diff --git a/train/derivatives/synthseg/sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json b/train/derivatives/synthseg/sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..586e831eb644294b23352a8869ab3f8517245bd6 --- /dev/null +++ b/train/derivatives/synthseg/sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv b/train/derivatives/synthseg/sub-004/ses-vida/anat/sub-004_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv new file mode 100644 index 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0000000000000000000000000000000000000000..a7a978ab6d2ee86446fc0e3bb465a0bfbfab84ce --- /dev/null +++ b/train/derivatives/synthseg/sub-039/ses-vida/anat/sub-039_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-039/ses-vida/anat/sub-039_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-039/ses-vida/anat/sub-039_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-039/ses-vida/anat/sub-039_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv b/train/derivatives/synthseg/sub-039/ses-vida/anat/sub-039_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-039/ses-vida/anat/sub-039_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown 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ctx-lh-rostralanteriorcingulate +1027 ctx-lh-rostralmiddlefrontal +1028 ctx-lh-superiorfrontal +1029 ctx-lh-superiorparietal +1030 ctx-lh-superiortemporal +1031 ctx-lh-supramarginal +1032 ctx-lh-frontalpole +1033 ctx-lh-temporalpole +1034 ctx-lh-transversetemporal +1035 ctx-lh-insula +2000 ctx-rh-unknown +2001 ctx-rh-bankssts +2002 ctx-rh-caudalanteriorcingulate +2003 ctx-rh-caudalmiddlefrontal +2004 ctx-rh-corpuscallosum +2005 ctx-rh-cuneus +2006 ctx-rh-entorhinal +2007 ctx-rh-fusiform +2008 ctx-rh-inferiorparietal +2009 ctx-rh-inferiortemporal +2010 ctx-rh-isthmuscingulate +2011 ctx-rh-lateraloccipital +2012 ctx-rh-lateralorbitofrontal +2013 ctx-rh-lingual +2014 ctx-rh-medialorbitofrontal +2015 ctx-rh-middletemporal +2016 ctx-rh-parahippocampal +2017 ctx-rh-paracentral +2018 ctx-rh-parsopercularis +2019 ctx-rh-parsorbitalis +2020 ctx-rh-parstriangularis +2021 ctx-rh-pericalcarine +2022 ctx-rh-postcentral +2023 ctx-rh-posteriorcingulate +2024 ctx-rh-precentral +2025 ctx-rh-precuneus 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newline at end of file diff --git a/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv b/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown +1 Left-Cerebral-Exterior +2 Left-Cerebral-White-Matter +3 Left-Cerebral-Cortex +4 Left-Lateral-Ventricle +5 Left-Inf-Lat-Vent +6 Left-Cerebellum-Exterior +7 Left-Cerebellum-White-Matter +8 Left-Cerebellum-Cortex +9 Left-Thalamus +10 Left-Thalamus-Proper* +11 Left-Caudate +12 Left-Putamen +13 Left-Pallidum +14 3rd-Ventricle +15 4th-Ventricle +16 Brain-Stem +17 Left-Hippocampus +18 Left-Amygdala +19 Left-Insula +20 Left-Operculum +21 Line-1 +22 Line-2 +23 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b/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..b44b25cc2e3d7fe2f4cd9acd4c74d7002b4b89ce --- /dev/null +++ b/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv b/train/derivatives/synthseg/sub-044/ses-vida/anat/sub-044_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ 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Left-wm-intensity-abnormality +101 Left-caudate-intensity-abnormality +102 Left-putamen-intensity-abnormality +103 Left-accumbens-intensity-abnormality +104 Left-pallidum-intensity-abnormality +105 Left-amygdala-intensity-abnormality +106 Left-hippocampus-intensity-abnormality +107 Left-thalamus-intensity-abnormality +108 Left-VDC-intensity-abnormality +109 Right-wm-intensity-abnormality +110 Right-caudate-intensity-abnormality +111 Right-putamen-intensity-abnormality +112 Right-accumbens-intensity-abnormality +113 Right-pallidum-intensity-abnormality +114 Right-amygdala-intensity-abnormality +115 Right-hippocampus-intensity-abnormality +116 Right-thalamus-intensity-abnormality +117 Right-VDC-intensity-abnormality +118 Epidermis +119 Conn-Tissue +120 SC-Fat-Muscle +121 Cranium +122 CSF-SA +123 Muscle +124 Ear +125 Adipose +126 Spinal-Cord +127 Soft-Tissue +128 Nerve +129 Bone +130 Air +131 Orbital-Fat +132 Tongue +133 Nasal-Structures +134 Globe +135 Teeth +136 Left-Caudate-Putamen 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Corpus_Callosum +1000 ctx-lh-unknown +1001 ctx-lh-bankssts +1002 ctx-lh-caudalanteriorcingulate +1003 ctx-lh-caudalmiddlefrontal +1004 ctx-lh-corpuscallosum +1005 ctx-lh-cuneus +1006 ctx-lh-entorhinal +1007 ctx-lh-fusiform +1008 ctx-lh-inferiorparietal +1009 ctx-lh-inferiortemporal +1010 ctx-lh-isthmuscingulate +1011 ctx-lh-lateraloccipital +1012 ctx-lh-lateralorbitofrontal +1013 ctx-lh-lingual +1014 ctx-lh-medialorbitofrontal +1015 ctx-lh-middletemporal +1016 ctx-lh-parahippocampal +1017 ctx-lh-paracentral +1018 ctx-lh-parsopercularis +1019 ctx-lh-parsorbitalis +1020 ctx-lh-parstriangularis +1021 ctx-lh-pericalcarine +1022 ctx-lh-postcentral +1023 ctx-lh-posteriorcingulate +1024 ctx-lh-precentral +1025 ctx-lh-precuneus +1026 ctx-lh-rostralanteriorcingulate +1027 ctx-lh-rostralmiddlefrontal +1028 ctx-lh-superiorfrontal +1029 ctx-lh-superiorparietal +1030 ctx-lh-superiortemporal +1031 ctx-lh-supramarginal +1032 ctx-lh-frontalpole +1033 ctx-lh-temporalpole +1034 ctx-lh-transversetemporal 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ctx-rh-transversetemporal +2035 ctx-rh-insula diff --git a/train/derivatives/synthseg/sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json b/train/derivatives/synthseg/sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..39a3b5a560242c1f63189adf90b23c7bf3e1fd60 --- /dev/null +++ b/train/derivatives/synthseg/sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv b/train/derivatives/synthseg/sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-062/ses-vida/anat/sub-062_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown +1 Left-Cerebral-Exterior +2 Left-Cerebral-White-Matter +3 Left-Cerebral-Cortex +4 Left-Lateral-Ventricle +5 Left-Inf-Lat-Vent +6 Left-Cerebellum-Exterior +7 Left-Cerebellum-White-Matter +8 Left-Cerebellum-Cortex +9 Left-Thalamus +10 Left-Thalamus-Proper* +11 Left-Caudate +12 Left-Putamen +13 Left-Pallidum +14 3rd-Ventricle +15 4th-Ventricle +16 Brain-Stem +17 Left-Hippocampus +18 Left-Amygdala +19 Left-Insula +20 Left-Operculum +21 Line-1 +22 Line-2 +23 Line-3 +24 CSF +25 Left-Lesion +26 Left-Accumbens-area +27 Left-Substancia-Nigra +28 Left-VentralDC +29 Left-undetermined +30 Left-vessel +31 Left-choroid-plexus +32 Left-F3orb +33 Left-lOg +34 Left-aOg +35 Left-mOg +36 Left-pOg +37 Left-Stellate +38 Left-Porg +39 Left-Aorg +40 Right-Cerebral-Exterior +41 Right-Cerebral-White-Matter +42 Right-Cerebral-Cortex +43 Right-Lateral-Ventricle +44 Right-Inf-Lat-Vent +45 Right-Cerebellum-Exterior +46 Right-Cerebellum-White-Matter +47 Right-Cerebellum-Cortex +48 Right-Thalamus +49 Right-Thalamus-Proper* +50 Right-Caudate +51 Right-Putamen +52 Right-Pallidum +53 Right-Hippocampus +54 Right-Amygdala +55 Right-Insula +56 Right-Operculum +57 Right-Lesion +58 Right-Accumbens-area +59 Right-Substancia-Nigra +60 Right-VentralDC +61 Right-undetermined +62 Right-vessel +63 Right-choroid-plexus +64 Right-F3orb +65 Right-lOg +66 Right-aOg +67 Right-mOg +68 Right-pOg +69 Right-Stellate +70 Right-Porg +71 Right-Aorg +72 5th-Ventricle +73 Left-Interior +74 Right-Interior +77 WM-hypointensities +78 Left-WM-hypointensities +79 Right-WM-hypointensities +80 non-WM-hypointensities +81 Left-non-WM-hypointensities +82 Right-non-WM-hypointensities +83 Left-F1 +84 Right-F1 +85 Optic-Chiasm +86 Left_future_WMSA +87 Right_future_WMSA +88 future_WMSA +96 Left-Amygdala-Anterior +97 Right-Amygdala-Anterior +98 Dura +100 Left-wm-intensity-abnormality +101 Left-caudate-intensity-abnormality +102 Left-putamen-intensity-abnormality +103 Left-accumbens-intensity-abnormality +104 Left-pallidum-intensity-abnormality +105 Left-amygdala-intensity-abnormality +106 Left-hippocampus-intensity-abnormality +107 Left-thalamus-intensity-abnormality +108 Left-VDC-intensity-abnormality +109 Right-wm-intensity-abnormality +110 Right-caudate-intensity-abnormality +111 Right-putamen-intensity-abnormality +112 Right-accumbens-intensity-abnormality +113 Right-pallidum-intensity-abnormality +114 Right-amygdala-intensity-abnormality +115 Right-hippocampus-intensity-abnormality +116 Right-thalamus-intensity-abnormality +117 Right-VDC-intensity-abnormality +118 Epidermis +119 Conn-Tissue +120 SC-Fat-Muscle +121 Cranium +122 CSF-SA +123 Muscle +124 Ear +125 Adipose +126 Spinal-Cord +127 Soft-Tissue +128 Nerve +129 Bone +130 Air +131 Orbital-Fat +132 Tongue +133 Nasal-Structures +134 Globe +135 Teeth +136 Left-Caudate-Putamen +137 Right-Caudate-Putamen +138 Left-Claustrum +139 Right-Claustrum +140 Cornea +142 Diploe +143 Vitreous-Humor +144 Lens +145 Aqueous-Humor +146 Outer-Table +147 Inner-Table +148 Periosteum +149 Endosteum +150 R-C-S +151 Iris +152 SC-Adipose-Muscle +153 SC-Tissue +154 Orbital-Adipose +155 Left-IntCapsule-Ant +156 Right-IntCapsule-Ant +157 Left-IntCapsule-Pos +158 Right-IntCapsule-Pos +192 Corpus_Callosum +1000 ctx-lh-unknown +1001 ctx-lh-bankssts +1002 ctx-lh-caudalanteriorcingulate +1003 ctx-lh-caudalmiddlefrontal +1004 ctx-lh-corpuscallosum +1005 ctx-lh-cuneus +1006 ctx-lh-entorhinal +1007 ctx-lh-fusiform +1008 ctx-lh-inferiorparietal +1009 ctx-lh-inferiortemporal +1010 ctx-lh-isthmuscingulate +1011 ctx-lh-lateraloccipital +1012 ctx-lh-lateralorbitofrontal +1013 ctx-lh-lingual +1014 ctx-lh-medialorbitofrontal +1015 ctx-lh-middletemporal +1016 ctx-lh-parahippocampal +1017 ctx-lh-paracentral +1018 ctx-lh-parsopercularis +1019 ctx-lh-parsorbitalis +1020 ctx-lh-parstriangularis +1021 ctx-lh-pericalcarine +1022 ctx-lh-postcentral +1023 ctx-lh-posteriorcingulate +1024 ctx-lh-precentral +1025 ctx-lh-precuneus +1026 ctx-lh-rostralanteriorcingulate +1027 ctx-lh-rostralmiddlefrontal +1028 ctx-lh-superiorfrontal +1029 ctx-lh-superiorparietal +1030 ctx-lh-superiortemporal +1031 ctx-lh-supramarginal +1032 ctx-lh-frontalpole +1033 ctx-lh-temporalpole +1034 ctx-lh-transversetemporal +1035 ctx-lh-insula +2000 ctx-rh-unknown +2001 ctx-rh-bankssts +2002 ctx-rh-caudalanteriorcingulate +2003 ctx-rh-caudalmiddlefrontal +2004 ctx-rh-corpuscallosum +2005 ctx-rh-cuneus +2006 ctx-rh-entorhinal +2007 ctx-rh-fusiform +2008 ctx-rh-inferiorparietal +2009 ctx-rh-inferiortemporal +2010 ctx-rh-isthmuscingulate +2011 ctx-rh-lateraloccipital 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WM-hypointensities +78 Left-WM-hypointensities +79 Right-WM-hypointensities +80 non-WM-hypointensities +81 Left-non-WM-hypointensities +82 Right-non-WM-hypointensities +83 Left-F1 +84 Right-F1 +85 Optic-Chiasm +86 Left_future_WMSA +87 Right_future_WMSA +88 future_WMSA +96 Left-Amygdala-Anterior +97 Right-Amygdala-Anterior +98 Dura +100 Left-wm-intensity-abnormality +101 Left-caudate-intensity-abnormality +102 Left-putamen-intensity-abnormality +103 Left-accumbens-intensity-abnormality +104 Left-pallidum-intensity-abnormality +105 Left-amygdala-intensity-abnormality +106 Left-hippocampus-intensity-abnormality +107 Left-thalamus-intensity-abnormality +108 Left-VDC-intensity-abnormality +109 Right-wm-intensity-abnormality +110 Right-caudate-intensity-abnormality +111 Right-putamen-intensity-abnormality +112 Right-accumbens-intensity-abnormality +113 Right-pallidum-intensity-abnormality +114 Right-amygdala-intensity-abnormality +115 Right-hippocampus-intensity-abnormality +116 Right-thalamus-intensity-abnormality +117 Right-VDC-intensity-abnormality +118 Epidermis +119 Conn-Tissue +120 SC-Fat-Muscle +121 Cranium +122 CSF-SA +123 Muscle +124 Ear +125 Adipose +126 Spinal-Cord +127 Soft-Tissue +128 Nerve +129 Bone +130 Air +131 Orbital-Fat +132 Tongue +133 Nasal-Structures +134 Globe +135 Teeth +136 Left-Caudate-Putamen +137 Right-Caudate-Putamen +138 Left-Claustrum +139 Right-Claustrum +140 Cornea +142 Diploe +143 Vitreous-Humor +144 Lens +145 Aqueous-Humor +146 Outer-Table +147 Inner-Table +148 Periosteum +149 Endosteum +150 R-C-S +151 Iris +152 SC-Adipose-Muscle +153 SC-Tissue +154 Orbital-Adipose +155 Left-IntCapsule-Ant +156 Right-IntCapsule-Ant +157 Left-IntCapsule-Pos +158 Right-IntCapsule-Pos +192 Corpus_Callosum +1000 ctx-lh-unknown +1001 ctx-lh-bankssts +1002 ctx-lh-caudalanteriorcingulate +1003 ctx-lh-caudalmiddlefrontal +1004 ctx-lh-corpuscallosum +1005 ctx-lh-cuneus +1006 ctx-lh-entorhinal +1007 ctx-lh-fusiform +1008 ctx-lh-inferiorparietal +1009 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+2009 ctx-rh-inferiortemporal +2010 ctx-rh-isthmuscingulate +2011 ctx-rh-lateraloccipital +2012 ctx-rh-lateralorbitofrontal +2013 ctx-rh-lingual +2014 ctx-rh-medialorbitofrontal +2015 ctx-rh-middletemporal +2016 ctx-rh-parahippocampal +2017 ctx-rh-paracentral +2018 ctx-rh-parsopercularis +2019 ctx-rh-parsorbitalis +2020 ctx-rh-parstriangularis +2021 ctx-rh-pericalcarine +2022 ctx-rh-postcentral +2023 ctx-rh-posteriorcingulate +2024 ctx-rh-precentral +2025 ctx-rh-precuneus +2026 ctx-rh-rostralanteriorcingulate +2027 ctx-rh-rostralmiddlefrontal +2028 ctx-rh-superiorfrontal +2029 ctx-rh-superiorparietal +2030 ctx-rh-superiortemporal +2031 ctx-rh-supramarginal +2032 ctx-rh-frontalpole +2033 ctx-rh-temporalpole +2034 ctx-rh-transversetemporal +2035 ctx-rh-insula diff --git a/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json 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+2022 ctx-rh-postcentral +2023 ctx-rh-posteriorcingulate +2024 ctx-rh-precentral +2025 ctx-rh-precuneus +2026 ctx-rh-rostralanteriorcingulate +2027 ctx-rh-rostralmiddlefrontal +2028 ctx-rh-superiorfrontal +2029 ctx-rh-superiorparietal +2030 ctx-rh-superiortemporal +2031 ctx-rh-supramarginal +2032 ctx-rh-frontalpole +2033 ctx-rh-temporalpole +2034 ctx-rh-transversetemporal +2035 ctx-rh-insula diff --git a/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json b/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..a8cbc577afb08ea8092adedf7606448f93883127 --- /dev/null +++ b/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv b/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-078/ses-vida/anat/sub-078_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown +1 Left-Cerebral-Exterior +2 Left-Cerebral-White-Matter +3 Left-Cerebral-Cortex +4 Left-Lateral-Ventricle +5 Left-Inf-Lat-Vent +6 Left-Cerebellum-Exterior +7 Left-Cerebellum-White-Matter +8 Left-Cerebellum-Cortex +9 Left-Thalamus +10 Left-Thalamus-Proper* +11 Left-Caudate +12 Left-Putamen +13 Left-Pallidum +14 3rd-Ventricle +15 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a/train/derivatives/synthseg/sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json b/train/derivatives/synthseg/sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..a564c6985768d3529a41d013fa0c2b54b58ba312 --- /dev/null +++ b/train/derivatives/synthseg/sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv b/train/derivatives/synthseg/sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-080/ses-vida/anat/sub-080_ses-vida_task-rest_acq-MPRAGE_seg-synthseg_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown +1 Left-Cerebral-Exterior +2 Left-Cerebral-White-Matter +3 Left-Cerebral-Cortex +4 Left-Lateral-Ventricle +5 Left-Inf-Lat-Vent +6 Left-Cerebellum-Exterior +7 Left-Cerebellum-White-Matter +8 Left-Cerebellum-Cortex +9 Left-Thalamus +10 Left-Thalamus-Proper* +11 Left-Caudate +12 Left-Putamen +13 Left-Pallidum +14 3rd-Ventricle +15 4th-Ventricle +16 Brain-Stem +17 Left-Hippocampus +18 Left-Amygdala +19 Left-Insula +20 Left-Operculum +21 Line-1 +22 Line-2 +23 Line-3 +24 CSF +25 Left-Lesion +26 Left-Accumbens-area +27 Left-Substancia-Nigra +28 Left-VentralDC +29 Left-undetermined +30 Left-vessel +31 Left-choroid-plexus +32 Left-F3orb +33 Left-lOg +34 Left-aOg +35 Left-mOg +36 Left-pOg +37 Left-Stellate +38 Left-Porg +39 Left-Aorg +40 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ctx-rh-transversetemporal +2035 ctx-rh-insula diff --git a/train/derivatives/synthseg/sub-084/ses-vida/anat/sub-084_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json b/train/derivatives/synthseg/sub-084/ses-vida/anat/sub-084_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..2b869572989036c166a922917ab8cc8f68e8b965 --- /dev/null +++ b/train/derivatives/synthseg/sub-084/ses-vida/anat/sub-084_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-084/ses-vida/anat/sub-084_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-084/ses-vida/anat/sub-084_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-084/ses-vida/anat/sub-084_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv 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+2018 ctx-rh-parsopercularis +2019 ctx-rh-parsorbitalis +2020 ctx-rh-parstriangularis +2021 ctx-rh-pericalcarine +2022 ctx-rh-postcentral +2023 ctx-rh-posteriorcingulate +2024 ctx-rh-precentral +2025 ctx-rh-precuneus +2026 ctx-rh-rostralanteriorcingulate +2027 ctx-rh-rostralmiddlefrontal +2028 ctx-rh-superiorfrontal +2029 ctx-rh-superiorparietal +2030 ctx-rh-superiortemporal +2031 ctx-rh-supramarginal +2032 ctx-rh-frontalpole +2033 ctx-rh-temporalpole +2034 ctx-rh-transversetemporal +2035 ctx-rh-insula diff --git a/train/derivatives/synthseg/sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json b/train/derivatives/synthseg/sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..7883dfe84c22b461730cd680adf55ce571e7bc6d --- /dev/null +++ b/train/derivatives/synthseg/sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv b/train/derivatives/synthseg/sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-086/ses-vida/anat/sub-086_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown +1 Left-Cerebral-Exterior +2 Left-Cerebral-White-Matter +3 Left-Cerebral-Cortex +4 Left-Lateral-Ventricle +5 Left-Inf-Lat-Vent +6 Left-Cerebellum-Exterior +7 Left-Cerebellum-White-Matter +8 Left-Cerebellum-Cortex +9 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-0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-092/ses-vida/anat/sub-092_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-092/ses-vida/anat/sub-092_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-092/ses-vida/anat/sub-092_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv b/train/derivatives/synthseg/sub-092/ses-vida/anat/sub-092_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2aad03bc7f7f72404ac61ca7383fff3880f0b31b --- /dev/null +++ b/train/derivatives/synthseg/sub-092/ses-vida/anat/sub-092_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv @@ -0,0 +1,222 @@ +index name +0 Unknown +1 Left-Cerebral-Exterior +2 Left-Cerebral-White-Matter +3 Left-Cerebral-Cortex +4 Left-Lateral-Ventricle +5 Left-Inf-Lat-Vent +6 Left-Cerebellum-Exterior +7 Left-Cerebellum-White-Matter +8 Left-Cerebellum-Cortex +9 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ctx-rh-transversetemporal +2035 ctx-rh-insula diff --git a/train/derivatives/synthseg/sub-096/ses-vida/anat/sub-096_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json b/train/derivatives/synthseg/sub-096/ses-vida/anat/sub-096_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..e122b579c2b63f877fd109ae3f055c985c0f4a85 --- /dev/null +++ b/train/derivatives/synthseg/sub-096/ses-vida/anat/sub-096_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.json @@ -0,0 +1,6 @@ +{ + "Sources": [ + "bids:raw:sub-096/ses-vida/anat/sub-096_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-096/ses-vida/anat/sub-096_ses-vida_task-rest_acq-MPRAGE_T1w.nii.gz" +} \ No newline at end of file diff --git a/train/derivatives/synthseg/sub-096/ses-vida/anat/sub-096_ses-vida_task-rest_acq-MPRAGE_seg-synthsegparc_dseg.tsv 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Left-Hippocampus +18 Left-Amygdala +19 Left-Insula +20 Left-Operculum +21 Line-1 +22 Line-2 +23 Line-3 +24 CSF +25 Left-Lesion +26 Left-Accumbens-area +27 Left-Substancia-Nigra +28 Left-VentralDC +29 Left-undetermined +30 Left-vessel +31 Left-choroid-plexus +32 Left-F3orb +33 Left-lOg +34 Left-aOg +35 Left-mOg +36 Left-pOg +37 Left-Stellate +38 Left-Porg +39 Left-Aorg +40 Right-Cerebral-Exterior +41 Right-Cerebral-White-Matter +42 Right-Cerebral-Cortex +43 Right-Lateral-Ventricle +44 Right-Inf-Lat-Vent +45 Right-Cerebellum-Exterior +46 Right-Cerebellum-White-Matter +47 Right-Cerebellum-Cortex +48 Right-Thalamus +49 Right-Thalamus-Proper* +50 Right-Caudate +51 Right-Putamen +52 Right-Pallidum +53 Right-Hippocampus +54 Right-Amygdala +55 Right-Insula +56 Right-Operculum +57 Right-Lesion +58 Right-Accumbens-area +59 Right-Substancia-Nigra +60 Right-VentralDC +61 Right-undetermined +62 Right-vessel +63 Right-choroid-plexus +64 Right-F3orb +65 Right-lOg +66 Right-aOg +67 Right-mOg +68 Right-pOg +69 Right-Stellate +70 Right-Porg +71 Right-Aorg +72 5th-Ventricle +73 Left-Interior +74 Right-Interior +77 WM-hypointensities +78 Left-WM-hypointensities +79 Right-WM-hypointensities +80 non-WM-hypointensities +81 Left-non-WM-hypointensities +82 Right-non-WM-hypointensities +83 Left-F1 +84 Right-F1 +85 Optic-Chiasm +86 Left_future_WMSA +87 Right_future_WMSA +88 future_WMSA +96 Left-Amygdala-Anterior +97 Right-Amygdala-Anterior +98 Dura +100 Left-wm-intensity-abnormality +101 Left-caudate-intensity-abnormality +102 Left-putamen-intensity-abnormality +103 Left-accumbens-intensity-abnormality +104 Left-pallidum-intensity-abnormality +105 Left-amygdala-intensity-abnormality +106 Left-hippocampus-intensity-abnormality +107 Left-thalamus-intensity-abnormality +108 Left-VDC-intensity-abnormality +109 Right-wm-intensity-abnormality +110 Right-caudate-intensity-abnormality +111 Right-putamen-intensity-abnormality +112 Right-accumbens-intensity-abnormality +113 Right-pallidum-intensity-abnormality +114 Right-amygdala-intensity-abnormality +115 Right-hippocampus-intensity-abnormality +116 Right-thalamus-intensity-abnormality +117 Right-VDC-intensity-abnormality +118 Epidermis +119 Conn-Tissue +120 SC-Fat-Muscle +121 Cranium +122 CSF-SA +123 Muscle +124 Ear +125 Adipose +126 Spinal-Cord +127 Soft-Tissue +128 Nerve +129 Bone +130 Air +131 Orbital-Fat +132 Tongue +133 Nasal-Structures +134 Globe +135 Teeth +136 Left-Caudate-Putamen +137 Right-Caudate-Putamen +138 Left-Claustrum +139 Right-Claustrum +140 Cornea +142 Diploe +143 Vitreous-Humor +144 Lens +145 Aqueous-Humor +146 Outer-Table +147 Inner-Table +148 Periosteum +149 Endosteum +150 R-C-S +151 Iris +152 SC-Adipose-Muscle +153 SC-Tissue +154 Orbital-Adipose +155 Left-IntCapsule-Ant +156 Right-IntCapsule-Ant +157 Left-IntCapsule-Pos +158 Right-IntCapsule-Pos +192 Corpus_Callosum +1000 ctx-lh-unknown +1001 ctx-lh-bankssts +1002 ctx-lh-caudalanteriorcingulate +1003 ctx-lh-caudalmiddlefrontal +1004 ctx-lh-corpuscallosum +1005 ctx-lh-cuneus +1006 ctx-lh-entorhinal +1007 ctx-lh-fusiform +1008 ctx-lh-inferiorparietal +1009 ctx-lh-inferiortemporal +1010 ctx-lh-isthmuscingulate +1011 ctx-lh-lateraloccipital +1012 ctx-lh-lateralorbitofrontal +1013 ctx-lh-lingual +1014 ctx-lh-medialorbitofrontal +1015 ctx-lh-middletemporal +1016 ctx-lh-parahippocampal +1017 ctx-lh-paracentral +1018 ctx-lh-parsopercularis +1019 ctx-lh-parsorbitalis +1020 ctx-lh-parstriangularis +1021 ctx-lh-pericalcarine +1022 ctx-lh-postcentral +1023 ctx-lh-posteriorcingulate +1024 ctx-lh-precentral +1025 ctx-lh-precuneus +1026 ctx-lh-rostralanteriorcingulate +1027 ctx-lh-rostralmiddlefrontal +1028 ctx-lh-superiorfrontal +1029 ctx-lh-superiorparietal +1030 ctx-lh-superiortemporal +1031 ctx-lh-supramarginal +1032 ctx-lh-frontalpole +1033 ctx-lh-temporalpole +1034 ctx-lh-transversetemporal +1035 ctx-lh-insula +2000 ctx-rh-unknown +2001 ctx-rh-bankssts +2002 ctx-rh-caudalanteriorcingulate +2003 ctx-rh-caudalmiddlefrontal +2004 ctx-rh-corpuscallosum +2005 ctx-rh-cuneus +2006 ctx-rh-entorhinal +2007 ctx-rh-fusiform +2008 ctx-rh-inferiorparietal +2009 ctx-rh-inferiortemporal +2010 ctx-rh-isthmuscingulate +2011 ctx-rh-lateraloccipital +2012 ctx-rh-lateralorbitofrontal +2013 ctx-rh-lingual +2014 ctx-rh-medialorbitofrontal +2015 ctx-rh-middletemporal +2016 ctx-rh-parahippocampal +2017 ctx-rh-paracentral +2018 ctx-rh-parsopercularis +2019 ctx-rh-parsorbitalis +2020 ctx-rh-parstriangularis +2021 ctx-rh-pericalcarine +2022 ctx-rh-postcentral +2023 ctx-rh-posteriorcingulate +2024 ctx-rh-precentral +2025 ctx-rh-precuneus +2026 ctx-rh-rostralanteriorcingulate +2027 ctx-rh-rostralmiddlefrontal +2028 ctx-rh-superiorfrontal +2029 ctx-rh-superiorparietal +2030 ctx-rh-superiortemporal +2031 ctx-rh-supramarginal +2032 ctx-rh-frontalpole +2033 ctx-rh-temporalpole +2034 ctx-rh-transversetemporal +2035 ctx-rh-insula