#!/usr/bin/env python3 """Standalone figures: t-SNE, 3-D PCA (PC1-PC3), and 2-D PCA (PC1/PC2). One plot per file so each can be dropped into a slide on its own. Every title carries the held-out classification accuracy reachable from exactly the axes drawn, so a reader can tell apart "looks separated" from "is separated". Held-out episodes only; splits are by episode because frames within an episode are near-duplicates. """ import argparse import numpy as np import matplotlib matplotlib.use("Agg") import matplotlib.pyplot as plt from mpl_toolkits.mplot3d import Axes3D # noqa: F401 from sklearn.decomposition import PCA from sklearn.linear_model import LogisticRegression from sklearn.manifold import TSNE from sklearn.pipeline import make_pipeline from sklearn.preprocessing import StandardScaler DIA = {"cable 1.70 sq": 1.7, "blue cable": 2.6, "cable 3.30 sq": 4.5} NAME = {1.7: "1.7 mm", 2.6: "2.6 mm", 4.5: "4.5 mm"} COLOR = {1.7: "#C05621", 2.6: "#2B6CB0", 4.5: "#2F855A"} def acc(A, y, tr, cols=None): Z = A if cols is None else A[:, cols] c = make_pipeline(StandardScaler(), LogisticRegression(max_iter=3000)).fit(Z[tr], y[tr]) return c.score(Z[~tr], y[~tr]) def main(): ap = argparse.ArgumentParser() ap.add_argument("--cache", default="outputs/pca/cache_cable_feats.npz") ap.add_argument("--outdir", default="outputs/pca") ap.add_argument("--perplexity", type=float, default=30.0) args = ap.parse_args() d = np.load(args.cache, allow_pickle=True) X, y, ep = d["feats"], d["y"], d["eps"] rng = np.random.default_rng(0) tr = np.zeros(len(y), bool) for t in np.unique(y): e = np.unique(ep[y == t]) tr |= np.isin(ep, rng.choice(e, size=int(len(e) * 0.7), replace=False)) te = ~tr order = sorted(set(y), key=lambda s: DIA[s]) Xc = X - X.mean(0) p = PCA(n_components=30).fit(Xc) Z, evr = p.transform(Xc), p.explained_variance_ratio_ plt.rcParams.update({"font.family": ["DejaVu Sans"], "font.size": 12}) # --- 1) t-SNE only emb = TSNE(n_components=2, perplexity=args.perplexity, init="pca", random_state=0).fit_transform(Z) fig, ax = plt.subplots(figsize=(7.2, 6.4)) for t in order: m = te & (y == t) ax.scatter(emb[m, 0], emb[m, 1], s=18, alpha=0.65, edgecolors="none", c=COLOR[DIA[t]], label=NAME[DIA[t]]) ax.set_xlabel("t-SNE 1"); ax.set_ylabel("t-SNE 2") ax.set_title(f"t-SNE (perplexity {args.perplexity:g})", fontsize=13) ax.legend(frameon=False, title="cable diameter") ax.spines[["top", "right"]].set_visible(False) fig.tight_layout(); fig.savefig(f"{args.outdir}/cable_tsne.png", dpi=160, bbox_inches="tight") print(f"wrote {args.outdir}/cable_tsne.png") # --- 2) 3-D PCA, default first three components a3 = acc(Z, y, tr, [0, 1, 2]) fig = plt.figure(figsize=(7.6, 6.6)) ax = fig.add_subplot(111, projection="3d") for t in order: m = te & (y == t) ax.scatter(Z[m, 0], Z[m, 1], Z[m, 2], s=11, alpha=0.55, edgecolors="none", c=COLOR[DIA[t]], label=NAME[DIA[t]]) ax.set_xlabel("PC1"); ax.set_ylabel("PC2"); ax.set_zlabel("PC3") ax.set_title(f"3-D PCA (PC1-PC3)\n{a3:.1%} accuracy (chance 33.3%)", fontsize=13) ax.legend(frameon=False, title="cable diameter", loc="upper left") ax.view_init(elev=18, azim=-60) fig.tight_layout(); fig.savefig(f"{args.outdir}/cable_pca3d_pc123.png", dpi=160, bbox_inches="tight") print(f"wrote {args.outdir}/cable_pca3d_pc123.png ({a3:.1%})") # --- 3) 2-D PCA, default components a2 = acc(Z, y, tr, [0, 1]) fig, ax = plt.subplots(figsize=(7.2, 6.4)) for t in order: m = te & (y == t) ax.scatter(Z[m, 0], Z[m, 1], s=18, alpha=0.65, edgecolors="none", c=COLOR[DIA[t]], label=NAME[DIA[t]]) ax.set_xlabel(f"PC1 ({evr[0]:.1%} of variance)") ax.set_ylabel(f"PC2 ({evr[1]:.1%} of variance)") ax.set_title(f"PCA (PC1 vs PC2)\n{a2:.1%} accuracy (chance 33.3%)", fontsize=13) ax.legend(frameon=False, title="cable diameter") ax.spines[["top", "right"]].set_visible(False) fig.tight_layout(); fig.savefig(f"{args.outdir}/cable_pca2d_pc12.png", dpi=160, bbox_inches="tight") print(f"wrote {args.outdir}/cable_pca2d_pc12.png ({a2:.1%})") if __name__ == "__main__": main()