#!/usr/bin/env python """Submission format checker (no labels involved). Usage: python validate.py [submission.csv] Checks column layout, patient coverage, value range and monotonicity, then appends one JSON line per call to ./validate_log.jsonl. Passing this check means your file is GRADABLE — it says nothing about how good the scores are. """ import hashlib import json import sys import time from pathlib import Path import numpy as np import pandas as pd HERE = Path(__file__).resolve().parent TOL = 1e-6 def sha256(path): h = hashlib.sha256() with open(path, "rb") as f: for chunk in iter(lambda: f.read(1 << 16), b""): h.update(chunk) return h.hexdigest() def check(path: Path): issues = [] try: sub = pd.read_csv(path) except Exception as e: # noqa: BLE001 return [f"cannot read CSV: {e}"] grid_cols = pd.read_csv(HERE / "time_grid.csv")["column"].tolist() expected_cols = ["patient_id"] + grid_cols if list(sub.columns) != expected_cols: return [ f"columns mismatch: expected patient_id + the {len(grid_cols)} columns " f"named in time_grid.csv, got {len(sub.columns)} columns" ] expected_ids = set(pd.read_csv(HERE / "test_features.csv")["patient_id"].tolist()) ids = sub["patient_id"].tolist() if len(ids) != len(set(ids)): issues.append("duplicate patient_id rows") if set(ids) != expected_ids: issues.append( f"patient_id set mismatch: {len(expected_ids - set(ids))} missing, " f"{len(set(ids) - expected_ids)} unexpected" ) vals = sub[expected_cols[1:]].to_numpy(dtype=float) if not np.isfinite(vals).all(): issues.append("non-finite values (NaN/inf)") else: if vals.min() < -TOL or vals.max() > 1 + TOL: issues.append(f"values outside [0,1]: min={vals.min():.4g} max={vals.max():.4g}") n_viol = int((np.diff(vals, axis=1) > TOL).sum()) if n_viol: issues.append(f"not non-increasing: {n_viol} increasing steps") return issues def main(): target = Path(sys.argv[1]) if len(sys.argv) > 1 else HERE / "submission.csv" if not target.exists(): print(f"FAIL: {target} not found") sys.exit(1) issues = check(target) entry = { "ts": time.strftime("%Y-%m-%dT%H:%M:%S"), "file": str(target.name), "sha256": sha256(target), "valid": not issues, "issues": issues, } with open(HERE / "validate_log.jsonl", "a") as f: f.write(json.dumps(entry) + "\n") if issues: print("FAIL:") for i in issues: print(f" - {i}") sys.exit(1) print("OK: submission format is valid and gradable") if __name__ == "__main__": main()