""" ================================================================================ 脚本名称 (Script Name): asrm_preprocess.py 原本用途 (Original Purpose): 基于 ASRMNet 深度卷积网络的眼底图像质量自动评估与质控前处理。评估眼底相片的照明均匀度、模糊伪影、屈光介质浑浊以及临床可诊断性(Gradability),输出质量分级并拦截不可评样本。 适用数据集 (Target Dataset): 全库彩色眼底图像(CFP),包括单中心门诊及大规模筛查图像。 作者与归属 (Author/Provenance): 张焕 (Zhanghuan), 浙江大学多模态眼科团队 输入要求 (Input): 待评测的彩色眼底相片(JPG/PNG) 输出结果 (Output): 图像质量评分(可诊断/可疑/不可诊断)及预处理归一化图像 依赖环境 (Dependencies): torch, torchvision, opencv-python, numpy, pillow ================================================================================ """ import os import cv2 import torch import numpy as np from torch.utils.data import Dataset, DataLoader, WeightedRandomSampler from torchvision import transforms from typing import List, Tuple, Dict import random class FundusQualityDataset(Dataset): """ Dataset for fundus quality classification Combines: - Labeled invalid images - Labeled valid images - Unlabeled raw images (optional) """ def __init__( self, invalid_dir: str, valid_dir: str, raw_dir: str = None, img_size: int = 512, transform=None, use_raw: bool = False, raw_pseudo_label_threshold: float = 0.5 ): self.img_size = img_size self.transform = transform self.use_raw = use_raw self.raw_pseudo_label_threshold = raw_pseudo_label_threshold # Load labeled data self.invalid_paths = self._load_image_paths(invalid_dir) self.valid_paths = self._load_image_paths(valid_dir) # Load unlabeled raw data self.raw_paths = [] if use_raw and raw_dir is not None: self.raw_paths = self._load_image_paths(raw_dir) # Combine all paths and create labels self.image_paths = [] self.labels = [] self.is_labeled = [] # Invalid images (label=0) for path in self.invalid_paths: self.image_paths.append(path) self.labels.append(0) self.is_labeled.append(True) # Valid images (label=1) for path in self.valid_paths: self.image_paths.append(path) self.labels.append(1) self.is_labeled.append(True) # Raw images (unlabeled, label=-1 initially) if use_raw: for path in self.raw_paths: self.image_paths.append(path) self.labels.append(-1) # Pseudo label placeholder self.is_labeled.append(False) # Pseudo labels dict (for raw images) self.pseudo_labels = {} print(f"Dataset loaded: {len(self.invalid_paths)} invalid, " f"{len(self.valid_paths)} valid, " f"{len(self.raw_paths)} raw") # f:\oinn\image_filter\FQ-ManifoldNet\model_ASRMNet\asrm_preprocess.py # 修改第30行附近的 _load_image_paths 函数 def _load_image_paths(self, directory: str) -> List[str]: """Load all image paths from directory""" if not os.path.exists(directory): print(f"⚠️ 目录不存在: {directory}") return [] image_paths = [] # 支持的扩展名(包含DICOM格式) valid_extensions = ('.png', '.jpg', '.jpeg', '.tif', '.tiff', '.bmp', '.dcm') # 列出所有文件进行调试 all_files = os.listdir(directory) print(f"📂 {os.path.basename(directory)}: 找到 {len(all_files)} 个文件") # 尝试多种方式扫描 for filename in all_files: # 方法1: 检查小写扩展名 if filename.lower().endswith(valid_extensions): image_paths.append(os.path.join(directory, filename)) print(f"✅ {os.path.basename(directory)}: 成功加载 {len(image_paths)} 张图像") # 如果还是0,尝试直接使用所有文件(跳过目录) if len(image_paths) == 0: print(f"🔍 {os.path.basename(directory)}: 尝试直接使用所有文件...") for filename in all_files: filepath = os.path.join(directory, filename) if os.path.isfile(filepath): image_paths.append(filepath) print(f" 第二次尝试: 加载了 {len(image_paths)} 张") return image_paths def set_pseudo_labels(self, pseudo_label_dict: Dict[str, float]): """ Set pseudo labels for raw images Args: pseudo_label_dict: {image_path: quality_score} (0-1) """ self.pseudo_labels = pseudo_label_dict def __len__(self) -> int: return len(self.image_paths) def __getitem__(self, idx: int) -> Dict: img_path = self.image_paths[idx] # Load image img = cv2.imread(img_path) if img is None: # Return empty image if loading fails img = np.zeros((self.img_size, self.img_size, 3), dtype=np.uint8) # Convert to RGB img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB) # Resize img = cv2.resize(img, (self.img_size, self.img_size)) # Apply transforms if self.transform is not None: img = self.transform(img) # Get label if self.is_labeled[idx]: label = self.labels[idx] else: # Use pseudo label if available, else return -1 if img_path in self.pseudo_labels: score = self.pseudo_labels[img_path] label = 1 if score > self.raw_pseudo_label_threshold else 0 else: label = -1 return { 'image': img, 'label': label, 'is_labeled': self.is_labeled[idx], 'path': img_path } def get_train_transforms(img_size: int = 512): """Training data transforms with augmentation""" return transforms.Compose([ transforms.ToPILImage(), transforms.RandomHorizontalFlip(p=0.5), transforms.RandomRotation(degrees=15), transforms.ColorJitter( brightness=0.2, contrast=0.2, saturation=0.2, hue=0.1 ), transforms.ToTensor(), transforms.Normalize( mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225] ) ]) def get_val_transforms(img_size: int = 512): """Validation/test data transforms (no augmentation)""" return transforms.Compose([ transforms.ToPILImage(), transforms.ToTensor(), transforms.Normalize( mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225] ) ]) def create_data_loaders( invalid_dir: str, valid_dir: str, raw_dir: str = None, img_size: int = 512, batch_size: int = 32, num_workers: int = 8, use_raw: bool = False, use_weighted_sampler: bool = True ) -> Tuple[DataLoader, DataLoader]: """ Create train and validation data loaders Args: invalid_dir: Directory with invalid fundus images valid_dir: Directory with valid fundus images raw_dir: Directory with raw unlabeled images (optional) img_size: Target image size batch_size: Batch size num_workers: Number of data loading workers use_raw: Whether to include raw unlabeled images use_weighted_sampler: Whether to use weighted sampler for class imbalance Returns: (train_loader, val_loader) """ # Create train dataset train_dataset = FundusQualityDataset( invalid_dir=invalid_dir, valid_dir=valid_dir, raw_dir=raw_dir, img_size=img_size, transform=get_train_transforms(img_size), use_raw=use_raw ) # Split into train/val dataset_size = len(train_dataset) val_size = int(0.2 * dataset_size) train_size = dataset_size - val_size from torch.utils.data import random_split train_subset, val_subset = random_split( train_dataset, [train_size, val_size], generator=torch.Generator().manual_seed(42) ) # Create samplers if use_weighted_sampler: # Weighted sampler to handle class imbalance labeled_indices = [i for i in range(len(train_dataset)) if train_dataset.is_labeled[i]] if len(labeled_indices) > 0: labeled_labels = [train_dataset.labels[i] for i in labeled_indices] class_counts = np.bincount(labeled_labels, minlength=2) class_weights = 1.0 / (class_counts + 1e-8) # Create weights for all samples (unlabeled get weight 1) weights = torch.ones(len(train_subset)) for idx_in_subset, idx_in_dataset in enumerate(train_subset.indices): if train_dataset.is_labeled[idx_in_dataset]: label = train_dataset.labels[idx_in_dataset] weights[idx_in_subset] = class_weights[label] sampler = WeightedRandomSampler(weights, len(weights)) else: sampler = None else: sampler = None # Create data loaders train_loader = DataLoader( train_subset, batch_size=batch_size, sampler=sampler, shuffle=(sampler is None), num_workers=num_workers, pin_memory=True, drop_last=True ) val_loader = DataLoader( val_subset, batch_size=batch_size, shuffle=False, num_workers=num_workers, pin_memory=True ) return train_loader, val_loader