import os import math import numpy as np import pandas as pd annotations_file_name = "surgeons_annotations" truncation_ratio = 0.85 target_fps = 5 video_fps = 25 doctors_annotations = pd.read_excel(f"../data/{annotations_file_name}.xlsx", engine='openpyxl') result_path = f"../data/{annotations_file_name.split('.')[0]}" index_data = pd.read_csv("../results/videos_frames_index.csv") for video_tag, video_data in doctors_annotations.groupby("video"): print(f"Processing video {video_tag}") video_name = f"video{str(video_tag).zfill(2)}" valid_frames = index_data[index_data["video_name"] == video_name]["final_frame"].iloc[0] video_result = pd.DataFrame(columns=["video_name", "image", "two_structures_score", "cystic_plate_score", "hc_triangle_score"]) video_result["image"] = list(range(valid_frames + 1)) video_result[["video_name", "two_structures_score", "cystic_plate_score", "hc_triangle_score"]] = [video_name, 0, 0, 0] for i, row in video_data.iterrows(): if row["two_structures"] + row["cystic_plate"] + row["hepatocystic_triangle"] > 0: tag = [row["two_structures"], row["cystic_plate"], row["hepatocystic_triangle"]] initial_frame = int(row["initial_minute"] * 60 * video_fps + row["initial_second"] * video_fps) final_frame = int(row["final_minute"] * 60 * video_fps + row["final_second"] * video_fps) assert initial_frame <= video_result.shape[0], "ERROR: initial frame is out of range" if final_frame >= video_result.shape[0]: final_frame = valid_frames for frame_number in range(initial_frame, final_frame+1): video_result.loc[frame_number, ["two_structures_score", "cystic_plate_score", "hc_triangle_score"]] = tag # truncate videos so we get rid off of a bunch of zeros initial_second = math.floor(video_result.shape[0] * truncation_ratio / 25) initial_frame = initial_second * 25 video_result = video_result[initial_frame:] # Reduce FPS by randomly extracting frames chunk_list = list() for offset in range(0, video_result.shape[0], video_fps): chunk = video_result[offset:offset+video_fps] chunk.reset_index(inplace=True, drop=True) replace_flag = False if chunk.shape[0] < target_fps: replace_flag = True index = list(np.random.choice(chunk.shape[0], target_fps, replace=replace_flag)) chunk = chunk.iloc[index] chunk_list.append(chunk) video_result = pd.concat(chunk_list) video_result.to_csv(os.path.join(result_path, f"{video_name}.csv"), index=False)