bugged stringlengths 6 599k | fixed stringlengths 6 40.8M | __index_level_0__ int64 0 3.24M |
|---|---|---|
public ListIterator reverseIterator() { return list == null ? Collections.EMPTY_LIST.listIterator() : list.listIterator(list.size()); } | public ListIterator reverseIterator() { return list == null ? Collections.EMPTY_LIST.listIterator() : list.listIterator(list.size()); } | 3,229,877 |
public String toString() { if (list == null) { return ""; } StringBuffer b = new StringBuffer(); for (int i = 0; i < list.size(); i++) { b.append(list.get(i)); } return b.toString(); } | public String toString() { if (list == null) { return string + ": {}"; } StringBuffer b = new StringBuffer(); for (int i = 0; i < list.size(); i++) { b.append(list.get(i)); } return b.toString(); } | 3,229,878 |
public String toString() { if (list == null) { return ""; } StringBuffer b = new StringBuffer(); for (int i = 0; i < list.size(); i++) { b.append(list.get(i)); } return b.toString(); } | public String toString() { if (list == null) { return ""; } StringBuffer b = new StringBuffer(); for (int i = 0; i < list.size(); i++) { b.append(list.get(i)); } return string + ": {" + b.toString() + "}"; } | 3,229,879 |
public static RubyObject raise(Ruby ruby, RubyObject recv, RubyObject args[]) { switch (args.length) { case 0 : case 1 : throw new RaiseException(RubyException.newInstance(ruby, ruby.getExceptions().getRuntimeError(), args)); case 2 : RubyException excptn = (RubyExc... | public static RubyObject raise(Ruby ruby, RubyObject recv, RubyObject args[]) { switch (args.length) { case 0 : case 1 : if (args[0] instanceof RubyException) { throw new RaiseException((RubyException) args[0]); } else { throw new RaiseException(RubyException.newInstance(ruby, ruby.g... | 3,229,880 |
public void setPlane(byte[] buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getPlaneOffset(z, c, t); Integer size = getPlaneSize(); setRegion(size, offset, buffer); } | public void setPlane(ByteBuffer buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getPlaneOffset(z, c, t); Integer size = getPlaneSize(); setRegion(size, offset, buffer); } | 3,229,882 |
public void setPlane(byte[] buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getPlaneOffset(z, c, t); Integer size = getPlaneSize(); setRegion(size, offset, buffer); } | public void setPlane(byte[] buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getPlaneOffset(z, c, t); Integer size = getPlaneSize(); setRegion(size, offset, buffer); } | 3,229,883 |
public void setStack(byte[] buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getStackOffset(c, t); Integer size = getStackSize(); setRegion(size, offset, buffer); } | public void setStack(ByteBuffer buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getStackOffset(c, t); Integer size = getStackSize(); setRegion(size, offset, buffer); } | 3,229,884 |
public void setStack(byte[] buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getStackOffset(c, t); Integer size = getStackSize(); setRegion(size, offset, buffer); } | public void setStack(byte[] buffer, Integer z, Integer c, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getStackOffset(c, t); Integer size = getStackSize(); setRegion(size, offset, buffer); } | 3,229,885 |
public void setTimepoint(byte[] buffer, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getTimepointOffset(t); Integer size = getTimepointSize(); setRegion(size, offset, buffer); } | public void setTimepoint(ByteBuffer buffer, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getTimepointOffset(t); Integer size = getTimepointSize(); setRegion(size, offset, buffer); } | 3,229,886 |
public void setTimepoint(byte[] buffer, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getTimepointOffset(t); Integer size = getTimepointSize(); setRegion(size, offset, buffer); } | public void setTimepoint(byte[] buffer, Integer t) throws IOException, DimensionsOutOfBoundsException, BufferOverflowException { Long offset = getTimepointOffset(t); Integer size = getTimepointSize(); setRegion(size, offset, buffer); } | 3,229,887 |
public DatasetBrowserCanvas(MainWindow mainWindow) { super(); this.mainWindow = mainWindow; layer = getLayer(); setDefaultRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); setInteractingRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); setAnimatingRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); set... | public DatasetBrowserCanvas(MainWindow mainWindow) { super(); this.mainWindow = mainWindow; layer = getLayer(); setDefaultRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); setInteractingRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); setAnimatingRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); set... | 3,229,889 |
private void arrangeDisplay(Collection datasets) { // initialize and find clear out the layer layer.removeAllChildren(); if (datasets == null) { return; } // calculate the total area, adding nodes to the layer // as we go. totalArea = 0; Iterator iter = datasets.iterator(); while (iter.hasNext()) { Br... | private void arrangeDisplay(Collection datasets) { // initialize and find clear out the layer layer.removeAllChildren(); if (datasets == null) { return; } // calculate the total area, adding nodes to the layer // as we go. totalArea = 0; Iterator iter = datasets.iterator(); while (iter.hasNext()) { Br... | 3,229,890 |
public void completeInitialization() { // set up listeners addInputEventListener(eventHandler); final PCamera camera = getCamera(); camera.addInputEventListener(new DatasetBrowserToolTipHandler(camera)); // center view eventHandler.animateToBounds(getBufferedBounds()); } | public void completeInitialization() { // set up listeners addInputEventListener(eventHandler); final PCamera camera = getCamera(); camera.addInputEventListener(new DatasetBrowserToolTipHandler(camera)); // center view eventHandler.animateToBounds(getBufferedBounds()); } | 3,229,891 |
private void displayDatasets(Collection datasets) { doLayout(datasets); System.err.println("displaying datasets. animating to "+getBufferedBounds()); eventHandler.animateToBounds(getBufferedBounds()); } | private void displayDatasets(Collection datasets) { doLayout(datasets); System.err.println("displaying datasets. animating to "+getBufferedBounds()); eventHandler.animateToBounds(getBufferedBounds()); } | 3,229,892 |
private void doLayout(Collection datasets) { if (datasets == null) return; layer.setScale(1.0); x = HGAP; y = 0; // strips is a vector of vectors. Each element in strips is a vector // that contains items from a given strip, as calculated by //arrangeDisplay() Iterator iter = strips.iterator(); double ma... | private void doLayout(Collection datasets) { if (datasets == null) return; layer.setScale(1.0); x = HGAP; y = 0; // strips is a vector of vectors. Each element in strips is a vector // that contains items from a given strip, as calculated by //arrangeDisplay() Iterator iter = strips.iterator(); double ma... | 3,229,893 |
public void setSelectedProject(BrowserProjectSummary proj) { System.err.println("dataset browser ..set selected project to ..."+proj); if (proj == selectedProject) // no change return; selectedProject = proj; Collection datasetsToDisplay; // ok. what to do now? // cases: if (proj == null) { if (selectedD... | public void setSelectedProject(BrowserProjectSummary proj) { System.err.println("dataset browser ..set selected project to ..."+proj); if (proj == selectedProject) // no change return; selectedProject = proj; Collection datasetsToDisplay; // ok. what to do now? // cases: if (proj == null) { if (selectedD... | 3,229,896 |
public void showService(String service) { if (serviceMap.containsKey(service)) { cardLayout.show(cardPanel, service); } else { // Create new Form SearchForm searchForm = new SearchForm(service); cardPanel.add(searchForm, service); serviceMa... | public void showService(String service) { if (serviceMap.containsKey(service)) { cardLayout.show(cardPanel, service); } else { // Create new Form SearchForm searchForm = new SearchForm(service); cardPanel.add(searchForm, service); serviceMa... | 3,229,897 |
public void performSearch() { searchResults.clearTable(); SwingWorker worker = new SwingWorker() { ReportedData data; public Object construct() { try { Form answerForm = questionForm.getFilledForm(); data = searchManager.getSea... | publicvoidperformSearch(){searchResults.clearTable();SwingWorkerworker=newSwingWorker(){ReportedDatadata;publicObjectconstruct(){try{FormanswerForm=questionForm.getFilledForm();data=searchManager.getSearchResults(answerForm,serviceName);}catch(XMPPExceptione){Log.error("Unabletoloadsearchservice.",e);}returndata;}publi... | 3,229,898 |
public void performSearch() { searchResults.clearTable(); SwingWorker worker = new SwingWorker() { ReportedData data; public Object construct() { try { Form answerForm = questionForm.getFilledForm(); data = searchManager.getSea... | public void performSearch() { searchResults.clearTable(); SwingWorker worker = new SwingWorker() { ReportedData data; public Object construct() { try { Form answerForm = questionForm.getFilledForm(); data = searchManager.getSea... | 3,229,899 |
public Object doInHibernate(Session session) throws HibernateException { OMEModel o = (OMEModel) session.load(klazz,id); BaseModelUtils u = o.getUtils(); return o; } | public Object doInHibernate(Session session) throws HibernateException { OMEModel o = (OMEModel) session.load(klazz,id); BaseModelUtils u = o.getUtils(); return o; } | 3,229,900 |
public Object doInHibernate(Session session) throws HibernateException { Criteria c = session.createCriteria(klazz); c.add(Expression.ilike("name",name,MatchMode.ANYWHERE)); return c.uniqueResult(); } | public Object doInHibernate(Session session) throws HibernateException { Criteria c = session.createCriteria(klazz); c.add(Expression.ilike("name",name,MatchMode.ANYWHERE)); return c.uniqueResult(); } | 3,229,901 |
public Object doInHibernate(Session session) throws HibernateException { for (Object o : objects){ session.saveOrUpdate(o); } return null; } | public Object doInHibernate(Session session) throws HibernateException { for (Object o : objects){ session.saveOrUpdate(o); } return null; } | 3,229,902 |
public static RubyBignum unmarshalFrom(UnmarshalStream input) throws IOException { int signum = (input.readUnsignedByte() == '+' ? 1 : -1); int shortLength = input.unmarshalInt(); byte[] digits = new byte[shortLength * 2]; for (int i = digits.length - 1; i >= 0; i--) { digits[... | public static RubyBignum unmarshalFrom(UnmarshalStream input) throws IOException { int signum = (input.readUnsignedByte() == '+' ? 1 : -1); int shortLength = input.unmarshalInt(); byte[] digits = new byte[shortLength * 2]; for (int i = digits.length - 1; i >= 0; i--) { digits[... | 3,229,903 |
public List childNodes() { return Collections.EMPTY_LIST; } | public List childNodes() { return EMPTY_LIST; } | 3,229,904 |
final public Object evaluate(Context context) throws ContextException { try { ByteArrayOutputStream os = new ByteArrayOutputStream(256); FastWriter fw = new FastWriter(os, "UTF8"); write(fw,context); fw.flush(); return os.toString("UTF8"); } catch(IOException ... | final public Object evaluate(Context context) throws ContextException { try { ByteArrayOutputStream os = new ByteArrayOutputStream(256); FastWriter fw = new FastWriter(os, context.getEncoding()); write(fw,context); fw.flush(); return os.toString("UTF8"); } cat... | 3,229,905 |
final public Object evaluate(Context context) throws ContextException { try { ByteArrayOutputStream os = new ByteArrayOutputStream(256); FastWriter fw = new FastWriter(os, "UTF8"); write(fw,context); fw.flush(); return os.toString("UTF8"); } catch(IOException ... | final public Object evaluate(Context context) throws ContextException { try { ByteArrayOutputStream os = new ByteArrayOutputStream(256); FastWriter fw = new FastWriter(os, "UTF8"); write(fw,context); fw.flush(); return os.toString(context.getEncoding()); } cat... | 3,229,906 |
public void setColumnNames(String[] colNames){ _colNames = colNames; } | public void setColumnNames(String[] colNames){ _colNames = colNames; } | 3,229,907 |
public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | 3,229,910 |
public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | 3,229,911 |
public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | 3,229,912 |
public GatewayButton(final Transport transport) { setLayout(new GridBagLayout()); setOpaque(false); this.transport = transport; final StatusBar statusBar = SparkManager.getWorkspace().getStatusBar(); final JPanel commandPanel = statusBar.getCommandPanel(); button.setIcon(tr... | public GatewayButton(final Transport transport) { setLayout(new GridBagLayout()); setOpaque(false); this.transport = transport; final StatusBar statusBar = SparkManager.getWorkspace().getStatusBar(); final JPanel commandPanel = statusBar.getCommandPanel(); button.setIcon(tr... | 3,229,914 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,915 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | try { try { private LoadServiceResource findFile(String name) {try { try { try { try { //try { try { try { try { try {try { try { try { try { try { try { if (name.startsWith("jar:")) {try { try { try { try { try { try { try { try { try {try { try { try { try { try { try { try { try { try { try { return new LoadServiceR... | 3,229,916 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,917 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,918 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,919 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,920 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | try { try { private LoadServiceResource findFile(String name) {try { try { try { try { //try { try { try { try { try {try { try { try { try { try { try { if (name.startsWith("jar:")) {try { try { try { try { try { try { try { try { try {try { try { try { try { try { try { try { try { try { try { return new LoadServiceR... | 3,229,921 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,922 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,923 |
private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 3,229,924 |
public void init(List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String) iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath... | public void init(List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String) iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath... | 3,229,925 |
public void init(List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String) iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath... | public void init(List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String) iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath... | 3,229,926 |
private boolean isRequireable(URL loc) { if (loc != null) { if (loc.getProtocol().equals("file") && new java.io.File(loc.getFile()).isDirectory()) { return false; } try { loc.openConnection(); return true; } catch (Exc... | private boolean isRequireable(URL loc) { if (loc != null) { if (loc.getProtocol().equals("file") && new java.io.File(loc.getFile()).isDirectory()) { return false; } try { loc.openConnection(); return true; } catch (Exc... | 3,229,927 |
private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.getValue()); if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); } try { file = (NormalizedFile)file.getCanonicalFile(... | private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.toString()); if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); } try { file = (NormalizedFile)file.getCanonicalFile(... | 3,229,928 |
private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.getValue()); if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); } try { file = (NormalizedFile)file.getCanonicalFile(... | private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.getValue()); if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.toString()); } try { file = (NormalizedFile)file.getCanonicalFile(... | 3,229,929 |
public static IRubyObject size(IRubyObject recv, RubyString filename) { NormalizedFile file = newFile(filename); if (!file.exists()) { throw recv.getRuntime().newErrnoENOENTError("No such file: " + filename.getValue()); } return filename.getRuntime().newFixnum(file.len... | public static IRubyObject size(IRubyObject recv, RubyString filename) { NormalizedFile file = newFile(filename); if (!file.exists()) { throw recv.getRuntime().newErrnoENOENTError("No such file: " + filename); } return filename.getRuntime().newFixnum(file.length()); ... | 3,229,930 |
public static XmlBeanDefinitionReader createBeanDefinitionReader( SpringApplicationContext applicationContext, BeanDefinitionRegistry registry, List xmlPreprocessors) { String version = SpringVersion.getVersion(); String className = "org.apache.... | public static XmlBeanDefinitionReader createBeanDefinitionReader( SpringApplicationContext applicationContext, BeanDefinitionRegistry registry, List xmlPreprocessors) { String version = "2.0"; try { Class spring20Clazz = Class.forName("org.springfram... | 3,229,931 |
public static void createGlobals(IRuby runtime) { // Version information: IRubyObject version = runtime.newString(Constants.RUBY_VERSION).freeze(); IRubyObject release = runtime.newString(Constants.COMPILE_DATE).freeze(); IRubyObject platform = runtime.newString(Constants.PLATFORM).freez... | public static void createGlobals(IRuby runtime) { // Version information: IRubyObject version = runtime.newString(Constants.RUBY_VERSION).freeze(); IRubyObject release = runtime.newString(Constants.COMPILE_DATE).freeze(); IRubyObject platform = runtime.newString(Constants.PLATFORM).freez... | 3,229,932 |
private void initComponents() { createMenuBar(); createLeftMenuBar(); caseSensitive = new JCheckBox("Match case"); caseSensitive.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { JCheckBox source = (JCheckBox) e.getSource(); ... | private void initComponents() { createMenuBar(); createLeftMenuBar(); caseSensitive = new JCheckBox("Match case"); caseSensitive.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { JCheckBox source = (JCheckBox) e.getSource(); ... | 3,229,933 |
public void stateChanged(ChangeEvent e) { JCheckBox source = (JCheckBox) e.getSource(); model.setCaseSensitive(source.isSelected()); } | public void stateChanged(ChangeEvent e) { JCheckBox source = (JCheckBox) e.getSource(); finder.setCaseSensitive(source.isSelected()); } | 3,229,934 |
public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 3,229,936 |
public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 3,229,937 |
public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 3,229,938 |
public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 3,229,939 |
public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 3,229,940 |
public void close() throws IOException { if (bufferedIO) { /* flush output buffer before close */ if (outBuffer.position() > 0) { outBuffer.flip(); flushOutBuffer(); } } channel.close(); } | public void close() throws IOException { if (bufferedIO) { /* flush output buffer before close */ if (outBuffer.position() > 0) { outBuffer.flip(); flushOutBuffer(); } } channel.close(); } | 3,229,942 |
public void putc(int c) throws IOException, BadDescriptorException { checkWritable(); setupBufferedIO(); if (!outBuffer.hasRemaining()) { outBuffer.flip(); flushOutBuffer(); } outBuffer.put((byte) (c & 0xff)); } | public void putc(int c) throws IOException, BadDescriptorException { checkWritable(); if (!outBuffer.hasRemaining()) { outBuffer.flip(); flushOutBuffer(); } outBuffer.put((byte) (c & 0xff)); } | 3,229,943 |
private void setupBufferedIO() { if (bufferedIO) { return; } outBuffer = ByteBuffer.allocate(BLOCK_SIZE); inBuffer = ByteBuffer.allocate(BLOCK_SIZE); flushInBuffer(); bufferedIO = true; } | private void setupBufferedIO() { if (bufferedIO) { return; } inBuffer = ByteBuffer.allocate(BLOCK_SIZE); flushInBuffer(); bufferedIO = true; } | 3,229,944 |
public int syswrite(String string) throws BadDescriptorException, IOException { checkWritable(); checkBuffered(); ByteBuffer buffer = ByteBuffer.wrap(RubyString.stringToBytes(string)); while (buffer.hasRemaining()) { if (((WritableByteChannel) channel).write(buffer) < 0) { /... | public int syswrite(String string) throws BadDescriptorException, IOException { checkWritable(); checkBuffered(); ByteBuffer buffer = ByteBuffer.wrap(RubyString.stringToBytes(string)); while (buffer.hasRemaining()) { if (((WritableByteChannel) channel).write(buffer) < 0) { /... | 3,229,945 |
public int write(String string) throws IOException, BadDescriptorException { setupBufferedIO(); checkWritable(); ByteBuffer buffer = ByteBuffer.wrap(RubyString.stringToBytes(string)); byte[] trigger; IRubyObject dollar_backslash = getRuntime().getGlobalVariables().get("$\\"); ... | public int write(String string) throws IOException, BadDescriptorException { checkWritable(); ByteBuffer buffer = ByteBuffer.wrap(RubyString.stringToBytes(string)); byte[] trigger; IRubyObject dollar_backslash = getRuntime().getGlobalVariables().get("$\\"); if (dollar_backs... | 3,229,947 |
public EnumType(Properties attrs){super(attrs);} | public EnumType(Properties attrs){super(attrs);} | 3,229,948 |
private JComponent buildCenterComponent() { switch (model.getEditorType()) { case Editor.CREATE_EDITOR: return doBasic; case Editor.PROPERTIES_EDITOR: IconManager im = IconManager.getInstance(); JTabbedPane tabs = new JTabbedPane(JTabbedPa... | private JComponent buildCenterComponent() { switch (model.getEditorType()) { case Editor.CREATE_EDITOR: return doBasic; case Editor.PROPERTIES_EDITOR: IconManager im = IconManager.getInstance(); JTabbedPane tabs = new JTabbedPane(JTabbedPa... | 3,229,949 |
private JComponent buildCenterComponent() { switch (model.getEditorType()) { case Editor.CREATE_EDITOR: return doBasic; case Editor.PROPERTIES_EDITOR: IconManager im = IconManager.getInstance(); JTabbedPane tabs = new JTabbedPane(JTabbedPa... | private JComponent buildCenterComponent() { switch (model.getEditorType()) { case Editor.CREATE_EDITOR: return doBasic; case Editor.PROPERTIES_EDITOR: IconManager im = IconManager.getInstance(); JTabbedPane tabs = new JTabbedPane(JTabbedPa... | 3,229,950 |
ZoomWindowUI(JFrame parent, LensComponent lensComponent) { super(parent); this.lensComponent = lensComponent; setTitle("Zoom Window"); setSize(300,300); setLocation(900,200); setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE); addWindowListener( new WindowAdapter() { public void windowClosing( WindowEvent... | ZoomWindowUI(JFrame parent, LensComponent lensComponent) { super(parent); this.lensComponent = lensComponent; setTitle("Zoom Window"); setSize(300,300); setLocation(900,200); setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE); addWindowListener( new WindowAdapter() { public void windowClosing( WindowEvent... | 3,229,951 |
public void test_multi_txs() throws Exception { ReadWriteLock rwl = null; fail(); } | public void test_multi_txs() throws Exception { ReadWriteLock rwl = null; } | 3,229,952 |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria((Class) value(CLASS)); c.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(C... | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(Image.class); c.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(Class) val... | 3,229,953 |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria((Class) value(CLASS)); c.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(C... | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria((Class) value(CLASS)); c.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(C... | 3,229,954 |
public static IRubyObject newInstance(IRubyObject recv, IRubyObject[] args) { Cipher result = new Cipher(recv.getRuntime(), (RubyClass)recv); result.callMethod(recv.getRuntime().getCurrentContext(),"initialize",args); return result; } | public static IRubyObject newInstance(IRubyObject recv, IRubyObject[] args) { Cipher result = new Cipher(recv.getRuntime(), (RubyClass)recv); result.callInit(args); return result; } | 3,229,955 |
public void showInspector() { if (imageInspector == null) imageInspector = new ImageInspector(this, presentation.getCanvas(), magFactor); presentation.getCanvas().getManager().setClick(true); UIUtilities.centerAndShow(imageInspector); ... | public void showInspector() { if (imageInspector == null) imageInspector = new ImageInspector(this, presentation.getCanvas(), magFactor, abstraction.getImageWidth(), abstraction.getImageHeight()); presentation.getCanvas().getManager().setClick(... | 3,229,956 |
private void prepareArguments(ThreadContext context, IRuby runtime, Scope scope, IRubyObject receiver, IRubyObject[] args) { int expectedArgsCount = argsNode.getArgsCount(); int restArg = argsNode.getRestArg(); boolean hasOptArgs = argsNode.getOptArgs() != null; // FIXME: This seems redu... | private void prepareArguments(ThreadContext context, IRuby runtime, Scope scope, IRubyObject receiver, IRubyObject[] args) { int expectedArgsCount = argsNode.getArgsCount(); int restArg = argsNode.getRestArg(); boolean hasOptArgs = argsNode.getOptArgs() != null; // FIXME: This seems redu... | 3,229,957 |
private String handleError( Variable variable, Context context, Exception problem ) { String strError; ArrayList arlErrors = null; PropertyException propEx = null; if (problem instanceof PropertyException) propEx = (PropertyException)problem; else { ... | private String handleError( Variable variable, Context context, Exception problem ) { String strError; ArrayList arlErrors = null; PropertyException propEx = null; if (problem instanceof PropertyException) propEx = (PropertyException)problem; else ... | 3,229,958 |
private String handleError( Variable variable, Context context, Exception problem ) { String strError; ArrayList arlErrors = null; PropertyException propEx = null; if (problem instanceof PropertyException) propEx = (PropertyException)problem; else { ... | private String handleError( Variable variable, Context context, Exception problem ) { String strError; ArrayList arlErrors = null; PropertyException propEx = null; if (problem instanceof PropertyException) propEx = (PropertyException)problem; else { ... | 3,229,959 |
public List getList() { return list; } | public ArrayList getList() { return list; } | 3,229,960 |
public void testExperimenterShouldAlwaysExist() throws Exception { Experimenter root = (Experimenter) iQuery.findByQuery(Experimenter.class.getName(), new Parameters().addId(0L)); assertNotNull("Root has to be define.",root); // FIXME assertNotNull(... | public void testExperimenterShouldAlwaysExist() throws Exception { Experimenter root = (Experimenter) iQuery.findByQuery(Experimenter.class.getName(), new Parameters().addId(0L)); assertNotNull("Root has to be defined.",root); // FIXME assertNotNull... | 3,229,961 |
public void setEnabled(boolean enabled) { if (this.enabled != enabled) { this.enabled = enabled; if (headingItem != null) headingItem.setEnabled(enabled); } } | public void setEnabled(boolean enabled) { if (this.enabled != enabled) { this.enabled = enabled; if (headingItem != null) headingItem.setEnabled(enabled); } } | 3,229,962 |
public void update() { super.update(); if (headingItem != null && headingItem.isEnabled() != enabled) { headingItem.setEnabled(enabled); } } | public void update() { super.update(); if (headingItem != null && headingItem.isEnabled() != enabled) { headingItem.setEnabled(enabled); } } | 3,229,963 |
public void updateAll(boolean arg0) { super.updateAll(arg0); if (headingItem != null && headingItem.isEnabled() != enabled) { headingItem.setEnabled(enabled); } } | public void updateAll(boolean arg0) { super.updateAll(arg0); if (headingItem != null && headingItem.isEnabled() != enabled) { headingItem.setEnabled(enabled); } } | 3,229,964 |
public IRubyObject unmarshalObject() throws IOException { int type = readUnsignedByte(); IRubyObject result; if (type == '@') { result = cache.linkedByIndex(unmarshalInt()); } else if (type == ';') { result = cache.symbolByIndex(unmarshalInt()); } else { ... | public IRubyObject unmarshalObject() throws IOException { int type = readUnsignedByte(); IRubyObject result; if (type == '@') { result = cache.linkedByIndex(unmarshalInt()); } else if (type == ';') { result = cache.symbolByIndex(unmarshalInt()); } else { ... | 3,229,966 |
private IRubyObject userUnmarshal() throws IOException { String className = ((RubySymbol) unmarshalObject()).toId(); String marshaled = unmarshalString(); RubyModule classInstance = runtime.getRubyModule(className); return classInstance.callMethod( "_load", RubyStri... | private IRubyObject userUnmarshal() throws IOException { String className = ((RubySymbol) unmarshalObject()).toId(); String marshaled = unmarshalString(); RubyModule classInstance = runtime.getRubyModule(className); IRubyObject result = classInstance.callMethod( "_load", ... | 3,229,967 |
private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasNode ... | private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasNode ... | 3,229,969 |
private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasNode ... | private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasNode ... | 3,229,970 |
public DisplayOption(Integer attributeId, Boolean redOn, Integer ZStart, Boolean blueOn, String colorMap, Integer ZStop, Float zoom, Integer TStop, Integer TStart, Boolean greenOn, Boolean displayRgb, org.openmicroscopy.omero.model.Image image, org.openmicroscopy.omero.model.ImagePixel imagePixel, org.openmicroscop... | public DisplayOption(Integer attributeId, Boolean redOn, Integer ZStart, Boolean blueOn, String colorMap, Integer ZStop, Float zoom, Integer TStop, Integer TStart, Boolean greenOn, Boolean displayRgb, org.openmicroscopy.omero.model.Image image, org.openmicroscopy.omero.model.ImagePixel imagePixel, org.openmicroscop... | 3,229,971 |
public org.openmicroscopy.omero.model.Image getImage() { return this.image; } | public Image getImage() { return this.image; } | 3,229,972 |
public org.openmicroscopy.omero.model.ImagePixel getImagePixel() { return this.imagePixel; } | public ImagePixel getImagePixel() { return this.imagePixel; } | 3,229,973 |
public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { return this.moduleExecution; } | public ModuleExecution getModuleExecution() { return this.moduleExecution; } | 3,229,974 |
public void setImage(org.openmicroscopy.omero.model.Image image) { this.image = image; } | public void setImage(Image image) { this.image = image; } | 3,229,975 |
public void setImagePixel(org.openmicroscopy.omero.model.ImagePixel imagePixel) { this.imagePixel = imagePixel; } | public void setImagePixel(ImagePixel imagePixel) { this.imagePixel = imagePixel; } | 3,229,976 |
public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { this.moduleExecution = moduleExecution; } | public void setModuleExecution(ModuleExecution moduleExecution) { this.moduleExecution = moduleExecution; } | 3,229,977 |
private void handleExit(String element){ if (Property.FIELDS.contains(element)){ if (null==property){ throw new IllegalStateException("Exiting non-extant property!\n"+"Element:"+element+"\nType:"+type+"\nProperty:"+property); } if (null==type){ throw new IllegalStateException("Inside of non-extant... | private void handleExit(String element){ if (Property.FIELDS.contains(element)){ if (null==property){ throw new IllegalStateException("Exiting non-extant property!\n"+"Element:"+element+"\nType:"+type+"\nProperty:"+property); } if (null==type){ throw new IllegalStateException("Inside of non-extant... | 3,229,978 |
public Set process(){ return types; } | public Set process(){ return types; } | 3,229,979 |
public SaxReader(String filename){ xmlFile = this.getClass().getClassLoader().getResource(filename); init(); } | public SaxReader(String filename){ xmlFile = this.getClass().getClassLoader().getResource(filename); init(); } | 3,229,980 |
public Set parse(){ try { parser.parse(xmlFile.getPath(), handler); } catch (Exception e) { throw new RuntimeException( "Error parsing "+xmlFile+" :\n"+e.getMessage(),e); } return handler.process(); } | public Set parse(){ try { parser.parse(xmlFile.getPath(), handler); } catch (Exception e) { throw new RuntimeException( "Error parsing "+xmlFile+" :\n"+e.getMessage(),e); } return handler.process(); } | 3,229,981 |
public Set parse(){ try { parser.parse(xmlFile.getPath(), handler); } catch (Exception e) { throw new RuntimeException( "Error parsing "+xmlFile+" :\n"+e.getMessage(),e); } return handler.process(); } | public Set parse(){ try { parser.parse(xmlFile.getPath(), handler); } catch (Exception e) { throw new RuntimeException( "Error parsing "+xmlFile+" :\n"+e.getMessage(),e); } return handler.process(); } | 3,229,982 |
public Set getProperties() { return properties; } | public Set getProperties() { return properties; } | 3,229,983 |
public abstract HttpMethodBase marshal() throws ImageServiceException; | public abstract HttpMethod marshal() throws ImageServiceException; | 3,229,984 |
void saveROIResult(String format, String name, String msg) { UserNotifier un = control.getRegistry().getUserNotifier(); if (mng.getROIStats() == null) un.notifyError("Save ROI results", msg); else { name +="."+format; //Add extension File f = new File(name);... | void saveROIResult(String format, String name, String msg) { UserNotifier un = control.getRegistry().getUserNotifier(); if (mng.getROIStats() == null) un.notifyError("Save ROI results", msg); else { name +="."+format; //Add extension File f = new File(name);... | 3,229,985 |
String[][] getROIStats() { return control.getROIStats(); } | String[][] getROIStats() { return control.getROIStats(); } | 3,229,986 |
public void declare(JFormatter f) { if (jdoc != null) f.nl().g(jdoc); if (annotations != null){ for( int i=0; i<annotations.size(); i++ ) f.g(annotations.get(i)).nl(); } f.g(mods).p(classType.declarationToken).id(name).d(generifiable); if (supe... | public void declare(JFormatter f) { if (jdoc != null) f.nl().g(jdoc); if (annotations != null){ for( int i=0; i<annotations.size(); i++ ) f.g(annotations.get(i)).nl(); } f.g(mods).p(classType.declarationToken).id(name).d(generifiable); if (supe... | 3,229,990 |
public JEnumConstant enumConstant(String name){ JEnumConstant ec = new JEnumConstant(this, name); enumConstantsByName.put(name, ec); return ec; } | public JEnumConstant enumConstant(String name){ JEnumConstant ec = new JEnumConstant(this, name); enumConstantsByName.put(name, ec); return ec; } | 3,229,991 |
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