diff --git a/.gitattributes b/.gitattributes
index e39043aa1ddc3fc936c18a161680dd9cc38e9fb7..5ff7da37787d3c040398fb76457ee9304f27b7d6 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -12004,3 +12004,251 @@ xenium_skin_mixed/sample16/Ndufa9_betadata.feather filter=lfs diff=lfs merge=lfs
 xenium_skin_mixed/sample16/Dgkq_betadata.feather filter=lfs diff=lfs merge=lfs -text
 xenium_skin_mixed/sample16/Trappc10_betadata.feather filter=lfs diff=lfs merge=lfs -text
 xenium_skin_mixed/sample16/Snx5_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Camsap1_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Fadd_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Pla2r1_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Cd28_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Zyx_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Espl1_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Ezh2_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Syncrip_betadata.feather filter=lfs diff=lfs merge=lfs -text
+xenium_skin_mixed/sample16/Snap29_betadata.feather filter=lfs diff=lfs merge=lfs -text
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diff --git a/xenium_skin_mixed/sample16/spacetravlr_run_repro.toml b/xenium_skin_mixed/sample16/spacetravlr_run_repro.toml
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+[data]
+adata_path = "/ix/djishnu/shared/djishnu_kor11/training_data_revision/xenium_skin_mixed.h5ad"
+layer = "imputed_count"
+cluster_annot = "cell_type_int"
+condition = "sample_id"
+
+[spatial]
+radius = 200.0
+spatial_dim = 32
+contact_distance = 50.0
+weighted_ligand_scale_factor = 1.0
+
+[grn]
+tf_priors_feather = "/ix1/ylee/kor11/djishnu_kor11/training_data_2025/xenium_skin_links.feather"
+tf_ligand_cutoff = 0.15
+use_tf_modulators = true
+use_lr_modulators = true
+use_tfl_modulators = true
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+[cnn]
+adam_beta_1 = 0.9
+adam_beta_2 = 0.999
+adam_epsilon = 0.00001
+spatial_feature_radius = 200.0
+output_activation = "sigmoidx2"
+
+[lasso]
+l1_reg = 0.000000001
+group_reg = 0.000000001
+n_iter = 100
+tol = 0.0001
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+[training]
+seed_only = false
+mode = "full"
+epochs = 10
+learning_rate = 0.0002
+score_threshold = 0.1
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+[training.hybrid]
+min_cells_per_cluster_for_cnn = 80
+max_modulators_soft_for_cnn = 600
+moran_k_neighbors = 8
+moran_permutations = 99
+moran_p_value_max = 0.05
+moran_p_value_max_when_over_modulator_cap = 0.01
+require_all_clusters_lasso_converged = true
+hybrid_modulator_spatial_weight = 1.0
+hybrid_cnn_permissiveness = 1.0
+
+[execution]
+n_parallel = 40
+output_dir = "/ix/djishnu/shared/djishnu_kor11/rust_trainings/xenium_skin_mixed"
+write_minimal_repro_h5ad = false
+stale_lock_secs = 0
+
+[perturbation]
+beta_scale_factor = 1.0
+n_propagation = 4
+ligand_grid_factor = 0.5
+
+[model_export]
+save_cnn_weights = false
+compressed_npz = true
+output_subdir = "CNN_weights"