#!/usr/bin/env python3 """Download + prepare MLE-bench competitions on the cluster, one Job per comp. gke/.venv/bin/python gke/prep_datasets.py submit --split both # the 5/15 split (20 comps) gke/.venv/bin/python gke/prep_datasets.py submit --lite # MLE-bench Lite (22 comps) gke/.venv/bin/python gke/prep_datasets.py submit --competitions spooky-author-identification gke/.venv/bin/python gke/prep_datasets.py status Each Job runs `mlebench prepare` from Kaggle (kaggle-json secret + rules you accepted on kaggle.com), tars prepared/, and uploads it to gs:///data//prepared.tar.gz. Already-uploaded comps are skipped unless --force. Prep pods run on spot by default (cheap; a preempted prep just reruns). """ from __future__ import annotations import argparse import json import sys import urllib.request from pathlib import Path sys.path.insert(0, str(Path(__file__).resolve().parent)) import k8s as K import settings as S REPO = Path(__file__).resolve().parents[1] LITE_URL = ("https://raw.githubusercontent.com/openai/mle-bench/main/" "experiments/splits/low.txt") # On-disk size hints (GB) for scratch sizing; wrong entries cost headroom, not # correctness. Union of rubric_gen/prepare_train.py's table + the split comps. SIZE_GB = { "spooky-author-identification": 0.1, "tabular-playground-series-dec-2021": 1, "lmsys-chatbot-arena": 1, "dog-breed-identification": 1, "dogs-vs-cats-redux-kernels-edition": 1, "random-acts-of-pizza": 0.1, "tweet-sentiment-extraction": 0.1, "new-york-city-taxi-fare-prediction": 6, "plant-pathology-2020-fgvc7": 3, "facebook-recruiting-iii-keyword-extraction": 4, "ventilator-pressure-prediction": 1, "smartphone-decimeter-2022": 20, "AI4Code": 4, "billion-word-imputation": 5, "cassava-leaf-disease-classification": 7, "osic-pulmonary-fibrosis-progression": 20, "petfinder-pawpularity-score": 2, "statoil-iceberg-classifier-challenge": 1, "bms-molecular-translation": 10, "nfl-player-contact-detection": 10, "stanford-covid-vaccine": 3, "whale-categorization-playground": 1, "aerial-cactus-identification": 0.1, "denoising-dirty-documents": 0.1, "detecting-insults-in-social-commentary": 0.1, "leaf-classification": 0.1, "mlsp-2013-birds": 1, "text-normalization-challenge-english-language": 1, "text-normalization-challenge-russian-language": 1, "nomad2018-predict-transparent-conductors": 0.1, "jigsaw-toxic-comment-classification-challenge": 1, "kuzushiji-recognition": 6, "histopathologic-cancer-detection": 8, "aptos2019-blindness-detection": 10, "siim-isic-melanoma-classification": 30, "tgs-salt-identification-challenge": 1, "the-icml-2013-whale-challenge-right-whale-redux": 1, # The giants. All 14 died in the first prep sweep because they were # absent here, defaulted to 25 GB, and got 120Gi scratch — disk-full # mid-download. Estimates are deliberately generous: wrong entries cost # headroom, not correctness. "3d-object-detection-for-autonomous-vehicles": 120, "cdiscount-image-classification-challenge": 60, "google-research-identify-contrails-reduce-global-warming": 450, "h-and-m-personalized-fashion-recommendations": 40, "herbarium-2020-fgvc7": 130, "herbarium-2021-fgvc8": 180, "herbarium-2022-fgvc9": 160, "icecube-neutrinos-in-deep-ice": 150, "inaturalist-2019-fgvc6": 230, "iwildcam-2019-fgvc6": 50, "iwildcam-2020-fgvc7": 110, "rsna-miccai-brain-tumor-radiogenomic-classification": 140, "seti-breakthrough-listen": 160, "siim-covid19-detection": 130, # The rules-unblocked batch (accepted 2026-08-16); DICOM comps sized up. "plant-pathology-2021-fgvc8": 20, "predict-volcanic-eruptions-ingv-oe": 35, "rsna-2022-cervical-spine-fracture-detection": 350, "rsna-breast-cancer-detection": 280, "tensorflow-speech-recognition-challenge": 5, "tensorflow2-question-answering": 20, "us-patent-phrase-to-phrase-matching": 1, "uw-madison-gi-tract-image-segmentation": 5, "vesuvius-challenge-ink-detection": 40, "vinbigdata-chest-xray-abnormalities-detection": 210, } # Comps whose FILE COUNT (not byte size) blows past the 4*size+20 formula. # bms-molecular-translation extracts ~4M small PNGs: zip + raw + prepared # coexist, and ext4 inode count scales with volume size, so give it room. SCRATCH_OVERRIDE_GI = { "bms-molecular-translation": 400, # 30 GB compressed but ~108 GB raw DICOM + prepared copies "siim-isic-melanoma-classification": 500, } def split_sides() -> dict[str, str]: """comp -> train|eval from the frozen 5/15 manifest (also feeds SIZE_GB).""" mf = json.loads((REPO / "rubric_gen/splits/error_side_5_15.json").read_text()) sides = {} for key, side in (("source_competitions", "train"), ("evaluation_competitions", "eval")): for c in mf[key]: sides[c["id"]] = side SIZE_GB[c["id"]] = float(c.get("dataset_size_gb") or 25) return sides def wanted(args) -> list[str]: sides = split_sides() comps: list[str] = [] if args.competitions: comps += [c.strip() for c in args.competitions.split(",") if c.strip()] if args.split in ("train", "both"): comps += [c for c, s in sides.items() if s == "train"] if args.split in ("eval", "both"): comps += [c for c, s in sides.items() if s == "eval"] if args.lite: with urllib.request.urlopen(LITE_URL, timeout=30) as r: comps += [l.strip() for l in r.read().decode().splitlines() if l.strip()] seen, out = set(), [] for c in comps: if c not in seen: seen.add(c) out.append(c) return out def in_bucket(comp: str) -> bool: return S.bucket().blob(f"data/{comp}/meta.json").exists() def cmd_submit(args) -> None: sides = split_sides() comps = wanted(args) if not comps: raise SystemExit("nothing selected — use --split/--lite/--competitions") K.upload_code("prep") # prep pods run gke/run_shard.py from this snapshot launched = skipped = 0 for comp in comps: if not args.force and in_bucket(comp): print(f"[have] {comp}") skipped += 1 continue scratch = SCRATCH_OVERRIDE_GI.get( comp, int(min(max(4 * SIZE_GB.get(comp, 25) + 20, 50), 2000))) slug = comp.lower().replace("_", "-")[:40].strip("-") K.delete_job(f"prep-{slug}") # clear any prior failed attempt job = K.make_prep_job(comp, sides.get(comp, "benchmark"), scratch, force=args.force, spot=not args.no_spot) K.submit_job(job) print(f"[job] {job.metadata.name} (scratch {scratch}Gi, " f"side {sides.get(comp, 'benchmark')})") launched += 1 print(f"\nlaunched {launched}, already in bucket {skipped}. " f"Watch: gke/.venv/bin/python gke/prep_datasets.py status") def cmd_status(args) -> None: comps = wanted(args) or sorted(split_sides()) have = 0 for comp in comps: if in_bucket(comp): meta = json.loads(S.bucket().blob(f"data/{comp}/meta.json") .download_as_text()) print(f"[have] {comp} ({meta['tar_bytes']/1e9:.2f} GB tar, " f"{meta['prep_minutes']} min prep)") have += 1 else: slug = comp.lower().replace("_", "-")[:40].strip("-") print(f"[....] {comp} job: {K.job_status(f'prep-{slug}')}") print(f"\n{have}/{len(comps)} in gs://{S.BUCKET}/data/") def cmd_logs(args) -> None: slug = args.competitions.lower().replace("_", "-")[:40].strip("-") print(K.pod_logs(f"prep-{slug}", tail=args.tail)) def main() -> None: ap = argparse.ArgumentParser() sub = ap.add_subparsers(dest="cmd", required=True) for name in ("submit", "status", "logs"): p = sub.add_parser(name) p.add_argument("--competitions", default="") p.add_argument("--split", choices=("train", "eval", "both", "none"), default="none") p.add_argument("--lite", action="store_true") p.add_argument("--force", action="store_true") p.add_argument("--no-spot", action="store_true") p.add_argument("--tail", type=int, default=60) args = ap.parse_args() {"submit": cmd_submit, "status": cmd_status, "logs": cmd_logs}[args.cmd](args) if __name__ == "__main__": main()