#!/usr/bin/env python3 """Validate the standardized OneScience/CMEMS dataset package.""" from __future__ import annotations import argparse import hashlib from pathlib import Path import h5py import numpy as np import yaml YEARS = [1993, 1994, 1995, 1996, 1997, 1998, 1999] EXPECTED_FIELD_SHAPE = (3, 96, 2041, 4320) EXPECTED_STATS_SHAPE = (1, 96, 1, 1) def sha256(path: Path) -> str: digest = hashlib.sha256() with path.open("rb") as handle: for chunk in iter(lambda: handle.read(1024 * 1024 * 16), b""): digest.update(chunk) return digest.hexdigest() def load_schema(path: Path) -> dict: with path.open("r", encoding="utf-8") as handle: return yaml.safe_load(handle) def load_checksums(path: Path) -> dict[str, str]: checksums = {} with path.open("r", encoding="utf-8") as handle: for line in handle: if not line.strip(): continue digest, relpath = line.strip().split(maxsplit=1) checksums[relpath] = digest return checksums def normalize_attr_strings(values) -> list[str]: return [value.decode() if isinstance(value, bytes) else str(value) for value in values] def main() -> None: parser = argparse.ArgumentParser(description="Check CMEMS HDF5 files, schema, attrs and optional checksums.") parser.add_argument("--dataset-root", default=".") parser.add_argument("--verify-checksums", action="store_true") args = parser.parse_args() root = Path(args.dataset_root).resolve() schema = load_schema(root / "metadata" / "schema.yaml") expected_variables = schema["variables"] checksums = load_checksums(root / "metadata" / "file_checksums.sha256") for year in YEARS: relpath = f"data/{year}.h5" path = root / relpath if not path.exists(): raise FileNotFoundError(f"missing file: {path}") if path.stat().st_size != 10157335296: raise AssertionError(f"{path} size mismatch: {path.stat().st_size}") with h5py.File(path, "r") as handle: for key in ("fields", "global_means", "global_stds"): if key not in handle: raise KeyError(f"{path} missing dataset {key}") fields = handle["fields"] if tuple(fields.shape) != EXPECTED_FIELD_SHAPE: raise AssertionError(f"{path} fields shape {fields.shape}") if fields.dtype != np.dtype("float32"): raise AssertionError(f"{path} fields dtype {fields.dtype}") if int(fields.attrs["time_step"]) != 24: raise AssertionError(f"{path} time_step attr mismatch") variables = normalize_attr_strings(fields.attrs["variables"]) if variables != expected_variables: raise AssertionError(f"{path} variables attr does not match schema") for stat_key in ("global_means", "global_stds"): stat = handle[stat_key] if tuple(stat.shape) != EXPECTED_STATS_SHAPE: raise AssertionError(f"{path} {stat_key} shape {stat.shape}") if stat.dtype != np.dtype("float32"): raise AssertionError(f"{path} {stat_key} dtype {stat.dtype}") if args.verify_checksums: actual = sha256(path) if actual != checksums[relpath]: raise AssertionError(f"{path} sha256 mismatch: {actual} != {checksums[relpath]}") print("CMEMS dataset validation passed.") if __name__ == "__main__": main()