{ "table_description": "This table contains metadata about the slide microscopy (SM) series available in IDC. Each row corresponds to an instance from a DICOM Slide Microscopy series available from IDC, identified by `SOPInstanceUID`, and contains attributes specific to SM series, such as the pixel spacing at the maximum resolution layer, the power of the objective lens used to digitize the slide, and the anatomic location from where the imaged specimen was collected. This table can be joined with the main index table and/or with `sm_index` using the `SeriesInstanceUID` column.", "columns": [ { "name": "SOPInstanceUID", "type": "STRING", "mode": "NULLABLE", "description": "unique identifier of the instance" }, { "name": "SeriesInstanceUID", "type": "STRING", "mode": "NULLABLE", "description": "unique identifier of the series" }, { "name": "embeddingMedium_CodeMeaning", "type": "STRING", "mode": "REPEATED", "description": "embedding medium used for the slide preparation" }, { "name": "embeddingMedium_code_designator_value_str", "type": "STRING", "mode": "REPEATED", "description": "embedding medium code tuple" }, { "name": "tissueFixative_CodeMeaning", "type": "STRING", "mode": "REPEATED", "description": "tissue fixative used for the slide preparation" }, { "name": "tissueFixative_code_designator_value_str", "type": "STRING", "mode": "REPEATED", "description": "tissue fixative code tuple" }, { "name": "staining_usingSubstance_CodeMeaning", "type": "STRING", "mode": "REPEATED", "description": "staining substances used for the slide preparation" }, { "name": "staining_usingSubstance_code_designator_value_str", "type": "STRING", "mode": "REPEATED", "description": "staining using substance code tuple" }, { "name": "PixelSpacing_0", "type": "FLOAT", "mode": "NULLABLE", "description": "pixel spacing in mm, rounded to 2 significant figures" }, { "name": "ImageType", "type": "STRING", "mode": "REPEATED", "description": "DICOM ImageType attribute" }, { "name": "TransferSyntaxUID", "type": "STRING", "mode": "NULLABLE", "description": "DICOM TransferSyntaxUID attribute" }, { "name": "instance_size", "type": "INTEGER", "mode": "NULLABLE", "description": "size of the instance file in bytes" }, { "name": "TotalPixelMatrixColumns", "type": "INTEGER", "mode": "NULLABLE", "description": "number of columns in the image" }, { "name": "TotalPixelMatrixRows", "type": "INTEGER", "mode": "NULLABLE", "description": "number of rows in the image" }, { "name": "crdc_instance_uuid", "type": "STRING", "mode": "NULLABLE", "description": "unique identifier of the instance within the IDC" } ] }