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377892,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4533,36601,counts,pixel,3.876852358998886,platform_constant,True,H&E,3.876852358998886,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377892,,,test,hesrt,samples/GSE313918/GSM9377892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377893,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD029/15,SD029/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4320,36601,counts,pixel,3.942586914465792,platform_constant,True,H&E,3.942586914465792,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377893,,,test,hesrt,samples/GSE313918/GSM9377893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377893,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD029/15,SD029/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4320,36601,counts,pixel,3.9425869144657923,platform_constant,True,H&E,3.9425869144657923,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377893,,,test,hesrt,samples/GSE313918/GSM9377893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377894,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD029/15,SD029/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3249,36601,counts,pixel,3.931957201276503,platform_constant,True,H&E,3.931957201276503,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377894,,,test,hesrt,samples/GSE313918/GSM9377894,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377895,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD029/15,SD029/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4724,36601,counts,pixel,3.9097718433094975,platform_constant,True,H&E,3.9097718433094975,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377895,,,test,hesrt,samples/GSE313918/GSM9377895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377895,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD029/15,SD029/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4724,36601,counts,pixel,3.9097718433094983,platform_constant,True,H&E,3.9097718433094983,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377895,,,test,hesrt,samples/GSE313918/GSM9377895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377896,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD029/15,SD029/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4211,36601,counts,pixel,3.9056935762805978,platform_constant,True,H&E,3.9056935762805978,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377896,,,test,hesrt,samples/GSE313918/GSM9377896,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377897,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4101,36601,counts,pixel,3.934287708206387,platform_constant,True,H&E,3.934287708206387,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377897,,,test,hesrt,samples/GSE313918/GSM9377897,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377898,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD003/17,SD003/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4419,36601,counts,pixel,3.928747894492602,platform_constant,True,H&E,3.928747894492602,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377898,,,test,hesrt,samples/GSE313918/GSM9377898,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377899,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD003/17,SD003/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4291,36601,counts,pixel,3.9108850932348647,platform_constant,True,H&E,3.9108850932348647,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377899,,,test,hesrt,samples/GSE313918/GSM9377899,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377900,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3980,36601,counts,pixel,3.907867475769073,platform_constant,True,H&E,3.907867475769073,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377900,,,test,hesrt,samples/GSE313918/GSM9377900,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377901,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3925,36601,counts,pixel,3.902871412673704,platform_constant,True,H&E,3.902871412673704,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377901,,,test,hesrt,samples/GSE313918/GSM9377901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377901,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3925,36601,counts,pixel,3.9028714126737034,platform_constant,True,H&E,3.9028714126737034,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377901,,,test,hesrt,samples/GSE313918/GSM9377901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377902,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD003/17,SD003/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4488,36601,counts,pixel,3.926769832329407,platform_constant,True,H&E,3.926769832329407,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377902,,,test,hesrt,samples/GSE313918/GSM9377902,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377903,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,50,male,male,GSE313918:SD003/17,SD003/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4875,36601,counts,pixel,3.9023238327508936,platform_constant,True,H&E,3.9023238327508936,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377903,,,test,hesrt,samples/GSE313918/GSM9377903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377904,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4417,36601,counts,pixel,3.9241530814965015,platform_constant,True,H&E,3.9241530814965015,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377904,,,test,hesrt,samples/GSE313918/GSM9377904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9867,24 +9867,24 @@ GSM9377907,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underl GSM9377908,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4190,36601,counts,pixel,3.8992176154747447,platform_constant,True,H&E,3.8992176154747447,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377908,,,test,hesrt,samples/GSE313918/GSM9377908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377909,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4112,36601,counts,pixel,3.909119269041063,platform_constant,True,H&E,3.909119269041063,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377909,,,test,hesrt,samples/GSE313918/GSM9377909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377910,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4531,36601,counts,pixel,3.923059131769598,platform_constant,True,H&E,3.923059131769598,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377910,,,test,hesrt,samples/GSE313918/GSM9377910,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377911,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4860,36601,counts,pixel,3.934171128926807,platform_constant,True,H&E,3.934171128926807,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377911,,,test,hesrt,samples/GSE313918/GSM9377911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377912,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4966,36601,counts,pixel,3.9152376627722503,platform_constant,True,H&E,3.9152376627722503,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377912,,,test,hesrt,samples/GSE313918/GSM9377912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377911,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4860,36601,counts,pixel,3.9341711289268066,platform_constant,True,H&E,3.9341711289268066,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377911,,,test,hesrt,samples/GSE313918/GSM9377911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377912,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4966,36601,counts,pixel,3.9152376627722507,platform_constant,True,H&E,3.9152376627722507,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377912,,,test,hesrt,samples/GSE313918/GSM9377912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377913,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3571,36601,counts,pixel,3.929312231354919,platform_constant,True,H&E,3.929312231354919,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377913,,,test,hesrt,samples/GSE313918/GSM9377913,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377914,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4574,36601,counts,pixel,3.922018052143964,platform_constant,True,H&E,3.922018052143964,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377914,,,test,hesrt,samples/GSE313918/GSM9377914,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377915,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4709,36601,counts,pixel,3.922502477752024,platform_constant,True,H&E,3.922502477752024,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377915,,,test,hesrt,samples/GSE313918/GSM9377915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377915,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4709,36601,counts,pixel,3.9225024777520234,platform_constant,True,H&E,3.9225024777520234,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377915,,,test,hesrt,samples/GSE313918/GSM9377915,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377916,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,82,male,male,GSE313918:SD030/19,SD030/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4807,36601,counts,pixel,3.903750211232817,platform_constant,True,H&E,3.903750211232817,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377916,,,test,hesrt,samples/GSE313918/GSM9377916,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377917,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,83,female,female,GSE313918:SD045/15,SD045/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4359,36601,counts,pixel,3.9221742218453928,platform_constant,True,H&E,3.9221742218453928,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377917,,,test,hesrt,samples/GSE313918/GSM9377917,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377918,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,83,female,female,GSE313918:SD045/15,SD045/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4671,36601,counts,pixel,3.910507264277775,platform_constant,True,H&E,3.910507264277775,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377918,,,test,hesrt,samples/GSE313918/GSM9377918,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377919,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,83,female,female,GSE313918:SD045/15,SD045/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4987,36601,counts,pixel,3.950857825131771,platform_constant,True,H&E,3.950857825131771,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377919,,,test,hesrt,samples/GSE313918/GSM9377919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377920,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,83,female,female,GSE313918:SD045/15,SD045/15,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3781,36601,counts,pixel,3.932082944637424,platform_constant,True,H&E,3.932082944637424,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377920,,,test,hesrt,samples/GSE313918/GSM9377920,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377921,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4843,36601,counts,pixel,3.915617402539615,platform_constant,True,H&E,3.915617402539615,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377921,,,test,hesrt,samples/GSE313918/GSM9377921,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377922,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3683,36601,counts,pixel,3.943451171577076,platform_constant,True,H&E,3.943451171577076,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377922,,,test,hesrt,samples/GSE313918/GSM9377922,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377922,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3683,36601,counts,pixel,3.9434511715770757,platform_constant,True,H&E,3.9434511715770757,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377922,,,test,hesrt,samples/GSE313918/GSM9377922,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377923,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3223,36601,counts,pixel,3.912278825908097,platform_constant,True,H&E,3.912278825908097,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377923,,,test,hesrt,samples/GSE313918/GSM9377923,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377924,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4441,36601,counts,pixel,3.918956808024728,platform_constant,True,H&E,3.918956808024728,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377924,,,test,hesrt,samples/GSE313918/GSM9377924,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377925,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4641,36601,counts,pixel,3.947658364964124,platform_constant,True,H&E,3.947658364964124,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377925,,,test,hesrt,samples/GSE313918/GSM9377925,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377925,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,63,female,female,GSE313918:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4641,36601,counts,pixel,3.9476583649641235,platform_constant,True,H&E,3.9476583649641235,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377925,,,test,hesrt,samples/GSE313918/GSM9377925,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377926,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,36601,counts,pixel,3.895568159140689,platform_constant,True,H&E,3.895568159140689,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377926,,,test,hesrt,samples/GSE313918/GSM9377926,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377927,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4880,36601,counts,pixel,3.9691030106994463,platform_constant,True,H&E,3.9691030106994463,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377927,,,test,hesrt,samples/GSE313918/GSM9377927,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377928,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4440,36601,counts,pixel,3.974301955434828,platform_constant,True,H&E,3.974301955434828,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377928,,,test,hesrt,samples/GSE313918/GSM9377928,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377928,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4440,36601,counts,pixel,3.9743019554348282,platform_constant,True,H&E,3.9743019554348282,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377928,,,test,hesrt,samples/GSE313918/GSM9377928,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377929,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,71,male,male,GSE313918:SD024/18,SD024/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4287,36601,counts,pixel,3.96229673123204,platform_constant,True,H&E,3.96229673123204,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377929,,,test,hesrt,samples/GSE313918/GSM9377929,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377930,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3603,36601,counts,pixel,3.960693671351824,platform_constant,True,H&E,3.960693671351824,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377930,,,test,hesrt,samples/GSE313918/GSM9377930,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377931,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,70,male,male,GSE313918:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3712,36601,counts,pixel,3.943723935161945,platform_constant,True,H&E,3.943723935161945,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377931,,,test,hesrt,samples/GSE313918/GSM9377931,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9892,53 +9892,53 @@ GSM9377932,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underl GSM9377933,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,67,female,female,GSE313918:SD002/16,SD002/16,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4090,36601,counts,pixel,3.938709248027337,platform_constant,True,H&E,3.938709248027337,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377933,,,test,hesrt,samples/GSE313918/GSM9377933,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377934,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4017,36601,counts,pixel,3.909846910538496,platform_constant,True,H&E,3.909846910538496,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377934,,,test,hesrt,samples/GSE313918/GSM9377934,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377935,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,57,male,male,GSE313918:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3418,36601,counts,pixel,3.903256959986892,platform_constant,True,H&E,3.903256959986892,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377935,,,test,hesrt,samples/GSE313918/GSM9377935,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377936,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4645,36601,counts,pixel,3.954553822574719,platform_constant,True,H&E,3.954553822574719,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377936,,,test,hesrt,samples/GSE313918/GSM9377936,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377936,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4645,36601,counts,pixel,3.9545538225747188,platform_constant,True,H&E,3.9545538225747188,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377936,,,test,hesrt,samples/GSE313918/GSM9377936,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377937,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4272,36601,counts,pixel,3.9173739197574697,platform_constant,True,H&E,3.9173739197574697,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377937,,,test,hesrt,samples/GSE313918/GSM9377937,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377938,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4038,36601,counts,pixel,3.8941678918226224,platform_constant,True,H&E,3.8941678918226224,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377938,,,test,hesrt,samples/GSE313918/GSM9377938,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377939,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4730,36601,counts,pixel,3.882072300734937,platform_constant,True,H&E,3.882072300734937,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377939,,,test,hesrt,samples/GSE313918/GSM9377939,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377940,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4788,36601,counts,pixel,3.897165882283303,platform_constant,True,H&E,3.897165882283303,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377940,,,test,hesrt,samples/GSE313918/GSM9377940,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377941,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4589,36601,counts,pixel,3.880379260603005,platform_constant,True,H&E,3.880379260603005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377941,,,test,hesrt,samples/GSE313918/GSM9377941,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377940,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4788,36601,counts,pixel,3.8971658822833026,platform_constant,True,H&E,3.8971658822833026,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377940,,,test,hesrt,samples/GSE313918/GSM9377940,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377941,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4589,36601,counts,pixel,3.8803792606030054,platform_constant,True,H&E,3.8803792606030054,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377941,,,test,hesrt,samples/GSE313918/GSM9377941,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377942,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4277,36601,counts,pixel,3.876764813864023,platform_constant,True,H&E,3.876764813864023,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377942,,,test,hesrt,samples/GSE313918/GSM9377942,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377943,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4778,36601,counts,pixel,3.876151143988471,platform_constant,True,H&E,3.876151143988471,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377943,,,test,hesrt,samples/GSE313918/GSM9377943,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377943,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4778,36601,counts,pixel,3.8761511439884706,platform_constant,True,H&E,3.8761511439884706,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377943,,,test,hesrt,samples/GSE313918/GSM9377943,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377944,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4029,36601,counts,pixel,3.899703017248089,platform_constant,True,H&E,3.899703017248089,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377944,,,test,hesrt,samples/GSE313918/GSM9377944,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377945,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4645,36601,counts,pixel,3.887267032813218,platform_constant,True,H&E,3.887267032813218,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377945,,,test,hesrt,samples/GSE313918/GSM9377945,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377946,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4396,36601,counts,pixel,3.914731989380301,platform_constant,True,H&E,3.914731989380301,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377946,,,test,hesrt,samples/GSE313918/GSM9377946,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377947,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3800,36601,counts,pixel,3.879823134698973,platform_constant,True,H&E,3.879823134698973,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377947,,,test,hesrt,samples/GSE313918/GSM9377947,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377946,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4396,36601,counts,pixel,3.9147319893803005,platform_constant,True,H&E,3.9147319893803005,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377946,,,test,hesrt,samples/GSE313918/GSM9377946,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377947,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD014/13,SD014/13,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3800,36601,counts,pixel,3.8798231346989724,platform_constant,True,H&E,3.8798231346989724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377947,,,test,hesrt,samples/GSE313918/GSM9377947,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377948,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4510,36601,counts,pixel,3.9061956598518495,platform_constant,True,H&E,3.9061956598518495,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377948,,,test,hesrt,samples/GSE313918/GSM9377948,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377949,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,71,female,female,GSE313918:SD012/17,SD012/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4887,36601,counts,pixel,3.904281014711138,platform_constant,True,H&E,3.904281014711138,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377949,,,test,hesrt,samples/GSE313918/GSM9377949,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377950,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3986,36601,counts,pixel,3.906777422131101,platform_constant,True,H&E,3.906777422131101,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377950,,,test,hesrt,samples/GSE313918/GSM9377950,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377951,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3962,36601,counts,pixel,3.8765101256389074,platform_constant,True,H&E,3.8765101256389074,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377951,,,test,hesrt,samples/GSE313918/GSM9377951,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377952,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4055,36601,counts,pixel,3.90487320418915,platform_constant,True,H&E,3.90487320418915,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377952,,,test,hesrt,samples/GSE313918/GSM9377952,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377953,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,62,male,male,GSE313918:SD027/14,SD027/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3476,36601,counts,pixel,3.909926436766753,platform_constant,True,H&E,3.909926436766753,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377953,,,test,hesrt,samples/GSE313918/GSM9377953,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377954,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD046/17,SD046/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4508,36601,counts,pixel,3.931794637961036,platform_constant,True,H&E,3.931794637961036,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377954,,,test,hesrt,samples/GSE313918/GSM9377954,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377954,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD046/17,SD046/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4508,36601,counts,pixel,3.9317946379610356,platform_constant,True,H&E,3.9317946379610356,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377954,,,test,hesrt,samples/GSE313918/GSM9377954,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377955,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD046/17,SD046/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4188,36601,counts,pixel,3.895236087079976,platform_constant,True,H&E,3.895236087079976,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377955,,,test,hesrt,samples/GSE313918/GSM9377955,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377956,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD046/17,SD046/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4458,36601,counts,pixel,3.9270319436968624,platform_constant,True,H&E,3.9270319436968624,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377956,,,test,hesrt,samples/GSE313918/GSM9377956,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377957,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD046/17,SD046/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4096,36601,counts,pixel,3.947164313921474,platform_constant,True,H&E,3.947164313921474,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377957,,,test,hesrt,samples/GSE313918/GSM9377957,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377958,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,46,female,female,GSE313918:SD014/18,SD014/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3667,36601,counts,pixel,3.888943461138134,platform_constant,True,H&E,3.888943461138134,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377958,,,test,hesrt,samples/GSE313918/GSM9377958,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377959,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,46,female,female,GSE313918:SD014/18,SD014/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4855,36601,counts,pixel,3.914795769342859,platform_constant,True,H&E,3.914795769342859,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377959,,,test,hesrt,samples/GSE313918/GSM9377959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377960,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD035/14,SD035/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3432,36601,counts,pixel,3.889167474540709,platform_constant,True,H&E,3.889167474540709,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377960,,,test,hesrt,samples/GSE313918/GSM9377960,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377960,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD035/14,SD035/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3432,36601,counts,pixel,3.8891674745407094,platform_constant,True,H&E,3.8891674745407094,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377960,,,test,hesrt,samples/GSE313918/GSM9377960,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377961,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD035/14,SD035/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3370,36601,counts,pixel,3.912690164033702,platform_constant,True,H&E,3.912690164033702,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377961,,,test,hesrt,samples/GSE313918/GSM9377961,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377962,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,46,female,female,GSE313918:SD014/18,SD014/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4880,36601,counts,pixel,3.887529962799256,platform_constant,True,H&E,3.887529962799256,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377962,,,test,hesrt,samples/GSE313918/GSM9377962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377963,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,46,female,female,GSE313918:SD014/18,SD014/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4782,36601,counts,pixel,3.928642496703157,platform_constant,True,H&E,3.928642496703157,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377963,,,test,hesrt,samples/GSE313918/GSM9377963,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377963,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,46,female,female,GSE313918:SD014/18,SD014/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4782,36601,counts,pixel,3.9286424967031572,platform_constant,True,H&E,3.9286424967031572,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377963,,,test,hesrt,samples/GSE313918/GSM9377963,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377964,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD035/14,SD035/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3621,36601,counts,pixel,3.89530433828524,platform_constant,True,H&E,3.89530433828524,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377964,,,test,hesrt,samples/GSE313918/GSM9377964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377965,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD035/14,SD035/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3216,36601,counts,pixel,3.909282936584841,platform_constant,True,H&E,3.909282936584841,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377965,,,test,hesrt,samples/GSE313918/GSM9377965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377966,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4500,36601,counts,pixel,3.890953307629424,platform_constant,True,H&E,3.890953307629424,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377966,,,test,hesrt,samples/GSE313918/GSM9377966,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377967,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4123,36601,counts,pixel,3.881458890057832,platform_constant,True,H&E,3.881458890057832,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377967,,,test,hesrt,samples/GSE313918/GSM9377967,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377968,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD028/18,SD028/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4448,36601,counts,pixel,3.874982947909857,platform_constant,True,H&E,3.874982947909857,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377968,,,test,hesrt,samples/GSE313918/GSM9377968,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377965,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,59,female,female,GSE313918:SD035/14,SD035/14,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3216,36601,counts,pixel,3.9092829365848405,platform_constant,True,H&E,3.9092829365848405,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377965,,,test,hesrt,samples/GSE313918/GSM9377965,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377966,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4500,36601,counts,pixel,3.8909533076294243,platform_constant,True,H&E,3.8909533076294243,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377966,,,test,hesrt,samples/GSE313918/GSM9377966,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377967,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4123,36601,counts,pixel,3.8814588900578317,platform_constant,True,H&E,3.8814588900578317,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377967,,,test,hesrt,samples/GSE313918/GSM9377967,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377968,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD028/18,SD028/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4448,36601,counts,pixel,3.8749829479098565,platform_constant,True,H&E,3.8749829479098565,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377968,,,test,hesrt,samples/GSE313918/GSM9377968,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377969,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4515,36601,counts,pixel,3.904228057213383,platform_constant,True,H&E,3.904228057213383,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377969,,,test,hesrt,samples/GSE313918/GSM9377969,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377970,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3680,36601,counts,pixel,3.898974917442468,platform_constant,True,H&E,3.898974917442468,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377970,,,test,hesrt,samples/GSE313918/GSM9377970,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377970,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,adult,age rule: bare number read as years,adult,40,male,male,GSE313918:SD006/21,SD006/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3680,36601,counts,pixel,3.8989749174424677,platform_constant,True,H&E,3.8989749174424677,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377970,,,test,hesrt,samples/GSE313918/GSM9377970,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377971,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD028/18,SD028/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4563,36601,counts,pixel,3.912061216908461,platform_constant,True,H&E,3.912061216908461,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377971,,,test,hesrt,samples/GSE313918/GSM9377971,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377972,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD028/18,SD028/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4544,36601,counts,pixel,3.90799353226948,platform_constant,True,H&E,3.90799353226948,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377972,,,test,hesrt,samples/GSE313918/GSM9377972,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377972,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD028/18,SD028/18,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4544,36601,counts,pixel,3.9079935322694803,platform_constant,True,H&E,3.9079935322694803,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377972,,,test,hesrt,samples/GSE313918/GSM9377972,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377973,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4628,36601,counts,pixel,3.8989088775725342,platform_constant,True,H&E,3.8989088775725342,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377973,,,test,hesrt,samples/GSE313918/GSM9377973,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377974,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3828,36601,counts,pixel,3.883933089201348,platform_constant,True,H&E,3.883933089201348,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377974,,,test,hesrt,samples/GSE313918/GSM9377974,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377975,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3624,36601,counts,pixel,3.908593382637068,platform_constant,True,H&E,3.908593382637068,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377975,,,test,hesrt,samples/GSE313918/GSM9377975,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377974,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3828,36601,counts,pixel,3.8839330892013475,platform_constant,True,H&E,3.8839330892013475,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377974,,,test,hesrt,samples/GSE313918/GSM9377974,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377975,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3624,36601,counts,pixel,3.9085933826370676,platform_constant,True,H&E,3.9085933826370676,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377975,,,test,hesrt,samples/GSE313918/GSM9377975,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377976,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4243,36601,counts,pixel,3.908289267566987,platform_constant,True,H&E,3.908289267566987,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377976,,,test,hesrt,samples/GSE313918/GSM9377976,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377977,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4018,36601,counts,pixel,3.934298759275123,platform_constant,True,H&E,3.934298759275123,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377977,,,test,hesrt,samples/GSE313918/GSM9377977,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377978,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3178,36601,counts,pixel,3.9298169535614487,platform_constant,True,H&E,3.9298169535614487,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377978,,,test,hesrt,samples/GSE313918/GSM9377978,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377979,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3608,36601,counts,pixel,3.9294408508902,platform_constant,True,H&E,3.9294408508902,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377979,,,test,hesrt,samples/GSE313918/GSM9377979,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377980,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD022/21,SD022/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3341,36601,counts,pixel,3.9249671030277953,platform_constant,True,H&E,3.9249671030277953,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377980,,,test,hesrt,samples/GSE313918/GSM9377980,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377981,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4874,36601,counts,pixel,3.852208338027473,platform_constant,True,H&E,3.852208338027473,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377981,,,test,hesrt,samples/GSE313918/GSM9377981,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377982,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4598,36601,counts,pixel,3.852235800178504,platform_constant,True,H&E,3.852235800178504,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377982,,,test,hesrt,samples/GSE313918/GSM9377982,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377982,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4598,36601,counts,pixel,3.8522358001785038,platform_constant,True,H&E,3.8522358001785038,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377982,,,test,hesrt,samples/GSE313918/GSM9377982,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377983,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3913,36601,counts,pixel,3.8592607426908514,platform_constant,True,H&E,3.8592607426908514,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377983,,,test,hesrt,samples/GSE313918/GSM9377983,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377984,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3963,36601,counts,pixel,3.8691455545615727,platform_constant,True,H&E,3.8691455545615727,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377984,,,test,hesrt,samples/GSE313918/GSM9377984,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377985,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4983,36601,counts,pixel,3.8708694043325287,platform_constant,True,H&E,3.8708694043325287,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377985,,,test,hesrt,samples/GSE313918/GSM9377985,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -9947,40 +9947,40 @@ GSM9377987,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underl GSM9377988,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,81,male,male,GSE313918:SD026/21,SD026/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4472,36601,counts,pixel,3.875785777085229,platform_constant,True,H&E,3.875785777085229,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377988,,,test,hesrt,samples/GSE313918/GSM9377988,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377989,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD048/21,SD048/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3353,36601,counts,pixel,3.8856112973083934,platform_constant,True,H&E,3.8856112973083934,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377989,,,test,hesrt,samples/GSE313918/GSM9377989,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377990,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD048/21,SD048/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3572,36601,counts,pixel,3.870032246327292,platform_constant,True,H&E,3.870032246327292,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377990,,,test,hesrt,samples/GSE313918/GSM9377990,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377991,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD045/21,SD045/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4796,36601,counts,pixel,3.861291400662594,platform_constant,True,H&E,3.861291400662594,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377991,,,test,hesrt,samples/GSE313918/GSM9377991,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377991,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD045/21,SD045/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4796,36601,counts,pixel,3.8612914006625942,platform_constant,True,H&E,3.8612914006625942,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377991,,,test,hesrt,samples/GSE313918/GSM9377991,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377992,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD045/21,SD045/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4583,36601,counts,pixel,3.8671164849937663,platform_constant,True,H&E,3.8671164849937663,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377992,,,test,hesrt,samples/GSE313918/GSM9377992,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377993,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD048/21,SD048/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2751,36601,counts,pixel,3.873470651241732,platform_constant,True,H&E,3.873470651241732,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377993,,,test,hesrt,samples/GSE313918/GSM9377993,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377993,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD048/21,SD048/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2751,36601,counts,pixel,3.8734706512417323,platform_constant,True,H&E,3.8734706512417323,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377993,,,test,hesrt,samples/GSE313918/GSM9377993,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377994,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,aged,age rule: bare number read as years,aged,65,female,female,GSE313918:SD048/21,SD048/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3383,36601,counts,pixel,3.88378690514017,platform_constant,True,H&E,3.88378690514017,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377994,,,test,hesrt,samples/GSE313918/GSM9377994,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377995,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD045/21,SD045/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4967,36601,counts,pixel,3.8947233273606088,platform_constant,True,H&E,3.8947233273606088,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377995,,,test,hesrt,samples/GSE313918/GSM9377995,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377996,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,53,female,female,GSE313918:SD045/21,SD045/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4992,36601,counts,pixel,3.902291735601221,platform_constant,True,H&E,3.902291735601221,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377996,,,test,hesrt,samples/GSE313918/GSM9377996,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377997,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,51,female,female,GSE313918:SD015/22,SD015/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4218,36601,counts,pixel,3.915754906717252,platform_constant,True,H&E,3.915754906717252,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377997,,,test,hesrt,samples/GSE313918/GSM9377997,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9377998,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,51,female,female,GSE313918:SD015/22,SD015/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4433,36601,counts,pixel,3.925648869760841,platform_constant,True,H&E,3.925648869760841,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377998,,,test,hesrt,samples/GSE313918/GSM9377998,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9377998,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,51,female,female,GSE313918:SD015/22,SD015/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4433,36601,counts,pixel,3.9256488697608405,platform_constant,True,H&E,3.9256488697608405,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377998,,,test,hesrt,samples/GSE313918/GSM9377998,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9377999,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,52,female,female,GSE313918:SD053/21,SD053/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4819,36601,counts,pixel,3.921552396919561,platform_constant,True,H&E,3.921552396919561,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9377999,,,test,hesrt,samples/GSE313918/GSM9377999,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9378000,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,52,female,female,GSE313918:SD053/21,SD053/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4031,36601,counts,pixel,3.907399523890033,platform_constant,True,H&E,3.907399523890033,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378000,,,test,hesrt,samples/GSE313918/GSM9378000,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9378000,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,52,female,female,GSE313918:SD053/21,SD053/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4031,36601,counts,pixel,3.9073995238900325,platform_constant,True,H&E,3.9073995238900325,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378000,,,test,hesrt,samples/GSE313918/GSM9378000,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378001,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,51,female,female,GSE313918:SD015/22,SD015/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4654,36601,counts,pixel,3.9013183811468792,platform_constant,True,H&E,3.9013183811468792,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378001,,,test,hesrt,samples/GSE313918/GSM9378001,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9378002,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,51,female,female,GSE313918:SD015/22,SD015/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4661,36601,counts,pixel,3.879273732916056,platform_constant,True,H&E,3.879273732916056,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378002,,,test,hesrt,samples/GSE313918/GSM9378002,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9378003,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,52,female,female,GSE313918:SD053/21,SD053/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3670,36601,counts,pixel,3.940700618613064,platform_constant,True,H&E,3.940700618613064,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378003,,,test,hesrt,samples/GSE313918/GSM9378003,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9378002,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,51,female,female,GSE313918:SD015/22,SD015/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4661,36601,counts,pixel,3.8792737329160554,platform_constant,True,H&E,3.8792737329160554,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378002,,,test,hesrt,samples/GSE313918/GSM9378002,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9378003,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,52,female,female,GSE313918:SD053/21,SD053/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3670,36601,counts,pixel,3.9407006186130644,platform_constant,True,H&E,3.9407006186130644,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378003,,,test,hesrt,samples/GSE313918/GSM9378003,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378004,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALS,adult,age rule: bare number read as years,adult,52,female,female,GSE313918:SD053/21,SD053/21,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4616,36601,counts,pixel,3.924662785017499,platform_constant,True,H&E,3.924662785017499,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378004,,,test,hesrt,samples/GSE313918/GSM9378004,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9378005,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD025/17,SD025/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4067,36601,counts,pixel,3.870873117184528,platform_constant,True,H&E,3.870873117184528,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378005,,,test,hesrt,samples/GSE313918/GSM9378005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9378005,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD025/17,SD025/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4067,36601,counts,pixel,3.8708731171845283,platform_constant,True,H&E,3.8708731171845283,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378005,,,test,hesrt,samples/GSE313918/GSM9378005,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378006,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD025/17,SD025/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2748,36601,counts,pixel,3.8646001994753103,platform_constant,True,H&E,3.8646001994753103,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378006,,,test,hesrt,samples/GSE313918/GSM9378006,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378007,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD025/17,SD025/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3997,36601,counts,pixel,3.8778820124849847,platform_constant,True,H&E,3.8778820124849847,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378007,,,test,hesrt,samples/GSE313918/GSM9378007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378008,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,86,female,female,GSE313918:SD013/23,SD013/23,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3954,36601,counts,pixel,3.925323933824272,platform_constant,True,H&E,3.925323933824272,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378008,,,test,hesrt,samples/GSE313918/GSM9378008,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378009,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,86,female,female,GSE313918:SD013/23,SD013/23,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3943,36601,counts,pixel,3.8971787399137967,platform_constant,True,H&E,3.8971787399137967,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378009,,,test,hesrt,samples/GSE313918/GSM9378009,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378010,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD025/17,SD025/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3840,36601,counts,pixel,3.888901047675081,platform_constant,True,H&E,3.888901047675081,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378010,,,test,hesrt,samples/GSE313918/GSM9378010,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378011,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,aged,age rule: bare number read as years,aged,73,male,male,GSE313918:SD025/17,SD025/17,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4674,36601,counts,pixel,3.8976453768549577,platform_constant,True,H&E,3.8976453768549577,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378011,,,test,hesrt,samples/GSE313918/GSM9378011,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9378012,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD026/19,SD026/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4511,36601,counts,pixel,3.89647538246436,platform_constant,True,H&E,3.89647538246436,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378012,,,test,hesrt,samples/GSE313918/GSM9378012,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9378012,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD026/19,SD026/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4511,36601,counts,pixel,3.8964753824643594,platform_constant,True,H&E,3.8964753824643594,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378012,,,test,hesrt,samples/GSE313918/GSM9378012,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378013,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD026/19,SD026/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4574,36601,counts,pixel,3.919594528188989,platform_constant,True,H&E,3.919594528188989,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378013,,,test,hesrt,samples/GSE313918/GSM9378013,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378014,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD031/22,SD031/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2759,36601,counts,pixel,3.914538860234774,platform_constant,True,H&E,3.914538860234774,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378014,,,test,hesrt,samples/GSE313918/GSM9378014,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378015,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD031/22,SD031/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2493,36601,counts,pixel,3.934402374069018,platform_constant,True,H&E,3.934402374069018,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378015,,,test,hesrt,samples/GSE313918/GSM9378015,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378016,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD031/22,SD031/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1686,36601,counts,pixel,3.912311747999808,platform_constant,True,H&E,3.912311747999808,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378016,,,test,hesrt,samples/GSE313918/GSM9378016,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378017,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006483,Brodmann (1909) area 46,BA46,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,amyotrophic lateral sclerosis,ALSci,aged,age rule: bare number read as years,aged,74,female,female,GSE313918:SD031/22,SD031/22,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1745,36601,counts,pixel,3.939262101091385,platform_constant,True,H&E,3.939262101091385,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378017,,,test,hesrt,samples/GSE313918/GSM9378017,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9378018,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD026/19,SD026/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4936,36601,counts,pixel,3.9169632793962,platform_constant,True,H&E,3.9169632793962,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378018,,,test,hesrt,samples/GSE313918/GSM9378018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9378018,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD026/19,SD026/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4936,36601,counts,pixel,3.9169632793962004,platform_constant,True,H&E,3.9169632793962004,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378018,,,test,hesrt,samples/GSE313918/GSM9378018,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378019,GSE313918+GSE315586,GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0006481,Brodmann (1909) area 44,BA44,primary tissue,,,normal,luna,,Control,adult,age rule: bare number read as years,adult,58,male,male,GSE313918:SD026/19,SD026/19,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4524,36601,counts,pixel,3.915726439536683,platform_constant,True,H&E,3.915726439536683,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42551425,,GSM9378019,,,test,hesrt,samples/GSE313918/GSM9378019,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9378020,GSE313919,GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin organoids,organoid,MONDO:0005550,infectious disease,disease,mondo_predicate (Luna: perturbation),,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,hMulti_100g,xenium-2.0.0.5,cell,211545,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051754476762,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9378020,,,train,sda-all,samples/GSE313919/GSM9378020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.42, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation -GSM9378021,GSE313919,GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Skin organoids,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,hMulti_100g,xenium-1.5.0.3,cell,84812,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999927733729765,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9378021,,,train,sda-all,samples/GSE313919/GSM9378021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.31, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation +GSM9378021,GSE313919,GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Skin organoids,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,hMulti_100g,xenium-1.5.0.3,cell,84812,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999277337297654,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9378021,,,train,sda-all,samples/GSE313919/GSM9378021,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.31, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9378022,GSE313919,GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Skin organoids,organoid,MONDO:0005550,infectious disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,hMulti_100g,xenium-1.5.0.3,cell,76343,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999770768384375,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9378022,,,train,sda-all,samples/GSE313919/GSM9378022,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 0.37, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9378023,GSE313919,GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin organoids,organoid,MONDO:0005550,infectious disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,hMulti_100g,xenium-1.5.0.3,cell,76277,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999865613628845,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9378023,,,train,sda-all,samples/GSE313919/GSM9378023,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.36, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation -GSM9380392,GSE314035,GSE314035,Protective efficacy of AAV-expressed bNAbs co-delivered with PD-L1,Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Homo sapiens,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,3BNC117-only,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,688434,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.94165542464756,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42282848,,GSM9380392,,,train,sda-all,samples/GSE314035/GSM9380392,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.86, ""life_stage"": 1.0}",,feature_species_differs +GSM9380392,GSE314035,GSE314035,Protective efficacy of AAV-expressed bNAbs co-delivered with PD-L1,Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Homo sapiens,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,3BNC117-only,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,688434,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.9416554246475597,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42282848,,GSM9380392,,,train,sda-all,samples/GSE314035/GSM9380392,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.86, ""life_stage"": 1.0}",,feature_species_differs GSM9380393,GSE314035,GSE314035,Protective efficacy of AAV-expressed bNAbs co-delivered with PD-L1,Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Homo sapiens,skeletal muscle,luna,UBERON:0001134,skeletal muscle tissue,muscle,primary tissue,,,perturbation,luna,,3BNC117 plus PD-L1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,683436,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.940683878689568,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,42282848,,GSM9380393,,,train,sda-all,samples/GSE314035/GSM9380393,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.86, ""life_stage"": 1.0}",,feature_species_differs GSM9391434,GSE314260,GSE314260,Single-cell and spatial transcriptomics of A-P and D-V patterned human trunk embryoid model (hTEM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,hTEM.v3,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,230740,18085,counts,unstated,,unresolved,False,,,,,,units_unstated,zero_count_observations,VERIFIED,,,,,,GSM9391434,,,train,sda-all,samples/GSE314260/GSM9391434,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.79, ""disease_status"": 0.68, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM9391436,GSE314260,GSE314260,Single-cell and spatial transcriptomics of A-P and D-V patterned human trunk embryoid model (hTEM),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,hTEM.v3,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,154502,18085,counts,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,zero_count_observations,VERIFIED,,,,,,GSM9391436,,,train,sda-all,samples/GSE314260/GSM9391436,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.91, ""disease_status"": 0.72, ""uberon"": 0.42, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -9995,13 +9995,13 @@ GSM9393663,GSE314325+GSE314329,GSE314325,Inflammatory Monocytes Constrain YAP-In GSM9393664,GSE314325+GSE314329,GSE314325,Inflammatory Monocytes Constrain YAP-Induced Cell Proliferation [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,MERFISH Yap 4wk,not stated,luna,not stated,,unknown,,,,,,MERFISH/MERSCOPE,release v3,MERFISH,imaging-based,MERFISH,,,cell,486918,550,unknown,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42341114,,GSM9393664,,,test,sda-all,samples/GSE314325/GSM9393664,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 0.87}",, GSM9401276,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,131054,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.500001881396749,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401276,,,train,sda-all,samples/GSE314531/GSM9401276,sda-tissue-disease-2.3,"{""organ"": 0.45, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",organ;disease_status,low_confidence_annotation GSM9401277,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Irradiated,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,390706,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401277,,,train,sda-all,samples/GSE314531/GSM9401277,sda-tissue-disease-2.3,"{""organ"": 0.67, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9401278,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Hydrogel,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,129470,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999816125769973,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401278,,,train,sda-all,samples/GSE314531/GSM9401278,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM9401278,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Hydrogel,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,129470,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998161257699736,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401278,,,train,sda-all,samples/GSE314531/GSM9401278,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9401279,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,171943,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000111968579894,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401279,,,train,sda-all,samples/GSE314531/GSM9401279,sda-tissue-disease-2.3,"{""organ"": 0.58, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 0.49}",organ;disease_status;life_stage,low_confidence_annotation GSM9401280,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Irradiated,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,363456,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.500009661035663,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401280,,,train,sda-all,samples/GSE314531/GSM9401280,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9401281,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,215740,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000131222719487,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401281,,,train,sda-all,samples/GSE314531/GSM9401281,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 1.0, ""life_stage"": 0.85}",organ;disease_status,low_confidence_annotation GSM9401282,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Hydrogel,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,207599,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999971846846846,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401282,,,train,sda-all,samples/GSE314531/GSM9401282,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9401283,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Hydrogel,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,224696,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000150602409639,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401283,,,train,sda-all,samples/GSE314531/GSM9401283,sda-tissue-disease-2.3,"{""organ"": 0.46, ""sample_kind"": 0.99, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 0.97}",organ,low_confidence_annotation -GSM9401284,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Irradiated,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,362563,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944891436129,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401284,,,train,sda-all,samples/GSE314531/GSM9401284,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9401284,GSE314531,GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland Treated with Ep-FH,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,UBERON:0001736,submandibular gland,,primary tissue,,,perturbation,luna,,Irradiated,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,362563,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999448914361294,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9401284,,,train,sda-all,samples/GSE314531/GSM9401284,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9414344,GSE314851,GSE314851,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,coronary artery disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2302,17943,counts,pixel,4.436110943869739,platform_constant,True,H&E,4.436110943869739,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41610194,10.1126/science.adx1736,GSM9414344,,,train,hesrt,samples/GSE314851/GSM9414344,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9414345,GSE314851,GSE314851,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,coronary artery disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1523,17943,counts,pixel,4.436110943869739,platform_constant,True,H&E,4.436110943869739,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41610194,10.1126/science.adx1736,CG-ca1826e66722,cross_gse_redeposit,GSM9451519,train,hesrt,samples/GSE314851/GSM9414345,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9414346,GSE314851,GSE314851,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,coronary artery disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1430,17943,counts,pixel,4.436110943869739,platform_constant,True,H&E,4.436110943869739,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41610194,10.1126/science.adx1736,CG-6259f3c0f5e9,cross_gse_redeposit,GSM9451520,train,hesrt,samples/GSE314851/GSM9414346,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -10020,7 +10020,7 @@ GSM9414358,GSE314851,GSE314851,Targeting Modulated Vascular Smooth Muscle Cells GSM9414359,GSE314851,GSE314851,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,coronary artery disease,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1418,17943,counts,pixel,4.508950280735906,platform_constant,True,H&E,4.508950280735906,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41610194,10.1126/science.adx1736,GSM9414359,,,train,hesrt,samples/GSE314851/GSM9414359,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9416128,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3740,18085,counts,pixel,0.5315021153078575,platform_constant,True,H&E,0.5315021153078575,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416128,,,train,hesrt,samples/GSE314910/GSM9416128,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.2, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9416129,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,No Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4137,18085,counts,pixel,0.7886055102201678,platform_constant,True,H&E,0.7886055102201678,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416129,,,train,hesrt,samples/GSE314910/GSM9416129,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9416130,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,No Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4302,18085,counts,pixel,1.312048535692803,platform_constant,True,H&E,1.312048535692803,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416130,,,train,hesrt,samples/GSE314910/GSM9416130,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9416130,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,No Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4302,18085,counts,pixel,1.3120485356928033,platform_constant,True,H&E,1.3120485356928033,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416130,,,train,hesrt,samples/GSE314910/GSM9416130,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9416131,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,No Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4090,18085,counts,pixel,0.7880199325893243,platform_constant,True,H&E,0.7880199325893243,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416131,,,train,hesrt,samples/GSE314910/GSM9416131,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9416132,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,No Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1800,18085,counts,pixel,1.3092093204052448,platform_constant,True,H&E,1.3092093204052448,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416132,,,train,hesrt,samples/GSE314910/GSM9416132,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9416133,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,cardiac sarcoidosis,No Immunosuppression,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4974,18085,counts,pixel,1.010307195245044,platform_constant,True,H&E,1.010307195245044,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9416133,,,train,hesrt,samples/GSE314910/GSM9416133,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.51, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -10033,52 +10033,52 @@ GSM9416139,GSE314910,GSE314910,Spatial transcriptomic signatures of cardiac sarc GSM9422182,GSE315151,GSE315151,A Spatiotemporal Cell Atlas of the Developing Rat Tooth Germ Reveals Iron-Deficiency Induced Ameloblast Dysregulation,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,oral cavity,luna,UBERON:0001091,calcareous tooth,tooth,primary tissue,MONDO:0001356;MONDO:0001639,iron deficiency anemia;deficiency anemia,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,4357,28476,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9422182,,,train,sda-all,samples/GSE315151/GSM9422182,sda-tissue-disease-2.4,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.77, ""life_stage"": 1.0}",, GSM9422183,GSE315151,GSE315151,A Spatiotemporal Cell Atlas of the Developing Rat Tooth Germ Reveals Iron-Deficiency Induced Ameloblast Dysregulation,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,oral cavity,luna,UBERON:0001091,calcareous tooth,tooth,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,6180,30075,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9422183,,,train,sda-all,samples/GSE315151/GSM9422183,sda-tissue-disease-2.4,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.9400000000000001, ""life_stage"": 0.99}",, GSM9423409,GSE315233,GSE315233,A Single-Cell Bioprinting Approach with Subcellular Resolution to Reconstruct Native Cellular Microenvironments and Interrogate Spatial Biology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Engineered in vitro model,engineered tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,430490,18085,counts,um,1.0,verified,True,H&E,2.290404598293279,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42281981,,GSM9423409,,,train,sda-all,samples/GSE315233/GSM9423409,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.98, ""disease_status"": 0.33, ""uberon"": 0.73, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9423410,GSE315233,GSE315233,A Single-Cell Bioprinting Approach with Subcellular Resolution to Reconstruct Native Cellular Microenvironments and Interrogate Spatial Biology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Engineered in vitro model,engineered tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,366883,18085,counts,um,1.0,verified,True,H&E,2.636912110102253,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42281981,,GSM9423410,,,train,sda-all,samples/GSE315233/GSM9423410,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.75, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9423410,GSE315233,GSE315233,A Single-Cell Bioprinting Approach with Subcellular Resolution to Reconstruct Native Cellular Microenvironments and Interrogate Spatial Biology,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,Engineered in vitro model,engineered tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,366883,18085,counts,um,1.0,verified,True,H&E,2.6369121101022532,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42281981,,GSM9423410,,,train,sda-all,samples/GSE315233/GSM9423410,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.75, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433805,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,132370,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000045863144377,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433805,,,train,sda-all,samples/GSE315243/GSM9433805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433806,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2d1_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,314992,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999909420289855,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433806,,,train,sda-all,samples/GSE315243/GSM9433806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433807,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2d1_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,205308,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000111344404148,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433807,,,train,sda-all,samples/GSE315243/GSM9433807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433808,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K3_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,111065,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999840357598978,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433808,,,train,sda-all,samples/GSE315243/GSM9433808,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433809,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K3_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68763,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000171971017151,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433809,,,train,sda-all,samples/GSE315243/GSM9433809,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9433810,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,178694,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999849714457469,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433810,,,train,sda-all,samples/GSE315243/GSM9433810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.61, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9433810,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,178694,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998497144574694,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433810,,,train,sda-all,samples/GSE315243/GSM9433810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.61, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433811,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,66389,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999690891605989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433811,,,train,sda-all,samples/GSE315243/GSM9433811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.56, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM9433812,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K2_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,81600,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000090336568243,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433812,,,train,sda-all,samples/GSE315243/GSM9433812,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.78, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433813,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,127105,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000171703296703,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433813,,,train,sda-all,samples/GSE315243/GSM9433813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.7000000000000001, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9433814,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,91534,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999879807692308,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433814,,,train,sda-all,samples/GSE315243/GSM9433814,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.91, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9433814,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,91534,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998798076923084,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433814,,,train,sda-all,samples/GSE315243/GSM9433814,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.91, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433815,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,K2_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,138931,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499999059938332,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433815,,,train,sda-all,samples/GSE315243/GSM9433815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.45, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM9433816,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,236220,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999912713306856,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433816,,,train,sda-all,samples/GSE315243/GSM9433816,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.98, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433817,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K3_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,107097,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999867272298254,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433817,,,train,sda-all,samples/GSE315243/GSM9433817,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433818,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,78357,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999778813259407,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433818,,,train,sda-all,samples/GSE315243/GSM9433818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433819,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,246550,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000019427032067,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433819,,,train,sda-all,samples/GSE315243/GSM9433819,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9433820,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2d1_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68215,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499976908866995,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433820,,,train,sda-all,samples/GSE315243/GSM9433820,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9433820,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2d1_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68215,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997690886699503,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433820,,,train,sda-all,samples/GSE315243/GSM9433820,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433821,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2d1_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,138970,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000245249896736,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433821,,,train,sda-all,samples/GSE315243/GSM9433821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433822,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0023370,neoplastic disease or syndrome,disease,luna,,K2_vehicle,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,587225,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103546466477,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433822,,,train,sda-all,samples/GSE315243/GSM9433822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433823,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K2d1_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,82082,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896935550365,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433823,,,train,sda-all,samples/GSE315243/GSM9433823,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 0.29, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433824,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0005070,neoplasm,disease,luna,,K2d1_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,219619,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103455410718,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433824,,,train,sda-all,samples/GSE315243/GSM9433824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.54, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation -GSM9433825,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2_vehicle,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,701989,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999988496226762,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433825,,,train,sda-all,samples/GSE315243/GSM9433825,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9433825,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K2_vehicle,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,701989,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999884962267627,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433825,,,train,sda-all,samples/GSE315243/GSM9433825,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433826,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,K2_MRTX1133,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,285151,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999884287454324,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433826,,,train,sda-all,samples/GSE315243/GSM9433826,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.47000000000000003, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation -GSM9433827,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,K2_MRTX1133,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,468761,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999848860888379,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433827,,,train,sda-all,samples/GSE315243/GSM9433827,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9433828,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,K2_MRTX1133,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,594930,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999908594549797,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433828,,,train,sda-all,samples/GSE315243/GSM9433828,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.51, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation +GSM9433827,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,K2_MRTX1133,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,468761,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998488608883795,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433827,,,train,sda-all,samples/GSE315243/GSM9433827,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.67, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9433828,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,K2_MRTX1133,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,594930,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999085945497973,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433828,,,train,sda-all,samples/GSE315243/GSM9433828,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.51, ""disease_status"": 0.43, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM9433829,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,K2_MRTX1133,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,335571,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000038189594972,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433829,,,train,sda-all,samples/GSE315243/GSM9433829,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.75, ""disease_status"": 0.51, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433830,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K3_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,790847,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000059910243562,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433830,,,train,sda-all,samples/GSE315243/GSM9433830,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433831,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K3_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,531738,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000005447335164,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433831,,,train,sda-all,samples/GSE315243/GSM9433831,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433832,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,,,normal,luna,,K4_ctrl,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,557782,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000034468495794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433832,,,train,sda-all,samples/GSE315243/GSM9433832,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9433833,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,623758,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092661230541,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433833,,,train,sda-all,samples/GSE315243/GSM9433833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.81, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9433834,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1234164,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999907338769458,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433834,,,train,sda-all,samples/GSE315243/GSM9433834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.55, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM9433834,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1234164,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999073387694587,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433834,,,train,sda-all,samples/GSE315243/GSM9433834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.55, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM9433835,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,715372,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999939995636047,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433835,,,train,sda-all,samples/GSE315243/GSM9433835,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.65, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9433836,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,396241,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999914675767918,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433836,,,train,sda-all,samples/GSE315243/GSM9433836,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.54, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation GSM9433837,GSE315243,GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,primary tissue,MONDO:0005070,neoplasm,disease,luna,,K3_shp53,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,340164,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000031855249746,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41990751,,GSM9433837,,,train,sda-all,samples/GSE315243/GSM9433837,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.62, ""disease_status"": 0.5700000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9423568,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7403,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000044164409375,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423568,,,train,sda-all,samples/GSE315246/GSM9423568,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9423569,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7194,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000235682300259,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423569,,,train,sda-all,samples/GSE315246/GSM9423569,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9423570,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7953,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999852871939736,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41610194,,GSM9423570,,,train,sda-all,samples/GSE315246/GSM9423570,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9423571,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8080,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845233182005,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41610194,,GSM9423571,,,train,sda-all,samples/GSE315246/GSM9423571,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9423571,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8080,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998452331820054,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41610194,,GSM9423571,,,train,sda-all,samples/GSE315246/GSM9423571,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9423572,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10244,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423572,,,train,sda-all,samples/GSE315246/GSM9423572,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9423573,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10288,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499967461296068,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423573,,,train,sda-all,samples/GSE315246/GSM9423573,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9423574,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11120,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499979332010582,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423574,,,train,sda-all,samples/GSE315246/GSM9423574,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9423575,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19051,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068832599119,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423575,,,train,sda-all,samples/GSE315246/GSM9423575,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9423576,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19268,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000172239573765,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423576,,,train,sda-all,samples/GSE315246/GSM9423576,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9423577,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17373,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845233182005,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423577,,,train,sda-all,samples/GSE315246/GSM9423577,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9423577,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17373,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998452331820054,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423577,,,train,sda-all,samples/GSE315246/GSM9423577,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9423578,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10685,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103512900976,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423578,,,train,sda-all,samples/GSE315246/GSM9423578,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9423579,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10580,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999720226175049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423579,,,train,sda-all,samples/GSE315246/GSM9423579,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9423579,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,10580,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997202261750495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423579,,,train,sda-all,samples/GSE315246/GSM9423579,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9423580,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6004,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999852576954829,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423580,,,train,sda-all,samples/GSE315246/GSM9423580,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9423581,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5878,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948524365133,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423581,,,train,sda-all,samples/GSE315246/GSM9423581,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9423582,GSE315246,GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,MONDO:0005311,atherosclerosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11029,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999915438965724,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41610194,,GSM9423582,,,train,sda-all,samples/GSE315246/GSM9423582,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -10115,12 +10115,12 @@ GSM9427185,GSE315411,GSE315411,Fishing with Two Lines: A Hybrid Approach to Spat GSM10044212,GSE315416,GSE315416,A High-Resolution Stereo-seq Spatial Transcriptomic Dataset of the Bovine Liver,Bos taurus,9913,domestic cattle,Bos taurus,9913,,False,False,GEO organism field,Bos taurus,,liver,luna,UBERON:0002107,liver,Cattle Liver,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo-seq,,,bin,128906,19045,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,42737743,,GSM10044212,,,train,sda-all,samples/GSE315416/GSM10044212,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.97, ""life_stage"": 0.79}",, GSM9427230,GSE315416,GSE315416,A High-Resolution Stereo-seq Spatial Transcriptomic Dataset of the Bovine Liver,Bos taurus,9913,domestic cattle,Bos taurus,9913,,False,False,GEO organism field,Bos taurus,,liver,luna,UBERON:0002107,liver,Cattle Liver,primary tissue,,,normal,luna,,,adult,luna,adult,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo-seq,,,bin,111539,18680,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,42737743,,GSM9427230,,,train,sda-all,samples/GSE315416/GSM9427230,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.98, ""life_stage"": 0.84}",, GSM9428101,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,172225,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000074812393536,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428101,,,train,sda-all,samples/GSE315435/GSM9428101,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.42}",life_stage,low_confidence_annotation -GSM9428102,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,244107,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999988496226762,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428102,,,train,sda-all,samples/GSE315435/GSM9428102,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.66}",, +GSM9428102,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,244107,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999884962267627,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428102,,,train,sda-all,samples/GSE315435/GSM9428102,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.66}",, GSM9428103,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,329957,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428103,,,train,sda-all,samples/GSE315435/GSM9428103,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.81}",, GSM9428104,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,111807,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999972401611746,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428104,,,train,sda-all,samples/GSE315435/GSM9428104,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.89}",, GSM9428105,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,304788,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000071195567751,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428105,,,train,sda-all,samples/GSE315435/GSM9428105,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 0.71}",, GSM9428106,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,kidney,luna,UBERON:0002113,kidney,CD1 mouse fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mKidney_100g,xenium-3.0.0.15,cell,328589,13098,counts,um,1.0,verified,True,fluorescence: DAPI,0.500001379995584,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428106,,,train,sda-all,samples/GSE315435/GSM9428106,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.54}",life_stage,low_confidence_annotation -GSM9428107,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,human fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_91g,xenium-3.1.0.4,cell,338916,9691,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999975666731555,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428107,,,train,sda-all,samples/GSE315435/GSM9428107,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9428107,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,human fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_91g,xenium-3.1.0.4,cell,338916,9691,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999756667315554,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428107,,,train,sda-all,samples/GSE315435/GSM9428107,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9428108,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,human fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_91g,xenium-3.1.0.4,cell,188382,9691,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000038803807947,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428108,,,train,sda-all,samples/GSE315435/GSM9428108,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9428109,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,human fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_91g,xenium-3.1.0.4,cell,288214,9691,counts,um,1.0,verified,True,fluorescence: DAPI,0.500008409232043,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428109,,,train,sda-all,samples/GSE315435/GSM9428109,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9428110,GSE315435,GSE315435,Rhythmic nephron formation in the developing kidney,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,human fetal kidney,primary tissue,,,normal,luna,,wild-type,fetal,luna,fetal,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,hMulti_91g,xenium-3.1.0.4,cell,295662,9691,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000082781456954,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9428110,,,train,sda-all,samples/GSE315435/GSM9428110,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -10333,27 +10333,27 @@ GSM9439783,GSE315907,GSE315907,p53 maintains healthy aging,Mus musculus,10090,ho GSM9439784,GSE315907,GSE315907,p53 maintains healthy aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,whole liver,primary tissue,,,normal,luna,,Veh,adult,luna,adult,Young,female,Female,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,1037,1010,counts,pixel,,unresolved,True,fluorescence: CosMx multichannel composite,,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9439784,,,train,sda-all,samples/GSE315907/GSM9439784,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 0.45}",life_stage,low_confidence_annotation GSM9439785,GSE315907,GSE315907,p53 maintains healthy aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,whole liver,primary tissue,,,normal,luna,,Veh,adult,luna,adult,Young,female,Female,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,902,1010,counts,pixel,,unresolved,True,fluorescence: CosMx multichannel composite,,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9439785,,,train,sda-all,samples/GSE315907/GSM9439785,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 0.53}",life_stage,low_confidence_annotation GSM9439786,GSE315907,GSE315907,p53 maintains healthy aging,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,whole liver,primary tissue,,,normal,luna,,Veh,adult,luna,adult,Young,female,Female,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,1017,1010,counts,pixel,,unresolved,True,fluorescence: CosMx multichannel composite,,VERIFIED,VERIFIED,ABSENT,,,VERIFIED,PASS,,,,,GSM9439786,,,train,sda-all,samples/GSE315907/GSM9439786,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 0.34}",life_stage,low_confidence_annotation -GSM9450633,GSE316346,GSE316346,TGFβ1 and Oncostatin M promotes the organization of two distinct stromal niches controlling different EMT states [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0002616,mesenchymal cell neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,415565,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896839151604,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9450633,,,train,sda-all,samples/GSE316346/GSM9450633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9450633,GSE316346,GSE316346,TGFβ1 and Oncostatin M promotes the organization of two distinct stromal niches controlling different EMT states [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0002616,mesenchymal cell neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,415565,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998968391516047,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9450633,,,train,sda-all,samples/GSE316346/GSM9450633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9927082,GSE316346,GSE316346,TGFβ1 and Oncostatin M promotes the organization of two distinct stromal niches controlling different EMT states [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0002616,mesenchymal cell neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,821319,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999868987202118,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927082,,,train,sda-all,samples/GSE316346/GSM9927082,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.49, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9451441,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105;MONDO:0018975,melanoma;neurofibromatosis type 1,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19297,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451441,,,train,sda-all,samples/GSE316387/GSM9451441,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9451442,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,136728,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000038076588338,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451442,,,train,sda-all,samples/GSE316387/GSM9451442,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.92, ""disease_status"": 0.99, ""uberon"": 0.78, ""life_stage"": 1.0}",, GSM9451444,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,140949,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961908493318,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451444,,,train,sda-all,samples/GSE316387/GSM9451444,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.84, ""disease_status"": 1.0, ""uberon"": 0.8, ""life_stage"": 1.0}",, -GSM9451445,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86282,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999918339793563,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451445,,,train,sda-all,samples/GSE316387/GSM9451445,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.87, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9451445,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86282,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999183397935637,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451445,,,train,sda-all,samples/GSE316387/GSM9451445,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.87, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9451447,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102723,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000038133007931,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451447,,,train,sda-all,samples/GSE316387/GSM9451447,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.88, ""disease_status"": 0.99, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, -GSM9451448,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,101400,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989109600976,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451448,,,train,sda-all,samples/GSE316387/GSM9451448,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.88, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM9451448,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,101400,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999891096009763,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451448,,,train,sda-all,samples/GSE316387/GSM9451448,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.88, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9451450,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,106573,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999901973598222,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451450,,,train,sda-all,samples/GSE316387/GSM9451450,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.88, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9451453,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,73412,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000120606478291,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451453,,,train,sda-all,samples/GSE316387/GSM9451453,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.93, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9451454,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,44029,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000080201649862,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451454,,,train,sda-all,samples/GSE316387/GSM9451454,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9451455,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,17548,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068194217131,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451455,,,train,sda-all,samples/GSE316387/GSM9451455,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.87, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, -GSM9451456,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47962,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999897271531885,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451456,,,train,sda-all,samples/GSE316387/GSM9451456,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.85, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9451456,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47962,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998972715318857,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451456,,,train,sda-all,samples/GSE316387/GSM9451456,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.85, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9451457,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27031,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000485685071575,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451457,,,train,sda-all,samples/GSE316387/GSM9451457,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.88, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 1.0}",, GSM9451458,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57936,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000029550827423,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451458,,,train,sda-all,samples/GSE316387/GSM9451458,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.88, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9451459,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,103598,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999992611419788,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451459,,,train,sda-all,samples/GSE316387/GSM9451459,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.89, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM9451459,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,103598,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999926114197885,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451459,,,train,sda-all,samples/GSE316387/GSM9451459,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.89, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9451460,GSE316387,GSE316387,Xenium Analysis of Melanoma FFPE,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0002097,skin of body,Melanoma,tumour tissue,MONDO:0005105,melanoma,disease,luna,,No_Treatment,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52716,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000054456739567,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9451460,,,train,sda-all,samples/GSE316387/GSM9451460,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.85, ""disease_status"": 1.0, ""uberon"": 0.86, ""life_stage"": 1.0}",, -GSM9451525,GSE316390,GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,725,18085,counts,pixel,3.908048332939884,platform_constant,True,H&E,3.908048332939884,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9451525,,,train,hesrt,samples/GSE316390/GSM9451525,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9451525,GSE316390,GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,725,18085,counts,pixel,3.9080483329398836,platform_constant,True,H&E,3.9080483329398836,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9451525,,,train,hesrt,samples/GSE316390/GSM9451525,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9451526,GSE316390,GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4261,18085,counts,pixel,3.4866204968552656,platform_constant,True,H&E,3.4866204968552656,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,,,GSM9451526,,,train,hesrt,samples/GSE316390/GSM9451526,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 0.73, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9451527,GSE316390,GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4779,18085,counts,pixel,3.5017502136341125,platform_constant,True,H&E,3.5017502136341125,HESRT_HUMAN_REVIEW,,,image_partial_coverage,,human_visual_review,,,,,,GSM9451527,,,train,hesrt,samples/GSE316390/GSM9451527,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9451528,GSE316390,GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3146,18085,counts,pixel,3.908048332939884,platform_constant,True,H&E,3.908048332939884,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9451528,,,train,hesrt,samples/GSE316390/GSM9451528,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9451528,GSE316390,GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,human coronary artery,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3146,18085,counts,pixel,3.9080483329398836,platform_constant,True,H&E,3.9080483329398836,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,,,GSM9451528,,,train,hesrt,samples/GSE316390/GSM9451528,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9456973,GSE316618,GSE316618,Clonal memory of colitis accumulates and promotes tumor growth [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0000397,colonic epithelium,colon,tumour tissue,MONDO:0000527,colon adenoma,disease,luna,adenoma,control,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,99258,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41882356,,GSM9456973,,,train,hesrt,samples/GSE316618/GSM9456973,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.71, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9456974,GSE316618,GSE316618,Clonal memory of colitis accumulates and promotes tumor growth [Visium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0000397,colonic epithelium,colon,tumour tissue,MONDO:0000527;MONDO:0005292,colon adenoma;colitis,disease,luna,adenoma,colitis recovered,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,99154,19059,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41882356,,GSM9456974,,,train,hesrt,samples/GSE316618/GSM9456974,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9457930,GSE316662,GSE316662,Spatial Transcriptomic Mapping of Postnatal Mouse Uterine Development,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,uterus,luna,UBERON:0000995,uterus,Uterus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mMulti_480g,xenium-3.0.0.15,cell,139806,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137249519626,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42406946,,GSM9457930,,,train,sda-all,samples/GSE316662/GSM9457930,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -10372,13 +10372,13 @@ GSM9460279,GSE316789,GSE316789,A long-read-compatible spatial barcoding system: GSM9460280,GSE316789,GSE316789,A long-read-compatible spatial barcoding system: enables isoform-resolved spatial heterogeneity at near-single-cell scale.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,embryo (whole),luna,UBERON:0000922,embryo,Embryo,whole embryo/organism,,,normal,luna,,Wild type,embryonic,luna,embryonic,,unknown,,,,,,Other,release v3,not named in GEO,sequencing-based,other,,,bin,51277,54752,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9460280,,,train,sda-all,samples/GSE316789/GSM9460280,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.53, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM9460386,GSE316800,GSE316800,Stretching inhibits tumor growth in MMTV-PYMT via a direct mechanical effect,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,breast,luna,UBERON:0001911,mammary gland,mammary tumor,xenograft,MONDO:0005070,neoplasm,disease,luna,,Stretch and No Stretch,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1216979,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000076166434541,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9460386,,,train,sda-all,samples/GSE316800/GSM9460386,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9462339,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,adult,age rule: bare number read as years,adult,50,male,Male,GSE316917:GBM024,GBM024,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,467803,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499996522222995,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462339,,,train,sda-all,samples/GSE316917/GSM9462339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9462340,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,adult,age rule: bare number read as years,adult,50,male,Male,GSE316917:GBM024,GBM024,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,366739,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999985090648854,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462340,,,train,sda-all,samples/GSE316917/GSM9462340,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9462340,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,adult,age rule: bare number read as years,adult,50,male,Male,GSE316917:GBM024,GBM024,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,366739,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999850906488547,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462340,,,train,sda-all,samples/GSE316917/GSM9462340,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9462341,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,adult,age rule: bare number read as years,adult,50,male,Male,GSE316917:GBM024,GBM024,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54166,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941023826374,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462341,,,train,sda-all,samples/GSE316917/GSM9462341,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9462342,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,adult,age rule: bare number read as years,adult,50,male,Male,GSE316917:GBM024,GBM024,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,711466,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999938662348496,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462342,,,train,sda-all,samples/GSE316917/GSM9462342,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9462342,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,adult,age rule: bare number read as years,adult,50,male,Male,GSE316917:GBM024,GBM024,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,711466,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999386623484965,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462342,,,train,sda-all,samples/GSE316917/GSM9462342,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9462343,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,aged,age rule: bare number read as years,aged,68,male,Male,GSE316917:GBM030,GBM030,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,213970,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000185935046689,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462343,,,train,sda-all,samples/GSE316917/GSM9462343,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9462344,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,aged,age rule: bare number read as years,aged,68,male,Male,GSE316917:GBM026,GBM026,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,80375,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896694214877,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462344,,,train,sda-all,samples/GSE316917/GSM9462344,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM9462345,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,aged,age rule: bare number read as years,aged,65,male,Male,GSE316917:GBM034,GBM034,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,163126,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000028191249436,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462345,,,train,sda-all,samples/GSE316917/GSM9462345,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9462346,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,aged,age rule: bare number read as years,aged,68,male,Male,GSE316917:GBM026,GBM026,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102625,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999963046177496,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462346,,,train,sda-all,samples/GSE316917/GSM9462346,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9462346,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,aged,age rule: bare number read as years,aged,68,male,Male,GSE316917:GBM026,GBM026,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102625,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999630461774963,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462346,,,train,sda-all,samples/GSE316917/GSM9462346,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9462347,GSE316917,GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,aged,age rule: bare number read as years,aged,73,male,Male,GSE316917:GBM025,GBM025,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,117714,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999972427484283,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9462347,,,train,sda-all,samples/GSE316917/GSM9462347,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9464516,GSE317062+GSE317063,GSE317062,"Single-nucleus and Spatial Transcriptomics Reveal Intestinal Cellular Heterogeneity, Differentiation, and Cell Communication Mechanisms in SAP-induced Intestinal Injury [Spatial Transcriptomics]",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,25224,27439,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41694378,,GSM9464516,,,train,sda-all,samples/GSE317062/GSM9464516,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9464517,GSE317062+GSE317063,GSE317062,"Single-nucleus and Spatial Transcriptomics Reveal Intestinal Cellular Heterogeneity, Differentiation, and Cell Communication Mechanisms in SAP-induced Intestinal Injury [Spatial Transcriptomics]",Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,disease,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,15207,25921,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,41694378,,GSM9464517,,,train,sda-all,samples/GSE317062/GSM9464517,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -10434,12 +10434,12 @@ GSM9485176,GSE318039,GSE318039,Spatial Transcriptomics Reveals Compartment-Speci GSM9485177,GSE318039,GSE318039,Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1945,36601,counts,um,1.0,verified,True,H&E,4.654540507263224,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42351239,,GSM9485177,,,train,sda-all,samples/GSE318039/GSM9485177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9485178,GSE318039,GSE318039,Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1314,36601,counts,um,1.0,verified,True,H&E,4.471264751788277,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42351239,,GSM9485178,,,train,sda-all,samples/GSE318039/GSM9485178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9485179,GSE318039,GSE318039,Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0005002,chronic obstructive pulmonary disease,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2867,36601,counts,um,1.0,verified,True,H&E,4.669789570079985,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42351239,,GSM9485179,,,train,sda-all,samples/GSE318039/GSM9485179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, -GSM9489187,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,Pregnant mice were intraperitoneally administered 200 µL of 0.1% BSA in PBS 48 hours prior to collection.,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.0.10,cell,68239,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999845594290419,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489187,,,train,sda-all,samples/GSE318202/GSM9489187,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.44, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation +GSM9489187,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,Pregnant mice were intraperitoneally administered 200 µL of 0.1% BSA in PBS 48 hours prior to collection.,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.0.10,cell,68239,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998455942904196,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489187,,,train,sda-all,samples/GSE318202/GSM9489187,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.44, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9489188,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,Pregnant mice were intraperitoneally administered 200 µL of 0.1% BSA in PBS 48 hours prior to collection.,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.0.10,cell,60038,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982827311444,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489188,,,train,sda-all,samples/GSE318202/GSM9489188,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.59, ""uberon"": 0.48, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation GSM9489189,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,Pregnant mice were intraperitoneally administered 200 µL of 0.1% BSA in PBS 48 hours prior to collection.,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.0.10,cell,65647,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000325922876355,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489189,,,train,sda-all,samples/GSE318202/GSM9489189,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM9489190,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,CD1,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,88276,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999837892006602,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489190,,,train,sda-all,samples/GSE318202/GSM9489190,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.42, ""life_stage"": 0.86}",uberon,low_confidence_annotation GSM9489191,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,CD1,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,90497,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500027960913586,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489191,,,train,sda-all,samples/GSE318202/GSM9489191,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.56, ""life_stage"": 0.98}",uberon,low_confidence_annotation -GSM9489192,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,CD1,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,83672,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999720226175049,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489192,,,train,sda-all,samples/GSE318202/GSM9489192,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.33, ""life_stage"": 0.99}",uberon,low_confidence_annotation +GSM9489192,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,CD1,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,83672,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997202261750495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489192,,,train,sda-all,samples/GSE318202/GSM9489192,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.33, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM9489193,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (embryonic coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,CD1,embryonic,luna,embryonic,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-3.1.0.4,cell,81207,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.50000589066918,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489193,,,train,sda-all,samples/GSE318202/GSM9489193,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.7000000000000001, ""life_stage"": 0.99}",, GSM9489194,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (postnatal coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,C57BL/6,neonatal or infant,luna,neonatal or infant,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.0.10,cell,128498,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999793255536157,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489194,,,train,sda-all,samples/GSE318202/GSM9489194,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.48, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM9489195,GSE318202,GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0002285,telencephalic ventricle,Brain (postnatal coronal brain sections containing the lateral ventricles),primary tissue,,,normal,luna,,C57BL/6,neonatal or infant,luna,neonatal or infant,,unknown,,,,fixed frozen,fixed frozen,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.0.10,cell,98395,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500012636706185,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42314674,,GSM9489195,,,train,sda-all,samples/GSE318202/GSM9489195,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.47000000000000003, ""life_stage"": 0.99}",uberon,low_confidence_annotation @@ -10455,7 +10455,7 @@ GSM9496851,GSE318507,GSE318507,Evaluating exon skipping in the central nervous s GSM9496852,GSE318507,GSE318507,Evaluating exon skipping in the central nervous system in Duchenne muscular dystrophy using spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0019056,neuromuscular disease,disease,mondo_predicate,,,adult,age rule: postnatal day,adult,P98,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,329560,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000079729557341,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42542656,,GSM9496852,,,train,sda-all,samples/GSE318507/GSM9496852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9496853,GSE318507,GSE318507,Evaluating exon skipping in the central nervous system in Duchenne muscular dystrophy using spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,not stated,luna,,,adult,age rule: postnatal day,adult,P98,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,147850,297,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000109346224677,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42542656,,GSM9496853,,,train,sda-all,samples/GSE318507/GSM9496853,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.23, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9497186,GSE318532,GSE318532,Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,control,adult,age rule: age with unit,not stated,6–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1888,32285,counts,pixel,4.001929342701519,platform_constant,True,H&E,4.001929342701519,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41778850,,GSM9497186,,,train,hesrt,samples/GSE318532/GSM9497186,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9497187,GSE318532,GSE318532,Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,metastasis,MONDO:0005070,neoplasm,disease,luna,,lung metastasis,adult,age rule: age with unit,not stated,6–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1110,32285,counts,pixel,3.987792048121973,platform_constant,True,H&E,3.987792048121973,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41778850,,GSM9497187,,,train,hesrt,samples/GSE318532/GSM9497187,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9497187,GSE318532,GSE318532,Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,metastasis,MONDO:0005070,neoplasm,disease,luna,,lung metastasis,adult,age rule: age with unit,not stated,6–8 weeks,female,female,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1110,32285,counts,pixel,3.9877920481219724,platform_constant,True,H&E,3.9877920481219724,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41778850,,GSM9497187,,,train,hesrt,samples/GSE318532/GSM9497187,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9497611,GSE318562,GSE318562,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor section (IDH wildtype Glioblastoma),tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4031,36601,counts,um,1.0,verified,True,H&E,5.123420547809209,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9497611,,,train,sda-all,samples/GSE318562/GSM9497611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9497612,GSE318562,GSE318562,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor section (IDH wildtype Glioblastoma),tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3018,36601,counts,um,1.0,verified,True,H&E,5.1192507545040975,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9497612,,,train,sda-all,samples/GSE318562/GSM9497612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9497613,GSE318562,GSE318562,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor section (IDH wildtype Glioblastoma),tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2522,36601,counts,um,1.0,verified,True,H&E,5.226988768629871,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9497613,,,train,sda-all,samples/GSE318562/GSM9497613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -10564,13 +10564,13 @@ GSM9514159,GSE319236,GSE319236,Spatially resolved maternal and fetal cell contri GSM9514160,GSE319236,GSE319236,Spatially resolved maternal and fetal cell contributions to severe Preeclampsia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,Chorioamniotic membranes,primary tissue,MONDO:0001641,severe pre-eclampsia,disease,luna,Preeclamptic,,not stated,luna,not stated,,unknown,,GSE319236:FMM,FMM,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2097,36601,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9514160,,,test,sda-all,samples/GSE319236/GSM9514160,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.39, ""uberon"": 0.62, ""life_stage"": 0.91}",disease_status,low_confidence_annotation GSM9514161,GSE319236,GSE319236,Spatially resolved maternal and fetal cell contributions to severe Preeclampsia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,uterus,luna,UBERON:0001296,myometrium,Myometrium,primary tissue,MONDO:0001641,severe pre-eclampsia,disease,mondo_predicate,Preeclamptic,,not stated,luna,not stated,,unknown,,GSE319236:FMM,FMM,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1573,36601,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9514161,,,test,sda-all,samples/GSE319236/GSM9514161,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9514162,GSE319236,GSE319236,Spatially resolved maternal and fetal cell contributions to severe Preeclampsia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,MONDO:0001641,severe pre-eclampsia,disease,luna,Preeclamptic,,not stated,luna,not stated,,unknown,,GSE319236:FMM,FMM,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3461,36601,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9514162,,,test,sda-all,samples/GSE319236/GSM9514162,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 1.0, ""life_stage"": 0.8}",disease_status,low_confidence_annotation -GSM9514750,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,44470,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514750,,,train,sda-all,samples/GSE319277/GSM9514750,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.44, ""disease_status"": 0.27, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation -GSM9514751,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2485,45656,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9514751,,,train,sda-all,samples/GSE319277/GSM9514751,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.18, ""disease_status"": 0.2, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation -GSM9514752,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,89694,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514752,,,train,sda-all,samples/GSE319277/GSM9514752,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.39, ""disease_status"": 0.36, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind;disease_status,feature_species_differs;low_confidence_annotation -GSM9514753,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Mouse liver,primary tissue,,,perturbation,luna,,Ros-K46a26-LSL-Cas9-2A-EGFP,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,22666,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514753,,,train,sda-all,samples/GSE319277/GSM9514753,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9514754,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Mouse liver,primary tissue,,,perturbation,luna,,Rosa26-LSL-Cas9-2A-EGFP,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2431,39741,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514754,,,train,sda-all,samples/GSE319277/GSM9514754,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9514757,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,disease,luna,,C57BL-6J,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2500,19975,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514757,,,train,sda-all,samples/GSE319277/GSM9514757,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.64, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9514758,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,2490,46872,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514758,,,train,sda-all,samples/GSE319277/GSM9514758,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.53, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,feature_species_differs;low_confidence_annotation +GSM9514750,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,44470,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514750,,,train,sda-all,samples/GSE319277/GSM9514750,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.44, ""disease_status"": 0.27, ""uberon"": 0.99, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation +GSM9514751,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2485,45656,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9514751,,,train,sda-all,samples/GSE319277/GSM9514751,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.18, ""disease_status"": 0.2, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind;disease_status,low_confidence_annotation +GSM9514752,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,89694,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514752,,,train,sda-all,samples/GSE319277/GSM9514752,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.39, ""disease_status"": 0.36, ""uberon"": 0.98, ""life_stage"": 1.0}",sample_kind;disease_status,feature_species_differs;low_confidence_annotation +GSM9514753,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,liver,luna,UBERON:0002107,liver,Mouse liver,primary tissue,,,perturbation,luna,,Ros-K46a26-LSL-Cas9-2A-EGFP,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,22666,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514753,,,train,sda-all,samples/GSE319277/GSM9514753,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9514754,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Mouse liver,primary tissue,,,perturbation,luna,,Rosa26-LSL-Cas9-2A-EGFP,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2431,39741,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514754,,,train,sda-all,samples/GSE319277/GSM9514754,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9514757,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,disease,luna,,C57BL-6J,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2500,19975,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514757,,,train,sda-all,samples/GSE319277/GSM9514757,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.64, ""disease_status"": 0.41000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9514758,GSE319277,GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,lung,luna,UBERON:0002048,lung,Mouse lung,cell culture,,,perturbation,luna,,NSG,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,2490,46872,unknown,unstated,,unresolved,False,,,WITHHELD,,,units_unstated;hesrt_review_fail,,VERIFIED,,,,,,GSM9514758,,,train,sda-all,samples/GSE319277/GSM9514758,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.53, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 1.0}",sample_kind;disease_status,feature_species_differs;low_confidence_annotation GSM9519394,GSE319536,GSE319536,A Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities and Immune Architecture,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Bladder,tumour tissue,MONDO:0004986,urinary bladder carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8487,18085,counts,um,1.0,verified,True,H&E,6.973807809244113,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9519394,,,train,sda-all,samples/GSE319536/GSM9519394,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9519395,GSE319536,GSE319536,A Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities and Immune Architecture,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Bladder,tumour tissue,MONDO:0004986,urinary bladder carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2087,18085,counts,um,1.0,verified,True,H&E,3.9804452126787697,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9519395,,,train,sda-all,samples/GSE319536/GSM9519395,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9519396,GSE319536,GSE319536,A Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities and Immune Architecture,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bladder,luna,UBERON:0001255,urinary bladder,Bladder,tumour tissue,MONDO:0004986,urinary bladder carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2865,18085,counts,um,1.0,verified,True,H&E,4.407033869765732,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9519396,,,train,sda-all,samples/GSE319536/GSM9519396,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, @@ -10596,22 +10596,22 @@ GSM9519415,GSE319536,GSE319536,A Spatial Atlas of Muscle-Invasive Bladder Cancer GSM9521682,GSE319617,GSE319617,Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Fetal Liver,primary tissue,,,normal,luna,,,fetal,luna,fetal,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,500570,18132,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42086556,,GSM9521682,,,train,hesrt,samples/GSE319617/GSM9521682,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9521683,GSE319617,GSE319617,Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Fetal Liver,primary tissue,,,normal,luna,,,fetal,luna,fetal,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,10x Genomics Visium HD,,,bin,333667,18132,counts,pixel,,unresolved,True,H&E,,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42086556,,GSM9521683,,,train,hesrt,samples/GSE319617/GSM9521683,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.9500000000000001, ""life_stage"": 0.99}",, GSM9524129,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,138401,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000089694761826,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524129,,,train,sda-all,samples/GSE319706/GSM9524129,sda-tissue-disease-2.3,"{""organ"": 0.51, ""sample_kind"": 0.93, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM9524130,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,89487,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499985950070989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524130,,,train,sda-all,samples/GSE319706/GSM9524130,sda-tissue-disease-2.3,"{""organ"": 0.61, ""sample_kind"": 0.87, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM9524130,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,89487,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998595007098906,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524130,,,train,sda-all,samples/GSE319706/GSM9524130,sda-tissue-disease-2.3,"{""organ"": 0.61, ""sample_kind"": 0.87, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9524131,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,134421,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000014785025726,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524131,,,train,sda-all,samples/GSE319706/GSM9524131,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 0.96, ""disease_status"": 0.99, ""uberon"": 0.84, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9524132,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,93717,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051741470048,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524132,,,train,sda-all,samples/GSE319706/GSM9524132,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM9524133,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,119929,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000044386577499,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524133,,,train,sda-all,samples/GSE319706/GSM9524133,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": 0.62, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM9524134,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,101770,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999918706397067,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524134,,,train,sda-all,samples/GSE319706/GSM9524134,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM9524134,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,101770,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999187063970674,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524134,,,train,sda-all,samples/GSE319706/GSM9524134,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9524135,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,110534,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944310081466,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524135,,,train,sda-all,samples/GSE319706/GSM9524135,sda-tissue-disease-2.3,"{""organ"": 0.68, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9524136,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,skin,luna,UBERON:0002097,skin of body,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,134966,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999972401611746,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524136,,,train,sda-all,samples/GSE319706/GSM9524136,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 0.9400000000000001, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9524137,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,112553,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499997043169722,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524137,,,train,sda-all,samples/GSE319706/GSM9524137,sda-tissue-disease-2.3,"{""organ"": 0.48, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation +GSM9524137,GSE319706,GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,other,luna,,,YUMMER1.7 mouse melanoma tissue (C57BL/6J),tumour tissue,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,112553,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999704316972204,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9524137,,,train,sda-all,samples/GSE319706/GSM9524137,sda-tissue-disease-2.3,"{""organ"": 0.48, ""sample_kind"": 0.97, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9525785,GSE319755,GSE319755,Cytotoxic CD39+ tumor-associated NK cells respond to NKG2A blockade in lung cancer (10x Xenium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung adenocarcinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,NSCLC,,aged,age rule: bare number read as years,aged,69,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,142747,568,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000192702980473,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42247486,,GSM9525785,,,train,sda-all,samples/GSE319755/GSM9525785,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 0.98}",, GSM9525786,GSE319755,GSE319755,Cytotoxic CD39+ tumor-associated NK cells respond to NKG2A blockade in lung cancer (10x Xenium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,adjacent lung tissue,primary tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,NSCLC,,aged,age rule: bare number read as years,aged,69,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,14187,568,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000043988269794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42247486,,GSM9525786,,,train,sda-all,samples/GSE319755/GSM9525786,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9525787,GSE319755,GSE319755,Cytotoxic CD39+ tumor-associated NK cells respond to NKG2A blockade in lung cancer (10x Xenium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,margin at lung adenocacinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,NSCLC,,aged,age rule: bare number read as years,aged,69,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,137993,568,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999781849912739,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42247486,,GSM9525787,,,train,sda-all,samples/GSE319755/GSM9525787,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, +GSM9525787,GSE319755,GSE319755,Cytotoxic CD39+ tumor-associated NK cells respond to NKG2A blockade in lung cancer (10x Xenium),Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,margin at lung adenocacinoma,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,NSCLC,,aged,age rule: bare number read as years,aged,69,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,137993,568,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997818499127394,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42247486,,GSM9525787,,,train,sda-all,samples/GSE319755/GSM9525787,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9525962,GSE319763,GSE319763,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human 5K Pan Tissue & Pathways Panel,xenium-4.0.1.0,cell,244374,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961795397983,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9525962,,,train,sda-all,samples/GSE319763/GSM9525962,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9525963,GSE319763,GSE319763,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human 5K Pan Tissue & Pathways Panel,xenium-4.0.1.0,cell,736414,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092798812176,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9525963,,,train,sda-all,samples/GSE319763/GSM9525963,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9525964,GSE319763,GSE319763,Inflammatory immune modulators of AML lung infiltration and respiratory failure,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0018874;MONDO:0005275,acute myeloid leukemia;lung disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,Xenium Human 5K Pan Tissue & Pathways Panel,xenium-4.0.1.0,cell,43810,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000132774696093,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9525964,,,train,sda-all,samples/GSE319763/GSM9525964,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9526110,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,16793,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000206334468172,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526110,,,train,sda-all,samples/GSE319771/GSM9526110,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9526111,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,43038,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999975646583215,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526111,,,train,sda-all,samples/GSE319771/GSM9526111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM9526111,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,43038,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999756465832157,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526111,,,train,sda-all,samples/GSE319771/GSM9526111,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.64, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9526112,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,30913,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941141848146,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526112,,,train,sda-all,samples/GSE319771/GSM9526112,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9526113,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,62383,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000137677833868,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526113,,,train,sda-all,samples/GSE319771/GSM9526113,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9526114,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,31891,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000011474205984,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526114,,,train,sda-all,samples/GSE319771/GSM9526114,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -10627,8 +10627,8 @@ GSM9526123,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory an GSM9526124,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,162196,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999961880282303,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526124,,,train,sda-all,samples/GSE319771/GSM9526124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9526125,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,155293,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000054763179672,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526125,,,train,sda-all,samples/GSE319771/GSM9526125,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.29, ""uberon"": 0.97, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9526126,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,42949,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000217730106344,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42206386,,GSM9526126,,,train,sda-all,samples/GSE319771/GSM9526126,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.32, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9526127,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,104611,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999959795993383,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526127,,,train,sda-all,samples/GSE319771/GSM9526127,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9527706,GSE319842,GSE319842,Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Cardiac Tissue,primary tissue,,,perturbation,luna,,alpha_MHC_MerCreMer_het,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1256,19465,counts,um,1.0,verified,True,H&E,6.97243340843418,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42102394,,GSM9527706,,,train,sda-all,samples/GSE319842/GSM9527706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9526127,GSE319771,GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0001707,cardiac sarcoidosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,104611,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999597959933834,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42206386,,GSM9526127,,,train,sda-all,samples/GSE319771/GSM9526127,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9527706,GSE319842,GSE319842,Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Cardiac Tissue,primary tissue,,,perturbation,luna,,alpha_MHC_MerCreMer_het,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1256,19465,counts,um,1.0,verified,True,H&E,6.9724334084341795,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42102394,,GSM9527706,,,train,sda-all,samples/GSE319842/GSM9527706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9527707,GSE319842,GSE319842,Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Cardiac Tissue,primary tissue,,,perturbation,luna,,alpha_MHC_MerCreMer_Het_TOP2B_LSL,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,924,19465,counts,um,1.0,verified,True,H&E,7.025396881618484,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42102394,,GSM9527707,,,train,sda-all,samples/GSE319842/GSM9527707,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9530208,GSE319949,GSE319949,Logistic regression for estimating functional effects with spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,12 days,male,Male,,,fresh frozen,Fresh frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,315533,819,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,42137981,,GSM9530208,,,train,sda-all,samples/GSE319949/GSM9530208,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9530209,GSE319949,GSE319949,Logistic regression for estimating functional effects with spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,neonatal or infant,luna,neonatal or infant,18 days,male,Male,,,fresh frozen,Fresh frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,292193,819,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,zero_count_observations,VERIFIED,,,,42137981,,GSM9530209,,,train,sda-all,samples/GSE319949/GSM9530209,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -10654,9 +10654,9 @@ GSM9532671,GSE320041+GSE320042,GSE320041,High-resolution and noninvasive profili GSM9535604,GSE320142,GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Primary lung cancer,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,untreated,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,273523,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499986740526843,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41998001,,GSM9535604,,,train,sda-all,samples/GSE320142/GSM9535604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9535605,GSE320142,GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Primary lung cancer,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,untreated,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,545933,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000007924935016,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41998001,,GSM9535605,,,train,sda-all,samples/GSE320142/GSM9535605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9535606,GSE320142,GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Primary ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,,untreated,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,355346,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999925295084416,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41998001,,GSM9535606,,,train,sda-all,samples/GSE320142/GSM9535606,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9535607,GSE320142,GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Primary ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,,untreated,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,110570,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499978108581436,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41998001,,GSM9535607,,,train,sda-all,samples/GSE320142/GSM9535607,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9535607,GSE320142,GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Primary ovarian cancer,tumour tissue,MONDO:0005140,ovarian carcinoma,disease,luna,,untreated,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,110570,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997810858143604,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41998001,,GSM9535607,,,train,sda-all,samples/GSE320142/GSM9535607,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9541930,GSE320372,GSE320372,Spatial transcriptomics analysis of dual-pathway spots,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,normal chow diet,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2006,32285,counts,um,1.0,verified,True,H&E,4.681877400909816,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41890086,,GSM9541930,,,train,sda-all,samples/GSE320372/GSM9541930,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9541931,GSE320372,GSE320372,Spatial transcriptomics analysis of dual-pathway spots,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,perturbation,luna,,3-month high-fat diet,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1715,32285,counts,um,1.0,verified,True,H&E,4.68772149272916,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41890086,,GSM9541931,,,train,sda-all,samples/GSE320372/GSM9541931,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9541931,GSE320372,GSE320372,Spatial transcriptomics analysis of dual-pathway spots,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,perturbation,luna,,3-month high-fat diet,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1715,32285,counts,um,1.0,verified,True,H&E,4.6877214927291595,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41890086,,GSM9541931,,,train,sda-all,samples/GSE320372/GSM9541931,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9541932,GSE320372,GSE320372,Spatial transcriptomics analysis of dual-pathway spots,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,primary tissue,MONDO:0007620,fish eye disease,disease,mondo_predicate (Luna: perturbation),,Humanized liver,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2972,18085,counts,um,1.0,verified,True,H&E,8.125851436620149,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41890086,,GSM9541932,,,train,sda-all,samples/GSE320372/GSM9541932,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,feature_species_differs;low_confidence_annotation GSM9829399,GSE320372,GSE320372,Spatial transcriptomics analysis of dual-pathway spots,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,Normal Chow Diet Fast,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1446,32285,counts,um,1.0,verified,True,H&E,4.6825488819963335,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41890086,,GSM9829399,,,train,sda-all,samples/GSE320372/GSM9829399,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9829400,GSE320372,GSE320372,Spatial transcriptomics analysis of dual-pathway spots,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,perturbation,luna,,3-Month High-Fat Diet Fast,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2163,32285,counts,um,1.0,verified,True,H&E,4.68689629039716,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41890086,,GSM9829400,,,train,sda-all,samples/GSE320372/GSM9829400,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -10685,13 +10685,13 @@ GSM9544606,GSE320505,GSE320505,Single cell and spatial sequencing analysis of ca GSM9544607,GSE320505,GSE320505,Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain metastasis,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1986,18085,counts,pixel,3.156752521821369,platform_constant,True,H&E,3.156752521821369,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41917370,10.1038/s42003-026-09915-1,GSM9544607,,,test,hesrt,samples/GSE320505/GSM9544607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9544608,GSE320505,GSE320505,Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain metastasis,metastasis,MONDO:0004992,cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1244,18085,counts,pixel,2.6589954630020096,platform_constant,True,H&E,2.6589954630020096,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,41917370,10.1038/s42003-026-09915-1,GSM9544608,,,test,hesrt,samples/GSE320505/GSM9544608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9550333,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0000974,neck,Head and neck SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4822,17943,counts,pixel,3.941137261446226,platform_constant,True,H&E,3.941137261446226,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550333,,,train,hesrt,samples/GSE321832/GSM9550333,sda-tissue-disease-2.3,"{""organ"": 0.5700000000000001, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation -GSM9550334,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Head and neck SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4772,17943,counts,pixel,3.954820283691993,platform_constant,True,H&E,3.954820283691993,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550334,,,train,hesrt,samples/GSE321832/GSM9550334,sda-tissue-disease-2.3,"{""organ"": 0.49, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation +GSM9550334,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0000167,oral cavity,Head and neck SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4772,17943,counts,pixel,3.9548202836919932,platform_constant,True,H&E,3.9548202836919932,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550334,,,train,hesrt,samples/GSE321832/GSM9550334,sda-tissue-disease-2.3,"{""organ"": 0.49, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation GSM9550335,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,3639,17943,counts,pixel,4.241973414479875,platform_constant,True,H&E,4.241973414479875,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550335,,,train,hesrt,samples/GSE321832/GSM9550335,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9550336,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Cutaneous SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4454,17943,counts,pixel,3.941137261446244,platform_constant,True,H&E,3.941137261446244,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550336,,,train,hesrt,samples/GSE321832/GSM9550336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9550336,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Cutaneous SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4454,17943,counts,pixel,3.9411372614462437,platform_constant,True,H&E,3.9411372614462437,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550336,,,train,hesrt,samples/GSE321832/GSM9550336,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9550337,GSE321832,GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Cutaneous SCC,tumour tissue,MONDO:0005096,squamous cell carcinoma,disease,luna,squamous cell carcinoma,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,4197,17943,counts,pixel,3.954820283691993,platform_constant,True,H&E,3.954820283691993,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42045479,,GSM9550337,,,train,hesrt,samples/GSE321832/GSM9550337,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9554204,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Colon,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2340,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.0553617278224445,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554204,,,train,sda-all,samples/GSE322553/GSM9554204,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9554205,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Colon,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2946,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.055087841822698,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554205,,,train,sda-all,samples/GSE322553/GSM9554205,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, -GSM9554206,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Colon,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2599,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.995130597168981,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554206,,,train,sda-all,samples/GSE322553/GSM9554206,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.99}",, +GSM9554206,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Colon,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2599,17943,counts,um,1.0,verified,True,H&E-like (heuristic),3.9951305971689814,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554206,,,train,sda-all,samples/GSE322553/GSM9554206,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9554207,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001155,colon,Colon,tumour tissue,MONDO:0024331,colorectal carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3579,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.4951335580794165,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554207,,,train,sda-all,samples/GSE322553/GSM9554207,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9554208,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2410,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.09934098262906,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554208,,,train,sda-all,samples/GSE322553/GSM9554208,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9554209,GSE322553,GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,Lung,tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2894,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.582843221405757,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9554209,,,train,sda-all,samples/GSE322553/GSM9554209,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -10701,16 +10701,16 @@ GSM9555996,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS GSM9555997,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Pre-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 015,Patient 015,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,26164,18085,counts,um,1.0,verified,True,H&E,5.081076786406512,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9555997,,,train,sda-all,samples/GSE322640/GSM9555997,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9555998,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Post-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 015,Patient 015,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,27722,18085,counts,um,1.0,verified,True,H&E,2.0077887847942075,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9555998,,,train,sda-all,samples/GSE322640/GSM9555998,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9555999,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Pre-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 029,Patient 029,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,26680,18085,counts,um,1.0,verified,True,H&E,0.6984393995946648,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9555999,,,train,sda-all,samples/GSE322640/GSM9555999,sda-tissue-disease-2.3,"{""organ"": 0.71, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9556000,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Post-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 029,Patient 029,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,94034,18085,counts,um,1.0,verified,True,H&E,1.8128428917950297,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9556000,,,train,sda-all,samples/GSE322640/GSM9556000,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM9556000,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Post-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 029,Patient 029,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,94034,18085,counts,um,1.0,verified,True,H&E,1.8128428917950299,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9556000,,,train,sda-all,samples/GSE322640/GSM9556000,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9556001,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Pre-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 032,Patient 032,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,46513,18085,counts,um,1.0,verified,True,H&E,2.712646016837286,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9556001,,,train,sda-all,samples/GSE322640/GSM9556001,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9556002,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Post-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 032,Patient 032,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,126298,18085,counts,um,1.0,verified,True,H&E,1.434946199281248,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9556002,,,train,sda-all,samples/GSE322640/GSM9556002,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9556003,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Pre-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 033,Patient 033,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,10355,18085,counts,um,1.0,verified,True,H&E,1.4368426842731106,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9556003,,,train,sda-all,samples/GSE322640/GSM9556003,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9556004,GSE322640,GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor needle biopsy,tumour tissue,MONDO:0012817,Ewing sarcoma,disease,luna,,Post-treatment,not stated,luna,not stated,,unknown,,GSE322640:Patient 033,Patient 033,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,13627,18085,counts,um,1.0,verified,True,H&E,2.4958132245300937,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41991689,,GSM9556004,,,train,sda-all,samples/GSE322640/GSM9556004,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9560411,GSE322883,GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0001754,dental pulp,Dental pulp,primary tissue,,,normal,luna,,Normal dental pulp tissue,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,759,18120,counts,um,1.0,verified,True,H&E,3.009729221589046,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9560411,,,train,sda-all,samples/GSE322883/GSM9560411,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9560412,GSE322883,GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0001754,dental pulp,Dental pulp,primary tissue,MONDO:0006937,pulpitis,disease,luna,,Reversible pulpitis tissue,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1496,18120,counts,um,1.0,verified,True,H&E,3.3582257442964054,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9560412,,,train,sda-all,samples/GSE322883/GSM9560412,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.9, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9560413,GSE322883,GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0001754,dental pulp,Dental pulp,primary tissue,MONDO:0006937,pulpitis,disease,luna,,Irreversible pulpitis tissue sample 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1091,18120,counts,um,1.0,verified,True,H&E,2.858867768023296,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9560413,,,train,sda-all,samples/GSE322883/GSM9560413,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9560413,GSE322883,GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0001754,dental pulp,Dental pulp,primary tissue,MONDO:0006937,pulpitis,disease,luna,,Irreversible pulpitis tissue sample 1,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1091,18120,counts,um,1.0,verified,True,H&E,2.8588677680232957,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9560413,,,train,sda-all,samples/GSE322883/GSM9560413,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9560414,GSE322883,GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,oral cavity,luna,UBERON:0001754,dental pulp,Dental pulp,primary tissue,MONDO:0006937,pulpitis,disease,luna,,Irreversible pulpitis tissue sample 2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1170,18120,counts,um,1.0,verified,True,H&E,2.7062391956799305,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9560414,,,train,sda-all,samples/GSE322883/GSM9560414,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9561833,GSE322974,GSE322974,Spatial Transcriptomic Analysis of a Human Bone Marrow Clot Biopsy Using Xenium 5K,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75396,9858,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999976114649681,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41889971;42605801,,GSM9561833,,,train,sda-all,samples/GSE322974/GSM9561833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9561833,GSE322974,GSE322974,Spatial Transcriptomic Analysis of a Human Bone Marrow Clot Biopsy Using Xenium 5K,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75396,9858,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999761146496813,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41889971;42605801,,GSM9561833,,,train,sda-all,samples/GSE322974/GSM9561833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9564255,GSE323357,GSE323357,Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0001474,bone element,bone metastatic tissue,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2212,32285,counts,pixel,4.647819262471229,platform_constant,True,H&E,4.647819262471229,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42108258,10.1038/s41392-026-02691-8,GSM9564255,,,test,hesrt,samples/GSE323357/GSM9564255,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.59, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9564256,GSE323357,GSE323357,Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0001474,bone element,bone metastatic tissue,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,1869,32285,counts,pixel,4.670542648920101,platform_constant,True,H&E,4.670542648920101,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42108258,10.1038/s41392-026-02691-8,GSM9564256,,,test,hesrt,samples/GSE323357/GSM9564256,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9564257,GSE323357,GSE323357,Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0001474,bone element,bone metastatic tissue,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2022,32285,counts,pixel,4.349174590541732,platform_constant,True,H&E,4.349174590541732,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,42108258,10.1038/s41392-026-02691-8,GSM9564257,,,test,hesrt,samples/GSE323357/GSM9564257,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -10719,7 +10719,7 @@ GSM9567833,GSE324075,GSE324075,Integrated spatial transcriptomics (Stereo-seq) a GSM9568685,GSE324128,GSE324128,Molecularly distinct subtypes of Lhx6-positive neurons of the zona incerta differentially regulate sleep pressure and recovery sleep,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0001898,hypothalamus,Hypothalamus,primary tissue,,,normal,luna,,"Mouse was housed in a climate-controlled pathogen-free facility and allowed food, water, and sleep ad libitum during lights on (6:30am-12:30pm). Euthanized after 6 hours (12:30pm).",not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,mBrain_100g,xenium-2.0.1.1,cell,228180,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103359735399,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9568685,,,train,sda-all,samples/GSE324128/GSM9568685,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9570180,GSE324158,GSE324158,Single-cell multi-omic and spatial landscape of primate pineal gland reveals circadian and melatonin regulatory architecture,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Macaca fascicularis,brain,luna,UBERON:0001905,pineal body,Pineal gland,primary tissue,,,normal,luna,,wild type,adult,luna,adult,4 to 5 years,female,female,,,,,BMK S1000,release v3,BMKMANU S3000,sequencing-based,BMKMANU S3000,,,spot,3591,38503,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9570180,,,train,sda-all,samples/GSE324158/GSM9570180,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9572842,GSE324268,GSE324268,Xenium single cell spatial transcriptomics from patient-derived glioblastoma organoid cultured on brain slice and a primary glioblastoma sample,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain,organoid,MONDO:0018177,glioblastoma,disease,luna,Glioblastoma,Patient-derived glioblastoma organoid culture,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55343,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999963480547304,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41951573,,GSM9572842,,,train,sda-all,samples/GSE324268/GSM9572842,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9572843,GSE324268,GSE324268,Xenium single cell spatial transcriptomics from patient-derived glioblastoma organoid cultured on brain slice and a primary glioblastoma sample,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Bran,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,Glioblastoma,Primary glioblastoma,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,851509,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999902267396403,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41951573,,GSM9572843,,,train,sda-all,samples/GSE324268/GSM9572843,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9572843,GSE324268,GSE324268,Xenium single cell spatial transcriptomics from patient-derived glioblastoma organoid cultured on brain slice and a primary glioblastoma sample,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Bran,tumour tissue,MONDO:0018177,glioblastoma,disease,luna,Glioblastoma,Primary glioblastoma,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,851509,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999022673964033,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41951573,,GSM9572843,,,train,sda-all,samples/GSE324268/GSM9572843,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9575880,GSE324427,GSE324427,Myasthenia thymus reprograms class switched B cells into BAFF dependent survivors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thymus,luna,UBERON:0002370,thymus,Thymus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"formalin-fixed, paraffin-embedded",Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,284484,18085,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,42585334,,GSM9575880,,,val,sda-all,samples/GSE324427/GSM9575880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9575881,GSE324427,GSE324427,Myasthenia thymus reprograms class switched B cells into BAFF dependent survivors,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thymus,luna,UBERON:0002370,thymus,Thymus,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,"formalin-fixed, paraffin-embedded",Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,335590,18085,counts,um,1.0,declared_unverified,False,,,,,,attested,,ATTESTED,,,,42585334,,GSM9575881,,,val,sda-all,samples/GSE324427/GSM9575881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.49, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9579206,GSE324535,GSE324535,CD36-mediated lipid-accumulation in reactive microglia drives retinal degeneration through NLRP3-IL-1β pathway,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0010230,eyeball of camera-type eye,eyeball,primary tissue,MONDO:0004580,retinal degeneration,disease,mondo_predicate (Luna: perturbation),,PBS/NaIO3,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,bin,7675,24808,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9579206,,,train,sda-all,samples/GSE324535/GSM9579206,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -10727,13 +10727,13 @@ GSM9580061,GSE324601,GSE324601,Spatial transcriptomic analysis of human iPSC-der GSM9580062,GSE324601,GSE324601,Spatial transcriptomic analysis of human iPSC-derived hemanoids at day 16 and day 28,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,iPSC derived organoids,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1354,19144,counts,um,1.0,verified,True,H&E-like (heuristic),4.654771039127052,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9580062,,,train,sda-all,samples/GSE324601/GSM9580062,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9588621,GSE324903,GSE324903,Early lineage divergence segregates sensory-related and motor-associative identities in the thalamus [Spatial Transcriptomics E12],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Thalamus,primary tissue,,,normal,luna,,ICR/CD-1,embryonic,age rule: embryonic day,embryonic,Embryonic day 12.5,unknown,,,,,,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,740571,31622,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9588621,,,train,sda-all,samples/GSE324903/GSM9588621,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.86, ""life_stage"": 1.0}",, GSM9589058,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,larynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,7727,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000124295657938,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589058,,,val,sda-all,samples/GSE324934/GSM9589058,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.78, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM9589059,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,larynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8377,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999935259995856,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589059,,,val,sda-all,samples/GSE324934/GSM9589059,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.71, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9589060,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,larynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6826,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999953099204561,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589060,,,val,sda-all,samples/GSE324934/GSM9589060,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.8, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9589059,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,larynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8377,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999352599958563,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589059,,,val,sda-all,samples/GSE324934/GSM9589059,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.71, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9589060,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,larynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6826,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999530992045615,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589060,,,val,sda-all,samples/GSE324934/GSM9589060,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.8, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9589061,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,airway,uberon_chain,UBERON:0001737,larynx,larynx,tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5389,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000202429149797,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589061,,,val,sda-all,samples/GSE324934/GSM9589061,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9589062,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,oropharynx (p16 negative),tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,11845,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589062,,,val,sda-all,samples/GSE324934/GSM9589062,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.78, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9589063,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,oropharynx (p16 negative),tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,5563,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000188951490999,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589063,,,val,sda-all,samples/GSE324934/GSM9589063,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.84, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9589064,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,oropharynx (p16 negative),tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77331,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999821428571428,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589064,,,val,sda-all,samples/GSE324934/GSM9589064,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 0.76, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9589065,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,oropharynx (p16 negative),tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,18837,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999354268624252,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589065,,,val,sda-all,samples/GSE324934/GSM9589065,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9589065,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,oropharynx (p16 negative),tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,18837,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49993542686242526,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589065,,,val,sda-all,samples/GSE324934/GSM9589065,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9589066,GSE324934,GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,UBERON:0001729,oropharynx,oropharynx (p16 negative),tumour tissue,MONDO:0010150;MONDO:0021310,head and neck squamous cell carcinoma;malignant tumor of neck,disease,luna,head and neck squamous cell carcinoma,Surgical resection,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,8552,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000020703362227,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42035072,,GSM9589066,,,val,sda-all,samples/GSE324934/GSM9589066,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9597725,GSE325196,GSE325196,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0016525,frontal lobe,Frontal lobe,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,996,36601,counts,um,1.0,verified,True,H&E,4.164344073605525,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9597725,,,test,sda-all,samples/GSE325196/GSM9597725,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.76, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9597726,GSE325196,GSE325196,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001872,parietal lobe,Parietal lobe,metastasis,MONDO:0005105,melanoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2671,18085,counts,um,1.0,verified,True,H&E,6.987627772452715,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9597726,,,test,sda-all,samples/GSE325196/GSM9597726,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -10748,11 +10748,11 @@ GSM9597734,GSE325196,GSE325196,Single Nuclei and Spatial Transcriptomic Datasets GSM9597735,GSE325196,GSE325196,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1033,36601,counts,um,1.0,verified,True,H&E,4.301601385555917,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9597735,,,test,sda-all,samples/GSE325196/GSM9597735,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.85, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9597736,GSE325196,GSE325196,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Parieto-occipital,metastasis,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2921,36601,counts,um,1.0,verified,True,H&E,4.562423792402263,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9597736,,,test,sda-all,samples/GSE325196/GSM9597736,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9598481,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,control,vehicle,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,129203,7237,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000079083122445,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598481,,,train,sda-all,samples/GSE325253/GSM9598481,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 0.97}",, -GSM9598482,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,control,vehicle,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,198127,9078,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999994256306574,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598482,,,train,sda-all,samples/GSE325253/GSM9598482,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9598482,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,control,vehicle,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,198127,9078,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999942563065747,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598482,,,train,sda-all,samples/GSE325253/GSM9598482,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9598483,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,vehicle,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,291340,12115,counts,um,1.0,verified,True,fluorescence: DAPI,0.499992892220212,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598483,,,train,sda-all,samples/GSE325253/GSM9598483,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM9598484,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,vehicle,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,231097,12457,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000021781746896,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598484,,,train,sda-all,samples/GSE325253/GSM9598484,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9598485,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,AZD3965,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,189804,13471,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000076222832004,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598485,,,train,sda-all,samples/GSE325253/GSM9598485,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9598486,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,AZD3965,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,202740,13377,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999945564603927,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598486,,,train,sda-all,samples/GSE325253/GSM9598486,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9598486,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,AZD3965,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,202740,13377,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999455646039276,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598486,,,train,sda-all,samples/GSE325253/GSM9598486,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9598487,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,VB124,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,155257,13221,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000012167226359,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598487,,,train,sda-all,samples/GSE325253/GSM9598487,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9598488,GSE325253,GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,bleomycin,VB124,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,195012,13534,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000057434295166,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,42090478,,GSM9598488,,,train,sda-all,samples/GSE325253/GSM9598488,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",, GSM9601958,GSE325371,GSE325371,SlCAX3 drives the formation of crystal idioblasts for tomato ion compartmentalization under salt stress,Solanum lycopersicum,4081,tomato,Solanum lycopersicum,4081,,False,False,GEO organism field,Solanum lycopersicum,,plant,luna,,,leaf,primary tissue,,,perturbation,luna,,Long term salt stress,not stated,luna,not stated,,unknown,,,,,,BMK S1000,release v3,BMKMANU S1000,sequencing-based,BMK-S1000,,,spot,4362,19294,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9601958,,,train,sda-all,samples/GSE325371/GSM9601958,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.2, ""uberon"": NaN, ""life_stage"": 0.6900000000000001}",disease_status,low_confidence_annotation @@ -10762,7 +10762,7 @@ GSM9601961,GSE325371,GSE325371,SlCAX3 drives the formation of crystal idioblasts GSM9604821,GSE325489,GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001882,nucleus accumbens,nucleus accumbens,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE325489:Br6522,Br6522,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,172722,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989173739823,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42385698,,GSM9604821,,,train,sda-all,samples/GSE325489/GSM9604821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9604822,GSE325489,GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001882,nucleus accumbens,nucleus accumbens,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE325489:Br2720,Br2720,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,228127,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000091899094794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42385698,,GSM9604822,,,train,sda-all,samples/GSE325489/GSM9604822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9604823,GSE325489,GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001882,nucleus accumbens,nucleus accumbens,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE325489:Br6432,Br6432,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,195980,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000075496117342,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42385698,,GSM9604823,,,train,sda-all,samples/GSE325489/GSM9604823,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9604824,GSE325489,GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001882,nucleus accumbens,nucleus accumbens,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE325489:Br6471,Br6471,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,188503,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999962188323754,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42385698,,GSM9604824,,,train,sda-all,samples/GSE325489/GSM9604824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9604824,GSE325489,GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001882,nucleus accumbens,nucleus accumbens,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE325489:Br6471,Br6471,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,188503,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999621883237544,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42385698,,GSM9604824,,,train,sda-all,samples/GSE325489/GSM9604824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9608398,GSE325554,GSE325554,Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,fresh frozen brain,primary tissue,,,normal,luna,,Vechicle (DMSO+saline),adult,age rule: age with unit,adult,9–10 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2453,32285,counts,pixel,4.135561133244332,platform_constant,True,H&E,4.135561133244332,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37243381,10.1111/acel.13832,GSM9608398,,,train,hesrt,samples/GSE325554/GSM9608398,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.12, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9608399,GSE325554,GSE325554,Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,fresh frozen brain,primary tissue,,,normal,luna,,Vechicle (DMSO+saline),adult,age rule: age with unit,adult,9–10 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2700,32285,counts,pixel,4.134555868077988,platform_constant,True,H&E,4.134555868077988,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37243381,10.1111/acel.13832,GSM9608399,,,train,hesrt,samples/GSE325554/GSM9608399,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.2, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9608400,GSE325554,GSE325554,Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,fresh frozen brain,primary tissue,,,perturbation,luna,,Pacitaxel,adult,age rule: age with unit,adult,9–10 months,male,male,,,,,Visium,release v3,Visium,sequencing-based,10x Genomics Visium,,,spot,2636,32285,counts,pixel,4.134555868077998,platform_constant,True,H&E,4.134555868077998,HESRT_HUMAN_REVIEW,,,,,human_visual_review,,,,37243381,10.1111/acel.13832,GSM9608400,,,train,hesrt,samples/GSE325554/GSM9608400,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -10796,7 +10796,7 @@ GSM9613077,GSE325769,GSE325769,Multiomics immune profiling of a patient-relevant GSM9613078,GSE325769,GSE325769,Multiomics immune profiling of a patient-relevant orthotopic lung cancer model using SEPARATE-Seq [MERSCOPE],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,lung,luna,UBERON:0002048,lung,tumour-bearing lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,165382,315,counts,um,1.0,verified,False,,,ABSENT,ABSENT,UNRESOLVED,,,VERIFIED,,,,42026061,,GSM9613078,,,train,sda-all,samples/GSE325769/GSM9613078,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9613504,GSE325797,GSE325797,Circuit Organization and Transcriptomic Heterogeneity of Sympathetic Circuits Innervating Cranial Structures [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0001989,superior cervical ganglion,Whole ganglion,primary tissue,,,normal,luna,,wild-type mice dissected at P14,neonatal or infant,luna,neonatal or infant,,unknown,,,,fixed frozen,fixed-frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,9822,123,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9613504,,,train,sda-all,samples/GSE325797/GSM9613504,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9613505,GSE325797,GSE325797,Circuit Organization and Transcriptomic Heterogeneity of Sympathetic Circuits Innervating Cranial Structures [MERFISH],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,other,luna,UBERON:0001989,superior cervical ganglion,Whole ganglion,primary tissue,,,normal,luna,,wild-type mice CTB injected at P10 and dissected at P14,neonatal or infant,luna,neonatal or infant,,unknown,,,,fixed frozen,fixed-frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,22308,123,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9613505,,,train,sda-all,samples/GSE325797/GSM9613505,sda-tissue-disease-2.3,"{""organ"": 0.71, ""sample_kind"": 0.99, ""disease_status"": 0.56, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9613870,GSE325817,GSE325817,Stroke drives glioma progression through remodeling of the tumor microenvironment [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0005098;MONDO:0021042,stroke disorder;glioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,2206,19465,counts,um,1.0,verified,True,H&E,6.977072380930316,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9613870,,,train,sda-all,samples/GSE325817/GSM9613870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.97, ""life_stage"": 0.62}",, +GSM9613870,GSE325817,GSE325817,Stroke drives glioma progression through remodeling of the tumor microenvironment [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,tumour tissue,MONDO:0005098;MONDO:0021042,stroke disorder;glioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,visium,,,spot,2206,19465,counts,um,1.0,verified,True,H&E,6.9770723809303155,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9613870,,,train,sda-all,samples/GSE325817/GSM9613870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.97, ""life_stage"": 0.62}",, GSM9615445,GSE325846,GSE325846,Spatial transcriptomic analysis of rat gut tissue reveals transcriptional changes associated with high-fat diet and tirzepatide treatment,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,small intestine,luna,UBERON:0000160,intestine,gut,primary tissue,,,normal,luna,,Chow diet + PBS,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1892,23098,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9615445,,,train,sda-all,samples/GSE325846/GSM9615445,sda-tissue-disease-2.4,"{""organ"": 0.89, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.81, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9615446,GSE325846,GSE325846,Spatial transcriptomic analysis of rat gut tissue reveals transcriptional changes associated with high-fat diet and tirzepatide treatment,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,small intestine,luna,UBERON:0000160,intestine,gut,primary tissue,,,perturbation,luna,,Chow diet + tirzepatide,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1092,23098,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9615446,,,train,sda-all,samples/GSE325846/GSM9615446,sda-tissue-disease-2.4,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.73, ""life_stage"": 0.9500000000000001}",, GSM9615447,GSE325846,GSE325846,Spatial transcriptomic analysis of rat gut tissue reveals transcriptional changes associated with high-fat diet and tirzepatide treatment,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,Rattus norvegicus,small intestine,luna,UBERON:0000160,intestine,gut,primary tissue,,,perturbation,luna,,High fat diet + PBS,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1490,23098,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9615447,,,train,sda-all,samples/GSE325846/GSM9615447,sda-tissue-disease-2.4,"{""organ"": 0.89, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 0.93, ""life_stage"": 0.99}",disease_status,low_confidence_annotation @@ -10840,7 +10840,7 @@ GSM9616874,GSE325911,GSE325911,Type-I Interferon drives T-cell responses to amyl GSM9616875,GSE325911,GSE325911,Type-I Interferon drives T-cell responses to amyloid-beta in the central nervous system,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000956,cerebral cortex,cerebral cortex,primary tissue,MONDO:0019065;MONDO:0004975,amyloidosis;Alzheimer disease,disease,luna,Alzheimer’s disease,,aged,age rule: age in years,aged,76years,male,male,,,,,Molecular Cartography,release v3,Molecular Cartography,imaging-based,Molecular Cartography,,,cell,4906,98,counts,pixel,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM9616875,,,train,sda-all,samples/GSE325911/GSM9616875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9616876,GSE325911,GSE325911,Type-I Interferon drives T-cell responses to amyloid-beta in the central nervous system,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000956,cerebral cortex,cerebral cortex,primary tissue,MONDO:0019065;MONDO:0004975,amyloidosis;Alzheimer disease,disease,luna,Alzheimer’s disease,,aged,age rule: age in years,aged,76years,male,male,,,,,Molecular Cartography,release v3,Molecular Cartography,imaging-based,Molecular Cartography,,,cell,3161,87,counts,pixel,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM9616876,,,train,sda-all,samples/GSE325911/GSM9616876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9616877,GSE325911,GSE325911,Type-I Interferon drives T-cell responses to amyloid-beta in the central nervous system,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000956,cerebral cortex,cerebral cortex,primary tissue,MONDO:0019065;MONDO:0004975,amyloidosis;Alzheimer disease,disease,luna,Alzheimer’s disease,,aged,age rule: age in years,aged,76years,male,male,,,,,Molecular Cartography,release v3,Molecular Cartography,imaging-based,Molecular Cartography,,,cell,2041,80,counts,pixel,,unresolved,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM9616877,,,train,sda-all,samples/GSE325911/GSM9616877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9617482,GSE325935,GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain,metastasis,,,disease,luna,,ER+/PR-/HER2+ BC,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,386809,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999942454654267,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9617482,,,train,sda-all,samples/GSE325935/GSM9617482,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9617482,GSE325935,GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain,metastasis,,,disease,luna,,ER+/PR-/HER2+ BC,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,386809,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999424546542676,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9617482,,,train,sda-all,samples/GSE325935/GSM9617482,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9617483,GSE325935,GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain,metastasis,,,disease,luna,,ER-/PR-/HER2- BC,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,490687,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000086278299282,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9617483,,,train,sda-all,samples/GSE325935/GSM9617483,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9617484,GSE325935,GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Parieto-occipital,metastasis,,,disease,luna,,ER+/PR-/HER2+ BC,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,448149,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000034522439586,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9617484,,,train,sda-all,samples/GSE325935/GSM9617484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.48, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9617485,GSE325935,GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain,metastasis,,,disease,luna,,ER-/PR-/HER2- BC,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,207277,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000116525972345,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9617485,,,train,sda-all,samples/GSE325935/GSM9617485,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -10877,17 +10877,17 @@ GSM9636020,GSE326639+GSE326753,GSE326639,"Ubiquitin-like proteins NEDD8 and SUMO GSM9636817,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Tumor,tumour tissue,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:2,2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51539,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025815778604,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636817,,,test,sda-all,samples/GSE326660/GSM9636817,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9636818,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Tumor,tumour tissue,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:2,2,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,213088,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999862372694742,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636818,,,test,sda-all,samples/GSE326660/GSM9636818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.48, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM9636819,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0015876,pelvic lymph node,Tumor,metastasis,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:6,6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,106368,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000097456388266,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636819,,,test,sda-all,samples/GSE326660/GSM9636819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9636820,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0015876,pelvic lymph node,Tumor,metastasis,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:6,6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59563,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999981203007518,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636820,,,test,sda-all,samples/GSE326660/GSM9636820,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9636820,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0015876,pelvic lymph node,Tumor,metastasis,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:6,6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59563,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999812030075186,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636820,,,test,sda-all,samples/GSE326660/GSM9636820,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9636821,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0015876,pelvic lymph node,Tumor,metastasis,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:6,6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,216922,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000060043668123,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636821,,,test,sda-all,samples/GSE326660/GSM9636821,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9636822,GSE326660,GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0015876,pelvic lymph node,Tumor,metastasis,MONDO:0019210,cutaneous neuroendocrine carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,GSE326660:6,6,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35429,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000188951490999,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42715345,,GSM9636822,,,test,sda-all,samples/GSE326660/GSM9636822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9638040,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,juvenile,age rule: bare number read as years,juvenile,17,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,249420,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000128945739633,VERIFIED,VERIFIED,FAILED,,,VERIFIED,PASS,,,,,GSM9638040,,,train,sda-all,samples/GSE326743/GSM9638040,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9638041,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,37,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,329371,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000140977443609,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638041,,,train,sda-all,samples/GSE326743/GSM9638041,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9638042,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,220435,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999808553251649,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638042,,,train,sda-all,samples/GSE326743/GSM9638042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9638042,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,220435,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998085532516495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638042,,,train,sda-all,samples/GSE326743/GSM9638042,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9638043,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,32,female,F,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,396173,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.499979353773098,VERIFIED,VERIFIED,FAILED,,,VERIFIED,PASS,,,,,GSM9638043,,,train,sda-all,samples/GSE326743/GSM9638043,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9638044,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,57,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,366199,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000072314049586,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638044,,,train,sda-all,samples/GSE326743/GSM9638044,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9638045,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,31,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,331582,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999968998015872,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638045,,,train,sda-all,samples/GSE326743/GSM9638045,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9638045,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,31,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,331582,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999689980158724,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638045,,,train,sda-all,samples/GSE326743/GSM9638045,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9638046,GSE326743,GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,adult,age rule: bare number read as years,adult,59,male,M,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,314413,9749,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000068832599119,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9638046,,,train,sda-all,samples/GSE326743/GSM9638046,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9641121,GSE326837,GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,49050,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.499988174077578,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41269758,,GSM9641121,,,train,sda-all,samples/GSE326837/GSM9641121,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.91}",, +GSM9641121,GSE326837,GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,49050,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998817407757806,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41269758,,GSM9641121,,,train,sda-all,samples/GSE326837/GSM9641121,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.91}",, GSM9641122,GSE326837,GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,19922,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.500010350742296,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41269758,,GSM9641122,,,train,sda-all,samples/GSE326837/GSM9641122,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.44}",life_stage,low_confidence_annotation GSM9641123,GSE326837,GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,juvenile,luna,juvenile,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,39123,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41269758,,GSM9641123,,,train,sda-all,samples/GSE326837/GSM9641123,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 0.81}",, GSM9641124,GSE326837,GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,128632,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965507726269,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41269758,,GSM9641124,,,train,sda-all,samples/GSE326837/GSM9641124,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 0.62}",, @@ -10901,7 +10901,7 @@ GSM9643337,GSE326903,GSE326903,Polarized neocortical organoids with areal signat GSM9643338,GSE326903,GSE326903,Polarized neocortical organoids with areal signatures upon the formation of anterior and posterior organizers. [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,neocortical organoid,organoid,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3888,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.747508117245197,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42624107,,GSM9643338,,,test,sda-all,samples/GSE326903/GSM9643338,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM9643339,GSE326904,GSE326904,Cardiac tertiary immune niches drive immune activation in immune checkpoint inhibitor myocarditis [CosMx],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,83745,1194,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42647623,,GSM9643339,,,train,sda-all,samples/GSE326904/GSM9643339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9643340,GSE326904,GSE326904,Cardiac tertiary immune niches drive immune activation in immune checkpoint inhibitor myocarditis [CosMx],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0004496,myocarditis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,339640,1144,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42647623,,GSM9643340,,,train,sda-all,samples/GSE326904/GSM9643340,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9647219,GSE327056,GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,adjacent tumor tissue,primary tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4885,36601,counts,um,1.0,verified,True,H&E,4.047687536914316,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42100437,,GSM9647219,,,test,sda-all,samples/GSE327056/GSM9647219,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9647219,GSE327056,GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,adjacent tumor tissue,primary tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4885,36601,counts,um,1.0,verified,True,H&E,4.0476875369143155,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42100437,,GSM9647219,,,test,sda-all,samples/GSE327056/GSM9647219,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.41000000000000003, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9647220,GSE327056,GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,pancreatic cancer tussue,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3983,36601,counts,um,1.0,verified,True,H&E,4.04712376249616,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42100437,,GSM9647220,,,test,sda-all,samples/GSE327056/GSM9647220,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9647221,GSE327056,GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0003891,stroma,tumor stroma,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4483,36601,counts,um,1.0,verified,True,H&E,4.046616875407982,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42100437,,GSM9647221,,,test,sda-all,samples/GSE327056/GSM9647221,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9647222,GSE327056,GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,pancreas,luna,UBERON:0001264,pancreas,normal pancreatic tissue,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4724,36601,counts,um,1.0,verified,True,H&E,4.385825585967708,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42100437,,GSM9647222,,,test,sda-all,samples/GSE327056/GSM9647222,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -10931,16 +10931,16 @@ GSM9651121,GSE327192,GSE327192,Dendritic cell-mediated antigen presentation regu GSM9651122,GSE327192,GSE327192,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer [MERFISH],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Human lung cancer (NSCLC),tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,274731,550,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9651122,,,train,sda-all,samples/GSE327192/GSM9651122,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9651123,GSE327192,GSE327192,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer [MERFISH],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Human lung cancer (NSCLC),tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,681194,550,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9651123,,,train,sda-all,samples/GSE327192/GSM9651123,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9651124,GSE327192,GSE327192,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer [MERFISH],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Human lung cancer (NSCLC),tumour tissue,MONDO:0005233,non-small cell lung carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,453859,550,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9651124,,,train,sda-all,samples/GSE327192/GSM9651124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9652794,GSE327284,GSE327284,"Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury (Spatial data)",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0858950;MONDO:0005385,traumatic brain injury;vascular disorder,disease,mondo_predicate (Luna: perturbation),,C57Bl6,adult,age rule: age with unit,adult,3 months,male,male,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,121967,19070,counts,um,1.0,verified,True,H&E-like (heuristic),2.382743064296473,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42463666,,GSM9652794,,,train,sda-all,samples/GSE327284/GSM9652794,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9652794,GSE327284,GSE327284,"Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury (Spatial data)",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0858950;MONDO:0005385,traumatic brain injury;vascular disorder,disease,mondo_predicate (Luna: perturbation),,C57Bl6,adult,age rule: age with unit,adult,3 months,male,male,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,121967,19070,counts,um,1.0,verified,True,H&E-like (heuristic),2.3827430642964735,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42463666,,GSM9652794,,,train,sda-all,samples/GSE327284/GSM9652794,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9652795,GSE327284,GSE327284,"Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury (Spatial data)",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0858950,traumatic brain injury,disease,luna,,C57Bl6,adult,age rule: age with unit,adult,3 months,male,male,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,105589,19070,counts,um,1.0,verified,True,H&E-like (heuristic),2.2431857389186005,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42463666,,GSM9652795,,,train,sda-all,samples/GSE327284/GSM9652795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9654047,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Biphasic pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:27278,27278,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,50519,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000206076307112,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654047,,,test,sda-all,samples/GSE327347/GSM9654047,sda-tissue-disease-2.3,"{""organ"": 0.52, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.14, ""life_stage"": 1.0}",organ;uberon,low_confidence_annotation GSM9654048,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Epithelioid pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:29891,29891,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,298395,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500010329968715,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654048,,,test,sda-all,samples/GSE327347/GSM9654048,sda-tissue-disease-2.3,"{""organ"": 0.54, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9654049,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Sarcomatoid pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:27306,27306,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102892,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000044164409375,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654049,,,test,sda-all,samples/GSE327347/GSM9654049,sda-tissue-disease-2.3,"{""organ"": 0.56, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9654050,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Sarcomatoid pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:27306,27306,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,6947,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000185154707044,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,41319863;42138664,,GSM9654050,,,test,sda-all,samples/GSE327347/GSM9654050,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.76, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM9654051,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Biphasic pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:27278,27278,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48293,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999926453283125,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654051,,,test,sda-all,samples/GSE327347/GSM9654051,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9654051,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Biphasic pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:27278,27278,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48293,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999264532831256,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654051,,,test,sda-all,samples/GSE327347/GSM9654051,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9654052,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Epithelioid pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:26599,26599,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,65607,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654052,,,test,sda-all,samples/GSE327347/GSM9654052,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9654053,GSE327347,GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,,,pleural mesothelioma,tumour tissue,MONDO:0003308,pleural mesothelioma,disease,luna,Biphasic pleural mesothelioma,not applicable,not stated,luna,not stated,,unknown,,GSE327347:27278,27278,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57823,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000014711074496,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41319863;42138664,,GSM9654053,,,test,sda-all,samples/GSE327347/GSM9654053,sda-tissue-disease-2.3,"{""organ"": 0.53, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM9656414,GSE327406,GSE327406,"Spatially resolved, integrated single-cell multiomic profiling of the transcriptome and epigenomic targets in frozen tissue sections",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),"Curio Trekker (single-cell, Slide-seq beads)",sequencing-based,other,,,cell,6113,32285,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42371963,,GSM9656414,,,train,sda-all,samples/GSE327406/GSM9656414,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9656414,GSE327406,GSE327406,"Spatially resolved, integrated single-cell multiomic profiling of the transcriptome and epigenomic targets in frozen tissue sections",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Slide-seq,GEO series text (assay_final.csv),Curio Trekker,sequencing-based,other,,,cell,6113,32285,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42371963,,GSM9656414,,,train,sda-all,samples/GSE327406/GSM9656414,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9656850,GSE327441,GSE327441,Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002148,locus ceruleus,locus coeruleus,primary tissue,,,normal,luna,neurotypical,,aged,age rule: bare number read as years,aged,76,female,female,GSE327441:Donor_2,Donor_2,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3121,18061,counts,um,1.0,verified,True,blue bright-field stain (heuristic),3.803520062425479,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41935248,,GSM9656850,,,train,sda-all,samples/GSE327441/GSM9656850,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9656851,GSE327441,GSE327441,Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002148,locus ceruleus,locus coeruleus,primary tissue,,,normal,luna,neurotypical,,aged,age rule: bare number read as years,aged,76,female,female,GSE327441:Donor_2,Donor_2,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2880,18061,counts,um,1.0,verified,True,blue bright-field stain (heuristic),3.988825879513817,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41935248,,GSM9656851,,,train,sda-all,samples/GSE327441/GSM9656851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9656852,GSE327441,GSE327441,Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002148,locus ceruleus,locus coeruleus,primary tissue,,,normal,luna,neurotypical,,aged,age rule: bare number read as years,aged,76,female,female,GSE327441:Donor_2,Donor_2,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3505,18061,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.611655651530046,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,41935248,,GSM9656852,,,train,sda-all,samples/GSE327441/GSM9656852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -10991,27 +10991,27 @@ GSM9684215,GSE328481,GSE328481,Uncovering ectopic GC-like niches for tumor react GSM9684216,GSE328481,GSE328481,Uncovering ectopic GC-like niches for tumor reactive lymphocyte priming in lung adenocarcinoma using Stereo-XCR-seq,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0005061,lung adenocarcinoma,disease,luna,lung adenocarcinoma,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,70071,33245,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,PASS,,,42547508,,GSM9684216,,,train,sda-all,samples/GSE328481/GSM9684216,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.98, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9687898,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,perturbation,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23729,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000257484207635,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687898,,,train,sda-all,samples/GSE328700/GSM9687898,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687899,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23758,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000292056074767,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687899,,,train,sda-all,samples/GSE328700/GSM9687899,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9687900,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24081,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999588680487001,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687900,,,train,sda-all,samples/GSE328700/GSM9687900,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9687901,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19578,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999776816371377,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687901,,,train,sda-all,samples/GSE328700/GSM9687901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9687900,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24081,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49995886804870016,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687900,,,train,sda-all,samples/GSE328700/GSM9687900,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.55, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9687901,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19578,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997768163713774,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687901,,,train,sda-all,samples/GSE328700/GSM9687901,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687902,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,perturbation,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,19509,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999897414854329,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687902,,,train,sda-all,samples/GSE328700/GSM9687902,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.29, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9687903,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999732466249588,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687903,,,train,sda-all,samples/GSE328700/GSM9687903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9687903,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,normal,luna,,Sham,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20474,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997324662495884,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687903,,,train,sda-all,samples/GSE328700/GSM9687903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687904,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,disease,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,32694,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.50000365532703,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687904,,,train,sda-all,samples/GSE328700/GSM9687904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687905,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,disease,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28768,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000274763016898,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687905,,,train,sda-all,samples/GSE328700/GSM9687905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.44, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687906,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,disease,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,21978,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999690891605989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687906,,,train,sda-all,samples/GSE328700/GSM9687906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687907,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,perturbation,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,30660,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999690891605989,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687907,,,train,sda-all,samples/GSE328700/GSM9687907,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.47000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9687908,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,disease,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24626,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000274763016898,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687908,,,train,sda-all,samples/GSE328700/GSM9687908,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.35000000000000003, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9687909,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,perturbation,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24447,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999835418038182,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687909,,,train,sda-all,samples/GSE328700/GSM9687909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9687909,GSE328700,GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002792,lumbar spinal cord,mouse lumbar spinal cord,primary tissue,,,perturbation,luna,,SNI,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24447,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998354180381827,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42457652,,GSM9687909,,,train,sda-all,samples/GSE328700/GSM9687909,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9694495,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,275665,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999912459413001,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694495,,,train,sda-all,samples/GSE328931/GSM9694495,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9694496,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,127188,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999853458382179,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694496,,,train,sda-all,samples/GSE328931/GSM9694496,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9694496,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,127188,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998534583821796,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694496,,,train,sda-all,samples/GSE328931/GSM9694496,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9694497,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,297497,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000019409937888,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694497,,,train,sda-all,samples/GSE328931/GSM9694497,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9694498,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,322844,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000071195567752,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694498,,,train,sda-all,samples/GSE328931/GSM9694498,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9694499,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,316319,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000069026450936,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694499,,,train,sda-all,samples/GSE328931/GSM9694499,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM9694500,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,230482,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000041427308882,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694500,,,train,sda-all,samples/GSE328931/GSM9694500,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.92}",, -GSM9694501,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,203314,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.499997932688332,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694501,,,train,sda-all,samples/GSE328931/GSM9694501,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, +GSM9694501,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,203314,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999793268833204,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694501,,,train,sda-all,samples/GSE328931/GSM9694501,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9694502,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,261309,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999985225459488,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694502,,,train,sda-all,samples/GSE328931/GSM9694502,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9694503,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,275333,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000095504902585,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694503,,,train,sda-all,samples/GSE328931/GSM9694503,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.92}",, GSM9694504,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,81449,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000029550827423,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694504,,,train,sda-all,samples/GSE328931/GSM9694504,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.98}",, -GSM9694505,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,141598,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999848860888379,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694505,,,train,sda-all,samples/GSE328931/GSM9694505,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, +GSM9694505,GSE328931,GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005724,cryptococcosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,141598,13603,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998488608883795,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42209491,,GSM9694505,,,train,sda-all,samples/GSE328931/GSM9694505,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",, GSM9697685,GSE329112,GSE329112,Aging disrupts spatiotemporal coordination in the cycling murine ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,Young,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,8371,30709,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42310395,,GSM9697685,,,val,sda-all,samples/GSE329112/GSM9697685,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.66}",, GSM9697686,GSE329112,GSE329112,Aging disrupts spatiotemporal coordination in the cycling murine ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,Young,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,11756,30709,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42310395,,GSM9697686,,,val,sda-all,samples/GSE329112/GSM9697686,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.53}",life_stage,low_confidence_annotation GSM9697687,GSE329112,GSE329112,Aging disrupts spatiotemporal coordination in the cycling murine ovary,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,ovary,luna,UBERON:0000992,ovary,Ovary,primary tissue,,,normal,luna,,Young,adult,luna,adult,,unknown,,,,fresh frozen,fresh frozen,Slide-seq,release v3,Slide-seq,sequencing-based,Slide-seq,,,bead,9913,30709,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42310395,,GSM9697687,,,val,sda-all,samples/GSE329112/GSM9697687,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.5}",life_stage,low_confidence_annotation @@ -11084,7 +11084,7 @@ GSM9697753,GSE329112,GSE329112,Aging disrupts spatiotemporal coordination in the GSM9699665,GSE329229,GSE329229,Analysis of mouse livers fed with high cholesterol diet and alcohol by spatial transcriptomics,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,perturbation,luna,,"high cholesterol diet, alcohol",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,225376,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000074753887203,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9699665,,,train,sda-all,samples/GSE329229/GSM9699665,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9703599,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,disease,luna,,B16F10 injection,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77166,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999951817180616,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703599,,,train,sda-all,samples/GSE329415/GSM9703599,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.76, ""disease_status"": 0.92, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9703600,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,disease,luna,,B16F10 injection,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,65456,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999876094498596,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703600,,,train,sda-all,samples/GSE329415/GSM9703600,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.66, ""disease_status"": 0.93, ""uberon"": 0.43, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9703601,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,disease,luna,,B16F10 injection,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,140716,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896779521057,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703601,,,train,sda-all,samples/GSE329415/GSM9703601,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.79, ""disease_status"": 0.87, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9703601,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,disease,luna,,B16F10 injection,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,140716,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998967795210575,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703601,,,train,sda-all,samples/GSE329415/GSM9703601,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.79, ""disease_status"": 0.87, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9703602,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,disease,luna,,B16F10 injection,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,119458,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092319054653,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703602,,,train,sda-all,samples/GSE329415/GSM9703602,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.7000000000000001, ""disease_status"": 0.9500000000000001, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM9703603,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,perturbation,luna,,Prf1-/-,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,182887,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999944490262005,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703603,,,train,sda-all,samples/GSE329415/GSM9703603,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.43, ""uberon"": 0.66, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9703604,GSE329415,GSE329415,Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0002481,bone tissue,Bone,primary tissue,,,perturbation,luna,,Prf1-/-,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,169216,13639,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999969587854606,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9703604,,,train,sda-all,samples/GSE329415/GSM9703604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.45, ""life_stage"": 1.0}",disease_status;uberon,low_confidence_annotation @@ -11218,22 +11218,22 @@ GSM9721577,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721578,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,71,male,M,GSE330224:NY7149,NY7149,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4486,36601,counts,um,1.0,verified,True,H&E,3.984540792565202,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721578,,,train,sda-all,samples/GSE330224/GSM9721578,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721579,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,71,male,M,GSE330224:NY7149,NY7149,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4909,36601,counts,um,1.0,verified,True,H&E,3.9643241356001018,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721579,,,train,sda-all,samples/GSE330224/GSM9721579,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721580,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUHV061BZR,NEUHV061BZR,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4729,36601,counts,um,1.0,verified,True,H&E,3.862631176435037,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721580,,,train,sda-all,samples/GSE330224/GSM9721580,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721581,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUHV061BZR,NEUHV061BZR,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4982,36601,counts,um,1.0,verified,True,H&E,3.866288635115128,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721581,,,train,sda-all,samples/GSE330224/GSM9721581,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721581,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUHV061BZR,NEUHV061BZR,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4982,36601,counts,um,1.0,verified,True,H&E,3.8662886351151284,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721581,,,train,sda-all,samples/GSE330224/GSM9721581,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721582,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUHV061BZR,NEUHV061BZR,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4802,36601,counts,um,1.0,verified,True,H&E,3.818826320828604,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721582,,,train,sda-all,samples/GSE330224/GSM9721582,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721583,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUHV061BZR,NEUHV061BZR,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4654,36601,counts,um,1.0,verified,True,H&E,3.8194451267323344,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721583,,,train,sda-all,samples/GSE330224/GSM9721583,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721584,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,74,male,M,GSE330224:NEUXZ580AW6,NEUXZ580AW6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4937,36601,counts,um,1.0,verified,True,H&E,3.860799010458336,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721584,,,train,sda-all,samples/GSE330224/GSM9721584,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721584,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,74,male,M,GSE330224:NEUXZ580AW6,NEUXZ580AW6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4937,36601,counts,um,1.0,verified,True,H&E,3.8607990104583356,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721584,,,train,sda-all,samples/GSE330224/GSM9721584,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721585,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,74,male,M,GSE330224:NEUXZ580AW6,NEUXZ580AW6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4958,36601,counts,um,1.0,verified,True,H&E,3.860537237293325,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721585,,,train,sda-all,samples/GSE330224/GSM9721585,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721587,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4970,36601,counts,um,1.0,verified,True,H&E,3.8546129390296326,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721587,,,train,sda-all,samples/GSE330224/GSM9721587,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721588,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001384,primary motor cortex,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3785,36601,counts,um,1.0,verified,True,H&E,3.867415293013679,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721588,,,train,sda-all,samples/GSE330224/GSM9721588,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721589,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4829,36601,counts,um,1.0,verified,True,H&E,3.8355595489458354,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721589,,,train,sda-all,samples/GSE330224/GSM9721589,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721590,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4806,36601,counts,um,1.0,verified,True,H&E,3.845513130439948,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721590,,,train,sda-all,samples/GSE330224/GSM9721590,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.72, ""life_stage"": 1.0}",, -GSM9721591,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,33,female,F,GSE330224:NEUTH315CBQ,NEUTH315CBQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4986,36601,counts,um,1.0,verified,True,H&E,3.843470064195474,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721591,,,train,sda-all,samples/GSE330224/GSM9721591,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.64, ""life_stage"": 1.0}",, +GSM9721590,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4806,36601,counts,um,1.0,verified,True,H&E,3.8455131304399477,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721590,,,train,sda-all,samples/GSE330224/GSM9721590,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.72, ""life_stage"": 1.0}",, +GSM9721591,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,33,female,F,GSE330224:NEUTH315CBQ,NEUTH315CBQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4986,36601,counts,um,1.0,verified,True,H&E,3.8434700641954747,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721591,,,train,sda-all,samples/GSE330224/GSM9721591,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.64, ""life_stage"": 1.0}",, GSM9721592,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,33,female,F,GSE330224:NEUTH315CBQ,NEUTH315CBQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.858169857108779,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721592,,,train,sda-all,samples/GSE330224/GSM9721592,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM9721593,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4748,36601,counts,um,1.0,verified,True,H&E,3.882974841906065,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721593,,,train,sda-all,samples/GSE330224/GSM9721593,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721593,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4748,36601,counts,um,1.0,verified,True,H&E,3.8829748419060652,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721593,,,train,sda-all,samples/GSE330224/GSM9721593,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721594,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4939,36601,counts,um,1.0,verified,True,H&E,3.8666296333160872,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721594,,,train,sda-all,samples/GSE330224/GSM9721594,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721595,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,33,female,F,GSE330224:NEUTH315CBQ,NEUTH315CBQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.8837094013024553,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721595,,,train,sda-all,samples/GSE330224/GSM9721595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, +GSM9721595,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,33,female,F,GSE330224:NEUTH315CBQ,NEUTH315CBQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.8837094013024545,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721595,,,train,sda-all,samples/GSE330224/GSM9721595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM9721596,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,33,female,F,GSE330224:NEUTH315CBQ,NEUTH315CBQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4976,36601,counts,um,1.0,verified,True,H&E,3.881809811295953,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721596,,,train,sda-all,samples/GSE330224/GSM9721596,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.48, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721597,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4840,36601,counts,um,1.0,verified,True,H&E,3.876641374457317,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721597,,,train,sda-all,samples/GSE330224/GSM9721597,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721597,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4840,36601,counts,um,1.0,verified,True,H&E,3.8766413744573165,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721597,,,train,sda-all,samples/GSE330224/GSM9721597,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721598,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4874,36601,counts,um,1.0,verified,True,H&E,3.8839762805437217,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721598,,,train,sda-all,samples/GSE330224/GSM9721598,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721599,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,69,female,F,GSE330224:NEUAP156PM4,NEUAP156PM4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3259,36601,counts,um,1.0,verified,True,H&E,3.890607415657653,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721599,,,train,sda-all,samples/GSE330224/GSM9721599,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721600,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,69,female,F,GSE330224:NEUAP156PM4,NEUAP156PM4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4000,36601,counts,um,1.0,verified,True,H&E,3.904974457545604,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721600,,,train,sda-all,samples/GSE330224/GSM9721600,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, @@ -11241,8 +11241,8 @@ GSM9721601,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721602,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,69,female,F,GSE330224:NEUAP156PM4,NEUAP156PM4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3573,36601,counts,um,1.0,verified,True,H&E,3.897512571305688,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721602,,,train,sda-all,samples/GSE330224/GSM9721602,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721603,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.887868727230767,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721603,,,train,sda-all,samples/GSE330224/GSM9721603,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721604,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4976,36601,counts,um,1.0,verified,True,H&E,3.920605312209149,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721604,,,train,sda-all,samples/GSE330224/GSM9721604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721605,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUEH612JPA,NEUEH612JPA,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4409,36601,counts,um,1.0,verified,True,H&E,3.890079295211608,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721605,,,train,sda-all,samples/GSE330224/GSM9721605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721606,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUEH612JPA,NEUEH612JPA,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4416,36601,counts,um,1.0,verified,True,H&E,3.921047530342636,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721606,,,train,sda-all,samples/GSE330224/GSM9721606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721605,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUEH612JPA,NEUEH612JPA,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4409,36601,counts,um,1.0,verified,True,H&E,3.8900792952116077,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721605,,,train,sda-all,samples/GSE330224/GSM9721605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM9721606,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUEH612JPA,NEUEH612JPA,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4416,36601,counts,um,1.0,verified,True,H&E,3.9210475303426358,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721606,,,train,sda-all,samples/GSE330224/GSM9721606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721607,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4980,36601,counts,um,1.0,verified,True,H&E,3.9055094396307446,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721607,,,train,sda-all,samples/GSE330224/GSM9721607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9721608,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4710,36601,counts,um,1.0,verified,True,H&E,3.902295153799856,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721608,,,train,sda-all,samples/GSE330224/GSM9721608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.33, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721609,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUEH612JPA,NEUEH612JPA,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4310,36601,counts,um,1.0,verified,True,H&E,3.899094104513946,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721609,,,train,sda-all,samples/GSE330224/GSM9721609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, @@ -11251,63 +11251,63 @@ GSM9721611,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721612,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUMP035RP4,NEUMP035RP4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4476,36601,counts,um,1.0,verified,True,H&E,3.899699258332204,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721612,,,train,sda-all,samples/GSE330224/GSM9721612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721613,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUMP035RP4,NEUMP035RP4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3617,36601,counts,um,1.0,verified,True,H&E,3.913780998430285,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721613,,,train,sda-all,samples/GSE330224/GSM9721613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9721614,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUMP035RP4,NEUMP035RP4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4187,36601,counts,um,1.0,verified,True,H&E,3.904962826998218,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721614,,,train,sda-all,samples/GSE330224/GSM9721614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721615,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,54,female,F,GSE330224:NEUHD481VCL,NEUHD481VCL,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4636,36601,counts,um,1.0,verified,True,H&E,3.8929094711308654,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721615,,,train,sda-all,samples/GSE330224/GSM9721615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM9721615,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,54,female,F,GSE330224:NEUHD481VCL,NEUHD481VCL,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4636,36601,counts,um,1.0,verified,True,H&E,3.8929094711308663,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721615,,,train,sda-all,samples/GSE330224/GSM9721615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721616,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,54,female,F,GSE330224:NEUHD481VCL,NEUHD481VCL,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4573,36601,counts,um,1.0,verified,True,H&E,3.930407848387514,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721616,,,train,sda-all,samples/GSE330224/GSM9721616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, GSM9721617,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,54,female,F,GSE330224:NEUHD481VCL,NEUHD481VCL,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3858,36601,counts,um,1.0,verified,True,H&E,3.8957168856311983,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721617,,,train,sda-all,samples/GSE330224/GSM9721617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721618,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,54,female,F,GSE330224:NEUHD481VCL,NEUHD481VCL,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4550,36601,counts,um,1.0,verified,True,H&E,3.8712001395165614,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721618,,,train,sda-all,samples/GSE330224/GSM9721618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM9721618,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,54,female,F,GSE330224:NEUHD481VCL,NEUHD481VCL,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4550,36601,counts,um,1.0,verified,True,H&E,3.8712001395165623,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721618,,,train,sda-all,samples/GSE330224/GSM9721618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9721619,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUGG230KV0,NEUGG230KV0,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4301,36601,counts,um,1.0,verified,True,H&E,3.936000293873908,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721619,,,train,sda-all,samples/GSE330224/GSM9721619,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721620,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUGG230KV0,NEUGG230KV0,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4526,36601,counts,um,1.0,verified,True,H&E,3.8790886090098535,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721620,,,train,sda-all,samples/GSE330224/GSM9721620,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721621,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,58,female,F,GSE330224:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4664,36601,counts,um,1.0,verified,True,H&E,3.900179473580256,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721621,,,train,sda-all,samples/GSE330224/GSM9721621,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.66, ""life_stage"": 1.0}",, GSM9721622,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,58,female,F,GSE330224:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3450,36601,counts,um,1.0,verified,True,H&E,3.909884875865368,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721622,,,train,sda-all,samples/GSE330224/GSM9721622,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.64, ""life_stage"": 1.0}",, -GSM9721623,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3648,36601,counts,um,1.0,verified,True,H&E,3.863426824162308,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721623,,,train,sda-all,samples/GSE330224/GSM9721623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM9721623,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3648,36601,counts,um,1.0,verified,True,H&E,3.8634268241623078,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721623,,,train,sda-all,samples/GSE330224/GSM9721623,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9721624,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4473,36601,counts,um,1.0,verified,True,H&E,3.9045875793271314,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721624,,,train,sda-all,samples/GSE330224/GSM9721624,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.87, ""life_stage"": 1.0}",, GSM9721625,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,58,female,F,GSE330224:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4919,36601,counts,um,1.0,verified,True,H&E,3.8984061008423554,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721625,,,train,sda-all,samples/GSE330224/GSM9721625,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.76, ""life_stage"": 1.0}",, -GSM9721626,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,58,female,F,GSE330224:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3915,36601,counts,um,1.0,verified,True,H&E,3.887752825628058,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721626,,,train,sda-all,samples/GSE330224/GSM9721626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.63, ""life_stage"": 1.0}",, +GSM9721626,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,58,female,F,GSE330224:SD028/12,SD028/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3915,36601,counts,um,1.0,verified,True,H&E,3.8877528256280582,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721626,,,train,sda-all,samples/GSE330224/GSM9721626,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.63, ""life_stage"": 1.0}",, GSM9721627,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4589,36601,counts,um,1.0,verified,True,H&E,3.913542272548379,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721627,,,train,sda-all,samples/GSE330224/GSM9721627,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721628,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4285,36601,counts,um,1.0,verified,True,H&E,3.905453605523303,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721628,,,train,sda-all,samples/GSE330224/GSM9721628,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM9721628,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD050/19,SD050/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4285,36601,counts,um,1.0,verified,True,H&E,3.9054536055233027,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721628,,,train,sda-all,samples/GSE330224/GSM9721628,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9721629,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,female,F,GSE330224:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3409,36601,counts,um,1.0,verified,True,H&E,3.8918785661680126,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721629,,,train,sda-all,samples/GSE330224/GSM9721629,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, GSM9721630,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,female,F,GSE330224:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3634,36601,counts,um,1.0,verified,True,H&E,3.9383659888438936,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721630,,,train,sda-all,samples/GSE330224/GSM9721630,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8, ""life_stage"": 1.0}",, -GSM9721631,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4197,36601,counts,um,1.0,verified,True,H&E,3.896513543338856,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721631,,,train,sda-all,samples/GSE330224/GSM9721631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.74, ""life_stage"": 1.0}",, -GSM9721632,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4241,36601,counts,um,1.0,verified,True,H&E,3.8970950617810822,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721632,,,train,sda-all,samples/GSE330224/GSM9721632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.78, ""life_stage"": 1.0}",, +GSM9721631,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4197,36601,counts,um,1.0,verified,True,H&E,3.8965135433388554,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721631,,,train,sda-all,samples/GSE330224/GSM9721631,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.74, ""life_stage"": 1.0}",, +GSM9721632,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4241,36601,counts,um,1.0,verified,True,H&E,3.8970950617810827,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721632,,,train,sda-all,samples/GSE330224/GSM9721632,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.78, ""life_stage"": 1.0}",, GSM9721633,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,female,F,GSE330224:SD047/13,SD047/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3475,36601,counts,um,1.0,verified,True,H&E,3.936401868675475,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721633,,,train,sda-all,samples/GSE330224/GSM9721633,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.63, ""life_stage"": 1.0}",, GSM9721634,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4018,36601,counts,um,1.0,verified,True,H&E,3.938572780607701,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721634,,,train,sda-all,samples/GSE330224/GSM9721634,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721635,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3779,36601,counts,um,1.0,verified,True,H&E,3.925681451696569,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721635,,,train,sda-all,samples/GSE330224/GSM9721635,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.75, ""life_stage"": 1.0}",, -GSM9721636,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,73,male,M,GSE330224:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4792,36601,counts,um,1.0,verified,True,H&E,3.9224777225582654,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721636,,,train,sda-all,samples/GSE330224/GSM9721636,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.34, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9721635,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,55,male,M,GSE330224:SD034/19,SD034/19,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3779,36601,counts,um,1.0,verified,True,H&E,3.9256814516965686,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721635,,,train,sda-all,samples/GSE330224/GSM9721635,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.75, ""life_stage"": 1.0}",, +GSM9721636,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,73,male,M,GSE330224:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4792,36601,counts,um,1.0,verified,True,H&E,3.9224777225582663,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721636,,,train,sda-all,samples/GSE330224/GSM9721636,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.34, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721637,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,73,male,M,GSE330224:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4247,36601,counts,um,1.0,verified,True,H&E,3.9171074459401343,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721637,,,train,sda-all,samples/GSE330224/GSM9721637,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.35000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721638,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,73,male,M,GSE330224:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4697,36601,counts,um,1.0,verified,True,H&E,3.905121759195869,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721638,,,train,sda-all,samples/GSE330224/GSM9721638,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721639,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,73,male,M,GSE330224:SD006/17,SD006/17,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3953,36601,counts,um,1.0,verified,True,H&E,3.881986065462449,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721639,,,train,sda-all,samples/GSE330224/GSM9721639,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721640,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4456,36601,counts,um,1.0,verified,True,H&E,3.901537641220136,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721640,,,train,sda-all,samples/GSE330224/GSM9721640,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721641,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3408,36601,counts,um,1.0,verified,True,H&E,3.910759440483789,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721641,,,train,sda-all,samples/GSE330224/GSM9721641,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721642,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,47,female,F,GSE330224:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4504,36601,counts,um,1.0,verified,True,H&E,3.8637463986546474,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721642,,,train,sda-all,samples/GSE330224/GSM9721642,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, -GSM9721643,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4727,36601,counts,um,1.0,verified,True,H&E,3.902101344141145,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721643,,,train,sda-all,samples/GSE330224/GSM9721643,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.74, ""life_stage"": 1.0}",, -GSM9721644,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,47,female,F,GSE330224:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4396,36601,counts,um,1.0,verified,True,H&E,3.924334443485967,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721644,,,train,sda-all,samples/GSE330224/GSM9721644,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.62, ""life_stage"": 1.0}",, +GSM9721642,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,47,female,F,GSE330224:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4504,36601,counts,um,1.0,verified,True,H&E,3.8637463986546465,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721642,,,train,sda-all,samples/GSE330224/GSM9721642,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, +GSM9721643,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:SD008/13,SD008/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4727,36601,counts,um,1.0,verified,True,H&E,3.9021013441411445,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721643,,,train,sda-all,samples/GSE330224/GSM9721643,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.74, ""life_stage"": 1.0}",, +GSM9721644,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,47,female,F,GSE330224:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4396,36601,counts,um,1.0,verified,True,H&E,3.9243344434859666,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721644,,,train,sda-all,samples/GSE330224/GSM9721644,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.62, ""life_stage"": 1.0}",, GSM9721645,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,47,female,F,GSE330224:SD012/13,SD012/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4483,36601,counts,um,1.0,verified,True,H&E,3.892783706640866,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721645,,,train,sda-all,samples/GSE330224/GSM9721645,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.77, ""life_stage"": 1.0}",, GSM9721646,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4842,36601,counts,um,1.0,verified,True,H&E,3.931353017630463,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721646,,,train,sda-all,samples/GSE330224/GSM9721646,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.54, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721647,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4830,36601,counts,um,1.0,verified,True,H&E,4.536115256694819,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721647,,,train,sda-all,samples/GSE330224/GSM9721647,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721648,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,49,female,F,GSE330224:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3431,36601,counts,um,1.0,verified,True,H&E,3.9087953141198986,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721648,,,train,sda-all,samples/GSE330224/GSM9721648,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721649,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4557,36601,counts,um,1.0,verified,True,H&E,3.8894627312219536,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721649,,,train,sda-all,samples/GSE330224/GSM9721649,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.39, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721650,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4467,36601,counts,um,1.0,verified,True,H&E,3.914882155717364,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721650,,,train,sda-all,samples/GSE330224/GSM9721650,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721651,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,49,female,F,GSE330224:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4944,36601,counts,um,1.0,verified,True,H&E,3.896875271027143,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721651,,,train,sda-all,samples/GSE330224/GSM9721651,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, +GSM9721650,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:SD014/16,SD014/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4467,36601,counts,um,1.0,verified,True,H&E,3.9148821557173643,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721650,,,train,sda-all,samples/GSE330224/GSM9721650,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.36, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9721651,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,49,female,F,GSE330224:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4944,36601,counts,um,1.0,verified,True,H&E,3.8968752710271426,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721651,,,train,sda-all,samples/GSE330224/GSM9721651,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, GSM9721652,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,49,female,F,GSE330224:SD015/16,SD015/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4468,36601,counts,um,1.0,verified,True,H&E,3.942321985876636,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721652,,,train,sda-all,samples/GSE330224/GSM9721652,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, -GSM9721653,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4285,36601,counts,um,1.0,verified,True,H&E,3.920932964317129,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721653,,,train,sda-all,samples/GSE330224/GSM9721653,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721654,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3851,36601,counts,um,1.0,verified,True,H&E,3.896485651820848,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721654,,,train,sda-all,samples/GSE330224/GSM9721654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.88, ""life_stage"": 1.0}",, -GSM9721655,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,66,female,F,GSE330224:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4032,36601,counts,um,1.0,verified,True,H&E,3.943273792305056,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721655,,,train,sda-all,samples/GSE330224/GSM9721655,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM9721656,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,66,female,F,GSE330224:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4136,36601,counts,um,1.0,verified,True,H&E,3.908156683108425,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721656,,,train,sda-all,samples/GSE330224/GSM9721656,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",, -GSM9721657,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4142,36601,counts,um,1.0,verified,True,H&E,3.908959013622893,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721657,,,train,sda-all,samples/GSE330224/GSM9721657,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721653,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4285,36601,counts,um,1.0,verified,True,H&E,3.9209329643171285,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721653,,,train,sda-all,samples/GSE330224/GSM9721653,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721654,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3851,36601,counts,um,1.0,verified,True,H&E,3.8964856518208477,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721654,,,train,sda-all,samples/GSE330224/GSM9721654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.88, ""life_stage"": 1.0}",, +GSM9721655,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,66,female,F,GSE330224:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4032,36601,counts,um,1.0,verified,True,H&E,3.9432737923050563,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721655,,,train,sda-all,samples/GSE330224/GSM9721655,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM9721656,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,66,female,F,GSE330224:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4136,36601,counts,um,1.0,verified,True,H&E,3.9081566831084253,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721656,,,train,sda-all,samples/GSE330224/GSM9721656,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",, +GSM9721657,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD026/12,SD026/12,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4142,36601,counts,um,1.0,verified,True,H&E,3.9089590136228924,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721657,,,train,sda-all,samples/GSE330224/GSM9721657,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721658,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,66,female,F,GSE330224:SD049/15,SD049/15,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4470,36601,counts,um,1.0,verified,True,H&E,3.927923411275761,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721658,,,train,sda-all,samples/GSE330224/GSM9721658,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721659,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4220,36601,counts,um,1.0,verified,True,H&E,3.930032281172579,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721659,,,train,sda-all,samples/GSE330224/GSM9721659,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.74, ""life_stage"": 1.0}",, -GSM9721660,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4946,36601,counts,um,1.0,verified,True,H&E,3.93438758937494,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721660,,,train,sda-all,samples/GSE330224/GSM9721660,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.76, ""life_stage"": 1.0}",, +GSM9721660,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4946,36601,counts,um,1.0,verified,True,H&E,3.9343875893749396,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721660,,,train,sda-all,samples/GSE330224/GSM9721660,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.76, ""life_stage"": 1.0}",, GSM9721661,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3541,36601,counts,um,1.0,verified,True,H&E,3.9274820560548367,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721661,,,train,sda-all,samples/GSE330224/GSM9721661,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, -GSM9721662,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4296,36601,counts,um,1.0,verified,True,H&E,3.930672029810333,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721662,,,train,sda-all,samples/GSE330224/GSM9721662,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.56, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721663,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4505,36601,counts,um,1.0,verified,True,H&E,3.938811021913464,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721663,,,train,sda-all,samples/GSE330224/GSM9721663,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, -GSM9721664,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,63,male,M,GSE330224:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3824,36601,counts,um,1.0,verified,True,H&E,3.952334913150701,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721664,,,train,sda-all,samples/GSE330224/GSM9721664,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.78, ""life_stage"": 1.0}",, +GSM9721662,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4296,36601,counts,um,1.0,verified,True,H&E,3.9306720298103324,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721662,,,train,sda-all,samples/GSE330224/GSM9721662,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.56, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9721663,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4505,36601,counts,um,1.0,verified,True,H&E,3.9388110219134638,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721663,,,train,sda-all,samples/GSE330224/GSM9721663,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, +GSM9721664,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,63,male,M,GSE330224:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3824,36601,counts,um,1.0,verified,True,H&E,3.9523349131507013,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721664,,,train,sda-all,samples/GSE330224/GSM9721664,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.78, ""life_stage"": 1.0}",, GSM9721665,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,63,male,M,GSE330224:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4121,36601,counts,um,1.0,verified,True,H&E,3.932065562659565,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721665,,,train,sda-all,samples/GSE330224/GSM9721665,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, -GSM9721666,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4269,36601,counts,um,1.0,verified,True,H&E,3.935081611913816,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721666,,,train,sda-all,samples/GSE330224/GSM9721666,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, -GSM9721667,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4577,36601,counts,um,1.0,verified,True,H&E,3.92822051403168,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721667,,,train,sda-all,samples/GSE330224/GSM9721667,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9721666,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4269,36601,counts,um,1.0,verified,True,H&E,3.9350816119138163,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721666,,,train,sda-all,samples/GSE330224/GSM9721666,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.61, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, +GSM9721667,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,"Non-neurological control, MS",,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:SD011/18,SD011/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4577,36601,counts,um,1.0,verified,True,H&E,3.9282205140316804,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721667,,,train,sda-all,samples/GSE330224/GSM9721667,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.8300000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9721668,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,63,male,M,GSE330224:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4712,36601,counts,um,1.0,verified,True,H&E,3.9502808483323,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721668,,,train,sda-all,samples/GSE330224/GSM9721668,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.64, ""life_stage"": 1.0}",, -GSM9721669,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,63,male,M,GSE330224:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4888,36601,counts,um,1.0,verified,True,H&E,3.940198454453879,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721669,,,train,sda-all,samples/GSE330224/GSM9721669,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 1.0}",, +GSM9721669,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,63,male,M,GSE330224:SD030/18,SD030/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4888,36601,counts,um,1.0,verified,True,H&E,3.9401984544538786,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721669,,,train,sda-all,samples/GSE330224/GSM9721669,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 1.0}",, GSM9721670,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD010/14,SD010/14,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4946,36601,counts,um,1.0,verified,True,H&E,3.919888535342243,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721670,,,train,sda-all,samples/GSE330224/GSM9721670,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.7000000000000001, ""life_stage"": 1.0}",, -GSM9721671,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD010/14,SD010/14,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4975,36601,counts,um,1.0,verified,True,H&E,3.927052851667298,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721671,,,train,sda-all,samples/GSE330224/GSM9721671,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9, ""life_stage"": 1.0}",, +GSM9721671,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD010/14,SD010/14,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4975,36601,counts,um,1.0,verified,True,H&E,3.9270528516672982,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721671,,,train,sda-all,samples/GSE330224/GSM9721671,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9, ""life_stage"": 1.0}",, GSM9721672,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD010/14,SD010/14,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4857,36601,counts,um,1.0,verified,True,H&E,3.945305471518055,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721672,,,train,sda-all,samples/GSE330224/GSM9721672,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM9721673,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD010/14,SD010/14,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4852,36601,counts,um,1.0,verified,True,H&E,3.9476646682051593,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721673,,,train,sda-all,samples/GSE330224/GSM9721673,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9721674,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUGG230KV0,NEUGG230KV0,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4078,36601,counts,um,1.0,verified,True,H&E,3.8992609956040623,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721674,,,train,sda-all,samples/GSE330224/GSM9721674,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11315,117 +11315,117 @@ GSM9721675,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721676,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4383,36601,counts,um,1.0,verified,True,H&E,3.856743671586534,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721676,,,train,sda-all,samples/GSE330224/GSM9721676,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9721677,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4614,36601,counts,um,1.0,verified,True,H&E,3.917176110345185,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721677,,,train,sda-all,samples/GSE330224/GSM9721677,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.63, ""life_stage"": 1.0}",, GSM9721678,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:SD006/13,SD006/13,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4034,36601,counts,um,1.0,verified,True,H&E,3.961808367027013,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721678,,,train,sda-all,samples/GSE330224/GSM9721678,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.68, ""life_stage"": 1.0}",, -GSM9721679,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4771,36601,counts,um,1.0,verified,True,H&E,3.881235327835384,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721679,,,train,sda-all,samples/GSE330224/GSM9721679,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, -GSM9721680,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3952,36601,counts,um,1.0,verified,True,H&E,3.889065041104089,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721680,,,train,sda-all,samples/GSE330224/GSM9721680,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, +GSM9721679,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4771,36601,counts,um,1.0,verified,True,H&E,3.8812353278353835,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721679,,,train,sda-all,samples/GSE330224/GSM9721679,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, +GSM9721680,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3952,36601,counts,um,1.0,verified,True,H&E,3.8890650411040886,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721680,,,train,sda-all,samples/GSE330224/GSM9721680,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9721681,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4952,36601,counts,um,1.0,verified,True,H&E,3.8568151965124655,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721681,,,train,sda-all,samples/GSE330224/GSM9721681,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9721682,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3962,36601,counts,um,1.0,verified,True,H&E,3.8780484241789193,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721682,,,train,sda-all,samples/GSE330224/GSM9721682,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721683,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4601,36601,counts,um,1.0,verified,True,H&E,3.8913632061287142,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721683,,,train,sda-all,samples/GSE330224/GSM9721683,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, -GSM9721684,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4018,36601,counts,um,1.0,verified,True,H&E,3.882366709095873,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721684,,,train,sda-all,samples/GSE330224/GSM9721684,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM9721683,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4601,36601,counts,um,1.0,verified,True,H&E,3.8913632061287147,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721683,,,train,sda-all,samples/GSE330224/GSM9721683,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, +GSM9721684,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4018,36601,counts,um,1.0,verified,True,H&E,3.8823667090958733,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721684,,,train,sda-all,samples/GSE330224/GSM9721684,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721685,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4695,36601,counts,um,1.0,verified,True,H&E,3.855857873445461,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721685,,,train,sda-all,samples/GSE330224/GSM9721685,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721686,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3876,36601,counts,um,1.0,verified,True,H&E,3.8901544469690914,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721686,,,train,sda-all,samples/GSE330224/GSM9721686,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9721687,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4220,36601,counts,um,1.0,verified,True,H&E,3.855420105014708,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721687,,,train,sda-all,samples/GSE330224/GSM9721687,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9721687,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4220,36601,counts,um,1.0,verified,True,H&E,3.8554201050147077,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721687,,,train,sda-all,samples/GSE330224/GSM9721687,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721688,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3883,36601,counts,um,1.0,verified,True,H&E,3.84572761831102,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721688,,,train,sda-all,samples/GSE330224/GSM9721688,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721689,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3383,36601,counts,um,1.0,verified,True,H&E,3.825797862727564,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721689,,,train,sda-all,samples/GSE330224/GSM9721689,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721689,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3383,36601,counts,um,1.0,verified,True,H&E,3.8257978627275637,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721689,,,train,sda-all,samples/GSE330224/GSM9721689,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721690,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4457,36601,counts,um,1.0,verified,True,H&E,3.8241479323179592,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721690,,,train,sda-all,samples/GSE330224/GSM9721690,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721691,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.8812490752202655,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721691,,,train,sda-all,samples/GSE330224/GSM9721691,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721692,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUXF746MEU,NEUXF746MEU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4946,36601,counts,um,1.0,verified,True,H&E,3.860513857194805,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721692,,,train,sda-all,samples/GSE330224/GSM9721692,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721693,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2230,36601,counts,um,1.0,verified,True,H&E,3.8805258523188577,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721693,,,train,sda-all,samples/GSE330224/GSM9721693,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721694,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUAJ995AXE,NEUAJ995AXE,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4842,36601,counts,um,1.0,verified,True,H&E,3.911390460988297,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721694,,,train,sda-all,samples/GSE330224/GSM9721694,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721695,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4150,36601,counts,um,1.0,verified,True,H&E,3.909616248701787,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721695,,,train,sda-all,samples/GSE330224/GSM9721695,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721696,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4119,36601,counts,um,1.0,verified,True,H&E,3.924534371394308,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721696,,,train,sda-all,samples/GSE330224/GSM9721696,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9721696,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4119,36601,counts,um,1.0,verified,True,H&E,3.9245343713943077,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721696,,,train,sda-all,samples/GSE330224/GSM9721696,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721697,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4404,36601,counts,um,1.0,verified,True,H&E,3.903549537786024,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721697,,,train,sda-all,samples/GSE330224/GSM9721697,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721698,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3032,36601,counts,um,1.0,verified,True,H&E,3.9296946559320234,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721698,,,train,sda-all,samples/GSE330224/GSM9721698,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721699,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUAV181KYK,NEUAV181KYK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3309,36601,counts,um,1.0,verified,True,H&E,3.957210696743721,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721699,,,train,sda-all,samples/GSE330224/GSM9721699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721700,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4448,36601,counts,um,1.0,verified,True,H&E,3.923232603800496,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721700,,,train,sda-all,samples/GSE330224/GSM9721700,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721701,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4121,36601,counts,um,1.0,verified,True,H&E,3.935754615103052,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721701,,,train,sda-all,samples/GSE330224/GSM9721701,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721698,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3032,36601,counts,um,1.0,verified,True,H&E,3.9296946559320225,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721698,,,train,sda-all,samples/GSE330224/GSM9721698,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721699,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUAV181KYK,NEUAV181KYK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3309,36601,counts,um,1.0,verified,True,H&E,3.9572106967437213,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721699,,,train,sda-all,samples/GSE330224/GSM9721699,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721700,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4448,36601,counts,um,1.0,verified,True,H&E,3.9232326038004963,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721700,,,train,sda-all,samples/GSE330224/GSM9721700,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721701,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4121,36601,counts,um,1.0,verified,True,H&E,3.9357546151030522,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721701,,,train,sda-all,samples/GSE330224/GSM9721701,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721702,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUAV181KYK,NEUAV181KYK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2647,36601,counts,um,1.0,verified,True,H&E,3.885654789705273,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721702,,,train,sda-all,samples/GSE330224/GSM9721702,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721703,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUAV181KYK,NEUAV181KYK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3832,36601,counts,um,1.0,verified,True,H&E,3.9270231204700456,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721703,,,train,sda-all,samples/GSE330224/GSM9721703,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721704,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4087,36601,counts,um,1.0,verified,True,H&E,3.88950961636853,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721704,,,train,sda-all,samples/GSE330224/GSM9721704,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721705,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3614,36601,counts,um,1.0,verified,True,H&E,3.913115439709129,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721705,,,train,sda-all,samples/GSE330224/GSM9721705,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721705,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,female,F,GSE330224:NEUGT049MJ1,NEUGT049MJ1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3614,36601,counts,um,1.0,verified,True,H&E,3.9131154397091286,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721705,,,train,sda-all,samples/GSE330224/GSM9721705,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721706,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4941,36601,counts,um,1.0,verified,True,H&E,3.9306410680063375,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721706,,,train,sda-all,samples/GSE330224/GSM9721706,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721707,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4615,36601,counts,um,1.0,verified,True,H&E,3.926881895150528,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721707,,,train,sda-all,samples/GSE330224/GSM9721707,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721708,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4972,36601,counts,um,1.0,verified,True,H&E,3.965058580554747,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721708,,,train,sda-all,samples/GSE330224/GSM9721708,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721709,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4991,36601,counts,um,1.0,verified,True,H&E,3.9770979313563104,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721709,,,train,sda-all,samples/GSE330224/GSM9721709,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721710,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4630,36601,counts,um,1.0,verified,True,H&E,3.929215992545101,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721710,,,train,sda-all,samples/GSE330224/GSM9721710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721711,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.938919390496724,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721711,,,train,sda-all,samples/GSE330224/GSM9721711,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721712,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4956,36601,counts,um,1.0,verified,True,H&E,3.903179779603704,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721712,,,train,sda-all,samples/GSE330224/GSM9721712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721710,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4630,36601,counts,um,1.0,verified,True,H&E,3.9292159925451005,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721710,,,train,sda-all,samples/GSE330224/GSM9721710,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721711,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.9389193904967237,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721711,,,train,sda-all,samples/GSE330224/GSM9721711,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721712,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4956,36601,counts,um,1.0,verified,True,H&E,3.9031797796037044,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721712,,,train,sda-all,samples/GSE330224/GSM9721712,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721713,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4818,36601,counts,um,1.0,verified,True,H&E,3.9154096212711056,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721713,,,train,sda-all,samples/GSE330224/GSM9721713,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721714,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4722,36601,counts,um,1.0,verified,True,H&E,3.918928104152551,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721714,,,train,sda-all,samples/GSE330224/GSM9721714,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721715,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.931577198315661,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721715,,,train,sda-all,samples/GSE330224/GSM9721715,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721716,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4931,36601,counts,um,1.0,verified,True,H&E,3.958578443160024,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721716,,,train,sda-all,samples/GSE330224/GSM9721716,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721717,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4108,36601,counts,um,1.0,verified,True,H&E,3.939246336167874,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721717,,,train,sda-all,samples/GSE330224/GSM9721717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721718,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4812,36601,counts,um,1.0,verified,True,H&E,3.945364571799052,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721718,,,train,sda-all,samples/GSE330224/GSM9721718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721716,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4931,36601,counts,um,1.0,verified,True,H&E,3.9585784431600235,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721716,,,train,sda-all,samples/GSE330224/GSM9721716,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721717,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4108,36601,counts,um,1.0,verified,True,H&E,3.9392463361678742,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721717,,,train,sda-all,samples/GSE330224/GSM9721717,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721718,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUWD570BTK,NEUWD570BTK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4812,36601,counts,um,1.0,verified,True,H&E,3.9453645717990518,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721718,,,train,sda-all,samples/GSE330224/GSM9721718,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721719,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.911442276264034,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721719,,,train,sda-all,samples/GSE330224/GSM9721719,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721720,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,male,M,GSE330224:NEUVM032BF2,NEUVM032BF2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4978,36601,counts,um,1.0,verified,True,H&E,3.91182004980159,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721720,,,train,sda-all,samples/GSE330224/GSM9721720,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721721,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,59,male,M,GSE330224:NEUWC334RTZ,NEUWC334RTZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4448,36601,counts,um,1.0,verified,True,H&E,3.956664113417151,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721721,,,train,sda-all,samples/GSE330224/GSM9721721,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721722,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,59,male,M,GSE330224:NEUWC334RTZ,NEUWC334RTZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4572,36601,counts,um,1.0,verified,True,H&E,3.9831478088764096,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721722,,,train,sda-all,samples/GSE330224/GSM9721722,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721723,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,59,male,M,GSE330224:NEUWC334RTZ,NEUWC334RTZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4579,36601,counts,um,1.0,verified,True,H&E,3.906426267487017,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721723,,,train,sda-all,samples/GSE330224/GSM9721723,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721724,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,59,male,M,GSE330224:NEUWC334RTZ,NEUWC334RTZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4398,36601,counts,um,1.0,verified,True,H&E,3.916120767808027,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721724,,,train,sda-all,samples/GSE330224/GSM9721724,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9721725,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:NEUXH792ZDW,NEUXH792ZDW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4620,36601,counts,um,1.0,verified,True,H&E,3.89306625943194,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721725,,,train,sda-all,samples/GSE330224/GSM9721725,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721725,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:NEUXH792ZDW,NEUXH792ZDW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4620,36601,counts,um,1.0,verified,True,H&E,3.8930662594319396,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721725,,,train,sda-all,samples/GSE330224/GSM9721725,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721726,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:NEUXH792ZDW,NEUXH792ZDW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4558,36601,counts,um,1.0,verified,True,H&E,3.900792371176228,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721726,,,train,sda-all,samples/GSE330224/GSM9721726,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721727,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64.02,female,F,GSE330224:NEUHZ641WRK,NEUHZ641WRK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4903,36601,counts,um,1.0,verified,True,H&E,3.919131965872795,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721727,,,train,sda-all,samples/GSE330224/GSM9721727,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721728,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64.02,female,F,GSE330224:NEUHZ641WRK,NEUHZ641WRK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4990,36601,counts,um,1.0,verified,True,H&E,3.85743107475808,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721728,,,train,sda-all,samples/GSE330224/GSM9721728,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721729,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:NEUXH792ZDW,NEUXH792ZDW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4694,36601,counts,um,1.0,verified,True,H&E,3.90376846568108,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721729,,,train,sda-all,samples/GSE330224/GSM9721729,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9721728,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64.02,female,F,GSE330224:NEUHZ641WRK,NEUHZ641WRK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4990,36601,counts,um,1.0,verified,True,H&E,3.8574310747580802,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721728,,,train,sda-all,samples/GSE330224/GSM9721728,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721729,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:NEUXH792ZDW,NEUXH792ZDW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4694,36601,counts,um,1.0,verified,True,H&E,3.9037684656810803,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721729,,,train,sda-all,samples/GSE330224/GSM9721729,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9721730,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,male,M,GSE330224:NEUXH792ZDW,NEUXH792ZDW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4640,36601,counts,um,1.0,verified,True,H&E,3.871462416804938,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721730,,,train,sda-all,samples/GSE330224/GSM9721730,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721731,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64.02,female,F,GSE330224:NEUHZ641WRK,NEUHZ641WRK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4263,36601,counts,um,1.0,verified,True,H&E,3.891913622822466,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721731,,,train,sda-all,samples/GSE330224/GSM9721731,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721732,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64.02,female,F,GSE330224:NEUHZ641WRK,NEUHZ641WRK,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3918,36601,counts,um,1.0,verified,True,H&E,3.8837592889411607,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721732,,,train,sda-all,samples/GSE330224/GSM9721732,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9721733,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4521,36601,counts,um,1.0,verified,True,H&E,3.912784464241159,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721733,,,train,sda-all,samples/GSE330224/GSM9721733,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721734,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4154,36601,counts,um,1.0,verified,True,H&E,3.905025040771944,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721734,,,train,sda-all,samples/GSE330224/GSM9721734,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721733,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4521,36601,counts,um,1.0,verified,True,H&E,3.9127844642411587,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721733,,,train,sda-all,samples/GSE330224/GSM9721733,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721734,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4154,36601,counts,um,1.0,verified,True,H&E,3.9050250407719442,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721734,,,train,sda-all,samples/GSE330224/GSM9721734,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721735,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4909,36601,counts,um,1.0,verified,True,H&E,3.918485316769232,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721735,,,train,sda-all,samples/GSE330224/GSM9721735,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721736,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,43,male,M,GSE330224:NEULU857ERQ,NEULU857ERQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4850,36601,counts,um,1.0,verified,True,H&E,3.890758171564677,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721736,,,train,sda-all,samples/GSE330224/GSM9721736,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721737,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3836,36601,counts,um,1.0,verified,True,H&E,3.910165433824194,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721737,,,train,sda-all,samples/GSE330224/GSM9721737,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721738,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.916692153355212,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721738,,,train,sda-all,samples/GSE330224/GSM9721738,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721738,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.9166921533552115,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721738,,,train,sda-all,samples/GSE330224/GSM9721738,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721739,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4923,36601,counts,um,1.0,verified,True,H&E,3.919872349513773,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721739,,,train,sda-all,samples/GSE330224/GSM9721739,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721740,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,61,female,F,GSE330224:NEUJK532EBW,NEUJK532EBW,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4933,36601,counts,um,1.0,verified,True,H&E,3.9383290518099647,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721740,,,train,sda-all,samples/GSE330224/GSM9721740,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721757,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4739,36601,counts,um,1.0,verified,True,H&E,3.9077325785049215,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721757,,,train,sda-all,samples/GSE330224/GSM9721757,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721758,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4333,36601,counts,um,1.0,verified,True,H&E,3.9426285305201314,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721758,,,train,sda-all,samples/GSE330224/GSM9721758,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721759,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4124,36601,counts,um,1.0,verified,True,H&E,3.923764385618665,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721759,,,train,sda-all,samples/GSE330224/GSM9721759,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9721760,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4397,36601,counts,um,1.0,verified,True,H&E,3.9347164972375,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721760,,,train,sda-all,samples/GSE330224/GSM9721760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721759,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4124,36601,counts,um,1.0,verified,True,H&E,3.9237643856186653,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721759,,,train,sda-all,samples/GSE330224/GSM9721759,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9721760,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4397,36601,counts,um,1.0,verified,True,H&E,3.9347164972374995,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721760,,,train,sda-all,samples/GSE330224/GSM9721760,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721761,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,72,male,M,GSE330224:NEUXD265LJ8,NEUXD265LJ8,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4072,36601,counts,um,1.0,verified,True,H&E,3.926531860020496,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721761,,,train,sda-all,samples/GSE330224/GSM9721761,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721762,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,72,male,M,GSE330224:NEUXD265LJ8,NEUXD265LJ8,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4601,36601,counts,um,1.0,verified,True,H&E,3.934689457840964,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721762,,,train,sda-all,samples/GSE330224/GSM9721762,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721763,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,72,male,M,GSE330224:NEUXD265LJ8,NEUXD265LJ8,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3733,36601,counts,um,1.0,verified,True,H&E,3.9465398778537937,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721763,,,train,sda-all,samples/GSE330224/GSM9721763,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721764,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUHC994KV4,NEUHC994KV4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4692,36601,counts,um,1.0,verified,True,H&E,3.951726607328189,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721764,,,train,sda-all,samples/GSE330224/GSM9721764,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721765,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUHC994KV4,NEUHC994KV4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4950,36601,counts,um,1.0,verified,True,H&E,3.91348513897837,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721765,,,train,sda-all,samples/GSE330224/GSM9721765,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721766,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4009,36601,counts,um,1.0,verified,True,H&E,3.932851160452468,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721766,,,train,sda-all,samples/GSE330224/GSM9721766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721765,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUHC994KV4,NEUHC994KV4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4950,36601,counts,um,1.0,verified,True,H&E,3.9134851389783702,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721765,,,train,sda-all,samples/GSE330224/GSM9721765,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721766,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4009,36601,counts,um,1.0,verified,True,H&E,3.9328511604524676,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721766,,,train,sda-all,samples/GSE330224/GSM9721766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721767,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3956,36601,counts,um,1.0,verified,True,H&E,3.9303472288901022,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721767,,,train,sda-all,samples/GSE330224/GSM9721767,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721768,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUHC994KV4,NEUHC994KV4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4593,36601,counts,um,1.0,verified,True,H&E,3.9320846306769592,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721768,,,train,sda-all,samples/GSE330224/GSM9721768,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721769,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUHC994KV4,NEUHC994KV4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4810,36601,counts,um,1.0,verified,True,H&E,3.9574814985406377,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721769,,,train,sda-all,samples/GSE330224/GSM9721769,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9721770,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4074,36601,counts,um,1.0,verified,True,H&E,3.954074214901491,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721770,,,train,sda-all,samples/GSE330224/GSM9721770,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721771,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4221,36601,counts,um,1.0,verified,True,H&E,3.939442390418842,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721771,,,train,sda-all,samples/GSE330224/GSM9721771,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721771,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4221,36601,counts,um,1.0,verified,True,H&E,3.9394423904188423,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721771,,,train,sda-all,samples/GSE330224/GSM9721771,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721772,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,46,male,M,GSE330224:NEUGD051YM7,NEUGD051YM7,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4504,36601,counts,um,1.0,verified,True,H&E,3.932658016811341,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721772,,,train,sda-all,samples/GSE330224/GSM9721772,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721773,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,46,male,M,GSE330224:NEUGD051YM7,NEUGD051YM7,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3651,36601,counts,um,1.0,verified,True,H&E,3.9513610201113134,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721773,,,train,sda-all,samples/GSE330224/GSM9721773,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721773,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,46,male,M,GSE330224:NEUGD051YM7,NEUGD051YM7,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3651,36601,counts,um,1.0,verified,True,H&E,3.9513610201113143,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721773,,,train,sda-all,samples/GSE330224/GSM9721773,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721774,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3885,36601,counts,um,1.0,verified,True,H&E,3.9337864715218736,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721774,,,train,sda-all,samples/GSE330224/GSM9721774,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721775,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4452,36601,counts,um,1.0,verified,True,H&E,3.930322682468228,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721775,,,train,sda-all,samples/GSE330224/GSM9721775,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721775,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4452,36601,counts,um,1.0,verified,True,H&E,3.9303226824682276,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721775,,,train,sda-all,samples/GSE330224/GSM9721775,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721776,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,46,male,M,GSE330224:NEUGD051YM7,NEUGD051YM7,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3262,36601,counts,um,1.0,verified,True,H&E,3.9628950159071294,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721776,,,train,sda-all,samples/GSE330224/GSM9721776,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721777,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,46,male,M,GSE330224:NEUGD051YM7,NEUGD051YM7,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3295,36601,counts,um,1.0,verified,True,H&E,3.939635204189321,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721777,,,train,sda-all,samples/GSE330224/GSM9721777,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM9721778,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3826,36601,counts,um,1.0,verified,True,H&E,3.9488682353284217,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721778,,,train,sda-all,samples/GSE330224/GSM9721778,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721779,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4746,36601,counts,um,1.0,verified,True,H&E,3.925283317246441,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721779,,,train,sda-all,samples/GSE330224/GSM9721779,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721779,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4746,36601,counts,um,1.0,verified,True,H&E,3.9252833172464405,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721779,,,train,sda-all,samples/GSE330224/GSM9721779,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721780,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4185,36601,counts,um,1.0,verified,True,H&E,3.89236016762313,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721780,,,train,sda-all,samples/GSE330224/GSM9721780,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721781,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4123,36601,counts,um,1.0,verified,True,H&E,3.932231931938845,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721781,,,train,sda-all,samples/GSE330224/GSM9721781,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9721782,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUFR417RN4,NEUFR417RN4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3355,36601,counts,um,1.0,verified,True,H&E,3.9265930901469113,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721782,,,train,sda-all,samples/GSE330224/GSM9721782,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 0.99}",, GSM9721783,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUFR417RN4,NEUFR417RN4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3807,36601,counts,um,1.0,verified,True,H&E,3.9539105336755376,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721783,,,train,sda-all,samples/GSE330224/GSM9721783,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721784,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,79,female,F,GSE330224:NEUYJ579GT6,NEUYJ579GT6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4506,36601,counts,um,1.0,verified,True,H&E,3.9549507559916792,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721784,,,train,sda-all,samples/GSE330224/GSM9721784,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721785,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,79,female,F,GSE330224:NEUYJ579GT6,NEUYJ579GT6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4875,36601,counts,um,1.0,verified,True,H&E,3.957602022707392,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721785,,,train,sda-all,samples/GSE330224/GSM9721785,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721785,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,79,female,F,GSE330224:NEUYJ579GT6,NEUYJ579GT6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4875,36601,counts,um,1.0,verified,True,H&E,3.9576020227073916,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721785,,,train,sda-all,samples/GSE330224/GSM9721785,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721786,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4416,36601,counts,um,1.0,verified,True,H&E,3.936468940003593,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721786,,,train,sda-all,samples/GSE330224/GSM9721786,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721787,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4199,36601,counts,um,1.0,verified,True,H&E,3.94788832055062,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721787,,,train,sda-all,samples/GSE330224/GSM9721787,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9721788,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,79,female,F,GSE330224:NEUYJ579GT6,NEUYJ579GT6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3207,36601,counts,um,1.0,verified,True,H&E,3.959616382295712,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721788,,,train,sda-all,samples/GSE330224/GSM9721788,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721788,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,79,female,F,GSE330224:NEUYJ579GT6,NEUYJ579GT6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3207,36601,counts,um,1.0,verified,True,H&E,3.9596163822957116,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721788,,,train,sda-all,samples/GSE330224/GSM9721788,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721789,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,79,female,F,GSE330224:NEUYJ579GT6,NEUYJ579GT6,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4862,36601,counts,um,1.0,verified,True,H&E,3.984588398830031,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721789,,,train,sda-all,samples/GSE330224/GSM9721789,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721790,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4602,36601,counts,um,1.0,verified,True,H&E,3.984563099550727,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721790,,,train,sda-all,samples/GSE330224/GSM9721790,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721791,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4673,36601,counts,um,1.0,verified,True,H&E,3.9358784999102494,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721791,,,train,sda-all,samples/GSE330224/GSM9721791,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721791,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4673,36601,counts,um,1.0,verified,True,H&E,3.9358784999102503,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721791,,,train,sda-all,samples/GSE330224/GSM9721791,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721792,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,female,F,GSE330224:NEUZF190CT2,NEUZF190CT2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4214,36601,counts,um,1.0,verified,True,H&E,3.947547648639948,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721792,,,train,sda-all,samples/GSE330224/GSM9721792,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721793,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,female,F,GSE330224:NEUZF190CT2,NEUZF190CT2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4390,36601,counts,um,1.0,verified,True,H&E,3.940855226217952,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721793,,,train,sda-all,samples/GSE330224/GSM9721793,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, +GSM9721793,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,female,F,GSE330224:NEUZF190CT2,NEUZF190CT2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4390,36601,counts,um,1.0,verified,True,H&E,3.9408552262179524,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721793,,,train,sda-all,samples/GSE330224/GSM9721793,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9721794,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUPN968LVX,NEUPN968LVX,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4116,36601,counts,um,1.0,verified,True,H&E,3.965368564963052,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721794,,,train,sda-all,samples/GSE330224/GSM9721794,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721795,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUPN968LVX,NEUPN968LVX,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3878,36601,counts,um,1.0,verified,True,H&E,3.955779859885941,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721795,,,train,sda-all,samples/GSE330224/GSM9721795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721795,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUPN968LVX,NEUPN968LVX,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3878,36601,counts,um,1.0,verified,True,H&E,3.9557798598859404,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721795,,,train,sda-all,samples/GSE330224/GSM9721795,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721796,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,female,F,GSE330224:NEUZF190CT2,NEUZF190CT2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4021,36601,counts,um,1.0,verified,True,H&E,4.032742881895467,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721796,,,train,sda-all,samples/GSE330224/GSM9721796,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721797,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,70,female,F,GSE330224:NEUZF190CT2,NEUZF190CT2,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2741,36601,counts,um,1.0,verified,True,H&E,3.941132395969211,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721797,,,train,sda-all,samples/GSE330224/GSM9721797,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9721798,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUPN968LVX,NEUPN968LVX,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3760,36601,counts,um,1.0,verified,True,H&E,3.956290266745499,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721798,,,train,sda-all,samples/GSE330224/GSM9721798,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721799,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUPN968LVX,NEUPN968LVX,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4827,36601,counts,um,1.0,verified,True,H&E,4.051800128350943,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721799,,,train,sda-all,samples/GSE330224/GSM9721799,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721800,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4688,36601,counts,um,1.0,verified,True,H&E,3.930117999477982,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721800,,,train,sda-all,samples/GSE330224/GSM9721800,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721801,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4639,36601,counts,um,1.0,verified,True,H&E,3.963899634853687,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721801,,,train,sda-all,samples/GSE330224/GSM9721801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.85, ""life_stage"": 1.0}",, -GSM9721802,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUFR417RN4,NEUFR417RN4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3620,36601,counts,um,1.0,verified,True,H&E,3.946901168020304,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721802,,,train,sda-all,samples/GSE330224/GSM9721802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, -GSM9721803,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUFR417RN4,NEUFR417RN4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4934,36601,counts,um,1.0,verified,True,H&E,3.937581268777501,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721803,,,train,sda-all,samples/GSE330224/GSM9721803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, +GSM9721801,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976;MONDO:0017276,amyotrophic lateral sclerosis;frontotemporal dementia,disease,luna,ALS-FTD,,aged,age rule: bare number read as years,aged,68,female,F,GSE330224:NEUKT470MVZ,NEUKT470MVZ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4639,36601,counts,um,1.0,verified,True,H&E,3.9638996348536866,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721801,,,train,sda-all,samples/GSE330224/GSM9721801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.85, ""life_stage"": 1.0}",, +GSM9721802,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUFR417RN4,NEUFR417RN4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3620,36601,counts,um,1.0,verified,True,H&E,3.9469011680203034,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721802,,,train,sda-all,samples/GSE330224/GSM9721802,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9721803,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,64,male,M,GSE330224:NEUFR417RN4,NEUFR417RN4,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4934,36601,counts,um,1.0,verified,True,H&E,3.9375812687775005,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721803,,,train,sda-all,samples/GSE330224/GSM9721803,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721804,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4019,36601,counts,um,1.0,verified,True,H&E,3.918207930734208,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721804,,,train,sda-all,samples/GSE330224/GSM9721804,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, -GSM9721805,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4239,36601,counts,um,1.0,verified,True,H&E,3.929858179188333,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721805,,,train,sda-all,samples/GSE330224/GSM9721805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM9721805,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4239,36601,counts,um,1.0,verified,True,H&E,3.9298581791883325,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721805,,,train,sda-all,samples/GSE330224/GSM9721805,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721806,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4140,36601,counts,um,1.0,verified,True,H&E,3.9704619104426304,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721806,,,train,sda-all,samples/GSE330224/GSM9721806,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9721807,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,65,male,M,GSE330224:NEUDJ612NZM,NEUDJ612NZM,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3963,36601,counts,um,1.0,verified,True,H&E,3.949203317884086,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721807,,,train,sda-all,samples/GSE330224/GSM9721807,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721808,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4947,36601,counts,um,1.0,verified,True,H&E,4.013508602155177,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721808,,,train,sda-all,samples/GSE330224/GSM9721808,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -11433,43 +11433,43 @@ GSM9721809,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721810,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4794,36601,counts,um,1.0,verified,True,H&E,4.032430665934507,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721810,,,train,sda-all,samples/GSE330224/GSM9721810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721811,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUCY461UB1,NEUCY461UB1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4973,36601,counts,um,1.0,verified,True,H&E,4.0068999933779645,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721811,,,train,sda-all,samples/GSE330224/GSM9721811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721812,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:NEURD732NWQ,NEURD732NWQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4847,36601,counts,um,1.0,verified,True,H&E,3.9249476649318673,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721812,,,train,sda-all,samples/GSE330224/GSM9721812,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721813,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:NEURD732NWQ,NEURD732NWQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4860,36601,counts,um,1.0,verified,True,H&E,3.985680403492252,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721813,,,train,sda-all,samples/GSE330224/GSM9721813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9721813,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:NEURD732NWQ,NEURD732NWQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4860,36601,counts,um,1.0,verified,True,H&E,3.9856804034922515,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721813,,,train,sda-all,samples/GSE330224/GSM9721813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721814,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,57,male,M,GSE330224:NEURD732NWQ,NEURD732NWQ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4916,36601,counts,um,1.0,verified,True,H&E,3.906855213116718,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721814,,,train,sda-all,samples/GSE330224/GSM9721814,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721815,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUXV447YXF,NEUXV447YXF,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3815,36601,counts,um,1.0,verified,True,H&E,3.9876186441169774,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721815,,,train,sda-all,samples/GSE330224/GSM9721815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721816,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUXV447YXF,NEUXV447YXF,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3406,36601,counts,um,1.0,verified,True,H&E,3.985143532030854,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721816,,,train,sda-all,samples/GSE330224/GSM9721816,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721817,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUPH726JJJ,NEUPH726JJJ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3564,36601,counts,um,1.0,verified,True,H&E,3.960996024765736,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721817,,,train,sda-all,samples/GSE330224/GSM9721817,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9721818,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUPH726JJJ,NEUPH726JJJ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3460,36601,counts,um,1.0,verified,True,H&E,3.971343365870052,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721818,,,train,sda-all,samples/GSE330224/GSM9721818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, +GSM9721818,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUPH726JJJ,NEUPH726JJJ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3460,36601,counts,um,1.0,verified,True,H&E,3.9713433658700517,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721818,,,train,sda-all,samples/GSE330224/GSM9721818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9721819,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUXV447YXF,NEUXV447YXF,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4290,36601,counts,um,1.0,verified,True,H&E,3.928793156494199,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721819,,,train,sda-all,samples/GSE330224/GSM9721819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9721820,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUXV447YXF,NEUXV447YXF,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3406,36601,counts,um,1.0,verified,True,H&E,3.9164376114592176,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721820,,,train,sda-all,samples/GSE330224/GSM9721820,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9400000000000001, ""life_stage"": 1.0}",, GSM9721821,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Medial,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUPH726JJJ,NEUPH726JJJ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2960,36601,counts,um,1.0,verified,True,H&E,3.944354988992396,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721821,,,train,sda-all,samples/GSE330224/GSM9721821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.91, ""life_stage"": 1.0}",, GSM9721822,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4193,36601,counts,um,1.0,verified,True,H&E,3.90625096835312,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721822,,,train,sda-all,samples/GSE330224/GSM9721822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9721823,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4128,36601,counts,um,1.0,verified,True,H&E,3.9063317386895138,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721823,,,train,sda-all,samples/GSE330224/GSM9721823,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721824,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3979,36601,counts,um,1.0,verified,True,H&E,3.891439212958231,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721824,,,train,sda-all,samples/GSE330224/GSM9721824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721824,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3979,36601,counts,um,1.0,verified,True,H&E,3.8914392129582307,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721824,,,train,sda-all,samples/GSE330224/GSM9721824,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721825,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4504,36601,counts,um,1.0,verified,True,H&E,3.899142327527079,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721825,,,train,sda-all,samples/GSE330224/GSM9721825,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721826,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4108,36601,counts,um,1.0,verified,True,H&E,3.928697541130549,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721826,,,train,sda-all,samples/GSE330224/GSM9721826,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721827,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4278,36601,counts,um,1.0,verified,True,H&E,3.93046787106586,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721827,,,train,sda-all,samples/GSE330224/GSM9721827,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721827,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4278,36601,counts,um,1.0,verified,True,H&E,3.9304678710658596,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721827,,,train,sda-all,samples/GSE330224/GSM9721827,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721828,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,59,male,M,GSE330224:NEUXW577JCD,NEUXW577JCD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4766,36601,counts,um,1.0,verified,True,H&E,3.9242417665260105,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721828,,,train,sda-all,samples/GSE330224/GSM9721828,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721829,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4466,36601,counts,um,1.0,verified,True,H&E,3.9555868526220177,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721829,,,train,sda-all,samples/GSE330224/GSM9721829,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721830,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4596,36601,counts,um,1.0,verified,True,H&E,3.922497414995018,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721830,,,train,sda-all,samples/GSE330224/GSM9721830,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9721830,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,60,male,M,GSE330224:NEUGA843KLV,NEUGA843KLV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4596,36601,counts,um,1.0,verified,True,H&E,3.9224974149950183,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721830,,,train,sda-all,samples/GSE330224/GSM9721830,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721831,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,59,male,M,GSE330224:NEUXW577JCD,NEUXW577JCD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4626,36601,counts,um,1.0,verified,True,H&E,3.931372263834568,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721831,,,train,sda-all,samples/GSE330224/GSM9721831,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721832,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,51,female,F,GSE330224:NY7075,NY7075,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4959,36601,counts,um,1.0,verified,True,H&E,3.956437973513443,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721832,,,train,sda-all,samples/GSE330224/GSM9721832,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721833,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,51,female,F,GSE330224:NY7075,NY7075,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4983,36601,counts,um,1.0,verified,True,H&E,3.931638315803112,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721833,,,train,sda-all,samples/GSE330224/GSM9721833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.5, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM9721834,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,34,female,F,GSE330224:NY7094,NY7094,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4955,36601,counts,um,1.0,verified,True,H&E,3.8835979299365535,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721834,,,train,sda-all,samples/GSE330224/GSM9721834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.54, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9721834,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,34,female,F,GSE330224:NY7094,NY7094,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4955,36601,counts,um,1.0,verified,True,H&E,3.8835979299365544,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721834,,,train,sda-all,samples/GSE330224/GSM9721834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.54, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721835,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,34,female,F,GSE330224:NY7094,NY7094,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4958,36601,counts,um,1.0,verified,True,H&E,3.881228271590543,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721835,,,train,sda-all,samples/GSE330224/GSM9721835,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.62, ""life_stage"": 1.0}",, GSM9721836,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,51,female,F,GSE330224:NY7075,NY7075,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4763,36601,counts,um,1.0,verified,True,H&E,3.8921101781148337,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721836,,,train,sda-all,samples/GSE330224/GSM9721836,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.6000000000000001, ""life_stage"": 1.0}",, -GSM9721837,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,51,female,F,GSE330224:NY7075,NY7075,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4986,36601,counts,um,1.0,verified,True,H&E,3.879875797919549,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721837,,,train,sda-all,samples/GSE330224/GSM9721837,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, -GSM9721838,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,34,female,F,GSE330224:NY7094,NY7094,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4950,36601,counts,um,1.0,verified,True,H&E,3.8815234689085374,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721838,,,train,sda-all,samples/GSE330224/GSM9721838,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.33, ""life_stage"": 1.0}",uberon,low_confidence_annotation +GSM9721837,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,51,female,F,GSE330224:NY7075,NY7075,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4986,36601,counts,um,1.0,verified,True,H&E,3.8798757979195493,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721837,,,train,sda-all,samples/GSE330224/GSM9721837,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.6900000000000001, ""life_stage"": 1.0}",, +GSM9721838,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,34,female,F,GSE330224:NY7094,NY7094,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4950,36601,counts,um,1.0,verified,True,H&E,3.8815234689085383,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721838,,,train,sda-all,samples/GSE330224/GSM9721838,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.33, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721839,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,34,female,F,GSE330224:NY7094,NY7094,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4803,36601,counts,um,1.0,verified,True,H&E,3.8971339208387112,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721839,,,train,sda-all,samples/GSE330224/GSM9721839,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721840,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4673,36601,counts,um,1.0,verified,True,H&E,3.886223221754625,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721840,,,train,sda-all,samples/GSE330224/GSM9721840,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721841,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4443,36601,counts,um,1.0,verified,True,H&E,3.869948773731124,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721841,,,train,sda-all,samples/GSE330224/GSM9721841,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721841,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4443,36601,counts,um,1.0,verified,True,H&E,3.8699487737311236,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721841,,,train,sda-all,samples/GSE330224/GSM9721841,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721842,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUBL101LGP,NEUBL101LGP,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4221,36601,counts,um,1.0,verified,True,H&E,3.88026724511731,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721842,,,train,sda-all,samples/GSE330224/GSM9721842,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721843,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4784,36601,counts,um,1.0,verified,True,H&E,3.9025695099238846,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721843,,,train,sda-all,samples/GSE330224/GSM9721843,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721844,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:SD004/16,SD004/16,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4781,36601,counts,um,1.0,verified,True,H&E,3.93916150216962,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721844,,,train,sda-all,samples/GSE330224/GSM9721844,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721845,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUBL101LGP,NEUBL101LGP,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4651,36601,counts,um,1.0,verified,True,H&E,3.956048273015538,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721845,,,train,sda-all,samples/GSE330224/GSM9721845,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721846,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,male,M,GSE330224:NEUBL101LGP,NEUBL101LGP,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4720,36601,counts,um,1.0,verified,True,H&E,3.900506370869296,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721846,,,train,sda-all,samples/GSE330224/GSM9721846,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721847,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4621,36601,counts,um,1.0,verified,True,H&E,3.925829120690428,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721847,,,train,sda-all,samples/GSE330224/GSM9721847,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721848,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4722,36601,counts,um,1.0,verified,True,H&E,3.933113398597983,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721848,,,train,sda-all,samples/GSE330224/GSM9721848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721849,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4590,36601,counts,um,1.0,verified,True,H&E,3.930373747380511,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721849,,,train,sda-all,samples/GSE330224/GSM9721849,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, +GSM9721848,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4722,36601,counts,um,1.0,verified,True,H&E,3.9331133985979827,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721848,,,train,sda-all,samples/GSE330224/GSM9721848,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721849,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4590,36601,counts,um,1.0,verified,True,H&E,3.9303737473805107,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721849,,,train,sda-all,samples/GSE330224/GSM9721849,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721850,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4850,36601,counts,um,1.0,verified,True,H&E,3.9756922515517785,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721850,,,train,sda-all,samples/GSE330224/GSM9721850,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.88, ""life_stage"": 1.0}",, GSM9721851,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2815,36601,counts,um,1.0,verified,True,H&E,3.923350639157875,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721851,,,train,sda-all,samples/GSE330224/GSM9721851,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721852,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4270,36601,counts,um,1.0,verified,True,H&E,3.9404557530420656,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721852,,,train,sda-all,samples/GSE330224/GSM9721852,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11477,9 +11477,9 @@ GSM9721853,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721854,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,85,male,M,GSE330224:NEULV205HP5,NEULV205HP5,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4988,36601,counts,um,1.0,verified,True,H&E,3.957594399145882,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721854,,,train,sda-all,samples/GSE330224/GSM9721854,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.89, ""life_stage"": 1.0}",, GSM9721855,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUEL766XR1,NEUEL766XR1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4991,36601,counts,um,1.0,verified,True,H&E,3.921710073942271,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721855,,,train,sda-all,samples/GSE330224/GSM9721855,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9721856,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUEL766XR1,NEUEL766XR1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3416,36601,counts,um,1.0,verified,True,H&E,3.8768805303727896,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721856,,,train,sda-all,samples/GSE330224/GSM9721856,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, -GSM9721857,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUEL766XR1,NEUEL766XR1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4399,36601,counts,um,1.0,verified,True,H&E,3.9071889157040234,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721857,,,train,sda-all,samples/GSE330224/GSM9721857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.88, ""life_stage"": 1.0}",, -GSM9721858,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4916,36601,counts,um,1.0,verified,True,H&E,3.9030689325555,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721858,,,train,sda-all,samples/GSE330224/GSM9721858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721859,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.885972961472384,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721859,,,train,sda-all,samples/GSE330224/GSM9721859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721857,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,67,male,M,GSE330224:NEUEL766XR1,NEUEL766XR1,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4399,36601,counts,um,1.0,verified,True,H&E,3.9071889157040225,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721857,,,train,sda-all,samples/GSE330224/GSM9721857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.88, ""life_stage"": 1.0}",, +GSM9721858,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4916,36601,counts,um,1.0,verified,True,H&E,3.9030689325554997,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721858,,,train,sda-all,samples/GSE330224/GSM9721858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721859,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.8859729614723837,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721859,,,train,sda-all,samples/GSE330224/GSM9721859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721860,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,female,F,GSE330224:NEUFU395MJD,NEUFU395MJD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3907,36601,counts,um,1.0,verified,True,H&E,3.884563662214831,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721860,,,train,sda-all,samples/GSE330224/GSM9721860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9721861,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,female,F,GSE330224:NEUFU395MJD,NEUFU395MJD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4344,36601,counts,um,1.0,verified,True,H&E,3.896179135541645,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721861,,,train,sda-all,samples/GSE330224/GSM9721861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721862,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,"ALS Spectrum MND, Other Neurological Disorders",,aged,age rule: bare number read as years,aged,69,male,M,GSE330224:NEUGJ562DR9,NEUGJ562DR9,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.865451711944526,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721862,,,train,sda-all,samples/GSE330224/GSM9721862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11488,12 +11488,12 @@ GSM9721864,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721865,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,76,female,F,GSE330224:NEUFU395MJD,NEUFU395MJD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3842,36601,counts,um,1.0,verified,True,H&E,3.8493416396011946,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721865,,,train,sda-all,samples/GSE330224/GSM9721865,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721866,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,52,male,M,GSE330224:NEUWT414AYT,NEUWT414AYT,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4946,36601,counts,um,1.0,verified,True,H&E,3.889445289312504,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721866,,,train,sda-all,samples/GSE330224/GSM9721866,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721867,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,52,male,M,GSE330224:NEUWT414AYT,NEUWT414AYT,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4983,36601,counts,um,1.0,verified,True,H&E,3.881746761591895,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721867,,,train,sda-all,samples/GSE330224/GSM9721867,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721868,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,52,male,M,GSE330224:NEUWT414AYT,NEUWT414AYT,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4991,36601,counts,um,1.0,verified,True,H&E,3.867322738597317,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721868,,,train,sda-all,samples/GSE330224/GSM9721868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721868,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,52,male,M,GSE330224:NEUWT414AYT,NEUWT414AYT,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4991,36601,counts,um,1.0,verified,True,H&E,3.8673227385973172,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721868,,,train,sda-all,samples/GSE330224/GSM9721868,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721869,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,adult,age rule: bare number read as years,adult,52,male,M,GSE330224:NEUWT414AYT,NEUWT414AYT,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4712,36601,counts,um,1.0,verified,True,H&E,3.924791529982416,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721869,,,train,sda-all,samples/GSE330224/GSM9721869,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721870,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4920,36601,counts,um,1.0,verified,True,H&E,3.911857051237817,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721870,,,train,sda-all,samples/GSE330224/GSM9721870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721871,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4451,36601,counts,um,1.0,verified,True,H&E,3.883557615527277,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721871,,,train,sda-all,samples/GSE330224/GSM9721871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9721872,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4502,36601,counts,um,1.0,verified,True,H&E,3.897308220704165,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721872,,,train,sda-all,samples/GSE330224/GSM9721872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9721873,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4211,36601,counts,um,1.0,verified,True,H&E,3.892428976347373,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721873,,,train,sda-all,samples/GSE330224/GSM9721873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9721870,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4920,36601,counts,um,1.0,verified,True,H&E,3.9118570512378166,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721870,,,train,sda-all,samples/GSE330224/GSM9721870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721871,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4451,36601,counts,um,1.0,verified,True,H&E,3.8835576155272764,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721871,,,train,sda-all,samples/GSE330224/GSM9721871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9721872,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4502,36601,counts,um,1.0,verified,True,H&E,3.8973082207041654,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721872,,,train,sda-all,samples/GSE330224/GSM9721872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9721873,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,80,male,M,GSE330224:NEUPG593UTV,NEUPG593UTV,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4211,36601,counts,um,1.0,verified,True,H&E,3.8924289763473734,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721873,,,train,sda-all,samples/GSE330224/GSM9721873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9721874,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,81,female,F,GSE330224:SD010/18,SD010/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4917,36601,counts,um,1.0,verified,True,H&E,3.897005054788699,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721874,,,train,sda-all,samples/GSE330224/GSM9721874,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721875,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,81,female,F,GSE330224:SD010/18,SD010/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4893,36601,counts,um,1.0,verified,True,H&E,3.900376601510334,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721875,,,train,sda-all,samples/GSE330224/GSM9721875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721876,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,81,female,F,GSE330224:SD010/18,SD010/18,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4884,36601,counts,um,1.0,verified,True,H&E,3.907282648234693,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721876,,,train,sda-all,samples/GSE330224/GSM9721876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11503,7 +11503,7 @@ GSM9721879,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721880,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,adult,age rule: bare number read as years,adult,62,female,F,GSE330224:NEUPH726JJJ,NEUPH726JJJ,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4838,36601,counts,um,1.0,verified,True,H&E,3.8715211802911433,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721880,,,train,sda-all,samples/GSE330224/GSM9721880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721881,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,68,male,M,GSE330224:NEUXV447YXF,NEUXV447YXF,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4551,36601,counts,um,1.0,verified,True,H&E,3.894256968123996,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721881,,,train,sda-all,samples/GSE330224/GSM9721881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.96, ""life_stage"": 1.0}",, GSM9721882,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3782,36601,counts,um,1.0,verified,True,H&E,3.8857558177435503,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721882,,,train,sda-all,samples/GSE330224/GSM9721882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9721883,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4727,36601,counts,um,1.0,verified,True,H&E,3.890775713913317,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721883,,,train,sda-all,samples/GSE330224/GSM9721883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721883,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4727,36601,counts,um,1.0,verified,True,H&E,3.8907757139133166,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721883,,,train,sda-all,samples/GSE330224/GSM9721883,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721884,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4851,36601,counts,um,1.0,verified,True,H&E,3.886863380800975,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721884,,,train,sda-all,samples/GSE330224/GSM9721884,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9721885,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,MONDO:0004976,amyotrophic lateral sclerosis,disease,luna,ALS,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NEUDM397JGD,NEUDM397JGD,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4925,36601,counts,um,1.0,verified,True,H&E,3.9008162051783226,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721885,,,train,sda-all,samples/GSE330224/GSM9721885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721886,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,71,male,M,GSE330224:NY7149,NY7149,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3411,36601,counts,um,1.0,verified,True,H&E,3.8860999508089766,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721886,,,train,sda-all,samples/GSE330224/GSM9721886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.41000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation @@ -11512,15 +11512,15 @@ GSM9721888,GSE330224,GSE330224,A multi-omics characterization of the human lumba GSM9721889,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4747,36601,counts,um,1.0,verified,True,H&E,3.893890516049536,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721889,,,train,sda-all,samples/GSE330224/GSM9721889,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721890,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4887,36601,counts,um,1.0,verified,True,H&E,3.890780362225121,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721890,,,train,sda-all,samples/GSE330224/GSM9721890,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721891,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E,3.912492182343667,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721891,,,train,sda-all,samples/GSE330224/GSM9721891,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9721892,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4687,36601,counts,um,1.0,verified,True,H&E,3.888531431311853,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721892,,,train,sda-all,samples/GSE330224/GSM9721892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9721893,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4800,36601,counts,um,1.0,verified,True,H&E,3.871108139192288,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721893,,,train,sda-all,samples/GSE330224/GSM9721893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9721892,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001851,cortex,Cortex_Motor_Lateral,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4687,36601,counts,um,1.0,verified,True,H&E,3.8885314313118533,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721892,,,train,sda-all,samples/GSE330224/GSM9721892,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.93, ""life_stage"": 1.0}",, +GSM9721893,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4800,36601,counts,um,1.0,verified,True,H&E,3.8711081391922884,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721893,,,train,sda-all,samples/GSE330224/GSM9721893,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721894,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spinal cord,luna,UBERON:0002792,lumbar spinal cord,Spinal_Cord_Lumbar,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,75,female,F,GSE330224:NEUCG659ERU,NEUCG659ERU,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4966,36601,counts,um,1.0,verified,True,H&E,3.8914275928908455,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721894,,,train,sda-all,samples/GSE330224/GSM9721894,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9721895,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NY7183,NY7183,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4354,36601,counts,um,1.0,verified,True,H&E,3.873781326496257,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721895,,,train,sda-all,samples/GSE330224/GSM9721895,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.46, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9721896,GSE330224,GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0013535,Brodmann (1909) area 4,Cortex_Motor_BA4,primary tissue,,,normal,luna,Non-neurological control,,aged,age rule: bare number read as years,aged,71,female,F,GSE330224:NY7183,NY7183,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2670,36601,counts,um,1.0,verified,True,H&E,3.8800084066236167,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9721896,,,train,sda-all,samples/GSE330224/GSM9721896,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.64, ""life_stage"": 1.0}",, GSM9730462,GSE330686,GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wild-type,adult,age rule: age with unit,adult,12-month-old,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,57883,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000093021332892,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42557563,,GSM9730462,,,train,sda-all,samples/GSE330686/GSM9730462,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9730463,GSE330686,GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005574,tauopathy,disease,luna,,Tau transgenic,adult,age rule: age with unit,adult,12-month-old,male,Male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,63003,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999803605391549,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42557563,,GSM9730463,,,train,sda-all,samples/GSE330686/GSM9730463,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9730464,GSE330686,GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,Wild-type,adult,age rule: age with unit,adult,12-month-old,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,72622,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000093999097609,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42557563,,GSM9730464,,,train,sda-all,samples/GSE330686/GSM9730464,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9730465,GSE330686,GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005574,tauopathy,disease,luna,,Tau transgenic,adult,age rule: age with unit,adult,12-month-old,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69038,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999877810361681,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42557563,,GSM9730465,,,train,sda-all,samples/GSE330686/GSM9730465,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9730465,GSE330686,GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,MONDO:0005574,tauopathy,disease,luna,,Tau transgenic,adult,age rule: age with unit,adult,12-month-old,female,Female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,69038,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998778103616814,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42557563,,GSM9730465,,,train,sda-all,samples/GSE330686/GSM9730465,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9733696,GSE330849,GSE330849,MERFISH spatial transcriptomic profiling of Sst+ interneurons in the postnatal mouse brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,neonatal or infant,age rule: postnatal day,neonatal or infant,P5,unknown,,,,fresh frozen,Fresh-frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,139637,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,42547805,,GSM9733696,,,train,sda-all,samples/GSE330849/GSM9733696,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9733697,GSE330849,GSE330849,MERFISH spatial transcriptomic profiling of Sst+ interneurons in the postnatal mouse brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,neonatal or infant,age rule: postnatal day,neonatal or infant,P5,unknown,,,,fresh frozen,Fresh-frozen,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,118952,550,counts,um,1.0,verified,False,,,ABSENT,ABSENT,VERIFIED,,,VERIFIED,,,,42547805,,GSM9733697,,,train,sda-all,samples/GSE330849/GSM9733697,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9734766,GSE330886,GSE330886,The challenges of single cell transcriptomics on difficult human tissue: the placenta [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,357577,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982773668979,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42466067,,GSM9734766,,,train,sda-all,samples/GSE330886/GSM9734766,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 1.0, ""life_stage"": 0.9400000000000001}",, @@ -11540,12 +11540,12 @@ GSM9736149,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underli GSM9736150,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,21966,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736150,,,train,sda-all,samples/GSE330953/GSM9736150,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736151,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47862,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736151,,,train,sda-all,samples/GSE330953/GSM9736151,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736152,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001153,caecum,Caecum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28371,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736152,,,train,sda-all,samples/GSE330953/GSM9736152,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9736153,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001153,caecum,Caecum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41098,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999897271531885,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736153,,,train,sda-all,samples/GSE330953/GSM9736153,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9736154,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28380,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999839272593681,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736154,,,train,sda-all,samples/GSE330953/GSM9736154,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9736153,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001153,caecum,Caecum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41098,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998972715318857,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736153,,,train,sda-all,samples/GSE330953/GSM9736153,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9736154,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28380,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998392725936813,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736154,,,train,sda-all,samples/GSE330953/GSM9736154,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736155,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,41309,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000141884222474,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736155,,,train,sda-all,samples/GSE330953/GSM9736155,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9736156,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24399,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896901142924,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736156,,,train,sda-all,samples/GSE330953/GSM9736156,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9736156,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24399,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998969011429245,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736156,,,train,sda-all,samples/GSE330953/GSM9736156,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736157,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001156,ascending colon,Ascending colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,39747,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999927632123067,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736157,,,train,sda-all,samples/GSE330953/GSM9736157,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9736158,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,53880,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999948464234178,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736158,,,train,sda-all,samples/GSE330953/GSM9736158,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9736158,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,53880,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999484642341785,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736158,,,train,sda-all,samples/GSE330953/GSM9736158,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736159,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,34963,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736159,,,train,sda-all,samples/GSE330953/GSM9736159,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736160,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,29139,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736160,,,train,sda-all,samples/GSE330953/GSM9736160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736161,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001156,ascending colon,Ascending colon,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,25263,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736161,,,train,sda-all,samples/GSE330953/GSM9736161,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -11565,14 +11565,14 @@ GSM9736174,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underli GSM9736175,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001158,descending colon,Descending colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35725,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736175,,,train,sda-all,samples/GSE330953/GSM9736175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736176,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,51458,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736176,,,train,sda-all,samples/GSE330953/GSM9736176,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736177,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Terminal ileum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,49342,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736177,,,train,sda-all,samples/GSE330953/GSM9736177,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9736178,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,No treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55499,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999965588437715,FAILED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736178,,,train,sda-all,samples/GSE330953/GSM9736178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9736178,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,No treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55499,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999655884377153,FAILED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736178,,,train,sda-all,samples/GSE330953/GSM9736178,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736179,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Terminal ileum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,35839,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000175210252302,FAILED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736179,,,train,sda-all,samples/GSE330953/GSM9736179,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9736180,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,No treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,48266,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736180,,,train,sda-all,samples/GSE330953/GSM9736180,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9736181,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16181,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736181,,,train,sda-all,samples/GSE330953/GSM9736181,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736182,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001158,descending colon,Descending colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16221,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736182,,,train,sda-all,samples/GSE330953/GSM9736182,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736183,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001158,descending colon,Descending colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,14689,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000208750835003,FAILED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736183,,,train,sda-all,samples/GSE330953/GSM9736183,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736184,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,colon,luna,UBERON:0001159,sigmoid colon,Sigmoid colon,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,28220,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499973321293712,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736184,,,train,sda-all,samples/GSE330953/GSM9736184,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9736185,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Terminal ileum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,76574,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999858086489833,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736185,,,train,sda-all,samples/GSE330953/GSM9736185,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9736185,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,small intestine,luna,UBERON:0002116,ileum,Terminal ileum,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,76574,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998580864898334,VERIFIED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736185,,,train,sda-all,samples/GSE330953/GSM9736185,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9736186,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005265,inflammatory bowel disease,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,18758,541,counts,um,1.0,verified,False,,,FAILED,PARTIAL,VERIFIED,,,VERIFIED,FAIL,,,42658927,,GSM9736186,,,train,sda-all,samples/GSE330953/GSM9736186,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9736187,GSE330953,GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,rectum,luna,UBERON:0001052,rectum,Rectum,primary tissue,MONDO:0005101,ulcerative colitis,disease,luna,,Treatment,not stated,luna,not stated,,unknown,,,,FFPE,Formalin-fixed paraffin-embedded,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,14580,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051482701812,FAILED,PARTIAL,VERIFIED,,,VERIFIED,PASS,,,42658927,,GSM9736187,,,train,sda-all,samples/GSE330953/GSM9736187,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9739520,GSE331133,GSE331133,Single-Cell and Spatial Multi-Omics Reveal Estrogen-Mediated Vaginal Wall Microenvironment Remodeling and a Perivascular Reparative Niche in Postmenopausal Pelvic Organ Prolapse,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0036523,wall of vagina,anterior vaginal wall,primary tissue,MONDO:0005039,reproductive system disorder,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,460658,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.638743483266041,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9739520,,,train,sda-all,samples/GSE331133/GSM9739520,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.37, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -11582,29 +11582,29 @@ GSM9742276,GSE331225,GSE331225,TRPV1–STAT3 signaling as a driver of lethal pat GSM9743253,GSE331286,GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,MI KO,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1830,19465,counts,um,1.0,verified,True,H&E,6.943672285993975,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9743253,,,train,sda-all,samples/GSE331286/GSM9743253,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9743255,GSE331286,GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,MI WT,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1998,19465,counts,um,1.0,verified,True,H&E,7.007603996837567,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9743255,,,train,sda-all,samples/GSE331286/GSM9743255,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9743259,GSE331286,GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,MI WT,not stated,luna,not stated,,female,Female,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1744,19465,counts,um,1.0,verified,True,H&E,6.942246637567191,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9743259,,,train,sda-all,samples/GSE331286/GSM9743259,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.98}",, -GSM9743262,GSE331286,GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,MI KO,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2415,19465,counts,um,1.0,verified,True,H&E,7.009153046547604,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9743262,,,train,sda-all,samples/GSE331286/GSM9743262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM9743262,GSE331286,GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,heart,luna,UBERON:0000948,heart,Heart,primary tissue,MONDO:0005068,myocardial infarction,disease,luna,,MI KO,not stated,luna,not stated,,male,Male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2415,19465,counts,um,1.0,verified,True,H&E,7.0091530465476035,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9743262,,,train,sda-all,samples/GSE331286/GSM9743262,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9744831,GSE331374,GSE331374,Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain/glioblastoma,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,,Naive,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2930,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.064661132810943,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42350396,,GSM9744831,,,train,sda-all,samples/GSE331374/GSM9744831,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9744832,GSE331374,GSE331374,Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain/glioblastoma,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,,Naive,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2287,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.077019559258785,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42350396,,GSM9744832,,,train,sda-all,samples/GSE331374/GSM9744832,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9744833,GSE331374,GSE331374,Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain/glioblastoma,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,,BRAFi/MEKi,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2555,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.071406681365135,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42350396,,GSM9744833,,,train,sda-all,samples/GSE331374/GSM9744833,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9744834,GSE331374,GSE331374,Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,brain/glioblastoma,tumour tissue,MONDO:0002501,brain glioblastoma,disease,luna,,Temozolomide,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3228,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.192366741348693,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42350396,,GSM9744834,,,train,sda-all,samples/GSE331374/GSM9744834,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9746006,GSE331446,GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006631,right atrium auricular region,right atrial appendage,primary tissue,MONDO:0005267,heart disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2153,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.598944275031855,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9746006,,,val,sda-all,samples/GSE331446/GSM9746006,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 0.23, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9746006,GSE331446,GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006631,right atrium auricular region,right atrial appendage,primary tissue,MONDO:0005267,heart disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2153,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.5989442750318545,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9746006,,,val,sda-all,samples/GSE331446/GSM9746006,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.99, ""disease_status"": 0.23, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9746007,GSE331446,GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006631,right atrium auricular region,right atrial appendage,primary tissue,MONDO:0004994,cardiomyopathy,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3383,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.597888124925952,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9746007,,,val,sda-all,samples/GSE331446/GSM9746007,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.35000000000000003, ""uberon"": 0.93, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9746008,GSE331446,GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006631,right atrium auricular region,right atrial appendage,primary tissue,MONDO:0005267,heart disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1990,17943,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9746008,,,val,sda-all,samples/GSE331446/GSM9746008,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.98, ""disease_status"": 0.19, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9746009,GSE331446,GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006631,right atrium auricular region,right atrial appendage,primary tissue,MONDO:0005267,heart disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2956,17943,counts,um,1.0,verified,True,H&E-like (heuristic),5.099164703505003,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9746009,,,val,sda-all,samples/GSE331446/GSM9746009,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.23, ""uberon"": 0.79, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9746010,GSE331446,GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,heart,luna,UBERON:0006631,right atrium auricular region,right atrial appendage,primary tissue,MONDO:0005267,heart disorder,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2133,17943,counts,um,1.0,verified,True,H&E-like (heuristic),4.090912857714803,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9746010,,,val,sda-all,samples/GSE331446/GSM9746010,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.17, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9749285,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Tumor,xenograft,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,812720,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999874623871614,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9749285,,,train,sda-all,samples/GSE331531/GSM9749285,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 0.99}",, -GSM9749287,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,235264,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999908821241003,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9749287,,,train,sda-all,samples/GSE331531/GSM9749287,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9749287,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,235264,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999088212410037,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9749287,,,train,sda-all,samples/GSE331531/GSM9749287,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9749288,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,other,luna,,,Tumor,xenograft,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,661550,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999935430549098,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM9749288,,,train,sda-all,samples/GSE331531/GSM9749288,sda-tissue-disease-2.3,"{""organ"": 0.9, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9982048,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,170021,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000144472880376,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9982048,,,train,sda-all,samples/GSE331531/GSM9982048,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM9982049,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1281532,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982733216687,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9982049,,,train,sda-all,samples/GSE331531/GSM9982049,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM9982050,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,173494,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999884383214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9982050,,,train,sda-all,samples/GSE331531/GSM9982050,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9982049,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1281532,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999827332166874,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9982049,,,train,sda-all,samples/GSE331531/GSM9982049,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9982050,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,173494,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998843832148765,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9982050,,,train,sda-all,samples/GSE331531/GSM9982050,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9982051,GSE331531,GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,709176,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103403450721,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9982051,,,train,sda-all,samples/GSE331531/GSM9982051,sda-tissue-disease-2.3,"{""organ"": 0.64, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9750808,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4571,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.7565131845344633,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750808,,,train,sda-all,samples/GSE332563/GSM9750808,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.61, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9750809,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4963,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8341433667262255,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750809,,,train,sda-all,samples/GSE332563/GSM9750809,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.5700000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9750810,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4988,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.62526274995065,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750810,,,train,sda-all,samples/GSE332563/GSM9750810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9750810,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4988,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.6252627499506502,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750810,,,train,sda-all,samples/GSE332563/GSM9750810,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9750811,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.97035170239624,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750811,,,train,sda-all,samples/GSE332563/GSM9750811,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM9750812,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4896,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.8135505361115487,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750812,,,train,sda-all,samples/GSE332563/GSM9750812,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9750813,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4867,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.77110228457,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750813,,,train,sda-all,samples/GSE332563/GSM9750813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9750813,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4867,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.7711022845700004,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750813,,,train,sda-all,samples/GSE332563/GSM9750813,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9750814,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4979,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.706672018808113,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750814,,,train,sda-all,samples/GSE332563/GSM9750814,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9750815,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4873,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.615600693053306,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750815,,,train,sda-all,samples/GSE332563/GSM9750815,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9750816,GSE332563,GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,spleen,luna,UBERON:0002106,spleen,Spleen,primary tissue,MONDO:0044903,myelofibrosis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,18085,counts,um,1.0,verified,True,H&E-like (heuristic),3.724458805458826,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9750816,,,train,sda-all,samples/GSE332563/GSM9750816,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11631,7 +11631,7 @@ GSM9846529,GSE332618,GSE332618,Identification and Characterization of Adrenergic GSM9846530,GSE332618,GSE332618,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,54700,18132,counts,um,1.0,verified,True,H&E-like (heuristic),4.67720421977008,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9846530,,,val,sda-all,samples/GSE332618/GSM9846530,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9846531,GSE332618,GSE332618,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,Tumor,tumour tissue,MONDO:0004992;MONDO:0005072,cancer;neuroblastoma,disease,luna,NBL,,not stated,luna,not stated,,unknown,,,,,,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,77363,18132,counts,um,1.0,verified,True,H&E-like (heuristic),4.674935065970432,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9846531,,,val,sda-all,samples/GSE332618/GSM9846531,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9752692,GSE332731,GSE332731,Local control of Cre-regulated genetic modeling in vivo using wireless implantable optoelectronics [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse Lung,primary tissue,,,disease,luna,,E-LightR-Cre + local optoelectronic illumination,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visium HD,,,bin,350126,19059,counts,um,1.0,verified,True,H&E,2.088215038292686,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9752692,,,train,sda-all,samples/GSE332731/GSM9752692,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.72, ""disease_status"": 0.51, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9752693,GSE332731,GSE332731,Local control of Cre-regulated genetic modeling in vivo using wireless implantable optoelectronics [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse Lung,primary tissue,,,disease,luna,,E-LightR-Cre + local optoelectronic illumination,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visium HD,,,bin,347278,19059,counts,um,1.0,verified,True,H&E,1.6642344059201737,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9752693,,,train,sda-all,samples/GSE332731/GSM9752693,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9752693,GSE332731,GSE332731,Local control of Cre-regulated genetic modeling in vivo using wireless implantable optoelectronics [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Mouse Lung,primary tissue,,,disease,luna,,E-LightR-Cre + local optoelectronic illumination,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,visium HD,,,bin,347278,19059,counts,um,1.0,verified,True,H&E,1.6642344059201735,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9752693,,,train,sda-all,samples/GSE332731/GSM9752693,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.65, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9754317,GSE332850,GSE332850,Xenium Spatial Transcriptomics Reveals the Mechanism of TGFBRIIDN-Armored GPC3-CAR-T Cells in Hepatocellular Carcinoma Patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Primary or metastatic lesions of hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16977,10029,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9754317,,,train,sda-all,samples/GSE332850/GSM9754317,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9754325,GSE332850,GSE332850,Xenium Spatial Transcriptomics Reveals the Mechanism of TGFBRIIDN-Armored GPC3-CAR-T Cells in Hepatocellular Carcinoma Patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Primary or metastatic lesions of hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,4436,10029,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9754325,,,train,sda-all,samples/GSE332850/GSM9754325,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 0.92, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9754328,GSE332850,GSE332850,Xenium Spatial Transcriptomics Reveals the Mechanism of TGFBRIIDN-Armored GPC3-CAR-T Cells in Hepatocellular Carcinoma Patients,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Primary or metastatic lesions of hepatocellular carcinoma,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24966,10029,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9754328,,,train,sda-all,samples/GSE332850/GSM9754328,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -11640,18 +11640,18 @@ GSM9759690,GSE333244,GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac GSM9759691,GSE333244,GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac Disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,small intestine,luna,UBERON:0002114,duodenum,Duodenum,primary tissue,MONDO:0002866;MONDO:0005130,duodenal disorder;celiac disease,disease,luna,Celiac disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,156800,18085,unknown,pixel,,unresolved,True,H&E-like (heuristic),,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9759691,,,train,sda-all,samples/GSE333244/GSM9759691,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9759692,GSE333244,GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac Disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,small intestine,luna,UBERON:0002114,duodenum,Duodenum,primary tissue,MONDO:0002866;MONDO:0005130,duodenal disorder;celiac disease,disease,luna,Celiac disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,112895,18085,unknown,pixel,,unresolved,True,H&E-like (heuristic),,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9759692,,,train,sda-all,samples/GSE333244/GSM9759692,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9759693,GSE333244,GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac Disease [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,small intestine,luna,UBERON:0002114,duodenum,Duodenum,primary tissue,MONDO:0002866;MONDO:0005130,duodenal disorder;celiac disease,disease,luna,Celiac disease,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,50317,18085,unknown,pixel,,unresolved,True,H&E-like (heuristic),,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9759693,,,train,sda-all,samples/GSE333244/GSM9759693,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9762113,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2281,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.94731437987514,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762113,,,val,sda-all,samples/GSE333401/GSM9762113,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",disease_status,low_confidence_annotation +GSM9762113,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2281,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9473143798751402,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762113,,,val,sda-all,samples/GSE333401/GSM9762113,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",disease_status,low_confidence_annotation GSM9762114,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1372,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.92341276939329,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762114,,,val,sda-all,samples/GSE333401/GSM9762114,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.31, ""uberon"": 0.99, ""life_stage"": 0.81}",disease_status,low_confidence_annotation GSM9762115,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1624,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.952356475954416,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762115,,,val,sda-all,samples/GSE333401/GSM9762115,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 0.79}",disease_status,low_confidence_annotation GSM9762116,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2087,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9296154749879793,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762116,,,val,sda-all,samples/GSE333401/GSM9762116,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 0.58}",disease_status;life_stage,low_confidence_annotation GSM9762117,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1237,32285,counts,um,1.0,verified,True,fluorescence: magenta (heuristic),3.973283754618098,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762117,,,val,sda-all,samples/GSE333401/GSM9762117,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.52, ""uberon"": 1.0, ""life_stage"": 0.58}",disease_status;life_stage,low_confidence_annotation GSM9762118,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,859,32285,counts,um,1.0,verified,True,fluorescence: magenta (heuristic),3.9695357640142688,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762118,,,val,sda-all,samples/GSE333401/GSM9762118,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.41000000000000003, ""uberon"": 1.0, ""life_stage"": 0.65}",disease_status,low_confidence_annotation -GSM9762119,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1861,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.935433810918256,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762119,,,val,sda-all,samples/GSE333401/GSM9762119,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.71}",disease_status,low_confidence_annotation +GSM9762119,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,CT,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1861,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9354338109182554,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762119,,,val,sda-all,samples/GSE333401/GSM9762119,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.4, ""uberon"": 1.0, ""life_stage"": 0.71}",disease_status,low_confidence_annotation GSM9762120,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2080,32285,counts,um,1.0,verified,True,H&E-like (heuristic),4.03599210848384,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762120,,,val,sda-all,samples/GSE333401/GSM9762120,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.98, ""life_stage"": 0.81}",, GSM9762121,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1961,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9037917573085226,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762121,,,val,sda-all,samples/GSE333401/GSM9762121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.73}",, -GSM9762122,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1365,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.962057639070992,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762122,,,val,sda-all,samples/GSE333401/GSM9762122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.86}",, +GSM9762122,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1365,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9620576390709923,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762122,,,val,sda-all,samples/GSE333401/GSM9762122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 0.86}",, GSM9762123,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1598,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.937800569746858,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762123,,,val,sda-all,samples/GSE333401/GSM9762123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 0.76}",, -GSM9762124,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1587,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9240241273675776,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762124,,,val,sda-all,samples/GSE333401/GSM9762124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 0.72}",, +GSM9762124,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1587,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.9240241273675784,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762124,,,val,sda-all,samples/GSE333401/GSM9762124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 0.72}",, GSM9762125,GSE333401,GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,placenta,luna,UBERON:0001987,placenta,Placenta,primary tissue,,,perturbation,luna,,DBP,fetal,luna,fetal,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2411,32285,counts,um,1.0,verified,True,H&E-like (heuristic),3.942943303187447,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9762125,,,val,sda-all,samples/GSE333401/GSM9762125,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 0.7000000000000001}",, GSM9765770,GSE333479,GSE333479,A unified spatial transcriptome profiling of ten mouse organs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0000059,large intestine,large intestine,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,28685,27275,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42374103,,GSM9765770,,,train,sda-all,samples/GSE333479/GSM9765770,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9765771,GSE333479,GSE333479,A unified spatial transcriptome profiling of ten mouse organs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0000059,large intestine,large intestine,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,29310,24869,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42374103,,GSM9765771,,,train,sda-all,samples/GSE333479/GSM9765771,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.98, ""life_stage"": 1.0}",, @@ -11675,7 +11675,7 @@ GSM9765788,GSE333479,GSE333479,A unified spatial transcriptome profiling of ten GSM9765789,GSE333479,GSE333479,A unified spatial transcriptome profiling of ten mouse organs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,ovary,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,51698,27378,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42374103,,GSM9765789,,,train,sda-all,samples/GSE333479/GSM9765789,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9765790,GSE333479,GSE333479,A unified spatial transcriptome profiling of ten mouse organs,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,ovary,luna,UBERON:0000992,ovary,ovary,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,46599,24674,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,42374103,,GSM9765790,,,train,sda-all,samples/GSE333479/GSM9765790,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9767741,GSE333529,GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007915,systemic lupus erythematosus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,769,18085,counts,um,1.0,verified,True,H&E,4.42566673798747,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42679049,,GSM9767741,,,train,sda-all,samples/GSE333529/GSM9767741,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9767742,GSE333529,GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007915,systemic lupus erythematosus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,955,18085,counts,um,1.0,verified,True,H&E,3.2647170106598558,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42679049,,GSM9767742,,,train,sda-all,samples/GSE333529/GSM9767742,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9767742,GSE333529,GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007915,systemic lupus erythematosus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,955,18085,counts,um,1.0,verified,True,H&E,3.2647170106598553,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42679049,,GSM9767742,,,train,sda-all,samples/GSE333529/GSM9767742,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9767743,GSE333529,GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007915,systemic lupus erythematosus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,900,18085,counts,um,1.0,verified,True,H&E,4.075396827384211,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42679049,,GSM9767743,,,train,sda-all,samples/GSE333529/GSM9767743,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.71, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9767744,GSE333529,GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0007915,systemic lupus erythematosus,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,830,18085,counts,um,1.0,verified,True,H&E,5.80898419011643,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42679049,,GSM9767744,,,train,sda-all,samples/GSE333529/GSM9767744,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9769919,GSE333617,GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018229,Stevens-Johnson syndrome,disease,luna,SJS/TEN,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2296,18085,counts,um,1.0,verified,True,H&E-like (heuristic),6.996819919949294,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9769919,,,train,sda-all,samples/GSE333617/GSM9769919,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.68, ""life_stage"": 1.0}",, @@ -11684,9 +11684,9 @@ GSM9769921,GSE333617,GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytot GSM9769922,GSE333617,GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,skin,primary tissue,MONDO:0018229,Stevens-Johnson syndrome,disease,luna,HD,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3862,18085,counts,um,1.0,verified,True,H&E-like (heuristic),10.731588419458864,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9769922,,,train,sda-all,samples/GSE333617/GSM9769922,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 0.47000000000000003, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9457959,GSE333685,GSE333685,Vascular smooth muscle cell state trajectories mediate molecular mechanisms of coronary disease risk,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0000947,aorta,Aorta,primary tissue,MONDO:0005010,coronary artery disorder,disease,luna,,"ApoE-/-, Rosa26-Tdt+/+",not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,49909,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.499999059938332,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,41844614,,GSM9457959,,,train,sda-all,samples/GSE333685/GSM9457959,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9770943,GSE333693,GSE333693,Rat thymic epithelium-free areas are specialized medullary niches enriched for mature thymocytes and distinct stromal subsets,Rattus norvegicus,10116,Norway rat,Rattus norvegicus,10116,,False,False,GEO organism field,Rattus norvegicus,,thymus,luna,UBERON:0002370,thymus,Thymus,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,796801,38507,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9770943,,,train,sda-all,samples/GSE333693/GSM9770943,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9771950,GSE333735,GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,,lung,luna,UBERON:0002048,lung,Embryonic lung,primary tissue,,,normal,luna,,WT,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1018,16128,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42446999,,GSM9771950,,,train,sda-all,samples/GSE333735/GSM9771950,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, -GSM9771951,GSE333735,GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,,lung,luna,UBERON:0002048,lung,Embryonic lung,primary tissue,,,normal,luna,,WT,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1091,15916,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42446999,,GSM9771951,,,train,sda-all,samples/GSE333735/GSM9771951,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9771952,GSE333735,GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,,lung,luna,UBERON:0002048,lung,Embryonic lung,primary tissue,,,normal,luna,,WT,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,1421,20128,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42446999,,GSM9771952,,,train,sda-all,samples/GSE333735/GSM9771952,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9771950,GSE333735,GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,,lung,luna,UBERON:0002048,lung,Embryonic lung,primary tissue,,,normal,luna,,WT,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1018,16128,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42446999,,GSM9771950,,,train,sda-all,samples/GSE333735/GSM9771950,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, +GSM9771951,GSE333735,GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,,lung,luna,UBERON:0002048,lung,Embryonic lung,primary tissue,,,normal,luna,,WT,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1091,15916,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42446999,,GSM9771951,,,train,sda-all,samples/GSE333735/GSM9771951,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9771952,GSE333735,GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,Gallus gallus,9031,chicken,Gallus gallus,9031,,False,False,GEO organism field,Gallus gallus,,lung,luna,UBERON:0002048,lung,Embryonic lung,primary tissue,,,normal,luna,,WT,embryonic,luna,embryonic,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,1421,20128,unknown,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42446999,,GSM9771952,,,train,sda-all,samples/GSE333735/GSM9771952,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9771965,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,non-diabetic,,aged,age rule: bare number read as years,aged,73,female,Female,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,547317,300,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9771965,,,train,sda-all,samples/GSE333737/GSM9771965,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9771966,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,non-diabetic,,aged,age rule: bare number read as years,aged,75,male,Male,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,634912,300,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9771966,,,train,sda-all,samples/GSE333737/GSM9771966,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9771967,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,,,normal,luna,non-diabetic,,adult,age rule: bare number read as years,adult,41,female,Female,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,426366,300,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9771967,,,train,sda-all,samples/GSE333737/GSM9771967,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, @@ -11699,7 +11699,7 @@ GSM9771973,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extra GSM9771974,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,type 2 diabetic,,aged,age rule: bare number read as years,aged,71,male,Male,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,207477,300,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9771974,,,train,sda-all,samples/GSE333737/GSM9771974,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9771975,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,type 2 diabetic,,aged,age rule: bare number read as years,aged,69,female,Female,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,514236,300,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9771975,,,train,sda-all,samples/GSE333737/GSM9771975,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9771976,GSE333737,GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,pancreas,luna,UBERON:0001264,pancreas,pancreas,primary tissue,MONDO:0005015,diabetes mellitus,disease,luna,type 2 diabetic,,adult,age rule: bare number read as years,adult,58,female,Female,,,FFPE,FFPE,MERFISH/MERSCOPE,release v3,MERSCOPE,imaging-based,MERSCOPE,,,cell,217547,300,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9771976,,,train,sda-all,samples/GSE333737/GSM9771976,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9775942,GSE333851,GSE333851,Spatial Glyco-Codes Define Human Liver Pathology and Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,other,2498,89292,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42465518,,GSM9775942,,,train,sda-all,samples/GSE333851/GSM9775942,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9775942,GSE333851,GSE333851,Spatial Glyco-Codes Define Human Liver Pathology and Progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,tumour tissue,MONDO:0007256,hepatocellular carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,other,2498,89292,unknown,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,42465518,,GSM9775942,,,train,sda-all,samples/GSE333851/GSM9775942,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9779857,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3698,19465,counts,um,1.0,verified,True,H&E-like (heuristic),7.018676815297874,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779857,,,train,sda-all,samples/GSE334067/GSM9779857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.16, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779858,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3695,19465,counts,um,1.0,verified,True,H&E-like (heuristic),6.976169419837443,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779858,,,train,sda-all,samples/GSE334067/GSM9779858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.07, ""uberon"": 0.96, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779859,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate (Luna: perturbation),,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3483,19465,counts,um,1.0,verified,True,H&E-like (heuristic),7.015891289672782,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779859,,,train,sda-all,samples/GSE334067/GSM9779859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.17, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -11721,7 +11721,7 @@ GSM9779874,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomi GSM9779875,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate (Luna: perturbation),,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8024,19465,counts,um,1.0,verified,True,H&E-like (heuristic),6.9683243095217815,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779875,,,train,sda-all,samples/GSE334067/GSM9779875,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779876,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,luna,,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,8557,19465,counts,um,1.0,verified,True,H&E-like (heuristic),7.023051130563352,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779876,,,train,sda-all,samples/GSE334067/GSM9779876,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.13, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779877,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,luna,,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,6531,19465,counts,um,1.0,verified,True,H&E-like (heuristic),6.971961900399629,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779877,,,train,sda-all,samples/GSE334067/GSM9779877,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.21, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9779878,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate (Luna: perturbation),,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5855,19465,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),7.033089546173136,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779878,,,train,sda-all,samples/GSE334067/GSM9779878,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9779878,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate (Luna: perturbation),,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5855,19465,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),7.0330895461731355,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779878,,,train,sda-all,samples/GSE334067/GSM9779878,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.35000000000000003, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779879,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,luna,,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7148,19465,counts,um,1.0,verified,True,H&E-like (heuristic),7.028094575486524,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779879,,,train,sda-all,samples/GSE334067/GSM9779879,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.32, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779880,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate (Luna: perturbation),,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9695,19465,counts,um,1.0,verified,True,H&E-like (heuristic),7.088065144280274,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779880,,,train,sda-all,samples/GSE334067/GSM9779880,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.92, ""disease_status"": 0.17, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9779881,GSE334067,GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,colon,luna,UBERON:0001155,colon,Colon,primary tissue,MONDO:0005292,colitis,disease,mondo_predicate (Luna: perturbation),,ENU,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10078,19465,counts,um,1.0,verified,True,H&E-like (heuristic),7.0181119307671445,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42521760,,GSM9779881,,,train,sda-all,samples/GSE334067/GSM9779881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.2, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -11768,14 +11768,14 @@ GSM9807708,GSE335181,GSE335181,Spatial transcriptomic analysis of patient- and c GSM9807709,GSE335181,GSE335181,Spatial transcriptomic analysis of patient- and cell line-derived high grade serous ovarian cancer spheroids,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peritoneum,luna,UBERON:0007795,ascitic fluid,"Ascites Derived Patient High Grade Serous Ovarian Cancer (ID's 526, 530, 498) microarray",organoid,MONDO:0008170,ovarian cancer,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4963,18132,counts,um,1.0,verified,True,H&E-like (heuristic),3.025470642610841,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9807709,,,train,sda-all,samples/GSE335181/GSM9807709,sda-tissue-disease-2.3,"{""organ"": 0.5, ""sample_kind"": 0.76, ""disease_status"": 0.99, ""uberon"": 0.52, ""life_stage"": 0.99}",organ;uberon,low_confidence_annotation GSM9808287,GSE335211,GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,Kras (LSL-G12D) control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,371513,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000079083122445,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9808287,,,train,sda-all,samples/GSE335211/GSM9808287,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9808288,GSE335211,GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,Kras (LSL-G12D) + H3K36M,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,306612,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890799576992,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9808288,,,train,sda-all,samples/GSE335211/GSM9808288,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9808289,GSE335211,GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,Kras (LSL-G12D) + Setd2 KO,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,179948,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999935316946959,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9808289,,,train,sda-all,samples/GSE335211/GSM9808289,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9808290,GSE335211,GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,Kras (LSL-G12D) + H3K36M + Setd2 KO,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,485208,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999877057666425,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9808290,,,train,sda-all,samples/GSE335211/GSM9808290,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9808289,GSE335211,GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,Kras (LSL-G12D) + Setd2 KO,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,179948,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999353169469596,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9808289,,,train,sda-all,samples/GSE335211/GSM9808289,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9808290,GSE335211,GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008903,lung cancer,disease,luna,,Kras (LSL-G12D) + H3K36M + Setd2 KO,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,485208,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998770576664253,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9808290,,,train,sda-all,samples/GSE335211/GSM9808290,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9809293,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,66,female,female,GSE335275:B189,B189,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,52234,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000034495446601,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809293,,,test,sda-all,samples/GSE335275/GSM9809293,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9809294,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,66,female,female,GSE335275:B189,B189,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,185662,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999957400194741,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809294,,,test,sda-all,samples/GSE335275/GSM9809294,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.97}",, +GSM9809294,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,66,female,female,GSE335275:B189,B189,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,185662,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999574001947417,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809294,,,test,sda-all,samples/GSE335275/GSM9809294,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.97}",, GSM9809295,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,71,male,Male,GSE335275:WU1220,WU1220,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,56669,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103528242504,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809295,,,test,sda-all,samples/GSE335275/GSM9809295,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9809296,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,71,male,Male,GSE335275:WU1220,WU1220,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,296613,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000015904319612,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809296,,,test,sda-all,samples/GSE335275/GSM9809296,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9809297,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,68,female,female,GSE335275:WU1221,WU1221,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20859,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999917314370762,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809297,,,test,sda-all,samples/GSE335275/GSM9809297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9809298,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,68,female,female,GSE335275:WU1221,WU1221,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,103688,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999887184115523,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809298,,,test,sda-all,samples/GSE335275/GSM9809298,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9809297,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,68,female,female,GSE335275:WU1221,WU1221,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20859,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999173143707626,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809297,,,test,sda-all,samples/GSE335275/GSM9809297,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, +GSM9809298,GSE335275,GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Brain tumor,tumour tissue,MONDO:0850335;MONDO:0021211,IDH-wildtype glioblastoma;brain neoplasm,disease,luna,Glioblastoma,,aged,age rule: bare number read as years,aged,68,female,female,GSE335275:WU1221,WU1221,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,103688,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998871841155235,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9809298,,,test,sda-all,samples/GSE335275/GSM9809298,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9812268,GSE335345,GSE335345,"10X Visium spatial transcriptomics of mouse thoracic spine intervertebral disc, IVD2 (area D1)",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,bone,luna,UBERON:0006073,thoracic region of vertebral column,Thoracic Spine,primary tissue,,,perturbation,luna,,Adgrg6-cKO and Wildtype,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1916,19465,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9812268,,,train,sda-all,samples/GSE335345/GSM9812268,sda-tissue-disease-2.3,"{""organ"": 0.79, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9815146,GSE335533,GSE335533,Epigenetic reprogramming of CD4⁺ T cell fate by maternal and early-life obesity impairs vaccine responses in the offspring [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0000029,lymph node,draining lymph node,primary tissue,,,perturbation,luna,,NP-OVA + Alum,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1152,19465,counts,um,1.0,verified,True,H&E-like (heuristic),4.687298315398718,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9815146,,,train,sda-all,samples/GSE335533/GSM9815146,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9815147,GSE335533,GSE335533,Epigenetic reprogramming of CD4⁺ T cell fate by maternal and early-life obesity impairs vaccine responses in the offspring [Spatial Transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lymph node,luna,UBERON:0000029,lymph node,draining lymph node,primary tissue,,,perturbation,luna,,NP-OVA + Alum,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2758,19465,counts,um,1.0,verified,True,H&E-like (heuristic),4.701480240620542,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9815147,,,train,sda-all,samples/GSE335533/GSM9815147,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.45, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -11784,21 +11784,21 @@ GSM9815455,GSE335552,GSE335552,An Integrated Spatial Multi-Omics Workflow for Se GSM9815456,GSE335552,GSE335552,An Integrated Spatial Multi-Omics Workflow for Sequential RNA and Protein Profiling in FFPE Tumor Tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,metastasis,MONDO:0005070,neoplasm,disease,luna,,CRLM tumor,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,213319,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999912459413001,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9815456,,,train,sda-all,samples/GSE335552/GSM9815456,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.87, ""life_stage"": 1.0}",, GSM9815457,GSE335552,GSE335552,An Integrated Spatial Multi-Omics Workflow for Sequential RNA and Protein Profiling in FFPE Tumor Tissue,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,Liver,primary tissue,,,normal,luna,,matched adjacent normal liver sample,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,186496,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9815457,,,train,sda-all,samples/GSE335552/GSM9815457,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9815713,GSE335564,GSE335564,A comparative brain cell atlas of Astyanax mexicanus,Astyanax mexicanus,7994,Mexican tetra,Astyanax mexicanus,7994,,False,False,GEO organism field,Astyanax mexicanus,,brain,luna,UBERON:0000955,brain,Whole brain,primary tissue,,,normal,luna,,Rio Choy surface,not stated,luna,not stated,,female,female,,,,,Other,release v3,not named in GEO,sequencing-based,other,,,other,784963,27540,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,42395481,,GSM9815713,,,train,sda-all,samples/GSE335564/GSM9815713,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9812615,GSE335592,GSE335592,CAR-T-drug conjugate against solid tumor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,CAR-T,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,10000,39763,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9812615,,,val,sda-all,samples/GSE335592/GSM9812615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9812616,GSE335592,GSE335592,CAR-T-drug conjugate against solid tumor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,CAR-T-D-C,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq (or DBiT-derived),sequencing-based,other,,,spot,10000,44148,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9812616,,,val,sda-all,samples/GSE335592/GSM9812616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9812615,GSE335592,GSE335592,CAR-T-drug conjugate against solid tumor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,CAR-T,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,10000,39763,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9812615,,,val,sda-all,samples/GSE335592/GSM9812615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9812616,GSE335592,GSE335592,CAR-T-drug conjugate against solid tumor,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,lung,luna,UBERON:0002048,lung,Lung,primary tissue,MONDO:0005070,neoplasm,disease,mondo_predicate (Luna: perturbation),,CAR-T-D-C,not stated,luna,not stated,,unknown,,,,,,DBiT-seq,GEO series text (assay_final.csv),DBiT-seq,sequencing-based,other,,,spot,10000,44148,unknown,native_grid,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9812616,,,val,sda-all,samples/GSE335592/GSM9812616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.8200000000000001, ""disease_status"": 0.68, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9816491,GSE335624,GSE335624,Initial OX40–OX40L Signaling Promotes a Skin-Resident Memory T-Cell Reservoir in Atopic Dermatitis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0004980;MONDO:0021739,atopic eczema;prurigo,disease,luna,,Pretreatment atopic dermatitis lesional skin specimen containing an erythematous lesion and a prurigo nodule,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45280,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000048294513743,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42638514,,GSM9816491,,,train,sda-all,samples/GSE335624/GSM9816491,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.51, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9817881,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,mondo_predicate,,"transgenic, TgNotch3^WT",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2373,19465,counts,um,1.0,verified,True,H&E-like (heuristic),16.366801504538284,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,42547848,,GSM9817881,,,train,sda-all,samples/GSE335702/GSM9817881,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.24, ""uberon"": 0.99, ""life_stage"": 0.99}",disease_status,low_confidence_annotation GSM9817882,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,luna,,"transgenic, TgNotch3^R169C",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2077,19465,counts,um,1.0,verified,True,H&E-like (heuristic),11.906500471350352,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42547848,,GSM9817882,,,train,sda-all,samples/GSE335702/GSM9817882,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9817883,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0001981,blood vessel,cerebral vessels,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,mondo_predicate (Luna: perturbation),,"transgenic, TgNotch3^WT",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,831,19465,counts,um,1.0,verified,True,other bright-field stain (heuristic),11.929727585747996,VERIFIED,ABSENT,ABSENT,,zero_count_observations,VERIFIED,PASS,,,42547848,,GSM9817883,,,train,sda-all,samples/GSE335702/GSM9817883,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 0.76, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9817883,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0001981,blood vessel,cerebral vessels,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,mondo_predicate (Luna: perturbation),,"transgenic, TgNotch3^WT",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,831,19465,counts,um,1.0,verified,True,other bright-field stain (heuristic),11.929727585747997,VERIFIED,ABSENT,ABSENT,,zero_count_observations,VERIFIED,PASS,,,42547848,,GSM9817883,,,train,sda-all,samples/GSE335702/GSM9817883,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 0.28, ""uberon"": 0.76, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9817884,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0001981,blood vessel,cerebral vessels,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,luna,,"transgenic, TgNotch3^R169C",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,632,19465,counts,um,1.0,verified,True,other bright-field stain (heuristic),11.931448950616248,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42547848,,GSM9817884,,,train,sda-all,samples/GSE335702/GSM9817884,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.56, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9817885,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,"transgenic, TgNotch3^WT",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,384475,19059,counts,um,1.0,verified,True,H&E-like (heuristic),0.8957524246479206,FAILED,ABSENT,ABSENT,image_partial_coverage,,VERIFIED,PASS,,,42547848,,GSM9817885,,,train,sda-all,samples/GSE335702/GSM9817885,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9817886,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,mondo_predicate (Luna: perturbation),,"transgenic, TgNotch3^WT (line Tg129/213)",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,217363,19059,counts,um,1.0,verified,True,H&E-like (heuristic),0.8961549734485088,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42547848,,GSM9817886,,,train,sda-all,samples/GSE335702/GSM9817886,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.33, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9817887,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,luna,,"transgenic, TgNotch3^R169C (line Tg88/148)",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,346469,19059,counts,um,1.0,verified,True,H&E-like (heuristic),1.1914155254906087,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42547848,,GSM9817887,,,train,sda-all,samples/GSE335702/GSM9817887,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9817888,GSE335702,GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,MONDO:0000914,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease,luna,,"transgenic, TgNotch3^R169C (line Tg88)",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,267238,19059,counts,um,1.0,verified,True,H&E-like (heuristic),1.0935744355932078,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,42547848,,GSM9817888,,,train,sda-all,samples/GSE335702/GSM9817888,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9820697,GSE335777,GSE335777,Resident tissue macrophages transfer selenium transporter protein to protect pancreatic cancer from ferroptosis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,PDAC,tumour tissue,MONDO:0005184,pancreatic ductal adenocarcinoma,disease,luna,,tamoxifen,not stated,luna,not stated,,unknown,,,,,,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3600,19465,counts,um,1.0,verified,True,H&E,4.242247094208409,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9820697,,,train,sda-all,samples/GSE335777/GSM9820697,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9822859,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002771,middle temporal gyrus,Middle Temporal Gyrus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,197723,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999918706397067,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822859,,,train,sda-all,samples/GSE335898/GSM9822859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9822859,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002771,middle temporal gyrus,Middle Temporal Gyrus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,197723,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999187063970674,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822859,,,train,sda-all,samples/GSE335898/GSM9822859,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9822860,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002771,middle temporal gyrus,Middle Temporal Gyrus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,188921,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000051805120649,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822860,,,train,sda-all,samples/GSE335898/GSM9822860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9822861,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002771,middle temporal gyrus,Middle Temporal Gyrus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,145605,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890628597743,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822861,,,train,sda-all,samples/GSE335898/GSM9822861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9822861,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002771,middle temporal gyrus,Middle Temporal Gyrus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,145605,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998906285977435,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822861,,,train,sda-all,samples/GSE335898/GSM9822861,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9822862,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002771,middle temporal gyrus,Middle Temporal Gyrus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,158042,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000054808535515,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822862,,,train,sda-all,samples/GSE335898/GSM9822862,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9822863,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,33445,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999922472606988,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822863,,,train,sda-all,samples/GSE335898/GSM9822863,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9822864,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,29499,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000120606478291,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822864,,,train,sda-all,samples/GSE335898/GSM9822864,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11810,7 +11810,7 @@ GSM9822869,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reve GSM9822870,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,30958,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822870,,,train,sda-all,samples/GSE335898/GSM9822870,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9822871,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12719,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000183486238532,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822871,,,train,sda-all,samples/GSE335898/GSM9822871,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.98, ""life_stage"": 0.99}",, GSM9822872,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,45812,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000007950642411,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822872,,,train,sda-all,samples/GSE335898/GSM9822872,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 0.99}",, -GSM9822873,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,110328,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896597363922,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822873,,,train,sda-all,samples/GSE335898/GSM9822873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9822873,GSE335898,GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002421,hippocampal formation,Hippocampus,primary tissue,,,normal,luna,,Control,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,110328,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998965973639226,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9822873,,,train,sda-all,samples/GSE335898/GSM9822873,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9824312,GSE335962,GSE335962,Clonal Hematopoiesis Drives Fibrotic Remodeling of the Bone Marrow Microenvironment [dataset 2],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow biopsy,primary tissue,MONDO:0100542,clonal hematopoiesis,disease,luna,,CHIP,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,61583,9692,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9824312,,,train,sda-all,samples/GSE335962/GSM9824312,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9824313,GSE335962,GSE335962,Clonal Hematopoiesis Drives Fibrotic Remodeling of the Bone Marrow Microenvironment [dataset 2],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow biopsy,primary tissue,MONDO:0100542,clonal hematopoiesis,disease,luna,,CHIP,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,40264,9692,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9824313,,,train,sda-all,samples/GSE335962/GSM9824313,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9824314,GSE335962,GSE335962,Clonal Hematopoiesis Drives Fibrotic Remodeling of the Bone Marrow Microenvironment [dataset 2],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow biopsy,primary tissue,,,disease,luna,,Non-CHIP,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23992,9692,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9824314,,,train,sda-all,samples/GSE335962/GSM9824314,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.25, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation @@ -11825,10 +11825,10 @@ GSM9829817,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal S GSM9829818,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,"Spinal cord (from thoracic, lumbar, and sacral parts)",primary tissue,,,perturbation,luna,,Cold,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mSpinal Cord_100g,xenium-3.2.0.7,cell,78138,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000028674986235,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9829818,,,train,sda-all,samples/GSE336196/GSM9829818,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.49, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9829819,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,"Spinal cord (from thoracic, lumbar, and sacral parts)",primary tissue,,,normal,luna,,RT/saline,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mSpinal Cord_100g,xenium-3.3.1.1,cell,598230,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000064836827317,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9829819,,,train,sda-all,samples/GSE336196/GSM9829819,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.68, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9829820,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,"Spinal cord (from thoracic, lumbar, and sacral parts)",primary tissue,,,perturbation,luna,,Cold,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mSpinal Cord_100g,xenium-3.3.1.1,cell,556964,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999913610643169,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9829820,,,train,sda-all,samples/GSE336196/GSM9829820,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.53, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation -GSM9829821,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,"Spinal cord (from thoracic, lumbar, and sacral parts)",primary tissue,,,perturbation,luna,,2-DG,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mSpinal Cord_100g,xenium-3.3.1.1,cell,591992,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999908223201174,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9829821,,,train,sda-all,samples/GSE336196/GSM9829821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9829821,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,"Spinal cord (from thoracic, lumbar, and sacral parts)",primary tissue,,,perturbation,luna,,2-DG,not stated,luna,not stated,,male,male,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mSpinal Cord_100g,xenium-3.3.1.1,cell,591992,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999082232011743,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9829821,,,train,sda-all,samples/GSE336196/GSM9829821,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9829822,GSE336196,GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,spinal cord,luna,UBERON:0002240,spinal cord,"Spinal cord (from thoracic, lumbar, and sacral parts)",primary tissue,,,perturbation,luna,,2-DG,not stated,luna,not stated,,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mSpinal Cord_100g,xenium-3.3.1.1,cell,618208,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000102676062427,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9829822,,,train,sda-all,samples/GSE336196/GSM9829822,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9830047,GSE336209,GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0018076,tuberculosis,disease,luna,,,not stated,luna,not stated,,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,398650,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999976998803938,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42427735,,GSM9830047,,,train,sda-all,samples/GSE336209/GSM9830047,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9830048,GSE336209,GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0018076,tuberculosis,disease,luna,,,not stated,luna,not stated,,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,361007,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499991374154667,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42427735,,GSM9830048,,,train,sda-all,samples/GSE336209/GSM9830048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.98}",, +GSM9830048,GSE336209,GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0018076,tuberculosis,disease,luna,,,not stated,luna,not stated,,male,male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,361007,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999137415466705,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42427735,,GSM9830048,,,train,sda-all,samples/GSE336209/GSM9830048,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.98}",, GSM9830049,GSE336209,GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0018076,tuberculosis,disease,luna,,,not stated,luna,not stated,,female,female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,312610,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890714154243,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42427735,,GSM9830049,,,train,sda-all,samples/GSE336209/GSM9830049,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9830050,GSE336209,GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,lung,primary tissue,MONDO:0018076,tuberculosis,disease,luna,,,not stated,luna,not stated,,female,female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,302232,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000012177301509,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42427735,,GSM9830050,,,train,sda-all,samples/GSE336209/GSM9830050,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9837325,GSE336556,GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,27886,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000222969264545,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9837325,,,train,sda-all,samples/GSE336556/GSM9837325,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -11839,7 +11839,7 @@ GSM9837329,GSE336556,GSE336556,Spatial transcriptomics reveals differences in br GSM9837330,GSE336556,GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,20345,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999931394072447,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9837330,,,train,sda-all,samples/GSE336556/GSM9837330,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9837331,GSE336556,GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60123,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999725010312113,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9837331,,,train,sda-all,samples/GSE336556/GSM9837331,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.93, ""disease_status"": 0.65, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9837332,GSE336556,GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37429,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000087434821315,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9837332,,,train,sda-all,samples/GSE336556/GSM9837332,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9837333,GSE336556,GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47611,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999804992199687,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9837333,,,train,sda-all,samples/GSE336556/GSM9837333,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9837333,GSE336556,GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,47611,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998049921996873,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9837333,,,train,sda-all,samples/GSE336556/GSM9837333,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9839078,GSE336633+GSE336978,GSE336633,Spatial Transcriptomics of MHC Expression in Mauritian Cynomolgus Macaque Tissues,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,,normal control,not stated,luna,not stated,,unknown,,GSE336633:cy0861,cy0861,FFPE,formalin-fixed paraffin-embedded,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,689749,18129,counts,um,1.0,verified,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM9839078,,,val,sda-all,samples/GSE336633/GSM9839078,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",,feature_species_differs GSM9839079,GSE336633+GSE336978,GSE336633,Spatial Transcriptomics of MHC Expression in Mauritian Cynomolgus Macaque Tissues,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,primary tissue,,,normal,luna,,normal control,not stated,luna,not stated,,unknown,,GSE336633:cy0861,cy0861,FFPE,formalin-fixed paraffin-embedded,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,489441,18129,counts,um,1.0,verified,False,,,,,,,zero_count_observations,VERIFIED,,,,,,GSM9839079,,,val,sda-all,samples/GSE336633/GSM9839079,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",,feature_species_differs GSM9839080,GSE336633+GSE336978,GSE336633,Spatial Transcriptomics of MHC Expression in Mauritian Cynomolgus Macaque Tissues,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,,normal control,not stated,luna,not stated,,unknown,,GSE336633:cy0861,cy0861,FFPE,formalin-fixed paraffin-embedded,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,655234,18129,counts,um,1.0,verified,False,,,,,,,,VERIFIED,,,,,,GSM9839080,,,val,sda-all,samples/GSE336633/GSM9839080,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.97}",,feature_species_differs @@ -11868,23 +11868,23 @@ GSM9844156,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironmen GSM9844157,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001085,interstitial nephritis,disease,luna,AIN,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,23409,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000110035211267,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844157,,,train,sda-all,samples/GSE336890/GSM9844157,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9844158,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0000958,medulla of organ,kidney,primary tissue,MONDO:0001085,interstitial nephritis,disease,luna,AIN,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,13860,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000235682300259,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844158,,,train,sda-all,samples/GSE336890/GSM9844158,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.87, ""life_stage"": 1.0}",, GSM9844159,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001166,nephritis,disease,luna,ATI,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,16807,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000219298245614,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844159,,,train,sda-all,samples/GSE336890/GSM9844159,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.88, ""life_stage"": 1.0}",, -GSM9844160,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001166,nephritis,disease,luna,ATI,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12177,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999906064477342,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844160,,,train,sda-all,samples/GSE336890/GSM9844160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, -GSM9844161,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001085,interstitial nephritis,disease,luna,AIN,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,21387,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999853458382179,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844161,,,train,sda-all,samples/GSE336890/GSM9844161,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.84, ""life_stage"": 1.0}",, +GSM9844160,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001166,nephritis,disease,luna,ATI,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,12177,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999060644773424,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844160,,,train,sda-all,samples/GSE336890/GSM9844160,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9844161,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001085,interstitial nephritis,disease,luna,AIN,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,21387,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998534583821796,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844161,,,train,sda-all,samples/GSE336890/GSM9844161,sda-tissue-disease-2.3,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM9844162,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0001851,cortex,kidney,primary tissue,MONDO:0001085,interstitial nephritis,disease,luna,"AIN, ATI",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,24221,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000034441587069,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844162,,,train,sda-all,samples/GSE336890/GSM9844162,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9844163,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,,,normal,luna,reference,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,26598,9644,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000038803807947,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9844163,,,train,sda-all,samples/GSE336890/GSM9844163,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 0.78, ""life_stage"": 1.0}",, GSM9844164,GSE336890,GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,kidney,primary tissue,MONDO:0001085,interstitial nephritis,disease,luna,"AIN, ATI, reference",,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,98714,9644,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9844164,,,train,sda-all,samples/GSE336890/GSM9844164,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.85, ""life_stage"": 1.0}",, GSM9848653,GSE337131,GSE337131,Spatial transcriptomics of early-grade Huntington’s disease and control Caudate,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,Caudate,primary tissue,MONDO:0007739,Huntington disease,disease,luna,PN,,adult,age rule: bare number read as years,adult,59.9,male,male,GSE337131:BG_14,BG_14,fresh frozen,Fresh-frozen,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,687015,39125,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9848653,,,val,sda-all,samples/GSE337131/GSM9848653,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.91, ""uberon"": 0.37, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9848654,GSE337131,GSE337131,Spatial transcriptomics of early-grade Huntington’s disease and control Caudate,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,brain,luna,UBERON:0000955,brain,Caudate,primary tissue,MONDO:0007739,Huntington disease,disease,luna,HD (grade 0/1),,adult,age rule: bare number read as years,adult,59,male,male,GSE337131:BG_13,BG_13,fresh frozen,Fresh-frozen,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,688126,37082,counts,unstated,,unresolved,False,,,,,,units_unstated,,VERIFIED,,,,,,GSM9848654,,,val,sda-all,samples/GSE337131/GSM9848654,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.28, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9852121,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60866,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000096000472616,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852121,,,train,sda-all,samples/GSE337270/GSM9852121,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9852122,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,92702,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999992618836728,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852122,,,train,sda-all,samples/GSE337270/GSM9852122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9852122,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,92702,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999926188367283,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852122,,,train,sda-all,samples/GSE337270/GSM9852122,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9852123,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,116070,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000124062637847,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852123,,,train,sda-all,samples/GSE337270/GSM9852123,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9852124,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,93056,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999980608129073,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852124,,,train,sda-all,samples/GSE337270/GSM9852124,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9852125,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67756,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999928426008397,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852125,,,train,sda-all,samples/GSE337270/GSM9852125,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9852125,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,67756,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999284260083976,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852125,,,train,sda-all,samples/GSE337270/GSM9852125,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9852126,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,115307,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000110809053838,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852126,,,train,sda-all,samples/GSE337270/GSM9852126,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9852127,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,108738,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999924121185365,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852127,,,train,sda-all,samples/GSE337270/GSM9852127,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9852128,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,102548,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000116423470972,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852128,,,train,sda-all,samples/GSE337270/GSM9852128,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9852129,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,87165,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000015904319612,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852129,,,train,sda-all,samples/GSE337270/GSM9852129,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9852130,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,100588,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896590439047,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852130,,,train,sda-all,samples/GSE337270/GSM9852130,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.97, ""life_stage"": 1.0}",, +GSM9852130,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,100588,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998965904390474,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852130,,,train,sda-all,samples/GSE337270/GSM9852130,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9852131,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,99780,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999931007837509,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852131,,,train,sda-all,samples/GSE337270/GSM9852131,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9852132,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,107932,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000027583163237,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852132,,,train,sda-all,samples/GSE337270/GSM9852132,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9852133,GSE337270,GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,adult,age rule: age with unit,adult,11-12 weeks,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,81569,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000135135135135,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9852133,,,train,sda-all,samples/GSE337270/GSM9852133,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -11907,7 +11907,7 @@ GSM9853389,GSE337336,GSE337336,Genomic and spatial transcriptomics identify fibr GSM9853390,GSE337336,GSE337336,Genomic and spatial transcriptomics identify fibroblast-associated microenvironment in early mycosis fungoides progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0009691,mycosis fungoides,disease,luna,mycosis fungoides,plaque,not stated,luna,not stated,,unknown,,GSE337336:14,14,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,11739,1000,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9853390,,,val,sda-all,samples/GSE337336/GSM9853390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.96, ""disease_status"": 1.0, ""uberon"": 0.87, ""life_stage"": 1.0}",, GSM9853391,GSE337336,GSE337336,Genomic and spatial transcriptomics identify fibroblast-associated microenvironment in early mycosis fungoides progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0009691,mycosis fungoides,disease,luna,mycosis fungoides,plaque,not stated,luna,not stated,,unknown,,GSE337336:15,15,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,4885,1000,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9853391,,,val,sda-all,samples/GSE337336/GSM9853391,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9853392,GSE337336,GSE337336,Genomic and spatial transcriptomics identify fibroblast-associated microenvironment in early mycosis fungoides progression,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,skin,luna,UBERON:0000014,zone of skin,skin,tumour tissue,MONDO:0009691,mycosis fungoides,disease,luna,mycosis fungoides,plaque,not stated,luna,not stated,,unknown,,GSE337336:16,16,FFPE,FFPE,CosMx,release v3,CosMx,imaging-based,CosMx,,,cell,6331,1000,counts,pixel,,unresolved,False,,,,,,,,VERIFIED,,,,,,GSM9853392,,,val,sda-all,samples/GSE337336/GSM9853392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9856933,GSE337521,GSE337521,"Efficacy, safety, and spatial transcriptomic rationale of orelabrutinib plus obinutuzumab in marginal zone lymphoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,thyroid,tumour tissue,MONDO:0006464,thyroid gland mucosa-associated lymphoid tissue lymphoma,disease,luna,,first-line orelabrutinib plus obinutuzumab cohort; pretreatment biopsy,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,50739,18085,counts,um,1.0,verified,True,H&E-like (heuristic),1.288469765565364,VERIFIED,ABSENT,ABSENT,image_partial_coverage,,VERIFIED,PASS,,,42436125,,GSM9856933,,,test,sda-all,samples/GSE337521/GSM9856933,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM9856933,GSE337521,GSE337521,"Efficacy, safety, and spatial transcriptomic rationale of orelabrutinib plus obinutuzumab in marginal zone lymphoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,thyroid,luna,UBERON:0002046,thyroid gland,thyroid,tumour tissue,MONDO:0006464,thyroid gland mucosa-associated lymphoid tissue lymphoma,disease,luna,,first-line orelabrutinib plus obinutuzumab cohort; pretreatment biopsy,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,50739,18085,counts,um,1.0,verified,True,H&E-like (heuristic),1.2884697655653639,VERIFIED,ABSENT,ABSENT,image_partial_coverage,,VERIFIED,PASS,,,42436125,,GSM9856933,,,test,sda-all,samples/GSE337521/GSM9856933,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9856934,GSE337521,GSE337521,"Efficacy, safety, and spatial transcriptomic rationale of orelabrutinib plus obinutuzumab in marginal zone lymphoma",Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:8480065,labial gland,labial gland,tumour tissue,MONDO:0007650,MALT lymphoma,disease,luna,,first-line orelabrutinib plus obinutuzumab cohort; pretreatment biopsy,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium HD,release v3,Visium HD,sequencing-based,Visium HD,,,bin,144957,18085,counts,um,1.0,verified,True,H&E-like (heuristic),0.673467259324481,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42436125,,GSM9856934,,,test,sda-all,samples/GSE337521/GSM9856934,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9857595,GSE337537,GSE337537,Persistent Lung Inflammation and Fibrosis After Mouse-Adapted Omicron BA.1 Infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Pulmonary tissue,primary tissue,,,normal,luna,,PBS Mock Infected,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2370,19465,counts,um,1.0,verified,True,H&E,7.000046564739912,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9857595,,,train,sda-all,samples/GSE337537/GSM9857595,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9857596,GSE337537,GSE337537,Persistent Lung Inflammation and Fibrosis After Mouse-Adapted Omicron BA.1 Infection,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,lung,luna,UBERON:0002048,lung,Pulmonary tissue,primary tissue,MONDO:0005550,infectious disease,disease,luna,,Omicron BA.1 MA Infected,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1817,19465,counts,um,1.0,verified,True,H&E,6.931628435795099,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9857596,,,train,sda-all,samples/GSE337537/GSM9857596,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, @@ -11945,10 +11945,10 @@ GSM9876369,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 GSM9876370,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0015762;MONDO:0006322,progressive familial intrahepatic cholestasis;non-neoplastic bile duct disorder,disease,luna,Progressive Familial Intrahepatic Cholestasis (PFIC),,not stated,luna,not stated,,female,female,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,636,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.9137173219599073,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,modality details missing,42520160,,GSM9876370,,,train,sda-all,samples/GSE338525/GSM9876370,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.9500000000000001, ""life_stage"": 1.0}",, GSM9876371,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154;MONDO:0007318;MONDO:0001751;MONDO:0006322,liver disorder;Alagille syndrome;cholestasis;non-neoplastic bile duct disorder,disease,luna,Alagille Syndrome,,not stated,luna,not stated,,male,male,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1712,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.874318318228861,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,modality details missing,42520160,,GSM9876371,,,train,sda-all,samples/GSE338525/GSM9876371,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9876372,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0005154;MONDO:0007318;MONDO:0001751;MONDO:0006322,liver disorder;Alagille syndrome;cholestasis;non-neoplastic bile duct disorder,disease,luna,Alagille Syndrome,,not stated,luna,not stated,,male,male,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1644,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.846862599088768,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,modality details missing,42520160,,GSM9876372,,,train,sda-all,samples/GSE338525/GSM9876372,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9876373,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Normal,,not stated,luna,not stated,,unknown,not collected,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1078,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.011668349212703,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,other,"registration is good, but the fluorescence should be stated; the image may look gridded",42520160,,GSM9876373,,,train,sda-all,samples/GSE338525/GSM9876373,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9876373,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Normal,,not stated,luna,not stated,,unknown,not collected,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1078,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,4.0116683492127025,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,other,"registration is good, but the fluorescence should be stated; the image may look gridded",42520160,,GSM9876373,,,train,sda-all,samples/GSE338525/GSM9876373,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9876374,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Normal,,not stated,luna,not stated,,unknown,not collected,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2201,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.9450504498534062,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,other,"registration is good, but the fluorescence should be stated; the image may look gridded",42520160,,GSM9876374,,,train,sda-all,samples/GSE338525/GSM9876374,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9876375,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Normal,,not stated,luna,not stated,,unknown,not collected,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1521,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.899380951767101,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,modality details missing,42520160,,GSM9876375,,,train,sda-all,samples/GSE338525/GSM9876375,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9876376,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Normal,,not stated,luna,not stated,,unknown,not collected,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1549,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.894497445125295,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,modality details missing,42520160,,GSM9876376,,,train,sda-all,samples/GSE338525/GSM9876376,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9876376,GSE338525,GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,Normal,,not stated,luna,not stated,,unknown,not collected,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1549,37481,counts,um,1.0,verified,True,fluorescence: immunofluorescence,3.8944974451252947,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,modality details missing,42520160,,GSM9876376,,,train,sda-all,samples/GSE338525/GSM9876376,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9879486,GSE338671,GSE338671,A Novel Heterozygous STAT5B Loss-of-Function Variant Associated with Interleukin-17A-Responsive Systemic Juvenile Idiopathic Arthritis-like Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,"Heterozygous STAT5B loss-of-function variant, c.415C>T (p.Gln139Ter)",not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,75549,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000097732603597,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9879486,,,train,sda-all,samples/GSE338671/GSM9879486,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 0.97, ""life_stage"": 0.99}",, GSM9879487,GSE338671,GSE338671,A Novel Heterozygous STAT5B Loss-of-Function Variant Associated with Interleukin-17A-Responsive Systemic Juvenile Idiopathic Arthritis-like Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37295,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999956440301433,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9879487,,,train,sda-all,samples/GSE338671/GSM9879487,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 0.99, ""life_stage"": 0.97}",, GSM9879488,GSE338671,GSE338671,A Novel Heterozygous STAT5B Loss-of-Function Variant Associated with Interleukin-17A-Responsive Systemic Juvenile Idiopathic Arthritis-like Disease,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0007616,layer of synovial tissue,synovium,primary tissue,MONDO:0011429,juvenile idiopathic arthritis,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,38514,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999983642311886,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9879488,,,train,sda-all,samples/GSE338671/GSM9879488,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 0.96, ""life_stage"": 0.99}",, @@ -11958,24 +11958,24 @@ GSM9895921,GSE339455,GSE339455,Integrated bulk and spatial transcriptomic analys GSM9895922,GSE339455,GSE339455,Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Formalin Fixed Paraffin embedded kidney tissue,primary tissue,MONDO:0024633,hypertensive nephropathy,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1125,37082,counts,um,1.0,verified,True,blue bright-field stain (heuristic),4.581459015002735,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9895922,,,val,sda-all,samples/GSE339455/GSM9895922,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9895923,GSE339455,GSE339455,Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,kidney,luna,UBERON:0002113,kidney,Formalin Fixed Paraffin embedded kidney tissue,primary tissue,MONDO:0024633,hypertensive nephropathy,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,904,37082,counts,um,1.0,verified,True,blue bright-field stain (heuristic),5.086483448802158,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9895923,,,val,sda-all,samples/GSE339455/GSM9895923,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9901430,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,190499,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000067567567568,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901430,,,train,sda-all,samples/GSE341169/GSM9901430,sda-tissue-disease-2.4,"{""organ"": 0.86, ""sample_kind"": 0.99, ""disease_status"": 0.61, ""uberon"": 0.93, ""life_stage"": 1.0}",, -GSM9901431,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,179565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999915654520916,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901431,,,train,sda-all,samples/GSE341169/GSM9901431,sda-tissue-disease-2.4,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.87, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9901431,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,179565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999156545209167,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901431,,,train,sda-all,samples/GSE341169/GSM9901431,sda-tissue-disease-2.4,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.5700000000000001, ""uberon"": 0.87, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9901432,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,129522,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000242483026187,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901432,,,train,sda-all,samples/GSE341169/GSM9901432,sda-tissue-disease-2.4,"{""organ"": 0.8300000000000001, ""sample_kind"": 0.96, ""disease_status"": 0.67, ""uberon"": 0.89, ""life_stage"": 1.0}",, -GSM9901433,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,162075,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982827311443,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901433,,,train,sda-all,samples/GSE341169/GSM9901433,sda-tissue-disease-2.4,"{""organ"": 0.72, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 0.92, ""life_stage"": 1.0}",, +GSM9901433,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,162075,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999828273114433,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901433,,,train,sda-all,samples/GSE341169/GSM9901433,sda-tissue-disease-2.4,"{""organ"": 0.72, ""sample_kind"": 0.99, ""disease_status"": 0.79, ""uberon"": 0.92, ""life_stage"": 1.0}",, GSM9901434,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,193664,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000448922585794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901434,,,train,sda-all,samples/GSE341169/GSM9901434,sda-tissue-disease-2.4,"{""organ"": 0.9, ""sample_kind"": 0.98, ""disease_status"": 0.77, ""uberon"": 0.92, ""life_stage"": 0.99}",, GSM9901435,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,171459,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000475761217948,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901435,,,train,sda-all,samples/GSE341169/GSM9901435,sda-tissue-disease-2.4,"{""organ"": 0.91, ""sample_kind"": 0.99, ""disease_status"": 0.84, ""uberon"": 0.89, ""life_stage"": 0.99}",, GSM9901436,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,125982,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000128047531244,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901436,,,train,sda-all,samples/GSE341169/GSM9901436,sda-tissue-disease-2.4,"{""organ"": 0.84, ""sample_kind"": 0.99, ""disease_status"": 0.77, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM9901437,GSE341169,GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,Leucoraja erinaceus,7782,little skate,Leucoraja erinaceus,7782,,False,False,GEO organism field,Leucoraja erinaceus,,other,luna,UBERON:0002100,trunk,embryonic trunk transverse section,primary tissue,,,normal,luna,,,embryonic,luna,embryonic,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,137905,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000355546525803,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9901437,,,train,sda-all,samples/GSE341169/GSM9901437,sda-tissue-disease-2.4,"{""organ"": 0.64, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.93, ""life_stage"": 1.0}",, GSM9902424,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2493,33538,counts,um,1.0,verified,True,other bright-field stain (heuristic),14.56573535399683,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902424,,,test,sda-all,samples/GSE341225/GSM9902424,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9902425,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3997,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.60881881492408,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902425,,,test,sda-all,samples/GSE341225/GSM9902425,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9902425,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3997,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.608818814924081,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902425,,,test,sda-all,samples/GSE341225/GSM9902425,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902426,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3049,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.627984496572244,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902426,,,test,sda-all,samples/GSE341225/GSM9902426,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902427,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4499,33538,counts,um,1.0,verified,True,other bright-field stain (heuristic),14.624076768297233,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902427,,,test,sda-all,samples/GSE341225/GSM9902427,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9902428,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3333,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.629647765192956,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902428,,,test,sda-all,samples/GSE341225/GSM9902428,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9902428,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3333,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.629647765192955,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902428,,,test,sda-all,samples/GSE341225/GSM9902428,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902429,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3140,33538,counts,um,1.0,verified,True,other bright-field stain (heuristic),14.604940572874993,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902429,,,test,sda-all,samples/GSE341225/GSM9902429,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902430,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3404,33538,counts,um,1.0,verified,True,H&E-like (heuristic),15.624300100084753,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902430,,,test,sda-all,samples/GSE341225/GSM9902430,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902431,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2632,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.621861455441636,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902431,,,test,sda-all,samples/GSE341225/GSM9902431,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902432,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1181,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.624479677966056,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902432,,,test,sda-all,samples/GSE341225/GSM9902432,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM9902433,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0019781,astrocytoma (excluding glioblastoma),disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3951,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.633790307315982,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902433,,,test,sda-all,samples/GSE341225/GSM9902433,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9902436,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0016695,oligodendroglioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,797,33538,counts,um,1.0,verified,True,blue bright-field stain (heuristic),15.675014769851272,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902436,,,test,sda-all,samples/GSE341225/GSM9902436,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9902436,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0016695,oligodendroglioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,797,33538,counts,um,1.0,verified,True,blue bright-field stain (heuristic),15.675014769851273,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902436,,,test,sda-all,samples/GSE341225/GSM9902436,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902438,GSE341225,GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0000955,brain,IDH mutant glioma,tumour tissue,MONDO:0016695,oligodendroglioma,disease,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2656,33538,counts,um,1.0,verified,True,H&E-like (heuristic),14.609733594738332,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9902438,,,test,sda-all,samples/GSE341225/GSM9902438,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9902814,GSE341250,GSE341250,Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0005348,keloid,disease,luna,,Normal Skin and Keloid,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,86647,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999903474903475,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9902814,,,train,sda-all,samples/GSE341250/GSM9902814,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.5, ""life_stage"": 0.99}",uberon,low_confidence_annotation GSM9902815,GSE341250,GSE341250,Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,Skin,primary tissue,MONDO:0005348,keloid,disease,luna,,Keloid,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,64091,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499996308328411,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9902815,,,train,sda-all,samples/GSE341250/GSM9902815,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.73, ""life_stage"": 1.0}",, @@ -11998,7 +11998,7 @@ GSM9913893,GSE341607,GSE341607,A Tissue Virus Microenvironment with Activated St GSM9913894,GSE341607,GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Macaca mulatta,colon,luna,UBERON:0001157,transverse colon,Transverse colon,primary tissue,MONDO:0005550,infectious disease,disease,luna,,"EAEA group (transient reservoir model): challenged intravaginally/intrarectally with a 2000 TCID50 dose of SIVmac239; suppressive ART initiated 4 days post-infection and maintained for 193 days (~6 months) before analytical treatment interruption (ATI); necropsied 4 days post-ATI, during the pre-viremic eclipse phase.",not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1268,35441,counts,um,1.0,verified,True,H&E,4.425745266881301,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42614350,,GSM9913894,,,train,sda-all,samples/GSE341607/GSM9913894,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.99, ""life_stage"": 0.92}",, GSM9913895,GSE341607,GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Macaca mulatta,colon,luna,UBERON:0001156,ascending colon,Ascending colon,primary tissue,MONDO:0005550,infectious disease,disease,luna,,"EAEA group (transient reservoir model): challenged intravaginally/intrarectally with a 2000 TCID50 dose of SIVmac239; suppressive ART initiated 4 days post-infection and maintained for 144 days (~4 months) before analytical treatment interruption (ATI); necropsied 5 days post-ATI, during the pre-viremic eclipse phase.",not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3021,35441,counts,um,1.0,verified,True,H&E,4.495590781248508,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42614350,,GSM9913895,,,train,sda-all,samples/GSE341607/GSM9913895,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",, GSM9913896,GSE341607,GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Macaca mulatta,colon,luna,UBERON:0001156,ascending colon,Ascending colon,primary tissue,MONDO:0005550,infectious disease,disease,luna,,"EAEA group (transient reservoir model): challenged intravaginally/intrarectally with a 2000 TCID50 dose of SIVmac239; suppressive ART initiated 4 days post-infection and maintained for 144 days (~4 months) before analytical treatment interruption (ATI); necropsied 5 days post-ATI, during the pre-viremic eclipse phase.",not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,1924,21761,counts,um,1.0,verified,True,H&E,4.495954929160284,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42614350,,GSM9913896,,,train,sda-all,samples/GSE341607/GSM9913896,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 0.99, ""life_stage"": 0.92}",, -GSM9913897,GSE341607,GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Macaca mulatta,colon,luna,UBERON:0001156,ascending colon,Ascending colon,primary tissue,,,disease,luna,,"LAEA group (persistent reservoir model): challenged intravenously with a 300 TCID50 dose of barcoded SIVmac239M2; suppressive ART initiated at week 10 post-challenge and maintained for 382 days (~12 months) before analytical treatment interruption (ATI); necropsied 6 days post-ATI, during the pre-viremic eclipse phase.",not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2988,35441,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.324262397804215,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42614350,,GSM9913897,,,train,sda-all,samples/GSE341607/GSM9913897,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 0.93}",, +GSM9913897,GSE341607,GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],Macaca mulatta,9544,Rhesus monkey,Macaca mulatta,9544,,False,False,GEO organism field,Macaca mulatta,Macaca mulatta,colon,luna,UBERON:0001156,ascending colon,Ascending colon,primary tissue,,,disease,luna,,"LAEA group (persistent reservoir model): challenged intravenously with a 300 TCID50 dose of barcoded SIVmac239M2; suppressive ART initiated at week 10 post-challenge and maintained for 382 days (~12 months) before analytical treatment interruption (ATI); necropsied 6 days post-ATI, during the pre-viremic eclipse phase.",not stated,luna,not stated,,unknown,,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2988,35441,counts,um,1.0,verified,True,fluorescence: multichannel (heuristic),4.3242623978042145,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,42614350,,GSM9913897,,,train,sda-all,samples/GSE341607/GSM9913897,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 1.0, ""life_stage"": 0.93}",, GSM9919094,GSE341914,GSE341914,Spatial transcriptomic atlas of intestinal segments from KM mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,colon,luna,UBERON:0001153,caecum,cecum,primary tissue,,,normal,luna,,germ-free,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,1143,11865,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,PASS,,,,,GSM9919094,,,test,sda-all,samples/GSE341914/GSM9919094,sda-tissue-disease-2.3,"{""organ"": 0.92, ""sample_kind"": 0.99, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9919095,GSE341914,GSE341914,Spatial transcriptomic atlas of intestinal segments from KM mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,colon,luna,UBERON:0001155,colon,colon,primary tissue,,,normal,luna,,germ-free,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,23254,20436,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,PASS,,,,,GSM9919095,,,test,sda-all,samples/GSE341914/GSM9919095,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9919096,GSE341914,GSE341914,Spatial transcriptomic atlas of intestinal segments from KM mice,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,,small intestine,luna,UBERON:0002116,ileum,ileum,primary tissue,,,normal,luna,,germ-free,not stated,luna,not stated,,unknown,,,,fresh frozen,OCT-embedded,Stereo-seq,release v3,Stereo-seq,sequencing-based,Stereo-seq,,,cell,4830,16919,counts,native_grid,,unresolved,False,,,,,,,,VERIFIED,PASS,,,,,GSM9919096,,,test,sda-all,samples/GSE341914/GSM9919096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -12012,22 +12012,22 @@ GSM9920044,GSE341918,GSE341918,Dual host-pathogen screening of the lung during s GSM9921338,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,59145,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999811437191443,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921338,,,train,sda-all,samples/GSE341984/GSM9921338,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921339,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,386542,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000079083122445,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921339,,,train,sda-all,samples/GSE341984/GSM9921339,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921340,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,111028,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000264799340943,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921340,,,train,sda-all,samples/GSE341984/GSM9921340,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9921341,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68589,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999808553251649,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921341,,,train,sda-all,samples/GSE341984/GSM9921341,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9921341,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,68589,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998085532516495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921341,,,train,sda-all,samples/GSE341984/GSM9921341,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.96, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921342,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,454031,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000110586847537,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921342,,,train,sda-all,samples/GSE341984/GSM9921342,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921343,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,mondo_predicate (Luna: perturbation),,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,203952,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000113430127042,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921343,,,train,sda-all,samples/GSE341984/GSM9921343,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9921344,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,mondo_predicate (Luna: perturbation),,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55579,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999885426214481,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921344,,,train,sda-all,samples/GSE341984/GSM9921344,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9921344,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,mondo_predicate (Luna: perturbation),,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,55579,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998854262144815,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921344,,,train,sda-all,samples/GSE341984/GSM9921344,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.67, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921345,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,mondo_predicate (Luna: perturbation),,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,185750,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000167198271427,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921345,,,train,sda-all,samples/GSE341984/GSM9921345,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.36, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9921346,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,139603,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500009387908374,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921346,,,train,sda-all,samples/GSE341984/GSM9921346,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921347,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,271489,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000082665123584,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921347,,,train,sda-all,samples/GSE341984/GSM9921347,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9921348,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,99937,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999760306807286,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921348,,,train,sda-all,samples/GSE341984/GSM9921348,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9921348,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,99937,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49997603068072866,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921348,,,train,sda-all,samples/GSE341984/GSM9921348,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.6000000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9921349,GSE341984,GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,pancreas,luna,UBERON:0001264,pancreas,Pancreas,tumour tissue,MONDO:0009831,malignant pancreatic neoplasm,disease,luna,,Not applicable,not stated,luna,not stated,,unknown,,,,FFPE,"Formalin fixed, paraffin embedded",Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,182576,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999941259398496,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9921349,,,train,sda-all,samples/GSE341984/GSM9921349,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.98, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9924903,GSE342202,GSE342202,nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,male,Male,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,54424,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9924903,,,train,sda-all,samples/GSE342202/GSM9924903,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9924904,GSE342202,GSE342202,nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,56933,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9924904,,,train,sda-all,samples/GSE342202/GSM9924904,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.63, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9924905,GSE342202,GSE342202,nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60698,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9924905,,,train,sda-all,samples/GSE342202/GSM9924905,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9924906,GSE342202,GSE342202,nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,,not stated,luna,not stated,,female,Female,,,,,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,58841,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM9924906,,,train,sda-all,samples/GSE342202/GSM9924906,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9927390,GSE342289,GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,287576,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000059601213698,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927390,,,train,sda-all,samples/GSE342289/GSM9927390,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8300000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9927391,GSE342289,GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,252807,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989165763813,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927391,,,train,sda-all,samples/GSE342289/GSM9927391,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9927392,GSE342289,GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,287565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999978337160434,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927392,,,train,sda-all,samples/GSE342289/GSM9927392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9927391,GSE342289,GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,252807,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999891657638135,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927391,,,train,sda-all,samples/GSE342289/GSM9927391,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9927392,GSE342289,GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,287565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999783371604345,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927392,,,train,sda-all,samples/GSE342289/GSM9927392,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9927393,GSE342289,GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,205914,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000021685388385,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9927393,,,train,sda-all,samples/GSE342289/GSM9927393,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6900000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9928801,GSE342343,GSE342343,The role of Angiopoietin 1 in acute-on-chronic liver failure,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,MONDO:0100193,chronic liver failure,disease,luna,,western diet with alcohol/control and CLP/sham surgeries and AAV-TBG-Angpt1/AAV-control,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,283108,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000016322089228,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9928801,,,train,sda-all,samples/GSE342343/GSM9928801,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9936248,GSE342671,GSE342671,"Longitudinal single-cell and spatial transcriptomics reveals intratumor heterogeneity, therapeutic response, and comparative value of canine marginal zone lymphoma [spatial data]",Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,Canis lupus familiaris,unknown,luna,,,Marginal zone lymphoma,tumour tissue,MONDO:0017604,marginal zone lymphoma,disease,luna,Tumor,VSV,adult,luna,adult,,male,Male,,,fresh frozen,fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4609,20257,counts,um,1.0,verified,True,H&E-like (heuristic),3.9441824532788288,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9936248,,,val,sda-all,samples/GSE342671/GSM9936248,sda-tissue-disease-2.5,"{""organ"": 0.91, ""sample_kind"": 0.98, ""disease_status"": 0.99, ""uberon"": 0.58, ""life_stage"": 0.99}",uberon,low_confidence_annotation @@ -12052,17 +12052,17 @@ GSM9937022,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the c GSM9937023,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4464,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.888568303707904,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937023,,,train,sda-all,samples/GSE342709/GSM9937023,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937024,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4313,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.902477962557148,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937024,,,train,sda-all,samples/GSE342709/GSM9937024,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.79, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937025,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3852,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.89017040014719,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937025,,,train,sda-all,samples/GSE342709/GSM9937025,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.87, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9937026,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4143,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.342081269557903,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937026,,,train,sda-all,samples/GSE342709/GSM9937026,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9937026,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4143,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.3420812695579025,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937026,,,train,sda-all,samples/GSE342709/GSM9937026,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937027,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4700,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.343632208723565,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937027,,,train,sda-all,samples/GSE342709/GSM9937027,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937028,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4636,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.350037124207183,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937028,,,train,sda-all,samples/GSE342709/GSM9937028,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.64, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9937029,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3977,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.342366846541983,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937029,,,train,sda-all,samples/GSE342709/GSM9937029,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9937029,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3977,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.3423668465419825,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937029,,,train,sda-all,samples/GSE342709/GSM9937029,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.88, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937030,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4992,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.861150803556135,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937030,,,train,sda-all,samples/GSE342709/GSM9937030,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937031,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4681,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.854893631809902,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937031,,,train,sda-all,samples/GSE342709/GSM9937031,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9937032,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4723,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.864273425018951,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937032,,,train,sda-all,samples/GSE342709/GSM9937032,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9937032,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4723,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.8642734250189505,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937032,,,train,sda-all,samples/GSE342709/GSM9937032,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.84, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9937033,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4918,36601,counts,um,1.0,verified,True,H&E-like (heuristic),6.264850540639475,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937033,,,train,sda-all,samples/GSE342709/GSM9937033,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937034,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4972,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.020381272009828,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937034,,,train,sda-all,samples/GSE342709/GSM9937034,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937035,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3735,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.02242598228811,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937035,,,train,sda-all,samples/GSE342709/GSM9937035,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9937036,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4834,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.018610483292783,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937036,,,train,sda-all,samples/GSE342709/GSM9937036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM9937036,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4834,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.0186104832927825,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937036,,,train,sda-all,samples/GSE342709/GSM9937036,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9937037,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4940,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.033468401033628,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937037,,,train,sda-all,samples/GSE342709/GSM9937037,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.73, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937038,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4587,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.484176368200269,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937038,,,train,sda-all,samples/GSE342709/GSM9937038,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9937039,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4793,36601,counts,um,1.0,verified,True,H&E-like (heuristic),5.482300079850335,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937039,,,train,sda-all,samples/GSE342709/GSM9937039,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.85, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -12086,7 +12086,7 @@ GSM9937056,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the c GSM9937057,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4981,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.381752293776277,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937057,,,train,sda-all,samples/GSE342709/GSM9937057,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM9937058,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4726,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.554718379978793,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937058,,,train,sda-all,samples/GSE342709/GSM9937058,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.81, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937059,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4525,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.374097115925372,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937059,,,train,sda-all,samples/GSE342709/GSM9937059,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.92, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9937060,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4878,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.555660687872932,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937060,,,train,sda-all,samples/GSE342709/GSM9937060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9937060,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4878,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.5556606878729315,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937060,,,train,sda-all,samples/GSE342709/GSM9937060,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937061,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4590,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.371434433771441,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937061,,,train,sda-all,samples/GSE342709/GSM9937061,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.71, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937062,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4499,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.380775792996989,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937062,,,train,sda-all,samples/GSE342709/GSM9937062,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.65, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937063,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4593,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.376559707358991,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937063,,,train,sda-all,samples/GSE342709/GSM9937063,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.77, ""uberon"": 0.99, ""life_stage"": 0.99}",, @@ -12094,7 +12094,7 @@ GSM9937064,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the c GSM9937065,GSE342709,GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4098,36601,counts,um,1.0,verified,True,H&E-like (heuristic),4.3763038604834605,PARTIAL,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937065,,,train,sda-all,samples/GSE342709/GSM9937065,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.93, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9937425,GSE342738,GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002892,medial amygdaloid nucleus,Medial Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE342738:Br8325,Br8325,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,508108,37082,counts,um,1.0,verified,True,H&E-like (heuristic),4.317673913517749,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937425,,,train,sda-all,samples/GSE342738/GSM9937425,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.75, ""uberon"": 0.61, ""life_stage"": 1.0}",, GSM9937426,GSE342738,GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002883,central amygdaloid nucleus,Central Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE342738:Br8325,Br8325,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,690382,37082,counts,um,1.0,verified,True,H&E-like (heuristic),4.090316546839667,UNRESOLVED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937426,,,train,sda-all,samples/GSE342738/GSM9937426,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.91, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9937427,GSE342738,GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Intercalated Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE342738:Br9280,Br9280,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,556046,37082,counts,um,1.0,verified,True,H&E-like (heuristic),2.857036051184929,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937427,,,train,sda-all,samples/GSE342738/GSM9937427,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.88, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM9937427,GSE342738,GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0001876,amygdala,Intercalated Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE342738:Br9280,Br9280,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,556046,37082,counts,um,1.0,verified,True,H&E-like (heuristic),2.8570360511849295,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937427,,,train,sda-all,samples/GSE342738/GSM9937427,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 0.88, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9937428,GSE342738,GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002892,medial amygdaloid nucleus,Medial Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE342738:Br9280,Br9280,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,628882,37082,counts,um,1.0,verified,True,H&E-like (heuristic),3.271267932435241,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937428,,,train,sda-all,samples/GSE342738/GSM9937428,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.6000000000000001, ""uberon"": 0.5700000000000001, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM9937429,GSE342738,GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,brain,luna,UBERON:0002883,central amygdaloid nucleus,Central Amygdala,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,GSE342738:Br9280,Br9280,fresh frozen,Fresh frozen,Visium HD,release v3,Visium HD,sequencing-based,VisiumHD,,,bin,605187,37082,counts,um,1.0,verified,True,H&E-like (heuristic),2.4327384041757654,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9937429,,,train,sda-all,samples/GSE342738/GSM9937429,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.76, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9942072,GSE342913,GSE342913,"In situ targeted gene expression analysis of postnatal mouse cortex of LgDel model 22q11.2 deletion sydnrome, including treatment with antioxidant",Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,brain,primary tissue,,,normal,luna,,control,not stated,luna,not stated,,unknown,,,,fixed frozen,Fixed Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,162857,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9942072,,,train,sda-all,samples/GSE342913/GSM9942072,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.72, ""uberon"": 0.98, ""life_stage"": 0.99}",, @@ -12107,8 +12107,8 @@ GSM9945416,GSE343063,GSE343063,Spatially Resolved Cell-Cell Communication in Sma GSM9945417,GSE343063,GSE343063,Spatially Resolved Cell-Cell Communication in Small Cell Lung Cancer Reveals Macrophage-Driven Immune Evasion Programs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008433,small cell lung carcinoma,disease,luna,,None (treatment-naïve),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,283748,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000064486174165,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9945417,,,train,sda-all,samples/GSE343063/GSM9945417,sda-tissue-disease-2.3,"{""organ"": 0.96, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9945418,GSE343063,GSE343063,Spatially Resolved Cell-Cell Communication in Small Cell Lung Cancer Reveals Macrophage-Driven Immune Evasion Programs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008433,small cell lung carcinoma,disease,luna,,None (treatment-naïve),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,460746,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999912459413001,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9945418,,,train,sda-all,samples/GSE343063/GSM9945418,sda-tissue-disease-2.3,"{""organ"": 0.98, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9945419,GSE343063,GSE343063,Spatially Resolved Cell-Cell Communication in Small Cell Lung Cancer Reveals Macrophage-Driven Immune Evasion Programs,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lung,luna,UBERON:0002048,lung,lung,tumour tissue,MONDO:0008433,small cell lung carcinoma,disease,luna,,None (treatment-naïve),not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,396008,10029,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000077611631396,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9945419,,,train,sda-all,samples/GSE343063/GSM9945419,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9949642,GSE343350,GSE343350,Multi-tissue gene expression in HNSCC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,larynx; hypopharynx,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,354757,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999978224893301,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9949642,,,train,sda-all,samples/GSE343350/GSM9949642,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.33, ""disease_status"": 0.85, ""uberon"": 0.24, ""life_stage"": 1.0}",sample_kind;uberon,low_confidence_annotation -GSM9949643,GSE343350,GSE343350,Multi-tissue gene expression in HNSCC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,larynx; hypopharynx,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77787,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896451746513,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9949643,,,train,sda-all,samples/GSE343350/GSM9949643,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.42, ""disease_status"": 0.45, ""uberon"": 0.23, ""life_stage"": 1.0}",sample_kind;disease_status;uberon,low_confidence_annotation +GSM9949642,GSE343350,GSE343350,Multi-tissue gene expression in HNSCC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,larynx; hypopharynx,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,354757,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999782248933017,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9949642,,,train,sda-all,samples/GSE343350/GSM9949642,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 0.33, ""disease_status"": 0.85, ""uberon"": 0.24, ""life_stage"": 1.0}",sample_kind;uberon,low_confidence_annotation +GSM9949643,GSE343350,GSE343350,Multi-tissue gene expression in HNSCC,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,head and neck,luna,,,larynx; hypopharynx,tumour tissue,MONDO:0010150,head and neck squamous cell carcinoma,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,77787,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998964517465133,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9949643,,,train,sda-all,samples/GSE343350/GSM9949643,sda-tissue-disease-2.3,"{""organ"": 0.9500000000000001, ""sample_kind"": 0.42, ""disease_status"": 0.45, ""uberon"": 0.23, ""life_stage"": 1.0}",sample_kind;disease_status;uberon,low_confidence_annotation GSM9950644,GSE343400,GSE343400,Gelated Apoptotic Extracellular Vesicles via Enzyme-Instructed Self-Assembly with Multifunctional Microcapsule for Targeted Atherosclerosis Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0000947,aorta,Aorta,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo_seq,,,bin,169679,43696,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9950644,,,train,sda-all,samples/GSE343400/GSM9950644,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.15, ""uberon"": 0.99, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9950645,GSE343400,GSE343400,Gelated Apoptotic Extracellular Vesicles via Enzyme-Instructed Self-Assembly with Multifunctional Microcapsule for Targeted Atherosclerosis Therapy,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,blood vessel,luna,UBERON:0000947,aorta,Aorta,primary tissue,MONDO:0005311,atherosclerosis,disease,mondo_predicate (Luna: perturbation),,,not stated,luna,not stated,,unknown,,,,,,Stereo-seq,release v3,Stereo-seq,sequencing-based,stereo_seq,,,bin,171373,46505,counts,um,1.0,verified,False,,,,,,,,VERIFIED,PASS,,,,,GSM9950645,,,train,sda-all,samples/GSE343400/GSM9950645,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.78, ""disease_status"": 0.33, ""uberon"": 0.98, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM9963826,GSE343862,GSE343862,Zonated Cholesterol Sensing by SIRT2 Drives MASLD-HCC [Spatial transcriptomics],Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,liver,luna,UBERON:0002107,liver,liver,primary tissue,,,normal,luna,no MASLD,normal chow diet,adult,age rule: age with unit,adult,38 week old,male,male,,,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4019,31253,counts,um,1.0,verified,True,H&E-like (heuristic),4.338661793706116,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9963826,,,val,sda-all,samples/GSE343862/GSM9963826,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -12133,17 +12133,17 @@ GSM9980515,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact GSM9980516,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Neg,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2913,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.62280465771869,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980516,,,train,sda-all,samples/GSE344506/GSM9980516,sda-tissue-disease-2.3,"{""organ"": 0.6000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980517,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4319,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.618857489978507,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980517,,,train,sda-all,samples/GSE344506/GSM9980517,sda-tissue-disease-2.3,"{""organ"": 0.86, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980518,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Naive,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12388,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.621908726999012,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980518,,,train,sda-all,samples/GSE344506/GSM9980518,sda-tissue-disease-2.3,"{""organ"": 0.4, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation -GSM9980519,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11536,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.671149719375149,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980519,,,train,sda-all,samples/GSE344506/GSM9980519,sda-tissue-disease-2.3,"{""organ"": 0.63, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9980519,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,11536,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.6711497193751494,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980519,,,train,sda-all,samples/GSE344506/GSM9980519,sda-tissue-disease-2.3,"{""organ"": 0.63, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980520,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Naive,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,5117,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.620430767847997,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980520,,,train,sda-all,samples/GSE344506/GSM9980520,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980521,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7704,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.617738687570747,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980521,,,train,sda-all,samples/GSE344506/GSM9980521,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980522,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10497,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.621322313607839,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980522,,,train,sda-all,samples/GSE344506/GSM9980522,sda-tissue-disease-2.3,"{""organ"": 0.61, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980523,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Naive,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4575,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.672642104555541,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980523,,,train,sda-all,samples/GSE344506/GSM9980523,sda-tissue-disease-2.3,"{""organ"": 0.59, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9980524,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Naive,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7181,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.717060276952635,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980524,,,train,sda-all,samples/GSE344506/GSM9980524,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980525,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,7086,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.668040203843306,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980525,,,train,sda-all,samples/GSE344506/GSM9980525,sda-tissue-disease-2.3,"{""organ"": 0.73, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM9980526,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10770,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.64671691465368,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980526,,,train,sda-all,samples/GSE344506/GSM9980526,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9980526,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10770,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.6467169146536795,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980526,,,train,sda-all,samples/GSE344506/GSM9980526,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980527,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Neg,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,13594,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.718955174945757,FAILED,ABSENT,ABSENT,,,VERIFIED,PASS,registration correct (acceptance too strict),,,,GSM9980527,,,train,sda-all,samples/GSE344506/GSM9980527,sda-tissue-disease-2.3,"{""organ"": 0.6900000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980528,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Neg,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4394,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.648510005866487,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980528,,,train,sda-all,samples/GSE344506/GSM9980528,sda-tissue-disease-2.3,"{""organ"": 0.7000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, -GSM9980529,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Naive,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12451,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.718797719943344,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,looks somewhat odd,,,GSM9980529,,,train,sda-all,samples/GSE344506/GSM9980529,sda-tissue-disease-2.3,"{""organ"": 0.6000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, +GSM9980529,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Naive,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12451,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.7187977199433435,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,looks somewhat odd,,,GSM9980529,,,train,sda-all,samples/GSE344506/GSM9980529,sda-tissue-disease-2.3,"{""organ"": 0.6000000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980530,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Neg,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4171,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.6725934056196845,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980530,,,train,sda-all,samples/GSE344506/GSM9980530,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",, GSM9980531,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Pos_ART_Exp,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,9181,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.696788581112594,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980531,,,train,sda-all,samples/GSE344506/GSM9980531,sda-tissue-disease-2.3,"{""organ"": 0.46, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": NaN, ""life_stage"": 1.0}",organ,low_confidence_annotation GSM9980532,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,DLBCL Biopsy,tumour tissue,MONDO:0018905,diffuse large B-cell lymphoma,disease,luna,,HIV_Neg,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,10347,18085,counts,um,1.0,verified,True,H&E-like (heuristic),4.669781432396223,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9980532,,,train,sda-all,samples/GSE344506/GSM9980532,sda-tissue-disease-2.3,"{""organ"": 0.8, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": NaN, ""life_stage"": 1.0}",, @@ -12153,11 +12153,11 @@ GSM9980535,GSE344506,GSE344506,Spatial Transcriptomics to Investigate the Impact GSM9981854,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,adult,age rule: bare number read as years,adult,57,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,967159,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499998783987548,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981854,,,train,sda-all,samples/GSE344584/GSM9981854,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 0.89, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9981855,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,adult,age rule: bare number read as years,adult,54,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,727925,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000103589654119,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981855,,,train,sda-all,samples/GSE344584/GSM9981855,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.87, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9981856,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,adult,age rule: bare number read as years,adult,53,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,437136,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896387749761,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981856,,,train,sda-all,samples/GSE344584/GSM9981856,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 0.8300000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM9981857,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph node,metastasis,MONDO:0008170,ovarian cancer,disease,luna,,,adult,age rule: bare number read as years,adult,45,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1101585,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989125706828,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981857,,,train,sda-all,samples/GSE344584/GSM9981857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM9981857,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,lymph node,luna,UBERON:0000029,lymph node,Lymph node,metastasis,MONDO:0008170,ovarian cancer,disease,luna,,,adult,age rule: bare number read as years,adult,45,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1101585,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999891257068285,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981857,,,train,sda-all,samples/GSE344584/GSM9981857,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 0.92, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9981858,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,adult,age rule: bare number read as years,adult,59,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,703019,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000087070091424,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981858,,,train,sda-all,samples/GSE344584/GSM9981858,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.79, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM9981859,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0003889,fallopian tube,Fallopian tube,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,aged,age rule: bare number read as years,aged,77,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,716027,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999890633354396,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981859,,,train,sda-all,samples/GSE344584/GSM9981859,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.78, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM9981859,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,other,luna,UBERON:0003889,fallopian tube,Fallopian tube,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,aged,age rule: bare number read as years,aged,77,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,716027,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998906333543963,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981859,,,train,sda-all,samples/GSE344584/GSM9981859,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 0.78, ""disease_status"": 0.99, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM9981860,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,ovary,luna,UBERON:0000992,ovary,Ovary,tumour tissue,MONDO:0008170,ovarian cancer,disease,luna,,,aged,age rule: bare number read as years,aged,66,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,388133,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999929104314821,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981860,,,train,sda-all,samples/GSE344584/GSM9981860,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.6900000000000001, ""disease_status"": 0.97, ""uberon"": 0.92, ""life_stage"": 1.0}",, -GSM9981861,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,,unknown,MONDO:0008170,ovarian cancer,disease,luna,,,aged,age rule: bare number read as years,aged,68,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,724177,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999884383214876,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981861,,,train,sda-all,samples/GSE344584/GSM9981861,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 0.47000000000000003, ""disease_status"": 0.77, ""uberon"": NaN, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation +GSM9981861,GSE344584,GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,unknown,luna,,,,unknown,MONDO:0008170,ovarian cancer,disease,luna,,,aged,age rule: bare number read as years,aged,68,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,724177,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998843832148765,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM9981861,,,train,sda-all,samples/GSE344584/GSM9981861,sda-tissue-disease-2.3,"{""organ"": 0.77, ""sample_kind"": 0.47000000000000003, ""disease_status"": 0.77, ""uberon"": NaN, ""life_stage"": 1.0}",sample_kind,low_confidence_annotation GSM9982017,GSE344594,GSE344594,Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,Canis lupus familiaris,testis,luna,UBERON:0000473,testis,testis,primary tissue,MONDO:0002145;MONDO:0009047,disorder of sexual differentiation;cryptorchidism,disease,luna,,abdominally retained testis; unilateral cryptorchidism with disorder of sex development,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3929,27046,counts,um,1.0,verified,False,,,PARTIAL,ABSENT,ABSENT,,,VERIFIED,FAIL,image misaligned with cells / spots,not aligned at all,,,GSM9982017,,,val,sda-all,samples/GSE344594/GSM9982017,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.97, ""life_stage"": 1.0}",, GSM9982018,GSE344594,GSE344594,Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,Canis lupus familiaris,testis,luna,UBERON:0000473,testis,testis,primary tissue,MONDO:0003150,male reproductive system disorder,disease,luna,,contralateral descended testis from dog with abdominal cryptorchidism,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4731,27046,counts,um,1.0,verified,False,,,PARTIAL,ABSENT,ABSENT,,,VERIFIED,FAIL,image misaligned with cells / spots,not aligned at all,,,GSM9982018,,,val,sda-all,samples/GSE344594/GSM9982018,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.39, ""uberon"": 1.0, ""life_stage"": 0.9500000000000001}",disease_status,low_confidence_annotation GSM9982019,GSE344594,GSE344594,Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism,Canis lupus familiaris,9615,dog,Canis lupus familiaris,9615,,False,False,GEO organism field,Canis lupus familiaris,Canis lupus familiaris,testis,luna,UBERON:0000473,testis,testis,primary tissue,MONDO:0009047,cryptorchidism,disease,luna,,inguinally retained testis; isolated unilateral cryptorchidism,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,4136,27046,counts,um,1.0,verified,False,,,PARTIAL,ABSENT,ABSENT,,,VERIFIED,FAIL,image misaligned with cells / spots,not aligned at all,,,GSM9982019,,,val,sda-all,samples/GSE344594/GSM9982019,sda-tissue-disease-2.5,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.96, ""uberon"": 0.97, ""life_stage"": 0.98}",, @@ -12173,21 +12173,21 @@ GSM9984138,GSE344748,GSE344748,REM sleep readiness and duration are encoded duri GSM9989019,GSE344969,GSE344969,Spatial transcriptomic profiling of calcified human coronary artery lesions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,coronary artery,primary tissue,MONDO:0002123,calcinosis,disease,luna,,vascular calcification,aged,age rule: age in years,aged,85 years,male,male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3026,18085,counts,um,1.0,verified,True,H&E,5.778412705167272,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9989019,,,train,sda-all,samples/GSE344969/GSM9989019,sda-tissue-disease-2.3,"{""organ"": 0.97, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM9989020,GSE344969,GSE344969,Spatial transcriptomic profiling of calcified human coronary artery lesions,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,blood vessel,luna,UBERON:0001621,coronary artery,coronary artery,primary tissue,MONDO:0002123,calcinosis,disease,luna,,vascular calcification,aged,age rule: age in years,aged,85 years,male,male,,,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3112,18085,counts,um,1.0,verified,True,H&E,5.099333578007554,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM9989020,,,train,sda-all,samples/GSE344969/GSM9989020,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10000911,GSE345289,GSE345289,Gene expression mapping of eye after adipocyte depletion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,perturbation,luna,,7 weeks DT injection,juvenile,luna,juvenile,,unknown,,,,fresh frozen,Fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,37071,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999912364563416,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10000911,,,val,sda-all,samples/GSE345289/GSM10000911,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 0.66, ""life_stage"": 1.0}",, -GSM10000912,GSE345289,GSE345289,Gene expression mapping of eye after adipocyte depletion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,perturbation,luna,,7 weeks DT injection,juvenile,luna,juvenile,,unknown,,,,fresh frozen,Fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60468,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999984090619829,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10000912,,,val,sda-all,samples/GSE345289/GSM10000912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 0.98}",, +GSM10000912,GSE345289,GSE345289,Gene expression mapping of eye after adipocyte depletion,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,eye,luna,UBERON:0000970,eye,Eye,primary tissue,,,perturbation,luna,,7 weeks DT injection,juvenile,luna,juvenile,,unknown,,,,fresh frozen,Fresh frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,60468,13780,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999840906198295,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10000912,,,val,sda-all,samples/GSE345289/GSM10000912,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.65, ""life_stage"": 0.98}",, GSM10001168,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,NDMM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,701075,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000109670501073,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001168,,,train,sda-all,samples/GSE345302/GSM10001168,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM10001169,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,NDMM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,15152,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989093447343,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001169,,,train,sda-all,samples/GSE345302/GSM10001169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM10001170,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,CBM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,971259,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999989093447343,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001170,,,train,sda-all,samples/GSE345302/GSM10001170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, +GSM10001169,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,NDMM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,15152,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999890934473434,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001169,,,train,sda-all,samples/GSE345302/GSM10001169,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM10001170,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,CBM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,971259,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999890934473434,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001170,,,train,sda-all,samples/GSE345302/GSM10001170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 1.0, ""uberon"": 0.98, ""life_stage"": 1.0}",, GSM10001171,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,CBM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,135364,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000045278137129,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001171,,,train,sda-all,samples/GSE345302/GSM10001171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM10001172,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,NDMM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,781716,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000063285313204,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001172,,,train,sda-all,samples/GSE345302/GSM10001172,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM10001173,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,CBM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,435167,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000086345843886,VERIFIED,VERIFIED,VERIFIED,,zero_count_observations,VERIFIED,PASS,,,42678098,,GSM10001173,,,train,sda-all,samples/GSE345302/GSM10001173,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.91, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM10001174,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,SMM,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,721958,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499999455005232,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001174,,,train,sda-all,samples/GSE345302/GSM10001174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM10001175,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,RRMM,Triple class exposed,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,152039,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999982733216687,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001175,,,train,sda-all,samples/GSE345302/GSM10001175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM10001175,GSE345302,GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,bone marrow,luna,UBERON:0002371,bone marrow,Bone marrow,tumour tissue,MONDO:0009693;MONDO:1013329,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,luna,RRMM,Triple class exposed,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,152039,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999827332166874,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,42678098,,GSM10001175,,,train,sda-all,samples/GSE345302/GSM10001175,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM10002162,GSE345359,GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,wild type,adult,luna,adult,7 months,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mHamster_MPN_100g,xenium-3.2.0.7,cell,486207,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM10002162,,,train,sda-all,samples/GSE345359/GSM10002162,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM10002163,GSE345359,GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,wild type,adult,luna,adult,7 months,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mHamster_MPN_100g,xenium-3.2.0.7,cell,460753,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM10002163,,,train,sda-all,samples/GSE345359/GSM10002163,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 0.99}",, GSM10002164,GSE345359,GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,wild type,adult,luna,adult,7 months,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mHamster_MPN_100g,xenium-3.2.0.7,cell,498713,541,counts,um,1.0,verified,False,,,ABSENT,VERIFIED,VERIFIED,,,VERIFIED,,,,,,GSM10002164,,,train,sda-all,samples/GSE345359/GSM10002164,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.93, ""life_stage"": 0.98}",, GSM10002165,GSE345359,GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,Mesocricetus auratus,10036,golden hamster,Mesocricetus auratus,10036,,False,False,GEO organism field,Mesocricetus auratus,,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,wild type,adult,luna,adult,7 months,female,female,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,mHamster_MPN_100g,xenium-3.2.0.7,cell,510268,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000037796976241,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10002165,,,train,sda-all,samples/GSE345359/GSM10002165,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9500000000000001, ""life_stage"": 0.97}",, -GSM10012170,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,disease,luna,,NF; pRV,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,154475,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999902190923317,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012170,,,test,sda-all,samples/GSE345643/GSM10012170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation -GSM10012171,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,disease,luna,,pRV,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,190058,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999896451746513,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012171,,,test,sda-all,samples/GSE345643/GSM10012171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation +GSM10012170,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,disease,luna,,NF; pRV,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,154475,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999021909233177,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012170,,,test,sda-all,samples/GSE345643/GSM10012170,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.33, ""uberon"": 1.0, ""life_stage"": 0.99}",disease_status,low_confidence_annotation +GSM10012171,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,disease,luna,,pRV,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,190058,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998964517465133,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012171,,,test,sda-all,samples/GSE345643/GSM10012171,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.56, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM10012172,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,normal,luna,,NF,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,83406,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000025883936429,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012172,,,test,sda-all,samples/GSE345643/GSM10012172,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.31, ""uberon"": 1.0, ""life_stage"": 1.0}",disease_status,low_confidence_annotation GSM10012173,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,disease,luna,,RVF,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,31017,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000143266475644,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012173,,,test,sda-all,samples/GSE345643/GSM10012173,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10012174,GSE345643,GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,,heart,luna,UBERON:0002080,heart right ventricle,right ventricle (transmural),primary tissue,,,disease,luna,,RVF,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,97493,477,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000087199162888,VERIFIED,ABSENT,VERIFIED,,,VERIFIED,PASS,,,,,GSM10012174,,,test,sda-all,samples/GSE345643/GSM10012174,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.8, ""uberon"": 1.0, ""life_stage"": 1.0}",, @@ -12196,8 +12196,8 @@ GSM10012265,GSE345644,GSE345644,Human bladder cell spatial mapping [Xenium],Homo GSM10013104,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,246812,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999887471867967,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013104,,,train,sda-all,samples/GSE345691/GSM10013104,sda-tissue-disease-2.3,"{""organ"": 0.84, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.66, ""life_stage"": 1.0}",, GSM10013105,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,180115,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000135135135135,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013105,,,train,sda-all,samples/GSE345691/GSM10013105,sda-tissue-disease-2.3,"{""organ"": 0.91, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.72, ""life_stage"": 1.0}",, GSM10013106,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,114672,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999905061106124,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013106,,,train,sda-all,samples/GSE345691/GSM10013106,sda-tissue-disease-2.3,"{""organ"": 0.8300000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.9, ""life_stage"": 1.0}",, -GSM10013107,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,148575,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999897015745148,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013107,,,train,sda-all,samples/GSE345691/GSM10013107,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, -GSM10013108,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,152502,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999992611419788,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013108,,,train,sda-all,samples/GSE345691/GSM10013108,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.84, ""life_stage"": 1.0}",, +GSM10013107,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,148575,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998970157451483,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013107,,,train,sda-all,samples/GSE345691/GSM10013107,sda-tissue-disease-2.3,"{""organ"": 0.87, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.8200000000000001, ""life_stage"": 1.0}",, +GSM10013108,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569;MONDO:0007039,acoustic neuroma;NF2-related schwannomatosis,disease,luna,,NF2,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,152502,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999926114197885,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013108,,,train,sda-all,samples/GSE345691/GSM10013108,sda-tissue-disease-2.3,"{""organ"": 0.8200000000000001, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.84, ""life_stage"": 1.0}",, GSM10013109,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569,acoustic neuroma,disease,luna,,Sporadic,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,181878,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999840561224489,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013109,,,train,sda-all,samples/GSE345691/GSM10013109,sda-tissue-disease-2.3,"{""organ"": 0.89, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.86, ""life_stage"": 1.0}",, GSM10013110,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569,acoustic neuroma,disease,luna,,Sporadic,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,81967,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500019603796946,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013110,,,train,sda-all,samples/GSE345691/GSM10013110,sda-tissue-disease-2.3,"{""organ"": 0.93, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.86, ""life_stage"": 1.0}",, GSM10013111,GSE345691,GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,peripheral nerve,luna,UBERON:0001021,nerve,vestibular schwannoma,tumour tissue,MONDO:0001569,acoustic neuroma,disease,luna,,Sporadic,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,132739,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000056348610068,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10013111,,,train,sda-all,samples/GSE345691/GSM10013111,sda-tissue-disease-2.3,"{""organ"": 0.9400000000000001, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.76, ""life_stage"": 1.0}",, @@ -12205,7 +12205,7 @@ GSM10024480,GSE346090,GSE346090,Distinct IL‑17A and retinoic acid–associated GSM10024481,GSE346090,GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,HS lesional skin,primary tissue,MONDO:0006559,hidradenitis suppurativa,disease,luna,,,not stated,luna,not stated,,unknown,,GSE346090:HS2,HS2,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3293,62710,counts,um,1.0,verified,True,H&E-like (heuristic),4.723707128998128,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10024481,,,test,sda-all,samples/GSE346090/GSM10024481,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.54, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM10024482,GSE346090,GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,HS lesional skin,primary tissue,MONDO:0006559,hidradenitis suppurativa,disease,luna,,,not stated,luna,not stated,,unknown,,GSE346090:HS3,HS3,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,2434,62710,counts,um,1.0,verified,True,H&E-like (heuristic),4.557410862323747,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10024482,,,test,sda-all,samples/GSE346090/GSM10024482,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.58, ""life_stage"": 1.0}",uberon,low_confidence_annotation GSM10024483,GSE346090,GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,HS lesional skin,primary tissue,MONDO:0006559,hidradenitis suppurativa,disease,luna,,,not stated,luna,not stated,,unknown,,GSE346090:HS4,HS4,fresh frozen,Fresh frozen,Visium,release v3,Visium,sequencing-based,Visium,,,spot,3250,62710,counts,um,1.0,verified,True,H&E-like (heuristic),4.679794996243756,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10024483,,,test,sda-all,samples/GSE346090/GSM10024483,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.44, ""life_stage"": 1.0}",uberon,low_confidence_annotation -GSM10024484,GSE346090,GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,HS lesional skin,primary tissue,MONDO:0006559,hidradenitis suppurativa,disease,luna,,,not stated,luna,not stated,,unknown,,GSE346090:HS5,HS5,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12911,37082,counts,um,1.0,verified,True,H&E-like (heuristic),4.666428837731512,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10024484,,,test,sda-all,samples/GSE346090/GSM10024484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.63, ""life_stage"": 1.0}",, +GSM10024484,GSE346090,GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,skin,luna,UBERON:0000014,zone of skin,HS lesional skin,primary tissue,MONDO:0006559,hidradenitis suppurativa,disease,luna,,,not stated,luna,not stated,,unknown,,GSE346090:HS5,HS5,FFPE,FFPE,Visium,release v3,Visium,sequencing-based,Visium,,,spot,12911,37082,counts,um,1.0,verified,True,H&E-like (heuristic),4.6664288377315115,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10024484,,,test,sda-all,samples/GSE346090/GSM10024484,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.63, ""life_stage"": 1.0}",, GSM10039417,GSE346722,GSE346722,Spatial compartmentalization shapes distinct germinal center states during respiratory viral infection,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Homo sapiens,lymph node,luna,UBERON:0002524,mediastinal lymph node,mediastinal lymph node,primary tissue,MONDO:0100096,COVID-19,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,2155761,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500003810477725,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10039417,,,val,sda-all,samples/GSE346722/GSM10039417,sda-tissue-disease-2.4,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",,feature_species_differs GSM10039418,GSE346722,GSE346722,Spatial compartmentalization shapes distinct germinal center states during respiratory viral infection,Macaca fascicularis,9541,crab-eating macaque,Macaca fascicularis,9541,,False,False,GEO organism field,Macaca fascicularis,Homo sapiens,lymph node,luna,UBERON:0002524,mediastinal lymph node,mediastinal lymph node,primary tissue,MONDO:0100096,COVID-19,disease,luna,,,not stated,luna,not stated,,unknown,,,,FFPE,FFPE,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,1859898,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000074812393537,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10039418,,,val,sda-all,samples/GSE346722/GSM10039418,sda-tissue-disease-2.4,"{""organ"": 0.99, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.98}",,feature_species_differs GSM10058081,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,no treatment,aged,luna,aged,,male,male,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,3447,32285,counts,um,1.0,verified,True,H&E,4.384874889094179,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10058081,,,test,sda-all,samples/GSE347650/GSM10058081,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 0.99, ""life_stage"": 1.0}",, @@ -12223,21 +12223,21 @@ GSM10058092,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Rev GSM10058093,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,no treatment,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,3363,32285,counts,um,1.0,verified,True,H&E,4.043561701703319,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10058093,,,test,sda-all,samples/GSE347650/GSM10058093,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.74}",, GSM10058094,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,no treatment,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,3139,32285,counts,um,1.0,verified,True,H&E,4.037089512292712,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10058094,,,test,sda-all,samples/GSE347650/GSM10058094,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 0.72}",, GSM10058095,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,no treatment,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,2936,32285,counts,um,1.0,verified,True,H&E,4.039120213000088,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10058095,,,test,sda-all,samples/GSE347650/GSM10058095,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 0.99, ""life_stage"": 0.85}",, -GSM10058096,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,no treatment,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,2678,32285,counts,um,1.0,verified,True,H&E,4.044417977059696,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10058096,,,test,sda-all,samples/GSE347650/GSM10058096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.78}",, +GSM10058096,GSE347650,GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,normal,luna,,no treatment,not stated,luna,not stated,,female,female,,,fresh frozen,Fresh-frozen,Visium,release v3,Visium,sequencing-based,visium,,,spot,2678,32285,counts,um,1.0,verified,True,H&E,4.0444179770596955,VERIFIED,ABSENT,ABSENT,,,VERIFIED,PASS,,,,,GSM10058096,,,test,sda-all,samples/GSE347650/GSM10058096,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.78}",, GSM10073652,GSE348514,GSE348514,Xenium In Situ Spatial Perturb-Seq: Single-cell Functional Genomics of the Mouse Brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,Injected,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,171924,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000043094532165,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10073652,,,train,sda-all,samples/GSE348514/GSM10073652,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, -GSM10073653,GSE348514,GSE348514,Xenium In Situ Spatial Perturb-Seq: Single-cell Functional Genomics of the Mouse Brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,Injected,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,201587,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999936366528794,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10073653,,,train,sda-all,samples/GSE348514/GSM10073653,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, +GSM10073653,GSE348514,GSE348514,Xenium In Situ Spatial Perturb-Seq: Single-cell Functional Genomics of the Mouse Brain,Mus musculus,10090,house mouse,Mus musculus,10090,,False,False,GEO organism field,Mus musculus,Mus musculus,brain,luna,UBERON:0000955,brain,Brain,primary tissue,,,perturbation,luna,,Injected,not stated,luna,not stated,,unknown,,,,fresh frozen,Fresh Frozen,Xenium,release v3,Xenium,imaging-based,Xenium,,,cell,201587,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999363665287944,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10073653,,,train,sda-all,samples/GSE348514/GSM10073653,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.97, ""uberon"": 0.99, ""life_stage"": 1.0}",, GSM10075604,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,222249,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000128945739634,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075604,,,test,sda-all,samples/GSE348584/GSM10075604,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075605,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,57248,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000279050640348,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075605,,,test,sda-all,samples/GSE348584/GSM10075605,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.97, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM10075606,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,69849,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000092760554089,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075606,,,test,sda-all,samples/GSE348584/GSM10075606,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM10075607,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,127565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.499965921483097,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075607,,,test,sda-all,samples/GSE348584/GSM10075607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM10075608,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,33105,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999808553251649,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075608,,,test,sda-all,samples/GSE348584/GSM10075608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM10075609,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,73089,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999887328175467,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075609,,,test,sda-all,samples/GSE348584/GSM10075609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM10075607,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,127565,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49996592148309704,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075607,,,test,sda-all,samples/GSE348584/GSM10075607,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.9400000000000001, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM10075608,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,33105,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998085532516495,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075608,,,test,sda-all,samples/GSE348584/GSM10075608,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM10075609,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,73089,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49998873281754674,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075609,,,test,sda-all,samples/GSE348584/GSM10075609,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075610,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,95945,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.500011256190905,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075610,,,test,sda-all,samples/GSE348584/GSM10075610,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075611,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,58675,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000056420672534,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075611,,,test,sda-all,samples/GSE348584/GSM10075611,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075612,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,tumour tissue,MONDO:0005023,ductal breast carcinoma in situ,disease,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,144344,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075612,,,test,sda-all,samples/GSE348584/GSM10075612,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 1.0, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075613,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,66080,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999782847215872,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075613,,,test,sda-all,samples/GSE348584/GSM10075613,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM10075614,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,188199,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999925455296113,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075614,,,test,sda-all,samples/GSE348584/GSM10075614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM10075614,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,188199,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999254552961137,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075614,,,test,sda-all,samples/GSE348584/GSM10075614,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 0.99, ""disease_status"": 0.97, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075615,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,292034,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999905615046677,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075615,,,test,sda-all,samples/GSE348584/GSM10075615,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.89, ""uberon"": 1.0, ""life_stage"": 0.99}",, GSM10075616,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,213768,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.5000070821529745,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075616,,,test,sda-all,samples/GSE348584/GSM10075616,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, -GSM10075617,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,60690,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999972784672326,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075617,,,test,sda-all,samples/GSE348584/GSM10075617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, +GSM10075617,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,60690,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.49999727846723263,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075617,,,test,sda-all,samples/GSE348584/GSM10075617,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.9500000000000001, ""uberon"": 1.0, ""life_stage"": 1.0}",, GSM10075618,GSE348584,GSE348584,A single cell and spatial atlas of preinvasive breast cancer,Homo sapiens,9606,human,Homo sapiens,9606,,False,False,GEO organism field,Homo sapiens,Homo sapiens,breast,luna,UBERON:0000310,breast,breast,primary tissue,,,normal,luna,,,not stated,luna,not stated,,unknown,,,,,,Xenium,release v3,Xenium,imaging-based,xenium,,,cell,198205,541,counts,um,1.0,verified,True,fluorescence: DAPI,0.4999956440301433,VERIFIED,VERIFIED,VERIFIED,,,VERIFIED,PASS,,,,,GSM10075618,,,test,sda-all,samples/GSE348584/GSM10075618,sda-tissue-disease-2.3,"{""organ"": 1.0, ""sample_kind"": 1.0, ""disease_status"": 0.99, ""uberon"": 1.0, ""life_stage"": 0.99}",,